LOCUS       DANMBQ010000001        69490 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.001, whole genome shotgun sequence.
ACCESSION   DANMBQ010000001 DANMBQ010000000
VERSION     DANMBQ010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 69490)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 69490)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..69490
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.001"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            7..225
                     /locus_tag="PXE92_000001"
     CDS             7..225
                     /locus_tag="PXE92_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5759298.1"
                     /translation="MARNKRVRDMSNFEIRGELMKIGKSLSQLGIENGLAKTTVRNAL
                     DKPYPKGEQIIAKAIGKTPQEIWPSRYE"
     gene            235..2205
                     /locus_tag="PXE92_000002"
     CDS             235..2205
                     /locus_tag="PXE92_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HDL5759299.1"
                     /translation="MKEWFLAKEIAGLSGVPELPNSVSRLATKEGWQKRQIQGVRGVT
                     YEYHLTSLPIETQQQLRLNAALAVIPQAAELQPKRDDPALIARLNNATDKGRDKAKGK
                     AEACMQLQAFLDQGFSYTQAEAGAATAKNVSQGSLKNWYYKVKGHPVHLWQAILISES
                     GRSKKPQLKAKITEEAWDCFLADYLRPEKPDLRASYRRTQAIAKQYGWQIASLQTFQR
                     RVLAEVPYEVILLKREGANAVAKLVPALQRTVKDILAGEWINGDGYQHNVFVKWHTGE
                     IVRPKTWFWQDVRTRKILGYRTSISENTDSIRHALMDVIFNVGIPKTLTLDNTRAAAN
                     KAMTGGIENRYRFKHTELDPKGIMPILGIDVHFTSILYGEGHGQAKPIERAFGRGGIG
                     EKIDKRPELSGFYTGRNAQETPDNYNGGKDGVDYNTFLKAIAAGIEEYNSQTERHTEM
                     CRGELSFNQVWERDYHPSNVRQASPEQLRLLFLQAETVSIKRNGSFTLKAAGKLYGLT
                     NVYWAESLIGITDKKVVARFDPDDLHGNVYVYNLEGQFLAEAVCREAKGFGDTSASRE
                     QGRLYQKVVKSAKAQAEALELLEAHELASLAPQVDVPEPIEKKVKEVLVKEDFIVDFN
                     TVRKATVVEETEEISIFDEVLLKQEKQLRIVE"
     gene            complement(2385..2873)
                     /locus_tag="PXE92_000003"
     CDS             complement(2385..2873)
                     /locus_tag="PXE92_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759300.1"
                     /translation="MLFRSLTDDEIHQIALDSARATFSGFKLKRANAIVMKNCITLFK
                     LSTINFCLAEYHSSFHHLTSIDDLDGIMPTVKKVAQMLSLQESKALIWLLYLKWLFVM
                     RQRSLQVLLENSADLIQGEVIAQPLPTFVKAVLAFQLETYHGLPEWIPEFDSAEFWQS
                     LS"
     gene            2905..3846
                     /locus_tag="PXE92_000004"
     CDS             2905..3846
                     /locus_tag="PXE92_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5759301.1"
                     /translation="MTLIDQIKQHIAESGSSQGKVAKEAGINAGALSAYLNENYKGNN
                     EELEAKLIAYLERIEAKKREFVEAPSFIETKTANQIFGSLRFAQNTGVLAIIHGASGV
                     GKTQAAREYRKRYANVWLVTASPSRSSLSEVLYEIALELGMNDAPRRKGTLARLIVRK
                     MKGTAGLLIIDEADHLPYEALEELRLLQEEVVNESDIGAGVGLVLIGNDKVYTRMKGG
                     INPAHEYGRLWSRSAKRTSIQKTKKEDTQAVAKAWGLSENQEALKVMQAITETGGGLR
                     ILTHTLRLAAMVAKDRMIPLTADLIQLARKDLLSTGD"
     gene            3849..4163
                     /locus_tag="PXE92_000005"
     CDS             3849..4163
                     /locus_tag="PXE92_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759302.1"
                     /translation="MRTPKPKHSFNRTNQAACRFLKQTQKAIIRLNSLGFTVLNIDFT
                     RIKPRIEVEIGNNKHIAQGLIYEGKAYRYSFGKSEDLGRWEGYYTMLEGIRVWWRQAA
                     IH"
     gene            4175..4411
                     /locus_tag="PXE92_000006"
     CDS             4175..4411
                     /locus_tag="PXE92_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759303.1"
                     /translation="MKTLALLTALLGLVGCDLVQSKQAKNYIGNNLTEICIDNVVYLI
                     YSGDKKGGITPKVNKDFYPYTCTNKEERQNGKTR"
     gene            4395..4688
                     /locus_tag="PXE92_000007"
     CDS             4395..4688
                     /locus_tag="PXE92_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759304.1"
                     /translation="MAKPDETPITKAECQSQLAELGVQYKKLPMAITRHICNATTNIH
                     GKVIKVSVVERVGYGVQITAQGNEKSCLVTYEAMLGMAEAMGLFDEVKEQNND"
     gene            4810..5028
                     /locus_tag="PXE92_000008"
     CDS             4810..5028
                     /locus_tag="PXE92_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL5759305.1"
                     /translation="MNDELAAISASYAQHNRYQHYAEKAAEAERKGNYKEAQDHWEVA
                     KLSAKKTANRDWAEQRAEFCKRMHNKPF"
     gene            5038..5220
                     /locus_tag="PXE92_000009"
     CDS             5038..5220
                     /locus_tag="PXE92_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759306.1"
                     /translation="MTETVKAQLNSQLNEAIIQLIQAQKYLNQDDAIRSGVYIGTVQD
                     LLPKVHLKLLTANRKH"
     gene            5237..5626
                     /locus_tag="PXE92_000010"
     CDS             5237..5626
                     /locus_tag="PXE92_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759307.1"
                     /translation="MAITEEQWKEIKQKLDSIIGRVKFRYKEHLLTVDVVQIKRSLKL
                     AVYVDGEIDGAWTKEGHEIRPYLEEVWYRKERPFFNAKEKKEYRGLMSKKKLNEKIVT
                     YSPMFPSPTALTRQYKKLDGLELIEVI"
     gene            5675..5962
                     /locus_tag="PXE92_000011"
     CDS             5675..5962
                     /locus_tag="PXE92_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759308.1"
                     /translation="MNKNEFFKKYHLEGSLAILDLDANDDQSQFCYQALLEYRELPLD
                     TFLAEYSDDEDMTESEFIELMLDELEWIIRRAKNAKRFVKKRQKTMREEIM"
     gene            6081..6626
                     /locus_tag="PXE92_000012"
     CDS             6081..6626
                     /locus_tag="PXE92_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1018 domain-containing protein"
                     /protein_id="HDL5759309.1"
                     /translation="MTDKAKLIQLIHIAKSQLAMDDLSYREMLKRLTNKTSSTKCTVV
                     ELHKVLHELQTKGAKVKYFAKRSKKPTAYSPATGETAVKSQIAHKIRAVWITMGKHGF
                     LNDPSEKALNAYMRKVINNKTRPTILLNVSALEAGDASYMLEILKKWHKRVMIKALSK
                     SCTVDPKISYDELVEWYNEVM"
     gene            6613..7146
                     /locus_tag="PXE92_000013"
     CDS             6613..7146
                     /locus_tag="PXE92_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759310.1"
                     /translation="MKLCRCPICHSDIHLEALVEDEAGRELLGKISQLTHGVAQPMVA
                     YLGLFKPQKSNLNNSRALKILNDVLALYPCSLLLAQALSETVVSIRKKRQQAMENGQK
                     IEPLPNHNYLKSVYETQKVHFAVVRTGKTERETMKAELEKTRNAIAYVQRFVDLGREE
                     VVKNSPEYQIWLAHKPK"
     gene            7311..7670
                     /locus_tag="PXE92_000014"
     CDS             7311..7670
                     /locus_tag="PXE92_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5759311.1"
                     /translation="MELVDIFEEKAPEVLTDLAKHIEVALEEKCQFSPEKAKQIGIDI
                     AQQMAQNWGGEVIYIPRNLLMALNERDMKIYEEFNGNNHRELARKYNVSMQWVYKIVK
                     KVHKDEVARRQMSMFEM"
     gene            7806..8315
                     /locus_tag="PXE92_000015"
     CDS             7806..8315
                     /locus_tag="PXE92_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL5759312.1"
                     /translation="MSQNLTFRQIFDRLIGHEGGYVNHPQDPGGETHWGITKRTAVAN
                     GYMYAMKNMTREQAYQIYEKAFWQRYRCAELKPAVAYQFFDAVVNHGFGNASRMLQRA
                     VGVADDGIIGNITLQAINAKSESDLLMLFNAERLKFYTKLRNFPTFGKGWVNRVAGNL
                     EYAAQDNEV"
     gene            8318..8587
                     /locus_tag="PXE92_000016"
     CDS             8318..8587
                     /locus_tag="PXE92_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL5759313.1"
                     /translation="MAKLFKELLSTNGTLSTTSTVQFFGTLCVFGLMVYAVITQQPYA
                     ESLLNNVLIYLFGATTAKGVVTSYQAKIKGGIHKQQSTFKEEEGC"
     gene            8581..8928
                     /locus_tag="PXE92_000017"
     CDS             8581..8928
                     /locus_tag="PXE92_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL5759314.1"
                     /translation="MLMQQILGVIGVIAAILSYALFKSWQLKRERKKNAILQAEKQQQ
                     AVEIEQKKAEVKYVYISKKNNEKVTRSSASDIDDKLQQHGYFRDNNRLHGVQSDLSEP
                     CGYAGNETSDSCS"
     gene            8955..9107
                     /locus_tag="PXE92_000018"
     CDS             8955..9107
                     /locus_tag="PXE92_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759315.1"
                     /translation="MKYIKKLRKRWQIWRFLKNHPEVAQRRDLLAIAIKQGVENPVGR
                     ARRREP"
     gene            9107..9442
                     /locus_tag="PXE92_000019"
     CDS             9107..9442
                     /locus_tag="PXE92_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2730 domain-containing protein"
                     /protein_id="HDL5759316.1"
                     /translation="MDLFTVFWESIRANFGFISALLTIVVTAFWLKLDSKYAKKNDLG
                     ELLEIAKSHDNRLTTLETKVENLPSAVDVEKLKTLVTDVKGDTKATSKQVDSISHQLG
                     LLLEAKLKE"
     gene            9444..9740
                     /locus_tag="PXE92_000020"
     CDS             9444..9740
                     /locus_tag="PXE92_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759317.1"
                     /translation="MSLRDLLTQDQRLVILRSLAEAGYDANESIISDCLDLYGHDISR
                     DLVRTHLSWLEEQGLLTLERLRDGYMVASITQRGLDVAQGRVVVSGVKRPRPKI"
     gene            9763..10335
                     /locus_tag="PXE92_000021"
     CDS             9763..10335
                     /locus_tag="PXE92_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3486 family protein"
                     /protein_id="HDL5759318.1"
                     /translation="MSEKNTRGRASKVDLLPPNIKTQLAMMLRDKQYSQSQILEEIND
                     LIRDCGLPDEMLLSKTGLNRYASRMERLGAKIRNAREVAEIWTKQFGEMPQTDIGKTL
                     MEMVKQIAFETSLKLGEQEGGIEPKQLALLSSAIQRLEQAESLSFKREQAIRKEVAQQ
                     AAETAEKVVVQAGLSAETVRTIKEQILGIA"
     gene            10335..11891
                     /locus_tag="PXE92_000022"
     CDS             10335..11891
                     /locus_tag="PXE92_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HDL5759319.1"
                     /translation="MALLNNRPLNELAPECRSFLESIHAFNPNELLLGYQKRWIADDS
                     QLKIAEKTRRCGLTWAEAADNALIASTRKSDGGSDVFYIGSNKEMAREYIDAVAMWAK
                     AFNRVAGEIQEEIFEDEDKDILTYVIYFSSGFKVKALSSNPKNLRGMQGVVVIDEAAF
                     HEYLAEVLKAALALTMWGAKVRIISTHNGSENLFNELITDSRAGRKRYSVHTITIEDA
                     CRDGLYQRICQVVTKKTWSPEAEKEWIENLLNDTASEEDALEEYFCVPKFGSGLWLSR
                     ALIERQMSEATPVIRFTAKDGFSLVAEPTRYAEIAEWCELELEPILATLNPDLLHFMG
                     EDFARSGDMTSLVVLAQQQNLVRKVAFIVELGNMPYKQQEQIVMFMLKRLPHFAGGAF
                     DARGNGGYLAEAARDEFSTLIDCVQLSEKWYREHTAPFKAALEDGELEAIPKDADILA
                     DLRSFQVVKGVPRIPDKRTKSADGKSKRHGDTAISLLLAHYASRQLVQMPVEPVSRRP
                     RHSQQLTEGY"
     gene            12010..13464
                     /locus_tag="PXE92_000023"
     CDS             12010..13464
                     /locus_tag="PXE92_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HDL5759320.1"
                     /translation="MAKKNNLISEIATRARSIDYWAFGYYLPNPDPILKRMGKDISVY
                     RELLSDGQVRSGVRRRKAAIKGLEWRITTTNNEKVDEQIYQIFNRLPMNNLITEMLNA
                     ALYGYHISEVIWAKEGELFVPTEIIGKKPEWFMFDDENLLRFRTKENWADGELLPDDK
                     FLLTTQEATQDNPYGLGDLSLCFWAATFKKGGFKYWLEFTEKYGSPWLIGKHPRQAHN
                     TDKERLADALEGMISSAIAVIPEDSSVEIKDAAGKSASTDAFEKFLNFCKAEINIALL
                     GQNQTTEQESNRASAQVGLEVMEDIRSDDQAMIEATFNTLLQWIVKYNFNVEQLPKFE
                     FYEQEAINTDQVERDSKLHAMGVRFSKAYFEREYGFEAGDIEVQAVEKAEKSANTTEF
                     SEGQRRTQVPMPVPILEQLEHEGEAMVDDWLQGVRDKLAQADSLEDFQSQLDSLIPEL
                     SFAEYGELLALGSTVAELAGRQSVNDEIKAKRNA"
     gene            13457..14734
                     /locus_tag="PXE92_000024"
     CDS             13457..14734
                     /locus_tag="PXE92_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL5759321.1"
                     /translation="MRKFTFKQQAQYFEKKLNLRTNSYLDILGEEHDYFFVVAGANRN
                     EVLSEFRKAVDEAIHNGETLENFRKRFDEVVAKTGWEYNGGRNWRTRIIYDTNVYGAY
                     NRGRLQQHLELAEDMPYWEYQHNDNAHPRPQHVAWDGLVLRYDDPFWKYHYPIKAYGC
                     HCTVQALDDFDLKHDGKTVSPPPEIEFEQKTVGVRTGNSRVVTVPKGVDVGFTPHNFD
                     NLKAGRAANVDKLLMQKMVTADPIFASKAVSDLLAKEPVAKLHNQAFKNWVNDVANAK
                     GSALSQVENMQLLGVLPVAVIERLQQINLAPQSAIIAITKGDMVHALRELKQNTGIAV
                     PLEFWEKLPAKLQYPNAILLEKQQAETTLLFIYDVAQTKIAVKVNYDATLQDRHGAKG
                     RQKVLLNRAVTGSLFQDTTGLKSSKYEVLLGEM"
     gene            complement(14936..15280)
                     /locus_tag="PXE92_000025"
     CDS             complement(14936..15280)
                     /locus_tag="PXE92_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759322.1"
                     /translation="MMVNAEQAIELVYDLLLSRQWLVTKAEKLPLDPLSEKEAVMFLY
                     TLDQQTEASWLQLTPEQRATANGLIMDFIAKCLTSTKQWLVSDNIVPELQAIEIIKHE
                     IFLSHNSLVMPN"
     gene            15344..15808
                     /locus_tag="PXE92_000026"
     CDS             15344..15808
                     /locus_tag="PXE92_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL5759323.1"
                     /translation="MIKITLNNTQAVKSLQQIANQLEQPRRLYGILGETLKKIHTARF
                     KAEQDPDGNNWKPLASSTLALKRKRGKSTKILRQDGYLADKTAYNVTSDNVEFGSQEV
                     YARLHQFGGKAGRGKKVTVPARPWLGVGDKDEQLLLRKAEWHLGQIIGRMGK"
     gene            16043..17158
                     /locus_tag="PXE92_000027"
     CDS             16043..17158
                     /locus_tag="PXE92_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HDL5759324.1"
                     /translation="MTQIEIFKAGKRYDANGTLIDITPEMLQQTVAAYNPEFHEAPLV
                     IGHPKSNNPAWGWVKALSLEGDVLKAEVDQLDAEFSEMVASGKFKKVSAAFYLPDSPN
                     NPHKGVLSLRHVGFLGAMPPAVKGLKQVEFAEDDDFVVFSEWGVASLFSRFRDWLVSE
                     FGLEKADKALPPHEIDWLKEEAMRSQISKQVHAEQATPEPIFNEPAQPEGEPEMSAEE
                     KEELERLKAENEQLKAEKAQAEAEKMEAELEAEKAGNAEFCEGLVKQGKLAPVAKAAF
                     VQALNNLSVLKAGREPEFNEGEDVVSQFKSAMSQSPQIIQFGEYATADKANPQEAEAV
                     EYAEGTDPVSIEADQKVRAYMKAHNVGYAAAFNAIYR"
     gene            17189..18115
                     /locus_tag="PXE92_000028"
     CDS             17189..18115
                     /locus_tag="PXE92_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HDL5759325.1"
                     /translation="MTTHNLQKLRVQDPVLTELAQGYHNNELVAETLMPTVEIEKEAG
                     KIPTFGRLAFRLPSTVRNLRGSSNRLDPEDIGAIDVALEEHDVEYAIDYREENEAIFS
                     LRQFALNTTQDVIALGREKAVATLALDESRYETDNKVTLSGTSQFSHKDADVFKVFDT
                     AIRAVKRAIGRKPNVCVISGDVWAALKEHPAVVEKLKYSQVAIVTPEVFAKLIGIETV
                     KIGEAVYEESGQLKDIWSKDIVVAYVAPRSTGGKGTVYEPSYGYTVRRQKGLFVDTYK
                     ESGGKIEVVRTTDIHKPHLVGAAAGYLIKAAV"
     gene            18184..18465
                     /locus_tag="PXE92_000029"
     CDS             18184..18465
                     /locus_tag="PXE92_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759326.1"
                     /translation="MAKFIVLHTPILHDGKRYEVGAEIELTAEQAENNAINLKAVEAV
                     PKPPKNASKPEDEPKPEGEPKPEDAVTEDDVKLAEAKIAEAEQPKGNKK"
     gene            18465..18899
                     /locus_tag="PXE92_000030"
     CDS             18465..18899
                     /locus_tag="PXE92_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL5759327.1"
                     /translation="MYVQIDELLTAFSRKIVVQLSNDEPTATEPDLKMLETAVKVANE
                     RIDAALRSRYTLPLADVPTLINQHALTLARYWLYARRPETKMPDTVKETYQQAVKELE
                     QIATGKLHLGIAESSQILEDDVLADNSEYEVRANARIDTSRY"
     gene            18905..19402
                     /locus_tag="PXE92_000031"
     CDS             18905..19402
                     /locus_tag="PXE92_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gp37 family protein"
                     /protein_id="HDL5759328.1"
                     /translation="MSATQPILEDICQHLRQALPEWEVELFPNDPSTYHLSHINGAVL
                     ISYLASKFEKPRTTQAVLQVRHVQIALTVLTRDLHNDVGALDLLDKLRLLVVGFKPQN
                     CGECWLIDEFFNGSSEETGLWQYQLILQTETQQVQHQAVENLPKFVTAHLRRQDQPGS
                     PGLKT"
     gene            19487..20872
                     /locus_tag="PXE92_000032"
     CDS             19487..20872
                     /locus_tag="PXE92_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath subtilisin-like
                     domain-containing protein"
                     /protein_id="HDL5759329.1"
                     /translation="MTFHHGSETERVNGGSVPVSVVDSAIIGIVGTAPIGAVNELTVC
                     LTKKDFAKFGTILNQGFTLPDAFDILARYAAGKVYVVNVLDPSRHRTTVTDEVLTLDR
                     NTLTAQTAKTGIIAVTRVKDGANVLNADRYSVDLQTGVVTFVSAPSAPKISYIYADPS
                     KVTEEDIKGGVDSLTGKRKGFELLRDGFNLYGADAKILICPEFDKTASCAAALATLAD
                     QLHAKAYIQLPKGTSLSKAIQGRGPAGTINASASNENVRHFFPYALGSSNTLESLATH
                     AAGLRMLIDVEKGYWFSTSNKELKGVIGLEIPLTARVDDKQSETNLLNAVGITTIFNS
                     FGTGFRLWGNRSSNFPTVTHISNFEVASRTGDIIDESIRQAELQFIDLPIDDALLDSF
                     LETIDTFLRTQKSLVGYSVSLDYEYDLVDAFSRGQVPIVYEYTPKIPGERISNKSVMT
                     RKYLANLVSQR"
     gene            20883..21398
                     /locus_tag="PXE92_000033"
     CDS             20883..21398
                     /locus_tag="PXE92_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL5759330.1"
                     /translation="MSIAINQIVNGNVYINGNSQMGRVNEVKIPDIEFEFIEHKGLGM
                     HGVIKLPAGTNAIEAEITWDSFYPEVRAVMLNPYKYTQLQIRSNLQVFNSQGLAAEEP
                     MVTIMNVSAGKIGGTGHKNKENAEFADTLNVHSIKQTVAGRELLFIDVLANIYRVNGV
                     DVLQKFRTNIG"
     gene            21494..21808
                     /locus_tag="PXE92_000034"
     CDS             21494..21808
                     /locus_tag="PXE92_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL5759331.1"
                     /translation="MANAAQQVLTNLRVQTTYKLQYPIALPDGRVIETLDVRRPKGKD
                     FRLLDEKGFDPEKDGVKILRFYIQQLTTLVPEDIDELDAADIKGLNNLLEDMLIEGKS
                     DK"
     gene            21805..21957
                     /locus_tag="PXE92_000035"
     CDS             21805..21957
                     /locus_tag="PXE92_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005658873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL5759332.1"
                     /translation="MSELDTVYADLAWWFKFSPSELLELDLVDIPKWVEQMNRQIKAG
                     YGQILR"
     gene            complement(21936..22238)
                     /locus_tag="PXE92_000036"
     CDS             complement(21936..22238)
                     /locus_tag="PXE92_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759333.1"
                     /translation="MLTKLNNRITEWAGFEACVTRTECTAKWLLAVALVGWSIFYWLD
                     AIQSIQSLSEGVSFVLIYGLILTILAWVGVYLAWGVAILLTLATEPFIWLYRKICP"
     gene            22286..24943
                     /locus_tag="PXE92_000037"
     CDS             22286..24943
                     /locus_tag="PXE92_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5759334.1"
                     /translation="MANNLAIGMVIGASLSSGFHGAFSGAKKKLEQLEQAVAKNQQSH
                     SKLGSELTALRSKQATLYAEMSRASSKGGAGLALMQQEYKKIGKEIANISREQRKWST
                     ELEKSIAKQTKLRNAMERHTQAKENRDELKGKIIGTVASAAMGVGVMKTYMEQEEAAN
                     NLKISMLKADGSFGKFEEIGKIADTLGTDLPGTKKDFYKLAMALKKQGVSDDVLTGGA
                     LKTSAELNVLLDMDQESGGEFLAKFMESHRLNENELPQAADYLQRAMFAGGLSKEQMY
                     ESMKYYAPKLNSMKLTGAENTEKVLAIEAMAGQQGLEGSTFGTGLNMMLSRMNKGPEM
                     LKAAAKGMKAEAREMMEAVGVEFNFWDKNGSFKGIDGMLAEMTKFEKIRKKFGDKGVG
                     LVAEELFGIEGGRLADILAMKGQKGLDEMLSKMREQASLQDRINLKTNTLGAALESLG
                     GAWETFVGDIGSVFAEDIKGFSKGLQSAVEWLVPFVSKHKEAIKFVGGLVAGLVILRG
                     VLQAGSFVIQTVTMAMNALKIAAMTNPIVLVIGAIAAGAYLIYSHWDSIAPWFANLWQ
                     NVTAYFNQFWTWVKGVWSGVTDWVSSVWNGVATFFGQLWTTITSLFSVAWTNIQTIWG
                     GATAWFSGLWDGIKSAAFGMFDSISQKVSSVVASIKSFLGFGDDVDKMGAKIGNVATQ
                     VISKEHSGQLSKTADMAANTGFSSGGFTGQGGKYTPAGIVHKGEYVMTKEATSRLGVG
                     MLDSLNYGGAMGFTQPVLQPILGKQKGFFGSLWDDVKFGANFVGNLLGLNQGSLKTPD
                     FNPNATNASGQNSSIFSNYEPLNRNAVTQQESSQAPQIVVNFNPTINVNGNATQEAQS
                     QIMQQLQMSAYEFEKLLNRVLDQRSRRAY"
     gene            24953..25876
                     /locus_tag="PXE92_000038"
     CDS             24953..25876
                     /locus_tag="PXE92_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5759335.1"
                     /translation="MYFMLGNIAFEPVNLTEFSEQHTAEFAEHAVLKGKPRLQAMGEK
                     LNELNFSLRLHHTIGGVESRYQALLEAKAKQAALALIWGSRYKGDYVIVDISSTTLFT
                     DGRGNALAREMQISLKEFVGDNDGGVLGEALNFGGGSLLGSILPSGAVTTLSQIKTAV
                     SRGVELYNSGKRLVDEVQNTVAIIRQLKNDPATALAYLPAALANLDGALGHFGNLTGS
                     SATLGGLQEKLPAAVVFSEEIGEIYQSLQTMRSSLGNASANSWDNWFTPAESALTEVT
                     DSFDHLAKPVAKMTAWIVLRTDEEAENDTVA"
     gene            25860..26087
                     /locus_tag="PXE92_000039"
     CDS             25860..26087
                     /locus_tag="PXE92_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL5759336.1"
                     /translation="MTQLLKHIVKQGERWDNLSYQYYGNAFEYGRIIDANPHIGFCEV
                     LPIGVTIYIPVLNVKPTNNENMPPWLRGRDA"
     gene            26080..27144
                     /locus_tag="PXE92_000040"
     CDS             26080..27144
                     /locus_tag="PXE92_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759337.1"
                     /translation="MRNVPKPDFSLFYEKTNITAEIEPHLVQLTYIDHLEGQSDELTV
                     EFEDIQGKWIRQWFPTQGDKLKAAIGYQGEFLTDIGEFEIDEVEYSYKPSTINLKALS
                     TGISKANRTLKPKAYENTTLAQVVAKVADNLKLKVVGKIKAIPIKRITQYQERDVEFL
                     ARLAREYHHSFKIVGNQLVFTDKSELGQSEPVLMLEERDTISLRLRDRIKDTAKAVEI
                     SGYDTSGKKVVKKRKKAKALRPNIKQAKSASEDTLKIITRGESQEQIDARGEAALATQ
                     NEDQAAGDIELIGNPKLVAGATILLRNFGVFSGKYLIKSSRHTISRSGGYTTHIEVRM
                     LEFIADDLITLGMEAGNANA"
     gene            27131..27667
                     /locus_tag="PXE92_000041"
     CDS             27131..27667
                     /locus_tag="PXE92_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5759338.1"
                     /translation="MQTHNFGATYQEGIVSAVDPKTHKVRCKIPALEDLETAWLSFLT
                     PNAGGNQFYCLPDVGELVAMLLDAQGEGGCVFGAIYNEQDPTPVADSDMWVKKFSNGT
                     EISHNRKTGDVVVKTNGHLTATAQGGATINANTVVNGTLHATGKITSDEEVSAPVVKQ
                     GTVELGTHKHGGSPEPNK"
     gene            27722..28084
                     /locus_tag="PXE92_000042"
     CDS             27722..28084
                     /locus_tag="PXE92_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL5759339.1"
                     /translation="MNRQTSIQLTHWQLAPSTDTVEVVQGIDDIHLCIVNILSTQKGT
                     DILRPEFGSDHFRYIDYPEDVAIPNFVREITTALQKWEKRIEVEEVLVDGSAPHFIFT
                     VMWHLTDDVYREIYRTTV"
     gene            28094..29197
                     /locus_tag="PXE92_000043"
     CDS             28094..29197
                     /locus_tag="PXE92_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL5759340.1"
                     /translation="MTEAIKIIDDDVKTVLAEAIADYEKRTGKILQPAHIERSIIQTY
                     AYREQLLRKGINHAFLQTFPQFATGIALDLCGETFGCYRLRDKPARTLLRFSVSGEHT
                     AIVIPKGTQVAINDELYFSTLNDDVITPLITYVEIDAECNQVGVIGNGWESGRVSKLK
                     TALATNYKVTVENIDITSGGLMQEEDEPYRKRILAAPEAFSNCGSIAAYDYHVRSVSQ
                     DIADVNISTPRGGLVRIAVLTQKGLPDTRLLDDIKKHVSAERLRPLCDMVEVIKPTER
                     RYQITARLILLDGYREDLVKAKAREALQLYLSDKTKKLGLDIVPSAIISALRVEGVYD
                     VNLIQPVKTIINETEWANCTAISVEVEEERRDG"
     gene            29190..29756
                     /locus_tag="PXE92_000044"
     CDS             29190..29756
                     /locus_tag="PXE92_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5759341.1"
                     /translation="MASLHYADIIVRDPKYKALADLSKRLNLLDTSQIMTTLVDLLGD
                     ECIPLLAEKWSVTGYDGLLVADSENSKRALIKRAIELHQLKGTPWSIREVLRRLGFGE
                     VEIDEGLKNRLYESTYVSGIPENERWAHYAIRLSNPITNEQARNIRKVLRNFAPARCS
                     LAVLDYKADPIRYNNKATYNGTYNHGSS"
     gene            29766..32045
                     /locus_tag="PXE92_000045"
     CDS             29766..32045
                     /locus_tag="PXE92_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HDL5759342.1"
                     /translation="MAGVQETAQWENHVYRIEENDPVHGGENGVTNKPIKHLANRTLY
                     LRRLLTEAGQRINPKKITATSKNSNDLTGHTHEIDHASLTQKGIVQLNASIQSTSTTE
                     SATPSAVKAAYDKAATAEQKATLANEKVEAIKVGGRNLLIQSNTPHNGNAYSVRYALA
                     EAPKVGEEIVVTLWGELGSQRTGIGVYNSQGATELAKLVKIRDGVYQGKGIWRKPMSE
                     GRERTPNDTHLNVYFYPKTATDNNRIERIQLERGSIGTDWTPNEADLKAEISAIRTKL
                     IPVRGGNVATTLNAAKRSDWFREMQIPYQSGWGYYTQAFHNSGTQHNYSNLPLTGRYY
                     FIAELYHNSGYSHLRITYPSLKRTFESAINLNNEDLILDWREVVFLKDGLYQGTFKTT
                     GTLESAYRLRAARDDERYQPYLQMVDMGYDLANPPVGKNKIIGSVDYYVKNGTSESSK
                     ATMMAAAMPDKNVFWEVALWNAAQQRNVLFKGYSKTNNLSIGKTTDNERDRVQVNGTI
                     QATAPADNANNDQVPTTAWVRKMAKILADGKVSKAGDTMTGHLFIKNGEYSAVHTYNT
                     SGWFAKWEAAPLSDSHFAAIVYANDRETVINRVLIPKKNGTVALINDIADTVRAAVSR
                     SDKSRSRTFPLQTGKKYTTTGSVTIYPDGRIVQIFHLKNIKAAWFDYEASAVGDRHRV
                     VNIPLWTAMPNKIFDVDVKTVRPSNNASTYYIEAAEWLSAWQIYGNDTNKSSVNINLS
                     RFRGGKDEDMDLYVTVEGY"
     gene            32046..32648
                     /locus_tag="PXE92_000046"
     CDS             32046..32648
                     /locus_tag="PXE92_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759343.1"
                     /translation="MAYFVNVIDEQGNYELIDDEFIGLYPDLDFNTLPKLTDKQYQTY
                     LAKANGKERFVNGEFVYEQIKVDMQAVISAEKSAKLAEINQKAQAFINDLAKYNETPK
                     FERDTWLEQAKEAKAWVADPTVQTPTLELIAQMRGIPLDTLRQKAYEKAMAYQTVAAI
                     VAGQRQGYEDRLEQAETLEQIQAIEPMYQLPQGANNEQTD"
     gene            32632..32907
                     /locus_tag="PXE92_000047"
     CDS             32632..32907
                     /locus_tag="PXE92_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759344.1"
                     /translation="MSKLTKLKSWSYHVLIAIDQLFNALTGGAADETFSSRCYRGAVL
                     AENPKKRWRFWHSFLNCLFLDPKHCYAAYKAEVHRKQYPKAFRLGGI"
     gene            32907..33194
                     /locus_tag="PXE92_000048"
     CDS             32907..33194
                     /locus_tag="PXE92_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759345.1"
                     /translation="MKKQNLKLVRGDDVSFRFSIKDSTGQPLALKDLWFDLHLVSYQG
                     EVLIALSTDDGSIETAEAGQMVLHFSHQQTARAEWTSANYDLQLTHDYTRV"
     gene            33204..33368
                     /locus_tag="PXE92_000049"
     CDS             33204..33368
                     /locus_tag="PXE92_000049"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759346.1"
                     /translation="MTSIIELDLTDDLIIEVQLDSTIITGDSFLANLPDLLQIYNQAK
                     SDSSKELNND"
     gene            33361..34065
                     /locus_tag="PXE92_000050"
     CDS             33361..34065
                     /locus_tag="PXE92_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759347.1"
                     /translation="MTKHKNHENHPIAITFYQLGKDVGDINRRLAVIEQREQSAQPSQ
                     PQAEAVTMPQQDAVAINNINAVLEAVEKYKTFEKYNTQWQERFEKFLSRNPNDYELSE
                     EQRQKLYHTMCQHLWQVNFTEINSKQYELPIPQQFQGKFGYIVKTSGGSTEISFELLS
                     ETHSTYLYPDSYIPEGGGDVMLKPAYIYLVIPDLVAMREPEVVGVSPLKLNILQKHLL
                     TPQKLQEQKPLNTKAN"
     gene            34234..34389
                     /locus_tag="PXE92_000051"
     CDS             34234..34389
                     /locus_tag="PXE92_000051"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759348.1"
                     /translation="MNKSLVALAVAAMASKAQTKQQASKQASKQASKQASKQASKQAS
                     KQASIVR"
     gene            34386..35225
                     /locus_tag="PXE92_000052"
     CDS             34386..35225
                     /locus_tag="PXE92_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759349.1"
                     /translation="MEKVFKQAPLPFSGQKRMFLSHFKQVLNANIEADGKDWTIIDVF
                     GGSGLLAHTAKREKPLARVIYNDFDNYAERLNHIKETNQLRQEIYQIVDEIIPKNKRI
                     SNEIKAKIINKINDFEGFKDLKCLSSWLLFSGEQVATLDELFKHDFWHCVRQSDYPEA
                     TGYLDDIEVVSESFHQLLPRFHDKEKVLLILDPPYLCTRQESYKQENYFDLIDFLRLI
                     DLTKPPYIFFSSTKSEFIRFIHYMVQNRKENWQAFEGAERIVVNASASYNGKYEDNMV
                     YKF"
     gene            complement(35262..37700)
                     /locus_tag="PXE92_000053"
     CDS             complement(35262..37700)
                     /locus_tag="PXE92_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S6 family igA-specific metalloendopeptidase"
                     /protein_id="HDL5759350.1"
                     /translation="MKHTFKLSLLATSIAISLSPTLLASIVRGDVDYQYFRDLAENKG
                     KFFVGATNIPVIDKTGKNIGTFLQVTPTKQVEVESNISPKPNVSLSECFDNESLPGCY
                     EFLYGGGDEDSNDLPVFETVTGETMSIPMIDFSSITRQTGIATLVNPQYVISVNHNQG
                     YRDIQFGDSSSEKADDHHYNYSVVRRNNYMPDPNKERTDLGKGIEKRERNDEGEKLIL
                     DGSGNPTPRWDYHAPRLSKLVTEVAPANEIERTTENVQDFYSVFSDPFIFPMFIRAGS
                     GRQAVVNNERDRLNNGRIEVGNGPFLTGGSVLPVTNGDPSVPGSDFNSRILVAKTENN
                     TINDVFKDHGYGPLTTLGLPGDSGSALFGYDVRTKKWVVLGVYSDYFSENNTLGGDVY
                     KSYWNYHHPHYVRALEKENNAGAINANGARLTWTPSGNTSSIVGGNAPLTVNLADTSL
                     PTLQGHNGNTGDNPWNPQLQHGKTFHILGENNTLSLTENINQGAGAIHFHGNTTVEGM
                     KAGITWLGAGVDIDKDKNVIWKISNPAGDRLSKIGQGTLTINGKGENKGSVSVGDGTV
                     ILNQQADENNKKSAFSELGIVSGRPTVILNSSDQMDPNNIYFGYRGGRLDVNGNDLTF
                     RRIQNSDEGAMVVNHNTAQTANITLTGIVSPTIDQVKVQAITSPDQVSRHLDKDIFTY
                     QRFPHLPTNFIRLKKPLSVAEITAIFNARKVFIDLDFATGLIRENEYFEVLKVTDESA
                     AKQQILAEKIKAAEGTVQGFNGYFGETDPSKTNGRLNITMNSNCSEPTKLRNATTKTT
                     KENRSFTFLILMVF"
     gene            complement(38020..39786)
                     /gene="aspS"
                     /locus_tag="PXE92_000054"
     CDS             complement(38020..39786)
                     /gene="aspS"
                     /locus_tag="PXE92_000054"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDL5759351.1"
                     /translation="MMRSHYCGALNRSHLGQTVTLSGWVHRVRNLGRFIFMQIRDREG
                     IVQVFFDEKDEALFKQASALRSEACVQIQGEVIARDESQINKEMATGEIEVLVKNLVV
                     YNNAEVLPLDFNQNNTEEQRLKYRYLDLRRPEMAEKLKTRAKITSFVRRFMDDNGFLD
                     IETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFR
                     DEDLRADRQPEFTQIDVETSFMTAEEVRALMEAMIHGLWKETLGVDLGKFPMMTWNEA
                     MTRFGSDKPDLRNPLEMVDVADILKSVDFKVFSGPANDPKGRVVALRVPNGAALTRKN
                     IDDYTQFVGIYGAKGLAWLKVNDMNTGLEGIQSPVAKFLNEEVLKALVKRLNLQKDDI
                     VFFGADNWHVATNAIGALRLKVGNDLGLTDTTAWKPLWVIDFPMFERDDEGNLSAMHH
                     PFTSPKELSPEELVQDPENAVANAYDMVINGYEVGGGSVRIFSQQMQQTVFSILGINE
                     EEQKEKFGFLLDALKFGTPPHAGLAFGLDRLTMLITGTDNIRDVIAFPKTTAAACLMT
                     EAPSYANPKALEELAIRTIPQE"
     gene            complement(39892..40803)
                     /locus_tag="PXE92_000055"
     CDS             complement(39892..40803)
                     /locus_tag="PXE92_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HDL5759352.1"
                     /translation="MLYGLAIVLIPLFLGYLITLKNHRHMAIVNRVVSLCLYLILLVM
                     GISLGQIDNILTELPQIGGTAFSLVVILLLSNIIGLVIYDKLQPMKRDKVNQDQLPSR
                     LHLLIDSFKLIGITLLGGIIGYFTKGVVDFPLHASTYVLEVMIFGVGIQLRNSGIPLR
                     EVFFNKRGIYTSIVMVASSLIGGVISAFTLDLSLAKGLTFASAFGWYSLSSVLVNDAW
                     GPIYGSIAFFNDISREILCLFLVPLFMRQFPSTAVGIGGATSLDCMLPIIQKSGGIQI
                     VPLAISFGFIVNLAAPLLLAVFIGLEG"
     gene            40926..42008
                     /gene="dinB"
                     /locus_tag="PXE92_000056"
     CDS             40926..42008
                     /gene="dinB"
                     /locus_tag="PXE92_000056"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HDL5759353.1"
                     /translation="MSIQAKHKRKIIHIDMDCFYAAVEMRENPALVGKPVAVGGNANQ
                     RGVLTTCNYEARKFGLHSAMPTATALKKCPNLILLPVNMALYKSVSAQIHEIFHRYTD
                     VIEALSLDEAYLDVTECERYFGSATWIAQAIRNDIFNELHLTASAGVAPLKFLAKITS
                     DQNKPNGQCVITPDDVQNFVKNLPLAKIPGVGKVTNEKLKQLGFETCGDIQQAEKAVI
                     YRAFGKFGQRLWDFSHGIDERAVEPYRERKSLAVENTLLHDISTLEQAEKIVADLFDK
                     LVFRLQRNWGDTPLTEFKKLGIKLKFDDFSQTTLERTTDGFAYERFGELLQQIFTRRK
                     ERKVRLIGLSVHFPEKKVNKQLNLWE"
     gene            42096..42965
                     /gene="htpX"
                     /locus_tag="PXE92_000057"
     CDS             42096..42965
                     /gene="htpX"
                     /locus_tag="PXE92_000057"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HDL5759354.1"
                     /translation="MAKRVILFLLTNLAITFVLGIVLNLIFKVTGIQGQSTAGILVLS
                     LVFGFSGSLISLFMSKSMALRSVGAEVITQPRNEAEQWLFNTVQRQAQQANIPMPDIA
                     IYHSADVNAFATGATKSNSLVAVSTGLLNSMTKDEAEAVVAHEVAHIANGDMVTMTLL
                     QGVLNTFVIFLARIISTMAASSRDENGNSSTNTLVFWVVDIVLQMVFGVLATMIAMWF
                     SRQREFRADAGSAQLVGKEKMIAALQRLQRVHEPQEMEGSLAAFMINGSRGKELFMSH
                     PPLEKRIEALRNL"
     gene            complement(43019..43513)
                     /locus_tag="PXE92_000058"
     CDS             complement(43019..43513)
                     /locus_tag="PXE92_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5759355.1"
                     /translation="MTEYLTSFFSLFFSEQNQLFTMFLSGFLSATLLPGNSEIIFTTL
                     ASQHLITYGSLSSFSLFNLLLVATLGNSLGSITTYAIGLLLPRPQNTTNRYSQWALAK
                     SEKYGVLVLLFSWLPIVGDIFCGIAGWLRFSLWQSILFIVIGKLLRYLFLLATLYSVL
                     PHIL"
     gene            43714..44538
                     /gene="focA"
                     /locus_tag="PXE92_000059"
     CDS             43714..44538
                     /gene="focA"
                     /locus_tag="PXE92_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HDL5759356.1"
                     /translation="MFSPAEMAKIAEDGAVYKATKNQLYSFLSAITAGGFIAIAFVFY
                     TTTQVGASQMPWGMAKLIGGLVFSLGVIMCVVFGAELFTSSTLTIVARASQRINWLQM
                     FKNWVVVYFGNFVGAISIVLLIWFSGQIMAAKGQWGLVILNTAQHKIHHQWFEAFCLG
                     IFCNIMVCIAVWMSYAGKSLTDKAFIMMLPIAMFVASGFEHCVANMFMIPMGIAISHF
                     ASPEFWTAINVDPTQFADLDVSHFVFKNLIPATLGNIVGGVFFIGLMQWFLYIRKH"
     gene            44628..46952
                     /gene="pflB"
                     /locus_tag="PXE92_000060"
     CDS             44628..46952
                     /gene="pflB"
                     /locus_tag="PXE92_000060"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HDL5759357.1"
                     /translation="MTQLTDAQQKAWEGFAAGEWQTEVNVRDFIQKNYTPYEGDESFL
                     AEVTPATSKLWADVMEMIKVENKTHEPYDIDCDTPSTITSHAPGYIDKSLEKIVGLQT
                     DAPLKRAIMPFGGINMVKGSCKVYRRELKPEVEQIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVITGLPDAYGRGRIIGDYRRMALYGADFLMKDKQRQFASLQARLESGEDIQATI
                     QLREEIAEQHRALGKMKEMAASYGFDISGPATNAQEAVQWTYFAYLAAVKSQNGAAMS
                     FGRVSSFLDIYIERDLKAGKITEQEAQELIDHLVMKLRMVRFLRTPEYDQLFSGDPMW
                     ATETLAGMGLDGRTLVTKNSFRILHTLYTMGPSPEPNLTILWSEQLPEAFKRYCAKVS
                     IDTSSVQYENDDLMRPDFQNDDYAIACCVSPMIVGKMMQFFGARANLAKTLLYAINGG
                     VDEKSGDQVGPKTEAITSEYLDYDDVMTRLDSFMDWLATQYVTALNIIHFMHDKYAYE
                     AALMALHDRDVFRTMACGIAGLSVAADSLSAIKYAKVKPIRTDIEIKNKAGEVVGVAK
                     NVATDFEIEGEYPQFGNNDNRVDDIAVDLVERFMKKIQKLKTYRNATPTQSVLTITSN
                     VVYGKKTGNTPDGRRSGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTF
                     SIVPNALGKDYEAQKRNLAGLMDGYFHHEATVEGGQHLNVNVLNRDTLLDAVEHPEKY
                     PQLTIRVSGYAVRFNSLTKEQQMDVITRTFTESM"
     gene            47187..48212
                     /locus_tag="PXE92_000061"
     CDS             47187..48212
                     /locus_tag="PXE92_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5759358.1"
                     /translation="MSKQDLIRSSVAEYLTFITATGESQVDAVYADENVWLSQKMMAV
                     LYDVDVRTISYHLKKIFSDNELAENSVIQFFWITAQDGKNYHTKHYNLSAIIAVGYKV
                     NSERAVQFRKWATEIVHSFAIKGFAMDDERLKNDGTILGKKYFEEQLARIREIRLSER
                     KFYQKITDIYATAVDYDRTATATKRFFATVQNKLHWAIHGHTAAELIMARANAEKPNM
                     GLTNWKDAPQGKIYPFDVVVAKNYLSDNELAQLQRLVSAYLDMAEDMAERQIPMTMAD
                     WETRLNRFLAATDREILQDAGKVTAEIAKSFALSEFEKYRVKQDLTYESDFDLLVKEV
                     AAKYHAG"
     gene            48461..49201
                     /gene="pflA"
                     /locus_tag="PXE92_000062"
     CDS             48461..49201
                     /gene="pflA"
                     /locus_tag="PXE92_000062"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HDL5759359.1"
                     /translation="MSVVGRIHSFESCGTVDGPGIRFILFLQGCLMRCKYCHNRDTWD
                     LDGGKEITVEELMKEVTTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINT
                     CLDTNGFVRHYSPVVDEMLEVTDLVLLDLKQLNDEVHQDLVGVSNKRTLDFARYLHKL
                     NKPTWVRYVVVPGYTDDDDSAHRLGQFIQGMDNIEKVELLPYHRLGAHKWETLGYKYE
                     LEGVMSPPKEDLERIQKIIESYGHTVKF"
     gene            49332..51398
                     /gene="prlC"
                     /locus_tag="PXE92_000063"
     CDS             49332..51398
                     /gene="prlC"
                     /locus_tag="PXE92_000063"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HDL5759360.1"
                     /translation="MSNPLLNYTGLPAFSQIKPEHIKPAVEAVIKECRETVEKVAQIE
                     NPTWENFYMPQAMAEDKFSRAWSPVGHLNAVKNSPELREAYQACLPLLSEYSTWAGQH
                     QGLYQGYVKLKNSPEFETYSVAQKKAIENSLQDFELSGISLPAEKQKRYGEISARLSE
                     LNSQFSNNVLDATMGWDIVITDEAQLKGLPESALEAAKLSAESKGKKGYRFTLEIPSY
                     LPVMTYCENKALREEMYRAYVTRASDQGPNAGKWDNSAVIDEILKLRHEKAQLLGFKT
                     YSDYSLATKMAENPQQVLDFLNDLAARSKAQGKNELCDLKKFAKAHFGIEHLDLWDIP
                     FYSEKQKQALYSVNDEELRPYFPENRVLSGLFEVIKRIFGMRVEEQKDVDVWHKDVRF
                     FNIFDKNDRLRGSFYLDLYARENKRGGAWMDDCINQKRLADGTLQKPVAYLTCNFNKP
                     IGDKPALFTHDEVTTLFHEFGHGIHHMLTEIDVGDVAGINGVPWDAVELPSQFLENWC
                     WEEEALAFISGHYETGEPLPKAKLEQLLAAKNFQAAMFVLRQLEFGLFDFRLHTEYDP
                     SKQGQVLALLKEVKDQVAVAKGVEWARTPHSFSHIFAGGYAAGYYSYLWAEVLSADAY
                     SRFEEEGIFNPETGQSFLDNILTRGGSEEPMVLFERFRGRKPTLDALLRHKGIVGNAE
                     PVDCTQ"
     gene            51520..52677
                     /locus_tag="PXE92_000064"
     CDS             51520..52677
                     /locus_tag="PXE92_000064"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HDL5759361.1"
                     /translation="MSLDLADIRTQITNLDRNLLKLLAERHRLAFDVVRSKEITQKPL
                     RDLEREKILLQELVNFAEAENYQLDPQYVTQIFQRIIEDSVLTQQNYLQNKLNAQKEE
                     QVSIAFLGMRGSYSNMASRQFAKKYQGTLAELSCHSFNEVFEKVSLGEADFGVLPLEN
                     TTSGSINEVYDLLQHTDLTLVGELAYPIKHCVLANGTVDLAEVDTIYTHPQPAQQCSQ
                     FLAGLDKVHIKYCESSSHAMQMVARLNKPNIVALGNEDGGKLYGLTNIKTDIANQAHN
                     ITRFIVVAKEAVQVSPQVQTKTLLLMTTTQQAGALVDALMVFKNHHIRMMKLESRPIY
                     GKPWEEMFYVELEANIHSENTQKALAELEQVTSYLKVLGCYPSEIIEPVKL"
     gene            complement(52736..52951)
                     /locus_tag="PXE92_000065"
     CDS             complement(52736..52951)
                     /locus_tag="PXE92_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HDL5759362.1"
                     /translation="MFPEFRDLITQLKQNNSHFARLFDKHNELDQRIKNMEANIELAT
                     HEEVEALKKEKLHLKDQLYAILKQESA"
     gene            53141..53956
                     /locus_tag="PXE92_000066"
     CDS             53141..53956
                     /locus_tag="PXE92_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL5759363.1"
                     /translation="MSYKVVFSLLFSLFLSTANANWTKINDVNYTWGPFNIYHITLFT
                     ESGTYVEGTRPLMLTLQYKKPWEGRDFAVSLARTWNNLGIKLPEKELDEVITHLRKTF
                     PDIKPEDTLHYIALEDRGYFILNDKVVSDVFNKAFNDAIVAIWLDPKMDISHQLLDPS
                     YKPRAEAESIKPQVEERVAENLQEPIVNTEVSKELKADSQAVEQAPNKIDIPVADKTQ
                     ASVVNEATQPVENKDKKEPEKLEEKPKEMKIENPEVFISPIYDDILMLTKYCV"
     gene            complement(54018..54662)
                     /gene="adk"
                     /locus_tag="PXE92_000067"
     CDS             complement(54018..54662)
                     /gene="adk"
                     /locus_tag="PXE92_000067"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDL5759364.1"
                     /translation="MKVILLGAPGAGKGTQAQFIMNKFGIPQISTGDMFRAAIKESTE
                     LGKQAKALMDEGKLVPDELTVALVKDRIAQPDCANGFLLDGFPRTIPQADALKESGVK
                     IDLVLEFDVADEVIVERMSGRRVHQPSGRTYHVVYNPPKVEGKDDVTGEDLIIRQDDK
                     PETVLERLAIYHKQTKPLIAYYTAEAEAGNTRYERLDGTKPVEEVSAELAKILS"
     gene            complement(54774..56477)
                     /locus_tag="PXE92_000068"
     CDS             complement(54774..56477)
                     /locus_tag="PXE92_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL5759365.1"
                     /translation="MLYDRVEVVRGATGLTTGAGDPSASVNLVRKRANSISRYTILEA
                     GIGRYADFNTMIDHSQALNNSGSVRGRFIAEHKNGNTFIKNEKERYTTLYGNIEADLT
                     DTTKLGLGVSYQKEKRDAALWGGLPAFYSDGGETNWSRSKNASPEWAYWDNESVNYFA
                     DITQKLGEKWELALKGNYRVGKHNSELFYFSGSSLNRQDGLGWSPWPGKFKNDNTQSN
                     VQLDLTGSFSAWGLEHDAAIGIQYNRAHRNSYAADNSTFDGAFDFNNWNGIYARPNWG
                     SMSEKYYQNLKEFGVYVSTRLHLTDRLSMLLGSRISSYRTEGTFYGSTQNFHANDVWT
                     PYAGLTFDINPQNTVYVSYTDIFKPQSQVDINNKLLSPVTGETYEAGWKGSYFNDNLQ
                     TQISVFETRQDNLAQSAGINPNTLLAYYTASKGAKVRGFEVEASGNVTEKLKLSAGYT
                     QWKGDDASGNPINTTQPRKQFKLFATYDMNRLVQGLTVGAGVNWQSRIYTKHATYGEY
                     GQKAYTLVNLMARYQFNDNFSAQLNIDNLFDKKYRNALSFSQYSYGEPFYTRLNLRYE
                     F"
     gene            complement(56512..56910)
                     /locus_tag="PXE92_000069"
     CDS             complement(56512..56910)
                     /locus_tag="PXE92_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5759366.1"
                     /translation="MNTLSKAIKLALYSSGIGFISTAYAETVTHLDTVEVSAETPNAS
                     SEETGRYAQKKAKGSNGMALSAKDTPQSVTAVTHQQIRDQNLNTIAKALEATHGVSVS
                     LLDRGRYSFSARGFGIDKVKVDGMDLKVSK"
     gene            complement(56938..58074)
                     /locus_tag="PXE92_000070"
     CDS             complement(56938..58074)
                     /locus_tag="PXE92_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5759367.1"
                     /translation="MIAFLAGGFLLFFTNNLIGIVSRIYDTLLPVGAFTATLGAPLLI
                     FLVLRQRKAQFEASNTAYFPVKRLNSWKLPILLLCAGVILFCLLQIIAPTMNGWAISI
                     DENLMSSYRLPRSLSAIATGAMLAVSGSLLQILTRNPMASPEVLGVSSGATIAAVLSF
                     LLFPTLSSISFLLFGVLGSLTVLALIMWLSRKLQPSALMITGVAIGALVSGLMAIIQL
                     SGSPRLTAVISWLSGSTYYANPNTVWILLSVAILLISATLLFIKPLRLISLGETVSYH
                     LGLEVKKVQMIVLLLIALMSAASTLAVGPMSFIGLMTPHLAKNLGAITPEKQIPISAL
                     LGAMLMLIADWLGRYLIFPYEIGAGIIASILGGIYFLLLLKQHK"
     gene            complement(58071..58886)
                     /locus_tag="PXE92_000071"
     CDS             complement(58071..58886)
                     /locus_tag="PXE92_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL5759368.1"
                     /translation="MKSSFLLIGCILLSLVTAVIRLNMVWEWEWQLLLINVDLLPINQ
                     AAVKAALLPEMTTSFLAGGLLAIASSGLQHIVRNNLASDSTLAVSSGAQLALMIAVIF
                     FPAAELFSSFWIALLGSLAAIVLVLFIAKASKLNPLTLILGGLIVNILFGAIASLLTL
                     FYFDFLFGVMVWGSGSLLQDGWATSITLAITVVVAFFIFVLLSRPLTILSLDDEQARR
                     LGAPVNLLRYLVIFVCAAITALVVSKIGVIGFIGFAVQVWLILPKYDIYYFAS"
     gene            complement(58886..59767)
                     /locus_tag="PXE92_000072"
     CDS             complement(58886..59767)
                     /locus_tag="PXE92_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5759369.1"
                     /translation="MMFRQYKRFIFLFILQISTAFAQPNIFTPDWSIASALTEMGNPP
                     IAMGDKRIYPLWSHRPIQPNSVLDIGARYQPNRELLAQLPVELVLSNFFYAHLASVYP
                     KEIPQIDVLFDGGNTEPQQHWHTYQKATRMIGTEIKNPNAAEAYLTKTEQTLAQWGKE
                     ILNSNPDIDYYSVVQFGSPRELRIYASNSMFRVAFDLMGLKQADLGVGDRWGNKLIPV
                     SDLAKLPERTCLIVISPFSKMTQADLENSYIWQRLGFGKNRCMKVLPPVWLFGGADSI
                     SHFAEFLHNAMTQGEKE"
     gene            complement(59764..60432)
                     /locus_tag="PXE92_000073"
     CDS             complement(59764..60432)
                     /locus_tag="PXE92_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5759370.1"
                     /translation="MAHNGSGKSTLMRLLSGDITPTSGSILVDGLPLHQLSTKEAAKH
                     IAYLPQRLPEAADFLVQELVALGRFPYQKWLQKPTEFDVQIVEQAMESTSVTQFAKQP
                     VNSLSGGEKQRVWLAMCLAQQTPYLLLDEPLAALDIVYQVEVMQLIRKLVNEQGLTVI
                     IIIHDINLASQFCDEIIALKQGELCIQGSVDEIMQEQKLLEIFGLKLHLFNHPAGLHK
                     VAVL"
     gene            complement(60776..62059)
                     /locus_tag="PXE92_000074"
     CDS             complement(60776..62059)
                     /locus_tag="PXE92_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5759371.1"
                     /translation="MTACHEPKRSIWQQIFTKNMLLCVYTGFCSGLPLFVLIQLMPAW
                     LTSANLDIKTIAAFTLTSLPYTWKFLWAALLDRYFPPFLGRRKSWIFISQIGLLVILA
                     SFGLFNPVQDISIIVTLSVLLAFLSATQDIVVDAFRREILSDNELGLGNSIHVNAYRI
                     AGLIPGGLSLFLADHYAWDTVFLITAAFLVPCLFVTLIIAAEPNHKPIDRSKPFYMAF
                     VDPFKEFFTRKGVAGAIGLILFIFLYKLGDSLATTLQTKFILDMGFTKSHIAGIVKIT
                     SLWCSIGGGIIGGVAMLKLGVNRALWLFGFVQLITILGFAYLASFEHFPTESIGAAEL
                     WKLGLVMAGEYLGVGLGTAAFVAFMARETNPAYTAMQLAIFTSLAALPSKMLGAYTGH
                     LVEMMGYYQFFWLCFFIGIPGMLMLFKVAPWGQAE"
     gene            62225..65941
                     /gene="metH"
                     /locus_tag="PXE92_000075"
     CDS             62225..65941
                     /gene="metH"
                     /locus_tag="PXE92_000075"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL5759372.1"
                     /translation="MNTQHRTELLQNALTERILILDGAMGTMIQKYKLTESDFRGERF
                     KNSTIDLKGNNDLLTLTQPLLISAIHEKYLAAGADIIETNTFSATTIAQADYELESIA
                     YELNLVGAKLARLAADKFSIPEKPRFVAGILGPTNRTCSISPDVNDPGFRNITFMQLV
                     EAYAEATRGLIEGGADLIMIETIFDTLNAKAAVFAIETVFDELGVKLPIMISGTITDA
                     SGRTLSGQTTEAFYNSLRHAKPLTFGLNCALGPKELRPYVEMMSKISETFVSVHPNAG
                     LPNAFGGYDLGAEEMATYIKEWAELGWLNIVGGCCGTTPEHIQAFAEATKGVAPRKLP
                     EIPTAMRLSGLEPLTIDDNSLFVNVGERNNVTGSAKFKKLIKEEKFAEAIEIAISQVE
                     NGAQVIDVNMDEALLDSKKCMTRFLNILATEPEAAKVPIMIDSSKWEVIEAGLQTVQG
                     KPIVNSISLKEGEEKFIHQAKLCRRYGAAVVVMAFDEVGQADTEERKVEICTRAYRIL
                     VDQLGFPPEDIIFDPNIFAIATGIEEHNNYGVDFIQACERIKRDLPHAKISGGVSNVS
                     FSFRGNNVVREAIHAVFLYYAIKAGMDMGIVNAGQLAIYDDLDPELREAIEDAVLNHR
                     HDTTDRLLEISEKYRGVKVESADESAAEWRNLPVAERLKHALVKGITTYIIEDTEEAR
                     QQFASPLEVIEGPLMAGMDVVGDLFGDGKMFLPQVVKSARVMKQSVAYLEPYINATKQ
                     KGSSNGKMVIATVKGDVHDIGKNIVSVVLQCNNFEVIDLGVMVPADVIIETAIREKAD
                     LIGLSGLITPSLDEMEYFLGEMNRLKLDIPVLIGGATTSKEHTAIKLYPKYNYPVVYT
                     ANASRCVTVCATLMNPEAKAEFWEKTKAEYEEIQRKFAVRKPLRNGLSIEEARANRFD
                     GFSGEWADYVPPTPKQTGIIEYKNVPIATLRKFIDWSPFFMLWGLMGGYPDAFDYPEG
                     GEEARRVYNDAQRVLDEFEQNGKLNPSGIMGIFPAVREGDDIAILNEDRTACIGKSYH
                     LRQQSERGKNSKSPYNLCLSDFIADRESGQQDWFGMFAVCAGIEEHYLVESYKAAGDD
                     YNAILLQAVGDRLAEAMAEYLHFELRTKVWGYTVEDEDNGRLIREEYIGIRPAPGYPS
                     CPEHTEKQIIWDLLEVEQRIGMKLTESYAMWPAASVCGWYFTHPTSNYFTLGKIDEDQ
                     VLDYAKRKGWDELTAKKWLSVAMKQDVKSQAENI"
     gene            66049..68052
                     /locus_tag="PXE92_000076"
     CDS             66049..68052
                     /locus_tag="PXE92_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDL5759373.1"
                     /translation="MIEKQNYHLVQLLKDSNYQLTQFSPAYIKKLEESIFLKSGKNGD
                     IPHIQCLVRKKDIKLTPEEAVRQLYLMNLHYEYDYPFERMELEYSVVFGREKKRADIV
                     IFDRDNPNAVYIMVELKKPKLKDGKEQLKSYCNATGAPIGVWTNGESISYYNRRDPNY
                     FKDIPDIPNAQQKLSDLLQERWTIQDLIDNDKIAKQRKSLKDLVIEMEDEVLANAGVD
                     VFEELFQLIFTKLYDEMESTRNKSRYLEFRNYGDTESELKAKIQSLFDRAKNKWEGVF
                     AESAKINLSPSHLAICVSSLEEVKLFNSNLDVVDEAFEYLINKSSKGEKGQYFTPRYV
                     IDMCVKMLDPKPEETVIDTAAGSCGFPVHSIFHVWEKQLKARGLERSHLFTAEEKLPE
                     QTDYVKEKVFAIDFDEKAVRVARTLNLIAGDGQTNVLHLNTLDYERWEDFTKEEEWND
                     VYGEGWKKLRKLRKTKNENRDFQFDVLMANPPFAGDIKETRILARYELGKNSKGKQQS
                     KVGRDILFIERNLDFLKDGGRMAIVLPQGRFNNSSDKYIRDFIAERCRILAVVGLHGN
                     VFKPHTGTKTSVLFVQKWHDELCPKVEDYPIFFATMQKSSKDNSGDKIYVKNADGTLK
                     LDNHQHLIVEHDLFNHDNSTQDGIAEAFIEFAKKEKLSFVGKD"
     gene            68151..>69490
                     /locus_tag="PXE92_000077"
     CDS             68151..>69490
                     /locus_tag="PXE92_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5759374.1"
                     /translation="MDSTFFLKKYLNHPSFNFPLSLNEVSLIKSGTTPTDRDDNLKEG
                     VVLLKTNDIRNNLLNKYSSVDYFISEDINEKMISSQLKEGDVLVNIVGATLEVVGRVA
                     YVSSTFPKANITQAMSFVRLKSKYNKELLPTYLFAFLQSSYGKIQINRNARPTGQYNL
                     NNEELGAIKVPLIDLETQKQVDKIIKQSNDFVQKSTQSYQEAETLLLENLGLRAFQAD
                     SNPVNVKSLKESFLQTGRLDAEYYQTKYEQYWNLIQSQDYVFIRDEYLHITQKPDWTK
                     PMYQYIEIGDVNIGDGSYQTNWIETQELPANAKTQAQTGDILISTVRPYRGAVTIIGE
                     NDQDLVVSGAFTVLRRKENSVFNNEVLKVLLRSELYKDWLLQFNVGTSYPVIKDNDIL
                     NLPIPKISGEIQEKIAEYIRQSNDLRQQAQNLLAQAKNNVEFEIENNSFNINEL"
BASE COUNT        21630 a        13760 c        15623 g        18477 t
ORIGIN      
        1 cacaaaatgg caagaaataa aagagttcga gatatgagta atttcgaaat tcgtggtgag
       61 ctgatgaaaa tcggtaagtc cttatctcag ttaggtattg agaatggatt agcaaaaacc
      121 acagttcgta atgcgttaga taagccatat cccaaagggg agcaaattat tgcaaaagcg
      181 attggtaaaa caccgcagga aatttggccc tctcgttacg aataaggagc ttttatgaag
      241 gaatggtttt tagccaaaga aatcgcagga ttatctggag ttccagaatt accgaatagc
      301 gtttcaagat tggcaaccaa agaaggatgg caaaaacgac aaattcaagg tgtaagaggt
      361 gttacttacg aataccacct caccagccta cccattgaaa cccaacaaca acttagacta
      421 aacgccgccc ttgcggtaat accgcaagcg gcagaactac aacccaaacg agacgacccc
      481 gcacttatcg caaggctcaa taatgccacc gataaaggca gggataaagc aaaaggcaag
      541 gcagaagcct gtatgcagtt gcaagccttt ctcgaccaag ggtttagtta tacgcaggca
      601 gaagcgggag cggcaaccgc taaaaatgtg tcgcaaggtt ctttaaaaaa ttggtactac
      661 aaagtgaaag gtcaccccgt ccatttatgg caggcgatct taatttccga aagcggtagg
      721 agtaaaaagc cgcagctgaa agccaagatt actgaagaag cgtgggactg ctttttggcg
      781 gattacctcc gccctgaaaa gccggattta cgggcaagtt accgccgaac ccaagccatc
      841 gccaagcaat acggctggca aatagcaagt ttacagactt tccaacgccg agtgttggcg
      901 gaagtgcctt acgaggtgat tttgctcaaa cgggaaggag caaatgcggt tgccaagtta
      961 gtgccggcac tacaacgcac ggtgaaagat attctcgcag gagaatggat taacggcgat
     1021 ggctatcaac acaatgtgtt tgtgaaatgg cacaccggcg agattgtccg ccctaaaacg
     1081 tggttttggc aagatgttcg cacccgcaag attttaggtt atcgaacatc gatttcggag
     1141 aatactgaca gcatacgcca cgcattaatg gatgtgattt ttaacgtagg cataccgaaa
     1201 acgctcacgc tggataacac ccgagcagca gcgaataagg caatgaccgg tggtattgaa
     1261 aaccgctacc gctttaaaca taccgagtta gacccgaaag gcattatgcc gattttaggg
     1321 attgatgtgc attttacctc aattctttat ggtgaaggac acgggcaagc caagccgatt
     1381 gaacgtgctt tcgggcgagg cggaattggc gagaaaatag ataaacgccc tgaattaagt
     1441 ggtttctata cgggcagaaa tgcacaagaa acccctgata actataacgg cggtaaagac
     1501 ggtgtggatt acaacacatt cttgaaagcc atagcagcag ggatagaaga gtacaactct
     1561 caaaccgaac gccataccga aatgtgccga ggagaattga gttttaacca agtttgggag
     1621 cgggattacc acccaagcaa cgtaagacaa gccagccctg aacagttgcg gttactgttc
     1681 ttacaggcag aaacggtcag cattaaacgc aacggcagtt ttacgctgaa agcagccggc
     1741 aaactttacg gcttaactaa cgtttactgg gcagaaagcc tgatagggat aacggataag
     1801 aaagtagtgg cacggttcga ccccgatgac ttacacggca acgtgtatgt gtacaaccta
     1861 gaggggcaat tcttagccga agcggtttgc cgagaggcga aaggatttgg tgataccagt
     1921 gcaagccgtg agcaaggtcg cttatatcag aaagtagtga aaagtgccaa agctcaagcc
     1981 gaagcccttg aattactgga agctcacgaa ctggcaagcc tcgccccaca agtggacgtg
     2041 cctgagccga tagagaagaa ggtaaaagag gtgctggtga aagaagattt tatcgtggat
     2101 ttcaacactg tgcgtaaagc aacggtggtg gaagaaaccg aagagatcag tatttttgat
     2161 gaagtgttac tgaaacaaga gaaacaactt cgcatagtgg aataactagc ggtcagtttt
     2221 tgcaaaaaat ttgcaaattt ttctaaaaaa acgaccgctt gaaatgagat ttaaacaggg
     2281 tttaaacgcc tttaaggagt aaaaaatgac attaacaggg caagcttacc gagtgatttt
     2341 caaggaactc aaagagcaac aagagagtga atttgaacag gctttcaaga aagggattgc
     2401 caaaattcag cagaatcaaa ctcaggaatc cattctggta aaccgtgata tgtttcaagc
     2461 tgaaaagcta acactgcttt cacaaaagtt ggaagcggtt gagcaattac ttcgccttga
     2521 attaaatcag ccgaattttc aagcaaaact tgaagactac gctgacgcat tacgaacaac
     2581 cattttaagt aaagtagcca aataagagct ttagactctt gaaggcttaa catctgagcc
     2641 acttttttta ctgtcggcat tataccgtca agatcatcaa tagaagttaa atgatgaaaa
     2701 gaggaatggt attcagctaa acaaaaattg attgtactaa gtttaaacaa agtaatgcaa
     2761 tttttcatca cgatggcatt tgctcgtttt aacttaaaac cagagaaggt tgcacgagca
     2821 gaatcaaggg ctatttgatg aatttcatca tctgttaaag aacgaaagag cataaaaacc
     2881 tccaaacaaa aacaggacac cattatgaca ttaatcgacc aaattaaaca acacatcgcc
     2941 gaaagcggca gttctcaggg gaaagttgcc aaagaagccg ggattaatgc cggggcgtta
     3001 tcggcttacc tgaatgaaaa ttacaaaggc aataatgaag aacttgaagc aaagctgatt
     3061 gcttatttag agcgtattga ggcgaagaaa agagagtttg tcgaagctcc gagttttatt
     3121 gaaaccaaaa ccgcaaacca aattttcggt tcgttacgat ttgctcaaaa tactggcgtg
     3181 cttgccatta ttcacggtgc gagtggcgtg ggtaaaacac aagcggctag agagtatcgt
     3241 aaacgctatg cgaatgtatg gttggttacc gcaagccctt ctcgttcctc attaagtgag
     3301 gtgttatatg aaattgctct tgaacttgga atgaacgatg caccacgccg caaagggaca
     3361 ttggctcgtt taattgttcg caaaatgaaa ggcacagcag gtttattaat tattgatgaa
     3421 gcagaccatt taccttacga agccttagaa gaattaaggc tgttacaaga agaagtagtg
     3481 aatgaaagtg acatcggagc tggtgttggc ttagtgctga ttggcaatga caaagtctac
     3541 acccgaatga aaggcggaat taaccctgct cacgaatatg ggcgactttg gtcacgcagt
     3601 gccaaacgca ccagtattca gaaaaccaaa aaagaagata cccaagcggt agccaaagcg
     3661 tgggggttga gtgaaaacca agaagcactc aaggtaatgc aagccattac tgaaactggt
     3721 ggcggattac ggattctgac acacacctta cgattagcag cgatggtagc aaaagaccga
     3781 atgattccct taactgccga tttaattcag ctcgcacgta aagatttact ctcaacagga
     3841 gattaacaat gagaacccca aaacccaaac acagttttaa ccgcaccaac caagcagcgt
     3901 gccgtttttt aaaacaaacc caaaaggcaa ttatccgctt aaacagtctt ggctttacgg
     3961 tgctgaatat tgattttacc cgtattaagc cccgcattga ggtggaaatc ggcaataaca
     4021 agcacattgc tcaaggcttg atttatgagg gtaaagccta ccgctacagc ttcggtaaaa
     4081 gcgaagattt aggcagatgg gaaggctact acaccatgct ggaaggtatc agagtgtggt
     4141 ggcgacaagc agcaattcac taggagaaaa acagatgaaa accttagcac tattaaccgc
     4201 ccttttaggg cttgtagggt gtgatttagt ccaaagcaaa caagctaaaa attacatcgg
     4261 caacaattta actgaaatct gtatagataa cgtggtgtac ctgatttatt ccggtgataa
     4321 aaaaggcgga attaccccga aagtaaataa agatttttac ccttatacct gtacaaacaa
     4381 agaggaaaga caaaatggca aaacccgatg aaacacccat tacaaaagca gaatgtcaat
     4441 ctcagcttgc agagttgggg gtgcaatata aaaaactgcc aatggcaatt acaagacata
     4501 tttgtaatgc cacaaccaat atacacggca aagttataaa ggtcagtgtg gtagagagag
     4561 ttggatatgg cgtccagatt accgcacaag gtaacgagaa atcttgctta gtaacctatg
     4621 aagcaatgtt aggtatggca gaagcaatgg gattatttga tgaagttaag gagcaaaata
     4681 atgactaaaa aaacaaccag agtaaaaagt gcaacccaaa gtgcgattta tcaaagccga
     4741 gatgaagtgc aagtggctat aaaaatcatt ggtgataaac agcgtgaatt gcaacgttta
     4801 gctacggcaa tgaatgatga attagctgct attagtgcca gttatgctca acataaccgc
     4861 taccaacatt atgccgagaa agcggctgaa gcagaacgca aaggcaacta taaggaagct
     4921 caagaccatt gggaagttgc aaaattatca gcaaaaaaga ccgctaaccg agactgggcg
     4981 gaacaacgag cggaattttg taaacgtatg cacaataaac cgttttaggg ggaagtgatg
     5041 acagaaaccg taaaagcaca acttaacagc caattaaatg aggcaattat ccagttgata
     5101 caagctcaaa agtatttaaa ccaagatgat gccattcgca gtggagtgta tatcggtacg
     5161 gtgcaggatt tattgccaaa ggtgcattta aagttattaa cggcaaatcg taaacattga
     5221 tagagatgag gtaaaaatgg ctattacaga agaacaatgg aaagaaatta agcaaaagct
     5281 agatagtatc atagggagag ttaaatttag atacaaagag catttactca cggtagatgt
     5341 tgtacaaatt aagcgatctt taaaattggc tgtgtatgtt gatggggaaa ttgatggagc
     5401 ttggacaaaa gaaggacacg aaattcgccc ttatttagaa gaagtttggt atcgcaaaga
     5461 acgccctttt tttaatgcta aggagaagaa agagtataga ggtttaatga gcaaaaaaaa
     5521 actgaatgaa aaaatagtaa cctactcacc tatgtttcca tcaccaactg cactgactcg
     5581 tcaatataag aaactagatg gcttagagtt gattgaagtg atttaaaacc catttacagc
     5641 ccatttaacc ccgagttatt taaaggacaa caaaatgaat aaaaacgaat tttttaagaa
     5701 ataccaccta gagggttcac tagctatttt ggatttggat gcaaatgacg atcaaagcca
     5761 attctgttac caagcattgt tggagtatag agaactcccg ttagacacat ttcttgcaga
     5821 gtactcagat gatgaggata tgacagagtc agagtttatt gagttaatgc ttgatgaatt
     5881 agagtggatt atccgcagag ctaagaatgc taaacggttt gttaaaaaac gacaaaaaac
     5941 gatgagggag gaaattatgt aacagctcaa cccaaccaac gccacatcat ccgtctagct
     6001 gagaaacagg tgtggcgttt gttttaagtg ggcaatcaaa agcgataacg tttttaattg
     6061 tttatttatc ggagtaacaa atgacagaca aagccaagct aatccagctt atccatattg
     6121 ccaagtcgca actagcaatg gacgatttaa gctaccgtga aatgctgaaa cggctcacca
     6181 ataaaaccag ctcgaccaaa tgcacggtgg tcgagttgca caaagtctta cacgaactgc
     6241 aaaccaaagg agcaaaagta aaatattttg ccaaacgcag caaaaaaccg accgcttaca
     6301 gcccggcaac aggggaaaca gcggtaaaaa gccaaattgc tcataaaatc cgagcggtat
     6361 ggataacaat gggcaaacac ggatttttaa acgacccaag cgaaaaagca ttaaatgctt
     6421 atatgcgtaa ggttatcaat aataaaacta gaccaacaat attattaaat gtctctgcat
     6481 tagaggctgg agatgcaagt tatatgcttg aaatcctcaa aaaatggcat aaacgtgtga
     6541 tgattaaagc cctaagcaaa agttgcacag ttgatccaaa gataagctac gatgaattag
     6601 tggagtggta caatgaagtt atgtagatgc ccgatttgcc acagtgatat acacctagaa
     6661 gctctcgtag aagatgaagc cgggcgtgaa ctactcggca aaatcagcca attaacacac
     6721 ggtgttgctc aaccgatggt tgcttattta ggcttattta aaccgcaaaa aagtaacctt
     6781 aataactcaa gagccttgaa aatactcaat gatgtattag cactctaccc ttgctcattg
     6841 ctactggctc aagccctatc tgaaacggta gtaagcatac gcaaaaaacg tcagcaagca
     6901 atggaaaacg ggcagaaaat tgaaccgcta ccgaaccata actatttaaa atcggtgtat
     6961 gaaacgcaaa aagtccattt tgctgtggtg agaaccggca aaaccgaacg cgaaacaatg
     7021 aaagccgaac tggaaaaaac acgcaatgcg attgcctatg tgcaacggtt tgttgattta
     7081 ggacgtgaag aggttgttaa aaatagccct gagtatcaga tttggttagc tcataaaccc
     7141 aaataacaca agccaccaaa aggtggcttt ttaacttttt gaaagtgcga taaaacctga
     7201 tttaaacagg ctttaaacgg gttttaagat tgagtttaaa aaaatatttc acaaaataag
     7261 aatggttttt tatacaataa ccgaaacggt ttttggatag gaaatagaca atggaattag
     7321 tggatatttt tgaagaaaaa gccccggaag tgttaaccga tttagccaaa catattgaag
     7381 tcgcattaga agaaaaatgc caatttagcc ccgaaaaggc aaagcaaatc ggtattgata
     7441 ttgcccaaca aatggctcaa aactggggtg gcgaggtaat ttatattcct cgcaatttgt
     7501 tgatggctct taatgagcga gatatgaaaa tttacgaaga gtttaacggt aacaatcacc
     7561 gtgaattggc tcgtaagtac aatgtatcaa tgcagtgggt atataaaatt gtgaagaaag
     7621 tccataagga cgaagttgcc cgcaggcaga tgagtatgtt tgagatgtaa atcatttttt
     7681 cccagccctg atcattttca gggctttttg tgtattaaaa gaacgcagtc tttaaacccg
     7741 tttaaaatca atttttcagc aaattcttta aactcctttt aaagcaattt taataggagt
     7801 gtgctatgtc tcaaaatctt acctttcgcc aaatttttga ccgtttaatc ggacacgagg
     7861 gcggctatgt caatcaccca caagacccgg gcggagaaac ccactgggga attaccaaac
     7921 gtaccgcggt tgctaatggt tatatgtatg caatgaagaa tatgacccgt gagcaagcct
     7981 accaaatcta cgaaaaagcc ttctggcaac gttatcgttg tgcagagctt aagccagcag
     8041 ttgcttatca atttttcgac gcagtggtta atcacggttt tggtaatgct agtcgtatgt
     8101 tacagcgtgc agtaggcgta gcggatgatg gcattattgg caatattacc ctgcaggcaa
     8161 ttaatgcaaa atctgaaagc gatctcttaa tgctatttaa tgccgaacgt ctgaagtttt
     8221 acacaaaatt acgcaacttc cccacttttg gtaagggttg ggtcaatcgt gtggcaggca
     8281 atttagaata cgcagcacaa gataatgagg tttaaaaatg gcaaaactat ttaaagaact
     8341 actctcaacc aatggcacat tatccaccac tagcaccgtg cagttttttg gcacattgtg
     8401 tgtatttggt ttaatggttt atgcagtaat tacccaacaa ccttatgccg aaagcctatt
     8461 aaataatgtg ttgatttatc tttttggggc aactaccgct aagggtgtag taaccagcta
     8521 tcaagccaaa attaaagggg gtatccataa acaacaaagt acatttaaag aggaggaggg
     8581 atgttaatgc aacaaatttt aggcgtgatt ggcgtcatcg cagcaatatt gtcttatgct
     8641 ttgtttaaaa gctggcaact aaaacgtgag cgtaaaaaga atgccatatt acaagctgaa
     8701 aaacagcaac aagcggttga aattgagcaa aaaaaagcag aggtaaaata tgtgtatata
     8761 tcaaagaaaa acaatgaaaa agttactcgc agctctgcta gcgatattga tgacaagttg
     8821 cagcaacacg gttacttccg tgacaacaac aggttgcacg gcgttcagtc tgatttatcc
     8881 gaaccgtgcg gatacgctgg aaacgaaacg tcagattctt gctcataatc tgacttttga
     8941 ggaaatttgc caaaatgaaa tacattaaaa aattacgtaa acgctggcaa atttggcgtt
     9001 ttttaaaaaa tcatcctgag gttgcacaac gccgagattt attagcgatt gccattaaac
     9061 agggcgtaga aaaccctgta gggcgtgcaa gacggaggga gccataatgg atttatttac
     9121 agtcttttgg gagtctatcc gtgctaactt tggttttatt tctgcgttac tcaccattgt
     9181 tgttacggca ttttggctca agctagatag caaatacgcc aagaaaaatg atcttggtga
     9241 attgctggaa attgccaaaa gccacgataa ccgcttaacc accttagaaa ccaaggtaga
     9301 aaacctgcca agtgcggtgg acgtggaaaa gctgaaaacc ttagtcactg atgtaaaagg
     9361 cgataccaaa gccacctcaa agcaggtgga tagtatcagc caccaactcg gcttgttatt
     9421 agaagcaaaa ttaaaggaat gatatgtcgt taagagattt actcactcaa gaccaacggc
     9481 tggtgatttt acgctcatta gcggaagccg gctatgatgc caatgagtca attattagtg
     9541 attgcctaga tttatacggt cacgatatta gccgtgattt agttcgcacc catttaagtt
     9601 ggcttgaaga gcaaggctta cttaccttag aacgtttgcg agatggctat atggtggcaa
     9661 gcattaccca gcgtggctta gatgttgctc aagggcgtgt tgtggtaagt ggcgttaaac
     9721 gccctcgccc taaaatttaa acggtattta aggagcgttt aaatgagcga gaaaaatact
     9781 cgtggtcgag catcaaaagt cgatttactg ccgccgaata ttaaaaccca actggcgatg
     9841 atgttgcgtg ataagcagta ctctcagtca caaattttag aagaaattaa tgacttaatt
     9901 cgggattgtg gcttgcctga tgaaatgctg ttaagcaaaa ccggattaaa ccgctacgca
     9961 agccgtatgg aacgcttagg ggcaaaaatc cgtaatgccc gggaagttgc cgaaatttgg
    10021 actaagcaat tcggcgaaat gccacaaacc gatattggca aaaccctaat ggaaatggtc
    10081 aagcaaattg cctttgaaac ctcattgaaa ttaggcgaac aagaaggcgg tattgagcca
    10141 aaacagcttg ctttgctctc gtctgctatt caacgtttag aacaagccga aagtttgagt
    10201 tttaaacggg aacaggcaat ccgtaaagag gtcgcacaac aagccgctga aaccgctgaa
    10261 aaagtggtgg tgcaagcggg tttatccgct gaaaccgtcc gtacgattaa agagcaaatt
    10321 ttaggaattg cataatggca ctactcaata acagaccgct gaatgaatta gcccctgaat
    10381 gccgttcgtt tttagagagc attcacgctt ttaatcctaa cgaactgtta ttgggctatc
    10441 aaaagcggtg gattgcggac gacagccaac tcaaaattgc cgaaaaaacc cgccgttgcg
    10501 gtttaacgtg ggcagaagca gcagataacg ccttaatcgc aagcacccgc aaatcagacg
    10561 gtggctctga tgtattttac attggctcaa ataaagagat ggcacgtgaa tatatcgatg
    10621 ctgtcgcaat gtgggcaaaa gcctttaatc gtgtggctgg agaaatccaa gaagagatct
    10681 ttgaagacga agataaagac atcttaacct atgtaatcta cttctcatcg ggttttaagg
    10741 tcaaggcatt atccagtaat ccgaaaaacc tgcgtggtat gcagggcgtg gtggtgattg
    10801 atgaggcggc attccacgaa tacttagcgg aagtcttgaa ggcggcgtta gctctcacaa
    10861 tgtggggggc gaaagtccgt attatttcga cccacaacgg ctcggaaaat ctgtttaatg
    10921 aactgattac cgatagccgt gccggccgca aacgctactc tgtgcatacg attacgattg
    10981 aagatgcctg ccgtgatggg ctatatcaac gtatctgcca agtagtgacg aaaaaaacgt
    11041 ggtcaccgga agcagaaaaa gagtggattg aaaacctact caacgacacc gccagcgaag
    11101 aagacgcatt ggaagaatac ttctgcgtac cgaagttcgg ctcaggctta tggctctctc
    11161 gtgctttgat tgaacggcag atgagcgaag ccacgcctgt tatccgcttt acggcaaaag
    11221 atggtttcag ccttgtggct gaaccgacac gctatgcgga gattgccgaa tggtgtgaat
    11281 tagaacttga gccgatattg gcaaccctta accctgattt gttgcatttt atgggcgaag
    11341 actttgcacg cagcggcgat atgacctctc tggtggtgct tgctcagcaa caaaaccttg
    11401 ttcgtaaagt cgcctttatt gttgagcttg gcaatatgcc ctacaagcaa caagagcaaa
    11461 tcgtgatgtt tatgcttaaa cgcttaccgc attttgccgg tggggctttt gacgcccgag
    11521 gcaatggtgg ctatttagcc gaagctgcac gagatgaatt tagcaccttg attgactgcg
    11581 tgcagttatc ggaaaaatgg tatcgggaac acaccgcccc ctttaaagcg gcattggaag
    11641 acggcgagct ggaagctatt ccaaaagatg cggatatttt ggctgatttg cgttcatttc
    11701 aggtggtgaa aggcgtacca cgcataccgg ataaacgcac taaaagtgca gatgggaaaa
    11761 gcaaacgaca cggtgatacc gcaatttctt tgctgttggc tcattatgcc agccgacaat
    11821 tagtgcaaat gccagttgag ccggtatcac gccgtccacg ccatagccaa caattaacag
    11881 aaggatatta acaaatgaga tatgtaccac tttgtttaat gatgtgtgcc tcattctacc
    11941 tatttattaa caacattgac ggctggggtt ggggaattct tttatctttt attttagcga
    12001 gtgcagctta tggcaaagaa gaataattta attagtgaaa ttgccacccg tgccagaagt
    12061 attgattact gggcatttgg ctattatctg ccgaaccctg acccgatttt aaaacgaatg
    12121 gggaaagata tttccgttta ccgtgagttg ttatcagacg ggcaagttcg ctcaggcgta
    12181 cgccgtcgaa aagcggcgat taaaggctta gagtggcgaa ttaccaccac taacaatgag
    12241 aaagtggacg agcagattta tcaaatattt aaccgcttgc cgatgaataa cctgattacc
    12301 gaaatgctca atgcagcact ctatggctac catatcagcg aggttatttg ggcaaaagag
    12361 ggtgagttat ttgtgccaac agaaatcatt ggtaaaaagc ctgaatggtt tatgtttgac
    12421 gacgaaaacc tactgcgttt ccgtaccaaa gaaaactggg cggacggcga attattacca
    12481 gatgataagt tcttgcttac tacgcaagaa gccacccaag ataatcccta cggtttaggc
    12541 gatttatccc tctgcttttg ggcggcgacc tttaaaaaag gcggtttcaa atactggttg
    12601 gaatttaccg aaaaatacgg ctcaccgtgg ttgattggca aacaccctcg ccaagctcac
    12661 aatacagata aagagcgact agctgatgcc ctagagggaa tgattagctc agcgattgcg
    12721 gttatccctg aagatagttc ggtcgaaatc aaagatgcag cgggcaaatc tgccagcacc
    12781 gatgcctttg aaaagttcct caatttttgc aaggcagaga tcaatatcgc cctacttggg
    12841 caaaaccaaa ccaccgagca agaaagcaac cgtgccagtg cacaagtagg cttggaagtt
    12901 atggaagata ttcgctcgga cgaccaagcg atgattgaag ccaccttcaa caccttgttg
    12961 cagtggattg tgaaatataa cttcaatgtg gaacaactgc cgaagtttga attttacgag
    13021 caagaagcca tcaacaccga ccaagttgaa cgagacagta aactccacgc aatgggcgtg
    13081 cgtttttcca aagcctactt tgagcgtgaa tatggctttg aggcgggtga tattgaggtg
    13141 caagcggtcg aaaaagcgga aaaatctgca aataccacag aatttagcga aggacaacgc
    13201 cgaacccaag tgccaatgcc tgtgccaatt ttggaacagc tagaacacga gggagaagca
    13261 atggtggacg attggctaca aggggtgaga gataaactcg ctcaagcaga tagtctggag
    13321 gatttccaaa gtcagctaga tagccttatc cctgaattaa gctttgccga atatggcgag
    13381 ctgttggcgt taggctcaac ggtggcagag cttgcaggca gacaatcggt aaacgatgaa
    13441 attaaggcaa aacgcaatgc gtaaatttac ctttaaacag caagcccaat attttgagaa
    13501 aaaactcaat ctccgcacga atagctacct tgatattctg ggcgaagagc acgactattt
    13561 tttcgtggtg gctggggcga atcgtaatga agtgttgagt gagtttcgca aggcggtgga
    13621 tgaggctatt cacaacggcg aaaccttaga gaactttcgc aagcggtttg atgaggttgt
    13681 ggcaaaaaca ggctgggagt acaacggcgg acgaaattgg cgaacacgga ttatttacga
    13741 taccaatgtt tacggggcgt ataaccgtgg acgtttgcaa caacatttag agcttgcgga
    13801 ggatatgcct tattgggaat atcaacacaa cgacaacgcc caccctcgcc cacagcacgt
    13861 ggcgtgggac ggcttggtgc tgcgttatga cgatccgttt tggaaatatc actatccaat
    13921 aaaagcctac ggttgccact gcaccgtgca agcgttagat gattttgacc tcaagcacga
    13981 tggtaaaacc gtcagcccac cacctgaaat tgagtttgaa caaaaaacgg taggcgtgcg
    14041 gacaggcaat tcacgagtcg taactgtgcc gaaaggggtt gatgtgggtt ttacaccgca
    14101 taattttgat aatctcaaag ccgggagagc agcaaatgta gataagttgc taatgcaaaa
    14161 aatggttacc gccgatccta tatttgcctc caaagcagtc agtgatttat tggcaaaaga
    14221 gccggttgca aagttacata accaagcctt taaaaattgg gtaaatgatg ttgccaatgc
    14281 taaaggaagt gcattatccc aagtagagaa tatgcagttg ttaggggtac tacctgttgc
    14341 ggtgattgaa cggttacagc agatcaattt agctccgcaa tctgcaatta ttgcaataac
    14401 aaaaggcgat atggtacacg ctctacgaga gctaaaacaa aataccggta ttgccgtacc
    14461 gttggaattt tgggaaaagt tgcctgcaaa gttacaatac ccaaatgcca tcttgttgga
    14521 aaaacaacaa gcagaaacta cattgctctt tatctatgac gtagctcaaa ccaaaattgc
    14581 cgtaaaagtc aattatgatg caactttaca agatagacac ggagcaaaag gacggcagaa
    14641 agtcttactg aatcgagcgg ttacaggtag tttattccaa gatacaactg gattgaaaag
    14701 ttcaaagtat gaagtgctat tgggagaaat gtagcggcga aggactcgaa ccttataatg
    14761 taggttaaac ctacaacctt taccaattag gaaactaccg ctacattgtg taaattcact
    14821 atacccctaa attatttttt aatcaatagg agaaacaaaa tggcagaaaa acaactttcc
    14881 tttaaagtag ccgaaatagt gccaatgtca gctattaaca ctatgcggca cttaattagt
    14941 ttggcattac aagcgaatta tgagagagaa aaatctcgtg cttgataatt tcaatggctt
    15001 gtagttcggg aactatatta tctgaaacaa gccattgttt tgttgatgtc agacatttag
    15061 cgatgaaatc cataattaaa ccattagcag tagctcgttg ttccggagta agttgtaacc
    15121 acgacgcctc tgtttgttgg tctaatgtat aaagaaacat aacggcttct ttttctgata
    15181 atgggtcaag tggtaatttt tcagcttttg tgactaacca ttgacgggaa agcaataaat
    15241 cataaaccag ttctattgct tgttctgcat ttaccatcat attctaattc cttaatatat
    15301 cagggcaaca ttacccaatc tatattttac tgagatttgc ttaatgatca aaatcaccct
    15361 caacaacacc caagcggtca aatcgttaca acaaattgca aatcagctgg aacaacctcg
    15421 ccgactgtat ggcattttag gggaaaccct aaagaaaatt cacactgcac gctttaaagc
    15481 ggaacaagac cccgatggca acaattggaa accgttagcc agtagcacgc ttgctttaaa
    15541 acgtaaacga ggtaagtcca ctaaaatctt acggcaagac ggctaccttg ccgataaaac
    15601 ggcttacaat gttacaagtg ataatgttga gtttggctcg caggaagtgt atgcacggtt
    15661 gcatcaattc ggcggtaaag ccggacgagg caaaaaagtg actgtaccgg ctcgcccgtg
    15721 gttaggcgta ggcgataaag atgagcagtt acttttacgc aaagctgagt ggcatttagg
    15781 gcaaattatc ggtcgtatgg gaaaataacc gcttaaaatc aaatttaacg cataaaaacg
    15841 cctctgtgcg tttttatttt ttattcgcct gattattcga ctcaaaaaat ttaaacgctg
    15901 ttaaacgcat ttaaacggta tttaaacggt attgccgatt gtgataaatc ctctttatta
    15961 aaacaccctc gaaaaatctt taaaccagtt taaaagctaa tttctctcca aatccttatt
    16021 attgccccat cacggaggca atatgaccca aattgaaatt tttaaagccg gtaagcgtta
    16081 tgacgccaac ggcacgttaa ttgacattac ccctgaaatg ttgcaacaga ccgttgctgc
    16141 ctataacccc gaatttcacg aagctccgct ggtgatcgga cacccgaaat ccaacaaccc
    16201 tgcgtggggg tgggtaaaag ccctttccct tgagggcgat gtactaaaag cagaagtaga
    16261 tcagctagac gctgagtttt cagaaatggt ggcaagcggc aaattcaaaa aagtctcggc
    16321 tgctttttac ttacctgata gcccgaataa cccacataaa ggcgtgttat cgctacgcca
    16381 cgtggggttt ttaggggcaa tgccaccggc ggttaaaggc ttaaagcagg tggaatttgc
    16441 agaagatgat gattttgtcg tcttttctga atggggggtt gcaagtctat ttagtcgttt
    16501 tcgtgattgg ttggtgagtg agttcgggct tgaaaaagcc gataaagctc ttcccccaca
    16561 cgaaattgat tggctgaaag aagaggcaat gcgaagccaa attagcaaac aggtacacgc
    16621 cgaacaggca acacctgaac cgatttttaa tgaacccgca caaccagaag gagaacctga
    16681 aatgagtgca gaagagaagg aagagcttga acgcttaaaa gcggaaaacg agcagttgaa
    16741 agccgaaaaa gcccaagccg aagcagagaa aatggaagca gagctggaag ctgaaaaagc
    16801 tggtaatgca gagttttgtg aaggtttagt caagcaaggc aaacttgccc cggtggcaaa
    16861 agcggcgttt gtgcaggctt taaataacct ttcagtatta aaagccggtc gtgagccgga
    16921 atttaatgag ggcgaagatg tggtttcaca gtttaagtct gcaatgtcgc aatcaccaca
    16981 gattatccaa tttggagaat atgccacagc agataaagcc aacccacaag aagcggaagc
    17041 agtggaatat gctgaaggca cagatccagt ttcgattgaa gccgaccaaa aagtgcgagc
    17101 ttatatgaaa gcccacaatg taggctacgc tgcggcattt aatgcgattt atcgctaatg
    17161 tttaacccac aactgaaaag gaatactaat gacaactcat aacttacaaa aactgcgtgt
    17221 acaagacccc gttttaaccg agctggcaca aggctatcac aataacgagc tggttgccga
    17281 gaccttaatg ccgactgtcg aaatcgaaaa ggaagcaggc aaaatcccaa ctttcgggcg
    17341 tttagctttc cgattgcctt ctaccgtgcg taacttgcgt ggttcatcta accgtttaga
    17401 tccagaagat attggggcga ttgatgtggc gttagaagaa cacgatgtgg aatatgccat
    17461 tgattatcgt gaagagaacg aagccatttt ttctttacgt caatttgcct taaataccac
    17521 ccaagatgtg attgcgttag gtcgtgaaaa agcggttgca accctcgcct tagatgaaag
    17581 ccgttatgaa acagacaata aagtcacgct gtccggcacc agtcaattca gccataaaga
    17641 tgctgatgtg tttaaggtat ttgataccgc tattcgtgcc gtgaagcggg ctatcggtcg
    17701 taaaccgaat gtgtgtgtga tttccggtga tgtgtgggca gcgttaaaag aacatccggc
    17761 agtggttgaa aagctcaaat acagtcaagt agcgattgtt acccctgagg tgtttgccaa
    17821 actgatcggc attgagaccg taaaaatcgg tgaagcggtg tatgaagaaa gcggtcagct
    17881 caaagatatt tggagcaaag atattgtggt ggcgtatgtt gctcctcgtt cgaccggagg
    17941 caaaggcacg gtttacgagc cgtcttatgg ttacacggtt cgccgtcaaa aaggcttatt
    18001 tgttgatact tataaagaga gtggcggcaa aattgaagtg gtacgcacga ccgatattca
    18061 caaacctcat ttagtgggtg cggcagcagg ctatttaatt aaagctgccg tataagccac
    18121 ataccatagg gtgcgtttac taacgcacca ttatctcaaa cacattacat agaggaaaaa
    18181 acgatggcta aatttattgt tttacatacc ccaattttac acgatggcaa acgctatgag
    18241 gtgggggcag aaattgaact caccgctgaa caagctgaga acaatgcgat caacttaaaa
    18301 gcggtagaag ctgttccaaa accacctaaa aatgcctcaa aacctgaaga tgagccaaaa
    18361 cccgaaggtg aacctaagcc tgaagatgca gtgacggaag atgatgtgaa gctggctgaa
    18421 gcaaaaattg cagaagcaga gcaaccaaaa gggaataaaa aataatgtat gtgcagattg
    18481 atgagctact cacggcgttt agtcgcaaga ttgtggtgca gctcagtaat gatgaaccga
    18541 cagcgaccga gcctgattta aagatgcttg aaacggcagt taaagtggca aatgagcgaa
    18601 ttgatgcagc gttacgctct cgctatacct tgccgctggc tgatgtgcct acgcttatta
    18661 atcagcacgc attaaccctt gcccgttatt ggctttatgc ccgccgtcct gaaaccaaaa
    18721 tgccggacac cgtgaaggaa acctaccaac aagcggtgaa agagttggaa cagattgcaa
    18781 caggcaaact gcatttaggc attgctgaaa gcagtcaaat tttagaagac gatgttttag
    18841 ccgataacag tgaatatgaa gttcgggcga acgctcgcat tgataccagt cgttattaaa
    18901 gattatgtca gccacacaac cgattttaga agatatttgc caacacttgc ggcaagcatt
    18961 gcccgagtgg gaggtggaac tcttcccgaa tgacccaagc acctatcatc tctcgcacat
    19021 taacggtgcg gtgttgatta gctatttggc aagcaaattt gagaaacctc gcactacaca
    19081 agcggtgctg caggttcgcc acgttcagat tgctttaacg gtgctgaccc gtgatttgca
    19141 taatgatgtc ggggcgttgg atttgctgga taaattgcgg ttattggttg tggggtttaa
    19201 gcctcaaaac tgcggtgagt gttggttgat tgatgaattt tttaatggct caagcgaaga
    19261 aaccgggctt tggcaatatc agttgatttt gcaaaccgaa actcagcagg tgcaacacca
    19321 agcggtcgaa aatctgccaa aatttgtaac cgctcatctt cgccgtcaag accagcctgg
    19381 ttcgcccgga cttaaaactt aaatcgtagg gtgcgtttgc taacgcacca tcaacatcac
    19441 ctgattttac ggtgcgttgg caaacgcacc ctacaaggag aatattatga cgtttcacca
    19501 cggttctgaa accgaacgag taaacggtgg ctctgtgccg gtatcggtgg ttgatagtgc
    19561 cattatcggc attgtcggta ctgccccaat cggcgcagtt aatgaattga ccgtctgttt
    19621 aaccaaaaaa gattttgcca aattcggcac gattttaaac caaggcttca ccttacctga
    19681 tgcctttgat attttagctc gttacgcagc gggtaaagtg tatgtggtga atgtgcttga
    19741 cccttcccgc caccgtacta ccgtgaccga tgaagtcctc acactggatc gcaatacgct
    19801 gaccgctcaa acagcgaaaa ccggcattat tgcggtgacg agagtgaaag acggtgcaaa
    19861 cgtgctgaat gctgatcggt attcggtcga tctgcaaacc ggcgtggtga cctttgtctc
    19921 tgcaccgtct gccccgaaaa ttagctatat ctatgctgac ccgagcaaag tgaccgaaga
    19981 ggacattaaa ggcggggtgg atagcttaac cggtaaacgc aaaggttttg aactattgcg
    20041 tgatggtttt aacctttacg gtgcggatgc caaaatctta atctgtccgg aatttgataa
    20101 aaccgcaagc tgtgccgctg cccttgccac ccttgccgac caactgcacg ctaaggcgta
    20161 tattcaactg ccgaaaggga cgagcttatc aaaagctatt caaggacgtg gcccggcagg
    20221 gacgattaac gcctcggcaa gcaatgagaa cgtacgccat ttcttcccgt atgcgttggg
    20281 gtcaagcaat actcttgaaa gccttgcgac ccacgccgcc ggtttgcgta tgttgattga
    20341 tgtggagaag ggctactggt tcagcacttc caataaagag ctgaaagggg tgatcgggtt
    20401 ggaaattccg ctgacggctc gggtggacga taagcaaagc gaaactaatc tgctcaatgc
    20461 ggtagggatt accaccattt tcaatagttt tggcacaggc ttccgcttat ggggcaaccg
    20521 ttcgtctaac ttcccgactg tgacccatat cagcaacttt gaagtcgcct ctcgcacagg
    20581 cgatattatt gatgaaagca ttcgccaagc cgaattgcag tttattgatt taccgattga
    20641 tgatgcgttg ctggatagct tccttgaaac catcgacact ttcctgcgta cgcagaaatc
    20701 gttggtaggt tattcggtga gcttagacta tgaatatgac ttggttgatg cattcagccg
    20761 tgggcaagtc ccgattgtgt atgaatacac tcctaaaatt ccgggtgaac gtatcagcaa
    20821 taaatctgtg atgacccgta aatacttggc aaacttggtg tcgcaacgat aaggggaaat
    20881 aaatgagtat tgcaattaac caaattgtaa acggaaatgt ttacattaac ggcaacagcc
    20941 aaatggggcg agtgaatgag gtcaaaatcc ccgatattga gtttgaattt atcgaacaca
    21001 aaggccttgg aatgcacggt gtgattaaat tacctgccgg cacgaatgcg attgaagcag
    21061 aaatcacttg ggacagtttt tatccggaag tgcgtgcggt aatgcttaat ccgtataaat
    21121 acactcagtt gcaaatccgc tctaacctgc aagtgtttaa ctcgcagggc ttggcagccg
    21181 aagagccgat ggtcaccatt atgaatgtgt ctgccggtaa aatcggcggc acagggcata
    21241 aaaacaaaga aaatgccgaa tttgccgaca cgttaaatgt acattcaatt aaacagaccg
    21301 ttgccggtcg tgagctgtta tttattgatg tgctggcgaa tatctaccgt gtgaacgggg
    21361 tggatgtgtt gcaaaaattc cgcaccaata tcggttagta aaatctttaa agccgtttaa
    21421 aatcaattta aacaccgttt aagtaaactc ctttgtgaag ttaaacaaca accactcaca
    21481 aaggagtttt tttatggcta acgcagctca acaagtatta accaatcttc gtgtacaaac
    21541 cacttataaa ttgcaatacc ctatcgcttt accagatggt agagttattg aaaccttaga
    21601 tgtacgtcgt ccaaaaggta aagattttcg tttgcttgat gaaaaagggt ttgaccctga
    21661 aaaagatggc gtaaaaattc tacgcttcta tattcaacag ctcaccacac ttgtgccgga
    21721 agatattgat gaactcgatg ctgccgatat taagggctta aataacctat tggaagatat
    21781 gcttattgag ggaaagtccg acaaataagt gaactagata ccgtttatgc tgatctcgct
    21841 tggtggttta agttttcacc aagcgagctt ttagaattgg atttagtgga tattccgaaa
    21901 tgggtagaac agatgaacag gcaaataaaa gccggttatg ggcagatttt acggtagagc
    21961 caaataaagg gttcggtggc taaagtaagt aaaatggcga cgccccaagc tagatacaca
    22021 ccaacccacg ccaagattgt caaaatcaat ccataaatga gtacaaaact aacgccctcg
    22081 cttaggcttt gtatagattg aatcgcatct aaccagtaga agatactcca accgactaat
    22141 gctaccgcta acaaccattt agcggtgcat tctgttcttg ttacacaagc ctcgaaacca
    22201 gcccactcag taattcgatt atttaattta gtcagcatac accacctcct taaactttcc
    22261 ctattttacg ctaaggattt aaccaatggc aaataattta gctatcggaa tggtaattgg
    22321 tgcaagccta tcatcaggtt ttcacggtgc tttttcagga gcaaagaaaa agctagaaca
    22381 attagaacag gctgtcgcta aaaatcagca aagccattct aaattaggtt ctgagcttac
    22441 tgcattgcgt agtaaacaag ctactctcta tgcagaaatg agccgagcca gtagtaaagg
    22501 tggtgctggg cttgctctta tgcaacagga atataaaaaa attggcaaag aaattgccaa
    22561 tattagccga gagcaacgca aatggagtac agaattagaa aaatctattg ctaagcaaac
    22621 taaattacgc aatgcaatgg aacgtcatac acaagctaaa gaaaaccgag acgagcttaa
    22681 agggaaaata attggaacgg tagcttctgc ggcaatgggt gtcggcgtga tgaaaaccta
    22741 tatggagcaa gaagaagctg cgaataatct taaaatttca atgctgaaag cagatggttc
    22801 tttcgggaaa tttgaagaga ttggcaagat tgctgacaca ttagggacag atttaccggg
    22861 aacaaaaaaa gatttctaca agctcgcaat ggcattaaag aaacaaggtg tttctgatga
    22921 tgtgctgacc ggaggggcat taaaaacttc tgccgaactg aatgtcttgc ttgatatgga
    22981 tcaggaaagt ggtggagagt ttttagcgaa gtttatggaa tctcaccggc tcaatgaaaa
    23041 tgagttacca caagcagccg attatctgca acgagcaatg tttgccggcg gtttaagtaa
    23101 agagcagatg tatgaatcga tgaaatacta tgctccaaaa ctgaactcaa tgaaacttac
    23161 aggggctgag aataccgaaa aagtgctggc gattgaagca atggcaggtc agcaaggctt
    23221 agagggttca acctttggta cgggcttaaa tatgatgtta agccgtatga ataaaggacc
    23281 ggaaatgctc aaggcagcag ccaaaggaat gaaagccgaa gctcgagaga tgatggaggc
    23341 tgtcggagta gaatttaatt tctgggataa aaacggctca ttcaaaggca ttgatggaat
    23401 gctggctgaa atgacgaaat ttgaaaaaat ccgcaaaaaa ttcggtgaca aaggtgtagg
    23461 tttagttgca gaagagctgt ttggcattga aggtgggcgt cttgctgata ttttggctat
    23521 gaaaggtcaa aaaggcttag atgaaatgct gagtaaaatg cgtgaacaag ccagccttca
    23581 agatcgcatt aaccttaaaa caaatacatt aggtgctgcc ctagaatctt taggaggagc
    23641 gtgggaaacc tttgtggggg atattggctc tgtctttgcc gaagatataa aagggttttc
    23701 aaaaggcttg caatctgcgg tggaatggct tgtgccattt gtatcaaaac ataaagaggc
    23761 gattaaattt gtaggtggtt tggttgctgg acttgttatt ttacgaggcg ttttacaagc
    23821 tggttctttt gttattcaaa cggtaactat ggcaatgaac gccctcaaaa ttgcagcaat
    23881 gaccaatcct attgtcttag tcattggagc aatcgcagcg ggtgcttact tgatttatag
    23941 ccattgggat agcattgccc cttggtttgc aaatctttgg caaaatgtga ccgcttactt
    24001 caatcaattt tggacttggg taaaaggtgt ttggtcgggc gtgacggact gggtgtcttc
    24061 tgtgtggaat ggtgtagcca cttttttcgg gcagttatgg actacgatta ctagcttatt
    24121 tagtgtagct tggacaaata tccaaacaat atggggagga gcaacagctt ggttctctgg
    24181 tttatgggat gggattaagt ctgcggcttt tggtatgttc gacagtatta gccaaaaagt
    24241 cagctctgtt gtagcaagca ttaagagctt tttaggcttt ggcgatgatg tggataaaat
    24301 gggggcaaaa attggcaatg tagctaccca agtcatcagc aaagaacact caggacaact
    24361 cagcaaaacc gcagatatgg cagccaatac agggttctct agcggtggtt tcaccgggca
    24421 aggcggtaaa tatacccctg ccggtattgt gcataagggc gaatatgtga tgacgaaaga
    24481 agcgacctct cgtttgggtg ttggaatgct ggatagctta aactatggcg gtgctatggg
    24541 tttcactcaa cctgttttgc aaccgatttt aggtaagcaa aaaggctttt ttggctcact
    24601 ttgggacgat gtgaaattcg gggcaaactt tgtcggcaat ctgcttggct taaatcaagg
    24661 cagcctgaaa acgcctgatt ttaacccaaa tgcgaccaat gcaagcggtc aaaattcgtc
    24721 gatttttagc aattatgaac cactcaaccg aaatgcggta acacagcagg aaagctcgca
    24781 agcaccgcag atagtcgtga actttaaccc gacaatcaat gtaaacggta atgctacgca
    24841 agaggctcaa tcgcaaatta tgcagcagtt gcaaatgagt gcttatgagt ttgagaaatt
    24901 gctcaatcgt gtgctagacc aacgaagccg tagagcctat taggagtgat ttatgtattt
    24961 tatgttaggc aatattgcct ttgagccggt gaatttaact gaatttagcg agcaacatac
    25021 cgccgaattt gccgaacacg ctgtgctaaa aggcaaacct cgtttacaag cgatgggcga
    25081 aaagctaaat gaacttaatt tttctcttcg gttgcaccat accataggcg gtgtagagag
    25141 ccgttatcaa gccttgcttg aagccaaagc gaagcaagcg gcattggcgt taatttgggg
    25201 cagtcgttat aagggagatt atgtaattgt cgatatttca tcgaccacat tgttcaccga
    25261 tggcagaggc aatgccctcg ctcgtgaaat gcaaatcagc ctgaaagagt ttgtgggcga
    25321 taatgacggt ggtgtgttgg gtgaggcgtt aaattttggt ggtggctcac tgcttggctc
    25381 tattttgcca agcggtgcgg taactaccct atctcaaatc aaaacagcag tcagccgagg
    25441 tgtggagctt tataacagcg gcaaacgctt agttgacgaa gtgcaaaata ccgtggcgat
    25501 tattcggcag ttgaaaaatg acccggcaac tgcattggca tatttacccg ctgcattagc
    25561 gaatttagac ggggcattgg ggcattttgg taatttgacc ggctcatcgg cgaccttggg
    25621 cggtttgcag gagaaactac cggcagcagt ggtctttagc gaggaaatcg gcgagattta
    25681 tcagagtttg caaacaatgc gaagcagttt gggtaatgcc tcggcaaata gctgggataa
    25741 ttggtttaca ccggcagaga gtgcattgac agaggtcaca gacagctttg accatctagc
    25801 aaaaccggtg gcaaaaatga ccgcttggat tgtgctgcgt accgatgagg aggcagaaaa
    25861 tgacacagtt gcttaaacat atcgtcaaac agggtgagcg ttgggataac ttgagctatc
    25921 aatactacgg caatgcgttt gaatatggtc gaattattga tgccaatccg catatcggtt
    25981 tttgcgaggt gttgccgata ggggtaacaa tttatatccc tgtacttaac gttaagccaa
    26041 cgaataatga aaatatgcca ccgtggctaa gggggcgtga tgcgtaatgt accgaagccc
    26101 gatttttcac tgttttatga aaaaaccaat atcactgccg agattgagcc acatttggtg
    26161 caactgacct atatcgacca tttggaaggt caatcggacg aactcactgt ggaatttgaa
    26221 gacattcaag gcaaatggat acgccaatgg ttcccgactc agggggataa gctcaaagcg
    26281 gcgattggct atcagggcga atttctgacg gacatcggtg agtttgaaat tgatgaagtg
    26341 gaatatagtt ataagccttc cactattaac ttaaaagctc taagcaccgg tatcagcaaa
    26401 gccaaccgta ctttaaaacc gaaagcctat gagaatacga ctcttgctca ggtggtggca
    26461 aaggtagcag ataacctgaa attaaaggta gtcggtaaga ttaaggctat cccgattaaa
    26521 cggatcaccc aatatcaaga gcgggacgtg gagtttttgg cacgccttgc ccgagagtat
    26581 catcacagct ttaaaatcgt gggcaatcag ctggtcttta ccgataaaag cgaactgggg
    26641 caaagtgagc cggtgttaat gttggaagaa cgggatacta tttccctacg tttgcgagat
    26701 cggattaaag acactgcaaa ggcagtggaa atcagcggct atgatacaag cggtaaaaaa
    26761 gtggtgaaaa aacgcaaaaa ggcaaaagcc ttacgcccga atataaaaca agctaaatca
    26821 gccagtgaag atacgctgaa aatcatcaca cgaggcgaaa gtcaagaaca gattgatgca
    26881 cggggtgagg ctgcgttggc tacgcaaaat gaagatcagg cggctggtga tattgagctt
    26941 atcggcaatc ctaaattggt tgccggagca acgattttat tgcgtaactt tggcgtgttt
    27001 agtggcaagt atctgattaa atcatcacgc catacgatta gccgtagcgg tggttatact
    27061 actcatattg aggtcagaat gttggagttt attgccgatg atttaatcac attaggtatg
    27121 gaggctggca atgcaaacgc ataattttgg ggcgacttat caagaaggga ttgtatccgc
    27181 tgttgatccg aaaacgcaca aagtgcggtg taaaatccct gcgctggaag atttagaaac
    27241 tgcttggctg tcgtttttga ccccgaacgc cggtggcaat cagttttact gtttgcccga
    27301 tgtgggcgag ctggtggcaa tgctacttga tgcacaaggc gaaggtggct gtgtgtttgg
    27361 ggcaatttat aacgagcaag acccgacacc ggttgccgat agcgatatgt gggttaagaa
    27421 attcagcaat ggcacggaga tttcgcataa tcgcaaaacc ggcgatgtgg tagtgaagac
    27481 taacgggcat ttaaccgcaa cggctcaagg tggggctacg attaatgcaa acaccgtagt
    27541 caatggcaca ttgcacgcta ccggtaaaat cacctctgac gaagaagtct ctgctcctgt
    27601 tgtgaaacaa ggcacggtag agcttggcac acataaacac ggcggtagcc ctgaacctaa
    27661 taagtaattc tttaaaccag tttaaaatcc cttttaaaga tagccctgta tcatcagggc
    27721 tatgaacaga caaacttcca ttcaattaac ccactggcaa cttgcaccct caaccgatac
    27781 agttgaggtg gtgcaaggta ttgatgatat tcatctttgt attgtcaata tcctttcaac
    27841 ccaaaaaggc acggatattt tacgccctga atttggctct gaccactttc gctacattga
    27901 ctaccctgaa gatgtggcta tcccgaattt tgtacgggaa attacaaccg ccttgcaaaa
    27961 atgggaaaaa cgcattgagg ttgaagaagt attggtggac ggttcagctc cgcattttat
    28021 ttttactgtg atgtggcact taaccgatga tgtttatcgt gaaatttacc gaacaacggt
    28081 ataaggatag gcaatgacag aagcgattaa aatcattgat gacgatgtaa aaaccgtact
    28141 tgccgaagcg attgccgatt atgaaaaacg caccggtaaa atcttacaac ctgcacatat
    28201 tgagcgttcc attattcaaa cctacgctta ccgtgagcag ttattacgca aaggcattaa
    28261 tcacgccttt ttacaaacct ttccgcagtt tgcgacgggg attgcgttgg atttgtgcgg
    28321 ggaaactttt ggttgttatc ggcttagaga taaacctgcc cgtactttac tacgcttttc
    28381 agtaagtggt gaacatacag ctatagttat ccctaaagga acgcaggtgg caattaatga
    28441 cgagctatac ttttcaacgc tcaatgacga tgttattact ccattaatta cctatgtgga
    28501 aattgatgca gagtgtaatc aggttggtgt tatcggtaat ggttgggaat caggaagagt
    28561 cagtaaacta aaaacagcac tggcaactaa ttataaagta acagttgaaa acattgatat
    28621 tacgagcggt gggttgatgc aggaagaaga tgaaccttac cgtaagcgaa ttttagccgc
    28681 accggaagcc tttagtaact gtggctctat cgctgcatat gattaccacg tccgctctgt
    28741 atcccaagat attgcagatg tgaatatctc tacgcctagg ggtggcttgg taagaattgc
    28801 ggtattgacc caaaaagggt taccggatac ccgattactt gatgatatta aaaaacacgt
    28861 tagtgccgaa cggctacgcc cactttgcga tatggtcgag gttattaagc ccacagaacg
    28921 ccgttatcaa attacggcac gtttaatatt gttagatggc taccgtgagg atttggtaaa
    28981 agcaaaagcc cgagaggcat tacaactcta tttgtcagac aagactaaaa aactcggttt
    29041 agacattgtg ccgtcggcca tcatttcagc tttaagagtt gagggtgttt acgatgtgaa
    29101 tttaattcag ccagtcaaaa ctattatcaa cgaaacagaa tgggcgaact gcacagcaat
    29161 cagcgtagaa gtcgaagagg agcgtagaga tggctagctt gcactatgcg gacattattg
    29221 tgcgagaccc taaatataaa gcattagcgg atttaagcaa gcggttaaat ttgctcgata
    29281 cttcgcaaat tatgactacg ctggtggatt tattgggcga cgaatgtatc ccattgctgg
    29341 cagaaaaatg gtcggtaacc ggctatgacg gcttattggt tgcagatagc gaaaactcaa
    29401 agcgagcctt aattaaaaga gcaatcgaac tacatcaact aaaaggcacg ccttggtcaa
    29461 ttcgtgaagt attacgcaga ctaggtttcg gagaggttga gattgacgag ggactgaaaa
    29521 atcggctgta tgaaagcact tatgtgagcg gaatccccga aaacgaacgc tgggcgcact
    29581 atgcgattag gttgagtaac ccgattacca atgagcaagc tcgcaatatc cgtaaggtct
    29641 tacgcaattt tgctccggct cgttgctctc ttgcagtttt ggattataaa gcagatccaa
    29701 ttcgatataa caataaagca acctacaacg gcacatataa ccacggttca agttaaggat
    29761 aaattatggc aggtgtacaa gaaaccgcac agtgggaaaa ccacgtttac agaattgaag
    29821 aaaatgaccc agtccacgga ggagaaaacg gtgtaaccaa taagccaatt aagcacctag
    29881 caaaccgcac gctctatctg cgtagattgc tcaccgaggc aggacaacgc attaacccga
    29941 aaaaaatcac agctaccagc aaaaatagta atgatttaac tgggcatact cacgagattg
    30001 accacgcaag cctaacgcaa aaaggcattg tgcagttaaa tgcgagtatc caatcaacta
    30061 gcacaactga gtctgcaacc ccttcagcag ttaaagcagc ctatgataaa gcagcaacag
    30121 cagaacaaaa agcgacattg gcaaatgaga aagtcgaggc gattaaagta ggcggacgaa
    30181 acctcctcat tcaatccaac actccacaca acgggaatgc gtactcagtc agatacgcat
    30241 tggctgaggc tccgaaagta ggcgaagaga ttgtagtcac tctatggggt gaactcggct
    30301 ctcaacgtac tggaattggc gtttacaact ctcaaggtgc tacggagttg gcaaaactgg
    30361 tcaaaattcg tgatggagtt tatcaaggta aaggcatttg gcgtaagccg atgagtgagg
    30421 gacgagagcg aacgcctaac gacacgcacc tgaatgtgta tttttacccg aaaaccgcaa
    30481 cagataataa ccgtattgag cgaatccagc ttgagcgagg ctcaatcggt acagattgga
    30541 cgccaaacga ggcagactta aaggcagaga ttagtgcaat ccgcactaaa ctaatccctg
    30601 tacggggtgg caatgttgct acaaccttaa atgcggctaa gcggtcggat tggtttagag
    30661 aaatgcaaat cccttatcaa agtggttggg ggtattacac ccaagcattt cataactcag
    30721 ggacgcaaca caactacagc aatttaccgc tgacaggtcg ttattatttt atcgccgaac
    30781 tctatcataa ctctggttat tctcacttgc gtatcaccta tccaagttta aaacgcacct
    30841 ttgagagtgc tatcaacctt aacaatgagg atttgattct agattggcgt gaggtggtgt
    30901 ttttaaaaga tggattgtat caaggcactt ttaaaacaac aggcacacta gagtctgctt
    30961 atcgtctaag agcggctcgt gatgatgaac gttatcagcc atacctgcaa atggtcgata
    31021 tgggctatga ccttgccaat cccccggtag gaaaaaacaa aattattggc agtgttgatt
    31081 attacgttaa aaacggcaca agcgagtctt ccaaagcgac gatgatggca gcggcaatgc
    31141 ctgacaagaa cgtattttgg gaagtagcat tgtggaatgc agcacagcaa cggaatgtat
    31201 tgtttaaggg gtatagcaag actaacaatt tgagtattgg taaaaccacc gacaatgagc
    31261 gagaccgagt acaagtcaat ggcacaatcc aagccaccgc accggctgat aacgccaata
    31321 acgaccaagt gccgactacg gcttgggtgc gtaagatggc aaagatttta gctgatggca
    31381 aggtgagtaa agccggtgac acaatgactg ggcatttatt catcaagaat ggggaatact
    31441 ctgcggtaca tacctataac acaagtggtt ggttcgcaaa atgggaggcg gccccattat
    31501 ctgattcgca ctttgctgcc attgtatatg ccaacgacag agagacagtt atcaatcggg
    31561 tgttaattcc caagaagaat ggcacagtcg ctttaattaa tgatattgcc gataccgtta
    31621 gagccgctgt gagtcgtagt gataaatccc gtagtagaac ttttcctctg caaacgggga
    31681 aaaaatatac aaccacaggg agcgttacga tttatccaga tggccgaatt gtgcagattt
    31741 tccacttaaa aaatattaaa gcggcgtggt ttgattatga ggcaagtgcg gtaggagata
    31801 ggcatagagt tgtcaatatc cctctttgga ctgcgatgcc aaataaaatt tttgatgtcg
    31861 atgttaaaac tgttcgcccc tcaaataatg cctcaactta ctacatagaa gcggctgaat
    31921 ggctgagtgc gtggcagatt tacggtaatg acacgaacaa atcaagtgtc aatattaatc
    31981 tatctcgatt cagaggtgga aaggatgaag atatggactt gtatgtaaca gttgagggat
    32041 attaaatggc atattttgtg aatgtgattg atgagcaagg caattatgag ctaattgatg
    32101 atgagtttat tgggctgtat ccggatttgg attttaacac attacccaaa ctcacggata
    32161 agcaatatca gacctacctt gccaaagcaa acggcaaaga gcgatttgta aatggcgaat
    32221 ttgtgtatga gcaaattaag gtggatatgc aagcggtcat ttccgctgaa aaatctgcaa
    32281 agttagcaga gattaaccaa aaagcacaag cctttatcaa tgatttagcc aaatacaacg
    32341 aaacgcctaa gtttgagcgt gatacttggc ttgagcaagc gaaagaggca aaagcgtggg
    32401 tggctgaccc aaccgtacaa acgccaaccc ttgagttaat tgcgcaaatg cgaggcatac
    32461 cgctcgacac gctacgccaa aaagcctacg aaaaagcgat ggcgtatcaa acggtggctg
    32521 ctattgtagc agggcaacgg caaggatacg aagaccgcct agaacaagcg gaaaccttag
    32581 agcaaataca ggcgattgag ccgatgtatc aattaccgca aggagcaaac aatgagcaaa
    32641 ctgactaaat taaaatcgtg gagctaccac gtcttaattg caatagatca actctttaac
    32701 gctctcaccg gtggagcagc ggacgaaaca ttttctagcc gttgctaccg tggtgcagtg
    32761 cttgcggaaa atccgaaaaa acgttggcgt ttttggcact cttttttgaa ttgcttattt
    32821 ttagacccaa agcactgcta cgccgcttat aaagcggagg tacaccgcaa gcagtatccg
    32881 aaggcattta gacttggggg gatttaatga aaaagcaaaa cttaaaatta gtgcggggcg
    32941 atgatgtgag ttttagattc agcattaaag acagcaccgg acaacctctt gcgttaaagg
    33001 atttgtggtt tgatttgcac ttagtcagct atcaaggtga ggtgctgatt gctctctcta
    33061 ctgatgatgg cagtattgag acagcagagg ctggtcagat ggtgttacat tttagtcacc
    33121 agcaaactgc tcgagctgaa tggacaagtg ccaattatga cttgcaactc acgcacgact
    33181 atacaagagt ctaggaggtg gagatgacct ctatcattga actagacctg actgatgacc
    33241 tcatcattga ggtgcagtta gatagcacaa tcattaccgg cgatagcttt ttagccaacc
    33301 tgccggattt actccaaatt tacaaccaag caaagtcaga tagcagtaag gagcttaaca
    33361 atgactaaac acaaaaacca cgaaaaccac ccgattgcta taacattcta ccaacttggc
    33421 aaagatgtcg gcgacattaa ccgccggcta gcggttattg agcaacgtga gcaatcagca
    33481 cagccaagcc aaccacaagc tgaggcggtt acaatgccac agcaagatgc tgttgccatt
    33541 aataacatca atgccgtttt ggaggcggtc gaaaaataca aaacttttga aaaatacaac
    33601 actcagtggc aagagcgttt tgaaaaattc ctgtctcgta acccgaatga ttacgagtta
    33661 agtgaagagc aacgccaaaa actttaccac acgatgtgcc agcatttgtg gcaggtgaac
    33721 tttactgaaa tcaatagtaa acagtatgaa ttaccgatcc cgcaacaatt ccagggtaag
    33781 tttggctata ttgtcaaaac ctcgggcggt agcacagaaa ttagttttga gttgctatct
    33841 gaaactcaca gcacttatct ttatccggat agctatattc ccgagggcgg tggcgatgta
    33901 atgctcaagc cggcttatat ttatttagtg attccggact tagtggcaat gcgtgagccg
    33961 gaggtggtgg gggtttcacc gctgaaactg aacattctgc agaaacacct gctgacacct
    34021 cagaaactac aggagcagaa gcccttgaac acgaaggcaa actgattgat ggcgtatggc
    34081 attttgagcg agagccggta aatccaccga gagatcagaa ttattatgtg gcaggtaacc
    34141 tgttctacaa cggcataccg gattgataaa ttgatgtttc agtaaaccta attagggggg
    34201 aatccccctt ttttattatt ataaggaaag aaaatgaata aatctttagt agcgttagct
    34261 gttgcagcga tggcatcgaa agcacaaact aaacagcaag caagcaagca agcaagcaag
    34321 caagcaagca agcaagcaag caagcaagca agcaagcaag caagcaagca agcaagcatt
    34381 gtgagataga gaaagtattt aaacaagctc ctttaccctt ttcagggcaa aaacggatgt
    34441 ttttatccca tttcaaacag gtgttaaatg caaatattga agcagacggg aaagattgga
    34501 ctattataga tgtttttggt gggagtgggt tgcttgcaca taccgcaaag cgtgagaaac
    34561 cgttagcaag agtgatttat aatgattttg ataattacgc cgaacggcta aaccatatca
    34621 aagagacaaa tcaacttcgc caagaaatct accaaattgt tgatgaaatt ataccaaaaa
    34681 ataagagaat tagcaatgaa attaaagcta aaatcatcaa taaaatcaat gattttgagg
    34741 ggtttaaaga cctcaaatgc ttaagttctt ggttattgtt tagcggtgag caagttgcaa
    34801 ctttagatga gttatttaag cacgattttt ggcactgtgt gcggcaaagt gactatcctg
    34861 aagcaacggg ttatcttgat gatattgagg tggttagtga gtcctttcat caattattgc
    34921 cgagatttca cgacaaagag aaagtattat tgattcttga cccaccttat ctttgcacaa
    34981 gacaggaaag ctataagcag gaaaattact ttgatttaat tgatttctta cggttgatag
    35041 accttactaa accaccttat atcttcttta gctcaaccaa aagcgagttt attcgcttta
    35101 ttcactatat ggttcaaaac agaaaagaaa actggcaagc gtttgaggga gcggaaagaa
    35161 tagtggttaa tgcctcggca agttataacg gcaaatatga ggataatatg gtgtataagt
    35221 tctaaaaatt taaacgccct ttgatagtga tttaaagggc gttaaaaaac cattaaaatt
    35281 aagaaagtaa agctcctgtt ttctttcgta gttttcgtgg ttgcgtttcg cagttttgtt
    35341 ggctcgctac aattactgtt cattgtaatg tttaatcgac cattggtttt gctaggatca
    35401 gtttcaccaa aataaccgtt aaaaccttgg acggtgcctt ctgctgcttt gattttttca
    35461 gcaagtattt gttgctttgc agcactttca tctgttacct tgagtacttc aaagtattcg
    35521 ttttcacgaa tgagaccagt agcaaagtct aaatcgatga aaactttacg cgcattaaaa
    35581 atagctgtga tctctgcaac gcttaaaggt tttttcaaac ggataaaatt agttggcaag
    35641 tgtggaaaac gttgatatgt gaaaatatct ttgtccaaat gacgagaaac ctgatctgga
    35701 ctagtaattg cttgaacttt cacttggtca attgttggac taactatgcc ggttagtgta
    35761 atgtttgctg tttgggctgt attatgattg acaaccatcg ctccttcatc gctattctga
    35821 atacggcgga acgtgagatc attgccgttg acatctaagc gcccaccacg ataaccaaaa
    35881 tagatattgt taggatccat ttgatctgat gaattgagga ttacggtagg tctgccactc
    35941 acaataccta gctctgaaaa tgcagatttt ttgttatttt catccgcttg ttgatttaat
    36001 ataacagtgc cgtcaccaac gctaacggag cctttgtttt ctcctttgcc gttgatagtt
    36061 agtgtccctt gtccgatttt tgataatctg tcaccagcag ggttactgat tttccagatc
    36121 acatttttat ctttatcaat atcaacaccg gctcctaacc aagtaatgcc tgctttcata
    36181 ccttccacag tggtattacc atgaaaatgg attgctcctg caccttggtt gatattctct
    36241 gtgagactta gcgtattgtt ttcacccaaa atatggaatg ttttaccgtg ttggagttga
    36301 ggattccaag ggttatcgcc tgtattacca ttatgacctt gaagtgttgg taatgaagta
    36361 tctgctaaat taactgtaag aggagcattc cctcctacga ttgagctggt attgccagaa
    36421 ggtgtccaag tgagtctagc accatttgca ttaatagcgc ctgcattatt ttctttttct
    36481 aaagcacgta cataatgtgg gtggtgatag ttccagtaag atttataaac atctccccca
    36541 agcgtattat tctctgagaa atagtcacta tatacaccta acacaaccca ttttttggta
    36601 cgaacatcat aaccaaaaag agcggagcca ctatcgccag gtaaaccgag agttgttaag
    36661 ggaccgtagc cgtggtcttt aaatacatcg tttatggtat tattttcagt ttttgctact
    36721 aaaatacggc tgttaaaatc gctgcctgga acgcttggat cgccattagt aacaggcaga
    36781 acgctacctc ctgtcaaaaa aggaccgtta ccgacttcaa tacgcccgtt gtttaagcga
    36841 tctctttcgt tgttaaccac tgcttgtcta ccagaaccgg cacgaataaa catggggaaa
    36901 ataaaagggt cgctaaatac actataaaaa tcttgtacat tttcggtagt gcgttcaatc
    36961 tcattagctg gagcgacttc agttactaat ttcgataacc taggtgcgtg gtagtcccag
    37021 cggggcgttg ggttacctga accatctaaa atcagttttt ctccttcgtc attacgttca
    37081 cgtttttcta tgcctttccc gagatctgtt ctttctttat ttggatcagg catatagtta
    37141 ttacggcgca ccacactata attgtaatga tggtcgtcgg ctttttcgct agatgaatca
    37201 ccaaattgaa tgtcccgata gccttggttg tggtttacac taataacgta ttgtggatta
    37261 actaatgttg caatccctgt ttgacgagta atggaagaga agtcaatcat tggaatagac
    37321 atagtctcac ctgttactgt ttcaaaaaca ggtagatcat tagagtcttc atcacctcca
    37381 ccatagagaa attcataaca accgggtaaa ctttcattat caaagcattc agataggctt
    37441 acattcggct taggtgaaat atttgattcc acttcaacct gcttagttgg tgtaacctgt
    37501 aaaaaagtac cgatgttttt gcccgtttta tcaataactg gaatattggt tgccccaaca
    37561 aaaaatttgc ctttattttc tgctaaatca cgaaaatatt gataatcgac atcaccacgt
    37621 acaatagatg ccagtaatgt tggtgaaaga gaaatagcaa ttgatgttgc tagaagagag
    37681 agcttgaaag tatgcttcat tattatttga aacctgtata aatatgtaag tagatcagat
    37741 ttgagcgcta ttaaaaagat tatttaaatc gattaaatat tcatttaaat accacacaat
    37801 tattcagcgc gattatcttg ttcggcataa atctgctcaa tacccaaata aggtaataat
    37861 taaaataata ggggatattt agtagtaaca tagagaagag aaaagagtct ttattatgtt
    37921 atttagagaa taattttgcg attattactt ttgcaaagtt tttcactttt tcgaccgctt
    37981 gttaaataaa aagggcgaaa aatgtttcgc ccctaccgat tactcttgtg gaattgtacg
    38041 gattgctaac tcttccaacg ctttcggatt cgcatagctt ggtgcttctg tcattaaaca
    38101 cgctgcagcg gtggttttcg ggaaagcgat gacatcacga atgttatcag ttcctgtaat
    38161 caacatcgtt aagcggtcta aaccgaaggc taagcctgcg tgtggcggag taccgaattt
    38221 taacgcatct aataagaaac cgaatttctc tttttgctct tcttcgttaa tgcctaaaat
    38281 gctgaacacg gtttgttgca tctgctggct gaaaatacgt accgagccac cgcccacttc
    38341 gtagccgtta attaccatat cgtaagcgtt tgccaccgca ttttccggat cttgcactaa
    38401 ttcttccggc gataattctt tcggtgaagt gaacgggtgg tgcattgccg ataagttgcc
    38461 ttcatcatca cgttcaaaca ttgggaaatc aatcacccat aacggtttcc acgctgtggt
    38521 atcggttaag cctaaatcgt tccccacttt taagcgtaac gcaccgatgg cgttagtcgc
    38581 aacgtgccag ttatccgcac cgaagaatac aatgtcgtct ttttgcaagt ttaagcgttt
    38641 aactaaggct tttagcactt cttcatttaa gaattttgca accgggcttt gaatgccttc
    38701 taaacctgtg ttcatatcat tcacttttaa ccaagccaag ccttttgccc cataaatgcc
    38761 gacaaattgg gtgtagtcat caatattttt acgggttaga gctgcaccgt ttggcacacg
    38821 aagtgccact acacgccctt tcggatcatt cgccggaccg ctaaatactt tgaaatcaac
    38881 cgattttaaa atatctgcca catcaaccat ttccagtggg ttacgcaaat ccggtttgtc
    38941 tgaaccgaaa cgggtcattg cttcattcca cgtcatcatt gggaatttac cgagatcaac
    39001 gcctaaggtc tctttccata agccgtggat catcgcttcc attaatgcac gcacttcttc
    39061 ggcagtcata aagctggttt ccacgtctat ttgggtaaat tccggctggc ggtcggcacg
    39121 caaatcttca tcacggaaac atttcacgat ttggtaataa cggtcgaagc ccgacatcat
    39181 tagcaactgt ttaaatagct gaggtgattg tggcagagca tagaatttgc ctttatgcac
    39241 acggcttggc acgaggtaat ctctcgcacc ttcaggagta gctttggtca gcatcggggt
    39301 ttcaatgtct aagaaaccgt tatcgtccat aaaacggcgg acaaaactgg tgattttagc
    39361 acgggttttg agcttttctg ccatttcagg gcggcgtaaa tccaaatagc ggtattttaa
    39421 acgctgttct tcggtattgt tttgattgaa gtctaacggc aatacttcag cgttgttata
    39481 caccactaaa ttttttacta acacttcaat ttcaccggtt gccatctctt tattgatttg
    39541 cgattcatca cgggcaatca cttcaccttg aatttgcacg cacgcctcag aacgtaaggc
    39601 cgatgcttgc ttgaaaagtg cttcatcttt ctcatcgaaa aacacctgca caatgccttc
    39661 acgatcacga atttgcataa aaataaaacg accaaggtta cgaacacgat gaacccaacc
    39721 gcttaaggta actgtttgtc caaggtgtga gcggtttaat gcaccgcagt agtgagaacg
    39781 catcataaaa ttatcctttt gaaaataaat atcccaagtt tcggggaaaa cttaaggatt
    39841 atagcggaaa attcagcgaa gatggataaa taaaagcaaa caagcggtga tttatccttc
    39901 cagcccaata aaaacggcta ataacaatgg agcggctaaa ttaacaataa aaccgaagct
    39961 gattgccagc ggcacaattt gaataccgcc cgatttttga ataataggga gcatacaatc
    40021 taatgaagtc gctccgccaa tgccgactgc ggtggacgga aattgacgca taaacagtgg
    40081 tactaaaaac aggcataaaa tttcacgcga gatgtcgtta aaaaaggcaa tactgccgta
    40141 aatcgggccc caagcatcgt ttaccaatac gcttgaaagg gaataccaac cgaatgcaga
    40201 ggcaaaggtt aagcctttag caagggataa atctaaggtg aatgccgaaa tcacgccacc
    40261 aatcagggaa cttgccacca ttacaatcga ggtataaatc ccccgcttgt taaagaacac
    40321 ttcacgcagg ggaataccgc tgtttcgcag ttgaatcccc accccgaaaa tcatcacttc
    40381 taacacatag gtgctggcgt gcagagggaa atccaccacg cctttggtga aatagccgat
    40441 gatcccgcct aataaggtaa tgccgattaa tttaaaggaa tcaatcaaca aatgcaggcg
    40501 ggagggaagt tgatcttgat tgactttgtc tcttttcatc ggttgtaatt tgtcgtaaat
    40561 caccaagccg ataatgtttg aaaggagtaa aatcaccact aaactaaacg ccgtaccgcc
    40621 aatctgtggc agttcggtga gaatgttatc aatttgtccg agagaaatcc ccatcactaa
    40681 taaaatcaag taaaggcaga ggctgaccac tctgtttact attgccatat ggcggtggtt
    40741 tttgagggtt attaagtaac cgagaaaaag tggaatcagc acaatggcta aaccgtagag
    40801 cattttttat cctttttatc gctattttta aacttgaaat tctaacaata agggcataaa
    40861 ataaaactgt ttttatatac agttatttgt gttgcaagcg gtcgtttttg gggaaaatat
    40921 tgcaaatgtc gattcaagct aaacataagc gaaaaattat ccatattgat atggattgtt
    40981 tttatgcagc ggtcgaaatg cgggaaaacc cggcgttggt cggtaagccg gtggcggtgg
    41041 gcggcaatgc taatcaacga ggtgtgctga caacctgtaa ttacgaggct cgaaaattcg
    41101 gcttacacag tgcaatgcca acggcaactg cgttgaagaa atgcccgaat ttaattttat
    41161 tgccggtgaa tatggcgttg tataaatcgg tttccgctca aattcacgaa atttttcatc
    41221 gctatacgga tgtgattgaa gccttgtcgc ttgatgaagc ctatttagat gtaaccgaat
    41281 gcgaacgcta ttttggctcc gccacttgga ttgctcaagc aatccgcaat gatattttca
    41341 atgaattgca tttaactgcc tcggcaggag ttgctccgct taaattttta gcaaaaatta
    41401 cctccgatca aaacaaacct aacggacaat gtgtgattac gcctgatgat gtgcaaaatt
    41461 ttgtgaaaaa tctaccgctt gcaaaaattc cgggtgtggg gaaagtaacc aatgaaaaat
    41521 taaaacagct tggctttgaa acctgtggtg atattcagca agcagaaaaa gcggttattt
    41581 accgagcgtt tggcaaattc gggcaacggc tttgggattt tagccacggt attgatgaac
    41641 gagcggtaga gccttatcgt gaaagaaaat cgctggcggt ggaaaatacg ctgttgcacg
    41701 atatttcaac ccttgagcaa gcggaaaaga ttgtggcaga tttattcgac aaactggttt
    41761 ttcggttgca acgaaactgg ggcgatacgc cattaactga gtttaaaaag ttaggcatta
    41821 aactcaagtt tgatgatttt agccaaacca cgcttgaacg aaccaccgat ggctttgcgt
    41881 atgagcgatt tggcgagttg ctacagcaaa tttttacccg aagaaaggaa cgaaaggtgc
    41941 gattaatcgg tctaagtgtt cactttcccg agaaaaaagt gaataaacag ttaaatttgt
    42001 gggaataatt gtaaataatg acttgaaatt aaggctaaag tcattatctt attcgtgcaa
    42061 tcattgcatc tatatttttg gagattgaaa acattatggc aaaacgtgtc attctatttt
    42121 tattaactaa cttagcgatt acctttgttt tagggatcgt attaaacctt atttttaaag
    42181 tgaccggcat tcaagggcaa agcactgccg gtattttggt gctttcgtta gtcttcggtt
    42241 tcagtgggtc tttaatttcg ctatttatgt cgaaatcaat ggcattgcgt tcggttgggg
    42301 cagaggtgat tacacagcct cgtaacgaag cggagcaatg gttattcaac actgtacaac
    42361 gtcaggctca gcaagcgaat atcccaatgc cggacattgc gatttaccat tcggctgatg
    42421 taaatgcatt cgctacagga gcaacgaaaa gtaattcttt agttgcagtc agcaccggct
    42481 tgctgaattc aatgactaaa gacgaagctg aagcggtagt agcacacgaa gtggcgcaca
    42541 ttgcgaatgg cgatatggtt acaatgactt tattacaagg cgtgttaaat actttcgtca
    42601 ttttcttagc tcgtattatt tcgacaatgg cggcaagttc acgtgacgaa aatggcaatt
    42661 caagcaccaa tacgctggtg ttctgggtag tagatattgt gttacagatg gtgtttggtg
    42721 tgttagcaac aatgattgca atgtggttct ctcgccaacg tgaatttcgt gcagatgcag
    42781 gctctgctca attagtcggt aaagagaaaa tgattgcggc attacaacgc ttgcaacgtg
    42841 ttcacgaacc gcaagaaatg gaaggctctc ttgctgcctt tatgattaac ggtagccgtg
    42901 gtaaagagtt gtttatgagc caccctccgt tagaaaaacg tattgaagcg ttaagaaact
    42961 tataaagcac aagcggttgt ttttgtaaaa ttttttgcaa aacagccgct tttgttttct
    43021 ataaaatatg cggtaacacc gaatagagag ttgccagcaa aaacagataa cgtaacaatt
    43081 tcccaatcac aataaagaga atgctttgcc aaaggctaaa ccgtagccag ccggcaatgc
    43141 cacagaaaat atcgcctaca atcggtaacc aactaaaaag caagactaac acgccatatt
    43201 tttcactttt ggctaatgcc cattgtgaat aacgattggt agtattctgt gggcgaggga
    43261 gtaatagccc tatcgcataa gtggttatgc tacctaaact attacctaag gttgcaacca
    43321 agagtaaatt gaacagtgaa aatgaggata aagagccata agtgatgaga tgttggcttg
    43381 ctaaggtagt gaagataatt tcagaatttc cgggtaagag ggtagcgctt agaaatccac
    43441 tcagaaacat agtaaagagt tgattttgtt cggaaaagaa taaactgaaa aaggaagtga
    43501 gatattctgt cataaaattg tagttggttt gttattaaaa tgtagttata aattttcttg
    43561 aatgttgtgt tttttatgga ttttgttcta tatcaaaaaa agacatcgaa atacctctga
    43621 ttgtgtaata tttttatttg aagattatct caagaggtct ataatttcta cataatatat
    43681 cggtttttca attctcattg ttaaggttgt ctgatgtttt ctcctgctga aatggcaaaa
    43741 atcgcagaag atggtgcggt ttataaagca acaaaaaatc aattatattc ctttctctct
    43801 gccattactg cgggcggttt tattgcaata gcatttgtat tttataccac aacccaagtg
    43861 ggtgcgagcc aaatgccttg gggtatggct aaactgattg gtggtttggt attttcactc
    43921 ggcgtgatta tgtgtgtggt gtttggggca gaacttttta cctcatcaac acttacgatt
    43981 gtagccagag ccagccaaag aattaactgg ttacagatgt ttaaaaactg ggtagtggtg
    44041 tatttcggta actttgttgg ggcgatttcc attgtattgt tgatttggtt tagtggtcag
    44101 attatggcag ccaaagggca atggggtttg gttattttaa ataccgcaca gcacaaaatt
    44161 caccaccaat ggtttgaggc tttctgttta ggcattttct gtaacattat ggtgtgcatt
    44221 gcggtgtgga tgtcttatgc aggtaaaagc ctaaccgata aagcctttat tatgatgtta
    44281 ccgattgcaa tgtttgtggc ttccggcttt gaacactgtg tggcaaatat gtttatgatt
    44341 ccgatgggga ttgcgatttc gcactttgcc agccctgaat tttggacagc aattaatgtt
    44401 gacccaacgc aatttgccga tttagatgta tctcattttg tgtttaagaa cttaattccg
    44461 gcaacgctgg gtaatattgt cggtggcgtg tttttcattg gtttaatgca gtggttctta
    44521 tacattagaa agcattaaga tttcagattc aagcggtcaa attttgcaaa ttttttgcaa
    44581 aaaatcaccg ctttcccgtt ttaacttact aacacagagg acttaaaatg actcaactaa
    44641 cagacgctca acaaaaagcg tgggaaggtt ttgccgcagg cgagtggcaa actgaagtaa
    44701 atgtacgtga ttttatccaa aaaaactaca caccttatga gggtgatgag tctttcctag
    44761 ctgaagtaac acctgcaacc agcaaattgt gggcagatgt gatggaaatg atcaaagtag
    44821 aaaacaaaac acacgaaccg tatgatattg actgcgacac gccatcaacc attacctcac
    44881 acgcaccggg ttatattgat aaatcgttag aaaaaatcgt tggtctgcaa acagatgctc
    44941 cattaaaacg tgcgattatg ccgtttggtg gtatcaatat ggtgaaaggt tcgtgcaaag
    45001 tttatcgccg tgagcttaaa cctgaagtag aacaaatctt taccgaatac cgtaaaaccc
    45061 ataaccaagg ggtattcgat gtttacactc cggatatttt acgttgccgt aaatcaggtg
    45121 taattaccgg tttgccggat gcttatggtc gtggtcgtat tatcggtgac taccgccgta
    45181 tggcacttta tggtgcagac ttcttaatga aagacaaaca acgccagttt gcctcattac
    45241 aagctcgttt agaatccggc gaagatattc aagccacgat tcaactgcgt gaagaaattg
    45301 ccgagcaaca ccgtgcttta ggcaaaatga aagagatggc tgcaagctac ggttttgata
    45361 tttcaggtcc tgcaaccaat gcacaagaag cggtgcaatg gacatatttc gcttaccttg
    45421 cagcggttaa atcgcaaaac ggtgcggcga tgtctttcgg tcgtgtgtct tcattcttag
    45481 atatttatat cgaacgtgac ttaaaagccg gcaaaattac cgagcaagaa gcccaagagt
    45541 taatcgacca tttagtaatg aaattgcgta tggtgcgttt cttgcgtact ccggaatacg
    45601 atcaattatt ctcaggcgac ccaatgtggg caaccgaaac cttagccggt atgggtttag
    45661 acggtcgtac cttagtaacc aaaaacagct tccgtatttt acacaccctt tacacaatgg
    45721 ggccgtcacc ggagccaaac ttaactattc tttggtctga acaattaccg gaagcattta
    45781 aacgctactg tgcgaaagtg tctattgata cttcatcagt tcaatatgaa aacgatgact
    45841 taatgcgtcc ggatttccaa aacgatgact atgcgattgc gtgctgcgta tcgccaatga
    45901 tcgtgggtaa aatgatgcag ttcttcggcg ctcgtgcaaa cttagcgaaa accttgttat
    45961 acgcaatcaa tggcggtgtt gatgagaaat caggcgacca agtagggcct aaaactgaag
    46021 caattacaag tgaatactta gattacgatg atgtaatgac ccgcttagac agctttatgg
    46081 attggcttgc aacccaatat gtgacagcac tgaacattat ccactttatg cacgataaat
    46141 atgcatacga agcggcatta atggctcttc acgaccgtga tgtgttccgc acaatggcgt
    46201 gtggtatcgc agggctttca gtagcggcag actcactttc agccattaaa tatgcgaaag
    46261 taaaaccaat ccgtaccgat attgaaatca aaaacaaagc tggcgaagtg gttggtgtag
    46321 cgaaaaacgt agcaaccgac tttgaaattg agggtgaata tccgcaattc ggtaacaacg
    46381 ataaccgtgt ggacgacatt gcagttgatt tagttgaacg ttttatgaag aaaattcaaa
    46441 aactcaaaac ataccgcaat gcaacgccga ctcagtctgt gcttactatc acttctaacg
    46501 tggtatatgg taagaaaacc ggtaatacac cggacggtcg tcgctcaggt gctccattcg
    46561 gaccgggtgc gaacccaatg cacggtcgtg accagaaagg tgcggtagct tcattaactt
    46621 ctgtggcgaa attaccgttt gcctatgcga aagatggtat ttcttatact ttctctatcg
    46681 taccaaatgc gttaggtaaa gattacgaag cccaaaaacg taaccttgca ggcttaatgg
    46741 acggctactt ccaccacgaa gcaactgtag aaggcggtca gcacttaaat gtgaacgtgt
    46801 taaaccgtga tacattatta gatgcggtag aacaccctga aaaatatccg caattaacga
    46861 ttcgtgtttc aggctatgcg gtacgtttca actctttaac caaagagcaa caaatggacg
    46921 taattacccg caccttcact gaaagtatgt aattacaatt tgcaaaactt ttagccacaa
    46981 aacgcattgc gttttgaacg ttggctttgc cgacggctcc gtaggagcga acaaaattgg
    47041 aaacaatttt gtgagtaata atcaaccgct tgtagcattt atgccgcaag cggttttttt
    47101 gtgatctcgc tcgaaaaatt ggctattcat ttacacagct ttcgtaatat tgtttataat
    47161 tacagtgttc tatatgggag aaagagatgt ctaagcaaga tttaattcgt tcctctgtgg
    47221 cggaatacct cacttttatt acagctaccg gcgaaagcca agttgatgcc gtttacgccg
    47281 atgaaaatgt atggcttagc caaaaaatga tggcggtgtt gtatgatgtt gatgtacgaa
    47341 ccattagcta tcatctcaaa aaaatcttta gtgacaatga gttagctgaa aattcagtta
    47401 tccaattttt ttggataact gcccaagacg gcaaaaacta ccacaccaag cattataatc
    47461 tgtcggcaat tattgcggtg ggttataaag tcaattccga gcgagcggtg cagtttcgca
    47521 aatgggcaac cgaaatcgtg catagctttg cgattaaagg ctttgcgatg gacgatgaac
    47581 ggctgaaaaa tgacggcacg attttgggca aaaaatactt tgaagaacag cttgctcgta
    47641 ttcgggaaat tcggttatcc gaacgcaagt tctaccaaaa aatcaccgac atttacgcta
    47701 ccgccgtgga ctacgaccgc accgcaaccg ccaccaaacg cttttttgcc accgtgcaga
    47761 acaagctcca ttgggcaatt cacgggcata ccgccgccga gctgattatg gcacgagcca
    47821 acgctgaaaa gccgaatatg gggctaacga attggaaaga cgctccgcaa ggcaaaattt
    47881 acccctttga tgtggtggtt gccaaaaatt atttatcgga taatgaatta gcacaactac
    47941 aacggctggt ctctgcctat ttggatatgg cggaagatat ggcagaacgc caaattccga
    48001 tgacaatggc agactgggaa acccgcctta accgctttct tgccgccacc gaccgagaaa
    48061 tcttacaaga tgccggcaaa gttaccgctg aaattgctaa atctttcgcc ctcagcgaat
    48121 ttgaaaaata ccgagtcaag caggatctca cctacgaaag cgatttcgac ttactggtaa
    48181 aagaggtcgc cgccaaatac cacgccggct aggtttgcaa agttttcaga aaaaccgact
    48241 gcttgtaagc ggtcaaaata gctttaaaaa atgcaaaaat ttaaacatat ttggttgata
    48301 tgttgatgga gtcaatagat taataaaagt ttattcctga aataggcaaa aaatagtatg
    48361 actttctcct ttcttaaaat ataccggtgt gatttatttc tgcgaacaac ataaaaattt
    48421 gctacaattt ctcaaaattt tttgagggtt gaggtgacaa atgtctgttg ttggacgtat
    48481 ccattctttt gaatcctgcg gtacggtaga tggaccgggg attcgtttta ttctgttctt
    48541 gcaaggctgt ttgatgcggt gtaaatattg ccataatcgt gatacttggg atcttgatgg
    48601 tggtaaggaa attacggttg aagagctgat gaaagaagtc acgacttata agcattttat
    48661 gaaagcaacc ggcggtggtg taacagcttc gggtggggaa gcggtgttgc aaatggagtt
    48721 tgtgcgggat tggtttcgtg cctgtaaggc tgaaggcatt aatacctgct tagataccaa
    48781 tggttttgtt cgccattata gcccggtggt ggatgaaatg cttgaagtga ccgatttggt
    48841 cttgctggat ttaaaacagc tcaatgatga agttcaccaa gatttagtcg gggtgtcgaa
    48901 taagcgtacc cttgatttcg cccgttatct gcacaaatta aataaaccga cttgggttcg
    48961 ctatgtggtc gtgccgggtt atactgatga cgatgattct gcccatcgtt tagggcagtt
    49021 tattcaagga atggataaca ttgagaaagt ggaacttctg ccttatcatc gtttaggggc
    49081 tcacaaatgg gaaaccttag gctataaata tgagctggaa ggggtaatgt caccgcctaa
    49141 agaggattta gagcgtatcc aaaaaatcat tgaaagttac gggcatacag tcaaattcta
    49201 aagacaagcg gtcatatttt gtgatttttt tgcaaaaaat tattgaaata tgaccgcttg
    49261 ttttcttttc tctctcactt tgtgtattat cttgatacga attttcattt tgaccataaa
    49321 aggaaaaaat aatgtctaac cctcttttaa attacacagg cttgcctgcg ttctcacaaa
    49381 tcaaacctga acatatcaaa ccggcggtag aagcggtgat caaagaatgc cgtgaaactg
    49441 ttgaaaaagt cgcacaaatt gaaaacccga cgtgggaaaa tttctatatg ccacaagcaa
    49501 tggcagagga taaattctcc cgtgcgtggt caccggtagg gcatttgaat gcggtgaaaa
    49561 attccccaga gttgcgtgag gcttaccaag cgtgcttgcc gttattatcg gaatacagca
    49621 cttgggcggg gcaacatcaa gggttatatc aaggctatgt gaagttaaaa aacagccctg
    49681 agtttgaaac ttattcggtt gcacagaaaa aggcgattga aaacagctta caagattttg
    49741 aattatcagg catttcactg ccggcagaga aacaaaaacg ctacggggaa atttctgcac
    49801 gcttgtcgga actcaactcg caatttagca acaacgtact tgatgcaaca atgggttggg
    49861 atattgtaat taccgatgaa gcacagctta aaggcttgcc ggaatcggca ttagaagcgg
    49921 caaaattatc cgcagaaagc aaaggtaaga aaggctatcg cttcactctt gaaatcccaa
    49981 gctatttgcc ggtgatgacg tattgtgaaa acaaagcact gcgtgaggaa atgtaccgtg
    50041 cttatgtgac tcgtgcttct gatcaaggcc cgaatgcagg caaatgggat aacagtgcgg
    50101 tgattgatga gatcttaaaa ctgcgtcacg aaaaagccca acttctcggc tttaagactt
    50161 attctgatta ttcattagcc accaaaatgg cagaaaatcc acaacaggta ttagatttct
    50221 tgaacgattt agccgctcgc tcgaaagctc aaggcaaaaa tgaattatgc gatttgaaaa
    50281 aatttgctaa agcccatttc ggcattgaac atttggattt atgggatatt ccgttctaca
    50341 gcgaaaaaca aaaacaggca ttgtattcgg tcaatgatga agaacttcgc ccgtatttcc
    50401 cggaaaatcg cgtattatca ggcttatttg aagtaattaa acgcattttc ggtatgcgtg
    50461 tggaagaaca aaaagatgtg gatgtatggc acaaagatgt acgttttttc aatatttttg
    50521 ataaaaatga ccgcttgcgt ggctcgttct acttagattt atacgctcgt gaaaacaaac
    50581 gtggtggggc gtggatggat gattgcatca accaaaaacg cttggctgac ggcacattac
    50641 aaaaaccggt ggcatattta acctgtaact tcaataaacc gattggcgat aaaccggcat
    50701 tgtttaccca cgatgaagtg acaactttgt tccacgagtt tggacacggc attcaccata
    50761 tgctaactga aattgacgtg ggcgatgtcg ccggcattaa cggtgtgccg tgggacgcag
    50821 tggagctgcc aagccaattc ttagagaact ggtgctggga agaagaggca ttagccttta
    50881 tttcagggca ttatgaaacc ggcgagccgt taccaaaagc gaaattagag caattattgg
    50941 cggcgaaaaa cttccaagcg gcaatgtttg tgcttcgcca attagaattt ggcttgtttg
    51001 atttccgcct acacaccgaa tatgacccga gcaaacaagg acaagtgtta gccttactta
    51061 aagaggtgaa agaccaagtc gctgttgcca aaggcgtaga gtgggcgaga acgccacaca
    51121 gtttctcgca tatttttgca ggcggctatg cggcgggcta ctacagttat ttatgggcgg
    51181 aagtgctttc agcagatgcc tattcacgct ttgaggaaga ggggattttc aaccctgaaa
    51241 cggggcagtc tttcttagat aatatcttaa cccgaggcgg ttcagaagag ccaatggtgc
    51301 tgttcgaacg cttccgtggg cgtaagccaa cccttgatgc cttgctcaga cacaaaggca
    51361 ttgtaggtaa tgccgagcct gttgattgca ctcaataaag taaacacgtt ttacaagcgg
    51421 ttagatttgc aaattttttt gtaaatttga ccgcttgtct tttctttctt ttgcaactcg
    51481 ttataatttt cagcatttag cctgacagag agtgaaataa tgtctttaga tttagccgat
    51541 attcgaaccc aaataaccaa cttagaccgc aatttattaa agctactggc agaacgccac
    51601 cgcttagcct ttgatgtggt gcggagcaaa gaaatcacac aaaaaccctt gagagattta
    51661 gaacgggaaa agattttgct tcaagaactg gtaaattttg ccgaagcgga gaattaccag
    51721 cttgatccgc aatatgtgac ccaaattttc caacgtatta ttgaagattc agtgctgact
    51781 cagcaaaatt atctgcaaaa taaattgaat gcacaaaaag aagagcaggt ttcgattgcg
    51841 tttttgggaa tgcgaggctc ttattctaat atggcatctc gacagtttgc caaaaaatat
    51901 caaggcacat tggcggaatt aagctgccat tcttttaatg aagtatttga gaaagtcagc
    51961 cttggtgaag ccgattttgg cgtactgccg cttgaaaaca cgacttcagg ttcgatcaat
    52021 gaagtgtatg atttattgca gcataccgat ttaaccttag tgggtgaatt ggcgtaccca
    52081 atcaaacatt gtgtattggc aaacggcacg gttgatttgg cggaggtgga taccatttac
    52141 acccaccctc agcctgccca gcaatgtagc caatttttag ccgggctaga taaagtacat
    52201 atcaaatatt gcgaaagcag ctcgcacgca atgcaaatgg tggctcgctt gaataagccg
    52261 aatattgttg ccttgggcaa tgaagatggc ggaaaattgt atggcttgac gaatatcaaa
    52321 accgatattg ctaatcaagc tcacaatatc acccgtttta ttgttgttgc caaagaggct
    52381 gtgcaggttt cgccacaggt acaaaccaaa acgttactgt taatgaccac cacgcaacag
    52441 gcgggtgcat tggtcgatgc gttaatggta ttcaaaaatc atcatattcg tatgatgaaa
    52501 ctggaatccc gcccgattta cggcaaacct tgggaagaga tgttttatgt ggagctggag
    52561 gcaaatattc attccgagaa cacccaaaaa gcattggcgg aattggagca agttaccagc
    52621 tacctcaaag tgttgggttg ctacccaagc gaaattattg agccggtaaa actgtaatat
    52681 tgtctaatat gaccgaaatt aaagctcaga atattttctg agcttttact ttaggttaag
    52741 ccgattcttg ttttagaatt gcataaagtt ggtcttttaa atgcaatttt tcttttttta
    52801 gtgcctcaac ttcttcatgt gttgccagtt caatatttgc ctccatattc ttaatacgct
    52861 ggtctagctc attatgttta tcaaataagc gagcaaaatg tgaattgttt tgctttaatt
    52921 gggttatgag atcacgaaat tctggaaaca tatttaactc ctaatagtgg ttgcaaattt
    52981 tacttgatta aatactagca tttttttgtt gatttactgt taaatctttc tatttttttg
    53041 aacttgatca caaaatttat atcgaaaatt ataatgtgtg tgagccatat ttaaggctat
    53101 aataatgagt aggaatttta gatttaagga cacaaaaata atgagctata aagtggtctt
    53161 ttcgctgttg ttttctctat ttttatcaac agcaaatgca aattggacaa aaattaatga
    53221 tgtgaattat acgtgggggc catttaatat ttaccatatt acgcttttta ctgagagcgg
    53281 tacttatgta gaaggtacac gtcctttaat gcttactcta caatataaaa aaccgtggga
    53341 ggggcgtgat tttgcggttt ctttagcaag aacttggaat aatttaggca ttaagctacc
    53401 tgaaaaagag ttagatgagg ttattaccca cctgagaaaa actttcccag atattaagcc
    53461 tgaagataca ttgcactata ttgcattaga agatagaggt tattttattt taaatgataa
    53521 agtagtctct gatgtgttta ataaagcttt caatgatgct attgtagcaa tttggcttga
    53581 tccgaaaatg gatattagcc atcaattact tgatccatct tataaaccga gagcagaggc
    53641 agaaagtatt aagccacaag tagaggaaag agtagcggaa aacttacaag aacctatcgt
    53701 aaatactgaa gtttctaaag agctgaaagc ggattctcaa gcagtagagc aagcaccaaa
    53761 caaaatagat atacctgtag cagataaaac tcaagctagt gtggtaaatg aagcgactca
    53821 accggtagag aataaagata agaaagagcc agaaaagcta gaagaaaaac caaaggagat
    53881 gaagattgaa aatccggaag tgtttatttc accgatttat gatgatatct taatgctcac
    53941 caaatattgt gtttaagcaa agaacaagcg gtaatattct cgaaaaatat taccgcttgt
    54001 tcattttaat aatccattta agataaaatt ttcgctaact cagcacttac ttcttccact
    54061 ggttttgttc catctaaacg ctcataacga gtgttgccgg cttctgcttc tgcggtgtag
    54121 taggcgatta acggtttggt ttgtttgtgg taaatcgcta aacgctctaa taccgtttca
    54181 ggtttgtcat cttggcggat aattaaatcc tcaccagtca catcatcttt gccttccact
    54241 ttcggtggat tgtacaccac gtggtaagta cgccctgaag gttggtgaac acgacgacca
    54301 ctcatacgct caacaatgac ttcatcagct acatcaaact ctaacactaa atcaattttt
    54361 acacctgact cttttaacgc atcagcttgc ggaatggtgc gtgggaaacc gtctaataag
    54421 aagccattag cacaatccgg ttgagcaata cgatctttta ctaaggcgac cgttaattca
    54481 tccggcacta acttgccttc gtccatcaat gcttttgctt gtttaccaag ctcagtgctt
    54541 tctttaatcg ctgcacggaa catatcgccg gttgaaattt gcggaatacc gaatttgttc
    54601 ataataaact gagcttgcgt acctttgccc gcacccggcg cacctaataa aatcactttc
    54661 atttgaaaac ctcaattaaa ctaaaaataa taaaatcact taggcagtaa ccttaccgat
    54721 tactgcctaa aattgcaaat ttttttaatt ttttgaccgc ttgttatacg gaattagaat
    54781 tcatagcgta aatttaagcg tgtatagaat ggctcaccgt agctatattg gctaaagctg
    54841 agggcgttac gatatttttt atcgaataag ttatcaatgt taagctgtgc tgagaagttg
    54901 tcattaaatt gataacgagc catcaaattc actaaagtgt aagctttttg accatattcg
    54961 ccataagtag cgtgtttggt ataaattctg ctttgccagt ttacacctgc tcctaccgtt
    55021 aaaccttgca ctaaacggtt catatcgtaa gttgcaaaga gtttaaattg tttgcgtggt
    55081 tgagttgtgt taattgggtt acctgaagca tcatcgcctt tccactgagt atatcctgca
    55141 ctgagtttta atttttcagt tacatttcca gatgcttcta cttcaaagcc tcgaactttc
    55201 gcacctttag aggctgtgta gtaggctaat aatgtattag ggttaatacc ggcagattga
    55261 gctagattat cttgtcttgt ttcaaatacg ctaatttgag tttgcaagtt gtcattgaaa
    55321 taactccctt tccaacctgc ttcgtaggtt tcgcccgtaa caggagagag tagtttgtta
    55381 ttgatgtcca cttgactttg tggtttgaaa atatcggtat aacttacata aacggtattt
    55441 tgtggattaa tatcaaaggt taatcctgca taaggtgtcc aaacatcgtt agcgtggaag
    55501 ttttgtgttg aaccatagaa agtgccttct gtgcggtacg atgaaatacg agaacctaga
    55561 agcatagaaa gtctatctgt aagatgtaaa cgggtagaaa catacacccc gaactctttt
    55621 aagttttggt agtatttttc agacatactt ccccagtttg gtctagcata aatgccattc
    55681 caattattaa agtcgaaagc tccgtcaaag gtgctattat cggcagcgta ggaattacga
    55741 tgtgctcgat tgtattgaat accgattgcc gcatcgtgtt ctaatcccca agcagagaat
    55801 gaaccggtaa gatcaagctg cacattagat tgtgtattat catttttaaa tttacccggc
    55861 caaggcgacc aacctaatcc atcttggcga ttaagtgatg agccgctgaa atagaaaagt
    55921 tctgaattat gtttgcctac acggtaattg ccttttaatg caagttccca tttttcgcct
    55981 agtttttgtg taatatcggc aaaatagttt acggattcat tatcccagta agcccattcc
    56041 ggactggcat ttttgcttct gctccagtta gtttcaccac cgtcgctata gaatgcgggt
    56101 aaaccacccc aaagtgctgc atcacgtttt tctttttgat agcttacacc taacccaagt
    56161 ttggtagtgt cagttaagtc tgcttcaata ttgccataaa gcgtggtgta acgttctttt
    56221 tcatttttaa tgaacgtatt accgttttta tgctctgcaa taaagcggcc tcttactgat
    56281 cctgaattat tcaatgcttg gctatggtca atcattgtat tgaaatcagc ataacgcccg
    56341 attccagctt ctaaaatagt ataacgggaa atgctattgg ctcgtttacg aacaagatta
    56401 acacttgcag aaggatcgcc tgccccagta gttaagcctg tagcaccacg cacaacttct
    56461 actcggtcgt ataacacgct gttgcctgta ttttcgcccg ttgtccattg gttatttact
    56521 tactttgaga tccataccat ctaccttgac tttatcaatc ccaaaaccac gagcactgaa
    56581 agaatagcgt cctctgtcaa gtaaagaaac agaaacaccg tgagttgctt caagtgcttt
    56641 ggcaatcgta ttaagatttt gatctctgat ttgttgatgc gttacagccg ttacgctttg
    56701 tggcgtgtct ttcgcactca atgccattcc attagagcct ttggcttttt tctgtgcata
    56761 acgtccagtt tcttccgatg aggcatttgg cgtttcggca cttacttcta cggtatcaag
    56821 atgagtaact gtttcagcgt aagctgttga gataaaccct ataccagaac tgtataaggc
    56881 aagttttatc gctttagata gcgtgttcat aatttctcct aagtaatgaa taaaaaatta
    56941 tttatgttgt ttgagtaaca gtaagaaata gatacccccg agaatagagg caataatgcc
    57001 tgccccaatc tcataaggga aaattagata acgcccgagc caatcggcaa tgagcattag
    57061 cattgcccct aataatgccg atatagggat ctgtttctcc ggtgtaattg cacctaaatt
    57121 tttagctaaa tgaggggtca ttagcccaat gaagctcatt ggccctaccg caagtgtaga
    57181 ggcggcactc attagggcaa ttaaaagtaa tacaatcatt tgtacttttt taacctctaa
    57241 ccctaaatgg taagaaacgg tctcgccaag tgagatcaaa cgtaaaggtt tgataaacag
    57301 taaagtggca ctgataagta ggattgcaac agataataaa atccaaactg tattcggatt
    57361 agcgtaatag gttgagccag acagccaact aataactgcc gttaaacgag ggctgccgct
    57421 tagttgaata atagccatta agccactgac taaagctcca atagcaacac ctgtaatcat
    57481 taacgctgat ggttgtaatt tacgagagag ccacataata agagcgagaa cagtcaaact
    57541 ccctaataca ccaaataaca agaagctaat gctagataat gttgggaaaa gtaagaatga
    57601 cagtactgca gcaatagttg cccctgaact cacacctaat acttcagggc ttgccattgg
    57661 gtttctcgtt aagatttgta ataggctacc acttaccgca agcattgccc ctgttgctat
    57721 cgcacttaga ctacgaggca agcggtagga actcatcagg ttttcatcaa tgctaatagc
    57781 ccagccattc attgttggag caatgatttg taatagacaa aataggataa ctccagcgca
    57841 taacaacaat attggcagtt tccacgaatt gaggcgttta acggggaagt atgctgtatt
    57901 gcttgcttca aattgtgctt tacgttggcg taataccaag aaaattaata atggtgcgcc
    57961 tagtgttgcg gtaaatgcac caacaggtag tagagtgtcg taaattctgc taacaatgcc
    58021 gatgagatta ttggtaaaaa agagtaaaaa tccgcccgct agaaaagcaa tcaagaggcg
    58081 aagtaataaa tgtcgtattt tggcaaaatg agccaaactt gcactgcaaa tccaataaag
    58141 ccaatcacac ctattttgct tacaaccaat gctgtaatgg cggcacaaac aaaaataact
    58201 aagtagcgta gtaaattaac aggcgcgcct aagcggcgag cttgttcatc atctaaactt
    58261 aaaattgtga gtggacgaga gagtaagaca aagataaaaa atgcaactac taccgttatc
    58321 gctaaggtaa tagaagttgc ccaaccatct tgtaaaagtg agccacttcc ccaaaccatc
    58381 acgccaaata aaaaatcaaa gtagaaaagg gtcagtaaag aggcaatagc tccaaacaaa
    58441 atattaacaa tcaatccccc taaaataagg gtaaggggat tgagcttaga ggctttagca
    58501 ataaataaaa ccagtacgat agcagctaaa gagccaagta acgcaatcca gaaactagaa
    58561 aaaagctcgg cggctgggaa aaagataacc gcaatcatca atgcaagttg agccccgcta
    58621 ctgacggcaa gtgtgctatc tgacgctaaa ttatttctga caatatgttg taagccactg
    58681 ctggctatag ccaataaacc gcctgctaaa aatgacgttg tcatttcagg taaaagagct
    58741 gcttttaccg cagcttgatt aattggcaat aaatcaacat ttatgagtag taactgccat
    58801 tcccactccc agaccatatt taaacggata acagctgtta ctaaggataa aagaatacag
    58861 ccaatcaata agaatgatga tttcattact ctttttctcc ttgtgtcatt gcattgtgta
    58921 aaaactcagc aaagtgcgag atggaatcag ccccaccaaa gagccaaaca ggcggtaata
    58981 ctttcataca acggttttta ccaaatccta aacgttgcca aatgtagcta ttttctaaat
    59041 ctgcttgcgt cattttagaa aaaggtgaga tgacaattaa acaggtgcgt tcgggtaatt
    59101 tagctaaatc actcacagga ataagtttat ttccccagcg atctcccaca cctaaatcag
    59161 cttgttttaa gcccatcaaa tcaaaggcta cacggaacat tgaattagac gcatatatgc
    59221 gtaactctct cggagagcca aattgaacaa cagagtagta atcaatatct ggattactgt
    59281 taaggatttc tttcccccat tgagccaacg tttgttcagt tttcgttaaa tatgcttctg
    59341 ccgcattagg gtttttaatc tctgttccaa tcatacgagt ggctttttgg taagtatgcc
    59401 aatgttgctg aggttcagta ttgccaccat caaatagcac gtctatttgt ggaatttctt
    59461 tcgggtaaac agaagccaag tgagcgtaga aaaagtttga tagcaccaat tcaacaggaa
    59521 gctgtgctaa taattcgcga ttaggctgat aacgcgctcc aatatctaac acgctattag
    59581 gctgaatagg gcggtgcgac catagcggat aaattcgctt atcccccatc gcaatgggcg
    59641 gatttcccat ttcagtaagg gcagaggcaa tagaccaatc tggtgtaaaa atattaggtt
    59701 gagcaaatgc ggtagaaatt tgcaaaataa agagaaaaat gaaccgcttg tattgcctaa
    59761 acatcataat accgccactt tatgtaagcc tgcagggtgg ttaaacaagt gcagttttag
    59821 cccgaagatc tcaagtaatt tctgttcttg cataatttca tcaacagaac cttgaataca
    59881 gagttcgcct tgctttaacg caataatttc atcacaaaat tgggaggcaa gattaatatc
    59941 gtgaataatg ataatgacag ttagaccttg ttcattcact agcttgcgaa taagctgcat
    60001 tacttcaact tgataaacaa tatcaagggc agccaatggc tcatctagca gtaaataggg
    60061 tgtttgttgg gctaagcaca tagcaagcca aactcgttgt ttttctccgc ctgatagact
    60121 atttacaggc tgtttagcaa actgagtaac ggaggtgctt tccattgctt gctcaacaat
    60181 ttgaacatca aattctgttg gtttttgtag ccatttttga tatggaaatc gccctaaagc
    60241 aaccagttcc tgcactaaga aatccgccgc ttcaggtaaa cgttgtggta aataggcaat
    60301 atgttttgcc gcttctttgg tagaaagctg atgaagtggt aatccatcga ctaaaattga
    60361 accgctggta ggcgttatat ctccgcttag taaacgcatt aacgttgatt tacccgagcc
    60421 gttatgcgcc atataaacgc cccttgctta aattgaggga aatattgctt agcagtttac
    60481 ggttttgttc aacagagtag ctaatggaat ttatttgaat catagtgttg tgttttaaga
    60541 gcataaaaaa ggtgggatta ccccaccaaa tcaatcaaaa tgaaaatgag tagatgaaaa
    60601 tctattatga aaacggtgct aaatatattt ttattataaa tgaaagtcaa tatcatttag
    60661 ttttaggtga gggtaaattt taggataaat aaaaaataac cgactaaatt actaggtaat
    60721 tcaatcggtt ataagtggtc ggatatttaa taaaaaatct tatttttatg aatagctatt
    60781 cagcttgtcc ccaaggagca accttaaaca acattagcat tcccggaata ccaataaaga
    60841 aacagagcca gaagaattgg taatagccca tcatttccac taaatgccct gtgtatgccc
    60901 ctaacatttt gcttggtagg gcagcaaggc tggtgaaaat ggcgagctgc attgcagtgt
    60961 aagcgggatt agtttcacga gccataaagg caacgaaagc cgctgtgcct aaacccacgc
    61021 ccagatattc acctgccatc actaagccta atttccaaag ctcggcagct ccaatgcttt
    61081 cggtagggaa atgctcaaaa ctggcaaggt aagcgaagcc taaaatagta attaattgta
    61141 caaatccgaa cagccataag gctcggttaa cgcccaattt caacattgcc acgccaccaa
    61201 taataccgcc gccaatgctg caccaaagtg aagttatttt cacaatgccg gcaatgtgcg
    61261 atttagtaaa acccatatcc aaaataaatt tggtttgtag cgtagttgca agggaatcgc
    61321 ctaatttata taggaaaata aatagaatca gcccaatcgc tcctgccacg cctttacggg
    61381 tgaaaaactc tttgaacgga tcgacaaacg ccatataaaa cggcttagaa cggtcgattg
    61441 gcttatgatt cggctcggca gcgattatta gcgtaacgaa taagcaaggc actaaaaaag
    61501 cagcggtaat cagaaatacg gtatcccacg catagtgatc ggctaaaaat aatgaaagcc
    61561 cacccggaat cagccctgca atacgataag cattaacgtg gatagagtta cctaacccga
    61621 gttcgttatc cgataaaatt tcacgccgaa aggcatccac cacaatgtct tgcgtggcgg
    61681 aaagaaaagc taatagcaca gaaagagtaa caataattga aatatcttgc actgggttga
    61741 acaagccaaa gctggctaaa atcaccaata gcccgatttg tgaaatgaaa atccagcttt
    61801 tgcgtctgcc taaaaaaggt ggaaagtagc gatctaacaa tgcagcccac aggaatttcc
    61861 acgtgtaggg caaagaggtc agggtgaagg cggcaatagt tttaatatct aaattggcac
    61921 tggttagcca agccggcatt agctgaatta acacaaacaa cggtaaaccg gaacaaaagc
    61981 cggtgtaaac acaaagcaac atatttttag taaaaatctg ttgccagata gagcgtttgg
    62041 gttcgtgaca agcggtcata tttttcctac attttgcaaa ataaaaaggg gaagaactga
    62101 gccaatatag cataatttta aaggcgactc taaccctttc catttcgtca cagataaggt
    62161 ttgacagcct tgcgacatat ttctattatt ccttttaatc aaactaaaaa actggaagca
    62221 gagtatgaac acgcagcata gaaccgaatt acttcaaaat gcccttaccg aacgcattct
    62281 tatcttagac ggtgcgatgg gaacgatgat ccaaaaatat aaactaaccg aatctgattt
    62341 ccgaggtgaa cgttttaaaa acagtaccat cgatcttaaa ggcaataacg acctactcac
    62401 actcacccag ccactcctga tttctgctat tcacgagaaa tatttagccg ccggtgcgga
    62461 tattatcgaa actaatacct ttagtgcgac gaccattgct caagcagatt atgaacttga
    62521 aagtattgct tatgagctga atcttgtggg ggcaaaactt gcccgtcttg ccgccgataa
    62581 attctccatc cctgaaaaac ctcgttttgt tgccggtatt cttgggccga ctaaccgtac
    62641 ttgttcgatt tcccctgatg ttaatgaccc cggtttccgt aacattacct ttatgcaact
    62701 ggtggaagcc tatgccgagg caacccgtgg tttgattgaa ggtggggcgg atctgattat
    62761 gatcgaaacc attttcgata ccctgaatgc caaagcggcg gtgtttgcaa ttgaaacggt
    62821 gtttgatgaa ctgggcgtga aattgccgat aatgatctcc ggcaccatta ccgatgcctc
    62881 agggcgaacg ctgtcagggc agaccacgga ggcgttttat aactcgctcc gccacgccaa
    62941 accgctgacg ttcggcttga actgtgcgct cgggccgaag gaactccgcc cttatgtaga
    63001 gatgatgtcg aaaatcagtg agacttttgt ttcggttcac ccgaatgccg gcttgccaaa
    63061 cgcttttggc gggtacgatt taggggcgga agagatggcg acttacatca aagagtgggc
    63121 agaactcggc tggctgaata ttgtcggcgg ctgttgtggc accacgccgg agcatatcca
    63181 agcctttgcc gaagcaacca aaggcgttgc gcctcgtaaa ttacctgaaa ttccaaccgc
    63241 tatgcgtttg tcgggcttag aaccgctgac gattgacgat aattcgctgt ttgtgaatgt
    63301 gggcgaacgc aataacgtca ccggttcggc aaaatttaag aagctgatta aagaagaaaa
    63361 atttgcggaa gcgattgaaa ttgccatcag ccaagtggaa aacggggcgc aggtgattga
    63421 cgtgaatatg gacgaggcgt tgctcgattc caaaaaatgt atgacccgtt tcctcaacat
    63481 tcttgctacc gaacctgagg cggcaaaagt gccgattatg attgactcct cgaaatggga
    63541 ggtgatcgag gcgggcttgc aaacggtgca gggcaagccg atagtgaact ccatttcact
    63601 caaagagggc gaagagaaat ttattcacca agccaaactc tgccgccgct atggggctgc
    63661 ggtggtggtg atggcatttg acgaagtcgg gcaagcggat accgaagaac gcaaggtaga
    63721 aatttgtacc cgagcttatc ggattttggt tgatcagctc ggcttcccac cggaagacat
    63781 tattttcgac ccgaacattt ttgcgattgc caccggtatt gaagaacaca ataactacgg
    63841 cgtggatttt atccaagcct gtgagcggat taaacgagac ttgccacacg ccaaaatttc
    63901 cggcggggtg tcgaatgtct ctttctcttt ccgaggcaac aatgtggtgc gtgaggctat
    63961 tcacgccgtg ttcctctact atgcgatcaa agccggaatg gatatgggga tcgtgaacgc
    64021 agggcagttg gcgatttatg acgacctcga ccctgaactg cgagaggcga ttgaagatgc
    64081 ggtgctgaac caccgtcatg acactaccga ccgcctgttg gaaatttccg aaaaatatcg
    64141 gggcgtaaaa gtagaaagtg ccgatgaaag tgccgccgag tggcgaaatt tacctgtggc
    64201 agagcgttta aaacacgccc tcgtaaaagg cataacgacc tacattattg aagataccga
    64261 agaggctcgc cagcaatttg cctctccgct ggaagtgatt gaagggccgc tcatggcggg
    64321 tatggacgtg gtgggcgacc tgttcggaga cggcaaaatg ttcctgccgc aagtggtgaa
    64381 atcggctcgg gtaatgaaac agtccgttgc ctatttagag ccgtacatca acgccaccaa
    64441 gcagaaagga tcgagcaacg gcaaaatggt gatcgccacc gtgaaaggtg atgtacacga
    64501 catcggcaaa aacatcgtta gcgtggtgtt gcagtgcaat aactttgaag tgatagactt
    64561 aggcgtgatg gtgcctgccg atgtaattat cgaaactgct attcgggaga aagccgatct
    64621 cattgggtta agcggactaa ttaccccatc gctggacgaa atggagtatt ttttaggtga
    64681 aatgaaccgc ttgaagctcg atattccggt gctgattggc ggcgcaacga cctcaaaaga
    64741 gcatacggcg atcaaacttt atccgaaata taactacccc gtagtctata ccgccaacgc
    64801 ttcacgttgc gtaaccgtct gtgcgacctt gatgaaccct gaggcaaaag ccgaattttg
    64861 ggaaaaaacc aaagccgaat acgaagaaat tcagcgtaaa tttgccgttc gcaaaccact
    64921 tcgcaacggt ttatctattg aggaggctcg agccaatcgt tttgacggat ttagtggcga
    64981 atgggcagac tatgtgccgc caacgccaaa acagaccggc attatcgagt acaaaaatgt
    65041 accgattgcc accctacgca aatttatcga ctggtcgccg ttctttatgc tctggggctt
    65101 aatgggcggt tatcctgatg cctttgatta tccggaaggc ggcgaagagg cacgccgtgt
    65161 ctataacgat gcccaacggg tgctggacga atttgagcaa aacggcaagc tcaacccaag
    65221 tgggattatg ggcattttcc ctgccgtgcg tgagggcgat gatattgcaa ttttaaacga
    65281 agatcgcacc gcttgtatcg gcaaatccta ccacctccgc caacaatccg aacgaggcaa
    65341 aaacagcaaa agcccgtaca acctctgttt aagcgatttt atcgccgacc gagaaagcgg
    65401 acaacaagac tggttcggaa tgttcgccgt ttgtgccggc attgaagaac actatttagt
    65461 tgaaagctac aaagcggcag gcgatgacta caacgccatt ttgctccaag ccgttggcga
    65521 ccgcttggca gaagcaatgg cggaatacct acactttgag ctacgtacca aagtctgggg
    65581 ctacaccgtg gaagacgaag acaacggacg cttaatccgt gaagaataca tcggcatccg
    65641 ccctgcgccc ggctacccaa gctgcccgga acacaccgag aaacagataa tttgggactt
    65701 gttagaggtg gaacaacgca tcggcatgaa actcaccgaa agctatgcca tgtggccggc
    65761 agcaagtgtc tgcggctggt acttcaccca ccctaccagc aactacttca ctctcggcaa
    65821 gattgatgaa gatcaggtgt tggattacgc caaacgcaaa ggctgggacg aactcacggc
    65881 gaagaaatgg ttaagtgtgg cgatgaaaca agatgtcaag tcgcaggctg aaaacattta
    65941 atgtagtggc gggttttaac ccgcctgtta caagcggttg gttttgagat aaaatatgca
    66001 aaatttatct ctcttttatg caaagaagtt atcatcgaga acaaaacaat gattgaaaaa
    66061 caaaattatc acttagtaca acttttaaaa gacagtaatt atcaattaac tcaattttct
    66121 cctgcgtata taaaaaaatt agaggaatct attttcctca aatcagggaa aaatggagat
    66181 attcctcata ttcaatgtct tgttcgtaaa aaggatatta agctcacacc tgaagaagca
    66241 gtacgccaac tctatttaat gaatttgcat tatgaatatg attatccatt tgaacgaatg
    66301 gaattagaat attctgttgt attcgggcgt gagaagaaac gagcggatat tgtcatcttt
    66361 gatagagata atcctaacgc tgtctatatt atggtggagc tgaaaaagcc gaaattaaaa
    66421 gatggtaaag aacaattaaa atcttattgt aatgcgactg gagcacctat tggtgtatgg
    66481 acaaatggcg aaagtatttc ttactataat cgccgtgatc ctaattattt taaagatatt
    66541 cccgatattc cgaatgctca acaaaaactt tctgatttat tacaagaacg ttggactatt
    66601 caagatctga tagataatga caaaattgcc aaacaacgta aatcattgaa agatcttgtt
    66661 attgaaatgg aagatgaggt actggcgaat gctggagttg atgtttttga agagttattt
    66721 caacttattt ttactaaact ctatgatgaa atggaaagta cacgcaataa aagtcgttat
    66781 ttagagtttc gtaactatgg tgataccgaa agtgaattaa aggcaaaaat tcaatctcta
    66841 tttgatcgtg caaaaaataa atgggaaggc gtatttgctg aaagtgccaa aatcaacctt
    66901 tccccttcgc atttggcgat ttgtgtatct tcattggaag aagtaaagct gtttaattct
    66961 aaccttgatg tagtggatga agcatttgag tacttaatta ataaatccag taaaggagag
    67021 aaaggacaat actttacgcc tcgttacgtc attgatatgt gcgtaaaaat gctcgatcca
    67081 aaacctgaag aaacagtcat tgataccgca gcaggaagct gtggttttcc agttcattct
    67141 atttttcacg tttgggaaaa acaacttaaa gcgagaggat tagaacgctc acacttattt
    67201 actgctgaag aaaaattgcc tgaacaaaca gattatgtga aagaaaaagt ctttgcgatt
    67261 gatttcgatg aaaaggcagt acgtgttgct cgtaccctaa acttaatcgc aggagatggg
    67321 caaaccaacg tactacattt aaatacctta gattatgaac gttgggaaga ttttactaag
    67381 gaagaagaat ggaatgatgt atatggagaa ggctggaaaa aattaagaaa attacgtaaa
    67441 actaaaaatg aaaatcgaga tttccaattt gatgtgctaa tggcaaatcc gccttttgcc
    67501 ggtgatatta aagaaactcg tatattagct cgctatgaat taggcaaaaa tagcaaagga
    67561 aaacagcaat ccaaagtcgg acgagatatt ttatttattg aacgcaattt agatttctta
    67621 aaagacggtg gacgaatggc gattgtgcta ccacaagggc gttttaacaa ttccagcgat
    67681 aaatatattc gtgattttat tgcagagcgt tgccgcattt tagctgttgt gggcttacac
    67741 ggaaatgtgt ttaaaccaca taccggcaca aaaacttccg tactatttgt gcaaaaatgg
    67801 cacgatgaac tttgcccgaa agtagaggat tacccgattt tctttgccac aatgcagaaa
    67861 tccagcaaag ataattcagg cgataaaatc tatgttaaaa acgctgatgg cacactcaaa
    67921 ttagacaacc atcaacacct aattgtggag cacgatctat ttaatcacga taatagtacc
    67981 caagacggca ttgcagaagc ctttattgaa tttgctaaaa aagaaaagct ctcttttgtg
    68041 ggaaaggatt aagcccattt gaccctgcta aatatcaggc attgttagat gggctagagg
    68101 tgagcgaggt ttatttgagt aaggttcgtt ctgcaagtta ttcggaacga atggatagta
    68161 ctttcttttt gaaaaaatac ttaaaccatc cgagttttaa ttttccatta tcgctgaatg
    68221 aggtttctct gattaaaagt ggtacaacac caacagatcg agatgataac ttaaaagagg
    68281 gggttgtctt attaaaaacc aatgatatta ggaataatct attaaataag tactcttcgg
    68341 tagattattt tattagcgaa gatatcaatg agaaaatgat ttcatcacaa ctgaaagaag
    68401 gggatgtttt agtaaatatc gttggtgcaa ctttggaggt tgttggtcgg gtagcttatg
    68461 ttagtagcac ttttccaaaa gcaaatatta cacaagcaat gtcttttgta agattaaaat
    68521 caaaatataa taaagaatta ttaccaacgt atttatttgc ttttttacaa agttcttatg
    68581 gaaaaatcca aattaaccgg aatgcacgcc caacaggaca atacaatctg aataatgagg
    68641 agcttggtgc gattaaagtc cccttaattg atctagaaac acaaaagcag gtagataaaa
    68701 tcattaagca aagtaatgat tttgtacaaa aatcaacaca aagttaccaa gaagctgaaa
    68761 ctttattatt agaaaatctc ggtttgagag cttttcaagc tgatagcaat cctgtaaatg
    68821 ttaaatcctt aaaagagagt ttcttacaaa caggacgatt agatgcagag tattatcaaa
    68881 ctaaatatga gcaatactgg aatttaattc aatcgcaaga ttatgttttt attcgtgatg
    68941 aatatttaca tatcacccaa aaacctgatt ggacaaaacc gatgtatcaa tatattgaaa
    69001 ttggtgatgt taatattggt gatggttcat atcaaacgaa ttggatagag acacaagaat
    69061 tacctgctaa tgctaaaact caagcccaaa caggtgatat tttaatttca accgttcgcc
    69121 cttatcgtgg tgcagtaaca attatcggtg aaaatgatca agatttagtt gttagtggtg
    69181 cgtttacagt attacgcaga aaggaaaact ctgtttttaa taatgaagtt ttaaaggtgc
    69241 tattacggtc agaactatat aaagattggt tactacaatt taatgtaggt acgagttatc
    69301 ctgtaattaa agataacgat attttgaatt taccaattcc taaaataagt ggagaaatcc
    69361 aagaaaaaat tgctgaatat atccgccaaa gcaacgattt aaggcagcaa gcacaaaatt
    69421 tactcgctca agctaaaaat aatgtagagt ttgaaattga aaataattca tttaatatca
    69481 atgagttaga
//
LOCUS       DANMBQ010000002        68713 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.002, whole genome shotgun sequence.
ACCESSION   DANMBQ010000002 DANMBQ010000000
VERSION     DANMBQ010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 68713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 68713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..68713
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.002"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            108..1223
                     /gene="asd"
                     /locus_tag="PXE92_000078"
     CDS             108..1223
                     /gene="asd"
                     /locus_tag="PXE92_000078"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDL5759375.1"
                     /translation="MQNVGFIGWRGMVGSVLMDRMVEENNFANINPVFFTTSQAGQKA
                     PVFGGKDAGELKNAFDIEELKKLDIIVTCQGGDYTNEVYPKLKETGWNGYWIDAASAL
                     RMKDDAIIVLDPVNQHVISEGLKNGIKTFVGGNCTVSLMLMAIGGLFEKDLVEWVSVA
                     TYQAASGAGAKNMRELLSQMGELEDSVKAELANPASSILDIERKVTAKMRAEDFPTEN
                     FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRC
                     HSQAFTIKLKKDIPLAEIEQIIAAHNEWVKVIPNDKETTLRELTPAKVTGTLSVPVGR
                     LRKLAMGGEYLAAFTVGDQLLWGAAEPVRRILVQLTQ"
     gene            1333..2259
                     /locus_tag="PXE92_000079"
     CDS             1333..2259
                     /locus_tag="PXE92_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5759376.1"
                     /translation="MKPIFLEIRHLRTLIALKESGSVSLAAKRVHLTQSALSHQIKLL
                     EEQYDLTLFERKSSPIRFTPAGERLIKLAYDILPKVIEAELDLARVKQGEVGEVRVAV
                     ECHTCFDWLMPAMDTFRQHWPLVELDIVSGFHTDTVGLLLSHRADLAIVAEEEDSAGI
                     IYKPLFSYEMVAICSKDHPLATKDVWEAEDFKDETLITYPVPDDMLDLLRKILGPAGI
                     KVTRRNSELTIAIIQLVASRRGIAALPYWAVKPYLDRGYVVARKITQQGLYSTLYGAI
                     READATLAYLDDFHDTVKSQSFATLPGLMVLE"
     gene            complement(2326..3771)
                     /gene="pntB"
                     /locus_tag="PXE92_000080"
     CDS             complement(2326..3771)
                     /gene="pntB"
                     /locus_tag="PXE92_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HDL5759377.1"
                     /translation="MSFGFVTAAYIIAAILFIMSLAGLSKHETAKAGCWYGIVGMAIA
                     LVATIFGPQSHGTIWILIAMAIGGFIGVKKALKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYGLHTNALMPANLDETAQAAFLAEQATLANIHNVEVFLGIFIGAVTFSGSLVAFG
                     KLSGKLFGRKVSSAALNIPHKHKWNLAAIIVSVFLMIVFLNNPHNIFPVLIMTIIALV
                     FGWHLVSSIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYI
                     MCKAMNRSFISVIAGGFGNEVQSGKGDEEYGEHRETKAEEVAEMLKNASSVIITPGYG
                     MAVAQAQYPVAEITAKLREKGVNVRFGIHPVAGRLPGHMNVLLAEAKVPYDVVLEMDE
                     INDDFEETDVVLVIGANDTVNPAALDDPSSPIAGMPVLEVWKAQNVIVFKRSMAVGYA
                     GVQNPLFFKENTQMLFGDAKERVDDILRALN"
     gene            complement(3786..5324)
                     /gene="pntA"
                     /locus_tag="PXE92_000081"
     CDS             complement(3786..5324)
                     /gene="pntA"
                     /locus_tag="PXE92_000081"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HDL5759378.1"
                     /translation="MLIGVPRELLDGETRVAATPKTVEQIKKLGFDVLVEQDAGFKAS
                     FEDNTFLNAGANIGTQQEVWNADIIFKVNAPTEAEIELIKEGVTLVSFIWPAQNPQLM
                     EKLQSKKINVLAMDAVPRISRAQALDALSSMANISGYRAVIEAANAFGSFFTGQITAA
                     GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDSRPEVKEQVKSMGADFLEIDFEE
                     EGGSGDGYAKVMSEEFNRRAMALYAEQAKEVDIIITTAAIPGKPAPRLITKEMVDSMK
                     PGSVIVDLAAATGGNCEYTKAGEIVVTDNQVKVIGYTDFPARLPTQSSQLYGTNLVNL
                     LKLLAPNKDGQIEINFDDVVLRGVTVVRDGELTWPAPPIQVSAQLQKQAAAPQAVKKE
                     EKPADPRVKYGVMAAAGVLFLWLASVAPAAFLSHFTVFVLACVVGYYVVWNVSHALHT
                     PLMAVTNAISGIIIVGAVLQIAQPTGNFFIDILAFIAILVASINIFGGFKVTQRMLAM
                     FRKG"
     gene            5504..6220
                     /gene="trmJ"
                     /locus_tag="PXE92_000082"
     CDS             5504..6220
                     /gene="trmJ"
                     /locus_tag="PXE92_000082"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HDL5759379.1"
                     /translation="MQILNQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQPL
                     DEQAEALAAGAKDVLDNAQCYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELV
                     VNRTNLGKVAIVFGRERVGLTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRM
                     AYLQNSGEKQPLAADKDYPTAQALEHFFAHTERLYTELGFIRNDSVMLKLRRLYQRAE
                     LETNELNLLRGMLTAVEKAN"
     gene            complement(6302..8802)
                     /locus_tag="PXE92_000083"
                     /pseudo
     CDS             complement(6302..8802)
                     /locus_tag="PXE92_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651737.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan phosphorylase"
     gene            complement(8897..10333)
                     /gene="glgA"
                     /locus_tag="PXE92_000084"
     CDS             complement(8897..10333)
                     /gene="glgA"
                     /locus_tag="PXE92_000084"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HDL5759380.1"
                     /translation="MKVLHICSEMYPLIKTGGLADVMGALPFAQQQAGNDVRVLIPYY
                     PKVAQTLGETVEVATIGTFAGTVSVRFAYFNGLGVYVIDAPHLFMRDGNPYHDSNYQD
                     YPDNYKRFALLGYIGAQLAQGLDHWWGTAQVLHAHDWQAGLACAYLKSWGSNVKTLFT
                     IHNIAYIGRFNAFHLAELGLPWEFFHAEGLEFYGEISYLKAGLYFADRITTVSPTYAR
                     EITEEIAGAGLHGLLATRQYQGRLRGILNGVDAEVWNPETDTHIVVNYRANYMHGKAK
                     NKAELQRIFGLPEDKEALLMVMVTRLTEQKGADFLLANIDTLMQHKVQIIVLGSGSPD
                     LENALRYFQHKYPNQIGVKIGYDEALSHQIIAGGDLILVPSRFEPCGLTQLYGLKYGT
                     LPLVRRTGGLADTVVDSHKESIENRSATGFVFDYPDAPAFLEAAMRAISLWQKQKLWS
                     SVRQNALAQDFGWAKVAEQYQNLYHEII"
     gene            complement(10456..11769)
                     /gene="glgC"
                     /locus_tag="PXE92_000085"
     CDS             complement(10456..11769)
                     /gene="glgC"
                     /locus_tag="PXE92_000085"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HDL5759381.1"
                     /translation="MLNQESTALVARQDLTNDTLVLILAGGRGSRLYELTDKRAKPAV
                     YFGGSRRIIDFALSNCINSNLLKIGVITQYAAHSLLRHLQRGWSFLPYERNQYIDMLP
                     ARQQLDENTWYRGTADAVYQNMAMMKSHYRPKYVVILAGDHIYKMDYTQMLKDHVDQG
                     AKCTVGCIEVPRSQATEFGVMAVNEKLKVKEFVEKPADPPAMPGKPDSSLASMGIYVF
                     NADYLYEMLEKEASTPGTSHDFGKDIIPKAVEQGVLYAHPFERSCKGRNASGAIYWRD
                     VGTIDSYWAAHMDLVSEDPELDLYDESWPIHGRPQQTAPARFFYNRARARTLDNSLIA
                     GGCVITDAEISNSVLFNRVHVEAESVIEHTVILPQVTIGKNCVIKRAVIDRHCVIPDG
                     LEIGVNAEEDAKRFRVSKNGIVLVTQSMLDKLAGKEANSDIKYTI"
     gene            complement(11762..13774)
                     /gene="glgX"
                     /locus_tag="PXE92_000086"
     CDS             complement(11762..13774)
                     /gene="glgX"
                     /locus_tag="PXE92_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HDL5759382.1"
                     /translation="MHYFRGKPFPLGNKLDRQAGEFGTNFAIVSQNATAIELCLFDEN
                     HHETRIPMFSSGDTWHIFVAGVQAGTKYGYRVKGIQDEQAGLLFNPQKLLTDPYAKAI
                     EGKPDLSSAEAAAWYKWNDERDNASLAPKSIVIDEHFDWENDSQLFTPWAETIIYEMQ
                     VKGFSQRNFQIPSDIRGTFAGLAHPVSIDYLKTLGITAVELLPVTYHIDETHLQKQGL
                     VNYWGYNVLGNFAIDPNLAADKQNPLKEFKQLVKTLHQAHIEVIMDIVFNHTAESDKN
                     GPMLSFRGIDNTAYWLDKQGEYENWTGCGNTLNLSNPYILCWAIDCLIYWVEECHIDG
                     FRFDLASILGRTPSFSEKADFFTALKSHSKLTHIKLIAEPWDIGVEGYQLGQFPEPFY
                     QWNDCYRDDIRRFWLQNQGDWGLLARRLAGSDDVFTKYSVSKSINFITAHDGFTLQDL
                     TSYQQKHNWANGEQNRDGHNSNYSNNHGVEGQTADELVKKQREITACSLLATLFLSAG
                     VPMLLAGDEIGHSQQGNNNSYCQDNEITWLDWENMNHTRLDYVRSLIRLRKKIALLSK
                     QNNWWQEDSVQWLNPSAQLMNIDDWHNQHNGLVVLLQEEWLLLFNANRQPQPFLLPQG
                     NWKVVLEQAQGILMTDTQAVTLNNMGVCVLQKSDVMFANKLETQYA"
     gene            complement(13798..16020)
                     /gene="glgB"
                     /locus_tag="PXE92_000087"
     CDS             complement(13798..16020)
                     /gene="glgB"
                     /locus_tag="PXE92_000087"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HDL5759383.1"
                     /translation="MQDYTYSEKDAFFVERLSSGSCNDPFSYLGIHPSNNGVIIRVFL
                     PSAIACQVIDLNGKPVSSMLKIDDRGFFIAELIGKKTDFSYRLLVEYPDSTVDIEDPY
                     RFKTHIQELDNWLFAEGKQLRPYEKLGAHLVTQNEVGGVHFSVWAPNAQRVSVVGDFN
                     HWNGLVHSMRFHPDSGIWDIFLPNVKKGECYKFEVLDRNGVLRLKSDPYAFASQFRPE
                     TASIVSGLPSIVPAEKTCRNANAPDKPISIYEVHLGSWRRNIENNYWLSYEELADELI
                     PYVKDMGFTHIELLPISEFPFDGSWGYQTTGIYSPTSRFGTPEGLSYFIQKAHDKGIG
                     VILDWVVGHFPVDEHGLVYFDGTHLYEHSDPKEGYHKDWNTLIFSYGRNEVSNYLSGN
                     ALYWIERFGIDALRVDAVASMIYRDYSRSDGEWIPNKYGGRENLEAIDFLRHTNNILR
                     DESQGGASIAEESTSFAGVSHSTERGGLGFNYKWNMGWMNDTLRYMQKDPIYRRYHHN
                     LMTFGMTYQYSEQFVLPLSHDEVVHGKGSLLNKMPGDCWQKFANLRAYYGYMWGYPGK
                     KLLFMGNEFAQGKEWNFAESLDWYLLGEEGGEWHKGVLGWVKALNHLYTQTPALFEQD
                     YNPEGFEWLVVDDHDNSVFAFERKAKNGDSVIVVSNFTPIVRENYRFGVNELAEYQEI
                     LNSDLACYCGSNVSNANRFASELIASHGKAYSLSITLPPLSTIFLKRAADKKTKQNKT
                     "
     gene            16308..17786
                     /gene="fruB"
                     /locus_tag="PXE92_000088"
     CDS             16308..17786
                     /gene="fruB"
                     /locus_tag="PXE92_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HDL5759384.1"
                     /translation="MLNLSAKNIRLNGSASNKEEVIRFVAAELVAKGNVAAGYEVGML
                     NRETQTSTFLGNGIAIPHGTLDTRDLVKETGVQIIQLPQGVEWGEGNTAYVVIGIAAK
                     SDEHLTLLRQLTTVLSDEEAAATLAKTQNLDEFIAVLSGKKNLPALSQELISLNIESS
                     SPITLSAINAAKLQEQGYVSQAFISDVVANKALHLGNNLFVVDSAKGNQANGIAIARN
                     TQGQTLLTVAETDNALQPLLTQLLKPEVRSQFAHFSAEQMLGLLKGESVASTPVTNVE
                     ASGNQVVGTFTIRNDNGLHARPAAVLVQTVKPFSSKISVENLDRNTAPASAKSAMKVV
                     ALGASQGHRLRFVAEGEDAQQAIEALQQAIINGLGESVSFVPAVADTIESIAVSAIPA
                     EETATAVDANTKEATFVIKNEHGLHARPSAVLVNEVKKFNAKIEVQNVDKNSPLVSAK
                     SLMKIVALGVTKGTTLRFVASGDDAEVALAAIGAAIEAGLGE"
     gene            17800..18744
                     /gene="fruK"
                     /locus_tag="PXE92_000089"
     CDS             17800..18744
                     /gene="fruK"
                     /locus_tag="PXE92_000089"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HDL5759385.1"
                     /translation="MRIATVTLNPAFDLVGKLQRIEIGEVNTVETLGLYPAGKGINVA
                     KVLADLGTKLSVTGFLGEENQGDFVNAFKHNDLADEFYRINGKTRINVKITETEADVT
                     DLNFLGFEISESDWEKFVTLSHQWESKFDLVAVCGSLPRGVTPEKFASWLESLHRQGL
                     KVVLDTSNAALTAGLTAHPWLVKPNRRELEVLVGHSLNSIEEIISAAKQLRSRGIENV
                     IISMGEQGSLWLNHEGVLQARPPRCENVVSTVGAGDSMVASLIYGLSQGWSKEQTLRF
                     ASATSALAVVQSNVGIADRAALDDIIKQTDITVISENH"
     gene            18770..20434
                     /locus_tag="PXE92_000090"
     CDS             18770..20434
                     /locus_tag="PXE92_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL5759386.1"
                     /translation="MNISFVFPQTLGNARRFLVNEMLSAAAKQQGHNVVAANQADFVV
                     LFDNAIPQEAAGKQGAILDLEQAFAQPEASLKQAVENAQTFANATATTAVSAVSSGVK
                     NIVAVTACPTGVAHTFMSAEAIENYAKAQGWNIKVETRGQVGAGNPISAEEVAAADLV
                     FVAADIDVDLEKFKGKPMYRTSTGLALKKTTQEFEKAFAQAKIYEGGVAKADNAEAPT
                     SEKKGLYKHLMTGVSHMLPLVVAGGLLIAISFMFGIEAFKDETIAGGLPKALMDIGGG
                     AAFHLMIAVFAGYVAFSIADRPGLAVGLIGGMLATTAGAGILGGIVAGFLAGYTVKFL
                     NGAIQLPASLTSLKPILILPLLGSAIVGLLMIYVINPPVKALMDALVEWLNTMGQTNA
                     IILGIILGAMMCTDMGGPVNKAAYTFGVGLIASQQYMPMAAVMAAGMVPPIGMAIATL
                     IARSKFNTNQRDAGKASFVLGLCFISEGALPFVAADPVRVIASSILGGATAGAISMAL
                     GITLQAPHGGLFVIPFVSQPLMYLAAIAIGSLVTGVVYAAIKQKAE"
     gene            20601..21119
                     /locus_tag="PXE92_000091"
     CDS             20601..21119
                     /locus_tag="PXE92_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lhr family helicase"
                     /protein_id="HDL5759387.1"
                     /translation="MILLRGDTMQFIEFTDPDSGISYQYSEFTIANVAFIINFCSDAD
                     VISTLSALGKDITNYINTYSCCTIKFMAKEHLENSGSNIDIYAPAANHQFKRKEIIAL
                     QETLERLLFEHYVRFTPESYLFIAERDSLNRMYQRMCVPRCDFMQSFQVVYPLGVNQD
                     CFILITPKGNLK"
     gene            complement(21272..22135)
                     /gene="rarD"
                     /locus_tag="PXE92_000092"
     CDS             complement(21272..22135)
                     /gene="rarD"
                     /locus_tag="PXE92_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5759388.1"
                     /translation="MLKGILASLAANVLFGAVYYFAILLRPLEGEAMFGFRIVVVIPF
                     ILLAIILFKQQSAFADLLQKIRQNPPLVLVILLLALNTGVQLWLFLWAPNHGQALQVS
                     FGYLLLPIVAVALGKMVFKEHFTRLKWLSLLFAVIGVGSSLFFNSTISWATWVAGLGY
                     PLYITLRRYFQINTLATFFVELLLVLPVALYYLSQVEMTPIVAENPQIYFYLGLLGLV
                     SGSAFILYILSSNLLPINVLGLLGYVEPLVMLLISFAIGEKLDANSYILMVCLLVSIG
                     LLSWDSFRSKV"
     gene            22313..22897
                     /locus_tag="PXE92_000093"
     CDS             22313..22897
                     /locus_tag="PXE92_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HDL5759389.1"
                     /translation="MKKIFWILLIAMLAVGGYSLTKYNDLMRAEEDINSVWGNVESAY
                     QRRADLIPNLVNTVKGQANFEKETLTSVIEARAKATAVTIDPSNATEEQMAKFQEAQQ
                     GVNSALSRLLVSVEKYPELKAHEAFLNLQAQLEGTENRINVERNNFNEKVKEYNKQVR
                     EFPTKLAAMIMGFKAKPQFKSEAGSDKAPTVNFN"
     gene            22979..23437
                     /locus_tag="PXE92_000094"
     CDS             22979..23437
                     /locus_tag="PXE92_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL5759390.1"
                     /translation="MGLFSFLSNKLPIDTQRIEQAIADLEQKTSAELRVVVERKAKIG
                     KTDNAAMLRASELFDELKMRETAEHNGVLIYLSFKPHYAAIIGDEGIHQKVDNDFWQK
                     IYATMCLDCQQGDYTQAICDAIKMVEAPLAHHFPYQADDKNELSNEVVVK"
     gene            23434..24291
                     /locus_tag="PXE92_000095"
     CDS             23434..24291
                     /locus_tag="PXE92_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL5759391.1"
                     /translation="MMKSLCKFLSIFNRLLLVCLALFSLNATAVTYPEPPNPFYYITD
                     YTKNTLSQQEWRTLEDALIANCAKTSSQIAVVIIPSTEGEAVSTYAHTLFNKWGIGRS
                     KNNENNGILLLIAKNDRKLFIATGRGLEGALPDAIASSIIRNDITPFFKQEQYAAGIA
                     HGLSAIMAAINGEYAPYASYGEEMQEFDDIDGLLFFLFAGIVIFLIFRPRGNSTYISP
                     SSMDQLGQILRESQRRGGGFGGGLGGGFDRGSGGFGGGFGGGFGGSRGSGDSFGGGSS
                     GGGGAGGSW"
     gene            complement(24406..24885)
                     /gene="ispF"
                     /locus_tag="PXE92_000096"
     CDS             complement(24406..24885)
                     /gene="ispF"
                     /locus_tag="PXE92_000096"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HDL5759392.1"
                     /translation="MIRIGHGFDVHAFGEDRPLMIAGVEVPYHTGFIAHSDGDVALHA
                     LTDALLGAAALGDIGKLFPDTDMQYKNADSRGLLIEAYRQVQEQGYQVGNVDVTIIAQ
                     APKMRPHIDKMRQVIADDLQCDISQVNVKATTTEKLGFTGRGEGIACEAVALLLKRA"
     gene            complement(24887..25570)
                     /gene="ispD"
                     /locus_tag="PXE92_000097"
     CDS             complement(24887..25570)
                     /gene="ispD"
                     /locus_tag="PXE92_000097"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HDL5759393.1"
                     /translation="MKRKIIAVIPASGVGSRMQAEKPKQYLQLKGKTILEHTVSIFLE
                     HPHVEKVIVAVARKDPFYSTLELLKSPKIQLVFGGETRADSVLNALQEINTENAWALV
                     HDAARPCLKRSDLDKLLQINDPQGGILAIPAVDTMKRANGTKIAHTEDRSTLWHALTP
                     QFFPAQALKQALSSAFANKLQVTDEASAMELAGYQPQLVSGRSDNIKITRPEDLALAE
                     FYLTHNLEN"
     gene            complement(25588..25866)
                     /gene="ftsB"
                     /locus_tag="PXE92_000098"
     CDS             complement(25588..25866)
                     /gene="ftsB"
                     /locus_tag="PXE92_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HDL5759394.1"
                     /translation="MRLLITFFALLLGFFQYSFWFGKNGWSDYQEVQEEIALLKVENT
                     KLTSRNKLIEAEIYDLKNGVDALEERARLEREMVKENEMFYRIVPKNK"
     gene            26141..27748
                     /gene="pckA"
                     /locus_tag="PXE92_000099"
     CDS             26141..27748
                     /gene="pckA"
                     /locus_tag="PXE92_000099"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDL5759395.1"
                     /translation="MLNRIEQELADLGITNVKEIVRNPSYEQLFEEEMKSDLKGYEKG
                     VLTNLGAVAVDTGIFTGRSPKDKYIVLDETTKDTVWWTSDAAKNDNKPMTQSTWQSLK
                     TLVTDELSNKRLFIIDAFCGASPEHRINVRIITQVAWQAHFVKNMFIRPTEEELKDFK
                     PDFVVMNGSQVTNPNWKEQGLNSENFVAFNITEGVQIIGGTWYGGEMKKGMFSMMNYF
                     LPLKGVASMHCSANVGEEGDVAVFFGLSGTGKTTLSTDPKRKLIGDDEHGWDENGVFN
                     YEGGCYAKTINLSIENEPDIYRAIRRDALLENVVVREDGTIDFDDKSKTENTRVSYPI
                     YHIDNIAVPSKAGHAKKVIFLTADAFGVLPPVSKLTPEQTKYYFLSGFTAKLAGTERG
                     ITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMEAAGAEAYLVNTGWNGTGKRISIKDT
                     RGIIDAILDGSIEKAEMSTLPIFNLAIPTALPGVETHILDPRNTYEDKAQWQAKAEDL
                     AGRFVKNFEKYATNEEGKALIAAGPKL"
     gene            27841..28842
                     /gene="bioB"
                     /locus_tag="PXE92_000100"
     CDS             27841..28842
                     /gene="bioB"
                     /locus_tag="PXE92_000100"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HDL5759396.1"
                     /translation="MTTFQLRLKAKDELTPHPTAQYWRKCQVEGLFDLPFMDLVFRAA
                     QVHRENFDANAIQLSTLLSIKTGGCPEDCEYCPQSARYDTGIEKQTMLDVETIVEKAK
                     IAKERGASRFCMGAAWRGPRPKDIKVVSEIINAVKSLGLETCGTFGMLEEGMAEELKQ
                     AGLDYYNHNLDTDPERYNKIIHTRNHEDRMDTLGKVRNAGLKVCCGGIVGMNETRPER
                     AGLIASLANLDPQPESVPINQLIKVEGTPLTNAEDLDWTEFVRTIAVARITMPQSFVR
                     LSAGRTTMPEAMQALCFMAGANSIFYGDKLLTTENPEEDHDRQLMDKLDLYPLQYIA"
     gene            29002..29099
                     /gene="ffs"
                     /locus_tag="PXE92_000101"
     ncRNA           29002..29099
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="PXE92_000101"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            29134..29841
                     /gene="gloB"
                     /locus_tag="PXE92_000102"
     CDS             29134..29841
                     /gene="gloB"
                     /locus_tag="PXE92_000102"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HDL5759397.1"
                     /translation="MLQITPIPALKDNYIWAIRNGQDVIIIDPSEHQPALNFIAKNAL
                     NLTAILITHNHHDHTDGVSGIVEQYPNIPVYGPQEVAEFANVIVSPEQHISLFGYDVR
                     IIESGGHTAGHISYLFGYDYLFCGDALFSGGCGRVFTGDYQAQFDALQRFKNLPNSVK
                     AYPAHEYTKSNLKFAEAVLPPSCVLSEYQEQVDLLRSQNKPTLPTTIGLEMQVNPFMQ
                     AVDLAEFIALRQQKDNF"
     gene            30000..30713
                     /gene="uppS"
                     /locus_tag="PXE92_000103"
     CDS             30000..30713
                     /gene="uppS"
                     /locus_tag="PXE92_000103"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HDL5759398.1"
                     /translation="MNFDPQNMPKHVAIIMDGNGRWAKQKGKLRIFGHQNGVKAVRSA
                     VSFAAKHHIQVLTLYAFSSENWSRPETEVSALMSLFMKALDSEVKQLHKNNIRLKIIG
                     DKSAFSENLQKRIAESEKLTENNTGLILNIAANYGGYWDIVQAAQQLAVHVKSEQLAV
                     EQITPALFQQHLVTENQPQVDLLIRTSGEQRISNFLLWQIAYAELFFSPVLWPDFNDE
                     AFSDAIYAYQQRERRFGGC"
     gene            30737..31606
                     /locus_tag="PXE92_000104"
     CDS             30737..31606
                     /locus_tag="PXE92_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDL5759399.1"
                     /translation="MLKERVLSAIIMIIAVLAAIFWLSPLPLTLVLSAIVVAAMWEWA
                     QFAGFKHPVPRAIVAMVTICLLLFAIVANTDYIRATRFITDETTPILFIGCIWWLIAL
                     VLVATYPNSAKLWEKSVAAKFLFGLATLVPFLIGTLALRFHNYAFDPYQGTYLFLYVC
                     LLVWGADSGAYFAGRAFGKRKLAPKVSPGKSWEGVIGGVLTSSLIAFTFLQLTPANVF
                     GKALATTPFILVSVGMVAISVLGDLAESMFKRQAGIKDSSQLIPGHGGILDRIDSLTA
                     AVPFFATFFFFVL"
     gene            31610..32920
                     /gene="rseP"
                     /locus_tag="PXE92_000105"
     CDS             31610..32920
                     /gene="rseP"
                     /locus_tag="PXE92_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDL5759400.1"
                     /translation="MTSIIAFFILICVLVFVHEYGHFWAARKCGVKVIRFSIGFGKVL
                     FKKKDKQGTEFVFSLIPLGGYVQMWNDETDINAPAQQALNTKSVLQRAFIIIAGPAAN
                     FIFAILAYWVVFIAGIPTVKPVIGEILPNTIASQARIPTELEITKIGHQSIQDWESAS
                     LALVGFVGNKNVPLEGNINGNSTQKYELDLSNWSIDSAKENPLTALGIRPKSAKVTAE
                     IKQVVENSPASQVGIQAGDRILQINQQPFNWFNLVELVQAGKPIELKIEQRGQIKDLV
                     VQPEKKDERYIIGVIPSYEPLADKYRTELKYDILTAFYKSIEKVWSLTQTILQFIGNL
                     ISGDLSIKNLGGPISMAKGAGATAEIGLVYYLSFMALISVNLGVMNLFPLLPLDGGQL
                     VLLAVEAIRGKALSEKIQLKFQQIGFAFVLSLMLFAFANDIIHF"
     gene            33035..35416
                     /gene="bamA"
                     /locus_tag="PXE92_000106"
     CDS             33035..35416
                     /gene="bamA"
                     /locus_tag="PXE92_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HDL5759401.1"
                     /translation="MKKLLLSSLLIANGVVAAPFVVKDIRVEGVQPTTGESIISSIPV
                     RVGQTATDTDVSNVVRHLFSQQRFADVRATREGNTLVIKVAEKPIIGKVEIEGNQAIP
                     KDALEQNLKANLINQGEIFDAAKLEAFKEGLIEHYHSTGRYEAKIDTSVSNNTEGGVN
                     IKLAINEGEVAKAKTIKFEGNNAFSDKKLLENLDIQPDVSWWNIFESSKFEQTAYQKD
                     LETLRDFYLNRGYAKFAIQDTDVQFNDNKTEVALTYKLDEGSQYHVSEMRIIGNTANM
                     DSQLNALLKEFKPGQLFRKSDLTQIEEEIKSILGDAGYGSAKVDIYPQFNEENKTVKI
                     SFVVDAGRRIYVRKIRFEGNGVTADSTLRREMRQQEGAWLSTNKASLGKARLERTGFY
                     ESVDMSMPNVEGTADQVDVVYKIKERNTGSINFGIGYGTKNGISYQAGIKQDNFLGMG
                     STISLNGTRNNYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSDNDSMASYKRQTYG
                     INGTLGFPVNENNSYYLGLGYTHDKIKNAAREYTREKYVKSMNFEFDPAADYYKKIKA
                     DDFDFSLGWNYNSLNRGYFPTEGTTANIGGKITIPGSDNKYYRVSADFRNYYPLNREH
                     KWVISTKASIAYTNGFGGKEVPFYQLYTAGGIGTLRGFSYGAVGPQAIYYNTKSGKFD
                     SMNNDIIGGNALAAASLELITPTPFVSEKYQHNVRTSLFVDAASAWNTKWKKDEYTNL
                     PDYGDFKRFRASAGIAFQWMSPIGPLSFSYAKPIRKYDNDDIEQFQFNIGSSF"
     gene            35496..36287
                     /locus_tag="PXE92_000107"
     CDS             35496..36287
                     /locus_tag="PXE92_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HDL5759402.1"
                     /translation="MKKLFKMTGLAVALASTTGIANAADTIGFVDPSYVLQNHPVLLD
                     ASAKFDKFMKESQEKFAADEKKLADENKTLTAERNKINEDAQKLQNEQKNVEASIKKK
                     VAALEKDAPRLRSKEIQARQNAIQKEANAFQAKVTAIQKREADFAKKAEAFQKRADEF
                     QKRIEQANKENGGINPQEAQKQAVDEVNATIKEIAKSKGYTLVLQPQVALYAEDEGKD
                     ITEAVLDAIVKKHPEIKIEKPATEAQPATEKETKAEETKPEEAKK"
     gene            36287..37312
                     /gene="lpxD"
                     /locus_tag="PXE92_000108"
     CDS             36287..37312
                     /gene="lpxD"
                     /locus_tag="PXE92_000108"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HDL5759403.1"
                     /translation="MANFRLIDLAEHIGGTLRGNADLAIQSIAALDKADSSQITFISN
                     AKYRENLTACNAGAIIVSPADVEFCRADQNLIIVANPYVAYAQLAQYMDSTPKAASEI
                     HPSAVISPEAKLGNNVSVGANAVIESGVELGDDAVIGAGCFVGKNSKIGARTQLWANV
                     SVYHNVQIGADCLIQSSTVIGSDGFGYANDKGQWIKIPQTGGVIIGNRVEIGACTCID
                     RGALDPTVIEDNVIIDNLCQIAHNVHIGFGTAVAGGVIMAGSLKVGRFCQIGGASVIN
                     GHMEICDGAIITGMGMVMRPITEKGIYSSGIPLQTNKEWRKTAALVMNIDEMNKRLKS
                     LEKRFND"
     gene            37341..37799
                     /gene="fabZ"
                     /locus_tag="PXE92_000109"
     CDS             37341..37799
                     /gene="fabZ"
                     /locus_tag="PXE92_000109"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDL5759404.1"
                     /translation="MTTENREPNIIEVTEIMDMLPHRYPFLLVDRVTDYEEGKWLKAI
                     KNVTFNEPCFTGHFPGAPIFPGVLILEAMAQATGVLAVATYGKLSEDELYYFAAIDNA
                     RFKRPVVPGDQLQLEVEFLKEVRGITKFTGKAYVDGKLVCEADLMCARRK"
     gene            37833..38627
                     /gene="lpxA"
                     /locus_tag="PXE92_000110"
     CDS             37833..38627
                     /gene="lpxA"
                     /locus_tag="PXE92_000110"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HDL5759405.1"
                     /translation="MRLIDSTAKISPLAIIEEGAEIGAHVEIGPFSVIGKDVKIGART
                     KIHSNVVINGMTEIGEDNHIFQFASIGEINQDLKYQGEPTKVVIGNRNRIRESVTIHR
                     GTVQGGGVTKIGDDNLFMINTHIAHDCSIGNRCIIANNGTLAGHVTLDDFVIVGGMSA
                     IHQFVVIGSHVMLGGGSMVSQDVPPYVMAQGNHARPFGINFEGLKRRGFDKPTMHAIR
                     KVYKLIYSSGKTLEECLVEIEQIAATEPAIAIFKQFFKRSTRGIIR"
     gene            complement(38665..40665)
                     /gene="mnmC"
                     /locus_tag="PXE92_000111"
     CDS             complement(38665..40665)
                     /gene="mnmC"
                     /locus_tag="PXE92_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HDL5759406.1"
                     /translation="MGKLTFATLTFNDADTPVSEQFDDIYFSTQDGLAESYYVFQEGN
                     QLWEKWQSHPKEAFVIAETGFGTGLNFLAVADKFQQFRAAFPQSKLKRLYFISFEKFP
                     LTASQLADIHQRYPQFATLSENLTACWQPRQIGCQRYHFEQVYLDLWFGEIAENLPQL
                     GDLYSGTIDAWFLDGFSPDKNPEMWNEQLYLQMFRLSANGGSFATFTASSMVRRGLEA
                     AGFAVKKRKGFGKKREMLWGEKPLDSQVSEPNYPYFYAKNETADDIAIIGGGVASFFV
                     ALSLLEKGKQVTLYCKDETLAINASGNLQGAIYPQLSDDDERNVQFYIHSFDYALQRL
                     QQLKSNIEFEHNLSGVVLYAYDEKTAKKLEKMVEQTADDTLLKSCSQAELSEKLGLSV
                     PNSGAFIPQAGWLSPVQLVRNGFTWLEQKGLKIVLNHKVEHLTFSNGMWQWQTRGETV
                     RHQAVVLANGHTLNEFSQANGIPLYPVRGQVSQIPTTSELQKLKCVLCYDGYLTPMSA
                     YGTHCIGASHIRDNAETEFSLSEHWENVAKLQQNVTVCEWTQGIDLSENKAKVGIRAA
                     FRDRVPMVGAVHHFEQQKSQYANLYNQLRRKQAVENAEIFTNLYMVNGLSSRGLTTAP
                     LLGELLASLIVNEPVPISEDIWHNLSPNRAWIRKLLKGSTVA"
     gene            complement(40890..42326)
                     /gene="trpCF"
                     /locus_tag="PXE92_000112"
     CDS             complement(40890..42326)
                     /gene="trpCF"
                     /locus_tag="PXE92_000112"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HDL5759407.1"
                     /translation="MQNIVQDNAQPNQPTILQKIVQDKAIWVAQKEQAFPLSEFQHKI
                     VKSDHDFYAALAKGTHQEPAYILECKKASPSKGLIRAEFDLDSIAQVYKNYAAAISVL
                     TDEQYFQGDFRYIDQVKRQTTQPILCKDFMISAYQVYLARFYNADAILLMLSVVNDET
                     YRELATLAHELGMGVLTETSTEAEFERALALGAKVIGVNNRDLHTLTIDMNRIVRLVE
                     KYQAQISADVCLISESGINDHQQVKNIKPYVHAFLIGSSLMGSADLNNAVRAVIFGEN
                     KVCGLTRVQDVKAVYEQGALYGGLIFAEGSPRQLSLRQAQELVVNAPLRYVGVFQNQA
                     VEFVEKMAKQLELFAVQLHGSEDEQYIAELAEKLGSKTQIWKALSVDVEVENLEFNDN
                     PQIARYVLDSKVGNQQGGTGKTFNWALIPETLKQKALLAGGIGTENIEQALAQGCVGL
                     DLNSGVESAKGVKDLQKLTACFGKIIQA"
     gene            42414..42725
                     /locus_tag="PXE92_000113"
     CDS             42414..42725
                     /locus_tag="PXE92_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HDL5759408.1"
                     /translation="MKSQVIQHLSYLEIALRVNQLWEATPPSPEALANEQPFCVETLT
                     PTQWLQWIFIPRMRAILDANADLPRNFAITPYLEEALKNEGYLQAICEPLLGLEKLLK
                     D"
     gene            42879..43607
                     /gene="truC"
                     /locus_tag="PXE92_000114"
     CDS             42879..43607
                     /gene="truC"
                     /locus_tag="PXE92_000114"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HDL5759409.1"
                     /translation="MTLDILYQDNSLIAINKPAGVLVHRSWLDKHETVFAMQTLRDQI
                     GQHVFPIHRLDRPTSGVLLFALNSETARIMSEQFEQHLVQKTYLAVVRGYLQGSAQID
                     YPLKVILDKIADKFSQEKEAQAAITDYKGLATVEMPYPVGKHQTSRYSLVELSPKTGR
                     KHQLRRHLKHLFHPIMGDSKYGDLHQNRALVEKSGVSRLMLHAHKLQFQHPKNLQKIE
                     IIASLDEQWQRLFAFFDWNFTQYY"
     gene            43625..43789
                     /locus_tag="PXE92_000115"
     CDS             43625..43789
                     /locus_tag="PXE92_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HDL5759410.1"
                     /translation="MDNSLLSLTHEQQQAAVEEIQKLMAQGISAGEAIQIIANQLRDK
                     YQILEKSNNE"
     gene            43782..44258
                     /locus_tag="PXE92_000116"
     CDS             43782..44258
                     /locus_tag="PXE92_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759411.1"
                     /translation="MNKLWTVLALTITSHYSFAAAEKIVTKDLPAEGKPAVVLQVFDE
                     SEKIAKPIKGNKLFISKKQTRLCWHSINLPVQNKVTIAEAFYAPAAMKLASPGSKINS
                     SADKKNHTIITEINLANNQVLNRCWGFDKTDPVGKYKMEIQINDHIFKGLEFEIVK"
     gene            complement(44295..45146)
                     /locus_tag="PXE92_000117"
     CDS             complement(44295..45146)
                     /locus_tag="PXE92_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HDL5759412.1"
                     /translation="MENQKQAEIELKIMLEQQNVALVENYLNQTSPFPVLAHQTELLG
                     NTYYDTPEQFFATQKMGLRVRSVNQQYEITLKTQGEIVGGLHIRPEYNLALPNSQPDF
                     QTLVEKYQLPFENSEQIAESLQAIFSTDFTRKTWLVQVGMSDIEVALDQGIIKNHFGE
                     EPICELEFEIKQGNLGDLFTLVEAMPKADGMWLSNLSKAQRGYLLGQAVKWEQKIATA
                     MDGENSEKLTQLLADFICVGNESLEVLVRFNQCTQQQFSNWQQARAFVKSKDYLLHNL
                     TNLKTMI"
     gene            45207..46616
                     /locus_tag="PXE92_000118"
     CDS             45207..46616
                     /locus_tag="PXE92_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HDL5759413.1"
                     /translation="MFSKIHHKLNNFVQRGLDNHLRLAVTGLSRSGKTAFITSLVDQL
                     LHINKGGNSHLNLFAPARHGQILSVKRVEQGDLTIPRFEYDKNRQSLENQPPQWPEST
                     TGISEIRLAIRYQRQHSLLRHIKETGTLYLDIFDYPGEWLLDLPLLSLSYKEWSQTQQ
                     TIHKDERAELATPWLQAVKKLDLFAKTDENLLAEFSQQYTDYLLACKAQGMQYIQPGR
                     FVLPTENAKGAPVFQFFPLLDLSEAEWEKLEQSDRNSIFHTLKKRYEHYQKKIVKPFY
                     EDYFSQFDRQVILADCLTPLNYGYNEFMEMKLGLQQLFKHFHYGNRSLFHRLFSSNID
                     KLLFIATKADHITSDQVPNLESLMRQLVQEGGRHAEFDGIETGYLAISSIQATDAVKV
                     TQQDKIIKAIRGIRSSDRKQVTLYPGSVPNRIPDKNYWQFNRFEFDQFEPKQLDYSQA
                     IPHFRMDSVLQFLLADMFE"
     gene            46662..47012
                     /locus_tag="PXE92_000119"
     CDS             46662..47012
                     /locus_tag="PXE92_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5759414.1"
                     /translation="MNTVISQRKPIHWVGSTLDDIREFPDNIKRELGFDLDLVQQGLL
                     PRDFKAMANLGSGVMEIRVKDPSGAFRLVYLAKFKDAIYCLHAFQKKTQKTAPKDIAV
                     IKARYAAVKELENE"
     gene            47005..47328
                     /locus_tag="PXE92_000120"
     CDS             47005..47328
                     /locus_tag="PXE92_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL5759415.1"
                     /translation="MNNIDTKIRHTTEAQGNVFEDLGFPIDEAQKLKSASQQLIETKL
                     MLMNEMSNWIDKNNLKQSEAASILGVSRPRISDMVNGKLEKFTLDTLVTFVAKTGKTI
                     QLQLS"
     gene            47436..47915
                     /gene="smpB"
                     /locus_tag="PXE92_000121"
     CDS             47436..47915
                     /gene="smpB"
                     /locus_tag="PXE92_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDL5759416.1"
                     /translation="MAKKPKVASNTIALNKRARHEYFIEDEIEAGLELQGWEVKALRA
                     GKGNISDSYVIFRHGEAFLFGAMITPLNMASTHIVSDPTRTRKLLLNKRELDSLFGKV
                     NREGYTIVATSMYWKNAWVKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNANRG"
     gene            48118..49425
                     /gene="serS"
                     /locus_tag="PXE92_000122"
     CDS             48118..49425
                     /gene="serS"
                     /locus_tag="PXE92_000122"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDL5759417.1"
                     /translation="MIDQNLLRTNLEDVATALKIKRNFILDVERVKTLEEQRKTLQVK
                     TETLQAERNTRSKNIGAAKARGEDISALLAEVDSMGNELDTAKVELDKVQAEIRELLL
                     SVPNLPADEVPLGKDDSENLEVLRWGEPRQFDFEVQDHVTLGENLNGLDFAAGVKLTA
                     SRFVVMKGKLARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLYGTGQLPKFGEDL
                     FHTQPLTGQDPNEVQRPFGLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRAEAG
                     SYGRDTRGLIRMHQFEKVEMVQIVAPEKSMEALEELTGHAEKVLQLLGLPYRKVLLCT
                     GDMGFGAAKTYDLEVWLPAQNTYREISSCSNMWDFQARRMSARCKAKGDKKTRLVHTL
                     NGSGLAVGRTLVAVLENYQNADGSITVPEVLRPYMGGLEVITA"
     gene            complement(49484..49810)
                     /locus_tag="PXE92_000123"
     CDS             complement(49484..49810)
                     /locus_tag="PXE92_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759418.1"
                     /translation="MVSVDFKNNLLEFIFYGLFSEHTQTNIINGLQFYPKAGVAFRKD
                     LRFRKRAVYQREIMVFYQLDKIDEPKKVTIIAFRLGRMKNPIRLDTVQNRRVVTEIFM
                     NYPEKD"
     gene            complement(49803..50015)
                     /locus_tag="PXE92_000124"
     CDS             complement(49803..50015)
                     /locus_tag="PXE92_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759419.1"
                     /translation="MSIVIVDTDFVVHKEDEEWTTEEIKMIEEHLLEEQSAQYQVKRE
                     VPKQFYADIAERLSRGDLTAWEQLDG"
     gene            50202..52787
                     /gene="leuS"
                     /locus_tag="PXE92_000125"
     CDS             50202..52787
                     /gene="leuS"
                     /locus_tag="PXE92_000125"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDL5759420.1"
                     /translation="MQQQYNPSEIEPKVQRYWAENKVFKAVKDVTKEKYYCLSMLPYP
                     SGKLHMGHVRNYTIGDVVSRYQRMIGKNVLQPMGWDAFGLPAEGAAVKNNTAPAKWTY
                     ENIEYMKGQLKMLGFSYDWDREVTTCRPEYYKWEQWFFTELYKKGLVYKKTSTVNWCP
                     NDETVLANEQVHEGCCWRCDTPVEQREIPQWFIKITDYAEELLNQLDNLPQWPDQVKT
                     MQRNWIGRSEGVEITFKIAGSNVELPVYTTRPDTFFGVSYVAIAAAHPLAELAAQNNP
                     ALAEFIREAKNTKVAEAELATMEKKGMATGLFAIHPLTGKEVPVWVANFVLMHYGTGA
                     VMAVPAHDERDFEFAQKYDLQINQVIQPLDGSEWDFSKAAYTEHGKLINSAEFDGLEF
                     DVAFTAIADKLEAMGVGKRQVNFRLRDWGVSRQRYWGAPIPMMTTEEGEVVTVPLQDL
                     PVILPEDVVMNGVQSPIKADPEWAKTTYNGKPALRETDTFDTFMESSWYYARYTCPQY
                     HEGMLDSDEANYWLPVDQYIGGIEHATMHLLYFRFFHKLLRDAGILNSDEPATKLLCQ
                     GMVLADAFYYTSPTNERIWVSPTQVTLERDEKGRIIKATDPQGRELVHSGMTKMSKSK
                     NNGIDPQEMVEKYGADTVRLFMMFASPAEMTLEWQESGVEGAKRFLGRVWNLVYSYAQ
                     NPATTALDVNALDKDQKELRRDVHKTIAKVSDDIGRRQTFNTAIAAVMELMNKLTKAP
                     LETEQDKAVMAEALSAVVRMLYPITPHICFELWQVLGNEQTIDFAPWVQADESAMVED
                     EKLVVVQVNGKVRGKITVSATATEDEVKAIAKADPNVAKFLDGQQIVKEIYVPFKMLS
                     FAVKA"
     gene            52987..53475
                     /locus_tag="PXE92_000126"
     CDS             52987..53475
                     /locus_tag="PXE92_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759421.1"
                     /translation="MIKKLSLIAVFALTACGWHFKNNEVLPESFRTLTFESADQHSEM
                     SRILRNQLQLSDVKLVPSTANVAKLRLVSTSTDSKVVSVFKQAREAEKILTLNVDAIA
                     DIPNKGQYPLEVSVHRTFFDDSRAALAKSAEKEMIMKDMYEQASRQLIIKMAGLKKEL
                     SK"
     gene            53518..54543
                     /gene="holA"
                     /locus_tag="PXE92_000127"
     CDS             53518..54543
                     /gene="holA"
                     /locus_tag="PXE92_000127"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDL5759422.1"
                     /translation="MQKIFPETLQFSLNKGLQPFYLLTGNDLLLVNETKDAIIHTARL
                     NGFDEKKEVEIKNDTNWEELFEAAQSMGLFFARQIMVLNFPDSPTATQFKKLAELCAF
                     IHSDLLFILHLPKFSKTMEKQAWFTQIELNLVQINCQTPELSKLPQWVSHRAKAMNLQ
                     IENEANQLLCYSYEGNLLALKQALQLLQLNATDGKITLTKAQEVVEHSAQFTPFQWID
                     ALFEGKIQRAQRILYHLQNEEVQAVVLLRIVQKELMILLEITRNPTAVVSSEQSLFIG
                     NLRTEFDRLKIWQNRRPFYNQITQRLTYQKLYALIQQLAELERKVKQEFSDDIWQELE
                     RFSAQFT"
     gene            complement(54544..54729)
                     /gene="yacG"
                     /locus_tag="PXE92_000128"
     CDS             complement(54544..54729)
                     /gene="yacG"
                     /locus_tag="PXE92_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HDL5759423.1"
                     /translation="MPETIVNCPTCEKEVVWSKESKYRPFCSERCQIIDLGDWAAEKH
                     SIASEEAELFSEDLEKY"
     gene            complement(54711..55346)
                     /gene="coaE"
                     /locus_tag="PXE92_000129"
     CDS             complement(54711..55346)
                     /gene="coaE"
                     /locus_tag="PXE92_000129"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDL5759424.1"
                     /translation="MTYVVGLTGGIGSGKTTVSDLFSALGVEVIDADVVARQVVEPGT
                     PLLAKIVEHFGEEILTAEKALERTKLRQIVFNNEEEKTWLNNLLHPAIREEMVKKLQE
                     STACYVIWVVPLLIENKLTEYCDRILVVDVSPEIQLERATKRDNSKIETIKNIMAAQV
                     SREERLSYADDVIENNLPFEQGLLLIKEQVQALHYKYLALAKKEKECQKLL"
     gene            complement(55382..56038)
                     /locus_tag="PXE92_000130"
     CDS             complement(55382..56038)
                     /locus_tag="PXE92_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDL5759425.1"
                     /translation="MLILFSLFIAVWLKAEIPRFAIRVNRQIYQETTSLVNIGLTEQQ
                     FLAQSVLQPKQPRSANLFFLLFPLIMLCSESPIIGTIFILLCFLSLLDMCYYLTDIRY
                     LVLIFLLVLWESLADFQHQTFTFTLAFCLLIGLVSQLMFKKEAFGSGDMLLLVALSPL
                     FRLEKMLLLILTASLLGIGYYLAYWLMKKQKLAKLAFIPFISTAMLLVLMLESRGINY
                     "
     gene            complement(56041..57237)
                     /locus_tag="PXE92_000131"
     CDS             complement(56041..57237)
                     /locus_tag="PXE92_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDL5759426.1"
                     /translation="MTKIYEFHWQAQSRFGQKQRGKRLATNRDMLENLLLAQGYQHIR
                     ISRNFVLSANPKKEEVNSLLSQLALLVNSAMPLKQALSMLLQNCRNIRLYLWLNELIQ
                     HIESGYAFSQSLEKLGEFVTNQEIQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVK
                     KILFYPVIVLLISLALSIGLLVLIVPQFAQLYGSKDKTLPLITDILFTLSECLIEQGT
                     VLLGTLLLAVIFYLFFAKKSRLVAKWKMALWAKMPLFSRIIEQSRIIFFSQNIALMLN
                     AHIPLDVALRSFLSEKNDDPILQQEIGTMLNLLQQGYKFSQGINPNVFGAEMAQMLEV
                     GEKSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLIMGVIVGTIIVGLYLPIFD
                     MGALVE"
     gene            complement(57234..57686)
                     /locus_tag="PXE92_000132"
     CDS             complement(57234..57686)
                     /locus_tag="PXE92_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilB"
                     /protein_id="HDL5759427.1"
                     /translation="MEYSVTDLNSQRFIEISAEQWQKNCNEKQILLRYLAIPLQETEE
                     QLWLGIDDMQNLNACEIFAFIYHKQIEPVLISSDELKFLLNALSPEQSSRQSEIYEEN
                     TAYSLAHSEQVDRNDPIIQILENLFKFCLQHNASDIHFEPQKEKLLRQ"
     gene            complement(57707..58186)
                     /gene="ppdD"
                     /locus_tag="PXE92_000133"
     CDS             complement(57707..58186)
                     /gene="ppdD"
                     /locus_tag="PXE92_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HDL5759428.1"
                     /translation="MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNS
                     YTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSGGTNGIQANKTSSNTTKYLNSIA
                     VTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG"
     gene            58367..59746
                     /gene="radA"
                     /locus_tag="PXE92_000134"
     CDS             58367..59746
                     /gene="radA"
                     /locus_tag="PXE92_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDL5759429.1"
                     /translation="MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKE
                     AAKSDRFSGYAGETSGKVQTLSDISLQEVPRFSSGFNELDRVLGGGVVPGSAILIGGH
                     PGAGKSTLLLQVMCGLAQHLPTLYVTGEESLQQVAMRANHLGLPTANLKMLSETSVEH
                     ICNIADQEKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVG
                     HVTKDGTLAGPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGL
                     KEVKNPSAIFLSRSEEQTPGSSVMVLWEGTRPLLVEIQALVDHSMLANPRRVAVGLDH
                     NRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQD
                     LVIFGEVGLAGEIRPVTSGQERISEAAKHGFKRAIIPHGNVPKKAIKDMQVFTVKKLS
                     DALDILYNL"
     gene            complement(59801..60031)
                     /locus_tag="PXE92_000135"
     CDS             complement(59801..60031)
                     /locus_tag="PXE92_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
                     /protein_id="HDL5759430.1"
                     /translation="MDYVEILGYVAMILVACSFLLKDVIKLRVVNSLGCACFVVYGLL
                     IGSIPVTGLNALVVCINLYYISKGNRPTAAHS"
     gene            complement(60151..60645)
                     /gene="folA"
                     /locus_tag="PXE92_000136"
     CDS             complement(60151..60645)
                     /gene="folA"
                     /locus_tag="PXE92_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HDL5759431.1"
                     /translation="MKISIIVARTINKVIGKDNQMPWHLPVDLAWFRQNTLGKPVIMG
                     RKTYESIGRLLPKRPNIILSRSGFTVEGAYAVQSLEQAVELAKNFANTAEIMIIGGGE
                     LFKQALPLAERLYLTEIQADIEGDTFFEFDEQNWALVEEKWSEIDENNPFRCRFMCLE
                     RKSV"
     gene            60721..60876
                     /locus_tag="PXE92_000137"
     CDS             60721..60876
                     /locus_tag="PXE92_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl kinase"
                     /protein_id="HDL5759432.1"
                     /translation="MATLFLVTSEQIMSKTIVIKFGTSTLTHGTKSLSRPYMLELVKL
                     NYTNSIV"
     gene            60873..61841
                     /gene="proB"
                     /locus_tag="PXE92_000138"
     CDS             60873..61841
                     /gene="proB"
                     /locus_tag="PXE92_000138"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL5759433.1"
                     /translation="MIVVTSGAAAAGRDYLGHPELPKTLASKQMLAAVGQSQLIRVWE
                     NLFDIYNIHIGQMLLTRADLDDRERFLNARDTLDALLAQKIIPVINENDAVATEEFKV
                     GDNDNLSALVAILAQADQLYLLTDQEGLFSADPRSNPDAKLLSVVEKITPEIRQIAGG
                     SSTGLGTGGMSTKITAADIATRSGVETIIASGSRPNVLVDLANGQNIGSKFLVQSDRL
                     EGRKRWLFAAPQVGEIVVDFGAEQALLQHKSLLPVGVSAIKGEFTRGEVIKIFSQDGK
                     ALALGIARYSSEALLRIKGKKSKEIESLLGYEFGSVAVHSDEMVVY"
     gene            61841..62605
                     /locus_tag="PXE92_000139"
     CDS             61841..62605
                     /locus_tag="PXE92_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDL5759434.1"
                     /translation="MELGIDVLAILFAVATLAGFIDAIAGGGGLLTIPALMAAGLPPA
                     MALGTNKLQACGGSLSSSLYFIRKKAVNLKQIWLLILCTFLGSAAGTIFVQMINVDFL
                     KTLLPFLILIIGIYFLVSPKIGDEDRKQRISFTLFAFTAAVALGFYDGMFGPATGSFM
                     TLAFILLLGFNLSKAVAHAKVINFTSNFASLIFFTLGGAVMWKIGLIMMVGQFIGGTL
                     GAKMVMTKGKKLIRPMLVTMSFMMVGKMLYEQGIFN"
     gene            62608..63240
                     /gene="nth"
                     /locus_tag="PXE92_000140"
     CDS             62608..63240
                     /gene="nth"
                     /locus_tag="PXE92_000140"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDL5759435.1"
                     /translation="MNKAKRIEILTRLRNENPKPTTELNYSNPFELLIAVILSAQATD
                     KGVNKATDKLFPVANTPQAILDLGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG
                     EVPEDRDALEALAGVGRKTANVVMNTAFGHPTIAVDTHIFRVSNRTNFAPGKNVVQVE
                     EKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEFKEKTE"
     gene            63437..64687
                     /locus_tag="PXE92_000141"
     CDS             63437..64687
                     /locus_tag="PXE92_000141"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HDL5759436.1"
                     /translation="MDIYLVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGA
                     DFPVFLHPETKEEYALARQERKNGNGYNGFICDFSPNVTLEQDLIRRDLTINAIAQDE
                     NSTLFDPYGGVQDLENRLLRHVSPAFSEDPLRVLRVARFAARFHSFGFTIAPETLKLM
                     REMVQSGELKHLTAERVWLETQKAFETDNPHVYFDILRLIGALKVLFPELDRLFGVPQ
                     PPQHHPEIDSGKHTLMVLQQAKRLAKKAENPTALLFAALCHDLGKGLTPADILPHHYG
                     HEVKGIQPTRELANRLKIPTEIKDFALLVTEYHTHCHKMAELRPETVIKLFNSLDVWR
                     KPNRFFDFLFACEADARGRLGFEQRNYPQPELAKKYYQAAIEIDVQQVIQDGFEKQAI
                     REELNKRRVYAVRSIKLDSDLINH"
     gene            complement(64788..65723)
                     /locus_tag="PXE92_000142"
     CDS             complement(64788..65723)
                     /locus_tag="PXE92_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDT family transporter"
                     /protein_id="HDL5759437.1"
                     /translation="MSESKPFPITTGFFAMPLGLGALGLAWLNATPITPYATTIGNII
                     AGTSVILWVALLGCYVYRVFFCFEQIKAEFMHPVQCCLFSLVTMTTMISGDVLYVWDF
                     YLGELLIFLGVIVHLIFLVFIIGGLWKGTQFLPETLHPVHYLPPIAGSFTMASSLSLI
                     GYSEIASLFLGIGIISWLVYEPTMLQRIRLSPLFPIARPSLGIVLAPAFVGASAYFSM
                     GGELDLLAKMLWGYGFLQFCFILRNLKWIAENGFSMGFWAFSFGLAAMARGAIEFYQF
                     EPLSFIGLAGFTIANFGIGLLLIFTLKLWLQQSRA"
     gene            complement(65852..66046)
                     /gene="iscX"
                     /locus_tag="PXE92_000143"
     CDS             complement(65852..66046)
                     /gene="iscX"
                     /locus_tag="PXE92_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HDL5759438.1"
                     /translation="MKWTDTRMIAENLYDMNPDLDPTTVRFTDMHKWICEMEDFDDDP
                     EASNEHILEAILTIWLEEYE"
     gene            complement(66046..66387)
                     /gene="fdx"
                     /locus_tag="PXE92_000144"
     CDS             complement(66046..66387)
                     /gene="fdx"
                     /locus_tag="PXE92_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HDL5759439.1"
                     /translation="MPKIVFLPHEEFCPEGMVVEAKAGDNLLEVAHEAGVEIHHACDC
                     SCACTTCHVVIREGFDSLNDTSDQEEDMLDKAWGLEIDSRLSCQCIVGEEDLVVEIPK
                     YNLNHANEAAH"
     gene            complement(66406..66771)
                     /locus_tag="PXE92_000145"
     CDS             complement(66406..66771)
                     /locus_tag="PXE92_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 51 family protein"
                     /protein_id="HDL5759440.1"
                     /translation="MSNYVKTEISEQFRTVAVEFDLEDNRIFELGERINTEYDVAYMN
                     GYNWAAFLRAYLSIYRPSLLELLEEDPDVGCYYVTYPLSEKSKEKARELKKIIVYLVE
                     NEEEILNFIGEHLDNIEWD"
     gene            complement(66781..68634)
                     /gene="hscA"
                     /locus_tag="PXE92_000146"
     CDS             complement(66781..68634)
                     /gene="hscA"
                     /locus_tag="PXE92_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HDL5759441.1"
                     /translation="MALLQISEPGQTAAPHQHKLAVGIDLGTTNSLVATVRSGQTQVL
                     LDEQERALVPSVVHYAETEKTVGIEAFAKAALDPKNTVISAKRLIGRSLADVQQRYQN
                     LPYQFVASENGLPLIQTAQGNKSPIEVSADILSHLAQFAEKRLAGELSGVVITVPAYF
                     DDAQRQSTKDAARLAGLNVLRLLNEPTAAAIAYGLESGQEGVIAVYDLGGGTFDLSIL
                     RLRKGVFEVLATAGDTALGGDDFDHLLAEWIAEQANYKPQTASEQRELLTLATQTKVA
                     LSQAVEFEVKFANWTGVVSRSQFNELIQPLVKRSLMTCRRALKDAGVEAEEVREVVMV
                     GGSTRVPFVREQVGEFFGKTPLTSIDPDKVVAIGAAVQADILVGNKPDSDMLLLDVVP
                     LSLGIETMGGLVEKIIPRNTTIPVARAQEFTTGKDGQTAMTIHVLQGERELVEDCRSL
                     GKITLRGIPAMAAGVAQVRVTYQVDADGLLNVTAMEKSTKVQASIQIKPSYGLTDEEV
                     TQMIKSSMANAKEDMEARQLVEQRVEADRVIDSVVTALKEDGSAVLSVEEFQAIEAQL
                     ARLIELKEGTDRFAIQQGIKEVDLATQEFAARRMNLSIQKALAGKKMDDLA"
BASE COUNT        20754 a        14753 c        13661 g        19545 t
ORIGIN      
        1 gttaaatttt gtcaaaactt tgcaaatcaa taaaaaacat tgatttttgc actaaaatcc
       61 tgtatttatt cacaatcttt ataacatcat ttttaggagc aaacacaatg caaaatgtag
      121 gttttatcgg ttggcgtggt atggtcggtt cggtcttaat ggatcgtatg gttgaagaaa
      181 ataacttcgc caatatcaac cctgtttttt tcactacttc acaagcgggt caaaaagccc
      241 ctgtttttgg cggaaaagat gccggcgaat taaaaaacgc ctttgacatt gaagaattaa
      301 aaaaattaga cattatcgta acttgccaag gtggtgatta tacaaatgaa gtctatccaa
      361 aattaaaaga aaccggttgg aacggctatt ggattgacgc ggcttctgca ttacgtatga
      421 aagacgatgc tattatcgta ttagacccgg tgaaccaaca tgtgatttca gaaggcttaa
      481 aaaacggcat taaaacattt gtaggcggaa actgtaccgt aagcctaatg ctaatggcta
      541 tcggtggttt atttgagaaa gatttggtcg agtgggtttc tgtagcaact taccaagccg
      601 cttccggtgc cggtgcgaaa aatatgcgtg aattgctttc tcaaatgggt gaattagaag
      661 atagcgtaaa agctgaatta gcaaatcctg cctcttctat tttagatatt gaacgtaaag
      721 ttacggctaa aatgcgtgcg gaagacttcc caaccgagaa cttcggtgcg gcattgggcg
      781 gtagcttaat tccttggatt gataaattat taccggaaac cgggcaaact aaagaagagt
      841 ggaaaggtta tgcagaaact aataaaattt taggtttaag cgataaccca attccagttg
      901 atggtttatg cgtgcgtatt ggagcattac gctgccacag ccaagcattc acaattaagc
      961 tgaaaaaaga tattccgtta gcggaaatcg agcaaattat tgctgcccac aatgaatggg
     1021 tgaaagtaat tccaaacgac aaagaaacca cattgcgtga attgaccccg gcgaaagtga
     1081 ccggtacatt gagcgtgccg gttggtcgct tgcgtaaatt agcgatgggt ggagaatact
     1141 tagctgcatt taccgtaggt gaccaattat tatggggtgc agcagagcct gttcgccgca
     1201 ttttagttca attaacccaa taattcgcca ctgctctata caagcggttg gattttgcaa
     1261 attttttgca gaatttgacc gcttgtttgt tataattatt ttcatctttt ttcactttta
     1321 gatgaataaa ttatgaaacc gatttttctt gaaatccgcc atttgcggac attaatcgca
     1381 ttaaaagaga gcggtagcgt atctcttgca gcaaagcgtg tccatttaac acaatccgca
     1441 ctttcacacc aaataaaatt actggaagaa cagtatgatc ttacgctatt tgagcgaaaa
     1501 agctccccta ttcgctttac accagctggc gaacgtttaa ttaagttggc ctacgatatt
     1561 ttgcccaaag tcattgaggc tgaattagat ttagcccgag tgaaacaagg agaagtcgga
     1621 gaggtacgtg ttgcagtaga atgccatacc tgttttgatt ggctaatgcc ggcaatggat
     1681 actttccgtc aacattggcc tctagttgaa ttagatatcg tatcgggttt ccatactgat
     1741 acggttggtt tgctattaag ccatcgtgca gatctggcaa ttgtcgctga agaggaagat
     1801 agtgctggta ttatatacaa acctctcttt tcatatgaaa tggtagctat ttgctctaaa
     1861 gatcaccctc ttgccacaaa agatgtatgg gaagctgaag attttaaaga tgagacatta
     1921 attacctatc cagtacctga tgatatgcta gatttactgc gaaaaatatt aggccctgct
     1981 ggcatcaaag ttactcggcg taatagtgag ttaactattg ctattattca gctagtagca
     2041 agtcggcgag gcattgctgc actaccttat tgggcggtta aaccatattt agataggggg
     2101 tatgtggtgg caagaaaaat aactcagcaa ggactatata gcacccttta tggcgctatt
     2161 cgagaagccg atgctaccct agcctactta gatgatttcc atgataccgt aaaatcgcag
     2221 agttttgcga ctcttcccgg attgatggta ttagagtaaa aaattaacaa tttatgttag
     2281 cctaagcaca aaaaagcgaa cttatgttcg cttttttatt taaatttaat ttaacgcccg
     2341 taaaatatca tcaacacgtt cttttgcatc accaaatagc atttgggtat tttctttaaa
     2401 gaacagtggg ttttgcacac cggcgtagcc tactgccatt gaacgtttga acacgataac
     2461 attttgtgct ttccatactt caagcaccgg cattccagca atagggcttg atgggtcgtc
     2521 taatgcagca gggtttacgg tatcgtttgc accgattacc aataccacat cggtttcttc
     2581 aaaatcgtca ttgatttcgt ccatctccag cactacatca taaggtactt tcgcttccgc
     2641 caataatacg ttcatatgcc ccggtaaacg ccctgccaca gggtgaatac caaaacgcac
     2701 attcacgcct ttttcacgca attttgcggt gatttccgct accggatatt gtgcttgagc
     2761 cactgccata ccataacccg gcgtgatgat cacagagctt gcatttttca gcatttctgc
     2821 cacttcttcg gctttcgttt cacggtgttc accgtattct tcatcacctt tgccagactg
     2881 aacttcattg ccaaaaccac cggcaatcac gctaatgaat gagcggttca ttgctttaca
     2941 cataatataa gaaaggatag cacctgatga tcccactaat gcaccggtta cgattaataa
     3001 atcgttgctt agcataaagc ctgccgctgc ggctgcccaa cctgaataag aattcagcat
     3061 tgaaactacc accggcatat ccgccccacc aatagaagaa actaagtgcc agccgaagac
     3121 taacgcaata attgtcataa tcagcacagg gaagatattg tgcggattat ttaaaaacac
     3181 gatcatcaaa aaaacagaaa cgataatggc tgccaaattc catttgtgtt tatgtggaat
     3241 attcagtgct gcagaagaga ctttacgacc aaataattta ccgcttagtt taccaaaggc
     3301 aaccaatgaa ccggagaagg ttaccgcacc aatgaaaata cctaagaaca cttccacatt
     3361 gtggatattg gcaagagtgg cttgttccgc taaaaatgcc gcttgtgcag tttcatctaa
     3421 atttgcaggc attaatgcat tggtatgaag tccgtagctg ttaaaaccaa ccaataccgc
     3481 tgctaaaccg acaaagctgt gtagaattgc cactaattca ggcatttcgg tcatttctac
     3541 ttttagggct tttttcaccc cgatgaatcc accgattgcc attgcgatta agatccaaat
     3601 cgtgccatgt gattgcgggc cgaaaatggt tgccactaaa gcaatcgcca tacccacaat
     3661 cccataccaa caacctgctt tggcggtttc gtgtttagaa agaccggcta agctcataat
     3721 aaagagaata gctgcaataa tgtacgcagc agtcacaaat ccaaaagaca tagtttcgtt
     3781 tctccttaac cttttctaaa cattgcaagc atacgttgcg ttactttaaa gccaccaaaa
     3841 atattgatgc tggcaaccaa aatcgcaata aatgccaaaa tatcaataaa gaaattaccg
     3901 gtcggttggg caatttgtaa taccgcacct acgatgataa tccctgaaat cgcatttgtt
     3961 accgccatta atggggtatg tagtgcgtgg ctgacgttcc aaaccacata ataccctacc
     4021 acacaagcga gaacgaatac ggtaaaatgc gataaaaacg ctgccggagc cacagatgca
     4081 agccatagga acagcacacc tgctgctgcc atcacgccat atttcactcg agggtctgca
     4141 ggtttttcct cttttttgac cgcttgtggt gcggctgctt gtttttgcag ttgggcagat
     4201 acttgaatcg gcggagccgg ccaagttaat tcgccgtcac gcaccaccgt tacgccacgc
     4261 aacactacat catcaaaatt aatctcaatt tgaccatctt tatttggtgc taacagtttg
     4321 agtaaattca ccaagttagt accataaagt tgcgaagatt gcgttggtaa acgtgcagga
     4381 aaatcggtat agccaatcac tttcacttga ttatcggtca ccacaatctc gccggctttg
     4441 gtgtattcac agttaccacc ggttgcagcg gctaaatcaa caatcactga acccggtttc
     4501 attgaatcaa ccatctcttt agtgattaaa cgaggagcag gtttgcccgg aatggcagcg
     4561 gtggtaataa taatatccac ctctttggct tgctcggcat ataacgccat tgcacgacgg
     4621 ttaaactctt ccgacatcac tttcgcatag ccgtcacctg agccaccttc ttcttcaaaa
     4681 tcaatttcga ggaaatcagc ccccattgat ttaacttgct cttttacttc aggacgagag
     4741 tcaaaggcac gcacaatcgc ccccaggcta tttgccgccc cgattgcagc caagccagca
     4801 acaccggctc caattaccaa cacttttgcc ggtggtactt tacctgctgc ggtaatttgc
     4861 ccagtaaaga agctaccaaa agcgtttgcc gcttcgatca ccgcacggta acccgaaata
     4921 tttgccatcg aacttaaagc atcgagagct tgggcacggg aaatacgagg cacagcgtcc
     4981 attgccaaca cattaatttt cttagactgc aatttttcca tcaattgtgg attttgtgcc
     5041 ggccaaataa agctgactaa ggttacccct tctttgatta actcaatttc agcttctgtc
     5101 ggcgcattca ctttaaaaat aatgtctgca ttccaaactt cttgttgtgt gccgatattt
     5161 gcacctgcat ttaaaaatgt attatcttca aaactggctt taaaacctgc gtcttgttcc
     5221 acaagtacgt caaagccaag ttttttgatc tgctcaacgg tttttggcgt tgccgccact
     5281 cgagtttcac cgtctaacag ctctcttggt acaccaataa gcataaagac tcctgtatgg
     5341 ttgttgtgat taaaaacgct ctaaatgtac cactaaataa aacaaatagg taaaaaatta
     5401 tgcccaatta aaccgattat ttcccatttt ttcaaatttt aagcaggcta aatttttgct
     5461 acactattaa caggctaaat ttaacaaaaa agaaacaaaa ccaatgcaga ttctcaacca
     5521 aattcagatc attcttgttg aaacttcact cccggcaaat atcggttccg cagcccgagc
     5581 aatgaaaacg atgggcttaa cccatttgcg attagtcgcc ccaaaacaac cgcttgatga
     5641 acaagccgaa gcccttgctg ctggggcaaa agatgtgttg gataacgctc aatgctacgc
     5701 cactttcgat gaagccattg ccgattgcca actggtgatc ggcaccagtg ccagacttcg
     5761 ccatttgcaa aataccctga ttgaaccaag agactgtggt gaattagtgg taaatcgaac
     5821 caatcttggc aaagtggcga ttgtatttgg acgtgagcga gtggggctaa ccaacgaaga
     5881 attattgaaa tgccagtacc atttgaattt cccaaccaat cctgattatg gttctctgaa
     5941 tttggcaatg gcagtacagc tcgcaagtta tgaaatccga atggcttatt tgcaaaattc
     6001 tggcgaaaaa caaccgcttg cagcagataa ggattaccca accgctcaag ccttagagca
     6061 tttctttgct cacaccgaac gcttatatac cgaattaggc tttatccgca atgattcagt
     6121 gatgctaaaa ctccgccgtt tataccaacg tgccgaactg gaaactaatg agctgaattt
     6181 actgagggga atgctcacgg cggtggagaa ggcaaattga caagcggtta atttttagta
     6241 gaaatttgca aaatccctga ctaaaacaaa aacggtaaga ttactcgttt tctctaaatc
     6301 attattttaa attcaacagt ttatttgaac tttcaataat actgcccatt gtagaatcgc
     6361 cttttaattg ttcttcgctc atcggttcga tatgccaaat atttttcgca taatccatca
     6421 ccgagcggtc tgaggagaaa tagcccatat tggcaatatt gatgatggct gaacgtgtcc
     6481 aagctttctt gttacgatag gcttgagcca ctttttcttg agcctccaca tagctacgat
     6541 aatcggcaca ggcttggtag tagtcacctg aatttaagat caaatcttga tagcgatacg
     6601 gatcttccgg tgagaattta ccgtttagaa tttgtgaaat tgcctcattc aattcgctgt
     6661 ctttttcgta gtagtgatac ggtgagtaac cgttgtggcg aagctcttcc acctgctcta
     6721 cttcattacc gaaaataaag atgttctctt taccaacgtg atctaaaatt tcgacattcg
     6781 caccgtctaa tgtaccaatg gttaaagcac cattgagggc aaatttcata ttagaggttc
     6841 cggaggcctc tgtacccgct aaggaaattt gctctgaaac atcagctgcc ggaataatca
     6901 tttgtgctaa tgaaacaccg tagttcggaa taaacaccac cttaattaaa tcattaatgc
     6961 gagggtcatt attcaccaca tttgccacat cattaatcaa acgaatcact tttttcgccg
     7021 cataataagc acttgccgct ttccctgcga agataaacac acgaggtgtc caatcagcag
     7081 tcgggttttt caagatgcgg ttataaagcg tgatgatatg caacacgttc atttgctggc
     7141 gtttatactt gtgaatacgc ttaacttgta catcaaaaat cgcttcagga ttaagtttaa
     7201 ttccctgagt ttcttcgaca tatttggcta agcgacgttt gttttctact ttcaccgctg
     7261 ccacctgtgc ttgcacatca gcatcatcaa caaacacgtt gaatttttcc aattcactta
     7321 aatcagtcag ccacttattg ccgatacatt tatctaaaat attagcaagc cctgggttgg
     7381 caattttgat ccagcggcga ggtgtcaccc cattagtcac attagtaaaa cgatttgggt
     7441 aaatacgggc aaaatcggca aaaatagatt caaccattaa atccgagtga attttcgcca
     7501 caccatttac tttcgctgag gcgactaccg caagccacgc catacgcaca cggcgatcgc
     7561 cttgttcatc aattaaggaa acacgagaaa tcaaatcgtg atcttccggg aattggctac
     7621 gcacttcctc taagaaatat tcgttaatgt cgaaaataat ctctaaatgg cgtggtagca
     7681 cacgggctaa catttctacc ggccaagttt ctaacgcttc actcatcaaa gtgtgattgg
     7741 tgtagaagaa aattttacga gtcatcgccc acgcttgttc ccagccatag cctttttcgt
     7801 caattaaaat acgcattaac tcaggcaccg caagggttgg gtgtgtgtca tttaagtgag
     7861 ttgccacttt gtcggctaaa ttcacacaag agccgaactc cgcttcgtgg cggcggataa
     7921 tatcttgtac agatgccgag caaaggaaat actcttggcg taagcgtaat tcacgaccgt
     7981 tataggtaga atcgtccgga taaagcacac gagagacgtt ttccgagctg ttttgtttaa
     8041 ccattgctgc aaaataatcg ccacggttaa aatcagataa gccaaaccct ctacccgatg
     8101 cgtgtgcaga ccataaacgt aagctgttag ttgaggtggt ctcaaagccc gggatcagtt
     8161 ggtcgtgagc ttgagcggta atttcttctt ccggctgcca tactactttt ttgccctcac
     8221 gccaagtttt accgccaaag cgtaccggga aacgcttact tgaacgtaga tatggccaca
     8281 caaattcatt ctctaaccat tcatcaggtt gctcaatttg ctccccgttg cggatttctt
     8341 ggcggaacat accgtattca tattgaatac cgtagccgat tgccggaatt ttcattgtgg
     8401 caaggctgtc catatagcag gcggctaaac gccctaagcc accgttacct aagcccggac
     8461 gccctcttca ttgataatct cttccagatc ttgccctaac tcttttaacg cagcgccaat
     8521 aagctcatac acaccttcag aaatcattgc gttactgaac gtacgcccca ttaaaaattc
     8581 cattgaaagg taataaacac ggcggctacc atttgcaacc tggctacggc gggtttgtaa
     8641 ccaatcttcg gtagataaat cacgcactac acgtaaggtt gcattgagcc agttacgctt
     8701 actggcatca cggggttcga cccctaaagc gaacaccatt ttgtgcaaaa tcgcattttt
     8761 aacatttttg atcatttctg ggcttaatga ctgcctgctc attgagtaaa ttctcctaat
     8821 ttttaatatt gcaagcggtc gtttttacaa aaaaatccgc aaattcgacc gcttgaaatg
     8881 atgttgtgaa tacaaattaa ataatttcgt ggtataaatt ttggtactgt tctgccactt
     8941 ttgcccaacc aaaatcttga gcaagggcat tctggcgaac gctcgaccac aatttttgtt
     9001 tctgccataa gctgattgcc cgcatagctg cctctaaaaa cgcaggtgca tctgggtaat
     9061 caaatacaaa tccggtggca ctgcggtttt caatgctctc tttatggcta tctaccaccg
     9121 tatcagctaa gccaccggta cggcgaacca gcggtaaagt gccatatttc agcccataaa
     9181 gttgagttaa tccgcacggc tcaaaacggc ttggtactag aatcagatca ccacctgcaa
     9241 taatttggtg cgataaagcc tcgtcataac cgattttcac cccaatttgg ttcgggtatt
     9301 tgtgttggaa ataacgtagc gcattttcta aatctggcga tccacttccc aatacaataa
     9361 tctgtacctt atgttgcatt aaggtatcta tattggcgag taagaaatct gcccccttct
     9421 gctcagttaa acgagtcacc attaccatca ataatgcttc tttgtcttct ggcaaaccaa
     9481 aaattcgttg gagttccgct ttatttttgg ctttaccgtg catatagttc gcacgataat
     9541 tcaccacaat atgtgtatcc gtttccggat tccacacctc agcatcgacc ccgtttaaaa
     9601 tgccacgcaa tctaccttga tattgacggg ttgccagtaa accatgcaag cctgcaccgg
     9661 caatttcctc agtaatttca cgagcatagg tcgggctaac ggtagtaatg cgatcagcaa
     9721 aatacaaacc tgctttgagg taagaaattt caccgtaaaa ttctaagcct tcggcgtgga
     9781 aaaattccca aggtaagcca agctctgcta aatggaaggc attaaagcgc ccgatatagg
     9841 caatattatg aatagtgaag agcgttttta cattgcttcc ccaactttta agatatgcac
     9901 aagcaagccc tgcttgccaa tcgtgtgcgt gtaaaacttg agcggttccc caccaatgat
     9961 ccaaaccttg ggctaattgc gccccaatgt aacctaataa agcaaagcgt ttatagttat
    10021 ccggatagtc ttgataattg ctgtcgtggt aagggttacc atcacgcata aataaatgag
    10081 gcgcatcgat aacgtaaacg cctaagccat taaaataagc aaatcgaaca gagactgttc
    10141 cggcaaaagt gccgatagta gcaacttcta ccgtttcccc taaagtttgc gcgactttcg
    10201 ggtaataagg aattaacact ctgacatcat taccagcttg ctgttgcgca aatggcaatg
    10261 cccccattac atcagctaaa ccgcctgttt taattaaagg gtacatttca gagcaaatat
    10321 gtaaaacttt catttttaac cgttttctat gtgtaaaata gttgaaaaat aagaccgctt
    10381 gaagcgcttt aatcataaca atacttcgag cttgcgacct caaatgacaa actcgaagca
    10441 ttatatcatc tcttactaaa ttgtatattt aatatccgaa ttagcttctt ttcccgctaa
    10501 tttatctaac attgactgtg tcactaatac aatgccattt ttgctgacac gaaaacgttt
    10561 cgcatcttct tcggcattta caccaatttc taagccatca ggaattacac aatgtctgtc
    10621 aatcacagcg cgcttaatta cgcaattttt accgatagtc acctgcggta aaatcactgt
    10681 gtgttcaatc accgactccg cttcaacgtg aacacggtta aataagaccg aattactgat
    10741 ttccgcatcg gtaatcacac aaccacccgc aatcagtgag ttatctaggg ttctggcacg
    10801 cgcacgatta tagaaaaaac gtgccggtgc agtttgttgc ggacgaccgt gaatcggcca
    10861 agattcatca tataaatcta attccggatc ttcagaaact aaatccatat gggcagccca
    10921 gtagctgtca atcgtaccga catctcgcca gtaaattgcc ccactggcat tacgcccttt
    10981 acaagaacgt tcaaatgggt gggcatatag cacaccttgc tctactgctt ttggaataat
    11041 atctttaccg aaatcatgtg aggttcccgg tgtagaggct tctttttcca gcatttcata
    11101 tagataatct gcattaaata cataaatccc cattgatgct agcgaggaat ccggttttcc
    11161 cggcattgca ggtggatcag ctggtttttc gacgaactct ttcactttca gcttttcatt
    11221 caccgccatt accccaaact ctgttgcttg cgagcgaggc acttcgatac aacctacagt
    11281 acattttgca ccttgatcga cgtgatcttt cagcatttga gtgtagtcca ttttatagat
    11341 atgatcccct gctaaaatca ccacatattt tggtctatag tgcgatttca tcatcgccat
    11401 attttgatac accgcatccg ctgtgccacg ataccaagtg ttttcatcta gctgttggcg
    11461 tgccggtaac atatcaatat attggttacg ttcataaggt aaaaatgacc aaccacgttg
    11521 taaatggcgc aacaaagagt gtgctgcata ttgggtaatc accccgattt ttaataaatt
    11581 cgagttaata caatttgata acgcaaaatc aataatacgg cggctaccac cgaaatagac
    11641 tgccggtttt gcacgtttat cggttaattc gtataggcga gaacctcgtc ctcctgcaag
    11701 aattaatact aaggtatcgt tggttaaatc ttgtcttgca acaagagccg ttgattcttg
    11761 gttaagcata ttgtgtctcc aatttattag cgaacattac atcacttttt tgaagtacgc
    11821 atacacccat attattgagc gtaaccgctt gcgtgtctgt catcaaaata ccttgagcct
    11881 gctccaacac aactttccag ttgccttgtg gcagtaaaaa cggttgaggt tgtcgattag
    11941 cattgaataa aagcagccat tcttcctgta ataaaacgac aagcccatta tgttgattat
    12001 gccaatcgtc aatattcatt agctgagcag aaggattcaa ccattgtacc gaatcctctt
    12061 gccaccaatt attctgcttg gaaagcaaag cgattttttt acgcaaccgg attaaactac
    12121 gaacataatc cagccgtgtg tgattcatat tttcccaatc tagccaagtg atctcattat
    12181 cttggcaata actattattg ttaccttgtt gactatgtcc gatttcatca ccggctaaaa
    12241 gcattggaac accagccgat aaaaagagcg tagcaagcaa actacaagcg gtgatttctc
    12301 tctgtttttt taccaattca tctgctgtct gcccttcaac accgtggtta ttgctgtagt
    12361 tactattatg cccgtctcgg ttttgttcac catttgccca attatgtttt tgctgatagc
    12421 tggtgagatc ttgtaacgta aacccatcgt gtgccgtaat aaaattgata ctttttgaaa
    12481 cggaatattt agtaaacaca tcatcacttc ctgccaatcg ccgtgccaaa agcccccaat
    12541 caccttggtt ttgtaaccaa aaacggcgta tatcatcacg ataacaatca ttccactgat
    12601 aaaaaggctc agggaattgc cctaattgat aaccttctac accaatatcc caaggctcag
    12661 caatcaactt aatatgtgtt aatttagaat ggcttttaag tgctgtgaaa aaatctgctt
    12721 tttcagaaaa actcggtgtt ctacctagaa ttgaggcaag atcaaagcgg aatccatcaa
    12781 tatggcactc ctccacccaa tagattaagc aatcgattgc ccagcagagt atataaggat
    12841 tgctcaaatt taaggtatta ccacagccag tccaattttc gtattcgccc tgtttatcta
    12901 gccaataagc tgtattgtca atgcctctaa aacttagcat cggcccgttt ttatcactct
    12961 cagctgtgtg gttaaacaca atatccataa tcacttcgat atgtgcttga tgtaatgttt
    13021 ttacgagctg tttaaactct ttaagaggat tttgcttatc tgctgctaaa ttcggatcaa
    13081 tagcaaaatt acctaataca ttatagcccc aataattcac aagcccttgt ttctgcaaat
    13141 gggtttcatc aatatggtaa gtaacgggta gaagttctac tgcggtgatt cctaaggttt
    13201 ttaaatagtc tatcgaaaca gggtgagcca aaccggcaaa agtgcctcga atgtcgcttg
    13261 gaatctgaaa gttccgctga ctaaaacctt tcacctgcat ttcataaata atagtctctg
    13321 cccaaggagt gaataactgg ctatcatttt cccaatcaaa atgctcatca atcacgatag
    13381 acttaggtgc aagagaggca ttatcccgtt catcgttcca tttataccaa gcggctgcct
    13441 ctgcactact taaatccggc ttcccttcaa tcgctttagc gtaaggatca gtcaataatt
    13501 tttgcggatt aaataacaaa ccggcttgtt catcttgtat gcctttcacc ctgtagccat
    13561 attttgtccc tgcttgtaca cctgctacaa aaatgtgcca agtatctccg gaagaaaaca
    13621 tcggaatacg ggtttcgtgg tgattttcat caaaaagaca taactcaata gcggttgcat
    13681 tttgcgaaac aatggcaaaa tttgtgccaa attcacccgc ttgtctatca agtttattgc
    13741 ctaaaggaaa aggcttacct ctaaaatagt gcatattatt ttttatgttt ctttaagtta
    13801 tgttttgttt tgttttgttt ttttgtctgc ggctcttttg aggaagatag tcgatagcgg
    13861 tggcaaagta atgctcaagg agtaggcttt accgtgcgat gcaattaact cgctggcaaa
    13921 tcggtttgca ttgctgacat tactaccgca ataacaagct aaatcagaat tgagaatttc
    13981 ctgatattct gccaattcat tcaccccaaa acggtaattt tcacgcacaa tcggggtgaa
    14041 attactcacc acaatcaccg aatcgccatt tttggcttta cgctcaaaag caaacaccga
    14101 attatcgtga tcgtccacca ctaaccactc aaaaccttca ggattgtaat cttgctcaaa
    14161 cagtgcaggg gtttgggtgt ataaatggtt aagggctttt acccaaccca atacgccctt
    14221 atgccattcg cccccttctt ccccgagtaa ataccaatct aagctctcgg caaaattcca
    14281 ctctttacct tgagcaaact cgttgcccat aaagagcaat tttttgcccg gatagcccca
    14341 catatagcca taataggctc gtaagttcgc aaatttttgc cagcaatccc ccggcatttt
    14401 attcagcaat gaacctttgc cgtgaacaac ttcatcgtgt gaaagcggta acacaaactg
    14461 ttcgctgtat tggtaggtca taccaaaagt cattaaattg tggtgataac ggcggtaaat
    14521 tggatctttt tgcatatagc gtaaagtgtc gttcatccag cccatattcc atttataatt
    14581 aaagcccaaa ccgcctcttt cagttgagtg agacactccg gcaaaagaag tggactcctc
    14641 tgcaatgctc gcaccgcctt ggctttcgtc tctcaaaata ttattggtgt ggcgtaagaa
    14701 gtcgattgcc tctaagttct cacgtccgcc atatttattt ggaatccact cgccgtctga
    14761 acgtgagtaa tcacgataaa tcattgacgc caccgcatcc acccgcaacg catcaatccc
    14821 aaaacgctca atccaataaa gtgcattacc agacaaataa ttgctcacct catttctgcc
    14881 gtagctaaaa attaaggtat tccaatcttt gtggtagccc tctttcggat cggaatgttc
    14941 gtataaatgc gttccatcaa aataaaccaa gccgtgttca tctaccggaa aatgccccac
    15001 tacccagtca agaatcacac caatgccttt atcgtgagct ttttggataa agtaactcaa
    15061 gccctcaggc gtaccaaaac ggctggttgg cgaataaata ccggtggttt gataacccca
    15121 agagccatca aacggaaatt cggaaatagg cagcaattca atatgggtaa agcccatatc
    15181 tttcacataa ggaatgagtt catcggcaag ctcttcatag ctaagccaat aattgttttc
    15241 aatgttgcgt cgccaagagc ctaaatgcac ttcataaatg gaaatcggtt tatcgggagc
    15301 attcgcatta cggcaggttt tctcggctgg cacaatgctt ggcaagccgg aaacaataga
    15361 tgcggtttct gggcggaatt gggaggcaaa ggcgtaaggg tcggatttca accgtagcac
    15421 gccgtttcga tccaacactt caaatttata gcactcccct tttttcacat tcggcaggaa
    15481 aatatcccaa ataccggaat cggggtggaa tcgcattgaa tgtaccaagc cgttccagtg
    15541 gttgaaatcc ccaaccacgg aaacccgctg agcgttcggc gcccagacgc taaaatgcac
    15601 acccccaact tcattttgtg tgactaaatg tgcgcctaat ttttcgtacg ggcgaagttg
    15661 ttttccttcc gcaaacaacc aattatcaag ctcttgaata tgggttttaa aacggtaagg
    15721 gtcttctata tccaccgttg aatcagggta ttccaccaac aagcggtaag aaaaatctgt
    15781 ttttttacca atcagctctg caataaaaaa gcctctatca tcaattttta gcattgatga
    15841 cacaggcttt ccgtttaaat cgatcacttg gcaagctatg gcagaaggaa gaaataccct
    15901 aataataacg ccgttattgc tagggtgaat acctaggtag gagaaaggat cattacaaga
    15961 acccgaagaa agtcgctcaa caaaaaaagc atctttttca gaataagtat agtcttgcat
    16021 cggcactcct tgcttaaagc gtttaatact taaatttcaa tagttctcac tctatcacta
    16081 aatagaaata aaagaagtgg atttacgcca ttttttgagc taaatcacaa aataaaatcg
    16141 ttttaatctt tagtttaaat catcaaacct taaattttgt gacatagatc acattttgaa
    16201 acatttttat ggatattttt agttggctat aacggtttag caaaatatag agtaaactaa
    16261 ccataacatt acagtttaaa aatcaacttt aaatccaagg agctaaaatg cttaatttat
    16321 cggcaaaaaa catccgttta aatggttcag caagcaacaa agaagaagtt atccgttttg
    16381 ttgccgccga attagtcgcc aagggcaatg tagcagccgg ctatgaagtc ggtatgctta
    16441 atcgtgaaac ccaaacctct acttttttag gtaacggaat tgctattccc cacggcacgc
    16501 ttgatacccg tgatttagtc aaagaaaccg gcgtgcaaat tatccaactt ccgcaaggcg
    16561 tggaatgggg cgaaggcaac actgcttatg tagttatcgg gattgcggct aaatcggacg
    16621 aacacttaac cttactccgt caactcacca ctgtattaag tgatgaagag gctgctgcca
    16681 cattagcgaa aacgcaaaat ttagatgaat ttattgccgt attaagcggt aagaaaaacc
    16741 ttcctgcctt atctcaagag ctgatttctc tgaatatcga atcttcaagc cctatcactt
    16801 tatcagccat taacgccgca aaactacaag agcaaggcta tgtttcccaa gcattcatca
    16861 gcgatgtggt tgccaacaaa gcgttacatt taggcaataa tctatttgtg gtggattccg
    16921 ccaaaggcaa ccaagctaac ggtatcgcta ttgcccgtaa tacgcaaggt caaaccctac
    16981 taactgtggc agaaaccgac aatgctctac agccactatt aactcaatta ttaaaaccag
    17041 aagtaagaag ccagtttgct catttctctg cggagcaaat gcttggttta ttaaaaggcg
    17101 aaagcgtagc ttcaacccct gtaaccaatg tcgaagcgag tggcaaccaa gtggttggca
    17161 cattcaccat tcgtaacgac aacggcttac acgcccgccc ggctgcggtg ttagtacaaa
    17221 cggtgaaacc gttctcctca aaaatcagcg ttgaaaattt agaccgcaac actgcaccgg
    17281 caagtgcgaa aagtgcaatg aaagtagtag cactaggggc aagccaaggg catcgtttac
    17341 gctttgtggc agagggagaa gacgcccaac aagcgattga ggcattacaa caagcaatta
    17401 ttaacggctt aggcgaaagt gtttcattcg taccggcggt ggcagatacg attgaaagca
    17461 ttgctgtttc agcaattcct gcggaagaaa ctgcgactgc tgtcgatgcc aatacgaaag
    17521 aagcaacttt tgtaattaaa aacgaacacg gtttacacgc tcgcccaagt gcggtgttgg
    17581 tgaatgaagt gaaaaaattc aacgccaaaa ttgaagtgca aaatgttgat aaaaattcac
    17641 cgcttgtaag tgccaaaagc ttaatgaaaa ttgttgccct tggcgtaacc aaaggcacga
    17701 cgctacgctt tgtggcaagc ggtgatgatg ccgaagtagc acttgcggca atcggtgctg
    17761 cgattgaagc aggtttaggc gaataagcga ggaatcatta tgcgtattgc aaccgttacc
    17821 ctcaaccctg cctttgattt agtcggcaaa cttcaacgta ttgaaatcgg cgaagtgaac
    17881 accgtagaaa cccttggttt ataccctgcc ggcaaaggta ttaacgttgc taaagtttta
    17941 gctgacttag gcacaaaact ttcggttacc ggctttttag gcgaagaaaa tcaaggcgat
    18001 ttcgtaaatg cctttaaaca caatgatttg gctgatgaat tttaccgtat taacggtaaa
    18061 acccgcatta atgtcaaaat cactgaaacc gaggctgatg taactgatct gaactttctc
    18121 ggctttgaaa tttcggaaag cgattgggaa aaattcgtca cattatctca tcagtgggaa
    18181 agcaaatttg acttagttgc agtgtgtgga tctctccctc gtggcgtaac gccggaaaaa
    18241 tttgcttctt ggttggaatc tttacaccgc caaggcttaa aagtggtgtt agataccagc
    18301 aatgcggctc tcaccgccgg cttaaccgct cacccttggt tagtaaaacc aaaccgccga
    18361 gagctggaag tgctggtcgg gcattcactc aactcaatcg aagagattat tagtgcagct
    18421 aaacaattac gttcccgtgg tattgaaaat gtaattatat caatgggcga acaaggctct
    18481 ctttggctaa atcacgaagg cgtgttacaa gcccgcccac cacgttgcga aaatgtagtt
    18541 agcactgtag gtgctggtga ttcaatggtt gccagcttga tctacggctt atctcaaggt
    18601 tggagcaaag agcagacctt gcgttttgcc tcagctactt ctgctctagc tgttgttcaa
    18661 agtaacgttg ggattgcaga ccgtgcggcg ttagacgata ttattaaaca aaccgacatt
    18721 accgtgattt cagaaaatca ttaaacctca atcaaaggaa caaaccaata tgaatatttc
    18781 ttttgtattt cctcaaacac taggcaacgc acgccgtttc ttagtgaatg aaatgttatc
    18841 tgccgctgcc aagcaacaag gacacaatgt tgtggcggca aaccaagctg attttgtggt
    18901 gttattcgat aacgcaattc cacaagaagc tgccggcaag caaggggcaa ttttggactt
    18961 agaacaagcc tttgctcaac ctgaagccag tctcaaacaa gcggtcgaaa atgcacaaac
    19021 ttttgcaaat gctaccgcaa ccactgcggt ttcagcggtt tcatctggtg tgaaaaatat
    19081 cgttgctgtt accgcttgcc caactggcgt ggctcatact tttatgtctg cggaagcaat
    19141 cgaaaattat gccaaagcac agggttggaa catcaaggtt gaaacccgtg gtcaagtagg
    19201 agcaggaaat ccaatttccg ccgaagaagt cgcagcggca gatttagtct ttgtagctgc
    19261 cgatattgat gtcgatttgg aaaaattcaa aggcaagccg atgtatcgca cctcaaccgg
    19321 tttagcattg aagaaaacca ctcaagaatt tgaaaaagcc tttgctcaag cgaaaattta
    19381 cgaaggtggt gtggcaaaag cggataatgc tgaagctcca acttctgaga aaaaagggtt
    19441 atataaacac ttgatgaccg gtgtatcaca tatgttaccg ctggtggtag caggtggctt
    19501 gctcatcgct atttccttta tgttcggaat tgaagccttt aaagatgaaa ccatcgcagg
    19561 cggcttgccg aaagccttaa tggatattgg tggcggtgcg gcattccact taatgattgc
    19621 ggtattcgca ggctatgtag cgttctcaat tgcagaccgt ccggggttag ctgtcggtct
    19681 tatcggcggt atgcttgcta ccaccgcagg agcagggatt ttaggtggta tcgtagccgg
    19741 tttcttagcc ggttataccg taaaattctt aaatggtgcg attcagctac cggcaagttt
    19801 aacctcactt aaacctattt tgattttacc actcttaggc tcagcgattg tcggcttact
    19861 gatgatttat gtcatcaacc caccggtgaa agcattaatg gatgccttag tggaatggtt
    19921 aaacacaatg gggcaaacca atgcaattat tttaggtatt attctcggtg cgatgatgtg
    19981 taccgatatg ggtggtccgg tgaataaagc ggcttatacc tttggtgtgg gtttaattgc
    20041 ttcacaacaa tatatgccaa tggcagcggt gatggcggca ggtatggttc caccaattgg
    20101 tatggcgatt gcgaccctga ttgctcgtag caaattcaac accaaccaac gtgatgcagg
    20161 taaagcttca ttcgtgttag gtttatgctt tatttcagaa ggggcattac cgttcgtggc
    20221 ggcagaccct gtgcgtgtaa ttgccagctc aatcttaggc ggtgcaaccg ccggtgcaat
    20281 ttcaatggca ctaggcatta ccctacaagc cccacacggc ggtttattcg tgattccatt
    20341 cgtttcacaa ccgttaatgt acttagctgc tattgccatc ggctcattag tcaccggcgt
    20401 agtctatgcc gctatcaaac aaaaagcaga ataaagcaca aacacaaata caaacaaaaa
    20461 cggagcgaaa cgctccgttt ttatatcata ttggtactta ctgaattcta tttcatcgaa
    20521 atatcaagtc taaaatatta tttttgcgat cgagatcgaa aaaatcattt tcatcacttt
    20581 acgaataata tcaactcgtt atgattttgc tacgaggaga tactatgcag tttattgaat
    20641 ttaccgatcc tgatagtgga atttcttatc aatacagtga atttactatt gctaatgtcg
    20701 catttatcat taatttctgc tcagatgccg atgttatatc gactttgtcc gcattaggca
    20761 aagatatcac aaactatata aacacctatt cctgttgcac aatcaaattt atggcgaaag
    20821 agcatctaga aaatagcggt tctaatattg acatttatgc ccccgcagcg aatcatcagt
    20881 tcaaacgtaa agaaataatt gctttacaag aaacccttga gcgtttatta tttgagcatt
    20941 atgtacgttt tacaccagaa agctatctct tcattgccga gagagattca cttaaccgaa
    21001 tgtatcagcg tatgtgtgtg ccacgatgtg attttatgca atctttccaa gtggtttatc
    21061 ccttgggcgt taatcaagat tgtttcattt taattacgcc aaaaggaaat ctaaaatgaa
    21121 tcaacaacgt ccagtttccg ttcgtttaaa gcaagaaggc ttaatcgctt ttaagcaagc
    21181 ctatcagcga gcaaaaaaag caggtctatt gaaaccggtc aaataatctt taaaccgctt
    21241 gctctacaag cgatttattt ttccttaatt atcacacctt gctacgaaaa ctatcccaac
    21301 tcaataatcc aatcgaaacc agcaaacaga ccatcaaaat ataggaattg gcatcgagtt
    21361 tttcgccgat ggcaaaagaa atcagcaaca tcaccaacgg ttcaacatag cccagtaaac
    21421 ctaatacatt aatcggtaat aaattgctcg agaggatata aagaataaaa gcactgccac
    21481 ttaccagccc cagcaatccg aggtagaaat aaatttgcgg attttctgcc actattggcg
    21541 tcatttccac ttggctgaga taataaagtg caacgggtaa taccagtaac aactccacaa
    21601 aaaaagtagc taacgtgttg atttgaaaat aacggcgaag ggtaatataa agcggataac
    21661 ccaacccagc tacccaagtc gcccacgaaa tcgtgctgtt aaaaaacaaa ctactgccaa
    21721 caccgatgac tgcgaaaagt agagaaagcc atttcaggcg ggtaaaatgt tctttaaaca
    21781 ccatttttcc tagagccacc gccacaatcg gtaaaagcaa gtaaccaaac gacacctgca
    21841 acgcctgccc gtgattagga gcccataaaa acagccaaag ctgcacgccg gtgttgagag
    21901 caaggagcaa aatgaccaat acaagcggtg gattttgtcg aattttttgc aaaagatccg
    21961 caaaagccga ttgctgttta aacaatataa tcgccagcaa aataaacgga atgactacca
    22021 ctatccgaaa gccgaacatc gcctctccct ctaacgggcg aagcaatatc gcaaaatagt
    22081 aaactgctcc aaacagcaca ttggctgcaa gcgaagctaa aattcctttg agcatttggc
    22141 tttcctctta tcaacaatca aacaacaagc ggttgacttt gaacaaaaat ttacaaatct
    22201 tatctacgcc ccatagtatg aaaaaatttg taagtaagct agctatattc gatttttccc
    22261 gatacaatgc tcccaatttt tcactctttt atttatatta taggacttca taatgaaaaa
    22321 gattttttgg attttactga tcgccatgct tgctgttggc ggttattctt taacaaaata
    22381 caacgattta atgcgtgcag aagaagacat caactccgta tggggaaatg ttgaatcggc
    22441 ttaccaacgc cgtgcggatt taattccaaa cttagtgaat accgtaaaag gtcaggctaa
    22501 ctttgagaaa gaaactttaa cctctgtgat tgaagctcgt gcaaaagcaa ctgcggtaac
    22561 cattgaccca agcaatgcaa ctgaagagca aatggctaaa ttccaagaag cccaacaagg
    22621 tgtaaactct gctctttcac gcttattggt ttcagttgag aaataccctg aattaaaagc
    22681 ccacgaagcg tttttaaatc tacaagctca attagaaggt acggaaaacc gcattaacgt
    22741 tgaacgcaat aactttaacg aaaaagtgaa agagtacaac aagcaagtgc gtgaattccc
    22801 gactaaatta gcggcaatga ttatgggctt taaagcaaaa ccgcaattta aatctgaagc
    22861 aggttctgat aaagcaccaa ccgtaaactt caactaattt tagtttcaat ttattcatat
    22921 taaaagcaat aagctctttc aaatccggtg cttattgctt tatttttaag gggaacaaat
    22981 gggattattt tcttttctct ccaacaaatt accgatagat acgcaacgca ttgaacaagc
    23041 aattgccgat ttagagcaaa aaacctctgc cgaattgcgt gtggtggtgg aacgaaaagc
    23101 caaaatcggc aaaaccgaca acgccgctat gttgcgagca agtgagcttt tcgatgaatt
    23161 aaaaatgcgt gaaacggctg aacataacgg tgtgttgatc tacctttcat tcaagcctca
    23221 ctacgctgcg attattggcg atgaaggcat tcatcaaaaa gtcgataacg atttttggca
    23281 aaaaatctat gccacaatgt gtttggactg ccaacaaggc gattacaccc aagccatttg
    23341 tgatgcaatc aaaatggtgg aagctccgct cgctcaccat ttcccttatc aggctgatga
    23401 taaaaacgag ctttcaaacg aggtggtagt caaatgatga aatccctttg caaatttcta
    23461 tctattttca accgcttgtt attggtgtgc ttggctctgt ttagcctaaa tgccacagcg
    23521 gtgacctacc cagagccgcc taatccgttt tattatatta cggactacac caaaaacacc
    23581 ttgagccaac aagaatggcg gacattagaa gatgccttaa ttgctaactg tgccaagaca
    23641 agttcgcaaa ttgccgtggt gattattcca agcacggaag gcgaggcagt ttcaacctat
    23701 gctcataccc tgtttaacaa atggggaatc ggacggagca aaaataacga gaacaatggt
    23761 atattgttat taattgccaa aaatgatcgc aaactcttta ttgccaccgg acgtgggctt
    23821 gaaggagcgt tacctgatgc gattgcatcg agcattatcc gcaatgacat cacgccattc
    23881 ttcaaacaag agcaatatgc agccggtatc gcccatggct tatccgccat tatggcagcc
    23941 attaacgggg aatatgcccc ttatgcaagt tatggcgaag aaatgcaaga atttgatgac
    24001 atagacggct tactcttttt cttgtttgcc ggcattgtga ttttcctaat tttccgccca
    24061 cgaggaaaca gtacctatat tagtcccagc tcaatggatc aactaggaca aatactaaga
    24121 gaaagccaac gcagaggtgg gggctttggc ggtggtctcg gaggtggctt tgatcgaggc
    24181 tcaggtggat ttggcggagg cttcggtggt ggttttggcg gaagcagagg cagtggcgac
    24241 agcttcggtg gtggttcatc aggcggtgga ggcgctggag gaagctggta gtttccgccc
    24301 aatttaaaac aatacaagcg gtcatatttc tcaaaaaaat tgcgtatttt tcgctaaacg
    24361 cacaaaacgc taatgaaaat aagaccgctt cctcacttct ctaagctatg ccctttttag
    24421 taacaatgct acggcttcac aagctatgcc ttcacctcgc ccggtaaacc ctaatttttc
    24481 tgttgtagtg gcttttacat tcacttgtga tatatcgcat tgtagatcgt ctgcgatcac
    24541 ctgtctcatt ttatcaatat gcggtcgcat cttcggagct tgagcaataa tggttacatc
    24601 gacgttaccg acttgatagc cctgttcttg cacttgtcgg taagcttcaa tcaacaaacc
    24661 acgactatcg gcatttttgt attgcatatc agtatcaggg aataatttgc caatatcacc
    24721 taaagctgct gcgccaagca acgcatctgt taaagcgtgc agcgctacat ctccgtcact
    24781 atgcgcaatg aagcctgtat gataaggcac ttcaacccca gcaatcatca gtggtctatc
    24841 ttcgccaaaa gcgtgaacat caaaaccgtg tccaatacgt atcattttag ttctccaaat
    24901 tatgtgtaag gtaaaattcc gctaaggcta aatcttcagg gcgagtgatt ttgatattat
    24961 cacttctacc tgaaaccaat tgtggctggt agcctgcaag ctccattgca gatgcttcgt
    25021 ctgttacctg aagcttattg gcaaaagcag aggataatgc ttgttttaat gcttgagcag
    25081 gaaaaaattg tggggttaaa gcgtgccata aggttgagcg atcttctgtg tgtgcgattt
    25141 tcgtgccgtt tgctcttttc atcgtatcta ccgctggaat ggcgagaatg ccaccttgcg
    25201 gatcgttaat ttgcaaaagt ttatctaaat ctgaccgctt gaggcaaggg cgagccgcat
    25261 cgtgaactaa tgcccaagca ttttcagtgt tgatttcctg taaggcattt agcactgaat
    25321 ctgctctcgt ttctcctcca aaaacaagtt ggatcttagg ggattttagg agttccaatg
    25381 tggaataaaa agggtctttt cttgccaccg ctacaatcac tttttcaaca tgagggtgtt
    25441 caagaaaaat agacactgta tgctctaaga tagtcttacc ctttaattgt aaatattgtt
    25501 ttggtttttc tgcttgcatc cggctaccaa ctcctgacgc cggaattact gcaataattt
    25561 ttcgcttcat aatatatcaa ttatgtatta tttgtttttt ggtacaattc ggtagaacat
    25621 ctcgttctct tttaccattt ctcgttcaag tcttgctctc tcttcaagtg catctacgcc
    25681 gttctttaaa tcgtaaattt cggcttcaat tagtttattg cgtgaagtaa gctttgtgtt
    25741 ttctactttt aataaagcaa tttcttcttg cacttcttga taatcactcc aaccattttt
    25801 tccaaaccaa aagctatatt ggaaaaagcc gagtaatagg gcaaaaaaag taattaataa
    25861 acgcatttat tttctcttat atgaaatagt aatgaactaa gcgggttgat tttaccttga
    25921 atttgcaaaa aattctaaaa atcttaccgc ttgttactta aacaggcgat ggatagtgct
    25981 aaatgtattc gaaaaattga tataaaacaa acaaatgcgt attttaaagc gattttttta
    26041 aactaaatgt caaaaatttg aagtatgtaa cattttttat ttttcaattt tcgtataatc
    26101 aacccagttt taaatttata actattatga ggtaaccact atgttaaatc gtattgaaca
    26161 agaacttgca gacttaggca ttacaaatgt aaaagaaatc gtgcgtaacc ctagctatga
    26221 gcaactgttt gaagaagaga tgaaatcgga tcttaaaggt tatgaaaaag gcgtcctaac
    26281 aaatttaggc gcagtagcgg tagataccgg cattttcacg gggcgttcgc cgaaagataa
    26341 atatatcgta ttagatgaaa cgacaaaaga taccgtctgg tggacatctg atgcagctaa
    26401 aaatgataat aaaccgatga ctcaatctac ttggcaaagt ttaaaaacct tagtgaccga
    26461 tgagttatct aataagcgtt tatttattat tgatgctttc tgtggtgcaa gccctgagca
    26521 tcgcatcaat gtgcgtatta ttacccaagt tgcgtggcaa gctcactttg tgaaaaatat
    26581 gtttattcgt ccaacagaag aagaattaaa agatttcaaa ccggattttg tggtaatgaa
    26641 cggttcccaa gtaactaacc cgaactggaa agagcaaggc ttaaattcag aaaactttgt
    26701 ggcatttaat atcacagaag gtgttcagat cattggcggt acttggtacg gtggtgagat
    26761 gaaaaaaggt atgttctcta tgatgaacta cttcttacca ttaaaaggtg tcgcttcaat
    26821 gcactgttca gccaatgtgg gcgaagaagg tgatgtggcg gttttctttg gtttatcagg
    26881 aaccggtaaa acgacactat caaccgatcc gaaacgcaaa ttgattggtg acgatgaaca
    26941 cggttgggac gaaaacggcg tatttaacta tgaaggtggt tgctatgcga aaaccatcaa
    27001 cctttctatt gaaaacgagc cggatattta tcgtgcaatc cgccgtgatg cgttattaga
    27061 aaacgtggtt gtgcgtgaag atggcactat tgattttgat gataaatcaa aaacagaaaa
    27121 tacccgtgtg agctatccga tttatcatat tgataatatt gccgtgccgt caaaagcagg
    27181 acacgctaaa aaagtgattt tcttaacggc agatgcattc ggcgtattgc caccggtgtc
    27241 taaattaacg cctgaacaaa ctaaatacta cttcttatca ggctttaccg caaaattagc
    27301 aggtacagag cgtggtatta ctgagccaac cccaactttc tctgcttgtt tcggtgcggc
    27361 gttcttatca ctccacccga cacaatatgc tgaagtgtta gtgaaacgta tggaagcagc
    27421 cggtgcggaa gcctatttag tgaataccgg ttggaacggc acaggtaaac gtatttcgat
    27481 taaagataca cggggtatta ttgatgccat cttagacggc tcaattgaga aagcggaaat
    27541 gagtacatta ccaatcttca atttagcaat tccaactgcg ttaccgggtg tagaaaccca
    27601 cattttagac cctcgtaaca cttatgaaga caaagcacaa tggcaagcta aagcagaaga
    27661 tttagctggc agatttgtga aaaactttga aaaatatgcg accaacgagg aaggcaaagc
    27721 attaattgct gctggtccga agttataagt tgtaattata agttataatc gctaaaaaat
    27781 tagtttagga ctaaaccttg aatgaggttt agtccttttg tataaaggag aagtacaata
    27841 atgacaacat tccaattaag gctgaaagcc aaagatgagc ttaccccaca cccaacagca
    27901 caatattggc gaaaatgcca agtggaagga ctatttgatc tgccgtttat ggatttagtg
    27961 tttagagcgg cacaagttca ccgtgaaaat tttgatgcta atgcgatcca gctttcaacg
    28021 ttactctcaa ttaaaacagg aggctgtccg gaagattgcg aatattgccc ccaatctgcc
    28081 cgctatgata cgggaataga aaagcaaaca atgcttgatg tagagacgat tgtagaaaaa
    28141 gctaaaattg ccaaagagcg tggagcaagc cgcttttgta tgggggctgc gtggcgagga
    28201 cctaggccta aagatattaa agtagtctca gaaatcatca atgcggtgaa atcattgggg
    28261 ctagaaacct gtggtacttt cggtatgctt gaagagggaa tggcagaaga attaaagcaa
    28321 gcagggctgg attactacaa ccataattta gataccgacc ctgaacgcta taacaaaatt
    28381 atccataccc gaaatcacga agatcgaatg gacactttag gtaaagttcg caatgccggc
    28441 ttgaaagttt gctgtggcgg tattgtggga atgaacgaaa cccgccccga gcgagcaggc
    28501 ctaattgcaa gcctcgctaa cctcgatcct caacctgaaa gcgtaccgat taatcagttg
    28561 attaaagtag aaggtacacc gcttaccaat gccgaagatt tagactggac agaatttgtt
    28621 cgtaccattg cggtagcaag aattactatg cctcaaagct ttgtccgact ttctgctggc
    28681 agaactacta tgccggaggc aatgcaagcc ctctgtttta tggcaggagc aaattctatt
    28741 ttctatggcg ataaattact tactacagaa aatccggaag aagatcatga tcgccaatta
    28801 atggataaat tagatttata tccgctacaa tatatagcct gagtgccaat gattttcgcc
    28861 tgaatgaaaa ttaaagaatc aatcgttatt ttacgcaaat ttctaacata aaataaccgc
    28921 ttgcaaaatt cgttcttgtc ttatttttaa atttatctat aatgtgaggc cttacgcaag
    28981 cttgcgtaat tcgatggggc gttattggtt cctcgcaatg gtgttcagct tacttgatca
    29041 ggttcggaag aaagcagtct gggttgaaat ttccgtgtgc cgagggaggc tggtaatgcc
    29101 ccaccctttt ttcagttcta tcaggagaac gttatgctcc agatcacccc cattccggca
    29161 ttaaaagata attacatttg ggcaatccgt aacgggcaag atgtgattat tattgatcca
    29221 tcagaacatc agccagcatt aaactttatt gcaaaaaatg cgttaaattt aaccgctatc
    29281 ttgattaccc ataatcacca cgaccatact gatggggtga gtggtattgt tgagcaatat
    29341 ccgaatatcc ctgtttatgg tccgcaagaa gtggctgaat ttgccaatgt gattgtctcg
    29401 cctgaacaac atatcagcct gtttggttat gatgtaagga ttattgaaag tggtgggcat
    29461 accgcagggc atatcagtta tttatttggc tatgattatc tgttttgtgg cgatgcgtta
    29521 ttctccggcg gttgcgggcg ggttttcacc ggtgattacc aagcccaatt tgatgcgtta
    29581 caacgcttta aaaatctgcc taactcggtt aaagcctacc cggctcacga atacaccaag
    29641 agcaatttga aatttgcaga agcggttcta ccaccaagct gtgtattatc ggaatatcaa
    29701 gaacaggttg atcttttacg ttcgcaaaac aaaccgactt tgccaaccac tattggcttg
    29761 gaaatgcagg tgaacccgtt tatgcaagcg gtcgatttag ccgaatttat tgcacttcgt
    29821 cagcaaaaag acaattttta acctcatatt tctaattaag cattaaagcc tctcacttta
    29881 atgctttttg gttaaataaa acctttgcaa acatcgcttg tcaattccac tctggcttat
    29941 cctatggtat agttacgact atttttagct taatttatta ttttagtgag taaaattctg
    30001 tgaacttcga tcctcaaaat atgcctaagc acgttgccat tattatggat ggcaatggca
    30061 gatgggctaa gcagaaagga aaattacgca tttttggtca tcagaatggt gtaaaggcag
    30121 ttcgttctgc agttagtttt gcagcaaagc atcatatcca agttttaacc ctctacgcat
    30181 ttagcagtga gaattggagc agaccagaaa ctgaagtttc agctttaatg tctctgttta
    30241 tgaaagcttt agattctgaa gttaaacaat tacataaaaa taatattcgc ttaaagatta
    30301 taggcgataa atccgccttt agcgaaaatt tacaaaaacg cattgccgaa tcggaaaaat
    30361 taaccgaaaa caatactggg ctaatcttaa acattgctgc caactatggt ggttactggg
    30421 atattgttca agctgctcaa caactagcag tgcacgttaa atctgaacaa cttgctgtgg
    30481 agcagattac accagcattg tttcaacaac atttagtgac agaaaaccag ccgcaagtgg
    30541 atttattaat tcgaaccagt ggtgagcagc ggatcagcaa ttttctatta tggcaaattg
    30601 cttatgccga gctgtttttt agcccggttt tatggcctga ttttaatgat gaggctttta
    30661 gtgatgcaat ttatgcttat cagcaacgtg aacgccgatt cggtggttgt taatataaaa
    30721 agaataagga aatacaatgc ttaaagaacg tgtactttca gcgattatta tgattattgc
    30781 cgtgctggct gccatatttt ggctctcacc acttccttta actttagtgt tatcggcaat
    30841 tgttgtggct gcaatgtggg aatgggctca atttgccggc tttaaacacc ctgtgccacg
    30901 tgcaattgtg gcaatggtga caatctgctt attacttttt gcgatcgttg cgaatactga
    30961 ttatatccga gccacccgtt ttattactga tgagactacc cctatcctct ttattggctg
    31021 tatttggtgg ttaattgccc ttgtcctagt ggcaacttac cccaactcgg caaaactgtg
    31081 ggaaaaatct gttgcagcta aattcctatt tggacttgct accttagtgc cgtttttaat
    31141 tggcacgctc gcattgcgtt tccataatta tgcatttgat ccataccaag gaacttattt
    31201 attcctttac gtctgtttat tagtttgggg agctgattca ggtgcttatt ttgctggcag
    31261 agcctttggc aaaagaaaac ttgccccaaa agtatctccg ggtaaatcgt gggaaggcgt
    31321 aattggtggc gtactcacct ctagtttgat tgcctttacc tttttacaac ttacaccggc
    31381 aaatgtattc ggcaaagcat tagccactac cccatttatt ttagtttcgg tcggtatggt
    31441 tgctatttca gtcttaggcg atttggcaga aagtatgttt aaacgccaag caggcattaa
    31501 agacagtagc cagttaattc ctgggcatgg aggtatttta gatcgtattg atagtttaac
    31561 cgctgccgtt ccgttttttg ctacattctt cttttttgta ctatagaata tgacgtccat
    31621 cattgcattt tttattttaa tttgcgtact ggtttttgtg catgaatacg ggcacttttg
    31681 ggctgctcgc aaatgcgggg taaaggtgat ccgtttttcg atcggatttg gtaaagtctt
    31741 atttaagaaa aaagataaac aaggaaccga atttgttttt tcacttattc ctctgggcgg
    31801 ctatgtacaa atgtggaatg atgaaacgga tatcaacgct ccagctcaac aagctcttaa
    31861 cacaaaatct gtattgcaac gtgcatttat tattatagcc ggtcctgctg caaattttat
    31921 ttttgcgatt ttggcatact gggtcgtttt tattgccggt attccaactg ttaaacctgt
    31981 tattggggaa attttaccaa acactatcgc ctcccaagca agaattccta ccgaattgga
    32041 aattacaaaa atcggtcatc aatctatcca agattgggaa agtgcatctt tagcactagt
    32101 tggttttgtg ggcaataaaa atgtaccgtt agagggaaat atcaacggca actcaacaca
    32161 aaaatatgaa ctcgatttat ctaactggag tattgactca gccaaagaaa acccattaac
    32221 cgcattaggt attcgcccca aaagtgcaaa agtcaccgct gaaattaaac aagttgtcga
    32281 aaattctcct gcaagccaag tgggtattca agcaggtgat cgtattcttc aaattaacca
    32341 gcagccattt aattggttca atttagttga actggtacaa gcaggtaaac ctattgaact
    32401 taaaattgaa caacgaggtc agattaaaga ccttgtcgtc caaccagaaa aaaaagacga
    32461 acgctatatt atcggggtaa taccaagtta tgagcctctt gcagataaat atcgtaccga
    32521 attaaaatat gatattctta ccgcatttta taaaagtatc gaaaaagtgt ggtctcttac
    32581 ccaaaccata ctccaattta tcggtaattt aataagcggt gatttgtcca ttaaaaattt
    32641 aggtgggcca atttcaatgg caaaaggagc cggtgcaaca gctgaaatcg gcttagttta
    32701 ttaccttagt tttatggctc taatcagtgt caatttgggg gtaatgaact tatttccact
    32761 tttaccctta gatggtgggc aacttgtttt attggctgtt gaagcaattc gtggaaaagc
    32821 attatcagaa aaaatacaac tcaaattcca acaaattgga tttgcattcg tgctgagttt
    32881 aatgttattc gcctttgcca acgatataat tcacttttaa caagcggtta aaaaaggtga
    32941 cttttttgca aaaagcaccc tgacatcaaa atccataata tggatttaaa ctatattctt
    33001 aataattttg caaaacgatc ataggataat ttcaatgaaa aaattattac tttcctctct
    33061 tttaattgca aacggtgtag ttgctgcacc tttcgtagta aaagacattc gtgttgaagg
    33121 tgtgcaacct acaacaggcg aatctatcat ttcatctatt ccggttagag taggtcaaac
    33181 agcaacggat actgacgtat ctaatgtcgt ccgccatcta ttcagccaac aacgttttgc
    33241 agatgttcgt gcaacacgag aaggcaatac gcttgtcatc aaagtcgctg aaaaaccgat
    33301 tattggcaag gtagagatcg aaggtaacca agcgattcct aaagatgcct tagagcaaaa
    33361 tttaaaggca aacttaatta accaaggtga aatttttgat gctgccaagc ttgaagcttt
    33421 taaagaagga ctaatcgaac attatcactc taccggccgt tatgaagcca aaattgacac
    33481 atctgtttcg aataacaccg aaggtggcgt taatattaag ttagcgatta atgaaggtga
    33541 agttgctaaa gccaaaacaa ttaagtttga aggtaataat gccttctctg ataaaaaatt
    33601 attagaaaac ttagatattc aacctgatgt ttcttggtgg aatatttttg aaagtagcaa
    33661 attcgaacaa accgcctatc aaaaagactt agaaacatta agagattttt atttaaatcg
    33721 tggctatgca aaatttgcta tccaagatac cgatgttcaa ttcaatgata ataaaacgga
    33781 agttgcattg acctataaat tagatgaagg gtcacagtac catgtcagtg aaatgcgcat
    33841 tatcggtaat acagccaata tggatagcca gctcaacgcc ctactaaaag aattcaagcc
    33901 tggtcaatta ttccgtaaat cagaccttac acaaattgaa gaagagatta aatctatttt
    33961 aggggacgca ggttatggtt cagctaaagt agatatttat cctcaattta atgaagaaaa
    34021 taaaaccgta aaaatcagtt ttgttgtgga tgccggtcgt cgtatttatg ttcgtaaaat
    34081 ccgttttgaa ggtaatggtg tcactgcaga ttcaacatta cgtcgtgaaa tgcgccaaca
    34141 agaaggtgct tggctttcca caaacaaagc ttctctaggt aaagctcgtt tagaaagaac
    34201 cggtttctat gaaagtgttg atatgtcaat gccaaatgta gaaggtacag ccgatcaagt
    34261 tgatgtagtg tataaaatta aagaacgcaa taccggtagt attaactttg gtatcgggta
    34321 cggcacgaaa aacggtatca gctatcaagc aggaattaaa caagataatt tcttaggtat
    34381 ggggtcaact atcagtctaa atggtacccg taataactac ggtaccagcg ttaacctagg
    34441 ctataccgaa ccttacttta ctaaagatgg tgtaagttta ggcggtaata ttttctatga
    34501 agattatgat aactcagaca atgattcaat ggcttcatat aaacgccaaa cctatggtat
    34561 taacggcaca ttaggcttcc cggtaaatga aaataactca tactacttag gtttaggcta
    34621 tacgcacgat aaaattaaaa atgcagcacg tgagtacact cgtgagaaat atgtaaaatc
    34681 aatgaacttt gagttcgatc cagctgccga ttattacaaa aaaatcaaag ctgatgattt
    34741 tgatttttct ctcggttgga actacaacag cttgaataga ggctatttcc cgactgaagg
    34801 aactaccgca aacattggcg gtaaaatcac aattccaggc tctgataata aatattaccg
    34861 agtcagtgca gactttagaa attattaccc gttaaaccgt gagcacaaat gggtaatttc
    34921 aacgaaagct agcattgctt atactaatgg atttggtggt aaagaagttc cgttctatca
    34981 gctttatact gccggaggta ttggtacact aagaggtttc tcttacggtg cagtagggcc
    35041 tcaagcgatt tactataata caaaatccgg caaatttgat agcatgaata atgatattat
    35101 cggtggtaat gcgttagctg cggcaagctt ggaattaatc acaccaacgc catttgtgag
    35161 cgaaaaatat cagcacaatg taagaacctc tctctttgtt gatgctgcaa gtgcatggaa
    35221 tacaaaatgg aagaaagatg aatatacgaa cttgcctgac tatggtgatt tcaaacgttt
    35281 ccgtgcttcc gccggtattg cattccaatg gatgtctcca atcgggccat tatcattctc
    35341 ttatgcgaaa ccaattcgta aatatgataa tgatgatatt gaacaattcc agttcaacat
    35401 tggtagttca ttctaattaa ccacaagcgg ttaataaatg taaaaaattt gcaacttagc
    35461 cgcttatttc aaaactgttc atacaaggaa aacaaatgaa aaaattattt aaaatgactg
    35521 gcttagccgt agctttagcc tctacaaccg gaatcgcgaa tgctgcagat actattggtt
    35581 tcgtagatcc aagctatgta ttacaaaacc accctgtatt attagatgct tcggcaaaat
    35641 ttgataaatt catgaaagaa agccaagaaa aatttgctgc tgatgaaaaa aaattagcag
    35701 atgaaaataa aaccttaacg gctgagcgca ataaaattaa tgaagatgcg caaaaattac
    35761 aaaatgaaca aaaaaatgta gaagcttcta tcaagaaaaa agtggcagca ttagagaaag
    35821 atgcgcctcg cttacgttca aaagagattc aagcacgtca aaatgcgatt caaaaagaag
    35881 caaacgcatt ccaagctaaa gtaacagcaa ttcaaaaacg tgaagctgat tttgcaaaaa
    35941 aagcagaagc cttccagaaa cgtgcagatg aattccaaaa acgtattgaa caagcgaata
    36001 aagaaaatgg tggcattaac ccacaagaag cgcaaaaaca agcggttgat gaagtaaatg
    36061 caaccattaa agagatcgca aaatcgaaag gttacacttt agtattacaa ccacaagtag
    36121 cactttatgc tgaagatgaa ggtaaagata ttactgaagc agtacttgat gctattgtta
    36181 aaaaacatcc ggaaattaaa atagaaaaac ctgcaactga agctcaacca gctacagaaa
    36241 aagaaaccaa agctgaagaa actaaaccag aagaagcgaa aaaataatgg caaatttccg
    36301 tttaattgat ttagcggagc atatcggcgg tactcttagg ggtaacgccg atttggctat
    36361 tcaaagtatt gctgctttag ataaagccga cagctcgcaa attaccttta tctcaaatgc
    36421 aaaatatcgg gaaaatttga ccgcttgcaa tgctggagct attatcgtca gcccggcaga
    36481 tgtagaattt tgccgagcag atcaaaatct tatcatcgtt gccaatccgt atgttgctta
    36541 tgctcaactg gctcaatata tggattctac tccgaaagca gcgagcgaaa tccacccaag
    36601 tgcggtgatt tcacctgaag ctaaactggg taataacgta tcggtagggg caaatgccgt
    36661 gattgaaagt ggcgtagaat tgggcgatga tgccgtgatc ggtgcaggct gttttgtggg
    36721 aaaaaacagt aaaatcgggg caagaaccca actttgggca aatgtttcgg tgtaccacaa
    36781 tgtacaaatc ggagctgatt gcttgattca atcctcaacg gttatcggga gtgatgggtt
    36841 tggctatgcg aatgacaaag ggcaatggat taaaatccca caaaccggtg gtgtgattat
    36901 cggtaatcgt gttgaaattg gtgcttgcac ttgtattgac cgaggtgcat tagatccaac
    36961 cgtaatcgaa gataatgtga ttattgataa cctttgccaa atcgcccata atgtacacat
    37021 tggttttggc actgccgttg ccggcggcgt cattatggca ggcagtctaa aagttggtcg
    37081 cttttgccaa attggtggag caagtgttat caacggtcat atggaaatct gtgatggtgc
    37141 cataattacc ggaatgggta tggttatgcg cccaattaca gaaaaaggaa tttactcatc
    37201 aggtattcca ttacaaacca ataaagaatg gcgaaaaacc gcagcacttg taatgaatat
    37261 tgatgaaatg aacaaacgct taaaatcgtt agaaaaacgt tttaacgatt aattttatta
    37321 gaggtcttaa agtgacagaa atgacaactg aaaatcgtga gccaaatatt attgaagtaa
    37381 ccgaaattat ggatatgtta ccgcatcgct accctttcct gttagttgat cgcgtaaccg
    37441 attatgaaga agggaaatgg ttaaaagcca ttaaaaatgt aaccttcaat gaaccttgtt
    37501 ttaccgggca ttttcctggc gcaccaatct tcccaggagt attgattctg gaagcaatgg
    37561 ctcaagcaac tggcgtatta gccgttgcca cttatggtaa gttaagtgaa gacgaactct
    37621 actattttgc cgcaattgac aatgctcgct ttaagcgacc ggttgtgccg ggcgatcaac
    37681 ttcaacttga ggttgaattt cttaaagaag tacgtggtat tactaaattt accggtaaag
    37741 catacgttga tggcaaatta gtctgtgaag cagatttaat gtgcgctcgc cgtaaataat
    37801 tcgatataag cccaaactag agggaacaaa ctatgcgtct aattgattca acagcaaaaa
    37861 ttagcccgct tgccatcatt gaagaaggtg ctgaaattgg cgctcacgtt gaaattggtc
    37921 cattttcagt catcggtaaa gatgtcaaaa tcggggctag aacgaaaatt cactcaaatg
    37981 ttgtcattaa cggcatgact gaaattggtg aagataacca tattttccaa tttgccagca
    38041 ttggtgaaat caaccaagat ctaaaatacc aaggtgaacc aaccaaagtg gtgatcggta
    38101 atcgtaaccg tattcgtgaa agtgttacta ttcaccgagg tacggtacaa ggcggtggcg
    38161 tgacgaaaat cggtgatgat aacttattta tgatcaacac ccacatcgca cacgactgct
    38221 ctatcggtaa ccgttgtatt atcgccaata atggtacgct agcaggtcac gttaccctag
    38281 atgatttcgt gattgtggga ggaatgtccg ccattcacca attcgttgtg attggttcac
    38341 acgttatgct tggaggcggt tcaatggtca gccaagacgt accgccttat gtcatggcac
    38401 aaggtaacca cgcacgccca tttggtatta actttgaagg gttaaaacgt cgtggctttg
    38461 ataaaccaac tatgcacgct attcgcaaag tctataaact gatttactcc agcggaaaaa
    38521 cattggaaga gtgcctagta gaaattgagc aaattgcagc aacagaacct gcgattgcta
    38581 tttttaaaca attcttcaaa cgttctaccc gtggtattat tcgttaataa acgaaacccc
    38641 gaaatcaatt cggggtttgt tttatcaagc gaccgtcgaa cctttcaaca attttcgaat
    38701 ccaagctcga tttgggctaa ggttatgcca aatatcctca ctgattggca caggctcatt
    38761 cacaatcagg cttgctaaca attcccctag aagtggtgca gtcgtcaaac ctcgagaaga
    38821 caggccgttt accatataca gattggtaaa aatttcagca ttttctaccg cttgtttccg
    38881 tctcaactgg ttgtataaat tggcatattg gcttttttgc tgctcaaaat gatgcactgc
    38941 cccaaccatc ggtacacgat cacgaaacgc cgcacgaata ccgactttgg ctttattttc
    39001 agataaatca attccttgcg tccactcaca aacggttaca ttttgctgaa gttttgcaac
    39061 attctcccaa tgctccgata aactaaactc ggtttctgca ttatcccgaa tatggcttgc
    39121 tccaatgcaa tgcgtgccat aggctgacat tggcgttaaa taaccatcat aacaaagcac
    39181 acacttcagt ttttgtaatt cgcttgtagt cggaatttgg ctcacttgcc ctcgtaccgg
    39241 atacaacgga atgccgttcg cttggctaaa ttcattcaac gtatgtccat ttgccagcac
    39301 aaccgcttga tgtcgaaccg tttctcccct cgtctgccat tgccacattc cattagaaaa
    39361 ggttaaatgc tcaactttgt gattcagtac aatcttcaac cctttctgct ccagccaagt
    39421 aaagccattt ctaacaagtt gtaccggtga aagccaacca gcttgcggaa taaatgcccc
    39481 gctgtttggc acgcttaaac ctaatttttc acttaattct gcctgtgaac aagattttaa
    39541 taaggtgtca tcagccgtct gctccaccat tttttccagt tttttagccg ttttctcgtc
    39601 ataggcgtaa agcactaccc cgcttaaatt atgctcaaac tcaatgttgg atttcagttg
    39661 ttgcaagcgt tgcaatgcat aatcaaaact atggatataa aactgtacat ttcgctcgtc
    39721 atcatcgctt aactgtgggt aaatcgcccc ttgtaaattt cctgaagcat ttattgccaa
    39781 ggtttcatct ttgcaataca gcgtgacttg cttgcctttt tctaacagcg ataacgcaac
    39841 gaagaaactc gctactccgc caccaataat tgcaatgtca tcagcggttt catttttggc
    39901 ataaaaatag gggtaattag gctcggaaac ttggctatct aacggtttct cgccccaaag
    39961 catttctcgt tttttgccaa atcctttgcg ttttttcact gcaaaacctg cggcttccag
    40021 ccctcgtctg accatacttg aagcggtaaa agtagcaaaa ctgccgccat tggcacttag
    40081 tcgaaacatt tgcagatata actgttcgtt ccacatttct gggtttttat caggcgaaaa
    40141 gccatctaaa aaccaagcgt caatcgtgcc gctataaaga tcgcctaatt ggggtaagtt
    40201 ttcagcaatc tcaccgaacc ataaatctaa ataaacctgc tcaaaatgat aacgttggca
    40261 acctatttgg cgaggctgcc aacaagcggt taaattttca gataatgttg caaattgcgg
    40321 atagcgttgg tgaatatcag ctaattggct ggccgtcaga ggaaatttct caaatgagat
    40381 aaaatagagt cgttttagtt tactttgcgg aaatgctgcc cgaaactgtt ggaatttgtc
    40441 agcaacggct aaaaaattca agcccgtgcc aaagccggtt tccgcaataa caaaagcctc
    40501 tttcgggtga gattgccact tttcccacag ttggttacct tcttgaaaca catagtaact
    40561 ttccgccaaa ccatcttggg tagaaaaata aatatcatca aattgctccg acaccggtgt
    40621 atctgcatca ttaaatgtaa gtgtcgcaaa agtcagttta cccatcatat ccccttaaaa
    40681 acaaaacacg gaaaacccca agattttccg tgtttcaacc agttcaatag taccaatgtt
    40741 agaaaatgtt gctggcaaaa ataacgatca taccaagtgc gcctacaacc gttagcattg
    40801 aataaccaaa agtacccatt ttacaatcct cattgttaat tatgattaaa acggctttat
    40861 tctagcataa tttccatcgc tttgaatgcc tatgcttgaa taattttgcc aaaacaagcg
    40921 gtcaattttt gtaaatcttt tacgcctttg gcactttcca cgccagaatt taaatctaac
    40981 ccgacacagc cttgagcaag ggcttgctca atattctcag tgccaatacc acctgccaat
    41041 aacgcttttt gttttaaggt ttctggaatc aacgcccaat taaaggtttt gcctgtgccg
    41101 ccttgctgat tgcctacttt gctgtctaat acataacgag caatctgtgg attatcgtta
    41161 aattctagat tttcaacctc aacatcaacc gataaggctt tccagatttg agttttacta
    41221 cctaatttct ctgccagttc tgcaatgtat tgctcatctt ccgagccgtg caattgaact
    41281 gcaaataact caagctgttt tgccattttt tccacaaatt cgaccgcttg attttggaac
    41341 acccccacat aacgcaacgg tgcattcacc accaattctt gggcttggcg aagtgaaagc
    41401 tggcgaggcg agccttcggc aaaaattaaa ccgccatata atgccccttg ctcataaacc
    41461 gctttcacat cttgcacacg ggttaagcca cacactttgt tttcaccaaa aatcaccgcc
    41521 cgcaccgcat tattgagatc ggcacttccc attaaactgc tgccgattaa aaaagcatga
    41581 acatacggct taatgttttt cacttgctgg tgatcgttaa tacccgattc tgaaatcaaa
    41641 cagacatcag ccgaaatttg ggcttggtat ttttccacca aacgcacaat gcggttcata
    41701 tcaatcgtga gcgtgtgcaa atcacggtta ttaacgccaa ttaccttcgc ccctaaggct
    41761 aaggcacgtt caaattccgc ctccgtgctg gtttcagtca aaacgcccat tcctaactcg
    41821 tgagccagtg tggcaagttc acggtaggtt tcatcattta ccaccgataa catcaataaa
    41881 atcgcatcag cattataaaa acgggcaagg taaacctggt atgccgaaat cataaaatct
    41941 ttacacaaaa tcggctgtgt ggtttggcgt ttgacttgat cgatataacg gaaatcgcct
    42001 tgaaaatatt gctcatcggt taaaaccgaa atcgccgcag cgtaattttt atacacttgg
    42061 gcaatactgt ctaaatcgaa ctcagcacga attaaccctt ttgacggtga agctttttta
    42121 cattctaaaa tataagctgg ttcttggtgt gtgcctttgg caagagccgc atagaaatca
    42181 tggtcgcttt ttacaatttt gtgctgaaat tcacttaacg gaaaggcttg ctctttttgt
    42241 gccacccaaa tggctttatc ttgtacgatc ttttgtaaaa tcgtcggttg gtttggttga
    42301 gcgttatctt gaacgatgtt ttgcatataa attcctagag cgaaatcggt ttgaatggta
    42361 aaatctgccc ttatttttac ccgaaaaagt ctcatttcac aagcaaaact aagatgaaat
    42421 cacaagttat acagcattta tcttatttag aaatcgccct gagagttaat caactttggg
    42481 aggcgacacc accaagccct gaagccttag ccaatgagca acctttctgc gtggaaacct
    42541 taaccccaac ccaatggcta caatggattt ttattcccag aatgcgggcc attttagatg
    42601 caaatgccga tttacctcgc aattttgcaa tcacccctta tttagaagag gcattgaaaa
    42661 acgaaggtta tttacaagcg atttgtgaac cgctattagg tttggaaaag ttgttgaaag
    42721 attaacttct ctctcagttc ttttattaat ctgacaaatt cgttgatagt gccagcgtcc
    42781 acgctggtac taattttaac ggttaattaa tcaaaatttg gcacaagcga ggacgcttgc
    42841 gccatcatag agatttgata aattatactt aatgtattat gaccttagat attttatacc
    42901 aagacaactc gcttatcgcc atcaacaaac ctgccggagt gttggtgcat cgttcttggt
    42961 tagataaaca cgaaacggtg tttgcaatgc aaaccctgag ggatcaaatc gggcaacacg
    43021 tttttccgat tcaccgcctt gaccgcccaa cctcaggtgt attgctgttt gctctcaaca
    43081 gcgaaaccgc ccgaataatg agcgagcagt ttgaacaaca cctagtacaa aaaacttatt
    43141 tggcggtggt gcgtggctat ttacaaggtt cggcacaaat tgattatccg ctcaaagtga
    43201 ttttagataa aattgcggat aaattttctc aggaaaaaga ggctcaagcg gcgattactg
    43261 attataaagg cttagcaacg gttgaaatgc cttaccctgt cggcaagcac caaacctctc
    43321 gttatagttt ggttgaactt agccctaaaa ccgggcggaa acatcagctt cgccgccacc
    43381 tgaaacacct gttccacccg attatgggag acagcaaata tggcgactta caccaaaacc
    43441 gtgctttagt tgaaaaatca ggcgtaagtc gtttaatgtt acacgcccat aaattgcaat
    43501 ttcagcaccc gaaaaatttg caaaaaatag agataattgc atcgcttgat gagcaatggc
    43561 aacgcctctt tgcatttttt gactggaact ttactcaata ttattagaca aaaaagagga
    43621 ttgaatggat aattcacttt tatcattgac acacgagcaa caacaagccg cagtagaaga
    43681 aattcaaaaa ctgatggcac aaggcatcag tgccggagag gcaattcaaa ttattgctaa
    43741 tcaattacgt gacaaatatc aaatattgga gaaatcaaac aatgaataaa ttatggacag
    43801 tgcttgccct aacaataact tcccactata gctttgctgc cgctgaaaaa atagtcacta
    43861 aagatttacc ggcagaagga aaacctgcag tcgtgctaca ggtttttgat gaaagtgaaa
    43921 aaattgcaaa acctattaag ggaaataagc tctttattag caaaaaacaa acaaggcttt
    43981 gctggcacag tattaatctt cctgtacaaa ataaagttac tattgcagaa gctttctatg
    44041 cccctgctgc aatgaaatta gcttctcccg gctctaaaat taattcttct gcagacaaga
    44101 aaaatcatac tatcattact gaaataaacc ttgcaaataa tcaagtatta aatcgttgct
    44161 ggggttttga taaaactgac cctgtcggta aatacaaaat ggaaattcaa attaacgatc
    44221 acattttcaa aggtttagaa tttgaaattg taaaataacc taaaagccac agagtaacac
    44281 cctgtggctt tttgctaaat cattgttttt aaattggtta aattgtgcag caaataatct
    44341 ttactcttca caaaggctct cgcctgttgc cagttgctaa attgttgctg agtgcattga
    44401 ttaaaacgta ccagcacttc caaactttca ttgccgacac aaataaaatc agctaataat
    44461 tgggttaatt tttcactgtt ttcaccatcc attgcagttg caattttctg ctcccattta
    44521 accgcttgtc cgagcaaata accccgctgg gctttgctta aattactcaa ccacatccca
    44581 tccgcttttg gcattgcctc aaccaaagta aataagtcgc ctagatttcc ttgcttgatt
    44641 tcaaactcca attcacaaat cggctcttca ccaaaatgat ttttaatgat gccctgatct
    44701 aacgctacct caatgtcaga catccccact tgcaccaacc aagttttacg agtgaaatcg
    44761 gtgctgaata tcgcttgcaa gctttctgca atctgctctg aattttcaaa cggcaactgg
    44821 tatttttcca ctaatgtttg aaaatccggc tggctattgg gtaaagctaa attatattcc
    44881 ggacgaatat gcaaaccgcc tacaatttcc ccttgtgttt ttaacgtgat ttcatattgt
    44941 tgattcacag aacgcacccg cagccccatt ttttgcgtgg caaaaaattg ctcgggcgta
    45001 tcataatagg tgttgcctaa caattccgtt tgatgagcaa gcacagggaa tggcgaggtt
    45061 tgattcaagt agttttccac taacgccaca ttctgctgtt ccaacattat tttcagttcg
    45121 atttctgctt gtttttggtt ttccatttca cacgcccctg caacgttgta taatcaagcg
    45181 gttattttat caataaattt tgcaaaatgt tttcaaaaat tcaccataaa ctgaataact
    45241 ttgtccagcg tggactcgac aaccatttac gcctcgccgt taccggctta agccgtagtg
    45301 gcaaaacggc atttattacc agcttggttg atcagctttt gcatatcaac aaaggcggta
    45361 attcgcattt aaacctgttt gcgcctgcac gccacgggca aattctatcg gtaaaacgcg
    45421 ttgagcaagg ggatttaact attccccgct ttgaatatga taaaaaccgc caaagccttg
    45481 aaaatcaacc acctcaatgg cctgaatcca ccactggcat tagcgaaatt cgccttgcga
    45541 ttcgctacca gcggcaacat tctctgctac gtcatattaa agaaaccggc acgctttatt
    45601 tggatatttt cgattacccg ggcgaatggc tgttagattt acccctgctc tccctttcct
    45661 ataaagaatg gtcgcaaacg caacaaacca tacataaaga tgagcgtgca gagcttgcca
    45721 caccttggtt acaagcggtt aaaaaactcg atctttttgc aaaaaccgat gaaaatttac
    45781 tggcagaatt cagccaacaa tacaccgatt atttgctcgc ctgcaaagct caaggaatgc
    45841 aatatattca gccggggcga tttgtgttgc caactgaaaa tgccaaaggt gcaccggtat
    45901 tccaattttt tccgttatta gatttaagcg aagctgagtg ggaaaagttg gaacaaagcg
    45961 acagaaacag tattttccat accctcaaaa aacgctatga gcattaccag aaaaaaatcg
    46021 tcaaaccgtt ttatgaagat tacttctctc aatttgaccg ccaagtgatt ttggcagact
    46081 gcctcacacc gttaaattat ggctataacg aatttatgga aatgaaatta gggttacagc
    46141 aactgtttaa acatttccat tatggcaatc gttcgctatt tcaccgtctg ttttcgtcca
    46201 acattgataa attgctattt atcgcaacaa aggcagatca cattactagc gaccaagtgc
    46261 cgaatttgga aagcctaatg cgacaattag tgcaagaagg gggaagacac gcagaatttg
    46321 atggtatcga aaccggctat ttagccattt cctcgattca agcaaccgat gcggtgaaag
    46381 tgactcagca agataaaatc attaaagcga taagagggat ccgttccagc gatagaaaac
    46441 aagtgacact ctaccctggc agcgtgccaa atcgcatacc cgataaaaat tactggcaat
    46501 ttaaccgttt tgaattcgac caattcgagc ccaagcaact tgattatagc caagcgattc
    46561 cacacttcag aatggattcg gtgctacaat ttttattggc ggatatgttt gagtaaaatc
    46621 ttgttgcata tttccattaa aggtataaaa ttttatacat tatgaatact gtaatttccc
    46681 aacgaaaacc aattcactgg gttggatcaa ccttagatga tattcgtgaa tttccggata
    46741 acattaaaag agaactcggt tttgatcttg atttagttca gcaaggctta ttaccgaggg
    46801 attttaaagc gatggcaaat ttgggttcag gcgtaatgga aattcgagta aaagatccct
    46861 caggggcttt tcgcttagtg tatttagcta aatttaaaga tgcaatttac tgtttacacg
    46921 ctttccaaaa gaaaacgcaa aaaacagccc ctaaagacat tgctgtcatt aaagcacgct
    46981 atgctgccgt aaaggagtta gaaaatgaat aatattgata ctaaaattcg ccatactaca
    47041 gaagctcagg gtaatgtttt tgaagatctt ggtttcccta ttgatgaagc tcaaaaattg
    47101 aaatctgcca gtcagcaact gattgaaact aaactgatgc taatgaatga aatgagcaac
    47161 tggattgata aaaataatct caaacaatca gaagcggctt ctattctagg tgttagccgc
    47221 cctcgaattt ctgatatggt caatggcaag ttagaaaagt ttaccctaga taccttagtc
    47281 acttttgttg caaaaaccgg caaaacaatc caattgcaat tatcctgata tttgcaaaat
    47341 tttactcaaa ttcaaccgct tgttgctttt atcattcact aacaaggtta tttcaagtaa
    47401 aattgtgact aattttttat taataaacac aaattatggc aaaaaaacct aaagttgcat
    47461 caaatacgat tgcgttaaat aaacgtgcca gacacgaata tttcattgaa gatgaaattg
    47521 aagccggctt agagctacag ggctgggaag tcaaagcatt gcgtgccgga aaaggcaata
    47581 tcagcgatag ctatgtcatc tttcgccacg gcgaagcctt cttattcggg gcaatgatta
    47641 cgcctttgaa tatggcatca acccatattg tcagcgaccc gacccgcacc cgcaaacttc
    47701 tactgaataa acgtgagtta gactcactgt tcggtaaagt taatcgtgaa ggttatacca
    47761 ttgttgccac ctcaatgtat tggaaaaatg cgtgggtgaa agtaaaaatc ggcttagcca
    47821 aagggaaaaa actgcacgat aaacgtgaag atattaaaga ccgtgaatgg caagtggcta
    47881 aacagcgtat tatgaaaaac gccaatcgtg gctaaatgaa taattaccct ctccccttgt
    47941 gggagaggga cagaaaaatt gcgttcagca atttttcagg gaaaggggga tttgtaaaag
    48001 ttcaaggaaa aacaacgctt gccctctctc tgaaaaatat ttctgaacga aatatttttc
    48061 ggtctctctc ccataaaggg agagagtgaa acacaaattt aaactaagga acatacaatg
    48121 atcgaccaaa acctacttcg taccaattta gaagacgttg ctacagctct taaaatcaaa
    48181 cgtaatttta ttttagatgt agagcgagta aaaacccttg aagaacagcg taaaacgcta
    48241 caagttaaaa ccgaaacctt acaagcagaa cgcaacactc gctccaaaaa catcggtgcg
    48301 gcaaaagctc gtggcgaaga tatttcagct ttattagccg aagtagattc aatgggcaac
    48361 gaattagaca cggcaaaagt agaattggat aaagtacagg cagaaatccg tgagttgttg
    48421 ctttctgtgc caaacttacc ggcagatgaa gtaccactcg gtaaagacga tagcgaaaac
    48481 ttagaagtat tacgttgggg cgaaccacgt caattcgact ttgaagttca agatcacgtt
    48541 acccttggcg aaaacttaaa cggtttagat tttgctgccg gtgtaaaatt aaccgccagc
    48601 cgttttgtgg taatgaaagg taaacttgcc cgcttacacc gtgcattatc tcaatttatg
    48661 ttggatttac acactgaaca acacggctat gtggaaacca atgtgccatt tttagtcaat
    48721 cacgacactc tatacggcac aggtcagcta ccaaaatttg gcgaagattt attccatact
    48781 caaccattaa cagggcaaga tccaaacgag gtgcaacgcc cattcggttt gattccaacc
    48841 gctgaagtgc cagtaacgaa cttagtgcga gatgaaatca ttgatgaaga cagcttacca
    48901 ctgcgttata ccgcccacac cccttgtttc cgtgcagaag ccggttctta tgggcgtgat
    48961 actcgtggtt taattcgtat gcaccaattt gaaaaagtgg aaatggtgca aattgtcgcc
    49021 cctgaaaaat caatggaagc cttagaagaa ttaaccggtc acgcagaaaa agtcttacag
    49081 cttttaggct tgccataccg caaagtgcta ctctgcactg gtgatatggg ctttggtgca
    49141 gcaaaaacct acgacttaga agtttggcta ccggcacaaa acacttaccg tgagatttct
    49201 tcttgctcaa atatgtggga tttccaagcc cgccgaatgt ctgcacgttg taaagctaaa
    49261 ggcgacaaga aaactcgctt ggttcacacc ttaaacggct caggtttagc ggttggtcgc
    49321 acactggtcg ctgtgttaga aaactaccaa aatgccgatg gctctattac tgtgcctgag
    49381 gtgttaagac cttatatggg tggtttggaa gtaattaccg cttaagatta ataaatgaaa
    49441 ccaatctcag aaatggggtt ggttttttta ataaatctta tccctaatct ttttcaggat
    49501 aattcataaa aatttcagta actactcggc ggttttgcac tgtatctaaa cgaataggat
    49561 ttttcattct ccctaaacga aatgcaataa tggtgacttt tttcggttca tctattttat
    49621 ctaattgata gaataccatt atttcccgtt gataaaccgc tcgctttctg aaacgtaaat
    49681 ccttgcgaaa tgcgacacct gcttttggat aaaactgtaa accattgatg atattcgttt
    49741 gagtatgctc cgaaaataat ccatagaaaa taaactctaa tagattattt ttaaaatcaa
    49801 cactaaccat ctaactgctc ccaagcagtt aaatctcctc gtgataaacg ttcagcaata
    49861 tcagcataaa attgtttcgg tacttccctt tttacttggt attgagctga ttgttcttct
    49921 aataaatgtt cttctatcat cttgatttct tctgttgtcc actcttcatc ttctttatgt
    49981 acaacaaaat cggtatctac aatcacaata gacataccta gctccttcaa gtactggtta
    50041 tatattctgt attttgcctg ttctaaattc agctgtctag cttttctgtt actcacaatt
    50101 tgcaaatttt tcatcaaatt ccaccgcttg ccattcaaaa aaaggcgttt ttgcggtatc
    50161 ctatcggcaa ttttttcagt taaatttaaa ggttaaattt tatgcaacag cagtataacc
    50221 caagtgagat tgaacctaag gttcagcgtt attgggcaga aaataaagtt tttaaagcag
    50281 ttaaagacgt taccaaagag aaatactatt gcctttcaat gttgccttat ccgtcaggta
    50341 agctacatat ggggcacgtt cgtaactaca ccattggtga tgtagtgtct cgttatcagc
    50401 gtatgatcgg taaaaatgta ttacagccga tgggttggga cgctttcggt ttaccggcgg
    50461 aaggtgctgc ggtgaaaaat aataccgcac cggcaaaatg gacttacgaa aacatcgaat
    50521 atatgaaagg tcagcttaaa atgttgggct tctcttatga ctgggatcgt gaagtcacca
    50581 cttgccgtcc ggaatactac aaatgggagc aatggttctt cacagaactt tataaaaaag
    50641 gcttagtgta taaaaaaacc tcaaccgtaa actggtgtcc gaatgatgaa actgtgcttg
    50701 ccaacgagca agttcacgaa ggttgttgct ggcgttgtga caccccagtg gaacagcgtg
    50761 aaattccaca atggtttatc aaaatcactg actatgctga agaattactc aatcagttag
    50821 ataatctccc acagtggccg gatcaagtaa aaaccatgca acgcaactgg atcggtcgtt
    50881 ccgaaggggt agaaatcacc tttaaaattg ccggttcaaa cgtagaatta ccggtttaca
    50941 ctacccgtcc ggataccttc ttcggcgtaa gctatgtggc gattgctgcg gctcacccat
    51001 tagcagaatt agctgcacaa aataacccgg cattggctga atttatccgt gaagcgaaaa
    51061 acaccaaagt ggcagaagca gaattagcca ccatggagaa aaaaggaatg gcaaccggct
    51121 tgttcgccat tcacccgtta acaggaaaag aagtaccggt ttgggttgct aactttgtgt
    51181 taatgcacta cggtacaggt gcggtaatgg cggttccggc tcacgatgag cgtgactttg
    51241 aatttgcaca aaaatacgat ttgcaaatta atcaggtaat tcaaccgctt gatggctcag
    51301 agtgggattt cagcaaagcc gcttacaccg aacacggtaa attaatcaac tctgccgagt
    51361 ttgacggctt ggaatttgat gtggctttca ctgcgattgc cgataaatta gaggcaatgg
    51421 gtgtaggtaa acgccaagtg aatttccgtc tgcgtgactg gggtgtttct cgtcaacgtt
    51481 attggggtgc accaatccca atgatgacca cagaagaggg cgaagtggtt accgttccat
    51541 tacaagattt accggtgatt ctccctgaag atgtggtaat gaacggcgtg caaagcccaa
    51601 tcaaagccga cccagagtgg gcgaaaacca cttacaacgg caaaccggca ttgcgtgaaa
    51661 ccgatacctt cgataccttt atggagtcct cttggtatta tgcacgttat acttgcccac
    51721 aatatcacga aggaatgtta gattcagacg aggcaaacta ctggctaccg gtcgatcaat
    51781 atatcggcgg tattgaacac gccacaatgc acttgctcta cttccgtttc ttccataaat
    51841 tgttgcgtga tgcgggtatt ttaaattcgg acgaaccggc gactaaactg ttatgccaag
    51901 gtatggtgct tgccgatgcg ttctactaca ccagcccaac taacgagcgt atttgggtca
    51961 gcccgacaca agtcacctta gaacgtgatg agaaaggtcg tatcatcaaa gcaaccgatc
    52021 cacaagggcg tgagctggtt cacagcggta tgactaaaat gtcgaaatca aagaacaacg
    52081 gtatcgatcc gcaagaaatg gtggaaaaat atggtgctga cacagttcgc ttgtttatga
    52141 tgtttgcctc ccctgcggaa atgacattag aatggcaaga atccggcgtt gaaggggcaa
    52201 aacgtttctt aggtcgtgtt tggaatttag tttatagcta tgcccaaaat ccggcaacga
    52261 ctgcattaga tgtgaatgcc ttagacaagg atcaaaaaga acttcgccgt gatgtacaca
    52321 aaacgattgc taaggtgagt gatgatattg gtcgtcgtca aaccttcaat acagcgattg
    52381 ctgcggtgat ggaattgatg aacaagctca ccaaagcccc acttgaaacc gaacaagata
    52441 aagccgtaat ggcagaagct ttaagtgcgg tggtgcgtat gctttaccca atcacgccac
    52501 atatctgctt tgagttatgg caagtgttag gtaatgaaca aaccatcgat tttgcccctt
    52561 gggtacaagc cgatgaatcc gcaatggtgg aagatgaaaa attagtggta gtacaagtca
    52621 acggaaaagt gcgtggcaaa atcactgttt cagctactgc tacggaagat gaagttaaag
    52681 ctatcgctaa agccgatcca aacgttgcta aattcttaga tggtcagcag attgtaaaag
    52741 aaatctacgt tccatttaaa atgttgagct ttgcggttaa ggcgtaacaa acacactctc
    52801 ccttatatgg gagagagacc gataaatatt tcgtgcagaa atatttatca gagagagggt
    52861 acaagcggtt attttcttgg aaaattttgc aaaaaatagc cccctctccc tgctttttct
    52921 tctaaacgaa gaaaaacctg tccctctccc acaaggggag aggggaataa acaaggaaat
    52981 ctcattatga ttaaaaaact ctctctcatc gctgtttttg ctcttaccgc ctgcggttgg
    53041 cactttaaaa acaatgaggt attacctgaa tcgttcagaa cattaacctt tgaaagtgca
    53101 gatcaacaca gcgaaatgtc tcgaatttta cgcaatcagt tacaactaag cgatgtaaaa
    53161 ttagtgccta gcacggctaa tgtggcaaaa ttacgtttgg tttcaacctc aacagacagc
    53221 aaagtggttt ctgtgtttaa acaagctcgt gaagcagaaa aaatcttaac gctaaacgtt
    53281 gatgcgattg ccgatattcc aaataaaggg caataccctt tagaagtttc ggttcatcgt
    53341 actttctttg atgactctcg tgcagctttg gcaaagtctg ctgaaaaaga gatgattatg
    53401 aaagatatgt atgaacaagc ctctcgccaa ttaattatca aaatggcggg cttaaaaaaa
    53461 gaactctcaa aataatcatt gtaggggcga aatatgtttc gcccattgtt tatctgtatg
    53521 caaaaaatct ttccggaaac acttcaattt tcattaaaca aaggactaca gcccttttat
    53581 ctattaacag ggaatgatct gctattggtg aatgaaacca aagatgccat tattcacacc
    53641 gcccgtctca acggttttga tgaaaaaaaa gaagttgaaa tcaaaaacga tactaactgg
    53701 gaagaacttt tcgaagcagc tcaatcaatg ggattgtttt ttgcacgcca aattatggtg
    53761 ctgaattttc cggattcccc cacagcgaca cagtttaaaa aactggctga gctttgtgcc
    53821 tttattcata gtgatttgct ctttatcctg cacttaccta aattttccaa aacaatggaa
    53881 aaacaggctt ggttcacgca aattgagcta aatctcgtgc aaattaactg ccaaacaccg
    53941 gaacttagca aacttccaca atgggtcagt catcgagcaa aagcgatgaa tttgcaaatt
    54001 gaaaatgaag caaaccaact cctttgttat agctacgaag gcaatctact ggcgcttaaa
    54061 caggcattac aactgctaca actcaatgca actgatggaa aaatcacgct gacaaaagcc
    54121 caagaagtgg ttgaacactc cgcccaattt actccatttc aatggattga tgcattattt
    54181 gaaggaaaaa tccaaagagc tcaacgcatt ttgtaccatc tgcaaaatga agaagtacaa
    54241 gcggtcgttt tattaagaat tgtgcaaaaa gagttgatga ttttactcga aatcactcgc
    54301 aacccaaccg cagtcgtttc cagcgaacaa tcacttttta tcggtaattt acgaacagaa
    54361 tttgaccgct tgaaaatttg gcaaaaccgc agaccttttt acaaccagat cactcaacga
    54421 ctgacttacc aaaaacttta cgccctaatc caacaactgg ctgaattaga gcgtaaggtg
    54481 aaacaagaat ttagcgatga tatttggcaa gaattagagc gtttttccgc tcaatttacc
    54541 taactaatac ttttctaaat cttcgctaaa caactccgct tcttcactgg cgatagagtg
    54601 cttttctgcc gcccaatcgc ctaaatcaat aatttgacaa cgctcgctac aaaacgggcg
    54661 gtatttactt tctttactcc acaccacttc tttttcacaa gtcgggcagt ttacaatagt
    54721 ttctggcatt ctttttcctt ttttgctaat gctaagtatt tataatgtaa ggcttgaacc
    54781 tgctctttaa ttaaaagcaa gccctgttca aatggcaagt tattttcaat cacatcatca
    54841 gcataactta atctttcttc acggctgact tgggctgcca taatattttt aatggtttca
    54901 attttactgt tatcacgttt ggttgctctt tccagttgga tttcaggaga aacatcaaca
    54961 accaatatac gatcacaata ttcggtgagc ttattttcaa ttaaaagcgg cacgacccaa
    55021 atcacataac aagcggtcga ttcttgcaat ttttttacca tttcttctcg aatggcgggg
    55081 tgaagtaaat tattgagcca cgttttttcc tcttcattgt taaacacaat ttggcgaagt
    55141 ttagtgcgtt ctaatgcttt ttcagcggtt aagatctctt caccaaaatg ctctacaatc
    55201 ttggctaaaa gcggtgtacc cggttcaaca acttggcgag ccaccacatc agcatcaatt
    55261 acctctaccc caagagctga aaataaatca gacactgtgg ttttgccact gcctattcca
    55321 ccggttaagc ctacaacgta agtcataaaa attgattcct caaaataaaa acaaaccaat
    55381 tctagtaatt aatccctctg ctttcaagca ttagcaccag caacatcgct gtgctaataa
    55441 acggaataaa cgccaatttt gctaatttct gctttttcat tagccaataa gccaagtaat
    55501 aaccaatccc tagcaggctg gcggttaata tcaataagag cattttttcg agccgaaaga
    55561 gtggggataa cgcaaccaat aacaacatat cgcccgagcc aaatgcctcc tttttaaaca
    55621 taagctgtga aaccaagcca atcaacaggc aaaaagcaag ggtaaaggta aaagtttggt
    55681 gttggaaatc ggctaaactc tcccataaca ccaacaaaaa tataagcacg aggtagcgaa
    55741 tatccgttag gtaatagcac atatccagca gtgataaaaa acagagcaga ataaaaatcg
    55801 tgccgataat agggctttcc gagcagagca taatcaatgg aaaaaggaga aaaaatagat
    55861 ttgccgatcg gggttgtttc ggttgtagca ccgattgagc caaaaactgt tgctcggtta
    55921 agccaatatt cactaatgaa gttgtttctt ggtaaatttg gcgattgact cgaatggcaa
    55981 atcgagggat ctccgctttg agccaaaccg caatgaagag ggaaaacagt attaacatcg
    56041 ctactccacc aaagccccca tatcaaaaat cggtaaatac agcccaacaa taatagtgcc
    56101 gacaatcacg cccattatca acattagcat cggttctaat agctgagaca aaatatcaat
    56161 ttggtaatct aatttttgtt ggtacatctc actaatatgc tcacacattt tcgccacatt
    56221 gccacttttc tccccaacct caagcatttg tgccatctca gcaccaaaca cattcgggtt
    56281 gatcccttgt gaaaatttgt agccttgttg taacaaatta agcatagtgc caatttcttg
    56341 ctgtaaaatc gggtcatcat ttttctcgga taaaaacgac ctcaaggcaa catcaagcgg
    56401 aatatgagca ttcagcatta aggcaatatt ttggctgaaa aagataatgc gagattgctc
    56461 aataattcgg ctaaacagtg gcattttagc ccatagagcc attttccact ttgcgactaa
    56521 cctgctcttt tttgcaaaaa acaggtaaaa aatgaccgct agtagtaacg tgccaagtaa
    56581 tactgtgcct tgctcaatca agcattcgga aagggtaaat aaaatatcgg taatgagggg
    56641 taaagttttg tcttttgagc cataaagttg ggcaaactgc ggtacaatca aaaccaatag
    56701 cccgatagat aaagcgagcg aaatcagcaa cacaatcacc gggtaaaaca ggattttctt
    56761 cacttttttc gccaattttt ccaatttcgc tcggctttca gctaaattag tcagcataat
    56821 gcccagtttt ccgctttgtt cgcccatttt gattagctga atttcctgat tggtcacaaa
    56881 ttcacccaat ttctccaacg attgtgaaaa agcatagcca ctttcaatat gctgaatcag
    56941 ctcattaagc catagataaa ggcggatatt tcggcagttt tgcaacaaca tagataatgc
    57001 ctgttttaac ggcatggcag aattaaccaa caatgcaagc tgtgatagca agctattcac
    57061 ctcttctttt ttcgggtttg ctgaaagcac aaaatttcgg ctaatccgaa tatgctgata
    57121 accttgtgcc agcaaaaggt tttccaacat gtctcgattc gttgccaacc gcttgccccg
    57181 ctgtttttgc ccaaatcggc tctgggcttg ccaatgaaat tcatagattt tcgtcattgc
    57241 ctaagcaatt tctctttttg tggttcaaaa tgaatatctg aggcgttgtg ttgcaaacag
    57301 aacttaaata aattctctaa aatttggata atcggatcgt ttctatccac ttgttccgaa
    57361 tgagccaatg aatacgccgt attctcctca taaatctcac tctgccgact actctgctca
    57421 ggcgaaaggg cattgagtaa aaacttcaat tcatcggagg aaatcaaaac aggctcaatc
    57481 tgtttgtggt agataaacgc aaaaatctca caggcattga gattttgcat atcatcaatc
    57541 cctagccaaa gctgttcttc tgtttcttgc agcggaatgg ctaaatatcg caataaaatc
    57601 tgcttttcat tgcaattttt ctgccactgc tctgctgaaa tctcgatgaa cctttggctg
    57661 tttaaatccg ttaccgaata ctccattttg atttcctcac ctcaaattag ccgtttggtg
    57721 taacagttgt gctacagaaa ttagctggaa ataggctcgt atcattgcca ctacaacttg
    57781 ccgtccaact aatcgtatta tttgagaacg acggtgttaa ggtatagcca taaccattca
    57841 gagagccttt gccggttacc gtaatcacgc cttttgttac cgcaattgag tttaggtatt
    57901 tagtggtatt actactggtt ttattcgcct gaatcccatt cgtgccaccg gagcagttat
    57961 ccaacccgcc actgttgtaa atacagactt caacgtctga tttatacgaa gcagatgctt
    58021 gtaataactc cgataacgcc gccttttggg tgtatgagtt ataggaaggg atcgcaatag
    58081 tggcaagaat ggcaataatc gcaatcacga tcatcaactc aatgagggta aatgcccgat
    58141 gcagttggcg aatgccaagc ggtctaaaat gtacaatttt ttgcatataa attccttata
    58201 aattgcacca acaaattgtg gcgaatcaag tgtgcaaatt ttttgcctgc tttgcgaccg
    58261 gcaaatttta atttttcgac gcagatcgaa aaaataaaat ttttatctgt ttatccatac
    58321 agttttttgt tagaatttgc caaatttact caattaggaa tcaagaatgg caaaagcacc
    58381 taaaaccgct tatgtttgta acgattgcgg ggctgaatat tcccgttgga tggggcaatg
    58441 taaggaatgt aaggcttgga ataccatcag tgaagtgcgg ttgatttcca gcaaagaagc
    58501 ggcgaaatct gaccgcttta gcggctatgc cggtgaaacg tcaggcaaag tacaaacgct
    58561 gtctgacatc agcttgcagg aagtgcctcg ctttagcagt ggctttaacg agctggatcg
    58621 tgtactcggt ggcggcgtag tgccggggtc agcaattctg atcggcggtc acccgggggc
    58681 ggggaaaagt acgttattac tgcaagtaat gtgcggttta gcccaacatc tgccaacgct
    58741 gtatgtcacc ggtgaagagt cgttacaaca agttgcaatg cgggcaaatc acttaggctt
    58801 accaacggca aatctgaaaa tgttgtctga aacctctgtc gagcatattt gcaatattgc
    58861 agatcaagaa aagcccaaaa ttatggtgat tgactcgatt caggtgatgc acttgtcgga
    58921 tattcagtcc tcacccggca gtgtttcaca agtgcgtgaa tgtgcatctt tccttacccg
    58981 ctacgccaaa acccgccaag tggcgattat tatggttggg cacgtcacta aagatggcac
    59041 gcttgccggc ccgaaagtgt tggaacacgc catcgatgct tccttgctgt tagaaggcga
    59101 atccgattcc cgtttccgta ctttgcgtag ccagaaaaat cgttttggtg ccgtcaatga
    59161 attgggcgta tttgcgatga ccgaacaagg gctaaaagag gttaaaaacc catctgcgat
    59221 ttttttaagc cgtagcgaag agcaaacgcc gggcagttcg gtgatggtgt tatgggaagg
    59281 aacacgccca ttgttggttg aaattcaagc cttagtcgat cactcaatgc tggcaaaccc
    59341 tcgccgtgtg gcggttggct tagatcataa ccgtttatcg ctattacttg cggtgctaca
    59401 ccgacacggt ggcttgcaga tgtcggatca agatgtgttt gtaaatgtgg tcggtggggt
    59461 gaaagtcacg gaaaccagtg ccgatttagc cttaattttg gcgttaattt ccagcttccg
    59521 taaccgtcca ttgccgcaag atttggtgat ttttggggaa gtcggcttag caggggaaat
    59581 ccgcccggtt accagtgggc aagagcggat cagcgaagcc gcaaaacacg gctttaaacg
    59641 agcgataatt cctcacggca atgtcccgaa aaaggcaatt aaagatatgc aggtgttcac
    59701 cgtgaaaaaa ctcagtgatg cgttagatat tctgtataat ctctaaaatc aagaaccgct
    59761 tgtaagtctg tcttacaagc ggtctgtttt aggtaaaaat ttacgaatgt gcggcagttg
    59821 gtctattgcc tttggaaata tagtataaat taatacacac caccaacgca tttaagccgg
    59881 tgaccggaat cgagccaatc agcaaaccat aaacaacgaa acaggcacaa cccagcgaat
    59941 tcaccacccg cagtttaatc acatctttta ataaaaaaga acaggcaact aaaatcatcg
    60001 ccacatagcc gagtatttca acatagtcca tttagaacct cctcaaataa aataaactgc
    60061 cgatatttta aaggctgttt ttttatttgt atctagctct aaaaatagca aaggtttgcg
    60121 ttcacatttt tacttttaac cgcttagtta ttaaacagat tttcgttcta aacacataaa
    60181 acggcaacgg aaagggttat tttcatcaat ttctgaccac ttttcttcta ctaacgccca
    60241 attttgttca tcaaattcaa agaacgtatc cccttcaatg tctgcttgaa tctcagttaa
    60301 ataaagtctt tctgctagtg gtaaggcttg cttaaacagt tcccccccac caataatcat
    60361 tatttcagct gtatttgcaa aatttttcgc taattcaacc gcttgttcga gcgattgtac
    60421 cgcataagcc ccttccaccg taaaacctga acgggaaaga ataatattag ggcgttttgg
    60481 caataacctg ccgatagatt cataggtttt ccgccccata atcaccggtt tgccgagcgt
    60541 gttttggcga aaccaggcta aatctaccgg caaatgccac ggcatttggt tatctttgcc
    60601 aatcaccttg ttgattgttc gggcaacaat aatgctgatt ttcatttttt ctcctgttat
    60661 gcaaattggt ttgattttat atcaaattaa gcgtgatttt acaccctaaa agtgatactt
    60721 ttggcaacat tatttttagt tacaagtgaa cagattatgt caaaaactat cgtgataaaa
    60781 tttggcacca gcactctcac acacggcact aaaagtttaa gccgtcctta tatgttagag
    60841 ctggtaaagc tcaattacac caacagcatc gtgtgattgt ggtgacatcc ggagctgccg
    60901 ctgccggtcg ggactattta ggacaccctg aactccctaa aaccttagcc tctaagcaaa
    60961 tgttagcagc ggtcgggcaa agtcagctca ttcgagtgtg ggaaaattta ttcgatattt
    61021 ataatatcca tatcgggcag atgctcttaa cccgagccga tctggacgat cgtgaacgtt
    61081 tcctcaatgc ccgtgatacc cttgatgccc tgcttgcaca aaaaatcatt ccggtgatta
    61141 atgaaaacga tgccgttgct accgaagaat ttaaagtagg cgataacgat aatttatcgg
    61201 ctttagttgc gattttggct caagcagatc agctctattt attaaccgac caagaaggct
    61261 tattcagtgc cgatcctcgc tcaaaccctg atgctaaatt gctctcggtg gtggaaaaaa
    61321 tcacgcctga aatccgccaa attgccggtg gtagttcaac cggtttaggc acgggcggaa
    61381 tgagtaccaa aattactgct gctgatattg ctacccgctc cggtgtggaa accatcatcg
    61441 cctccggttc tcgcccaaat gtgttagttg atttagcaaa cgggcaaaac atcggcagta
    61501 aatttttagt ccaatctgac cgcttggaag gcagaaaacg ctggttattt gctgctccgc
    61561 aagtgggtga aattgtggta gatttcgggg cggaacaagc cttgcttcaa cataaatcat
    61621 tactgccggt gggagtttct gccatcaaag gcgaatttac tcgaggtgaa gtaatcaaaa
    61681 ttttcagcca agacggcaaa gccttagcac tcggcattgc ccgttatagc agtgaggcat
    61741 tgctgcgaat taaaggtaag aaatcaaaag aaattgaatc gctccttggt tatgaatttg
    61801 gttctgttgc agtgcatagt gacgaaatgg tggtgtatta atggaattgg gaattgatgt
    61861 tttagcaatc ttgtttgccg ttgcgaccct tgccggcttt atcgatgcca tcgctggcgg
    61921 cggtggctta ctcactattc ctgcattaat ggcagcaggg cttcctccgg caatggcact
    61981 tggcacgaat aaattacagg cgtgtggcgg atcactctct tcctcactct attttattcg
    62041 caaaaaagct gttaatttaa aacaaatttg gttgctaatt ctatgcactt ttttaggctc
    62101 tgccgccggt actatttttg tgcaaatgat caatgtcgat ttcttaaaaa cattgttgcc
    62161 tttcttaatt ctgattatcg gcatctattt tttggtcagc cctaaaattg gcgatgaaga
    62221 tcgtaaacaa cgcattagct ttaccctatt tgcctttacc gccgctgtcg ctctcggttt
    62281 ttatgatgga atgttcggac cggcaaccgg ctcttttatg actctggcat ttattttgct
    62341 gctcggcttc aacctctcta aagccgtagc acacgccaaa gtgattaatt ttacctccaa
    62401 ctttgcctca ttaattttct ttacgcttgg tggtgcggta atgtggaaaa tcggcttaat
    62461 tatgatggtc gggcaattta ttggcggcac actaggtgcg aaaatggtga tgacaaaagg
    62521 caaaaaatta atccgtccga tgctagtgac tatgtctttt atgatggtcg gcaaaatgct
    62581 ctacgagcaa ggaattttta attaacaatg aataaagcaa aacgtattga gattttaacc
    62641 cgtttacgca atgaaaatcc aaaaccgaca actgaactca attacagtaa tccgtttgaa
    62701 ttattaattg ccgtgattct atccgcccaa gcgaccgata aaggcgtaaa taaagccacc
    62761 gataagctct tccctgtcgc caacacgcca caagcgattt tagatttagg cgtagatggg
    62821 ctaaaagagt acatcaaaac tatcggctta tttaacagca aggcagaaaa tattatcaag
    62881 acctgccgag atctgatcga aaaacataac ggcgaagtgc ctgaagacag agatgccctc
    62941 gaagcccttg ccggtgttgg cagaaaaacc gccaatgtgg tgatgaatac cgcattcgga
    63001 caccctacga ttgcagtcga tacccatatt ttcagggtgt cgaaccgcac gaacttcgct
    63061 cccggcaaaa atgtagttca ggtagaagaa aaactgctca aagttgtgcc ggacgaattt
    63121 aaagtcgatg ttcaccattg gttgatttta cacggacgct acacttgcat tgcccgtaag
    63181 cctcgttgtg gttcttgtat tattgaagat ttatgtgagt ttaaagagaa gacggaataa
    63241 cattatctgg tggtatttaa tgaataactc ccctctttag aaaagtaggg gctgggggag
    63301 atttgatact atttcaacat ttcgtatgag cgtatagaaa ttctgccaaa tcttccctat
    63361 cccctctttg ctaaagaggg gaactagatc gagcgtaaaa tataacaagc ggtcattttt
    63421 ttgagatttt ttgcaaatgg atatttattt agtcggtgga gcagtgcggg atcaacttct
    63481 tgggctgcca gtgaaagata gagatttttt agtggttggc gcaactgccg aacaactttt
    63541 agcccaagga tttcaacaag ttggggcaga ttttccggtg tttttacacc ctgaaaccaa
    63601 agaagaatat gcccttgctc gccaagaacg caagaacggc aatggttaca acggctttat
    63661 ttgcgatttc tccccaaacg tcacgcttga gcaagatttg atccgccgag atttaaccat
    63721 taacgccatc gcccaagatg aaaacagcac actttttgat ccttatggcg gtgtgcaaga
    63781 tttagaaaat cggctactcc gccacgtttc tcctgcattc agcgaagatc cgctacgggt
    63841 gctacgggtt gcccgctttg ccgcccgttt tcattcattt ggttttacca ttgctcctga
    63901 aaccctgaaa ttaatgcgag agatggtaca aagcggtgaa ttgaaacatt taaccgctga
    63961 acgtgtgtgg ttggaaacac agaaagcctt tgaaaccgat aatccgcacg tttattttga
    64021 cattttacgc ttaattgggg cattaaaagt gctattccct gaactggatc gtctgtttgg
    64081 cgtaccacaa ccacctcaac accaccctga aattgactcc ggcaaacaca ctctaatggt
    64141 gctacaacag gcaaaaagac ttgcaaaaaa agcggaaaat ccgaccgctt tactctttgc
    64201 agccctttgc cacgacttag gcaaaggctt aacgcctgct gatattttgc ctcatcacta
    64261 cggacacgaa gtcaaaggca ttcaaccaac ccgagagtta gccaatcggt taaaaatccc
    64321 aactgagatt aaagattttg cccttttagt gaccgaatac cacacgcatt gccataaaat
    64381 ggcggaactt cgccctgaaa cggtaataaa actgtttaac agcctagatg tgtggcgtaa
    64441 accaaaccgc ttttttgatt tcctgttcgc ctgtgaagcg gatgctagag ggcgattagg
    64501 ttttgaacag cggaattacc cccaacctga attggcgaaa aaatattacc aagccgcaat
    64561 cgaaattgat gtgcagcaag ttattcaaga cggttttgaa aaacaagcaa ttcgggaaga
    64621 gctgaataaa cgcagagtgt atgcggtaag aagcatcaag ctagatagcg acctaataaa
    64681 ccattaggtt atccgccact ttctcaaaat caattcccaa agttcaagtt ggttaaatgt
    64741 atggattctt taaaaggtgg cgttatttta gtgaatttat aatgttccta tgctcttgat
    64801 tgttgtagcc acaatttcag ggtaaagatc agcaataacc caatgccgaa attggcaata
    64861 gtgaagccgg ctaacccaat aaaagataaa ggttcaaatt gataaaattc aatcgcacct
    64921 cttgccattg cagctaaacc aaatgaaaat gcccagaaac ccatcgagaa gccattttca
    64981 gctatccatt tgaggtttcg taaaataaaa cagaattgta agaatccata tccccataac
    65041 atttttgcca acaagtctaa ttctccaccc atagaaaaat aggcagaagc gcccacaaat
    65101 gccggagcaa gaacaattcc taaagatggt ctagcaatcg gaaaaagcgg actaagccga
    65161 attctttgta acatagtggg ttcatatact aaccaggaaa ttatgccaat gcctaaaaat
    65221 aaagatgcaa tttcactgta gccaattaag cttaatgaac ttgccatagt gaagctccct
    65281 gcaattggcg gtaggtaatg taccgggtgt agcgtttccg gcaaaaattg tgtgcctttc
    65341 cataatccac caataataaa aaccaagaaa attaaatgca caatgacgcc taaaaaaatc
    65401 aatagttcgc ctaaataaaa atcccataca tagagcacat caccgcttat catggttgtc
    65461 attgtcacta aggaaaataa acaacattgc actgggtgca taaattctgc tttaatctgc
    65521 tcaaaacaaa aaaacacacg atacacataa cagcctaata aggctaccca aagtatgact
    65581 gacgttccag caatgatatt accaattgtt gtagcataag gagtgatagg cgttgcattt
    65641 aaccaggcaa ggcctaacgc ccccagccct aatggcattg caaaaaagcc tgtagttatt
    65701 ggaaaaggtt tagattcact cataaattta tcctcatatt gaaataatgc ataactgtat
    65761 tcggctttat aacagtcata tgtaaaaaat tttatttttc taaccgcttg taataagaaa
    65821 aacctaaagc acttgcttta ggttcctact actattcata ctcttctagc cagatagtta
    65881 aaatcgcttc aagaatatgt tcatttgatg cttccggatc atcatcgaaa tcttccattt
    65941 cacaaatcca tttatgcata tctgtaaaac gaaccgtggt cgggtctaaa tccgggttca
    66001 tatcatacag attttcagcg atcattcggg tatctgtcca tttcattagt gcgctgcctc
    66061 atttgcgtga tttaaattat attttggaat ttcaacaacc aaatcttctt caccaacaat
    66121 acattggcaa cttaaacggc tgtctatttc caatccccaa gctttatcca gcatatcttc
    66181 ttcttgatct gaagtatcat ttaacgaatc aaaaccctca cgaattacca cgtggcaagt
    66241 ggtacaagca caagaacagt cgcaagcgtg atgaatttca acgcctgctt cgtgtgctac
    66301 ttctaataaa ttatctccgg ctttagcttc aacaaccata ccttccgggc aaaattcttc
    66361 gtgtggaaga aaaacaattt ttggcatttt aaagtttcct tattactaat cccattcaat
    66421 attatccaga tgttcgccga tgaagtttaa aatctcttcc tcattttcaa ccagataaac
    66481 aataatcttc tttaattccc ttgctttctc tttacttttc tcggaaagcg gataggtaac
    66541 ataataacat cctacgtccg gatcttcttc taataactct aataggcttg gacgataaat
    66601 actaagataa gcccgtaaaa atgcagccca gttataaccg ttcatatagg caacatcata
    66661 ttcagtatta atccgctcgc ccaactcaaa aatgcggtta tcctctaaat cgaattcaac
    66721 cgcaacggtt ctgaattgtt ctgaaatctc ggtttttaca tagttagaca tactgcctcc
    66781 ttatgctaaa tcgtccattt ttttaccggc taatgctttt tgaattgata aattcatacg
    66841 ccgtgctgca aattcttgcg tagctaaatc cacctctttg ataccttgct gaattgcaaa
    66901 gcgatcagta ccttctttta attcgattaa acgggctaat tgtgcttcaa tcgcttggaa
    66961 ctcctccaca ctcaacactg cagagccatc ttctttcaat gccgttacca cgctgtcaat
    67021 cactcggtcg gcttctactc gctgttcaac taactggcgg gcttccatat cttctttggc
    67081 atttgccatt gaggatttaa tcatctgcgt aacttcttca tcggttaagc cataagacgg
    67141 tttgatttga attgaagcct gcactttggt cgatttttcc attgcagtca cgtttaataa
    67201 accgtctgca tcaacttggt aagttacccg aacctgtgca acccctgctg ccattgccgg
    67261 aatgccacgc aaagtgattt taccgagaga gcgacaatct tcgactaatt cacgctcacc
    67321 ttgtaaaacg tggattgtca tcgccgtttg accgtcttta ccggtagtaa actcttgagc
    67381 tcgagctact gggatagtag tgttgcgtgg aataattttc tccaccaaac cacccatcgt
    67441 ttcaatacca agcgaaagtg gcacaacatc aagcaacaac atatcggaat ccggtttgtt
    67501 tccaactaaa atatccgcct gcactgccgc accaatggca acaactttat ccgggtcgat
    67561 agaggttaat ggcgttttac cgaaaaactc gccgacttgt tcacgcacaa acggtacacg
    67621 ggtcgaaccg cctaccatta ccacttcacg aacctcttct gcttcaactc cggcatcttt
    67681 caaggctcgg cgacaagtca tcagcgagcg ttttacaagc ggttgaatta gctcattaaa
    67741 ttgcgaacgg cttactacgc ctgtccaatt tgcaaatttc acttcaaatt caaccgcttg
    67801 cgaaagtgcg actttggttt gagttgccaa agttaataat tcacgctgct cgcttgccgt
    67861 ttgaggtttg taatttgcct gttcagcaat ccattccgct aataggtggt cgaaatcatc
    67921 gccaccgagt gcggtatcac ctgcggttgc taatacttca aacacacctt tgcgtaaacg
    67981 caaaatagat aaatcgaaag taccgccacc taaatcgtaa acggcaatca caccttcttg
    68041 tccgctttct aaaccataag caatcgctgc tgccgttggt tcattgagca aacgtaatac
    68101 atttaaaccc gcaagacgtg cggcatcttt ggtactttgg cgttgtgcgt catcaaaata
    68161 agccggtacg gtaattacca cgcctgaaag ctcaccggct aaacgctttt cggcaaattg
    68221 tgccaagtgg cttaaaatat ccgccgaaac ttcaatcggg cttttattac cttgcgctgt
    68281 ttggattaaa ggtaaaccgt tttcgctcgc gacaaattga taaggtaaat tttgataacg
    68341 ttgctgaaca tctgccagag aacgcccaat gagacgttta gctgaaatga cggtattttt
    68401 cgggtcaagt gcagctttgg caaaggcttc aatcccaact gttttttctg tttccgcata
    68461 atgcactact gacggcacta atgctctttc ttgttcatca agcaatacct gagtctgccc
    68521 gctacgcaca gttgccacta atgaattggt tgtacctaga tcaattccta ccgctaattt
    68581 atgttgatgt ggtgcagcgg tttgaccggg ttcagaaatt tgtaataatg ccatttattt
    68641 atctctttat ctttctaact tagttctcta ttgtattaaa tggagtgaaa tatattgttt
    68701 aagagaagct gga
//
LOCUS       DANMBQ010000003        53260 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.003, whole genome shotgun sequence.
ACCESSION   DANMBQ010000003 DANMBQ010000000
VERSION     DANMBQ010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 53260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 53260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..53260
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.003"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..244
                     /locus_tag="PXE92_000147"
     CDS             <1..244
                     /locus_tag="PXE92_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759442.1"
                     /translation="YSTQDDGSLNAKYVVGTGDDTDGEVTNFVIITSEYKYIDAQSAK
                     EITDAPLTKEDIGKTPTQIMLGRIYKYLKETGQIVV"
     gene            393..463
                     /locus_tag="PXE92_000148"
     tRNA            393..463
                     /locus_tag="PXE92_000148"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:421..423,aa:Arg,seq:tct)
     gene            complement(623..1921)
                     /gene="purA"
                     /locus_tag="PXE92_000149"
     CDS             complement(623..1921)
                     /gene="purA"
                     /locus_tag="PXE92_000149"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDL5759443.1"
                     /translation="MGKSVAILGAQWGDEGKGKIVDLLTDRVKYVVRYQGGHNAGHTL
                     IINGEKTVLRLIPSGILRDNVTCLIGNGVVLSPEALMKEMGELEERGINVRERLKISE
                     ACPLILPYHVAMDHAREAALGKNKIGTTGRGIGPAYEDKVARRGLRVSDLFDKEHFAA
                     KLKDILDYYNFQLVNYYKVEAVDYQKTLDDVFAIADVITGMVADVTTLLHEARENGDN
                     ILFEGAQGTMLDIDHGTYPFVTSSNTTAGGVATGSGYGPRHLDYVLGIIKAYCTRVGS
                     GPFTTELFDDVGAEIARKGNEFGAVTGRPRRCGWFDAVAVRRAVQINSISGFCMTKLD
                     VLDGFKELKICVAYKMPNGKIVEYAPLAAKDWEGVEPIYETMPGWSENTFRVTKREDL
                     PQAALDYIKRIEELVGVPVDILSTGPDRVETMILRDPFAA"
     gene            complement(2095..2982)
                     /gene="hflC"
                     /locus_tag="PXE92_000150"
     CDS             complement(2095..2982)
                     /gene="hflC"
                     /locus_tag="PXE92_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HDL5759444.1"
                     /translation="MRRLLVPILAVVAFVVLQAITIVNEGERGIMLRFNKVHRDSDQK
                     VVVYEPGIHFKVPFIDSLKVLDARIQTLDGQEDRFVTVEKKDLLVDSYVKWRISDFGQ
                     FYTSTGGDYQKAADLLRRKVGDRLRSEIGSRTIKDIVSGSRGELMAGAQKALNAGEDG
                     AERLGIEVVDVRVKQINLPNEVSSSIYQRMRAERDAVAREHRSQGNEKAEVIRAEVDK
                     KVVLILANANKTAQALRGEGDAQAAKLYSEKFGNEPEFYSFIRSLKAYEDSFAEGQNN
                     MMLLKPNSEFLRFMQAPTK"
     gene            complement(2985..4208)
                     /gene="hflK"
                     /locus_tag="PXE92_000151"
     CDS             complement(2985..4208)
                     /gene="hflK"
                     /locus_tag="PXE92_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HDL5759445.1"
                     /translation="MSWNESGNQQDPWGKPGQKKAEPKPEQQEQGSQQEPTNNQRNEQ
                     QPPDLEEVFSSLLKKMGGGKGPNNSSNQPSASLGKFLPVVLGLAAVVWVGSGFYTVQE
                     AERGVVTRLGKLNDIVLPGLNWKPTFIDSVTRVNVERVSELNTSGSMLTQDENMVQVE
                     MTVQYRVEDPAKYLFSVSNPDDSLKQATDSALRYVIGHMTMDEILTTGRATVRERTWS
                     TLRDIIKTYDMGLLVTDVNFQYARPPEEVKAAFDDAIKAQEDEQRLIREAEAYARGEE
                     PIARGQAQRTIEQAQAYKEAVVLNAKGEVERLSQLLPEYKASPELTRERLYIQTMEKV
                     MKNTPKVVMDSSGNNLNVLPFDKLMNSSSVIKAEQPAAAQVVTPQVVQPQVQPRTQIQ
                     PQQAEQQEPTRKGRF"
     gene            complement(4379..4708)
                     /gene="trxA"
                     /locus_tag="PXE92_000152"
     CDS             complement(4379..4708)
                     /gene="trxA"
                     /locus_tag="PXE92_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018357021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDL5759446.1"
                     /translation="MSNVIHTTDATFEQDVLKSDVPVLLDFWAPWCGPCRMIGPVLDD
                     LSVDAQFDGKVKIVKMNVDENPSVPAQFGVRSIPFLLLFKNGEVIAQQVGAIPHAQMA
                     EFIKQAL"
     gene            complement(4963..5634)
                     /locus_tag="PXE92_000153"
     CDS             complement(4963..5634)
                     /locus_tag="PXE92_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HDL5759447.1"
                     /translation="MKKSTLAIILGGALLTGTAVAHQAGDVIFRAGAVHVKANSSSDA
                     KSKAATGIDVDLEVKNNTQLGLTATYMLADNVGIELLGATPFSHKINAKAKVLESGAE
                     VDLDRVVILKQLPPSLYAQYYFFELTAKVKPYVGAGLNYTRFYHAKSVSPAVTDLSVK
                     KHSFGPVANLGVDVKLTDNIYFNAAAWYTRIKTTAKFKAAGADHEVKVKLDPVVLFAG
                     FGVKF"
     gene            5889..8456
                     /gene="clpB"
                     /locus_tag="PXE92_000154"
     CDS             5889..8456
                     /gene="clpB"
                     /locus_tag="PXE92_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HDL5759448.1"
                     /translation="MNFEKMTTKLQEALAESQSLAVGKDNPYIEPAHLLYALLKQEGG
                     SIASLFTTLNVDVPTLIRELQQILDRLPKVQGGNTQVSQQLVRLLNQSDKLAQQFGDS
                     FISSELFVLAALDDNGDLGKLFKQFGLNKEKLTQAISQIRGGDTVNNQNAEDTRQALK
                     KYTIDLTERAKAGKLDPVIGRDEEIRRAVQVLQRRTKNNPVLIGEPGVGKTAIVEGLA
                     QRIVNGEVPEGLKNKRVLSLDMGALIAGAKYRGEFEERLKAVLNDLAKEEGQVILFID
                     EIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQYIEKDAALERRFQKV
                     LVDEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYVSDRQLPDKAIDLI
                     DEAASSLRMEIDSKPEPLDKLERRIIQLKLERQALQKEEDEASRQRLAKLDEEMAAKE
                     REYSELEEIWKAEKSALLGTQHIKSELENARIAMDQARRENDFEKMSELQYGVIPNLE
                     KQLQAVENGEKNADAQLLRTKVTEEEIAEVLSKATGIPVAKMMEGEKEKLLRMEEVLH
                     ARVIGQNEAVDAVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELSKTLANFLFDD
                     PDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRHPYSVVLLDEVEKAH
                     PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSHLIRENAYKGYDVVKEMVM
                     EVVGQHFRPEFINRIDETVMFHSLGQEHIRSIAKIQLQRLIQRLAERGYEVTVTDAAL
                     DHIGKAGFDPLFGARPLKRAIQQELENPLAQQILSGKLLPNKAVTVDYQNGQIVATQ"
     gene            8670..9812
                     /locus_tag="PXE92_000155"
     CDS             8670..9812
                     /locus_tag="PXE92_000155"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDL5759449.1"
                     /translation="MSQLFPEATIRTQAPYRNDIVGSFLRTDALKKAREDFNQQKITR
                     DELREVTRQEVKKLVELQKQHGVKAVSDGEFSRTWWHLDFLAELDGMDWQETEVFNVN
                     FTGHKPKGQTVKIVGDIDFSESHPFVDAYRLLKEAAGDYPTKFTIPAPTMLHIICCVR
                     AEDYQPLPQYQDEQKLYDDIANAYIKAMHKFYDMGLRNLQLDDTSWGQFCAEDKRKEF
                     AARGFNLTDLAEKYVALLNRIVDAKPADMSITMHICRGNFRSSWFSEGGYGPVAEVLF
                     GKCRVDGFFLEYDTERAGTFEPLRHIKDQQVVLGLITSKFGDLEDKNVIIERIKEAAQ
                     IVPINQLCLSPQCGFASTEEGNILTEAAQWAKLNLIKEIAEEVWGS"
     gene            complement(9869..11260)
                     /locus_tag="PXE92_000156"
     CDS             complement(9869..11260)
                     /locus_tag="PXE92_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HDL5759450.1"
                     /translation="MENTPLIEPSKNTRNSLIFVADAILFIILLNTLPFTPEANKGLA
                     LLIFIAVLWLTEALHVTVTALLIPILAVALGLVKSKEALVAFADPTIFLFFGGFALAT
                     ALHIQQLDRMIANKIMALAKGKLSIAVIYLFAVTAFLSMWMSNTATAAMMLPLAMGIL
                     SKLDQKQNHNTYLFVLLGIAYSASIGGMGTLVGSPPNAIVASQLNLTFADWLKYGLPI
                     MLILFPLMIATLYIVFKPNFSVSFDRSFEKIELNRSRIITLAIFVFIALGWIFGDKIN
                     PIISAFLGINGKIASFDTILALIAAALICITRVANWQQIQENTEWGVLFLFGGGLTLS
                     AVLGQTGASKIMADGVVSLIEGGHFYLIGLIVAAFIIFLTEVTSNTASAALLVPIFIS
                     IAQALNMPPVGLALIIGLGASCAFMLPVATPPNAIVFGTGQIKQSEMIKVGFWLNIIS
                     IFVIATVGYLFWL"
     gene            complement(11420..12319)
                     /gene="cdd"
                     /locus_tag="PXE92_000157"
     CDS             complement(11420..12319)
                     /gene="cdd"
                     /locus_tag="PXE92_000157"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HDL5759451.1"
                     /translation="MFRTDITERFEQLKAAKNCEVTQAIIEQLIKQDFHGQLSYEVVD
                     ELCEKFKRSRVELALYCIAIAACYAVTPVSDFNVGAVAIGKNGDFYFGANQEFSGECM
                     QQSVHAEQSAISHAFLAGETLITDVVVNYTPCGHCRQFMNELNSAASLKVHLPHSQNN
                     LLHSYLPDSFGPKDLGIEKVLFDEQPQQFEVKGDHLQQAAIFAANNAYAPYSNAFSGV
                     ALQVGERIVCGKYTENAAFNPTFLPLQSALNYRLFLGLADIPVTRVVLAEAKGSLSSY
                     AMTQALAKSLFGLEIEYLSLQAV"
     gene            complement(12333..13235)
                     /locus_tag="PXE92_000158"
     CDS             complement(12333..13235)
                     /locus_tag="PXE92_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5759452.1"
                     /translation="MISSSLKLGYFSLIVATLFWGGNFVLGKVLSGAVQPITLTYLRW
                     LPAFLILVLLFFRPTWRVMHLLKPRLGVMWVLGLLGVILFPATLYEGLKTTTALNASL
                     YLAISPVLVLFLNRLVFKEKISPIILSGAIISLLGVLWLLMQGKLTRLFSLAINQGDL
                     WAIASTISWAVYCCVIRLRPQGISNTVFLTVLVGLAVLTLTPFFIYEYVAESAKNLAN
                     LTALQWSGIGYLVIGPSILSYAFWNFGIAIVGSAKGAVMTNFTPLFAAMFSIILLNES
                     VHTYHIISAILITAGILICSYKKH"
     gene            complement(13232..13588)
                     /gene="folB"
                     /locus_tag="PXE92_000159"
     CDS             complement(13232..13588)
                     /gene="folB"
                     /locus_tag="PXE92_000159"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDL5759453.1"
                     /translation="MSDKVFIRELTAFASIGAYNWEHTIKQRLVFNIDMAWDFSKAAE
                     TDDVQYCLNYAEVSQKVLDFVESQPFKLVETVAYQLAELLQKEYQLSWIRIELHKPKA
                     VAQASSVGVIVERGHQ"
     gene            13658..14263
                     /gene="plsY"
                     /locus_tag="PXE92_000160"
     CDS             13658..14263
                     /gene="plsY"
                     /locus_tag="PXE92_000160"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDL5759454.1"
                     /translation="MNLIPYLLILTAYLLGSISSAVIFCKLAGLPDPREVGSHNAGAT
                     NVLRIGGKSAALGVLLFDILKGTLPVAMGIYFELSPSQLGFIALAVCLGHIFPIFFQF
                     RGGKGVATAFGAISALSFIVAGGAIGTWLLVFLISGYSSLSAVFTALVVPFYIWWFEP
                     QFTFPVALVCCLLVYRHHDNIQRLWRGQEDKLWDKFKKNRA"
     gene            complement(14337..16244)
                     /gene="parE"
                     /locus_tag="PXE92_000161"
     CDS             complement(14337..16244)
                     /gene="parE"
                     /locus_tag="PXE92_000161"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HDL5759455.1"
                     /translation="MSEKRYGADEITVLKDLEPVQLRPGMYTDTTRPNHLGQEVIDNS
                     VDEALSGFADKIDVILHADNSLEVVDNGRGMPVDIHSTEKISGVELILTKLHAGGKFS
                     NKNYTFSGGLHGVGISVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKK
                     QTGTTVRFYPNPKYFDSPRFSVSRLRHLLRAKAVLCPKLTINFIDKINNTEESWYYED
                     GLSDYLSEALNGYETVPNPPFIGDVTAETEAVSWALTWLPEGGELVAESYVNLIPTAQ
                     GGTHVNGLRNGLLKAMVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQT
                     KERLSSRQASSYVDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMRAAKKVVRKKL
                     VSGPALPGKLADCTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWE
                     VSSDQVLASQEVHDIAVALGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFL
                     RHFPKLVQNGHVYVAMPPLYRIDIGKDEVHYALDEAEKEAILARLAKKKGKPNVQRFK
                     GLGEMNPSQLRETTMEPSTRRLVQLTFDDTVEEGELNTFEIMDMLLGKKRAEDRKQWL
                     QNRGDEADLAV"
     gene            16452..16676
                     /locus_tag="PXE92_000162"
     CDS             16452..16676
                     /locus_tag="PXE92_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL5759456.1"
                     /translation="MVVKILKRKSQKTLQQIYTQPISANIKWTNIEALFLELGAEIEE
                     REGSRIAVVLFQQVRVFHRPHPNPDTDKGR"
     gene            16719..17048
                     /locus_tag="PXE92_000163"
     CDS             16719..17048
                     /locus_tag="PXE92_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL5759457.1"
                     /translation="MRNIMDINGYKAVIAYDPETELFRGEFIGLNGGADFYADNVIQL
                     KKEGELSLNIFLELCREKGIEPFKQYSGKFNVRLSPELHKAAVIAATAENLSLNEWIN
                     QTLEKSV"
     gene            complement(17087..17473)
                     /gene="cueR"
                     /locus_tag="PXE92_000164"
     CDS             complement(17087..17473)
                     /gene="cueR"
                     /locus_tag="PXE92_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HDL5759458.1"
                     /translation="MNISQAAEKTGLSAKQIRDYEKAGLLPPTSRTEAGYRFYNATDL
                     SRLHFISNARKVGFSLAQISELLKLNDNPNRSSRDVKQLTEQHIGELEQKIADLNQML
                     TLLKSWSSSCCGNANSECSILNGLNG"
     gene            17562..17762
                     /locus_tag="PXE92_000165"
     CDS             17562..17762
                     /locus_tag="PXE92_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL5759459.1"
                     /translation="MTITLQLDGLHCGNCVKSVEKALNGVAGVNQVSVTLEPQIAVVE
                     GSAEAQALIEAVEDIGFDAKLA"
     gene            17815..20007
                     /locus_tag="PXE92_000166"
     CDS             17815..20007
                     /locus_tag="PXE92_000166"
                     /EC_number="3.6.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HDL5759460.1"
                     /translation="MTSTAHYSPEQQLLIDGMHCAACVRRVEKALLKVEKVEFASVNL
                     ADQTAFVQGNANPEALVAAVVKIGFGAEVLESEEERRIKQQAQTQRVLGHKRTQFMLA
                     LVVGFALVAFGFYKGMTVNETNRSLWLSWAGISLATMYFSGKDFFLGAFSALKNRSAN
                     MDMLVAISTGTAWLYSCWLTLFPQPNAHVYFEASVMILGFINLGKYLELKAKQRSSLA
                     LEKLLDLAPKQAVIFEENIAKTIPAKAIKPQMRVQALTGDRLAVDGILDSGSIWVDES
                     MLTGEALPVEKKIGDKVRAGTLVQDGSGTYIAEQVGSQTALARVINAVRHAQSSKPPL
                     AQFVDKIAAVFVPVVVSIALLSALIWLAVGQDFAFALSIFTTVLIIACPCALGLAIPL
                     STIAGVARSAEFGVLVRNIEALQASSEIDTLVFDKTGTLTTGRMEVSDVLTFNGFEQK
                     RLLQLAKSVEQHASHPIAKAIAKFAENQTACGVTDVQVLKGLGISAKYEGSTIRMGNW
                     QFVGETIQANLASLLPAKEGDFSSKIFVSVDNQLAGVLSVSDQLRPEAKATIHQFQAE
                     GYQCVMLTGDRQQTADYFANALGLDGVIAEVLPEQKAEKIRALQAEGKKVAMIGDGIN
                     DAPALAQANVGIAMHNGSDIAVETADLSLMREGLAPLMQILPFSKKVLKNMKQSLLGA
                     FIYNVIAIPIAAGVLYPFTGWLLNPMIAAIAMTLSSITVVLNSQRLLK"
     gene            complement(20060..20845)
                     /gene="truA"
                     /locus_tag="PXE92_000167"
     CDS             complement(20060..20845)
                     /gene="truA"
                     /locus_tag="PXE92_000167"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDL5759461.1"
                     /translation="MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEV
                     FCAGRTDAGVHGTGQVVHFETQANRPLQSWCFGTNAHLPDDIAVKWAVAVNEDFHARF
                     SATARRYRYIIFNQKLRSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKC
                     QSNTPWRNIHHLNVSRQGNYVIVDIQANAFVHHMVRNIVGTLLEIGQGRQPVEWAKWV
                     LEQRDREKAAPTAKAEGLYLVEVHYPEHFGIPKTPLGPLFLAD"
     gene            complement(20910..21599)
                     /gene="folE"
                     /locus_tag="PXE92_000168"
     CDS             complement(20910..21599)
                     /gene="folE"
                     /locus_tag="PXE92_000168"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HDL5759462.1"
                     /translation="MTTISPELTITENTLSPEAQKVRQALLAKGIETPTVTHTKDKAS
                     RRAEIQQHMQAVLELLGLDLSDDSLEETPHRLAKMYVDEIFSGLDYATFPKITNIENR
                     MKVSEMVLVDDITLTSTCEHHFVTIDGKVAVAYYPKKWVIGLSKINRVVQFFAQRPQV
                     QERFTEQILTAFQTILETDDVAVYVKATHFCVKCRGIKDTNSYTVTSAFGGVFLEDRE
                     TRKEFLGLLNK"
     gene            21700..22407
                     /locus_tag="PXE92_000169"
     CDS             21700..22407
                     /locus_tag="PXE92_000169"
                     /EC_number="2.7.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid kinase"
                     /protein_id="HDL5759463.1"
                     /translation="MQNIQYLFNADLIPEHQAEFVQSLLTCKNFDNSDRLLGFSKGRG
                     TTWFLDTSAELGINVVLRHYYRGGLFGKIIKDSYFFTRFEATRAYKEFFLLQQMLAWG
                     LPVPRPVAIKIERHFCCYRADIMLEKLENTQDLSKILQSHSLSNEQYEQIGKLIRSLH
                     NHQIHHSDLNIHNILLGNDGKFCLIDFDKCGIEPGENWKQNNLDRLLRSFKKEQGRLN
                     IFFSEENWQAVLRGYTL"
     gene            complement(22462..23559)
                     /gene="apbC"
                     /locus_tag="PXE92_000170"
     CDS             complement(22462..23559)
                     /gene="apbC"
                     /locus_tag="PXE92_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HDL5759464.1"
                     /translation="MNQLNEQQLVEIKAILQQFSHPTLQKDLIALNAFKKAELGGDIL
                     RIEITMPFAWNSGFETLKAETEAKLKQVTGSSGVKWVLNYQIATLKRANKHPAVNGVK
                     NIIAVTSGKGGVGKSTTSVNLALALRAQGTRVGILDADIYGPSIPHMLGAKDQRPTSP
                     DNKHITPITAHGLQSNSIGYLMEEDNATIWRGPMASSALSQLLNETWWNELDYLVIDM
                     PPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGISMFEKVSVPVLGVIENMSMH
                     ICSNCGHHEAIFGTGGAEKIAQKYGTKVLAQLPLHIRLREDLDSGVPTVVAAPEHEIS
                     QAYLALAEKVASELYWQGSVIPSEIMIREVK"
     gene            complement(23556..25103)
                     /locus_tag="PXE92_000171"
     CDS             complement(23556..25103)
                     /locus_tag="PXE92_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5759465.1"
                     /translation="MLKSLQAVTFVKKIAKVTACILLITSCDQLICPQSIQSVWVENR
                     QSDTLLKRAIYSAVFQLDPHKIKASADAAPLRDLLVGLTAYNRKGDVVPAIAQNWFTE
                     DEKEWLFILDEKAVWSNGQPVTAQDFVASWRRLIDPQNHSVLSKYLIYMGIENAKAIE
                     EQIKSVEELGVEALNAHTLRIRLNHPNHQLPEMLAHSALLPTYQGIAPTIDNFVSNAS
                     YRLEKLDAQKMVLKARTQEIPFQTIEYDLITTIQNCSAFDIVENPLLNKKTNIVKFPR
                     LCSYYYEFNFDDPLLAKREIREAIRTMVASANSGQEYGVPSQSVIPHSLVKDREKRWN
                     PVVVEQLLTKAGISPYNPLKLTLLYDENSINIANQVTRALSQSELFNITPKMVDWQTL
                     NKVREQKDYQIARAGWCADYPDPIVFLQKFHSMSPDNHSGYKSEIVDQKLNRLQTETL
                     SAEARESLIQEISEQLYSDVAVLPLFQYHHRVGIVSSLLGIDLNNDSEVIYSKDLKRN
                     LANKDNQ"
     gene            complement(25129..25779)
                     /locus_tag="PXE92_000172"
     CDS             complement(25129..25779)
                     /locus_tag="PXE92_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchE family NAAT transporter"
                     /protein_id="HDL5759466.1"
                     /translation="MDIIINFAIYLQFFIGLFAIVNPFGSLPIFFSMTAHQYEGERNR
                     TSLITAVSIGVILLVSLYFGNLILNAFSISLSSFRVAGGILIVSIAMTMISGKLGEHK
                     QNKEEKNEDITEYENIGVVPLAMPIMAGPGAIGSTIVWGTRYHTWEDYVGFSIAIIVF
                     ALICYILFRYSAPLVKKLGKTGSNVVTRIMGLILMALGIEIIVAGITTLFPVLLVK"
     gene            complement(25901..27772)
                     /locus_tag="PXE92_000173"
     CDS             complement(25901..27772)
                     /locus_tag="PXE92_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HDL5759467.1"
                     /translation="MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNSVAKV
                     NGEEISQQLFNNTLNREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQ
                     YAKELKLGISADQIKSEIVNSQMFQQDGKFSNELYQQTLRHNNLSADGYAAIVQEGML
                     QSQLQEGIINSDFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYE
                     ANKTKLLAPEKLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQ
                     VASEAEAQAIEQALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAFEDAVAN
                     LTAGQMSAAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIRQELVLTEYFTVARE
                     MANKAFENNSSLEEVAKAGNVELQKTDLFTRENVPTALQNEKVLKVLFEGELRQNKQN
                     SDALDVGNDANPQTLFVRVSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENV
                     KALNEGKSVDVKFNAPQTLVYMQAEVENPVLAGTIFAMKKAQDKTTYQMARNQKGDVV
                     IVALDNITEGNAEQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQRSSH"
     gene            27954..28223
                     /gene="rpsO"
                     /locus_tag="PXE92_000174"
     CDS             27954..28223
                     /gene="rpsO"
                     /locus_tag="PXE92_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDL5759468.1"
                     /translation="MSLSVEAKAKIVAEFGRDAKDTGSSEVQIALLTAQINHLQAHFA
                     EHKKDHHGRRGLLRMVSRRRKLLDYLKRTDLAKYSETIARLGLRR"
     gene            28295..29164
                     /locus_tag="PXE92_000175"
     CDS             28295..29164
                     /locus_tag="PXE92_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HDL5759469.1"
                     /translation="MAFASLFTLLDDIAAVLDDVSIMTKVAAKKTAGVIGDDLALNAN
                     QVSGKNVVPERELPIVWAVAKGSLINKVILIPLALLLSVFLPQAIIPLLMIGGAYLCF
                     EGVEKLLHRLLHKNNQAHSDETETLSEKDKIKGAIRTDFILSAEIIIIALGVLQDSST
                     LTQILSLSAIGVGITLFVYGLVGLIVKLDDIGLWLMQKKSTFSQAVGKGLLFAMPWFM
                     KGLSVIGTIAMFLVGGGIFTHNLPMIHHFVEQFGISPHFSTLVDFAVGIVVGIIACLI
                     ILPLMKLFSKKAH"
     gene            complement(29254..30519)
                     /locus_tag="PXE92_000176"
     CDS             complement(29254..30519)
                     /locus_tag="PXE92_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HDL5759470.1"
                     /translation="MFRTLFLMLLLLVGLISGPYLAGNQGYVRIETATTVIEMSIVML
                     VVFFVLAMAVVYLLEWIVTKICRMSNGAYNWFSTRKHKKAQQETLEGLMRMSEGNYSK
                     AEKLFSKNAKHADEPVLNLIKAAEAAQQNGDDLAANKYLIKATEIAGPNNVAVELVRT
                     RILLQQGKLPAARTAIDSLLELAPHSDEVLRLAIQIYKESRAYVALDRLLVEIGQRNF
                     LTAEEYAELEYFVDDGLQDERLQEEGQEGLLSWWENQPNRRRKSVYSRVGVIKRLIDS
                     DDHQSAQEIALETLKKFEDEQLQGLFVQLTRLQIDSDSKLLKVLAKRADKANVKYTDD
                     YARALGYIYTRDGQYQKAKSQFELLLAHDECVADDRIMALHVAEQMGDTLMANRIREE
                     NLKQVNMATQSKVNEPLALPQTATESNSL"
     gene            complement(30538..31848)
                     /locus_tag="PXE92_000177"
     CDS             complement(30538..31848)
                     /locus_tag="PXE92_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HDL5759471.1"
                     /translation="MSRSKKVTEHLEHSAEKVVEEAQQAVDSAGSFAKKEIEEDVVNE
                     AIEKDIQTEMQKAPKEQVVVQKSGGKGLALVALLVALAVGGAGHYMANKKFAEVESQI
                     QAVSAKANQPTTQTMVEMPNFENEKAQIAELVTEYQKALERIKALETAQNGYTQQISS
                     LQLQLQKLNNTSGSDNTFWLLSEADFLLNNAARKVVLDNDIETAKNLLLEADQVLSKA
                     PNTIHIREAIKTDLNTLTALHQIDQNALMQRVANLANKLDDLPILESEQASNSKQDGQ
                     VSDSLADWEKNLEKSAASFLDHFIRVSKRNAADEKAFVAPNQEIYLRENIRLRLQIAI
                     LAVPRQQSELYKKSLQTVGSWVRSYFETSNENVQHFLKELDELAEQTIYVDAPTSLQS
                     LKVIAQQLNKTPEKIEKVEIKAEKELEQAEPVKAEQDAMPLSAQ"
     gene            complement(31860..32624)
                     /locus_tag="PXE92_000178"
     CDS             complement(31860..32624)
                     /locus_tag="PXE92_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDL5759472.1"
                     /translation="MNVLVTRLDSRGQELVDMLNEQQIFAIHQPLFTIEAGKELPLLP
                     SAISRLKSDDYVFVVSPNAVDYAAKTLVDTGFHFRSDLKYFAVGQRTAKYLTEKAEQA
                     VIYPIEFENSEGVLALPEMQNLTDKTILILRADSGRELLAETAVLRGATIQYLECYRR
                     EPVTDDIPEKISLCKRLGVDTIVITSSEILRSLYEQAKADCRAWLFECDLVVVSRRIA
                     KIAKQMGWQEDKIRVSDKADNVTLMNTLLFKVGKSN"
     gene            complement(32624..33559)
                     /gene="hemC"
                     /locus_tag="PXE92_000179"
     CDS             complement(32624..33559)
                     /gene="hemC"
                     /locus_tag="PXE92_000179"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDL5759473.1"
                     /translation="MKDILRIATRQSPLALWQANFVKSELEKHFPQLSVELVTMVTKG
                     DIILDTPLAKIGGKGLFVKELELALLENRADIAVHSMKDVPMSFPEGLGLAVICERED
                     PRDAFVSNNYHSLEDLPKGAVVGTSSLRRQCQLMAKYPHLEVKSLRGNVGTRLSKLDN
                     GEYDAIILASAGLIRLGLQERIRSYISVEQSLPAAGQGAVGIETRANDERILNYIAKL
                     NHSSTACCVMAERAMNTRLQGGCQVPIGGYATLEGDELTLNALVGSLDGSQIIRASAK
                     GHKQEAEQLGILVAEQLLAQGADKILAAVYNENVQ"
     gene            33855..36464
                     /gene="adhE"
                     /locus_tag="PXE92_000180"
                     /gene_synonym="adhC"
     CDS             33855..36464
                     /gene="adhE"
                     /locus_tag="PXE92_000180"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HDL5759474.1"
                     /translation="MAKNTQPFDAQAEVNELVEKGLKALDEFRKLNQEQVDFIVAKAS
                     VAALDKHGILAMHAYEETGRGVFEDKATKNLFACEYVVNNMRHLKTAGVISEDDVTGI
                     TEIADPVGVVCGITPTTNPTSTTIFKALIALKTRNPIVFAFHPSAQQSSAHAAQIVRD
                     AAVAAGAPENCIQWITQPSMEGTSALMKHPGIATILATGGNAMVEAAYSCGKPALGVG
                     AGNVPAYVEKTAKLKQAVYDIVMSKSFDNGMICASEQAAIVDKEIYAEFIKEMQSYGV
                     YLVNKKEKALLEKYIFGIDKAKDENCSGAKLNSAVVGKPAAWIAEQAGFKVPEKTNIL
                     LAECAFVGEAEPLTREKLSPVLALLKSDSTEHGLELSEAMVNFHGLGHSAAIHTENKA
                     LAKTFGERVKAIRVIWNSPSTFGGIGDVYNSFLPSLTLGCGSYGKNSVGNNVSAVNLI
                     NIKRVGRRRNNMQWFKVPSKIYFERDSIQYLKSMHDVHKVMIVTDRSMVDLGFVDRIT
                     EQLRQRRNQVMIQFFTDVEPNPSLQTVQRGTELMRSFQPDTIIALGGGSPMDAAKIMW
                     LFYEQPEVDFRDLVQKFMDIRKRAFKFPQLGRKAKFVGIPTTSGTGSEVTPFAVITDG
                     DIKYPLADYSLTPTIAIVDPALVMSVPSHVAADTGLDVLTHATEAYTSILANDYTDGL
                     ALQAIKLVFENLEKSVKEFDETAREKMHNASTMAGMAFANAFLGICHSMAHKIGGKFH
                     TIHGRTNAILLPHVIRYNGTRPTKVATWPKYTNYVADVRFQDIARMLGLPAETPEQAV
                     EAYAQAVHDLAVRCGVKMSLREQGVDEQAFLNARRELALHAFEDQCTPANPRLAMIED
                     MEAIMTKAYYGKE"
     gene            36611..37507
                     /locus_tag="PXE92_000181"
     CDS             36611..37507
                     /locus_tag="PXE92_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HDL5759475.1"
                     /translation="MQITILDGGISRELMRRNAPFHQPEWSAAALYEGPHFVQAVHED
                     FIAHGAEVITTDSYAVVPFHIGEKRFAADGKMLADLAGRLAKQAVKNSGNIATQIAGS
                     LPPMFGSYRADLIQMERFAEVAQPLIDGLSPYVDIWLCETQSAIIEPISIKALLPKDN
                     RPLWVSFTLTDDEPTTEPQLRSGESVKQAVEEMVKLGVQAILFNCCQPEVIGEALSVT
                     QKTLAELKATHIRTGAYANAFAPQPKDATANDGLDEVRQDLTLEAYLGWAKKWTEQGA
                     TIIGGCCGIGVEYIETLAKNLK"
     gene            37517..38926
                     /locus_tag="PXE92_000182"
     CDS             37517..38926
                     /locus_tag="PXE92_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDL5759476.1"
                     /translation="MSNKKIGLISLTALVLSSMIGSGIFSLPQNMAAVAGAEAITIGW
                     LITGVGIIFLGLSFFFISRLRPDLDGGIYTYAREGFGELMGFMSAWGYWLCATIGIVG
                     YLTVAFEGLGVFTDNPNTVIFGQGNTLASFIGSSIIVWLVHALIAGGIKEAAFVNLIA
                     TFVKVAPLILFIGLGIWYFDVDLFNSDVKATALNNSVSDQVKSTMLITLWVFTGVEGA
                     SVLSAHAKKRSDVGLATVLGIIIALALYVAITILSLGILPRETIANMANPSMGPLLDA
                     MMGPTGKVIITACLIVSVLASYISWTMYSAEVPYRGSKNGAFPKILDKVNKNGTPINS
                     LWFTGFIVQFCLVLVFVFEQSYNTLLLISTSMILIPYFLIGAYLFKLAIQTNATWYIK
                     LTGFMAALYGLWIVYAAGLEYLLLSVVLYVPGILLFLYSNYKFNGRLTLSTAEKVILI
                     VLLVIFGYAVIELPALLAA"
     gene            39033..40256
                     /locus_tag="PXE92_000183"
     CDS             39033..40256
                     /locus_tag="PXE92_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF711 family protein"
                     /protein_id="HDL5759477.1"
                     /translation="MQTYQHKALCRVRTITLFLSLTKDKLQWETALNAAKAEFDLLVP
                     AIQTQGYHIQSIRIVTNSFGEYLDLTNIETAKQDLAYLKQLLTQLNDSGLRIRFAIGE
                     AKTPHELALLPELILNYGDLSNACVNIEPDEFGILDNETILQSAQIIKQIAEITPRGE
                     GNFNFTVNFNCKPFIPYFPASYHSSKLPNSFVIGLETPDLLVAVLKELKASPHNDFYR
                     QCYETMSQALQYHVDEVLEAVKSVQHKLQFAFAGIDSSAAPSKNCASMTEVYELMGVP
                     FFGAAGTVEASSLLTKVFKSIKHVPLVGFSGLMLAVTEDLGLAAGTHKAQFDIRALLT
                     YSAVCGIGLDTVPISNEATVEQIAALMRDTGTMAFRLNKPLTVRLFPIPNKSAGEVTE
                     FESDDLCNCRILAVP"
     gene            complement(40294..41490)
                     /locus_tag="PXE92_000184"
     CDS             complement(40294..41490)
                     /locus_tag="PXE92_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDL5759478.1"
                     /translation="MKQVIRFIVFSTLSLFSFSTFAKTIVAIDAGHGGKDPGAIGKNL
                     GILEKSVTLAISKELKALLDADPNFKAVMTRSGDYFIQLPQRTEIARKHRADLLVSIH
                     ADSSPRGDSLKGASVWVLSNSRASDEMGKWLEDHEKQSELLGGAGSVLSSNNERYLNQ
                     TVLDLQFSHSQRAGYELGKSILAKMSNVAALAKSSPQHASLSVLRSPDIPSVLVETGF
                     LSNSTEEAKLASANYRKQVARAIYNGLVAYRAKNAVASSSVSKKSDKEDKQNKKEEKT
                     AKADLTKKPASEKQEKNTQSDKTKLKEKSKKEDKKEDSAKTNKKKEQQLKEKTALEKD
                     QKNQSKKSDSQREIKVSNSGYHIVQQDETVYSIARAYGTTPQKISELNNLKNYQITVG
                     KKLKVK"
     gene            complement(41510..42001)
                     /gene="tsaE"
                     /locus_tag="PXE92_000185"
     CDS             complement(41510..42001)
                     /gene="tsaE"
                     /locus_tag="PXE92_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDL5759479.1"
                     /translation="MTDSLSFYCEDETKLLEFGQSFALELKKYLLQDQAHSLVVYLNG
                     ELGAGKTTLTRSIVRAFGHQGNVKSPTYTLVEEYQLPPFSLYHFDLYRLADPEELEFM
                     GIRDYFKPQTLCLLEWAVKGKGMIPEADFVIQIDYKNDGRQISLLPQNQTAVDILVNF
                     HQK"
     gene            complement(42001..42555)
                     /gene="orn"
                     /locus_tag="PXE92_000186"
     CDS             complement(42001..42555)
                     /gene="orn"
                     /locus_tag="PXE92_000186"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HDL5759480.1"
                     /translation="MAQNEQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGP
                     VLAVHQTDDLLEKMSDWCVKTHTANGLIERVKASKLTERAAELQTLDFLKRWVPKGAS
                     PICGNSIAQDKRFLYKYMPDLADYFHYRHLDVSTLKELARRWKPEILDKFSKGNTHLA
                     LDDIRESINELKFYREHFIQLDQK"
     gene            complement(42565..43044)
                     /gene="coaD"
                     /locus_tag="PXE92_000187"
     CDS             complement(42565..43044)
                     /gene="coaD"
                     /locus_tag="PXE92_000187"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDL5759481.1"
                     /translation="MSYNVIYAGTFDPITNGHLDIICKASHLFGKVIVAVAQNPSKQP
                     LFSLEERVELVKQSCTQWQNIEVIGFSGLLADFAKQQNAKALIRGIRGADDIDYEIQL
                     AQLNYKLSGDLETIFFPPSIEWRYLSSTMVREIYRHNGDISQFVPQAVKNALKIAKV"
     gene            complement(43046..44326)
                     /gene="waaA"
                     /locus_tag="PXE92_000188"
     CDS             complement(43046..44326)
                     /gene="waaA"
                     /locus_tag="PXE92_000188"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HDL5759482.1"
                     /translation="MLRLLYICLSYLLQPVVLLLMWYKGRKQPAYRKRLWERYGIYDE
                     SEKPKAKGVVIHAASVGEVIAATLLIKAVSKQYPELPLIVTTVTPTGSGRVQAAFGNS
                     VSHFYLPYDLPDAIERFLNFIDPKLMIVIETELWPNLIRKVNIRKIPFVIANARLSPR
                     SAKRYGWVKGSIKDMLNQISLIMAQDEVSRDRYLALGYAPAKMVNTGNLKFDLEITPQ
                     LHQSVIKTKASLNLTERPIWIAGSTHEGEEKLILDAHKLLLEHYPNLVLILVPRHPER
                     FGLVELLIQKSDLNYVKRTENKTLSQNTQVMLGDTMGEMMLLYGLSDIAFVGGSLVKH
                     GGHNPLEPIAFNIPVVSGLYTYNFPEIFEKLREVKGVIEIESSVEALTESIQLLLKQP
                     QIGQEIAKSGLSVLQENQGALKRHLDLLASYLEK"
     gene            complement(44506..45885)
                     /gene="yegQ"
                     /locus_tag="PXE92_000189"
     CDS             complement(44506..45885)
                     /gene="yegQ"
                     /locus_tag="PXE92_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HDL5759483.1"
                     /translation="MTLKYAKPELLSPAGSLKNMRYAFAYGADAIYAGQPRYSLRVRN
                     NEFNHANLKVAIDEAHALGKKFYVVVNIAPHNSKLKTFIKDLKVVVDMKPDALIMSDP
                     GLIMLVRENFPEMDIHLSVQANAVNWATVKFWRQMGLTRVILSRELSLEEIEEIREQV
                     PDMELEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYKMEEGKIDEVGQI
                     VPKYEPEIEVKNVAPTLGNGEATDKVFLYTESQRPDEQMTAFEDEHGTYFMNSKDLRA
                     VQHVERLTQMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDESLMDTLESL
                     AHRGYTEGFLRRHTHDEYQNYEYGYSISERQQFVGEFTGKRNAEGLAEVAVKNKFLVG
                     DSVEMMTPKGNIVFKIERMLNRKNENVDAALGDGHFVFLDVPADIELDFALLMRNLVN
                     TNTRNPHQA"
     gene            46013..46384
                     /locus_tag="PXE92_000190"
     CDS             46013..46384
                     /locus_tag="PXE92_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759484.1"
                     /translation="MKLKYLLATTLLAFSTFTAAQSIKTEMMQMNMQANKLMRAESAE
                     EFSEIANDFIIITEKTKGIFPNSVEGDKAAQEDYQAGMQKLIDMVNQASEKAQAGELQ
                     EAKMLISELEMIKREYHKKYK"
     gene            complement(46423..49899)
                     /gene="dnaE"
                     /locus_tag="PXE92_000191"
     CDS             complement(46423..49899)
                     /gene="dnaE"
                     /locus_tag="PXE92_000191"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDL5759485.1"
                     /translation="MSDCRFVHLKVHSDFSMINGLAKVKSLVKTAAANNMVAMGLTDF
                     INFCGLVKFYGEALGAGIKPIIGADVYVRTESGNEDYFELTLLAKNNKGYHNITQILS
                     KAYQQGYVEFPMVEREWLAELNEGIIILSGGRMGDVGKALLKENRQEAEEKLAFYQQY
                     YPNHFYLSVCRTGRADEERYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAI
                     HDSYTLDDPKRPKKYSPKQYFRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYF
                     LPNFPTGELSTEDFLVKKSKEGLEERLEFLFPDPEERANKRSVYDERLQVELDVINQM
                     GFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN
                     PERVSMPDFDVDFCMDGRDRVIEHVAETYGRQAVSQIITFGTMAAKAVIRDVGRVLGH
                     PYSFVDRISKLIPPDPGMTLEKAFAAEPKLPELYEADEEVKDLIDMARKLEGVTRNAG
                     KHAGGVVIAPTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKW
                     ALEMINERLAREGKEPIRIETIPLDDKKSFALLLAAKTTAVFQLESRGMKDLISRLKP
                     DCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEVSYPDPQYQHECLKPILEPTYGV
                     IVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAAQREVFEKGAEAKGIDGKLA
                     GQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVG
                     FYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIKGVGEGPIEAILAARQKEG
                     KFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKNLEDALKASDQHAKM
                     EELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGLYLSGHPIGRFLKEL
                     SHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIEDRSGKLDITLFS
                     EALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVLSLDEARGRFAKSLALAISK
                     EQLSADFIKKMTAIITPHKEGTLPLHFYYQSPEGRVLLKGGVEWRISPNEAMFSELKA
                     LLGENSVELEFE"
     gene            complement(50124..51221)
                     /gene="lptG"
                     /locus_tag="PXE92_000192"
     CDS             complement(50124..51221)
                     /gene="lptG"
                     /locus_tag="PXE92_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HDL5759486.1"
                     /translation="MQFFSMNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDV
                     GRGSYDGLKAAYYTFLTIPRDIETFFPIAALLGSLLGLGNLASLSELVVMQASGFSRF
                     RIGLAVMKTALPLVIFTMIIGEWGVPQTEQFARNMRSIAQSGGSMLATKDGFWAKDGN
                     SFIYINHIKNEKSLDNVLIYQFGEGQNKRELQSVLKARTANYSDEKGWVLSKVEKSTV
                     GENQIQQAKQPDQVWQTSLTPSKLGIVSLKPESLSISGLADYVGFLKDTGQDPKRFEI
                     TFWRKVFQPISMAVMMLLAISFIFGPLRSSTMGAKIVIGIVAGFMFYVANIVFGNLSL
                     IATWLPIPVGALIPSLLCLIIVWWLLSKKRD"
     gene            complement(51221..52330)
                     /gene="lptF"
                     /locus_tag="PXE92_000193"
     CDS             complement(51221..52330)
                     /gene="lptF"
                     /locus_tag="PXE92_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HDL5759487.1"
                     /translation="MILSRYLTKEIFKSQLAILFILLLIFFCQQLVRVLSSAVSGKVP
                     ADLVVSLLGLGMPTMAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLVKVA
                     MFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKANPRFAALSAGQFMSAGGYVLFID
                     KIENNSLNDIYVFQPEQQKKNKPSVVVAESGTLQGLPNGDQVLTLAESKRFEGTPQSA
                     DFRISHFENYSAYLGYQDVESDEKLVQRADFKKLMETKTPEAKAELHWRLALILAVPL
                     MALLAVPMSSVNPRQGRFAKLLPALLLYLIYFLLQSSLKSSGASGKLNAEVLMPLVSV
                     AFLVLGVILNAWDSKFMSKLRYQFGAKKLTNKAVA"
     gene            complement(52504..>53260)
                     /locus_tag="PXE92_000194"
     CDS             complement(52504..>53260)
                     /locus_tag="PXE92_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759488.1"
                     /translation="LGTQNTIFANDDAQISRYEQAKLRLSYDGNVGNLLQQLSQRLKV
                     GFIAYDVDITRKISLQNETETAIKTINEQIESQLTNIDVRFEKIGERLFLVVSAKDVA
                     PLLQNEPKEVQFVGDVIFDGEPNLTEQAQSTAEATKVQNILNIATNQEKIMAAKGKKA
                     PQYKTVTKDNIGLKNIRVTALGTFLVFDTSVDAAKLRVKGNFEDIAQGENIIAILHQN
                     TEAPPKIEIEDSQGKKLILEAHKATSSKKSKKQ"
BASE COUNT        15518 a        11774 c        10195 g        15773 t
ORIGIN      
        1 ctactcaacg caagatgacg gctcgctcaa tgctaaatat gtggtcggta caggcgatga
       61 taccgatgga gaagtaacaa actttgtaat catcacaagt gagtacaaat acattgatgc
      121 acagtccgcc aaggagatta ctgatgcacc gctaacaaaa gaggatattg gcaaaacgcc
      181 aacgcagatt atgttagggc gtatctataa gtacttaaaa gagacggggc agattgtagt
      241 ttaatttagt aacttttgaa gactagctca tcaccaacgt gttccataaa tgtaccgtaa
      301 atggtgttat ttaatgtaaa aagatgtgaa ataatggtag gtaatataga ggggttatct
      361 ctataagtct ttgtttttat tagttaaaat aaacgccttt tataaaatac ctatcgccct
      421 tctaaggcgt gggtcaaagg ttcgaatcct ttagggcgtg ccattaaatt cttttaaatt
      481 caaatactta cacagcctca aaaactcacg ctaaagaact attttctgta ttgtgacaaa
      541 attgtgccaa agtaaagttt actggttcaa acaaaaaagc catctagctc tatctcacta
      601 aatggcttta ttttatcttt tattaagctg caaaaggatc acgcaaaatc atcgtttcga
      661 cacgatccgg acctgtagaa agaatatcta ccggcacacc gaccagctct tcgatacgtt
      721 taatgtaatc taatgcggct tgtggtaaat cttcacgttt tgtcacacgg aaagtatttt
      781 cagaccaacc cggcattgtt tcataaattg gttcaacacc ttcccagtct tttgctgcaa
      841 gaggggcata ttcgacaatt tttccgtttg gcattttgta ggcaacgcag atttttagct
      901 ctttgaatcc gtctaaaaca tcgagtttag tcatacagaa gcctgaaatg gagttgattt
      961 gcactgctcg gcgaacggct acggcatcaa accagccaca acggcgaggg cgaccggtta
     1021 ccgctccgaa ctcattacct ttgcgagcaa tttcagcacc tacatcgtca aatagttcgg
     1081 tggtgaacgg tccactacct acacgggtac agtaggcttt gataatccct aatacataat
     1141 ctaaatgacg aggaccgtag cctgatccgg ttgccacacc gcctgctgtc gtattcgagc
     1201 tggttacgaa cgggtaagta ccgtggtcga tatctaacat cgtgccttga gccccttcaa
     1261 ataaaatatt gtcgccgttt tcacgtgctt cgtgaagtaa agttgtcaca tcggcaacca
     1321 ttccggtaat cacatccgca atcgcaaaca catcatctaa ggttttttga taatctaccg
     1381 cttcaacttt gtaataattg actaattgga agttgtagta atctaaaata tcttttaatt
     1441 ttgcggcaaa atgttctttg tcgaataaat cgctgacacg taaaccacgg cgagcgactt
     1501 tatcttcata agctgggcca ataccacgtc ctgttgtacc aattttgttt ttaccaagtg
     1561 ccgcttctcg agcgtgatcc atcgcaacgt gataaggcag aattaacggg caagcttcag
     1621 aaatttttaa acgctcacgc acattaatgc ctcgttcttc tagctccccc atctctttca
     1681 ttaatgcctc tggagaaagc actacaccat taccgattaa acaagtcacg ttatcacgca
     1741 aaatacccga tggaattaaa cgcagaacgg ttttttcacc attaatgatt aaggtatgcc
     1801 ctgcattatg tccaccttga taacgtacta catatttcac acgatctgtt aataaatcaa
     1861 caattttgcc ttttccctca tcgccccact gagcgccaag aatagcaaca cttttaccca
     1921 tagaaatgcc tcttttagtt aggatgaata acgaaaccca ttataacttc atatcgcaag
     1981 cggtcaattt tttcaaattt tttgcaaaaa atcagccaaa atttaccgct tgttatgatc
     2041 agaataggga tgaaaattaa aaacccgata caagatcggg ttttatagat acaattattt
     2101 tgtcggtgct tgcataaagc gtaagaattc gctgtttggc tttaataaca tcatattatt
     2161 ttgaccttcg gcaaagctat cttcataggc ttttaaacta cgaataaaac tgtaaaattc
     2221 cggctcgtta ccaaatttct ctgaatagag ttttgcagct tgagcgtcac cttcacctcg
     2281 caaggcttgg gcagttttgt tcgcatttgc caaaatcagc accacttttt tatccacttc
     2341 ggcacgaatt acctctgctt tctcattacc ttgtgagcgg tgttcacgag caaccgcatc
     2401 acgctcggca cgcatacgtt ggtaaattga agaagaaact tcatttggta agttgatttg
     2461 cttcactcgc acatcaacca cttcaattcc taaacgctct gctccatctt caccggcatt
     2521 cagcgctttt tgggctcctg ccattaactc accacgagag ccggatacaa tatctttaat
     2581 ggttcgagaa ccaatctcgg aacgcagacg atcccctacc ttacggcgta ataaatccgc
     2641 cgctttttgg taatcccccc cagtagaggt ataaaattgg ccaaaatcac tgattcgcca
     2701 ttttacatag gagtccacta ataaatcttt tttctcgact gttacaaaac ggtcttcttg
     2761 cccatctaga gtttgaatac gagcatctaa tacctttaaa ctatcgataa atggtacttt
     2821 aaagtgaatc cccggttcat ataccaccac tttttgatcg ctatcacgat gaactttgtt
     2881 aaaacgtaac ataatgccac gctcgccctc gtttacaatg gtgattgcct gtagcacaac
     2941 aaaagcaact acagcaagta taggtactaa taatctacgc atgattaaaa tctcccctta
     3001 cgagttggtt cttgttgttc tgcttgttgc ggctgaattt gtgttcttgg ctgtacttgc
     3061 ggctgaacaa cttgtggtgt aactacttgt gccgccgcag gctgctccgc ttttattacc
     3121 gatgaagaat tcattagctt atcgaaaggc aatacattca aattattacc acttgaatcc
     3181 atcaccactt tcggcgtatt tttcatgact ttttccattg tctggatata taaacgttca
     3241 cgagtcagct ctggagaggc tttatattca ggtaataatt gactcaaacg ctccacttcc
     3301 cctttcgcat ttaacacaac tgcttctttg taagcttgag cttgctcaat cgtacgctgt
     3361 gcctggccac gtgcaatcgg ctcttcacct cttgcatagg cttccgcttc acgaattaag
     3421 cgttgctcat cttcttgtgc tttgattgca tcatcaaagg cggctttcac ctcttcaggc
     3481 ggtcgtgcat attggaagtt tacgtctgtt accaataaac ccatatcata ggttttgata
     3541 atatcacgca atgtcgacca cgttctttca cgcacggttg cacgccctgt ggttaaaatt
     3601 tcatccatcg tcatatgacc aatcacataa cgcaaggcac tgtctgttgc ttgttttaag
     3661 ctgtcatcag ggttgctcac actaaacaga tatttagccg ggtcttccac acgatactga
     3721 accgtcattt ctacctgcac catattttca tcttgagtca gcattgagcc actggtgttc
     3781 agctctgaaa cacgttctac gtttactctt gtaaccgaat caataaaagt cggtttccaa
     3841 ttcaaccctg gcaacacgat atcattcagc ttacctaaac gagtaaccac accacgttca
     3901 gcctcttgca cagtgtaaaa acctgagcca acccaaacta ctgctgcaag acctaaaacc
     3961 acaggtagaa atttccctaa gcttgcacta ggttgatttg aactattatt aggccctttt
     4021 ccacccccca ttttttttaa taaactgcta aatacttctt ctaaatcagg gggctgttgt
     4081 tcatttcttt gattattggt cggctcttgt tgtgaaccct gttcttgttg ctcaggcttt
     4141 ggctcagctt ttttctgccc cggtttaccc caaggatctt gctgattgcc tgattcattc
     4201 cacgacataa atatctccaa aataaaatcg aatcgcactt taaagcttag aatgcaagtt
     4261 agtgattgta cctatttagt aagcttttga ctaggtttat ctgaaacaag cggtcttttt
     4321 tcactattta tttgcaaaaa aatagggcga taaattcgcc ctagtattgc tcttaaaatt
     4381 ataatgcttg tttgataaat tcagccattt gggcgtgcgg aattgcacca acttgctggg
     4441 caatcacttc accatttttg aataatagta aaaatggaat gctgcgtacg ccaaattgtg
     4501 ctggtacaga tggattttca tctacgttca ttttgacaat ttttacttta ccatcaaatt
     4561 gtgcatcaac agataaatcg tcaagtacgg ggccgatcat acggcaagga ccacaccaag
     4621 gcgcccagaa gtctaataat accggtacat ctgattttaa aacatcttgt tcaaatgtag
     4681 catctgttgt atgaatgaca ttgctcataa gtttatcctt aaatattaaa taaaaaaaga
     4741 aacgccctaa ctggcaagtt aaggcgaaca gttttgtata agatagagat taatctataa
     4801 aatttcaagc aagatttacc aattacacca ataaatattt gcatagtgag attttattat
     4861 ctcttcaatt atttaattaa aagtggaaag ggctatattc aaacaacttt aacaaaaaag
     4921 gactaatcac taagattagc ccaactcgtt cccaacaaat aattagaact tcaccccgaa
     4981 accggcaaat aagacaaccg gatcaagttt tacttttact tcgtgatctg cacctgctgc
     5041 tttaaatttt gcggttgttt taatgcgtgt gtaccaagct gccgcgttga agtagatgtt
     5101 atcggttaat tttacatcaa cacctaggtt tgctaccggt ccgaaagaat gtttttttac
     5161 acttaagtca gtaacagcag ggctaactga tttagcgtgg tagaagcgag tgtaatttaa
     5221 acctgcacca acgtaaggtt ttacttttgc agttagctca aagaaatagt attgggcata
     5281 aaggctcggt ggtaattgtt ttaagataac aactctatcc aaatctactt ctgcacctga
     5341 ttctaaaact ttggctttgg cattaatttt atgagagaaa ggggttgcac ctaataactc
     5401 aatacccaca ttatcggcta acatataagt tgcagttaag cctaactgag tattgttttt
     5461 cacttctaaa tctacatcaa tacctgtcgc tgcttttgat tttgcatctg aacttgaatt
     5521 tgccttaaca tgtaccgcac cggcacggaa tatcacatca cctgcttgat gtgccaccgc
     5581 agttccagtt aataatgccc cacctaaaat aattgctaaa gttgattttt tcattttcat
     5641 atcctcaaaa ataattagaa tacctataat gaggtaaact ttagcgaagt gtaaatgaaa
     5701 tgaaatagaa atgaattgat atttatcaaa cttttaacac aaagataccc aacaagagtt
     5761 attttattta tttttgtgat ctttttcaca tttttacttg aaaattgttt accaagctcc
     5821 atttagtgtt tcaacaagag atgtaaataa aaatttacac tttctaaact cattgtaagg
     5881 agaaagaaat gaattttgaa aaaatgacca caaaactgca agaagccttg gctgaatcac
     5941 agtcgcttgc ggtaggaaaa gataatccgt acatcgaacc ggcacatttg ctctatgcgt
     6001 tgttaaaaca agaaggtggc tcgattgctt ctttgtttac cacattaaat gttgatgtac
     6061 cgactttaat tcgtgaatta caacaaattt tagaccgctt gccgaaagtt caaggcggta
     6121 acacccaagt ttcacaacag ttggtcagac tgttaaatca atcagacaaa ctggcacaac
     6181 aattcggcga cagctttatt tcatcagaac tatttgttct agctgcactt gatgacaatg
     6241 gcgatttggg gaaactattt aaacaatttg gcttaaacaa ggaaaaacta acacaagcca
     6301 tcagccaaat tcgaggagga gacacagtga ataatcaaaa tgcggaagat acccgccaag
     6361 cactcaaaaa atatacgatt gatttaaccg aaagagccaa agccggtaaa ttagacccgg
     6421 ttatcgggcg tgatgaagaa attcgccgtg cggtgcaagt cttacaacgc cgtaccaaaa
     6481 acaaccctgt gttaattggt gaaccgggtg tggggaaaac ggcgattgta gaaggcttgg
     6541 cacagcgtat tgtaaacggc gaagtgccgg aaggcttgaa aaataagcgt gtactttcgc
     6601 tggatatggg agcattaatt gccggtgcga aatatcgtgg tgaatttgaa gagcgtttaa
     6661 aagcggtttt aaacgacctg gcgaaagaag aagggcaagt tatcctcttt attgatgaaa
     6721 ttcacacgat ggttggagca ggcaaaacag acggagcaat ggacgccggc aacttattaa
     6781 aaccaagcct tgcccgtggt gaattgcact gtgtgggggc tacaaccctt gatgaatatc
     6841 gccaatacat tgaaaaagac gcagcccttg aacgccgttt ccaaaaagta ttggtggacg
     6901 aaccaacggt tgaagatacg attgcgattt tacgtggttt gaaagagcgt tatgaaatcc
     6961 atcatcacgt tcaaattaca gaccctgcca tcgtggcggc ggcaacgctt tcgcaccgtt
     7021 atgtgtctga ccgtcaattg ccggataaag cgattgactt gattgatgaa gccgcttcaa
     7081 gcctgcgtat ggagattgat tctaaacctg agccgttgga taaattagaa cgccgcatta
     7141 tccaactcaa attggaacgc caagcgttac aaaaagagga agatgaagcg agccgtcagc
     7201 gtttagccaa attagacgaa gaaatggcag cgaaagagcg tgaatattcc gagctggaag
     7261 aaatctggaa agcggaaaaa tccgccttac ttggtacaca gcatattaaa tcggagttgg
     7321 aaaatgcccg aattgcgatg gatcaggctc gccgtgaaaa cgatttcgag aagatgtcgg
     7381 aattgcaata tggcgtgatt ccaaacttgg aaaaacagtt acaagcggtc gaaaatggcg
     7441 aaaaaaatgc agatgctcag ctcctccgta ctaaagtcac cgaagaggaa attgcggaag
     7501 tgctttcaaa agcaacgggc attcctgttg caaaaatgat ggaaggcgag aaggaaaaac
     7561 tccttcgtat ggaagaagta ttacacgctc gggttatcgg gcaaaatgaa gccgttgatg
     7621 cggtggcaaa tgcgattcgc cgtagccgtg ccggactttc cgatccgaat aaaccgattg
     7681 gttcattcct attcttagga ccgaccggcg tgggtaaaac cgagttaagc aaaaccttag
     7741 ctaatttctt gtttgacgat cctgatgcta tggtgcgaat tgatatgtct gaatttatgg
     7801 aaaaacacag cgtatcccgc ttagtgggcg cacctccggg ctatgtcggc tacgaagaag
     7861 gcggctattt gaccgaagcg gttcgccgcc atccatattc ggtagtgtta cttgatgaag
     7921 tggaaaaagc tcaccctgat gtgtttaaca ttttattgca agtgttagat gacgggcgtt
     7981 taaccgacgg gcaaggcaga acagtcgatt tccgcaatac ggtagtgatt atgacctcaa
     8041 acttaggctc gcatttaatt cgagaaaatg cgtataaagg ctatgatgtg gttaaagaaa
     8101 tggtgatgga agtcgtcgga cagcacttcc gccctgaatt tatcaaccgt attgatgaaa
     8161 cggtgatgtt ccactcactt ggtcaagagc atatccgttc gattgcgaag attcagctac
     8221 aacgcttaat ccaacgcttg gcagaacgag gctatgaggt gacagtaacc gatgcagcat
     8281 tagatcatat cggcaaggct ggtttcgatc cgctgttcgg agcaagacca ctgaaacgtg
     8341 cgattcaaca agagcttgaa aatccgcttg ctcaacagat cttaagcggt aaattattac
     8401 cgaataaagc cgttacggtg gattaccaaa acgggcagat tgttgcaaca caataatgtc
     8461 tccgatggtg cgagcgtcct cgctcgtacc ttacaagcgg tggatttatc gtaaaaattt
     8521 gcaaaaaatt gctcgaaaat aaccgcttgc acagtaaaaa ttttcatatt gcccttcatt
     8581 aattttcata agctaatgaa gggcttttta ttactctttt tgctatcatt aacggcgttt
     8641 ataaccaata caattacaag gagtaattta tgagccaatt atttccggaa gcaacaatcc
     8701 gcactcaagc cccgtatcgt aatgatattg taggcagctt tctacgtacc gatgcgttaa
     8761 aaaaagccag agaagatttc aatcagcaaa aaatcacccg tgacgaattg cgtgaagtca
     8821 cacgccaaga ggtcaaaaaa ttagttgagt tgcaaaagca acacggtgta aaagcagtct
     8881 ctgacggtga atttagccgg acttggtggc atttagattt cttagctgaa cttgatggaa
     8941 tggattggca agaaaccgaa gtctttaacg tgaactttac cggtcataaa cccaaagggc
     9001 aaacggtaaa aatcgtgggc gatattgatt tctccgaaag ccaccctttt gtggacgctt
     9061 atcgtctttt aaaagaagct gccggcgatt acccaaccaa attcacgatt ccggcaccga
     9121 caatgttaca tattatctgc tgtgtgcgtg cggaagatta ccaaccgtta ccacaatatc
     9181 aagacgaaca aaaactgtac gatgatattg ctaatgctta tatcaaagca atgcacaaat
     9241 tctacgatat ggggctacgt aacttacaat tagacgacac cagttgggga caattctgtg
     9301 ccgaagataa acggaaagag tttgcagcca gaggatttaa tttaactgat ttagcggaaa
     9361 aatatgtcgc attattaaac cgtattgttg atgcaaaacc ggcggatatg tcaattacga
     9421 tgcacatctg ccgtggtaac ttccgttctt cttggttctc ggaaggcggt tatggaccgg
     9481 ttgccgaagt attattcggt aaatgccgtg ttgacggctt cttcttagaa tacgataccg
     9541 aacgtgcagg cactttcgag ccactacgcc acattaaaga tcaacaagtg gtactaggct
     9601 taattacctc taaatttggc gatttagaag ataaaaatgt gatcattgag cgtattaaag
     9661 aagcggctca aattgtgcca atcaatcagc tatgcttatc accacaatgc ggctttgcct
     9721 ccaccgaaga aggcaatatt ttaaccgaag ccgcacaatg ggcgaaacta aacttaatta
     9781 aagaaattgc ggaagaagtt tggggtagct aatcctctat aatacaaata gccgagtaaa
     9841 tactcggcta ttttagtttg ttttaacatt acaaccagaa gagataccca acagtcgcaa
     9901 tcacaaagat agagataata tttagccaga aaccaacttt aatcatctca ctttgtttaa
     9961 tttgccctgt accaaataca atcgcattcg gtggggtggc aaccggcaac ataaaggcgc
    10021 aagatgctcc tagaccaata attaaggcta atccgaccgg tggcatattt aatgcttgtg
    10081 ctatagagat gaaaatcggc actaacaaag ccgcactggc tgtgttagag gtaacctcag
    10141 ttaggaaaat aataaatgct gccacaatta aaccaattag gtaaaaatgc cccccttcaa
    10201 ttagtgagac gaccccatca gccataattt tgctcgcacc agtttgtcct aatacagcac
    10261 ttaacgtcaa accaccacca aataggaata atacccccca ctcggtgttt tcttgaatct
    10321 gttgccaatt tgcgacacga gtaatgcaaa taagtgctgc ggcaatcaat gcaagaatgg
    10381 tgtcaaagct cgcaattttg ccattaattc ccagaaatgc agaaataata gggttaattt
    10441 tatcaccaaa aatccaacca agcgcaataa agacgaaaat agccaaggtg ataatacgag
    10501 aacgatttaa ttcaattttc tcaaatgatc gatcaaaact aactgaaaaa tttggtttaa
    10561 atacgatata tagtgttgca atcattaatg ggaataaaat tagcataatt ggcaaaccat
    10621 attttaacca atcagcaaaa gtcagattca attgagaagc aacaatcgca ttcggtgggc
    10681 ttcccactaa agtacccatt ccaccaatac tggcactata agcaattcct aataacacga
    10741 aaagataagt attatggttt tgtttctgat caagtttact taaaatcccc attgccaaag
    10801 gtaacatcat tgcagctgta gctgtattac tcatccacat tgacaaaaac gctgttaccg
    10861 caaataaata aataactgca atcgataatt tacctttagc taatgccata attttattgg
    10921 caatcatacg atctagctgc tgaatgtgta atgctgtcgc taaggcaaag cctccaaaaa
    10981 ataagaaaat cgttggatca gcaaaagcaa caagagcttc ttttgattta accagcccca
    11041 gtgctacagc caaaatcgga attaataatg ccgtaaccgt aacgtgtaat gcttctgtta
    11101 gccataagac ggcaatgaaa attaacaatg ccaacccctt attggcttca ggggtaaaag
    11161 gcaaggtatt taacaaaata ataaataaaa tagcatctgc aacaaaaatc aagctattgc
    11221 gtgtattttt actcggttca ataagaggag tattttccat aaaaacctca caaaatatag
    11281 ataatcagtg gtatcactat atataaaaaa acgatatagg caaatataat tgttgcaaaa
    11341 gtgtgaagct catcaaaaaa tttaacacta aaaaataaat tgcttaaaga tacagcacct
    11401 ttgcaaaaat aaatcaaaat tacaccgctt gtagcgaaag gtattcaatc tctaacccaa
    11461 atagtgattt tgccaatgct tgagtcattg cataactact gagagagcct ttcgcctcag
    11521 ccagcacaac tcgagtaacg ggaatatcgg caagccctaa aaataatcga tagttcaacg
    11581 cgctttgcaa cggtaaaaaa gtaggattaa aagctgcatt ctcagtatat ttaccacaaa
    11641 caatacgctc acctacttgc agtgcaaccc cactaaatgc gttgctgtaa ggggcataag
    11701 cattattggc agcaaaaatt gccgcttgtt gtaaatgatc gcccttaacc tcaaattgtt
    11761 gcggttgttc atcaaataag actttctcaa tccctaaatc tttcggtcca aaactatccg
    11821 gcaaatagct atggagcaaa ttattttggc tatgcggtaa atgtactttt aagcttgccg
    11881 cactgtttaa ttcattcata aattggcggc aatgcccaca aggggtatag ttcacaacca
    11941 catctgttat caaagtttcc cctgctaaaa atgcgtgcga gattgcactt tgctctgcgt
    12001 gaacggattg ttgcatacat tccccggaaa actcttggtt tgccccaaaa tagaaatctc
    12061 cgtttttgcc aatcgcaacc gcccctacat taaaatcgga aactggtgta accgcataac
    12121 aggcagcaat ggcaatgcaa tataaagcca actcaacacg agagcgttta aatttttcac
    12181 agagttcatc aaccacttcg taagagagct gcccgtgaaa atcttgcttg ataagttgct
    12241 caataatagc ttgtgtaact tcacagtttt tcgctgcttt taattgttca aaacgctctg
    12301 taatgtctgt tcgaaacata ctgtacctcc gtttaatgtt ttttatagct gcaaatcagt
    12361 atccctgccg taatcagtat ggcactaata atatggtaag tatgaactga ttcatttaat
    12421 aaaataatac tgaacattgc tgcaaagagc ggcgtaaaat tagtcattac cgctccttta
    12481 gcagaaccga ctattgcaat gccgaaattc caaaacgcat aagagagaat agaagggccg
    12541 ataaccaaat agcctatccc actccattgt aaagcggtca aatttgctaa attttttgca
    12601 gattctgcta catattcata gataaaaaat ggcgttaacg ttagaactgc cagccccact
    12661 aatacggtca aaaacaccgt attgcttata ccttgtggac gtagccgaat cacacaacaa
    12721 taaaccgccc agcttatagt agaagcaatc gcccataaat caccttgatt aattgccaag
    12781 ctgaataagc gagttagctt cccttgcatc aatagccaca gcactcccag caaactgatt
    12841 attgccccac ttagaataat cgggctgatt ttctccttaa aaacgagccg atttaaaaat
    12901 agcaccaata caggcgaaat agctaaatag agactcgcat tcaatgctgt tgtcgttttt
    12961 aaaccttcat ataaggtagc cgggaataaa attaccccaa gcagacctaa tacccacatc
    13021 acacctaaac gaggttttaa taagtgcatt acccgccaag ttgggcgaaa aaagagcaaa
    13081 actaaaatta aaaaagccgg caaccaacgc aaataggtta aggtaatagg ctgaactgcc
    13141 ccacttaaca ctttgcctaa tacaaaattc ccaccccaaa aaagagtagc aacgattaaa
    13201 ctgaaatacc ccaatttcag tgatgatgag atcattgatg acctcgttct acaatcacac
    13261 ctacactgct tgcttgggca accgctttcg gcttatgcag ttcaatccga atccaagaaa
    13321 gttgatactc tttttgtaat agttccgcca gttgataggc aacagtttca actaatttga
    13381 aaggttgaga ttcaacaaaa tccagcactt tttgcgatac ttccgcataa ttcaagcaat
    13441 attgtacatc atcggtttct gccgctttgg aaaaatccca cgccatatca atgttaaaaa
    13501 ccaagcgttg cttaatcgta tgctcccaat tgtaagcccc aatggaagca aaagcggtta
    13561 gttctcgaat aaaaacctta tcactcattt ttcgtcctgt tttattttct gaatttctgt
    13621 aaaatatagc acaagataaa tttaatcagg aaaatttatg aatttaattc cctatttatt
    13681 gatcttaacc gcctatttgc tcggctcgat ttccagtgcg gtcatttttt gtaagctggc
    13741 aggcttgcct gacccaagag aagtcggctc acacaatgcc ggtgcaacga acgtactacg
    13801 aattggcggt aaaagtgccg cattaggtgt gcttttattc gatattttaa aaggcacatt
    13861 accggtggcg atggggattt attttgaact ctctccctca caactcggtt tcatcgcctt
    13921 agcggtttgt cttgggcata ttttcccgat tttcttccaa ttccgtggcg gaaaaggcgt
    13981 tgccaccgca tttggtgcaa tctccgcatt aagctttatt gttgcaggcg gtgctatcgg
    14041 cacttggcta ctggtgtttt taatctccgg ctattcttct ttaagtgccg tcttcactgc
    14101 cttggtcgta ccgttttaca tttggtggtt cgagccacaa tttactttcc ccgtcgcctt
    14161 agtttgttgc ctattggttt accgccatca cgataatatt caacgcttat ggcgtgggca
    14221 ggaagacaaa ctgtgggata aattcaagaa aaatagagca taaaaatagg catagtgaac
    14281 cgttcgctat gcctatttgc aaattattgc ggaaaaatca ccgcttgtct tctcgactaa
    14341 accgctaaat ctgcttcatc tcctcgattt tgtagccatt gtttacgatc ttccgctcgt
    14401 tttttaccca atagcatatc cataatttca aaggtattca attcgccctc ttctaccgtg
    14461 tcatcaaagg ttaattgtac taagcggcga gtgcttggct ccatcgtagt ttcacgcaac
    14521 tggctcgggt tcatttcgcc taagccttta aagcgttgca catttggctt tccttttttc
    14581 ttggcaaggc gagctaaaat cgcctctttt tccgcctcat ctaaggcata atgcacctca
    14641 tctttgccga tatcaatgcg ataaagtggt ggcattgcca cataaacgtg tccgttttgc
    14701 accaatttcg ggaaatgacg aaggaataac gcacacagca aggtggcaat atgcaaaccg
    14761 tctgaatccg catcggcaag aatacaaact ttgccataac gcaactcttc taaattatcg
    14821 ctatcagggt caattcccaa ggctaccgca atatcgtgta cttcttgtga agccaatact
    14881 tggtctgatg aaacctccca agtgtttaaa atcttaccac gcagtggcaa aatggcttga
    14941 tactctttat ctcgagcttg ttttgccgaa ccgccggcag aatcaccttc taccaagaaa
    15001 agttcggtac ggctgagatc ttgagctgta caatccgcca gtttgcccgg taaagccgga
    15061 ccactcacca atttcttacg caccactttt ttcgccgcac gcatacggct ctgggcggaa
    15121 ctaattgcca tttcagcaat taatttacct gtctgcacat tttggttaag ccataaacta
    15181 aaggcatctt tcaaggtgct atccacatag cttgaggctt gacgggaaga caaacgctct
    15241 ttggtctgcc ctgcaaattg tggctcttga attttcagag aaagcacata agcacaacgg
    15301 ttccacacat catcagcggt taattttacc cctttcggca ataaattatg gatttcgcaa
    15361 aactccacca tcgcctttaa taaaccgtta cgcaagccat taacgtgcgt gccgccttgt
    15421 gcggtcggaa tcaggttcac atagctttcc gctactaact cgcccccttc cggcaaccaa
    15481 gttaatgccc agcttaccgc ctctgtttca gcagtaacat caccaataaa cggtggattc
    15541 ggcacggttt cataaccgtt taatgcctcg ctcaaataat cagataagcc gtcttcgtaa
    15601 taccaacttt cttcggtatt gttgatttta tcaataaaat tgatggtgag tttcgggcaa
    15661 agcaccgctt tggctcgtaa caaatggcgt aaacgactca ccgaaaaacg agggctatca
    15721 aaatattttg ggttcgggta aaaacgcact gtcgtgccgg tctgtttttt cgggcaagta
    15781 ccaattaccg tcagatcttc cacttttacc ccgttggcaa aggcaatcga atagacttct
    15841 ccgccacgtt taatctgaat ttcaacccgt tcggacaggg catttaccac cgaaatcccc
    15901 accccgtgca aaccaccgga aaacgtatag tttttattgg aaaatttacc gccggcgtgc
    15961 aatttcgtta agataagctc cacccctgaa attttctcgg tggaatgaat atcgaccggc
    16021 attccccgcc cgttatccac cacttccaac gaattatcag catgaagaat cacatcaatt
    16081 ttatctgcaa agccggacaa cgcctcatcg acactattat caatcacctc ctgccccaaa
    16141 tggtttggac gtgtggtatc cgtgtacatt cccgggcgaa gctgcaccgg ctcgaggtct
    16201 ttcagaacgg taatttcatc cgccccatag cgtttttcag acattatgct ttctcttagg
    16261 cttaaaataa aataaggctg aattttaagg aatattcagc tattttgcaa aattttggtg
    16321 aaaaatgacc tgttgttatg caataaaaac tatttttgcg atctacatcg aaaaaatgag
    16381 ttttaatttc cctatttgct tattcattca gtatcttaat ctcacttttt attttaaaat
    16441 ggtactatat tatggtagta aaaatcctaa agcggaaatc tcaaaagaca ctacaacaaa
    16501 tctacaccca gcctatttct gccaatatta aatggacaaa tatagaagct ctttttctag
    16561 agttaggagc agaaatagaa gaacgagaag ggagcagaat tgcagttgtt ttatttcaac
    16621 aggtcagagt atttcatcgc ccacacccga atcctgatac agataagggg cggtagcgag
    16681 tattaaaaaa tggttatctg aaaacggagt cattccttat gcgtaatatt atggatatta
    16741 atggttataa agctgtcatt gcttacgatc ccgaaacaga attatttcga ggtgaattta
    16801 tcggattaaa tggtggagcc gatttttatg ccgataatgt cattcaatta aaaaaagaag
    16861 gtgaactaag tttgaatatc tttttagaac tttgtagaga aaaaggtatt gagccgttca
    16921 aacaatattc cggaaagttt aatgttcgcc tttcgcctga attacataaa gctgcggtaa
    16981 ttgcagcaac tgctgaaaat ttaagcttaa atgaatggat taaccaaacg ttagaaaaga
    17041 gcgtgtagcc taattgcaaa acaatcacct attttgaccg cttgtattac ccgtttaacc
    17101 cattcaatat cgaacactcc gaattggcgt tgccacagca agagctactc cagcttttga
    17161 gcaaagtcag catttggttt aaatcggcaa ttttttgttc aagctcaccg atatgctgtt
    17221 cggttaattg ttttacatct cggcttgagc ggtttgggtt gtcgtttaat ttaagtagtt
    17281 cgctgatttg agccagcgaa aagcccactt ttcgggcatt gctgataaaa tgtaatcggc
    17341 tcaaatcagt agcattgtag aatcgatacc ccgcttcggt gcgacttgtc ggcggcagaa
    17401 gtcctgcttt ttcataatct cggatttgtt tggcggaaag cccggttttt tctgcggctt
    17461 ggctaatatt cattataatc ctctcacttt aatcgcttga ccttaaccta aggttaagct
    17521 ttattatacg cctgaataat cactcaaaac aggagaaaat gatgacaatt accctacaac
    17581 ttgatggctt acattgtggc aactgtgtga aaagtgtcga aaaagcgtta aatggcgtgg
    17641 ctggggtgaa ccaagttagc gtaacgttag aaccgcaaat tgctgtggtg gaaggctcag
    17701 cagaagcaca agccttaatt gaagcggttg aagacattgg ctttgacgca aaattagcct
    17761 aattaataag gggcagaaat tttgccctaa tctgcccaat atttcggagg ataaatgaca
    17821 agcacagctc actattcgcc agaacaacaa cttttgattg atggaatgca ctgtgccgcc
    17881 tgtgttcggc gagtggaaaa agccttactt aaagtggaaa aggtggaatt tgcctcagtc
    17941 aatcttgccg atcaaaccgc ttttgtgcaa ggcaacgcca accctgaagc cttggtagca
    18001 gcggtagtta aaatcggttt tggggcagaa gtgctggaaa gcgaggaaga acgccgaatt
    18061 aaacaacaag cccaaacgca acgagtgtta gggcataaac gcactcaatt tatgcttgcc
    18121 cttgtagttg gttttgcctt agttgctttt gggttctaca aaggaatgac ggtaaacgaa
    18181 accaatcgtt cgctttggct cagctgggca ggtattagcc ttgcgacaat gtatttttca
    18241 ggtaaagatt tctttcttgg ggcattttca gcactgaaaa accgctcagc caatatggac
    18301 atgttagtag caatcagcac cggcacggct tggctctatt cttgttggct cacgcttttc
    18361 ccacaaccga atgctcacgt ttattttgaa gccagcgtga tgattctcgg ctttatcaat
    18421 ctaggaaaat acttagaact gaaagccaaa cagcgttcct cgctagcatt ggaaaaattg
    18481 ctggatctcg ccccaaaaca agcggtcatt tttgaagaaa atattgcaaa aaccattccg
    18541 gctaaagcaa ttaagccaca aatgcgggtg caagccttaa ccggtgaccg cttggcggtt
    18601 gatggtattt tagacagtgg ctctatttgg gttgatgaat caatgctcac cggtgaagcc
    18661 ctacctgtag agaaaaaaat cggtgataaa gtgcgagccg gcactctggt gcaagacggt
    18721 tcaggcactt acattgccga acaggtcggc tcacaaaccg ctttggctcg tgtaatcaat
    18781 gccgttcgcc acgcccaaag cagcaaaccg ccattggcac agtttgtaga taaaatcgcc
    18841 gctgtttttg tgccggtggt ggtttcaatc gcattacttt ctgcgttaat ttggctggca
    18901 gttgggcagg attttgcctt tgcactctcg atttttacta ccgtgttgat catcgcttgc
    18961 ccttgtgcat tggggctggc aattccgctt tctaccattg ccggcgtggc acgttctgcc
    19021 gaatttggcg tgctggtgcg aaatattgag gcactacaag caagcagtga aatcgacacc
    19081 ctagtgttcg ataaaaccgg cacactcacc actggcagaa tggaagtgtc ggatgttctc
    19141 acctttaacg gatttgagca aaagcgcttg ctacaacttg ctaaaagtgt agagcaacac
    19201 gcctcacacc cgattgcgaa agcgattgca aaatttgccg aaaatcagac cgcttgtggt
    19261 gtaaccgatg tgcaagtgtt gaaagggtta ggcatttcag caaaatatga aggcagtaca
    19321 atcagaatgg gaaattggca atttgtaggc gaaaccattc aagcaaatct tgcctcccta
    19381 ttgcccgcta aagaggggga tttttcctca aaaatttttg tttcggtgga taatcaactc
    19441 gccggtgtat tgtcggtttc agaccaactt cgccctgaag cgaaagcaac cattcatcaa
    19501 ttccaagcgg aaggctatca atgcgtgatg ctgaccggtg atcgccaaca aactgccgac
    19561 tatttcgcca acgcattggg gttagacggc gtgattgcgg aggtattacc ggagcaaaaa
    19621 gcggaaaaaa ttcgagcctt gcaagcagag ggtaaaaaag tagcaatgat tggcgacggc
    19681 ataaacgatg ctccagctct ggctcaagcc aatgtgggca ttgcgatgca caatggttca
    19741 gatattgcag tggaaaccgc cgatctttcg ctgatgcgag aagggctagc accactgatg
    19801 caaattctac cgttctctaa aaaagtgctg aaaaatatga agcaaagttt gctcggggct
    19861 tttatctata atgttattgc gattcctatt gctgccggcg tgctttaccc tttcaccggc
    19921 tggctactca acccaatgat tgccgccatt gcgatgacat tgtcgtcaat taccgtggtg
    19981 ttaaatagtc aaaggttgtt gaaataattt aagcggtcaa atttgcatat ttttttgcaa
    20041 atttgaccgc ttgtaatcac taatccgcca aaaacagcgg cccaagaggt gttttcggaa
    20101 tgccaaaatg ctcagggtaa tgcacctcga ccaaatatag cccctcggct ttcgctgtag
    20161 gggcagcttt ttcccggtca cgttgctcca acacccattt tgcccattcc acaggctgtc
    20221 tgccttgccc gatttcgagc aatgttccca caatattgcg aaccatatga tgtacaaagg
    20281 cgttggcttg aatatcaaca atcacataat tgccttgccg agacacattt aaatgatgaa
    20341 tattccgcca cggcgtatta gattggcatt tggcggcacg gaaagaggaa aagtcattct
    20401 cgcccagcaa atactgccct gcttggtgca ttttgcgttc atcaagggga aagtgaaagt
    20461 gggtaacacc tttaggtaaa attgccgacc gcagtttttg gttaaaaata atatagcggt
    20521 aacggcgggc ggtggcacta aaacgggcgt gaaaatcctc attcaccgct accgcccatt
    20581 tcaccgcaat atcatcgggt aaatgagcgt tagtgccgaa acaccagctt tgtagcgggc
    20641 ggtttgcttg cgtttcaaaa tgcacgacct gccctgtgcc gtgcacaccg gcatcggttc
    20701 tgccggcaca aaacacttct acgggcgaat tggcaacaac cgacaacgcc tgctctagct
    20761 gttgttgtac actctctacc gcttcttgtc gttgccagcc aaaataacgg ctgccgtcat
    20821 attcaatacc taatgcgatt ttcattttaa taccttgata aaaagagggg cgaaaaattt
    20881 ttcgccccca cagtaattga tatttgcaat tatttattca ataagcctaa aaattctttg
    20941 cgggtttctc ggtcttctaa gaaaacaccg ccaaaggcag aagtaactgt atagctattg
    21001 gtgtctttta tgccacggca tttcacgcaa aaatgggtgg ctttcacata caccgcaaca
    21061 tcgtctgttt ctaaaatagt ttgaaaggca gttaaaatct gttcggtaaa acgctcttgc
    21121 acctgcggac gttgggcaaa aaactgcacg acacggttga ttttcgagag tccaatcacc
    21181 cattttttcg ggtaataggc taccgctact ttgccgtcaa tagtaacaaa atgatgctca
    21241 caggtagaag ttaaagtaat atcgtccacc agcaccattt cactgacttt cattcggttt
    21301 tcaatattgg taattttcgg gaaggtagca taatcaagcc cgctgaaaat ttcatcaaca
    21361 tacattttcg ccaaacgatg aggcgtttct tctaagctgt catcacttaa atctaaaccg
    21421 agcaattcta aaactgcctg catatgctgc tggatttctg ctcggcgact ggctttatct
    21481 ttggtatgag taacagtcgg agtttcaatg ccttttgcca acaaggcttg gcgaactttt
    21541 tgagcctccg gcgaaagcgt gttttctgtg atagttaatt cgggcgagat cgttgtcatt
    21601 ggttttcctc tcaaatgtaa gctgaagatt ctaacaaatt gacatcaaaa aaaatagctc
    21661 taaaatgagc tatttcagcc ataaacaccc tctttattta tgcaaaatat acagtatctc
    21721 tttaatgccg acctgattcc cgaacatcaa gctgaatttg tgcagtctct cttaacttgc
    21781 aaaaattttg acaattccga ccgcttgcta ggcttctcaa aagggcgagg tacgacttgg
    21841 tttttagata cctctgctga actaggtatc aatgtggtgc ttcgccatta ttatcgtggc
    21901 ggcttgttcg gtaaaatcat caaagatagt tactttttta ctcgctttga ggccacccga
    21961 gcgtataaag aatttttctt actgcaacaa atgttagctt ggggtttacc tgtgcctcgc
    22021 cctgtggcga ttaaaataga aagacatttt tgttgctatc gtgccgacat tatgctcgaa
    22081 aagctagaaa acacacaaga tttaagcaaa atcttgcaat cccattcttt atcgaacgaa
    22141 caatatgagc agatagggaa actgattcgc agtctgcata accatcaaat tcaccattcc
    22201 gacttaaata tccataatat tttgcttggt aatgatggca aattttgtct gattgatttt
    22261 gataaatgcg gcattgagcc gggcgaaaat tggaagcaaa ataacctaga ccgcctgtta
    22321 cgctcgttta agaaagaaca agggcgatta aatattttct tcagcgaaga aaattggcag
    22381 gctgttttga gaggatatac tctctaagaa acaataatgg cacaagctta gaaacttgtg
    22441 ccatcaaatc atcaatatta actacttcac ttcacgaatc ataatttcag acggaatcac
    22501 actgccttgc cagtaaagtt cagaagctac tttttccgct aatgcgaggt aggcttggct
    22561 gatttcgtgt tccggagctg ccaccaccgt tggcacaccg ctatctaaat cttcacgcag
    22621 acgaatatgt agtggtaatt gtgctaacac tttagtgcca tatttttggg cgattttttc
    22681 cgctccgccg gtgccgaaaa ttgcctcatg gtgtccgcag tttgagcaga tatgcattga
    22741 catattttca atcaccccaa gcactggtac tgagactttc tcaaacattg agatcccttt
    22801 aatcgcatct aataaggcaa tatcttgtgg ggttgttact accaccgcac cggtcaccgg
    22861 aatttgctgt gaaagcgtaa gctgaatatc acccgtaccc ggtggcatat caatgaccaa
    22921 gtaatccaat tcattccacc aagtttcatt taaaagctga cttaacgcac tgcttgccat
    22981 cgggccacgc caaatggtgg cgttatcttc ttccattaaa tagccgatag aattagattg
    23041 caagccgtga gcggtaatcg gcgtgatgtg cttgttatca ggagaagttg gacgttggtc
    23101 ttttgctccc aacatatgcg gaatagatgg gccgtaaata tccgcatcta aaatccccac
    23161 tcttgtccct tgtgctcgta aggctaaagc aagattaact gaggtcgttg atttccctac
    23221 cccacctttt cctgaagtga ccgcaatgat attttttacc ccattgactg ccgggtgttt
    23281 attcgcccgt tttaaggtcg caatttggta atttaatacc cattttacac cgcttgaacc
    23341 tgttacttgc tttaatttag cctctgtttc ggcttttaag gtttcaaaac cactgttcca
    23401 cgcaaatggc atcgtgattt caattctaag aatatcgccc cctaattctg cttttttaaa
    23461 cgcattaagg gcaattaaat ctttctgtaa agtcgggtgg gaaaattgtt gcaagattgc
    23521 tttaatttca acaagttgct gttcatttaa ttggttcatt ggttatcctt gtttgctaaa
    23581 ttgcgtttta aatctttgct ataaattact tcgctatcgt tattcaaatc aatacccaaa
    23641 agggaggaaa caatcccaac ccgatgatgg tattgaaata atggcaatac ggcaacatcg
    23701 ctataaagct gctcgctaat ttcttgaata agtgactctc tcgcttctgc actaagcgtt
    23761 tctgtttgta aacgatttaa tttttgatcg actatctcac ttttatagcc ggaatgatta
    23821 tccgggctca ttgaatgaaa cttctgcaaa aatacaatcg gatcaggata atctgcacac
    23881 cagcctgctc gtgctatctg gtaatctttt tgttccctta ctttatttaa agtctgccaa
    23941 tcaaccattt taggtgtaat attaaataat tctgattgag aaagggctcg agtaacttgg
    24001 ttagcaatat taatgctatt ctcatcatat aacaaagtca gctttaaagg attataaggg
    24061 ctaattcctg cttttgttaa tagctgctca accacaacag gattccaacg cttttctcta
    24121 tcttttacta agctatgtgg aattacagac tgactcggaa ccccatattc ttgcccacta
    24181 tttgctgaag ccaccattgt ccttattgct tcacgaatct ctcgtttagc taataatgga
    24241 tcatcaaaat tgaactcata gtaataagag cacaaacgcg gaaatttcac gatattcgtt
    24301 tttttattta ataaaggatt ctcgacaata tcaaaagcag agcagttttg gatagttgta
    24361 attaaatcat actctatagt ttgaaaggga atttcttggg ttcgagcctt taacaccatt
    24421 ttttgagcat ctagtttctc gagacggtaa gacgcattgc tcacgaagtt atctatggtt
    24481 ggagcaatcc cttgataagt aggtaataat gcggaatgtg ccagcatttc aggcaattgg
    24541 tgatttgggt gatttagccg aattctcaat gtatgcgcat ttaatgcctc tacaccgagt
    24601 tcttcaactg actttatttg ctcttcaatc gcttttgcat tttctatacc catatagatg
    24661 agatatttag acaatacaga atgattttga ggatctatta aacgtcgcca gcttgctaca
    24721 aaatcttgtg cagtcacagg ttggccatta gaccacacag ctttctcatc taaaataaac
    24781 aaccactctt tttcatcttc agtaaaccaa ttctgagcaa tggccggaac gacatcacct
    24841 tttctgttgt aggccgttaa accgactaat agatctctta aaggagcagc atctgcagaa
    24901 gctttaattt tatgtgggtc gagttgaaat acagcagaat aaattgcacg tttgagtaaa
    24961 gtatcactct gccggttttc tacccagaca gattgaatgg attgagggca aattaattga
    25021 tcacaagatg taataagcag aatgcaagcg gtaacttttg caattttttt tacaaatgta
    25081 accgcttgta aggatttcaa cataaactcc ccaaaggtta attaagattt attttacaag
    25141 aagcacagga aataaagttg taattcctgc cacaataatt tcaattccca gcgccattaa
    25201 aatcagcccc atgatacgag taacgacatt agatcctgtt ttgcctaatt ttttcaccaa
    25261 aggggctgaa tagcggaata aaatataaca aattaatgca aatacaataa tcgcaatgct
    25321 aaagccaaca tagtcttccc aagtatggta gcgggttccc cacacaatgg ttgagccaat
    25381 tgcccctggt cctgccataa tcggcattgc taatggcacg acaccgatat tttcgtattc
    25441 agtaatatct tcatttttct cttctttatt ttgtttgtgt tcacctaatt taccgctaat
    25501 catcgtcatc gcaatgctta caatcaaaat gccaccagct actctaaaag agctaagtga
    25561 aatgctaaac gcattgagaa tcagattacc aaaatagagg ctgactaata aaattactcc
    25621 aatagaaaca gcggtgatta agctggtgcg atttctttcc ccctcatatt ggtgagcggt
    25681 catactgaaa aaaataggca aggaaccaaa aggattgact atagcaaata gaccaatgaa
    25741 gaattggagg tagatggcaa aattaataat gatatccaca aaaactttct caaacaacag
    25801 tgtttcgggc gctattatat cggttaatca aggtagatac aaaccaaaag cacccagcct
    25861 aaaggacggt tgggtgcttt ttgataaaat gaaaggcttg ttagtgtgac gaacgttgct
    25921 gcataaaatc ttcatttacc tcaattgaag cttttgcacg tagcgattgt aagaattcat
    25981 tacgtaaaat taaacgatta gcttgttcaa attgtggcgc caatgtctta aactgttcag
    26041 cattcccttc cgtaatgtta tctaaggcaa caataactac atcgcccttt tgattacgtg
    26101 ccatttgata agtcgtttta tcttgcgcct ttttcattgc gaaaatcgtt ccagccaata
    26161 ccgggttttc tacttctgct tgcatataaa ctaaagtttg tggcgcatta aatttcacgt
    26221 ccactgattt cccttcattc aaggctttta cattttcttc tactttcgcc agcaacgctt
    26281 tttccgcttt ttctgccttc acaaaatttt caactgctgc ttttgcttca tcaaaagttt
    26341 gtggacgttc tgcatcataa tcactcactc tcacaaacaa tgtctgtgga tttgcatcat
    26401 tcccaacatc taaagcatca gaattttgtt tattttggcg tagctctcct tcaaacaaaa
    26461 cttttaatac tttctcattt tgtaaagcag taggtacgtt ttcacgggta aacagatccg
    26521 ttttttgcag ttccacatta ccggctttcg caacttcttc aagtgaagaa ttattctcaa
    26581 aggctttatt tgccatttcg cgcgcaactg taaaatactc agttaacact aattcttggc
    26641 gaatagtttg ggcaatttta tctttcactt gtgctaactc aatcacttgc tcaggtttac
    26701 gctccaatac tttgatgata tggtaagcat tatccacttt caccgctgca ctcatctggc
    26761 cggcagttaa atttgctaca gcatcttcaa aagctttcgg gaaagtgcca gcttttgccc
    26821 aacctagatc accaccatta tttgctgata aagtatcgct agatttgttt tttgccaaag
    26881 tagcaaaatc ttccccattt ttgagcgctt gctcaatagc ctgtgcttcc gcttcactag
    26941 cgacttgaat atgagctaaa tgggcttcac ctttagttac ataatcggct ttattgcgat
    27001 catagtaagt ttgaatttgc tcattggtaa tctcaacttt gctttccaca tcttttggag
    27061 aaagagtaac gtactcaacc gctaattttt caggtgctaa taatttagtt ttatttgctt
    27121 cgtaataggc tcgcaattct tgctcggaag cggtctgatt ttccatttct tttgcaactg
    27181 aaaattcggc taaacgcact tcacgttgtt gcaacagtaa ttttgctaac aatgcctgct
    27241 gtgccggtac attaaaatca ctattgataa tcccctcttg tagctgggat tgcaacatac
    27301 cttcctgcac aatcgctgca tagccatcgg cacttaaatt attgtggcgt aatgtttgtt
    27361 ggtataactc gttactgaat ttaccatctt gttgaaacat ctggctgttt acaatttcag
    27421 atttgatttg atcagcacta atacctagtt ttaactcttt tgcatactgg cgcagaagct
    27481 cttcatcaat taatccattt aataccgatt gattaaattg agcagcatac tccgggctat
    27541 ccattaaatc ccaaaagcga ctccccagtt cagcatttaa tctattttgc tcacgattaa
    27601 gcgtgttatt aaataattgc tgactaattt cttccccatt tactttcgct acagaattat
    27661 cttgtgaaat caatcctgtc ccaattccac cgattacaaa tgaaatagag actaatgcaa
    27721 aaataatttt aaagaccggc ccatttgtcc gctcgtgcat tttttcaatc atttaaaaat
    27781 tcctaaatta ctcaaaaatt gtcgctgatt atactctttc tcaaatgaga aataaacttg
    27841 caaattttta ttgaaattta accgctttct ctttaaaatt cacagtccct gtcgtagctg
    27901 agttagagat cggctattga tgtattatca acccttaaca aaaggaaatt aaaatgtctc
    27961 taagcgtaga agcaaaagca aaaatcgttg ctgaatttgg tcgtgatgca aaagacactg
    28021 gttcttctga agttcaaatt gcattattaa ctgcacaaat caaccactta caagcacact
    28081 ttgctgagca taaaaaagat caccacggtc gtcgtggttt attacgtatg gtttcacgcc
    28141 gtcgtaaatt attagactac ttaaaacgta ctgatcttgc taaatattcg gaaactatcg
    28201 cacgtttagg tttacgtcgc taatttcaaa tattagatat gagagccgag ctgaaaagtt
    28261 cggctttttt ataaatttta ttcgaggaaa aaatatggct tttgcgtcat tatttacatt
    28321 attagacgat attgctgccg tgcttgatga tgtatcgatc atgactaaag tggctgctaa
    28381 gaaaacagca ggcgtaatcg gtgatgatct tgccttaaat gctaatcaag tcagtggaaa
    28441 gaatgtggtg ccagaacgag aactaccgat tgtttgggct gtagcgaaag gctcattaat
    28501 caataaagtg atcttgattc cactagcgtt gctgctatcg gtctttttac cgcaggctat
    28561 tatcccgcta ttaatgatag gcggtgcata tttatgtttt gaaggcgtag agaaattact
    28621 ccatcgtcta ttacataaaa acaatcaagc tcattctgat gaaaccgaaa ccctttctga
    28681 aaaagataaa attaaaggtg caattcgcac cgattttatt ctatcagcag agattatcat
    28741 tattgcgtta ggtgttttgc aagactcttc aaccctaacc caaattttat ctctctccgc
    28801 tatcggggtc ggaattaccc tgtttgttta tggcttagtt ggattaattg taaaactaga
    28861 tgatatcggt ttatggttaa tgcagaaaaa aagcacattc tcacaagcgg ttggaaaagg
    28921 cttattattt gcaatgccgt ggtttatgaa aggactttct gtgattggta ctattgcgat
    28981 gttcttagtc ggtggtggta tttttaccca taatttacca atgattcatc acttcgtaga
    29041 acaattcggt atctctcccc atttttctac tctggttgat tttgcagtgg gtattgtggt
    29101 tggtattatt gcatgcttaa ttattttacc tttgatgaaa ttattttcta aaaaggcgca
    29161 ctaatcccca aaagcgtagc tttggttaaa gctagctttt tatctcttgc tataaaaaaa
    29221 tagcaggttt caagcctgct atttttttaa ttattataat gagttagact cagtggctgt
    29281 ttgcggtaag gctaatggct cattaacttt agactgagta gccatattca cctgtttgag
    29341 attttcctca cgaatacggt ttgccattaa tgtatccccc atctgctctg ccacgtgcag
    29401 tgccataata cgatcatcag caacacattc atcatgagcc aataacaatt caaactgaga
    29461 cttcgctttt tggtattgcc catctcgtgt ataaatatag ccaagcgctc tagcataatc
    29521 atcggtatat ttaacattcg ctttatctgc ccgttttgct aatactttta gtagcttact
    29581 gtcagaatca atttgtaaac gggttaattg cacaaataaa ccttgtaatt gctcatcttc
    29641 aaatttcttc aacgtttcta aagcaatttc ttgtgcagat tgatgatcgt cactatcaat
    29701 taaacgcttg atgacaccga cacgactata caccgattta cgacgacgat ttggttggtt
    29761 ttcccaccaa gaaagcaagc cttcctgccc ttcttcctgt aaacgctcat cttgtaaacc
    29821 atcatcaacg aaatactcta actcagcata ctcttctgca gttaagaaat tacgttggcc
    29881 gatttcaact aataatctat ctaacgcaac ataagctctg gattctttat aaatttgaat
    29941 cgctaagcgt aatacctcat cgctatgagg tgcaagctct agtaggctat caatcgcagt
    30001 tcgggcagcc ggtaattttc cttgttgtaa taaaattcgg gttcgtacca actccactgc
    30061 aacattattc ggtccagcta tttcagttgc cttaattaaa tatttatttg cagctaaatc
    30121 atcaccattt tgctgagcag cttccgccgc tttaattaaa ttcagtacag gctcatctgc
    30181 atgttttgca tttttactaa agagtttttc cgcttttgag taattccctt cactcatacg
    30241 cattaaacct tccagtgttt cttgctgagc ttttttatgc ttacgagttg agaaccagtt
    30301 ataagctcca ttactcatac ggcatatttt agtgacaatc cattcaagta aataaactac
    30361 cgccattgcc aacacaaaaa aaaccacaag cattacaatg ctcatttcaa tcacggtagt
    30421 tgctgtttca attctgacat aaccttgatt tccggctaaa taaggcccag agattagtcc
    30481 aactaataat aaaagcatca aaaagagcgt tctaaacata atctattctc ctttttatta
    30541 ttgtgctgaa agaggcatcg catcttgctc tgcttttaca ggctctgctt gctctaattc
    30601 tttttcagct tttatttcga ctttctctat tttttcaggg gttttattaa gttgctgagc
    30661 aatcaccttt aagctttgta atgaagttgg agcatccaca taaatagttt gttctgccaa
    30721 ctcatctagc tctttcaaga aatgttgcac attttcattt gaagtttcaa aataacttct
    30781 tacccaagag cctaccgttt gtaacgattt tttataaagt tcgctttgct ggcgaggaac
    30841 agctaaaatc gcaatttgta aacgcaagcg aatgttttca cgcaaataaa tttcttgatt
    30901 cggtgcaaca aaggctttct catctgctgc attacgtttc gatacacgaa taaaatgatc
    30961 taaaaatgaa gcagcacttt tttctaaatt tttctcccaa tccgcaagag aatcacttac
    31021 ttgcccatct tgtttgctat ttgaagcttg ttcactttcc aaaatcggca aatcatctaa
    31081 tttattcgct aaatttgcga cacgctgcat taaggcattt tgatcgatct gatgcaatgc
    31141 ggttaatgta tttaaatcag ttttgattgc ctcacgaatg tgaatcgtat tcggtgcttt
    31201 tgataaaact tgatctgcct ctaacaataa atttttcgct gtttcaatgt cattatctaa
    31261 caccacttta cgagccgcat tattcaatag gaaatctgcc tcagataata gccagaatgt
    31321 gttatccgaa ccagaggtat tatttagctt ttgcagttga agctgcaaac tactaatttg
    31381 ctgggtataa ccattttggg ctgtttctaa agctttaatc cgttctaaag ctttttgata
    31441 ttccgtgacc aattcggcaa tttgtgcttt ttcattttcg aaatttggca tctcaaccat
    31501 agtttgagta gtaggctgat ttgctttagc agatactgcc tgaatttgag attcaacctc
    31561 tgcaaacttt ttatttgcca tataatgacc agctccgcca accgctaaag ccactaatag
    31621 tgcaactaat gccaagccct ttccgcccga tttttgaaca accacttgtt cttttggcgc
    31681 tttttgcatt tctgtttgaa tatctttctc tatagcttcg ttcactacat cttcctcaat
    31741 ctcttttttt gcaaaagatc ccgctgaatc gaccgcttgt tgtgcctctt ctaccacctt
    31801 ttcagctgaa tgctctaaat gttcagttac ttttttagat cttgacatac tcgccacctc
    31861 tagttagatt tgcccacttt aaataataat gtattcatca aagttacatt atcggcttta
    31921 tccgataccc taatcttatc ttcttgccag cccatttgtt tagctatctt tgcaatccgc
    31981 cggctcacta caaccagatc acattcaaat aaccatgctc tacaatctgc tttcgcttgt
    32041 tcataaagtg atcttaaaat ttcactactg gtgatcacaa tagtatctac tcccaagcgt
    32101 ttacataagc tgattttttc gggaatatca tcggtaaccg gctctctacg ataacactcc
    32161 aaatattgaa tagttgcccc acgcaagact gcagtttcag caagtagctc acgcccagaa
    32221 tcggctctta gaattaaaat agttttatca gttagattct gcatttcagg taatgccaaa
    32281 accccctcgc tattttcaaa ttctatcgga taaatgaccg cttgttcagc tttttctgtt
    32341 aaatatttcg cagtccgttg ccctaccgca aaatatttca aatctgaacg aaaatggaac
    32401 ccggtatcta ctaatgtttt tgcagcatag tccactgcat tcggcgaaac aacaaataca
    32461 taatcgtctg attttagccg agaaatagcc gaaggaagca aaggtaattc tttaccggct
    32521 tcaatcgtaa atagcggttg atgaatagca aaaatttgct gttcattcaa catatctacc
    32581 aattcttgcc cccgactatc caggcgtgtg accaacacat tcattattgt acgttttcgt
    32641 tataaaccgc agctaaaatt ttatctgcac cttgagcaag caactgttcc gccaccaaaa
    32701 tgcctaattg ctccgcctct tgcttatgtc cttttgccga agcccgaata atttgtgagc
    32761 catctaacga tccaactaac gcattaagcg ttaattcatc gccctctaat gtagcataac
    32821 caccaatcgg cacttggcaa ccgccttgca aacgggtatt cattgcacgt tctgccatca
    32881 cgcaacaagc ggtcgaacta tggtttaatt ttgcaatgta gttcaaaatc cgttcatcat
    32941 tggctcgagt ctcaatccct actgctcctt gaccagctgc gggtaatgat tgttccacag
    33001 aaatatagct acggattcgc tcttgcaagc ctaaacgaat taagccggca gaggctaaaa
    33061 taatcgcatc atactcgcca ttatctaatt tgcttaagcg agtgccgaca ttgcctcgca
    33121 atgatttaac ctctaaatgc ggatatttcg ccattaattg gcactgacgg cgtaagctcg
    33181 atgtaccgac cacagcacct ttcggcaaat cttctaacga atggtagttg ttcgacacaa
    33241 acgcatcacg gggatcttca cgttcacaaa tcaccgcaag ccccaagcct tcgggaaagc
    33301 tcatcggcac atctttcatt gaatgcaccg caatatcagc tcgattttct aaaagggcta
    33361 attctaactc tttcacaaac aagccttttc cgccaatttt ggctaatggg gtgtctaaaa
    33421 taatatcgcc tttcgttacc atcgtaacca gttcgacaga taattgcgga aaatgttttt
    33481 ctaattcgct ttttacaaaa tttgcctgcc ataaggctaa cgggctttga cgggttgcaa
    33541 tgcgtaaaat atctttcata aattctaaaa ttaaaacatt gagttaatga attatcctac
    33601 cactttttag ctgaactgcc aaaaataatc gtggatttcg ctttgcattt aatcaaaaat
    33661 ccgacttttt ctcaaaatgt atcaatgtct atatgactaa atattttata gcatatatac
    33721 aacgttaaaa aagttgatat agatcaaagc aaacataaaa cattattaat ttttaacgac
    33781 aaaataactc ttttgggtaa taatttcatc agttaaaaaa attatcaaat ttaaatttta
    33841 tgaggaacca aactatggct aaaaatacgc aaccatttga tgcccaagca gaagtgaatg
    33901 agcttgttga aaaaggctta aaagcccttg atgagtttag aaaactcaac caagaacaag
    33961 tggattttat tgtcgctaaa gcctctgttg ctgcccttga taaacacggt attttagcaa
    34021 tgcacgctta cgaagaaacc ggacggggtg tgtttgaaga caaagccact aaaaacctgt
    34081 tcgcctgtga gtatgttgtc aataatatgc gacatttgaa aaccgcaggg gtcattagtg
    34141 aagatgatgt caccggtatt accgaaattg ccgaccctgt cggtgttgtc tgcggtatca
    34201 ccccaaccac caacccaacc tcaaccacca ttttcaaagc gttaatcgcc cttaaaaccc
    34261 gtaaccctat cgtttttgct ttccacccgt ctgctcaaca atcttctgcc cacgctgctc
    34321 aaattgtgcg tgatgctgcc gtggctgccg gtgcaccgga aaactgtatt caatggatta
    34381 cccagccttc aatggaaggt acatctgctt taatgaaaca cccgggcatt gcaactattt
    34441 tagccaccgg cggtaatgca atggttgaag ccgcttactc ttgcggcaaa ccggcattag
    34501 gagttggtgc aggcaacgta ccggcttatg tagaaaaaac cgctaaatta aaacaagcgg
    34561 tgtatgacat tgtaatgtca aaatctttcg acaacggtat gatttgtgcc tctgaacaag
    34621 cggcgattgt agataaagaa atttacgctg agtttattaa agagatgcaa tcttacggcg
    34681 tctatttagt gaacaaaaaa gagaaagcct tattggaaaa atacattttc ggtattgata
    34741 aagccaaaga tgaaaactgc tcaggtgcaa aactcaattc agcggtggtt ggcaaaccgg
    34801 ctgcgtggat tgcagaacaa gccggcttta aagtaccgga aaaaaccaat attctgttag
    34861 ccgaatgtgc ctttgtgggc gaagctgagc cacttacccg tgaaaaactt tcgcctgtac
    34921 tggctctgtt aaaatccgac tccaccgaac acggtttgga attgtctgaa gcgatggtga
    34981 atttccacgg tttagggcat agtgccgcca ttcataccga aaacaaagcc ttagccaaaa
    35041 cctttggcga acgggtaaaa gccattcggg tgatttggaa ctcaccatca acctttggcg
    35101 gtatcggtga tgtatataac tccttcctgc catcgcttac gctgggctgt ggttcctacg
    35161 gtaaaaactc tgtaggtaac aacgttagtg cggtgaattt aatcaatatc aaacgtgtgg
    35221 gcagacggag aaataatatg caatggttta aagtgccatc aaaaatctac tttgagcgtg
    35281 actcaattca atatttgaaa tcaatgcacg atgtgcataa agtaatgatc gtaaccgacc
    35341 gctcaatggt tgatctcggc tttgtggata gaattaccga acaacttcgc caacgtcgca
    35401 accaagtgat gattcagttc tttaccgatg ttgaaccaaa cccaagcctg caaaccgtac
    35461 aacgtggtac agaattaatg cgtagcttcc agcctgatac tatcatcgca cttggtggtg
    35521 gttcaccaat ggatgcagcc aaaattatgt ggttattcta cgaacaaccg gaagtcgatt
    35581 tccgtgattt agtgcaaaaa tttatggata tccgcaaacg tgcattcaaa ttcccacaat
    35641 taggcagaaa agcgaaattt gtcggcattc caaccacctc cggaacaggc tctgaagtca
    35701 caccgtttgc agtaattacc gatggcgata ttaaatatcc gctcgctgac tactcgctta
    35761 ccccaaccat tgcgattgtc gatcctgcgt tagtaatgtc tgtgccgtct cacgttgctg
    35821 ccgacaccgg tttagacgta ttaactcacg ctaccgaggc ttacacatcg attttagcca
    35881 acgactatac cgacggctta gccttgcaag ccattaagtt agtgtttgaa aacttggaaa
    35941 aatcggtcaa agagtttgat gaaaccgccc gtgaaaaaat gcacaatgct tccacaatgg
    36001 cagggatggc atttgccaat gccttcttag gtatttgcca ctcaatggca cacaaaatcg
    36061 ggggtaaatt ccacaccatc cacggtcgaa ccaatgcgat tttactgcca cacgttattc
    36121 gctataacgg cacacgccca accaaagtgg caacttggcc aaaatacacc aattatgtcg
    36181 cagatgtgcg tttccaagat attgccagaa tgcttggctt accggcagaa accccggaac
    36241 aagcggtgga agcttacgcc caagcggtac acgatttagc cgttcgttgc ggcgtgaaaa
    36301 tgtcgcttcg tgagcaaggc gttgatgagc aagccttctt gaatgcccgc cgtgaacttg
    36361 ccctacacgc atttgaagac caatgcacac cagcaaaccc acgtttggca atgattgaag
    36421 atatggaagc gattatgact aaagcctact atggcaagga ataaagcaca atttaatcgt
    36481 taaacttact aaatggccgc ttgcaagcgg tcatttttct tgaaattttt acttttccct
    36541 tcacaaaata ctttcgctct tttacaaagc atagtatttt tatcgctcct tttatcttac
    36601 aggaaatact atgcaaatta cgattttaga cggcggaatt agccgtgaat taatgcgtcg
    36661 caatgctcca tttcatcagc ctgaatggtc tgctgccgct ttgtatgaag gcccacattt
    36721 tgtgcaagcg gtacacgaag attttatcgc tcacggggca gaagtgatta ctaccgacag
    36781 ctatgcggtt gtgccgtttc acattggcga aaaacgcttt gcggcagacg gcaaaatgct
    36841 tgccgattta gccggtcgcc ttgccaaaca agcggtcaaa aattcaggaa atattgcaac
    36901 tcaaattgca ggctcacttc caccaatgtt tggctcttac cgtgccgatt taattcaaat
    36961 ggaacgcttt gctgaagtcg ctcagccttt aattgacggg ctttcgcctt atgtggatat
    37021 ttggctttgc gaaacccaaa gtgcgattat tgagccgatt tccatcaaag cattattgcc
    37081 gaaagacaac cgcccgcttt gggtctcttt taccctcacc gatgatgaac caaccaccga
    37141 gccacaactt cgctcgggcg aaagcgttaa acaagcagtc gaagaaatgg tgaagttagg
    37201 cgtgcaagcg attttattta actgctgtca gcctgaagtg atcggcgagg cattaagtgt
    37261 aacccaaaaa actttagccg aattaaaagc tacccatatt cgcacaggag cttatgccaa
    37321 cgcctttgct ccacaaccaa aagatgccac cgccaatgac ggtttagatg aagttcgcca
    37381 agatttaacc ctggaggctt atttaggctg ggcaaaaaaa tggacggaac aaggggcaac
    37441 tattatcggt ggctgctgcg gcattggggt tgagtatatt gaaacgctgg caaaaaattt
    37501 aaaataagga aatcgaatgt caaataaaaa aataggatta atttcactca ccgccttagt
    37561 gctaagctca atgattggct cggggatttt cagcttaccg caaaatatgg cagccgttgc
    37621 cggagcagaa gccattacca ttggctggct gattaccggt gtcggcatta tctttttagg
    37681 tttatcgttt ttctttattt cccgcttgcg tccggattta gacggtggca tttacaccta
    37741 cgcacgggag ggttttggcg agctgatggg ctttatgtca gcgtggggct attggctctg
    37801 tgccaccatt gggattgtag gatacctcac cgttgctttt gaaggtttgg gtgtatttac
    37861 cgacaacccg aacaccgtga ttttcgggca aggtaacacc ctcgcctctt ttattggatc
    37921 ttcaatcatt gtgtggctgg ttcacgccct catcgcaggc ggtatcaaag aagctgcctt
    37981 tgtaaactta attgccactt ttgtgaaagt cgctccgctc attctgttta tcgggttagg
    38041 catttggtat ttcgatgtgg atctgtttaa tagcgatgtt aaagccaccg cacttaataa
    38101 tagtgtaagc gaccaagtga aaagcacaat gttaatcacc ttatgggtat ttaccggtgt
    38161 ggaaggggct tctgtgctgt cggctcacgc gaaaaagcgt tctgacgtgg gactggcaac
    38221 cgtattaggt attattattg cacttgctct ttatgtggca attaccattc tttcactcgg
    38281 aattctgcca cgggaaacta ttgccaatat ggcaaatccg tcaatggggc cgttgctcga
    38341 tgcaatgatg ggcccaaccg gcaaagtgat tattactgct tgtttaattg tatcggtgct
    38401 tgcctcttac attagctgga cgatgtattc ggcagaagtg ccttatcgtg gctcaaaaaa
    38461 cggggctttc ccgaaaattt tagacaaagt gaataaaaac ggcacgccga ttaactcact
    38521 ctggtttacc ggctttatcg tgcaattttg cttggtgttg gtgtttgttt ttgagcaaag
    38581 ctataacacc ttattgctga tttccacctc gatgatttta attccctatt tcttaatcgg
    38641 ggcttattta ttcaaattag cgattcaaac caacgccact tggtacatta aactcaccgg
    38701 ctttatggca gccctttacg gattatggat tgtctatgcc gcaggactag aatatttgct
    38761 gctttcggtg gtgctttatg tacccggaat tttactcttc ctctactcca actataaatt
    38821 caacggcaga ttaacccttt caaccgctga aaaggtcatc ttaatcgtgc tactggtaat
    38881 ttttggctat gccgtgattg agctgccagc actattagca gcataattcc catcaaaaat
    38941 gaccgcttgc aagcggttat ttttctagga tcttctgcaa agattcatta gaatagaaac
    39001 aacgtcaata ataaataaaa agaggagaaa caatgcaaac ttatcaacat aaagcccttt
    39061 gtcgggtaag aaccattacc ctttttctga gtttaaccaa agataaattg cagtgggaaa
    39121 cggcattaaa tgcggcaaaa gcagaatttg atctattagt tcccgctatt caaacacaag
    39181 gctatcacat acaatcgatt cgaatcgtta ccaacagttt cggggaatat cttgatctca
    39241 ctaatattga aacagcgaaa caggatttag cctatcttaa acagctatta acccaactta
    39301 acgatagcgg tttacgcatt cgctttgcca ttggtgaggc aaaaacaccc cacgaattag
    39361 cattactacc tgagctgatt ttaaattatg gtgatttatc taacgcttgt gtcaatattg
    39421 aacccgatga atttgggatt ttagacaatg aaaccatttt acaatctgct caaattatca
    39481 aacaaatcgc tgaaattacc ccaagaggtg aaggcaattt taattttacg gtgaatttta
    39541 actgtaaacc ttttattcct tattttccgg caagctacca ttcaagcaag ctccctaaca
    39601 gttttgtgat aggcctagaa acaccagatc tattagtagc ggtgttaaaa gagctgaaag
    39661 ccagcccaca taacgacttt tatcgccaat gctatgaaac gatgtctcaa gccttgcaat
    39721 atcacgttga tgaagttctc gaagcagtaa aatcggtaca acacaaatta caatttgcct
    39781 ttgctggcat tgatagttct gctgctccgt caaaaaactg tgcctcaatg acagaagttt
    39841 atgaattaat gggcgtacca ttttttgggg cagccggaac agtagaagcc tcttcacttc
    39901 tgacaaaagt ctttaaatct atcaaacatg taccgcttgt cggtttttca ggtttaatgt
    39961 tggcagtaac cgaagattta ggcttagccg caggcacaca caaagcccaa ttcgacattc
    40021 gtgctttact aacttatagt gctgtttgtg gcattgggtt agataccgta ccgatttcca
    40081 atgaagccac tgttgaacaa attgccgcat taatgcgaga caccggcaca atggcattta
    40141 gactaaataa accgcttaca gtacgtttat ttccaattcc gaataagagt gctggggaag
    40201 tgacagaatt tgaaagtgat gatttatgta actgccgaat tttagctgta ccttaaaata
    40261 aaggctgatg gatatttcca tcagcctttc aatttacttc accttcaatt ttttacctac
    40321 cgtgatctga taatttttca aattattcag ctcactgatt ttttgcggcg tagtaccgta
    40381 agctctagca atcgagtaaa ccgtttcatc ttgttggaca atatggtagc cactgttaga
    40441 caccttaatt tctctttgag agtctgattt tttagactga tttttttgat ctttctcaag
    40501 agctgttttt tcttttagtt gctgctcttt tttcttattg gttttagccg aatcttcttt
    40561 tttatcctct tttttgctct tttctttcaa ttttgtctta tctgattgcg tattcttctc
    40621 ttgtttctca gaagcaggct ttttagttaa atcagcttta gcagtttttt cctctttctt
    40681 attttgctta tcttctttgt ccgatttttt actgaccgaa gaactagcaa ctgcattttt
    40741 tgcccgataa gcgactaatc cattataaat ggcccgagca acttgtttac gataatttgc
    40801 actggctagc tttgcttcct cggttgaatt agataaaaat cccgtttcca ccaatacaga
    40861 tggaatatca ggtgaacgca gaacacttaa gcttgcgtgc tgaggagacg attttgctaa
    40921 tgcagccaca tttgacattt tagctaaaat gctcttgcct aattcatagc cggcacgttg
    40981 agagtgagag aactgtaaat caagcactgt ttgatttaaa taacgttcat tgttgcttga
    41041 aagcaccgaa ccagccccgc caagtaattc cgactgcttc tcgtggtctt ccaaccattt
    41101 acccatttca tcgctagcac ggctattaga aagtacccaa accgaagccc ctttcaagga
    41161 atcgccacga ggcgaagagt ctgcgtgaat agaaaccagc agatcggcac gatgcttacg
    41221 ggcaatctcg gtacgttgcg gtaattggat aaaataatct cccgagcgtg tcatcactgc
    41281 tttaaaatta ggatcggcat ctaacaaggc ttttagctct ttagaaattg cgagggtaac
    41341 gcttttttcc aaaatcccca gatttttacc aatagccccc ggatcttttc ccccgtgtcc
    41401 ggcatcaatc gccacaatgg ttttggcaaa tgtggaaaaa ctgaataaac tcaatgtgct
    41461 aaaaacaata aatctgataa cttgcttcat tacctcccct acaagcggtc tatttttgat
    41521 gaaaatttac taatatatct actgcagttt gattttgcgg caacaggcta atctgccgtc
    41581 cgtcattctt ataatcaatt tggatcacaa aatcagcctc tggaatcatt cctttacctt
    41641 taactgccca ttcaagcaaa caaagcgttt gtggtttgaa ataatcacga attcccataa
    41701 actccagctc ttcaggatcg gctaagcgat acaaatcaaa atggtaaagg ctgaaaggcg
    41761 gaagttggta ttcttccacc agagtataag ttgggctttt tacattgcct tgatgcccga
    41821 aagcccgtac gatcgagcgg gttaaggtgg ttttacctgc cccaagttcg ccgtttaggt
    41881 aaacaaccag cgaatgagct tggtcttgca ataaatattt cttaagttct aacgcgaatg
    41941 attgaccaaa ttccagcaat ttagtttcat cttcgcagta aaaagagaga gaatctgtca
    42001 ttatttttgg tctagctgaa taaaatgttc ccgataaaat ttcaattcgt taatggattc
    42061 acgaatatcg tccaacgcta aatgcgtatt gcctttactg aatttatcta aaatctccgg
    42121 tttccaacgg cgtgccagct cttttaaagt actcacatct aagtggcgat aatggaaata
    42181 atcggctaaa tcaggcatat atttatacaa aaaacgttta tcttgagcaa tgctgttgcc
    42241 gcaaatcgga gaagcgcctt ttggcaccca gcgttttaag aagtctaaag tttgcaactc
    42301 tgctgcccgt tcagtcaatt tgctcgcttt cactcgttca atcagcccgt tagcggtatg
    42361 ggttttgacg caccaatcac tcattttctc taataaatca tcggtttggt gtaccgcaag
    42421 taccggtcct tccgctaaaa tatttaaatc cttatcggtc acaatggtgg cgatttcaat
    42481 aatgcgttct ttttccggat ctaaccctgt catttcaaga tcgatccaaa ttaaattttg
    42541 ttcgttttga gccattttat ttccttacac ttttgcaatt tttagggcat ttttgaccgc
    42601 ttgcggcaca aattggctga tgtcaccatt gtggcgatag atttccctta ccatcgttga
    42661 agaaaggtaa cgccattcta ttgaaggggg aaaaaaaata gtttctaaat cgcccgataa
    42721 tttgtaattt aactgagcga gttggatttc atagtcaata tcatctgccc cacgaatacc
    42781 acggattaac gctttggcat tctgctgttt ggcaaagtct gctaacaatc cactaaagcc
    42841 aatcacctca atattttgcc actgggtaca gctttgttta acaagctcca ctcgttcttc
    42901 aagactaaaa agcggctgct tgcttgggtt ttgagcaacg gcaacaatca cttttccaaa
    42961 taagtgagag gctttgcaaa ttatgtccaa atgcccattg gtaatgggat caaaggtgcc
    43021 tgcataaatt acgttataac tcattttatt tctctaaata ggaggctaat aaatccaaat
    43081 ggcgttttaa tgccccttga ttttcctgta acacgcttaa gccggatttt gcaatttctt
    43141 gtccgatttg gggctgctta agcaataatt gaatgctctc ggtcaaagcc tcgactgaac
    43201 tttcaatttc aatcacgcct ttcacctcac gcaatttctc aaagatttca gggaaattat
    43261 aggtgtaaag cccagaaacc accggaatat taaaagcgat tggttcaagt ggattatgcc
    43321 caccgtgttt gaccaaactg cctcctacaa aagcaatgtc agacaaccca tacagtaaca
    43381 tcatttcccc cattgtatca cctaacatta cttgagtatt ttggcttaac gttttattct
    43441 cagtacgttt tacataattt aaatctgatt tttgaatcag tagctcaact aaaccaaaac
    43501 gctccggatg gcgaggcact aaaatcaaca ctaaattcgg gtaatgctct aataagagtt
    43561 tatgagcatc taaaatcagc ttctcttccc cttcgtgagt actgccggca atccaaatcg
    43621 gtctctctgt taaattcaga ctagctttag ttttaatcac cgattgatga agctgtggcg
    43681 taatttctaa atcaaatttc aggttaccgg tattaaccat ttttgccggt gcataaccga
    43741 gtgctaaata gcgatctcgg cttacctcat cttgagccat aatcagacta atttggttga
    43801 gcatatcctt aatgctacct tttacccagc cataacgctt cgcagaacgt ggcgataagc
    43861 gggcattggc aatcacaaat ggaattttac gaatatttac tttacgaatt aaattcggcc
    43921 aaagttcggt ttcaattaca atcatcaatt tcggatcgat aaaattcaaa aaccgctcga
    43981 tagcatcagg taagtcataa ggcaaataaa aatgtgaaac actattacca aaagcagctt
    44041 gcacacgccc agagcctgtt ggcgttaccg ttgtgactat caacggaagt tcaggatatt
    44101 gcttgctgac tgccttaatc aaaagcgttg cagcaatcac ctcaccaacc gatgccgcat
    44161 ggattaccac cccttttgct ttcggttttt ccgattcgtc ataaatccca taacgctccc
    44221 ataaacgttt ccgataagcc ggttgtttac gccctttgta ccacattaat agcagaacca
    44281 caggctgtaa tagataactt aaacaaatat agagtaaacg tagcatttat tttccttata
    44341 ccataaccct cacctcttgt gggagagagt caaatacgcc aataaatcgt tcctctcttg
    44401 ttcgagaggg gggaacaagc ggttattttt accaaaaatt ttgcaatcta tatcctcaaa
    44461 gacaaaacca cggaataacc ttaatccgtg gtttatctcg catcattacg cttgatgtgg
    44521 attgcgggta ttcgtattca ctaagttacg cattaaaagt gcaaaatcca actcaatatc
    44581 tgccggcaca tctaaaaaga caaaatgccc gtcaccgagt gctgcgtcca cattttcatt
    44641 tttgcggtta agcatacgct cgattttaaa tacaatgttg cctttagggg tcatcatttc
    44701 cactgaatcg cccactaaga atttgttttt cactgccact tccgccaagc cttctgcatt
    44761 gcgtttgccg gtaaattcgc ccacaaattg ttggcgttct gaaatcgaat agccatattc
    44821 atagttttgg tattcatcgt gagtatgacg acgtaagaag ccctctgtat aaccacggtg
    44881 tgcaaggctt tcaagagtat ccattaaact ttcgtcaaac ggtttaccgg cagcggcatc
    44941 atcaatcgcc ttacgataca cctgagccgt tctcgcacag taatagaacg atttcgtacg
    45001 cccctcaatt ttcagtgaat gcacccccat ttgagttaaa cgctcaacgt gttgtactgc
    45061 acgcagatct ttagagttca taaaataggt gccgtgttca tcttcaaagg cggtcatttg
    45121 ctcatcaggg cgttgtgatt ctgtataaag gaacacttta tctgttgctt cgccattacc
    45181 tagagtagga gccacatttt tgacttcaat ttccggctca tacttaggca caatttgccc
    45241 tacctcatca atcttacctt cttccatttt atattcccaa cggcaagcat tggtgcaagt
    45301 gccttggttt gggtcacgct tattgatata gcctgaaagc aagcagcgac ctgaatatgc
    45361 catacacaaa gcaccgtgaa cgaagatctc aagctccata tccggcactt gttcacgaat
    45421 ttcttcgatc tcttcgagtg ataattcacg ggataaaatc acacgggtta gccccatttg
    45481 acgccagaat ttcaccgttg cccagtttac cgcattggct tgcaccgaaa gatgaatatc
    45541 catttcaggg aaattttcac gcaccaacat aattaagccc ggatcagaca taatcaaagc
    45601 gtccggcttc atatccacta ccacttttag atctttgatg aaggttttta attttgagtt
    45661 gtgtggcgca atgtttacca ccacatagaa tttttttcct aaggcgtggg cttcatcaat
    45721 cgcaactttt aaattggcgt ggttaaattc attattacgc acacgcaagc tataacgggg
    45781 ctgtcctgca taaatcgcat cggcaccata agcaaaagcg taacgcatat tttttaaaga
    45841 acctgcaggc gaaagtagct caggtttggc atattttaaa gtcatattat tctcttttct
    45901 gataacaagt caggacttct cgacgtgaga agcgtaagcg gtatattttc taagaaatat
    45961 tgcgtgatgg caagctaatc cattacaatc cgatttttat gtggggaaca atatgaaact
    46021 taaatacctt ttagcaacaa cattactggc tttttcaaca tttaccgccg ctcaaagcat
    46081 caagacggag atgatgcaaa tgaatatgca agcgaataaa ttgatgcgtg ccgaatcggc
    46141 agaagagttt agcgaaattg cgaatgattt cattataatt accgagaaaa ccaaagggat
    46201 ttttcccaat agcgtagaag gcgataaagc agctcaggaa gattaccaag ccggtatgca
    46261 aaaattaatt gatatggtta atcaagccag tgagaaagct caagcaggtg aattgcaaga
    46321 agcaaaaatg ctgatttccg agcttgaaat gatcaagcgt gaatatcaca aaaaatacaa
    46381 ataattcaac acattaaaag ggtgagctaa agctcaccct ttctattcaa attccagttc
    46441 aaccgaattc tcaccaagaa gtgcctttaa ttcgctaaac attgcctcat tcgggctgat
    46501 tcgccactct actccgcctt tgagcaatac cctaccttcc gggctttggt aataaaaatg
    46561 cagcggtaaa gtgccttctt tatgtggggt gatgatagcg gtcatttttt taataaaatc
    46621 tgcagaaagt tgctctttgc taatcgctaa cgctaaactt ttggcaaatc gaccccttgc
    46681 ttcatcaagg gataacactt ctcgagccga cattttcagt ccaccgctga aatcatcaaa
    46741 ctgtaccgaa cctgttgcca caataatttg gtcttgttgc atcaaatgcc cgaaattttc
    46801 taaggcttcc gagaaaaggg taatgtccaa tttccccgag cgatcttcaa tagtcgcaat
    46861 cccaatacgg cttcctcgct tggtaactgc cactcgagat gccataacaa ttcctgaaac
    46921 cgtggtcatt tgccctcgga aagtcggttg caattcattc agccgattag gggcatagtg
    46981 ggataattct ttgaggaatc taccaatcgg gtgtccgctt aaatacagcc cgagcgtggc
    47041 acgctctcca tctaaaatca cttgctccga ccattttggc gtattggcgt aagcattttg
    47101 cacttcttcc ggtgtctcgg taagcacgcc aaacatatcg ctctgcccga gttcctccat
    47161 tttagcgtgc tgatctgagg ctttaagtgc atcttccaaa ttcttcatca aggcagctcg
    47221 gtgagggcct aatttgtcaa aagcaccgga cataatcagg ctttcaaagg tgcggcggtt
    47281 gatttttttc agatcgaccc gagcggttaa atcaaataga tctttaaatt tcccctcttt
    47341 ttggcgagct gccagaattg cctcaatcgg tccttcccca acgcctttaa ttgctcctag
    47401 cccgtaaaca atttcgcctt tttcatttac gctaaaacga tgtttaccgc tgtttacatc
    47461 aggcggcaca acggttaagc ccatattcat acactcatcg tagaacccga caattttatc
    47521 ggtattatcc atctctgagg tcattaccgc agccataaat tctgccggat aatgggcttt
    47581 tagccaaagt gtttggtaag aaaccaacgc ataagctgct gagtgagatt tattaaagcc
    47641 gtagccggca aacttttcta ccaagtcaaa aatttgaccg gcaagtttac cgtcaatccc
    47701 tttggcttcc gccccttttt caaacacttc acgctgtgca gccatttcct ccggtttctt
    47761 cttacccatt gcacggcgga gtaagtccgc tccaccgagt gtataaccgg caagctcttg
    47821 tgcaatttgc ataacctgtt cttggtaaac aatgacccca taagtcggct cgagaatagg
    47881 ttttaagcat tcgtgttggt attgcggatc aggataagaa acctcttctt tgccgtgttt
    47941 acggtcaata aagttctgca ccatacctga ttccagcggc cctgggcgga atagtgccac
    48001 caatgcgata atatcttcaa aacagtccgg cttcaggcga gaaattaagt ctttcattcc
    48061 ccgtgattca agctggaata ctgctgtagt tttagctgcc agcaacagag caaaggattt
    48121 tttatcatca agcggaatgg tttcaatccg aatcggctct ttgccttcac gagccaaacg
    48181 ttcgttaatc atctccaacg cccatttgat gatggtgagc gtacgcaagc ctaagaagtc
    48241 aaacttcacc aatcctgcat attccacgtc atttttatca aaatgggtaa ccgggtgtaa
    48301 gccctcgcta tcgcaataaa gcggcgaaaa atcggtaatc gcagttgggg cgatcaccac
    48361 accaccagcg tgtttacctg cattacgagt tacaccttcg agcttacgag ccatatcaat
    48421 aaggtctttc acctcttcat cggcttcata tagctcaggc aattttggct cagcggcaaa
    48481 ggctttttca agcgtcattc ctggatcggg cggaatgagt ttggagatgc gatccacaaa
    48541 gctatagggg tgtccaagca ctcgccctac atctcgaatg accgctttcg ccgccatagt
    48601 accgaatgtg ataatttgcg ataccgcttg tcgcccgtag gtttccgcaa cgtgttcaat
    48661 cacacggtct cgcccgtcca tacagaaatc aacgtcaaaa tcgggcattg aaacacgctc
    48721 agggttgaga aaacgctcaa aaagcaaatc aaattccaat gggtcaagat cggtaatctt
    48781 caacgcataa gccaccaatg agcctgcccc tgagccacga cccggtccta ccggaatatc
    48841 attatctttg gaccattgga taaactccat cacgatcaaa aagtaacccg ggaaccccat
    48901 ttggttgatc acatctaatt caacttgcaa tctttcgtca taaaccgacc gcttgttcgc
    48961 cctttcctca ggatcaggga atagaaactc taaacgctct tctaagcctt ctttcgattt
    49021 ttttaccaag aaatcttcgg tggaaagctc accggtcggg aaatttggca ggaaatactc
    49081 gcccaaacgc acggtaaccg aacagcgttt cgcaatttca accgtgtttg ccaatgcact
    49141 cggtaaatcg gcaaacagct tgcacatttc ctcttcagta cggaaatatt gtttcggtga
    49201 gtattttttc gggcgtttcg ggtcgtctag ggtgtagctg tcgtgaatgg caacccgaat
    49261 ttcgtgtgcg tcaaagtcat cttctttcaa gaagacaaca tcatttaccg ccactaacgg
    49321 aattgcattt ttttgtgaaa attcgaccgc ttgtttgata tagcgttctt cgtctgcccg
    49381 tccggtacgg caaacggaaa ggtaaaaatg attcgggtaa tattgctgat aaaaagctaa
    49441 tttttcttca gcttcttgtc ggttttcttt gagtaaggct ttacccacat cgcccattcg
    49501 cccgccggaa agaatgatga tgccctcatt cagctctgct aaccattcac gttccaccat
    49561 cggaaattcc acatagcctt gctgataggc tttggacaaa atttgggtaa tattatggta
    49621 gcctttgttg ttcttcgcca gtaatgtcag ctcaaaataa tcttcattgc cgctctcggt
    49681 tctaacataa acatctgccc cgataatcgg cttaatccct gctcccaatg cttcgccata
    49741 gaatttcacc aacccgcaaa agtttataaa atccgttaag cccattgcca ccatattatt
    49801 agcggcagcg gttttaacta aggattttac cttagctaaa ccattaatca ttgagaaatc
    49861 actgtgaact tttaaatgaa cgaaacgaca atctgacata ggaatataat ctaagtaaag
    49921 aagtttcccc tctttagtaa agactgtcag gttctaaaaa gtgaagcctt ctgtgaataa
    49981 tcccgttggg cgaatgttat tcgcccctac aaacgagcat tattcttgct cagagttaca
    50041 tttaaaatcc gaatgtaggg gcgaattaca ttcgcccttt cagaacctaa caaccctgct
    50101 ttatctaaag aagggagtta aaattaatca cgttttttgc ttaacagcca ccaaacgatg
    50161 atcaaacaga gtaggcttgg aattaatgct ccaaccggta taggtaacca agtggcaatt
    50221 aagcttaaat tgccaaacac aatatttgcc acatagaaca taaagccggc aacaatacca
    50281 atcacaattt tcgcccccat cgtactacta cgaagcggcc cgaaaataaa ggagatcgca
    50341 agtagcatca tcaccgccat tgagattggt tggaatactt ttcgccagaa ggtgatctca
    50401 aaacgtttcg gatcttgtcc ggtatctttt aagaagccga cataatctgc caagcctgaa
    50461 atcgagagcg actccggttt gagtgaaaca atgcctaatt tgctaggggt taaactggtt
    50521 tgccaaactt gatctggctg tttagcttgc tggatctgat tttctcccac agtcgatttt
    50581 tccactttag atagcaccca gcctttttca tcactgtaat tcgcagttcg ggcttttaaa
    50641 acagattgca attcacgttt gttttgtcct tcgccgaatt gataaatcag tacgttatct
    50701 aagctttttt catttttaat atgattaata tagataaatg aattgccatc tttcgcccaa
    50761 aacccgtctt ttgtggcaag cattgagccg ccactttggg caatcgaacg catattacgg
    50821 gcaaactgct cggtttgtgg cacgccccat tcgccgataa tcatcgtaaa aatgactaac
    50881 ggtaaggcag ttttcatcac ggctaaacca atgcggaaac gggaaaaacc ggaggcttgc
    50941 atcaccacca attcactaag gctcgctagg ttgcctaaac cgagtaatga gccaagtaat
    51001 gccgcaatcg ggaaaaaggt ttcgatatct cgtggaatag ttaaaaaagt atagtatgcc
    51061 gcttttaagc catcgtaaga tccacgtcct acatcacgaa actcttccac aaatttaata
    51121 atcgccccaa gcccaatcaa cataaacagg gttaaaaaaa tcgcggataa aatcgttttg
    51181 ccgatgtagc gttctaaaat attcattgag aaaaattgca ttatgccacc gccttattgg
    51241 ttaatttttt tgcaccaaat tgatagcgta acttagacat aaatttacta tcccacgcat
    51301 ttaaaataac acctaaaact aaaaaggcaa ctgataccaa cggcattaac acttccgcat
    51361 tcaacttgcc tgatgcccct gacgatttta gcgagctttg tagtaagaaa tagattaaat
    51421 aaagcaataa cgccggcagt agtttagcaa aacgcccttg acgagggttt acactactca
    51481 ttggcaccgc taataatgcc attaacggta cagctaaaat caaagcaagc cgccaatgaa
    51541 gctcggcttt tgcttccggc gttttggttt ccattaattt cttgaaatcg gctcgttgca
    51601 ctaatttctc atcagattca acgtcttgat agcctaaata agcagaataa ttctcaaaat
    51661 gtgaaatacg gaaatcggca ctttgtggtg taccttcaaa acgcttgctc tctgccaagg
    51721 ttaagacttg atccccattt ggcaaacctt gcaacgtgcc ggattcagca acaaccactg
    51781 aaggtttgtt tttcttctgc tgttccggct ggaaaacgta gatatcattt agactgttat
    51841 tttcaatttt atcaataaat aacacatagc caccggcaga cataaattgt ccggccgaaa
    51901 gagccgcaaa acgtgggttg gctttcgctt ccgctaacat ttcactctgt ttattaattg
    51961 cccaaggcgt aagccaaaac acgttataaa ccgctaatgc agtggtaaaa atcgagagaa
    52021 acatcgccac tttaaccaat agcccttgcc cgataccaca agcccgcatt acggtaattt
    52081 cactttcggc ataaaaccgc ccgagggtta ataacaaggc gataaacagt gagagtggca
    52141 gcattaattg tgccattgtc ggcataccta agcctaataa gctcaccact aaatctgccg
    52201 gtactttacc actcacagca gaacttagaa cacgcactaa ttgctgacaa aaaaagatca
    52261 gtaataagat aaacaatatc gccaattggc ttttaaatat ctctttggtt aaatatcggc
    52321 ttaagatcac gttttttctc tataacattt acaaatctga ataccgctaa acacaagcgg
    52381 tctatttttg ttaatttttt gcaaagagcg caaaataact tattcgaatc gctaataata
    52441 cctttttcat acaaaaaaat cacctataga aaatatcacg cacggcaaaa ccgtgcgtaa
    52501 gtattattgt tttttcgatt ttttcgatga tgttgcttta tgagcttcaa gaattaattt
    52561 cttaccttgg ctatcttcaa tttcaatctt aggtggtgct tccgtatttt gatgaaggat
    52621 agctataata ttttcacctt gtgcaatatc ttcaaagttt cctttcacac gtaacttagc
    52681 cgcatcaaca ctagtgtcaa atactaagaa tgtacctaat gcggtaactc taatattttt
    52741 aagccctata ttgtccttcg ttaccgtttt atattgaggt gcttttttcc cttttgcagc
    52801 cataatcttc tcttgattag tcgcaatatt aagaatattt tgaactttag tcgcttctgc
    52861 tgtagattgt gcctgttctg ttaaatttgg ttctccatca aaaataacat ccccaacaaa
    52921 ttgcacctct ttaggctcat tttgcaataa tggtgcaacg tctttagctg aaacaaccaa
    52981 aaataaccgt tcacctattt tttcaaaacg gacatcaata ttggttaatt gtgattcaat
    53041 ttgttcatta attgtcttga tcgcagtttc tgtctcattt tgaagcgata ttttacgtgt
    53101 aatatcaaca tcataagcaa taaaaccaac ttttaaacgt tgtgataact gctgaagtaa
    53161 attgcccaca tttccatcat aagaaagacg taactttgcc tgctcatagc gactaatttg
    53221 agcatcatca ttagcgaaaa tagtgttttg agtccctaag
//
LOCUS       DANMBQ010000004        49795 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.004, whole genome shotgun sequence.
ACCESSION   DANMBQ010000004 DANMBQ010000000
VERSION     DANMBQ010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 49795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 49795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..49795
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.004"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            128..1096
                     /gene="mdh"
                     /locus_tag="PXE92_000195"
     CDS             128..1096
                     /gene="mdh"
                     /locus_tag="PXE92_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDL5759489.1"
                     /translation="MCQSKKVALLGAAGGIGQSLALLLKLNLPAKSELSLYDISPVTP
                     GIAVDLSHIPTDVKVTGFAGEDPTEALKDADVVVISAGVARKPGMTRADLFNTNATIV
                     HNLVEKAAKVCPKACIAIITNPVNTIIPIAAEVLKKAGVYDKNKLFGVTTLDVIRANT
                     FVAEAKDVNVKYVRVPVIGGHSGTTILPLLSQATVNGLKLEFTQEQIEQLTHRIQNAG
                     TEVVEAKAGGGSATLSMAQAGAEFALGLVRALIGEDVIRYAYVDNANGETSPAFFAYP
                     IRLGTNGVEKVLPIGNLSEFEKDQLEQLIPVLNDEIQLGQTFNKNA"
     gene            1173..1469
                     /locus_tag="PXE92_000196"
     CDS             1173..1469
                     /locus_tag="PXE92_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759490.1"
                     /translation="MKKHHIIILTLASASVVACSSNTPVQVVNGDKNIDYSQPKTIYI
                     SETNTQPPALTKQEKIKPSNATALCFNGSYSTDIQNPCKKDGGVKQYFAHHHAN"
     gene            complement(1517..1693)
                     /locus_tag="PXE92_000197"
     CDS             complement(1517..1693)
                     /locus_tag="PXE92_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5363 domain-containing protein"
                     /protein_id="HDL5759491.1"
                     /translation="MMSEQTEKKGWFKKALEKYDAFCDELGVNQGACRGCVPVVKFDP
                     EPEKEQPEKSENKT"
     gene            complement(1778..2269)
                     /locus_tag="PXE92_000198"
     CDS             complement(1778..2269)
                     /locus_tag="PXE92_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HDL5759492.1"
                     /translation="MPSFDIVSEITMHEVRNAVENANRVLSTRYDFRGVEAVIELNEK
                     NESIKLTTESDFQLEQLIEILIGSCVKRGIEHSSLDIPTESEHHGKLYSKEIKLKQGI
                     ESDMAKKITKLIKDSKIKVQAQIQGEQVRVTGKSRDDLQAAIQLVKGADLGQPFQFNN
                     FRD"
     gene            complement(2285..3148)
                     /gene="serB"
                     /locus_tag="PXE92_000199"
     CDS             complement(2285..3148)
                     /gene="serB"
                     /locus_tag="PXE92_000199"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HDL5759493.1"
                     /translation="MTNTIFIYSKTLNEREIEQFSQQTAAILLKQAVYLDYKIAFFST
                     NLTACELRETAQKINADISDLTIIPTLNQGGLLLMDMDSTAIKIECIDDIAKLAGTGE
                     VVSAITASAMRGELDFEQSLRKRVGTLENASESILQKVRENLPLMDGFEQMVAILKEH
                     GWKLAIASGGFDYFADYLKQKYGLNFAVSNQLEIIDGKLTGKVLGKVVDAQHKADTLQ
                     NLATTFNIPPNQWVAVGDGANDLPMLKTASLGVALHAKPKVQAQADFVVNFGDLTALC
                     LLLNANHLFQH"
     gene            3234..3893
                     /locus_tag="PXE92_000200"
     CDS             3234..3893
                     /locus_tag="PXE92_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtjB family periplasmic protein"
                     /protein_id="HDL5759494.1"
                     /translation="MYISREKITKTLLLAGITLLCCGIVAVILMGVNQFKLGSQLASI
                     NQVSNLSHLLVRQQANIFSFLLVKNAKTDELVDALDSFAKEDFIIDANIYSPNGVLLA
                     QSQNAKDLKVLLDSEQSAKTQQIVEPIFSQQALVGFLRVTFDAEYGQTTKARVEQQFH
                     QLYGEIIILLLTGILLASSINYYFRRKIHHVQISPKPLMSQVKTQTQRFHSRRRWIKR
                     K"
     gene            4003..4221
                     /gene="infA"
                     /locus_tag="PXE92_000201"
     CDS             4003..4221
                     /gene="infA"
                     /locus_tag="PXE92_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDL5759495.1"
                     /translation="MAKEDCIEMQGTILETLPNTMFRVELENGHIVTAHISGKMRKNY
                     IRILTGDKVTVEMTPYDLSKARIIFRAR"
     gene            complement(4292..5485)
                     /locus_tag="PXE92_000202"
     CDS             complement(4292..5485)
                     /locus_tag="PXE92_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL5759496.1"
                     /translation="MQNIDVVVIGAGAAGLFCAAQLGQAGKKVVVLDSGKKVGRKILM
                     SGGGFCNFTNLDVSAGNYLSQNRHFVKSALSRYTQWDFISLVSHYGISYHEKELGQLF
                     CDESSQQIVDLLQAECNKGKVEILLRQAVISVEKVANFFEISTACGKFQSEHLVIATG
                     GLSMPALGASPFGYQLAEQFGIPVVPPRASLVPFTWKESDKYFAELSGIALPITVSAN
                     GKSFSNQMLFTHRGLSGPAILQISNYWELGETVEIDLLPSQSITDILSELRQSSPKLQ
                     LKTVLSRYLPKKLVEVWLEQKLLTDKVIADLSKKDLTLLEQFIHHWHFLPNGTEGYRT
                     AEVTKGGVDTDYISSKTMEAKNTAGLYFIGEVLDVTGWLGGYNFQWAWSSAFACAEGI
                     IEKSK"
     gene            complement(5485..5853)
                     /locus_tag="PXE92_000203"
     CDS             complement(5485..5853)
                     /locus_tag="PXE92_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/DsrF/TusD sulfur relay family protein"
                     /protein_id="HDL5759497.1"
                     /translation="MSNSVQKLLFIINSAPYGNETFFSALRLALQIQEQHKANTEIKL
                     FLMSDAVTAGLAKQNPAEGYHIQQMLEILTAQGANVKLCKTCTNARGITDLPLADGVE
                     IGTLIELADWTIQADKVLNF"
     gene            complement(5973..7268)
                     /locus_tag="PXE92_000204"
     CDS             complement(5973..7268)
                     /locus_tag="PXE92_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL5759498.1"
                     /translation="MLEKLFQLKAKGSNVKTEIIAGITTFFTMVYIVFVNPSILGVAG
                     MDTQVVFVTTCLIAAFGTIAMGLFSNLPIALAPAMGLNAFFAFVVVQKLGYSWQVGMG
                     AIFLGSVGLFLLTVLQVRYWFMSAIPLGLRVGIGAGIGLFIALIGFKNMGLVVPNPAT
                     LVALGDLHDPKVLMGILGFFIIVVLAAKGIHSGVLISIVIVTALALAFDPAVSFNGIM
                     SMPPSLGAVVGQVDIAGAFDVALLGMIFSFMLVNLFDSSGTLIAVTTKAGFADEQGRF
                     PKMKQALLVDSTAAMAGSYMGTSAISTYIESGSGVSVGGRTGLTAVVVGILFLLTIFF
                     SPLAGLVPAYATAGALVFVGILMASSLIEVKWDDLTEATPAFITTAMMPFTYSITEGI
                     AFGFISYCVMKAFTGRWKEINLSVLVVSLLFIAKFVWVG"
     gene            complement(7365..8351)
                     /locus_tag="PXE92_000205"
     CDS             complement(7365..8351)
                     /locus_tag="PXE92_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL5759499.1"
                     /translation="MSNIHLAIAADFTLAEKLLEALANQDLGIENISAVELEPFGEEQ
                     NLRFGAKAVAQYALDEVNWAEFSHVLFAGKMAQAEVLAEAVKAGCVILDLYGITALIG
                     DVPVVVPSVNDENVANLRERNIVALANPQISQLALALKPLLNEPLKQVWVTSLLPSAY
                     FGDEKVKELAGQTARLLNGIPFDENAERIAFDVVPANVQGEEKSLPFSKAFELQIAKV
                     LPNLTACTTFHSVQVPVFYGVSQMVSVQSEYQLDANALSEAWKAENWLNFNENSVITA
                     VKNGENEEQNALEISQLLAKSEQEVQFWTVADEQRFSLAFLAVKLLKLVLAY"
     gene            8592..8867
                     /gene="ybfE"
                     /locus_tag="PXE92_000206"
     CDS             8592..8867
                     /gene="ybfE"
                     /locus_tag="PXE92_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HDL5759500.1"
                     /translation="MAKQDSDCITLDLFATVPKVGRPRTNPLDREQQLRINKRNQLKR
                     DKSSGLKRVELKLHSNLVKLLEEQASEQGVSRGQLIETILNNYLTNR"
     gene            8873..9397
                     /gene="fldA"
                     /locus_tag="PXE92_000207"
     CDS             8873..9397
                     /gene="fldA"
                     /locus_tag="PXE92_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HDL5759501.1"
                     /translation="MAVVGLFYGSDTGNTENISKMIQKKLGAELIDIRDIAKSTKEDI
                     EAYDFLMFGIPTWYYGESQADWDDFMPTLKEIDFNGKVVAIFGCGDQEDYAEYFCDAM
                     GTVRDVVEPNGGVIVGHWPTAGYTFEVSQALVDDDTFVGLCIDEDRQPELTTERVNKW
                     CEQLKEEMCLDQLA"
     gene            9433..9873
                     /gene="fur"
                     /locus_tag="PXE92_000208"
     CDS             9433..9873
                     /gene="fur"
                     /locus_tag="PXE92_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HDL5759502.1"
                     /translation="MSEANIKRLKEVGLKVTEPRLTILALMQDIRDEMQHFAAEDIYK
                     ILLEKGSDIGLATVYRVLNQFEEAGILTRHNFDANKAVFELNMNHEHDHIICMDCGKV
                     FEFKDPDMERRQREISEKHGMELTNHSLYLYGKCSNLTNCDEKK"
     gene            9956..12622
                     /locus_tag="PXE92_000209"
     CDS             9956..12622
                     /locus_tag="PXE92_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HDL5759503.1"
                     /translation="MTMEENTHTVVDAQIRQPRKISPFWLLPIVAFIIGALLFFQILK
                     EQGETITIRFSKGDGITAGKTAIRYQGLQIGQVKRVYFVDNLKEVEVQAEINPEAKSI
                     LRKQTKFWLVQPSASLAGVSGLDAIVSGNYITLLPGEGDFVDEFIAEEDPPAITVSDG
                     DLLIRLISDDIGSITVGASVYFRKVPVGNIADYRFTKDQKKIEIDVVINQKYAHLVKK
                     ESRFWNISGISADVNLQGIKINMDSLASVVQGAVAFDSPDNMEIAEQGQKFELYPDLK
                     SAKRGIEINVKLPLTHNLKINETGVFHQNVQIGMLSQLKLPQVKDNGVPQQESGQHKQ
                     IDGVLLIDPSYENLLRSQTKILLKEPKFSLNTEQLTKVGELLRGVYFEVHPGEGEPQS
                     EFVVQNEADYLLSLPNLLSFSLIAPQAYGVDTNQGIYYSDVQIGEIVKRSLELDKVRF
                     DVIIYPPYRNLIGSNSKFVAISNIDMSVGLDGLRVHAGSPSEWLKGGVRLINGKNDGS
                     PKKQYALYKDIESAESGMATLDKKATTTLSADSLSGISEGSLVLYRDFQVGEVLKITP
                     KQQKFEVELFIQPNYRHLLTEKSRFWIEPATSVDVSLKGVNITTAPLMRTLKGAISFD
                     DGGSKGNKTLYASKEKATSGNTYLTLIAKDASKLSEGMDIKYMGLTVGQIEKLELQNA
                     KKQIKATAYIQRKYYPLIAKAGSKFNVISPEISTSGFKNLDAALQNYITVDVGSGQAQ
                     NQFVLADTDTVKTTYANGFPIIVETTNANGIQPEAPVLYRGMQVGIVSRLGLSELGDR
                     VLIYVNIQDKYKHLVRTNTQFWQASGYTMDVSLQGVSMNSGTMSQLLNGGIEFSTPYT
                     KVVKPQAQPNRRFFLQRKLPDEAPAWDQGIAE"
     gene            12640..13149
                     /gene="luxS"
                     /locus_tag="PXE92_000210"
     CDS             12640..13149
                     /gene="luxS"
                     /locus_tag="PXE92_000210"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDL5759504.1"
                     /translation="MPLLDSFKVDHTKMNAPAVRVAKTMTTPKGDTITVFDLRFCRPN
                     IDILPVRGIHTMEHLFAGFMRDHLNSEQVEIIDISPMGCRTGFYMSLIGSPSAEEVVK
                     AWTASMEDALHKIPDVSAIPELNEYQCGSYKEHSLKEAHQIARNVLAAGIGINRNEDL
                     ALDEKLLNP"
     gene            13218..15065
                     /locus_tag="PXE92_000211"
     CDS             13218..15065
                     /locus_tag="PXE92_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5759505.1"
                     /translation="MFEKLFKWFEARVETYPNEMPKTPKSGLIPFIYDATKGMRFYIL
                     LLTVLVAAVGIIEAVLFRFMGDLVDWVNKYSPTELWAEKGWTIIGMFFIALLAVVFVY
                     LASSIRFQSLQGVFPMRLRWNFHRLMLGQSLGFYQDEFAGRVSAKVMQTALSVRDVIM
                     TCADMLVYVLVYFTTSSVILLQLDGWLFVPFILWVISLAATIIYFVPKLAQAAQEQSD
                     ARSLMTGRITDAYANIATVKLFSHGNRESAYAKESMEGFMVTVHKQMRLVTVIETVTN
                     LTSMALIISTAGIGLWLWGSSVVTAGAIATSTALALRIKGLSQWIMWEFARLFENLGT
                     VQDGMITLSKPHNVVDKIDAKPLNVTKGEIKFENVDFAYDPKKPLLKDFDLTIKPGEK
                     VGLVGRSGAGKSTLTNLLLRFYDIQDGSITIDGQNIRDITQESLRSQIGLVTQDTSLL
                     HRSVRENLMYGRPNATEEEMIKAVEQAAASEFIPNLQDAKGRTGFDAHVGERGVKLSG
                     GQRQRIAIARVMLKDAPILLLDEATSALDSEVEVAIQENLTQLMEGKTVVAIAHRLST
                     IMAMDRLIVLDKGEIVEQGTHEELLAQNGVYARLWAHQSGGFLPENTDI"
     gene            15252..16601
                     /gene="dnaA"
                     /locus_tag="PXE92_000212"
     CDS             15252..16601
                     /gene="dnaA"
                     /locus_tag="PXE92_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDL5759506.1"
                     /translation="MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQASSENGELTLY
                     AQNQFVENWVKDKFLSEITELARFLAKNDNLVVTLKVGIKPTEQPKVSPNLKNESSEF
                     SNTGFKTGLNPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESHCNPLSFYAGTGLGKTH
                     LLHAIGNELVKRTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDD
                     IQFLANKPKVQEEFLHLLNALFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATI
                     EPPELETRVAILRQKALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTLR
                     PITVDAVRETLQDLFASFDYLITIENIQRIVAEYYGIKVADIKSKSRARSIARPRQMA
                     MALAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTESGIQEDYIHLTRKLSS"
     gene            16620..17723
                     /gene="dnaN"
                     /locus_tag="PXE92_000213"
     CDS             16620..17723
                     /gene="dnaN"
                     /locus_tag="PXE92_000213"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDL5759507.1"
                     /translation="MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSL
                     TGTDLEVELTTQAQLLQAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEEDKAIIKA
                     GRSKFSLATLPASDYPNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMK
                     FETEGNLLRTVATDGHRLAVCTMVLNQELLTHSVIVPRKAVLELSRLVASNDETVRLE
                     IGSSNIRITMNGIVFTSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSN
                     EKFRGVRLTLSNNLLKITANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKC
                     QRVRFSLVDSSSSCLIEDCDNSSAEYVIMPMRL"
     gene            complement(17786..18406)
                     /locus_tag="PXE92_000214"
     CDS             complement(17786..18406)
                     /locus_tag="PXE92_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDL5759508.1"
                     /translation="MSNEYLNKTEEQQFEDAKNWFKENGTPILVAIILACAATAGWNF
                     WKNHQLETAQKTSASYQSVMESYLQNPSKNQPLVEKFIADNKDSSYAAFAQFEVAKQA
                     VEKGNFSAAKTALQSVLTYSDSTLQSIARFRLAQIDFQLKSYDEALASLAQIQDKAWE
                     LRKQILTGDILAAKGDIPAAKSAYEQAKTTANPQEQTLIDVRLNNL"
     gene            complement(18416..19687)
                     /gene="hisS"
                     /locus_tag="PXE92_000215"
     CDS             complement(18416..19687)
                     /gene="hisS"
                     /locus_tag="PXE92_000215"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDL5759509.1"
                     /translation="MAKTIQAIRGMNDCSPSESPLWQWVEQKVRNVLASYGYSEVRMP
                     IVESTPLFARAIGEVTDVVSKEMYTFWDNDEQLTLRPEGTAGCVRAAIERGWIYNNEQ
                     RLWYMGPMFRHERPQKGRYRQFHQAGVEVFGIANPEIDAELIILTARLWKELGIDQHV
                     SLQLNSIGSLEARANYRSALVKFLENHTALMNEEEKERLVKNPLRILDTKNEALQNVL
                     NDAPKLLDYLDDDSREHFTQLCALLDAMGIRYEVNPKLVRGLDYYNKTVFEWVTSALG
                     SQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLVQEVNKEIDLPKTVDVYIVF
                     SGEGATLNAFQLAEQIRSELPHVGVMTHCSGGKFQKQFKRADKVEAQIALVIGESEVA
                     EKQVVIKDLRSGAEQITIAQSELIAELSKRF"
     gene            complement(19693..20805)
                     /gene="ispG"
                     /locus_tag="PXE92_000216"
                     /gene_synonym="gcpE"
     CDS             complement(19693..20805)
                     /gene="ispG"
                     /locus_tag="PXE92_000216"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDL5759510.1"
                     /translation="MIHQSPIKRRVSKKIYVGNVPVGGDAPITVQSMTNTRTTDVEAT
                     VAQIKSLERVGADIVRVSVPTMDAAEAFKAIKQQVSVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRTVVDCARDKNIPIRIGVNAGSLERDLQEKYGEPTPQALLES
                     ALRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARAGSV
                     KSAVGLGLLLAEGIGDTLRVSLAADPVEEVKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EIDVIATVNELEQRLEDIITPMDVSIIGCVVNGPGEALVSDLGVTGSNKMSGFYLDGV
                     RQKERFDNAKLIDQLEAKIRARVAQQHNRIDIEQIG"
     gene            complement(20906..21904)
                     /locus_tag="PXE92_000217"
     CDS             complement(20906..21904)
                     /locus_tag="PXE92_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4115 domain-containing protein"
                     /protein_id="HDL5759511.1"
                     /translation="MTESVNSTQAGTALSLGQQLKAAREALNLSITDVAQKTNLKKSH
                     IESLENDIFILQNVAPTFVRGYVRNYVKFLRLPESLISSVNYGEVTIPKEVTKVSSVK
                     PSSNSQGKTLKYLTVLVLLAALGMTLLWWWQGYQKEQENREQFVSSAPVAEVANTATN
                     NDASAQTSVPVQQPIQVSEQPAQVAETVVAAEPALTEKVEPTQAASSPVTQEDVKVVE
                     EVKQADATTAQVEAVNVLQQSQSEQAPTEQPVAVTNDELRIEITGSQSWITVRGAKNK
                     RLAEKLYNNGETLSFNENEQYRLTIGAPANVKVYYKGQEVPLKIDGRVARIHLPLQ"
     gene            complement(22072..23451)
                     /gene="argH"
                     /locus_tag="PXE92_000218"
     CDS             complement(22072..23451)
                     /gene="argH"
                     /locus_tag="PXE92_000218"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDL5759512.1"
                     /translation="MALWGGRFTQQADAKFKYFNDSLRFDYRLAIQDIEGSIGWAKAI
                     TSVGILTVAELEQLIAALKEVRAEVESNLTIILKDDAEDIHSWVESKLIEKVGDLGKK
                     LHTGRSRNDQVAVDIKMWCKVQAVALQERIRALQERLVSVAEENQESVMPGYTHLQRA
                     QPVTFAHWCMAYYEMLERDFSRLSDANKRMSTCPLGSGALAGTAYGIDRDLLARDLGF
                     EEATRNSLDSVSDRDHILELLSTASISMMHLSRFAEDLIIFNSGESGFLEMSDRVTSG
                     SSLMPQKKNPDACELIRGKSGRVFGALNGLLTTLKGLPLAYNKDMQEDKEGIFDALET
                     WQACLEIAELVLVDIQVNTERTREAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VYAISKKEPLEALSINEFQQFHHSIGDDVYPILSLESCLEKRCAKGGVNPQRVAEAIA
                     VAKANLASK"
     gene            complement(23568..24731)
                     /gene="mnmA"
                     /locus_tag="PXE92_000219"
     CDS             complement(23568..24731)
                     /gene="mnmA"
                     /locus_tag="PXE92_000219"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDL5759513.1"
                     /translation="MTTQLTSKTYDTHFPKLTPEQLAENSKKKVIIGMSGGVDSSVSA
                     FILQQQGYQVEGLFMKNWEEDDDTDYCTAAAELADAQAVADKLGMKLHKINFAAEYWD
                     NVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD
                     AKLLRGLDENKDQSYFLYALNKKQIGQSLFPVGEIEKPIVRAIAEDLGLATAKKKDST
                     GICFIGERKFKDFLARFLPAQPGEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGL
                     SEDPFYVVEKDLINNVLIVAQGHDNSALLSSGLIAKQLTWVDMQPLRENLRCTVKTRY
                     RQADIACEIQVIDDETIRVMFDEPQIAVTPGQSAVFYLGEVCLGGGIIESQLK"
     gene            complement(24842..25153)
                     /locus_tag="PXE92_000220"
     CDS             complement(24842..25153)
                     /locus_tag="PXE92_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL5759514.1"
                     /translation="MPNFGLSERATKTITDILAKYPEVEQAIIYGSRAKGNYREGSDV
                     DLTFKGKDLTYDIVKRIWGDLDDSDSPYLFDLSIYHQLTNANFIEHIDRVGKVFYQRE
                     L"
     gene            complement(25135..25551)
                     /locus_tag="PXE92_000221"
     CDS             complement(25135..25551)
                     /locus_tag="PXE92_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL5759515.1"
                     /translation="MNRDIRWKQRFDNYKKSVSYLQAEAEKYADTDIDVIKKGIIQSF
                     EITHELAWKLMQDILKWEGEVDIYGSKTASRLAFNRGLITQGEVWLEMIKSRNITVHT
                     DDETILTEEFNKIIKAYLPLFIEFEQRVETLCQTLD"
     gene            complement(25553..25798)
                     /gene="nqrM"
                     /locus_tag="PXE92_000222"
     CDS             complement(25553..25798)
                     /gene="nqrM"
                     /locus_tag="PXE92_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HDL5759516.1"
                     /translation="METVLLTFGFFVAVIFAMSIGFIVKGKTIKGSCGGITALGMKKM
                     CDCEEPCDNLKSKIADGTADPEEVARFNKEPQFYEVK"
     gene            complement(25811..26845)
                     /locus_tag="PXE92_000223"
     CDS             complement(25811..26845)
                     /locus_tag="PXE92_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HDL5759517.1"
                     /translation="MKKFFLLLIAFFTLSACEKAPEQITLSGKTMGTTYTVKYIDNGE
                     VENLISPEKMKNELDGLLIEVNNQMSTYQQDSEISRFNQAKQANQAVEISQDFAKVVQ
                     EAIRLNKVTEGALDVTVGPLVNLWGFGPDKRLNKVPSDEQIAERSAYVGIDKILLEMS
                     SKPKLTKSAANLYLDLSSIAKGFGVDKLAEHLETIGVSNYLVEIGGELRGKGKNLQGL
                     DWRIAIEKPVMTQGQAAQITVPLHNLAMATSGNYRNYFEDEKGNRLSHIIDPKQLRPV
                     NHNLASITVFAPTTMTADGLSTGLFVLGAEKALAVAEREKLAIFLIVKNGDKFETQMS
                     SEFSKLIQSQ"
     gene            complement(26894..27187)
                     /locus_tag="PXE92_000224"
     CDS             complement(26894..27187)
                     /locus_tag="PXE92_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL5759518.1"
                     /translation="MIDLTESQRQQVLDIFKKYLPDTPVWVFGSRIKGTAKAYSDLDL
                     ALITKQPLTIRQQTELELAFTDSDLPFTVDLIDWASCNESFKQIILQRYEVLI"
     gene            complement(27180..27614)
                     /locus_tag="PXE92_000225"
     CDS             complement(27180..27614)
                     /locus_tag="PXE92_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL5759519.1"
                     /translation="MEQLDITVLENAFNSLEKTIVSLENQAWFNRQEAIIQDTLIAGA
                     IQKFEFVYELSIKMLKRQLKNIESNDTDIDSTEFRDILRMAAQYGLIESPEVWLDYRK
                     MRNITSHTYDQNKAQQVYNGISNFLESTYFLVKQLQKRNSYD"
     gene            complement(27726..28955)
                     /gene="nqrF"
                     /locus_tag="PXE92_000226"
     CDS             complement(27726..28955)
                     /gene="nqrF"
                     /locus_tag="PXE92_000226"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HDL5759520.1"
                     /translation="MDSNFIFGIIAFTALVLVLAVIILFAKSKLVDSGDITISINNDP
                     EKGITLPAGGKLLGALASKGIFVSSACGGGGSCGQCKVQVKSGGGEILPTELSHISKK
                     EAKEGWRLACQVNVKSSMDVELPEEIFGVKKWECTVISNDNKATFIKELKLQIPEGEE
                     VPFRAGGYIQIEAEPHTVHYKDFDIPKEYHEDWDKFDLWRYTSKVDEHIIRAYSMASY
                     PEEKGIIMLNVRIATPPPRNPDVPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAE
                     MVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSEREMFYVEDFDGLQAENDNF
                     KWYVALSDPLPGDREDYFRGFIHNVLYENYLKNHEAPEDCEYYMCGPPVMNAAVIGML
                     KSLGVEDENILLDDFGG"
     gene            complement(28966..29562)
                     /gene="nqrE"
                     /locus_tag="PXE92_000227"
     CDS             complement(28966..29562)
                     /gene="nqrE"
                     /locus_tag="PXE92_000227"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005529392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HDL5759521.1"
                     /translation="MEHLLSIFVKSIFIENMALSFFLGMCTFLAVSKKVSTAFGLGIA
                     VIVVLGIAVPANQLVYTHVLKEGALVEGVDLSFLNFITFIGVIAALVQILEMILDKFF
                     PALYSALGIFLPLITVNCAIFGGVSFMVQREYNFVESVVYGVGAGTGWMLAIVALAGL
                     TEKMKYSDVPAGLRGLGITFITVGLMALGFMSFSGIQL"
     gene            complement(29564..30190)
                     /locus_tag="PXE92_000228"
     CDS             complement(29564..30190)
                     /locus_tag="PXE92_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005717817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HDL5759522.1"
                     /translation="MADNNNLKKLLLSPIVDNNPIALQILGICSALAVTTQLQTAVVM
                     AIAVSLVTAFSSMFISMIRNYIPNSIRIIVQMAIIASLVILVDQILRAYAYDLSKQLS
                     VFVGLIITNCIVMGRAEAFAMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKI
                     FGITILETVQNGGWYQANGLFLLAPSAFFIIGFVIWAIRTWKPEQVEK"
     gene            complement(30190..30963)
                     /locus_tag="PXE92_000229"
     CDS             complement(30190..30963)
                     /locus_tag="PXE92_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HDL5759523.1"
                     /translation="MAKFNKDSVGGTLTVVVLLSLICSLIVAGAAVMLKPTQDIQKQL
                     DKQKNILQAAGLLQKDTNVQETYTKFIEPKIVDLATGDYVEGVTGFDARAAAKDPAQN
                     VVIAPEDDKANIKTRAKYAEVYLVKDESGKTTQVVLPMHGNGLWSIMYGFVAVQPDAN
                     TVNGITYYEQGETAGLGGEIANPNWQKNFVGKKLYNEQNQVALRVGKGASADKDHGVD
                     GLSGATLTSNGVDGSFKYWFGQNGFGPYLAKFKAAAGAN"
     gene            complement(30956..32191)
                     /locus_tag="PXE92_000230"
     CDS             complement(30956..32191)
                     /locus_tag="PXE92_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HDL5759524.1"
                     /translation="MGLKNLFEKMEPAFHKGGKYEKWYTLFEAAYTIFYTPGTVTRKD
                     AHVRDAIDSKRMMLIVWLALFPAMFYGMYNVGAQGILAALKMGTLTDLVANNWHYSLA
                     DSLGSVADAGWGTKMLLGATYFLPIYLTVFAVGGFWEVVFAMVRKHEINEGFFVTSIL
                     LALIVPPTLPLWQAALATTFGVVVAKEVFGGVGKNFMNPALAGRAFLFFAYPGQISGD
                     AVWVAADGFSGATALSQWAVGGQGALQHVATGETITWMDAFLGNIPGSIGETSTLMLI
                     IGAAIIVFARIASWRIIAGVMIGMAATATLFNVIGSDTNPLFSMPWHWHLVLGGFAIG
                     MFFMATDPVSAAFTNKGKWAYGILIGFMCVLIRVVNPAYPEGMMLAILFANLFAPIFD
                     YLVVQGNIKRRLARVANNG"
     gene            complement(32194..33552)
                     /locus_tag="PXE92_000231"
     CDS             complement(32194..33552)
                     /locus_tag="PXE92_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit A"
                     /protein_id="HDL5759525.1"
                     /translation="MITIKKGLDLPIAGKPEQVIHNGNTVTEVAMLGEEYVGMRPSMK
                     VREGDVVKKGQVLFEDKKNPGVVFTAPASGTVTAINRGEKRVLQSVVIKVEGDEQITF
                     ARYEASQLASLTSEQVKQNLVESGLWTAFRTRPFSKVPALDAEPSSIFVNAMDTNPLA
                     ANPEVIIAEHQQAFFDGLTVLSRLFESKKVIHLCGSADSNILNAAQSRQINNVETNRF
                     KGPHPAGLSGTHIHFIDPVGATKQVWYLNYQDVIAIGKLFTTGELFTDRVVALAGPQV
                     KNPRLVRTRLGANLSQLTANELNAGENRVISGSVLSGAIATGVHDYLGRYALQVSALL
                     EGREKAFFGMIAPYSDKYSITRTTLGHFAKKLFNFTTAVHGSERAMVPTGAYERVMPL
                     DIIPTLLLRDLAAGDTDSAQALGCLELDEEDLALCTFVCSGKNNWGPLLRQALDKIEK
                     DG"
     gene            33999..34595
                     /gene="nfuA"
                     /locus_tag="PXE92_000232"
     CDS             33999..34595
                     /gene="nfuA"
                     /locus_tag="PXE92_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HDL5759526.1"
                     /translation="MEEQTIHISISDAAQAHFARLLEQQEEGTNIRIFVVNPGTPGAE
                     CGVSYCPPNAVEETDTEFKFNRFSAFVDDISLPFLDEAEIDYVTDPMGSQLTLKAPNA
                     KMRKVADDAPFIERLDYVIQTQVNPQLASHGGKVTLIEITEDKYAVLQFGGGCNGCSM
                     VDVTLKEGIEKQLLAMFPDELVGVKDITEHQHGEHSYY"
     gene            complement(34763..36400)
                     /gene="pyrG"
                     /locus_tag="PXE92_000233"
     CDS             complement(34763..36400)
                     /gene="pyrG"
                     /locus_tag="PXE92_000233"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HDL5759527.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLASILEARGLNVTIMKLDPY
                     INVDPGTMSPTQHGEVFVTEDGAETDLDLGHYERFIRSKMSKANNFTSGKIYSEVLRK
                     ERRGDYLGATIQVIPHITNEIKARVLEGGKGRDVAIVEVGGTVGDIESLPFLEALRQL
                     AVDIGREKTLFMHLTLVPYIPTAGEVKTKPTQHSVKELLSIGIQPDVLICRSDRAIPE
                     NEKKKIALFCNVPERAVISLKDVDSIYRIPELLKSQGLDSFVCDRFRLDCKEADLSEW
                     EQVLYCQANPTGEVTIGMVGKYVELPDAYKSVNEALKHAGLTHRLTVNIKYIDSQDIE
                     TKGTELLAGLDGILVPGGFGYRGVEGKIRTAQYARENKIPYLGICLGMQIALIEYARN
                     VAGLTEANSSEFDKDCSQPVIGLITEWQDAEGNVETRSDESDLGGTMRLGSQQCHLIE
                     GSKARELYGAETIVERHRHRYEVNNKLLPQIEAAGLKVSGLSADRKLVEIIEVPNHPW
                     FIAAQFHPEFTSTPRDGHPLFAGFVKAAKDHQESRKA"
     gene            36664..37713
                     /gene="ansB"
                     /locus_tag="PXE92_000234"
     CDS             36664..37713
                     /gene="ansB"
                     /locus_tag="PXE92_000234"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HDL5759528.1"
                     /translation="MKIKKLLLPTLLSIATMPIQAADLPNITILATGGTIAGSQKNTA
                     TSAYQAGQLNIETLIEAVPDIKKLANIKGEQIVKIGSQDMSDEVWLKLAKAINQQCPN
                     TDGFVITHGTDTMEETVYFLDMTVKCEKPVVLVGAMRPATEKSADGVLNLYNSVVVAK
                     DSKSSGRGVLVAMNDIVLGARDVTKTSTTSVQTFNSPNFGALGYIHNSKVDYERSPES
                     KHTVNTPFKVDELTELPKVGIIYAYSNMPTEPLQALLDASYQGIVVAGVGNGNMNAAN
                     LALLEEAAKKGITVVRSSRVPTGYTTRDAEIDDSKYGFIASGTLNPQKARVLLQLALT
                     QTNDIKTIQQYFEDF"
     gene            complement(37787..38431)
                     /locus_tag="PXE92_000235"
     CDS             complement(37787..38431)
                     /locus_tag="PXE92_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759529.1"
                     /translation="MRIWQKLASVIVVTLGLISNASAENFKLKYSSNYLMPAYINFNN
                     GGGQYNIQAKINVPLYNIVFSAKGTEKNEQFHMLSYRDTRNGKTYAMAEIDSKTVKYG
                     KVKEPLKEEALTMPTYDLFTTAFQLSYYDKLPSSFQTTNGKKLYPTPNVQLRKAQKEV
                     KVGGKTYQEITYKFRTSDKKDITVKKFEGEKFPRYIAYSRDGDNYELTFDSFVK"
     gene            complement(38432..39415)
                     /gene="cysB"
                     /locus_tag="PXE92_000236"
     CDS             complement(38432..39415)
                     /gene="cysB"
                     /locus_tag="PXE92_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HDL5759530.1"
                     /translation="MKLQQLRYIVEIVNQNLNITEAAEVLYTSQPGISKQVRLLESEL
                     GINIFERNGKHVKGLTPAGEKIVAIARELLVKAQSIKSVAEEQTRPNKGILRIATTNT
                     QARYMLPSVIEKFKARYPEVSLHLHQGSPNQIYDALVAGEVDLAITTEAQYLFDEAVL
                     LPCYWWNRSVIVKPEHPLAAFVNQSKNLTVEQLGRYDLITYTFGFTGQSDLDHAFNKE
                     GILPNIVFTATDADVIKTYVRLGLGVGIMASMAHTETDKDLVAINASHLFQPSMTQIA
                     FKRGTFLRNYMYDFINYFSPHLTRVQVEKAEQLRDNNAISRLFESISLEEK"
     gene            complement(39412..40095)
                     /gene="yjjG"
                     /locus_tag="PXE92_000237"
     CDS             complement(39412..40095)
                     /gene="yjjG"
                     /locus_tag="PXE92_000237"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HDL5759531.1"
                     /translation="MKYQWVLFDADETLFSFNSYLGLKAMLARYQIDFSEQDYQDFQA
                     VNKPLWVAYQNNEITAQDIQTRRFVKLSAQTGVDPLQLNQELMAEMAFVSQPLEGVMD
                     MLNALYGKVKMGIITNGFTDLQQKRLDNTQTSHFFDIVVISEQIGAAKPDRQVFDYAF
                     ALMDEFDRTKVLMVGDTLASDILGGNNAGIDTCWLNLLSKENDTDIKPTYEVHTMQQI
                     IAIVEGKSL"
     gene            complement(40171..41064)
                     /locus_tag="PXE92_000238"
     CDS             complement(40171..41064)
                     /locus_tag="PXE92_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GcvA"
                     /protein_id="HDL5759532.1"
                     /translation="MNKKLPPLNALKAFESAARHLNFTKAAEDLFVTQAAVSHQIKLL
                     EDFLGASLFHRRNRLLELTELGAQYFYEVQPLLEQIALATDKIRQQSSRQILTISVPQ
                     TFGMHWLVPRLADFHEKYPEVEVRIKGVDQDEGLLGKETDVAIYYGKGDWQGLESIRL
                     TESRIVILASPEYLSQNTIHLPADLAGKHLLHSSTHNKWKRMVEHLHIEDIVDAETGS
                     IFSHTFMVLQAAMHQQGIAIANQLLAQHEIEKGTLIEPFPTTLFDEKSFYVVYPSQSA
                     QVQKVQFFVEWIQQKMKECCA"
     gene            41510..42547
                     /gene="rsgA"
                     /locus_tag="PXE92_000239"
     CDS             41510..42547
                     /gene="rsgA"
                     /locus_tag="PXE92_000239"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HDL5759533.1"
                     /translation="MSKPKLTHNQQRRIQSNHHKRINKKEIEWQDEMLGEMQQGIVVT
                     RHVKHADVETAEGQIFRCNIRRTLKNVVVGDQVSWRKGSEQLQGISGVIEAVFPRKNE
                     LTRPDYYDGIKVMASNIDQIIIVSAVLPTLSLNIIDRYLVICETANIPALIVLNKIDL
                     LNESERQAVKEQLKIYEEIGYETLCLSADTGENMQALHQYLAKGTSIFVGQSGVGKSS
                     LINQLLPEVNALTGSVSDNSGLGQHTTTASRLYHLPQGGQLIDSPGIREFGLWHLEPE
                     QITLGYREFQSVLGTCKFRDCKHKTDPGCALRQEVENGEISAIRFENYHRLIESLSET
                     KSQRHFRKEEV"
     gene            42544..43143
                     /gene="rnhB"
                     /locus_tag="PXE92_000240"
     CDS             42544..43143
                     /gene="rnhB"
                     /locus_tag="PXE92_000240"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDL5759534.1"
                     /translation="MMNEFIYPNARLIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGL
                     TDSKKLSEKKRQALAEEIKAKALSWSLGRAEPTEIDELNILNATMLAMQRAVAGLHIQ
                     PDFVLIDGNRPPKLPMPAQAVVKGDSLVAEISAASIIAKVARDQEMDELDQQFPQYGF
                     AQHKGYPTKLHFEKLAEFGATPYHRKSFAPVRKVLGLID"
     gene            43156..43515
                     /locus_tag="PXE92_000241"
     CDS             43156..43515
                     /locus_tag="PXE92_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HDL5759535.1"
                     /translation="MTTEYQKTIFTKIINKEIPANIVYQDELVTAFRDIAPQAPTHIL
                     IIPNKFIPTVNHVSNEDELALGRLFTVAAKLAQEEGIAEEGYRLVMNCNKNGGQEVFH
                     IHMHLLGGQKLGPLVAK"
     gene            43518..43889
                     /locus_tag="PXE92_000242"
     CDS             43518..43889
                     /locus_tag="PXE92_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HDL5759536.1"
                     /translation="MRISYFAFAIFSIFLTACGSKPVSYLPTGSEPIVNIESDIAEKI
                     ELETNSKQFSTTNLTEFPLNLTYKLFWYNKDGVTQSHNGISDSIGWQHLWLQPKQKQT
                     IALIKPTEESHNYRLYLRGVK"
     gene            complement(43924..44553)
                     /locus_tag="PXE92_000243"
     CDS             complement(43924..44553)
                     /locus_tag="PXE92_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5759537.1"
                     /translation="MFNLQIIPVSPFQQNCTVIWDENKNAAIIDGGDNAEGIIQFVES
                     QQLKVQKLLITHGHLDHIMAVEKLREHFQVEVFGSHLADKPLFERLPEMCQQFGLPPV
                     NGFLPDHWLEEGDRVEVGELSYTVRHLPGHAPGHIGFFDFDNRIAFSGDVLFQNSIGR
                     TDLYLGNHSQLLETIREKMFDLDDDFIIIPGHGPHTTIGREKQTNPFLK"
     gene            complement(44570..45124)
                     /locus_tag="PXE92_000244"
     CDS             complement(44570..45124)
                     /locus_tag="PXE92_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HDL5759538.1"
                     /translation="MKQINVQRRKWLSLGGLVLGASLLPGQVMAALSTPAPAALRFRN
                     VNTGDTYTAKFGAGGLNKTDLSQLNYLMRDRHINQVKAIDPKLFVKLNQLQRRLGFHN
                     AEILVLSGYRSAQTNARLRRRSRGVASHSYHILGQAVDFQVSGVPLYKVKQAAESLNN
                     GGVGYYPRSNFVHVDTGPVRTWRG"
     gene            complement(45294..46799)
                     /locus_tag="PXE92_000245"
     CDS             complement(45294..46799)
                     /locus_tag="PXE92_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HDL5759539.1"
                     /translation="MVAFSGMALAETATVAQVASEPVVQDNILPQLSFAAQQARAAEL
                     VKQADYALEQEQIRQEQARKFAEAEARIKQEIGNNALLLSQATTKVYLDSEFATMWND
                     KAAEKAFLKEYALFAVSGVSSKSAKALQQILNQPEGLGRDILLTDGFLDYLYYNKNVF
                     KNANNWLYNLGSYVPKSPSSEQIFQWTNAVREGDSGQFVTDLVPRNHLYRDTAQRVLA
                     MAGGSSAPKAKKGKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNGIFVNIPSYQLY
                     YFRDGNLALQSKVIVGREDRRTPVMYSKLSNVVVNPPWNVPTSIMTKDIIPKLARDPG
                     YADRASFEILDSSGNKINPRSVNWSQYLNAKSSPYRIRQKAGDDSALGRYKFNMPSSD
                     AIYLHDTPNRGLFGKTGRALSSGCVRVEKSDELATILLKEAGWGSDKKNQVLGSKKTT
                     SAQIRSDNPVYLYYVTAWVEGGKVQTLPDIYNFDAKIPQHSVNWGKLKSII"
     gene            complement(46917..48929)
                     /gene="prc"
                     /locus_tag="PXE92_000246"
     CDS             complement(46917..48929)
                     /gene="prc"
                     /locus_tag="PXE92_000246"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HDL5759540.1"
                     /translation="MKLTRLNKIFALALGLMIGNAFAVQPDIKESAIVMPKPNEQHSL
                     STKRVTARLTQSHYHKFQLNDEFAGKIFNRYVDWLDPSHNTFLQADIDEMRSKYATTL
                     DDDLYAGKLDAAFAMYELMSKRRYERYSYALSLLDKEPDLKGNDEIEIDREKAAFPKS
                     VEEANTLWEQRVKNDIINLYLKDKKWPEIKKTLTKRYNFAIKRLTQVKADDILQTYLN
                     SFSREIDPHTSYLSPRAAKAFQESMNLSLEGIGATLTQEDDVTSIRALVPGAPAAKSK
                     KLVVGDKIVGVGQGERGEIEDVIGWRLDNVVDKIKGKKGTKVRLEIEPEKGGKTKIIT
                     LVRDKVRIEDSAAKLTVEKVDGKNVGVIKIPTFYIGLTSDVRKLLTQIEKKNVEGLII
                     DLRENGGGSLTEVIELTGLFIKDGPVVQVQDAFNRIKVHEDPESKSVYDGKVMVMINR
                     HSASASEIFAAAMQDYNRAIIVGQQTFGKGTVQQSRSLNFVYDLDQEPLGFIQYTIQK
                     FYRINGGSTQLKGVEADIKFPEIINAAKTGESFEDNALPWDKIPAANYKEAGNARNAV
                     AALTAKHQERIAKNPEFIVLNENIAIRKERDERKFLSLNLEERLKENKADESKRLKDI
                     NARFAREGKKALKDIDDLPKDYEAPDFFLKEAEQMMLDWSEFDKKS"
     gene            complement(49015..49551)
                     /gene="proQ"
                     /locus_tag="PXE92_000247"
     CDS             complement(49015..49551)
                     /gene="proQ"
                     /locus_tag="PXE92_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HDL5759541.1"
                     /translation="MSEQIEQKVEQTQNKTNPSTKEVIAYLAEKFPLCFTLEGEVKPL
                     KVGLFQELAEALKDDEKISKTLLRQVLRNYTNSWRYLAASQANVARVGLQGEEVGVVT
                     EDEATHAAEALAAAKAVVAERKAQERKAQRKEYFKQKAREENAKKRAEFKAKKAIDNL
                     PKASEEKLAALADKFGRK"
BASE COUNT        14860 a        10738 c         9362 g        14835 t
ORIGIN      
        1 taaaacccat aaaaatcagc taaaaatttg ctctatgtct caaaaatgag atttgccgtt
       61 tgaatcgccc aaaaaattgg cttagactaa attggtctaa acttccataa catttaggag
      121 aaattttatg tgtcaaagta aaaaagttgc ccttttaggt gctgcaggtg gaatcggtca
      181 atcactcgcc ttattattaa aactcaattt accggctaaa tctgaattat ctctttacga
      241 tatttcccct gttactccag gaattgcagt ggatttaagc catattccaa ctgatgtaaa
      301 agtaaccggt tttgcaggtg aagatccgac tgaggcacta aaagatgccg atgtggtcgt
      361 tatttctgct ggtgttgccc gtaagccggg gatgacacgt gccgatttat tcaatacgaa
      421 tgccactatc gtgcataact tagtcgaaaa agcagcgaaa gtttgcccta aagcttgcat
      481 tgcaattatt actaacccgg taaacaccat tattccgatt gcggcagaag tattgaaaaa
      541 agccggtgtg tatgacaaaa ataaactttt cggtgttaca acattagatg ttattcgagc
      601 gaataccttt gtggctgaag cgaaagacgt aaatgtgaaa tatgtaagag tgcctgtgat
      661 tggcggacat tccggcacaa ctattcttcc actgctttca caagcaacag taaatggctt
      721 aaaacttgag ttcactcaag aacaaatcga gcaattaact catcgtatcc aaaacgccgg
      781 tactgaagtg gttgaggcaa aagcaggtgg tggctcagca accttatcta tggctcaagc
      841 aggagcagaa tttgcacttg gtttagtgag agccttaatc ggggaagatg tcattcgtta
      901 tgcttatgta gataatgcca atggcgaaac ctctccggca ttctttgctt acccgattcg
      961 tttaggtaca aatggtgtgg aaaaagttct acctatcggc aatctcagcg aatttgaaaa
     1021 agatcaacta gagcagttaa ttcctgtatt aaatgatgaa attcagttag gacaaacttt
     1081 taataaaaat gcttaaggca taactttaag ggttgagaaa tcagcccttt ttaacattct
     1141 ctcaattaaa aatataaaaa cggaaattac ccatgaaaaa acaccatatc attatactta
     1201 cattggcttc agcatcggtt gtagcttgca gctcgaacac ccccgttcaa gtcgtaaatg
     1261 gcgacaaaaa tatagactat tctcaaccta aaacgatcta tattagtgaa accaatactc
     1321 aaccgccagc cctaactaaa caggaaaaga ttaaaccatc gaatgctact gctctttgtt
     1381 ttaacggtag ttactctact gatattcaga atccttgcaa gaaagatggc ggagttaagc
     1441 aatattttgc ccatcatcac gccaattaaa aatcctataa aaaatgcaca atgtatctta
     1501 ccattgtgca ttttttctat gttttatttt ctgatttttc tggctgctct ttttccggtt
     1561 cagggtcaaa cttcaccaca gggacacaac ctcggcaagc accttgattt acccctagct
     1621 catcgcaaaa ggcatcatat ttctcaaggg cttttttaaa ccagcctttc ttttctgttt
     1681 gctcgctcat catctcttcc ttttatgttg aattattaat gcaagcggtc aaattttgct
     1741 gaatttttcc acttgtcatc attaattgca ggaattgcta atcacggaaa ttattaaatt
     1801 ggaatggctg ccctaaatct gcccctttca ctagctgaat tgcggcttgt aaatcatcac
     1861 gagatttgcc cgttacacgc acttgctcgc cttgaatttg ggcttgaacc ttgattttag
     1921 aatccttaat cagcttggta attttcttcg ccatatctga ctcaatccct tgcttgagct
     1981 taatttcttt ggaatagagt ttaccgtgat gctcactttc tgtagggata tctaatgaac
     2041 tatgctcgat cccacgtttt acacaagagc cgattaaaat ctcaattaac tgctctaatt
     2101 ggaaatccga ttcggtcgtg agcttaatgc tttcattttt ttcatttaac tcaataacgg
     2161 cttccacccc acggaaatcg tagcgggtgc ttaatacacg attggcattt tctaccgcat
     2221 tacgcacttc gtgcatcgtg atttcagata caatatcaaa tgatggcatt gttgttcctc
     2281 tcaattaatg ttgaaataaa tgattggcat taagtaataa acataatgcc gttaagtccc
     2341 cgaagtttac cacaaaatca gcttgtgctt gcacttttgg tttagcgtgc aaagcaacgc
     2401 ctaaactggc ggtttttaac attggtaagt catttgcccc atcgccgact gccacccatt
     2461 gatttggtgg aatattaaag gttgtcgcta aattctgtaa ggtatcggct ttatgttgag
     2521 catccactac tttgcctaac accttgccgg ttaatttacc gtcaataatt tccagttggt
     2581 tagagaccgc aaaattcaac ccgtattttt gttttaagta atcggcgaag taatcaaatc
     2641 caccggacgc aatcgctaat ttccagccgt gttccttaag aatagcaacc atctgctcaa
     2701 agccgtccat aagcggtaga ttttcccgca ctttttgcaa aatgctttcc gatgcatttt
     2761 ccaacgtgcc gactcgcttg cgtaaacttt gctcgaaatc cagctcgccc cgcattgcac
     2821 tggcagtaat ggcggacacc acctcgccgg tgccggcaag tttggcaata tcatcaatac
     2881 attcaatttt aatagcggtg gaatccatat ccattaatag caaaccgcct tggtttaagg
     2941 ttggaataat agtgagatcg ctaatatccg cattgatttt ctgtgccgtt tcacgcagct
     3001 cgcaagcggt taaatttgtg gaaaaaaatg caattttgta gtctaaatag accgcttgtt
     3061 tcagcaaaat tgctgccgtt tgttgtgaaa actgttcaat ttcacgctcg tttaaggttt
     3121 ttgaatagat aaaaattgtg tttgtcattg tcttatttta ggttgtttaa atttactgca
     3181 ctaatctaac agaaaagcgt gctacaatca cgcatcattt tgagggaatt tcgatgtaca
     3241 ttagtcgtga aaaaataacg aaaacgcttt tgctggcagg gattacgcta ctctgctgtg
     3301 ggatcgtggc ggttatttta atgggcgtaa accaatttaa gctaggctca caattggcca
     3361 gcattaatca agtatcaaac ctttcacacc tattggttcg ccagcaagca aatatttttt
     3421 cgtttttgtt agttaaaaat gccaaaaccg atgagctggt tgatgcgttg gatagttttg
     3481 ccaaagaaga ttttattatt gatgccaata tctattcacc aaatggcgtg ctactggctc
     3541 aaagccaaaa tgcgaaagat ttaaaagtat tgctcgattc agagcaatct gccaaaactc
     3601 agcaaattgt tgagccaata ttttctcaac aggcgttggt tggcttttta cgcgtcacgt
     3661 ttgatgcaga atatgggcaa actactaaag cacgagtaga gcaacaattt catcaacttt
     3721 atggggaaat aattattttg ctactcacag gtatattgtt ggcaagtagc attaactact
     3781 attttcgtcg taaaattcat catgtacaga taagcccaaa accacttatg agtcaagtaa
     3841 aaacccaaac ccagcgtttt cactcacgtc gccgttggat taagcgtaaa tagtttacac
     3901 tcaaatggat aaacgattgt aatttgagcg aataagcgta taatatccgc cgtttttcgc
     3961 cgaatggcat catataaaaa ttaaaacttt aaagaggaat aaatggctaa agaagattgc
     4021 attgagatgc aaggtacgat tttagaaacc ttaccaaata caatgttccg tgtggaatta
     4081 gaaaacggtc atattgttac cgcacatatt tcaggcaaaa tgcgtaaaaa ctacattcgt
     4141 attttaaccg gtgataaagt aacggttgaa atgactccat acgatttaag caaagcacgc
     4201 attattttcc gtgcaagata attcagcata aaataaggcg aacaattgtg ttcgcctttt
     4261 tgtttggttt tttagttatt tgctttttta gttatttgct tttttcaata atcccttctg
     4321 cacaggcaaa agcagatgac cacgcccatt ggaaattata accaccaagc cagccggtaa
     4381 catccagcac ttcgccgata aaataaagcc ctgctgtatt tttcgcttcc atcgttttag
     4441 atgaaatata gtcggtatca acaccgcctt tggttacttc cgctgtacga tagccttccg
     4501 tgccgtttgg caagaaatgc caatggtgga taaattgctc taataaggtc agatcttttt
     4561 tactcaaatc ggcaatcact ttatcggtca gcaatttctg ttccagccaa acttcaacca
     4621 attttttagg taaataacga gataatacgg tttttagctg taatttcggc gaagattggc
     4681 gtagttcgct caatatatcg gtaatggact gcgaaggtag cagatcaatc tctaccgttt
     4741 cccccaattc ccaataattg gaaatctgca aaattgccgg gccggataag cctctgtgcg
     4801 taaacaacat ctgattgcta aaacttttgc cattggcgga aacagtaatc ggcagtgcaa
     4861 tgccggaaag ctcggcaaaa tatttatcgc tctctttcca agtaaaaggc acaaggcttg
     4921 cacgtggtgg cacaacagga ataccaaact gctcggcaag ttgatagcca aaagggcttg
     4981 ccccgagagc cggcattgaa agccctccgg ttgcaatcac taagtgttcg gattggaact
     5041 tgccacaagc ggtcgaaatt tcaaaaaaat ttgcaacttt ttccacagaa atgaccgctt
     5101 gccgtaacag aatctcaacc ttgcctttgt tgcattctgc ttgtagtaaa tcgacaattt
     5161 gttgcgagct ttcatcacaa aacaactgcc ctagctcttt ttcgtgatag ctaatgccat
     5221 agtggctgac aagcgaaata aaatcccatt gggtataacg tgaaagggcg gatttcacaa
     5281 aatggcggtt ttggctaagg taatttccgg cacttacgtc taaattcgta aaattgcaaa
     5341 aaccaccgcc agacattaaa attttacgtc cgactttctt accgctgtct aacaccacca
     5401 cttttttgcc agcttgcccc agttgggcag cacaaaacag ccctgccgca ccggcaccaa
     5461 tcaccacaac atcaatattt tgcattaaaa attcagtacc ttatctgctt gaattgtcca
     5521 atctgccagt tcaattaatg tgccaatctc taccccatcg gctaaaggca aatctgtaat
     5581 ccctcgagca ttagtacagg ttttgcataa ttttacgttt gccccttggg cggttaaaat
     5641 ttccagcatt tgctgaatat gataaccctc tgccggattt tgctttgcca gccctgcggt
     5701 gactgcatcc gacattaaga aaagtttaat ttccgtattg gctttatgtt gttcttgaat
     5761 ttgtaatgcc aaacgcaacg cactgaaaaa cgtttcattg ccgtaaggag cagaattgat
     5821 gataaaaaga agtttttgaa ctgaattaga cattgtttta cctcggaata cacgaaacac
     5881 atagataatg aatcaaatac cctctcccct ttgtgggaga gggatagatt tttcttcgtt
     5941 tagaagaaaa atcagggaga ggggggtaga gcttaaccca cccacacaaa tttagcaata
     6001 aagagaagtg aaaccactaa aacagaaagg ttgatttctt tccaacgccc tgtaaaggct
     6061 ttcattacgc agtagctgat aaagccgaat gcaatccctt cagtgatgga gtaagtaaac
     6121 ggcatcattg cggtagtaat aaatgccggc gtagcttcag ttaaatcgtc ccattttact
     6181 tcaattaagc tagatgccat taaaattcct acaaatacca atgcccccgc agttgcatag
     6241 gcaggtacta accctgcaag tggtgagaag aaaatggtta ataggaataa gatcccaact
     6301 accaccgcag ttaagccggt acgaccgcca actgaaacgc cggagccact ttcaatatag
     6361 gtagaaatcg ctgaagttcc catataagag cctgccattg cagcggtact atctactagc
     6421 agagcttgtt tcattttcgg gaaacgccct tgttcatccg caaagcctgc tttggtagtc
     6481 accgcaatta aggtgccgga agagtcaaac aggtttacca acataaagga gaaaatcatc
     6541 ccgagtaagg caacatcaaa agcaccggca atatcaacct gccccacaac tgccccaagg
     6601 cttggtggca tagacattat gccgttaaag ctcaccgccg ggtcaaaggc taaggcaaga
     6661 gcggtaacaa tcacaattga aattaacacg cctgagtgaa tacctttcgc cgctaataca
     6721 acaatgatga aaaagcctaa aatccccatt aacactttcg ggtcgtgcaa atcacctagt
     6781 gccacaagcg ttgccggatt tggcaccacc aagcccatat ttttaaaacc gattagggca
     6841 atgaataaac cgataccggc accaatacct acacgtaaac caagtggaat cgcagacata
     6901 aaccagtaac gaacttgtaa tacagttaat aggaataagc cgacagagcc taagaaaatc
     6961 gcccccatac ccacttgcca cgagtaacct aatttttgca ccactacgaa tgcaaaaaag
     7021 gcatttaagc ccattgccgg tgcaagagca atcggtaaat tactgaataa ccccattgcg
     7081 atagtaccaa aagcggcaat taaacaagta gtcacgaaca ctacttgggt gtccattccc
     7141 gccacgccta aaatagacgg attgacgaaa acaatataaa ccattgtgaa aaaggtagta
     7201 ataccggcga taatttcggt ttttacatta ctgccttttg ctttgagctg aaataatttt
     7261 tctaacataa gaccttcggt gtttaaacaa aatgacaacg cccaagcaat cggttgctcg
     7321 ggcgttgacg atttttatca cggaataaat acttttgcaa gcacttaata cgctaaaact
     7381 aattttagta atttcaccgc taaaaatgcc agactgaaac gctgttcatc ggcgaccgtc
     7441 cagaactgca cttcctgttc ggatttcgcc aataactgac tgatttctaa cgcattttgc
     7501 tcttcgtttt cgccattttt caccgctgta atcactgaat tttcattaaa attcagccaa
     7561 ttttcggctt tccaagcttc acttaacgca ttagcatcta actgatattc agactgcacc
     7621 gacaccattt gggaaacccc ataaaagacc ggcacttgca cgctgtggaa ggtagtacaa
     7681 gcggtcaaat ttggtaaaac ttttgcaatt tgcagttcaa aggcttttga gaacggcaga
     7741 cttttctctt ctccttgcac attagccggc acaacatcaa aggcaatgcg ttccgcattt
     7801 tcatcaaacg gaatgccgtt taacaaacgg gcagtttgtc cggcaagctc cttgactttt
     7861 tcatcgccaa aataggcaga cggtaaaagt gaggttaccc acacctgttt taacggctcg
     7921 ttcaacaatg gctttaaggc taacgccagt tgtgaaattt gcggattggc taaagcaacg
     7981 atatttcgct cacgcaaatt tgcgacattt tcatcattta cacttggcac aactaccggt
     8041 acatcgccga tgagtgcggt aatgccgtat aaatctaaaa tcacacagcc ggctttcacc
     8101 gcttctgcca acacttccgc ttgtgccatt ttgccggcaa atagaacatg gctaaattcc
     8161 gcccaattta cttcatctaa cgcatattgt gcgactgctt ttgccccaaa gcgtaaattc
     8221 tgctcttcac caaacggctc aagctcaacg gctgaaatat tttcaatccc taaatcttga
     8281 tttgctaatg cttcaagtaa tttttctgcc agcgtaaaat cagcggcaat cgctaaatgg
     8341 atattcgaca cactatctcc tttttcataa cgttattcgg tttcattata agctaatttc
     8401 acgcttcaga aaaatcataa ctcataatgt gtaatttatg gtttttgcaa attttaaacc
     8461 taaaaacacc gcttgttttg cctgtaattt acttttcaaa tgattgaact tttgatatag
     8521 ttcacacttt aaaagtagct tatcattctc attaaaactg aggattagct aaagcccaat
     8581 agtaaaacaa aatggcaaaa caagattcag attgtataac cttagatctg tttgcgactg
     8641 taccaaaagt tgggcgtcct cgtacaaatc ctcttgatag agaacaacaa cttcgaatca
     8701 ataaacgtaa ccaactaaaa cgagataaat cttccggttt aaaacgggta gaattaaaac
     8761 tgcattcgaa tttagtaaag ttattagagg aacaggcgtc tgaacaaggt gtttcacgcg
     8821 ggcagttaat tgaaacaatt ctaaataatt atctcacaaa taggtagtag caatggcagt
     8881 tgtaggttta ttttacggta gcgatacagg caatacagaa aatatttcaa aaatgattca
     8941 gaaaaaatta ggggctgaat taattgatat tcgagacatt gccaaaagca caaaagaaga
     9001 tattgaagca tacgattttc tgatgtttgg gatcccaact tggtattatg gtgaatcgca
     9061 agccgattgg gacgatttta tgcctaccct aaaagagatt gattttaacg gcaaagtcgt
     9121 tgcaattttt ggttgcggtg atcaggaaga ttatgcagaa tatttctgtg atgcaatggg
     9181 tactgtgcgt gatgtggtag agccaaatgg tggtgtgatt gttggtcatt ggccaactgc
     9241 cggttacact ttcgaggttt ctcaggcctt agttgatgat gatacttttg tcggcttatg
     9301 tattgatgaa gatcgtcagc ctgaattaac cactgaacgt gttaataaat ggtgcgagca
     9361 gttgaaagaa gaaatgtgct tagaccaact cgcataataa ctattttgga taaagataaa
     9421 taagtggcat atatgtctga agcaaatatt aaacgtttaa aagaggtagg cttaaaagta
     9481 accgagcctc gtttgactat ccttgcatta atgcaagata ttcgtgatga aatgcaacat
     9541 tttgcagcag aagatattta taagattctg ttagaaaaag gctcagacat tggtttagca
     9601 acggtttatc gtgtcttaaa ccaatttgaa gaagccggca ttttaacccg ccataatttc
     9661 gatgcgaata aagcagtatt cgaattaaat atgaaccacg aacacgacca tattatttgt
     9721 atggattgtg gtaaggtgtt cgaatttaaa gatcctgata tggagcgtcg ccaacgtgaa
     9781 atcagtgaaa aacacggaat ggaattgact aaccacagtt tatatctgta tggtaaatgc
     9841 agtaatttaa ccaactgtga tgagaaaaaa taatatttct tattttgact tatttctatt
     9901 accgaagtcc ctttgggtct tcggtattgt tctatatagg tttccctaat ttaaaatgac
     9961 gatggaagaa aatacccaca ctgttgtaga tgcccaaatc cggcagcctc gcaaaatttc
    10021 tcctttttgg ctgttaccaa tagttgcttt tattattggt gctttgctat ttttccaaat
    10081 tttaaaagag caaggtgaaa caatcacgat tcgatttagt aaaggtgatg gcattactgc
    10141 cggaaaaacc gctattcgtt accaaggctt gcagattggt caggttaagc gtgtttattt
    10201 tgtcgataat ttaaaagaag tggaagtgca agcagaaata aaccctgaag ccaaaagtat
    10261 tttacgcaaa cagactaaat tttggttagt gcaaccaagt gcttctttgg ctggcgtttc
    10321 aggcttagat gcgattgttt ctggtaacta tattacccta cttcccggtg aaggcgattt
    10381 cgttgatgaa tttattgcag aagaagatcc tccggctatt accgtgagcg atggcgattt
    10441 actgatccgt ttaatctctg atgacatagg ctctattact gtcggagcga gtgtttattt
    10501 ccgtaaagtg ccagtgggta atattgccga ttatcgtttt accaaagacc agaaaaaaat
    10561 cgaaattgat gtcgtcatta atcaaaaata cgctcattta gtaaaaaaag agagccgatt
    10621 ttggaatatt agcggtatta gcgctgatgt aaatttacaa ggtattaaaa tcaatatgga
    10681 cagccttgcc tcggtagtac aaggtgcggt tgcttttgat tcgcctgata atatggaaat
    10741 tgccgagcaa ggacagaaat ttgagctata tccggatttg aaatcagcta aacgtggaat
    10801 tgaaatcaac gtaaaactac cgcttacaca taatttaaaa attaatgaga ctggtgtttt
    10861 tcaccaaaat gtgcaaattg gtatgctttc gcagctaaaa ttaccgcaag taaaagacaa
    10921 cggtgtgcca cagcaagaat cagggcagca taaacagatt gatggggttt tattaattga
    10981 cccaagttat gaaaatttac tacgttccca aactaaaatc ttgctcaaag agccgaaatt
    11041 ctccttaaac acagagcagc tgacgaaagt aggtgagctg ctgcgtggtg tctattttga
    11101 ggttcacccg ggggaaggag aacctcaatc ggaatttgtg gtacaaaacg aagccgatta
    11161 tctattaagt ttaccgaatt tacttagctt tagcttaatt gctcctcaag cctatggggt
    11221 agataccaat caggggattt actatagcga tgtgcaaatc ggagaaatcg tcaaacgtag
    11281 cctagagtta gacaaagtac gttttgatgt cattatttat ccgccttatc gcaacctgat
    11341 tgggagtaac agcaaatttg ttgcgatatc caacattgat atgtcggtgg ggctagatgg
    11401 gttaagagtt cacgccggtt caccatctga atggttaaaa ggcggtgttc gcttaattaa
    11461 cggtaaaaat gacggtagcc cgaaaaaaca atatgcactt tataaagata tagaaagtgc
    11521 ggaatcaggc atggctacct tagataaaaa agccaccact accctttcgg cagattcatt
    11581 atctggtatc agcgaaggct ctttggtgct atatcgtgat tttcaggtcg gcgaggtgtt
    11641 aaaaataacc ccgaaacaac aaaaatttga ggttgagcta tttatccagc caaattatcg
    11701 tcatctatta accgagaaaa gccgtttctg gattgagccg gcaacgagtg ttgatgtgtc
    11761 actcaaaggc gtgaatatca ctacagctcc attaatgcgt accttaaaag gggcgatcag
    11821 ctttgatgat ggcggttcaa aaggcaataa aacgctttat gcaagtaagg agaaagccac
    11881 ttcgggcaat acttatctca cgctgattgc aaaagatgcg agtaagttaa gcgaaggaat
    11941 ggacattaaa tatatgggct taaccgtagg tcaaattgaa aaacttgagc tacaaaatgc
    12001 aaaaaaacag ataaaagcga ccgcttacat tcaaaggaaa tactatccgt taattgcaaa
    12061 agccggcagt aaatttaatg ttatctcgcc tgaaatcagt acctccggct ttaaaaattt
    12121 agatgcagca ctacaaaatt acattacggt tgatgtcggt tcagggcaag ctcaaaacca
    12181 atttgttctt gcagataccg atacggtaaa aaccacctat gccaacggtt tccccattat
    12241 tgtcgaaacc accaatgcta acggtattca gccggaagca ccggtgcttt accgtggaat
    12301 gcaggtggga atagtcagcc gtttagggct aagtgagtta ggcgatcgag tgcttattta
    12361 tgtcaatatt caagataaat acaagcactt agtcagaacc aatacccaat tctggcaagc
    12421 ttcaggttac actatggacg tgagcctgca aggtgtaagt atgaactccg gcacaatgtc
    12481 gcagttatta aatggcggta ttgagttctc taccccttac actaaagtgg tgaagcctca
    12541 agcccagcca aacagacgat ttttcttaca gcgcaaacta cctgatgaag ccccggcttg
    12601 ggatcaagga attgcggaat aatattgatg gagtaaaaaa tgcctttatt agatagtttt
    12661 aaagtagatc acaccaaaat gaacgcacca gccgtgcgtg ttgcaaaaac aatgaccaca
    12721 ccgaaaggcg ataccattac cgtgttcgat ctccgtttct gtcgtccgaa tattgatatt
    12781 ctaccggtgc gtgggattca cacgatggaa catctttttg ccggttttat gcgtgatcac
    12841 ctcaatagcg aacaagtgga gatcattgat atttcaccaa tgggttgtcg taccggtttt
    12901 tatatgtcac tgattggatc gccttcagca gaagaagttg tcaaagcttg gacggcatca
    12961 atggaagatg cgttacataa aattcctgat gtatcggcaa tccctgagct gaatgaatat
    13021 caatgtggct cttacaaaga gcattcttta aaagaagcac atcaaattgc ccgcaacgta
    13081 ttagctgccg gcattggtat aaatcgcaac gaagatttag ccttagacga aaaattactt
    13141 aatccataat tttttcacat tttttcgggg gcaaatggct atttgcccct gcatttttat
    13201 tcggaaatca caaatttatg tttgaaaaac tgtttaaatg gtttgaggca agggtggaaa
    13261 cctatccaaa tgaaatgccg aaaactccaa aatcaggtct cattcctttt atttacgatg
    13321 ccactaaagg aatgcggttt tatatcttac tactgaccgt attagttgca gctgtcggta
    13381 ttatcgaagc ggttctgttt cgctttatgg gcgatttagt cgattgggtc aataaatact
    13441 cgccaacaga actttgggca gaaaaaggct ggacgattat cggtatgttt tttattgccc
    13501 tacttgcagt ggtgtttgtt taccttgcca gcagcattcg ctttcaatct ctgcaagggg
    13561 tatttccaat gcgtttgcgt tggaacttcc accgcttaat gcttgggcaa agtttaggtt
    13621 tctatcaaga cgaatttgca ggaagagtgt ctgcaaaagt aatgcaaacc gccctttccg
    13681 tgcgtgatgt gattatgact tgtgccgata tgttggtgta tgtgctggtt tacttcacca
    13741 cctccagcgt gattttatta caacttgacg gctggttatt cgtgccgttt attttatggg
    13801 tcatctcatt agcggcaacc attatctact ttgtcccgaa attagcccaa gctgctcaag
    13861 agcaatcgga tgccagaagt ttaatgaccg gtcgaattac cgatgcttac gctaacattg
    13921 ccaccgtcaa actcttctcg cacggcaacc gtgaatctgc ctatgcgaaa gagtcgatgg
    13981 aaggatttat ggtgacagtg cataaacaga tgcgtttagt gactgtaatt gaaaccgtaa
    14041 ctaatctaac ctcgatggca ttaataattt caactgcggg tatcggttta tggctttggg
    14101 gttcaagcgt agtaactgca ggggcgattg ccacctcaac cgctttggct ttacgcatta
    14161 aaggcttatc acaatggatt atgtgggaat ttgctcgtct atttgaaaat ttaggtacgg
    14221 tacaagacgg tatgattacg ctttccaaac cacacaatgt ggtagataaa atcgatgcga
    14281 aaccgttaaa tgtaaccaaa ggcgaaatta aatttgagaa tgtggatttt gcctacgatc
    14341 cgaaaaaacc gctactgaaa gattttgacc tcactataaa accgggggaa aaagtcggct
    14401 tagtcgggcg tagtggtgca ggtaaatcaa cgctcaccaa tttattattg cgtttttacg
    14461 atattcaaga cggttcaatc acgattgacg ggcaaaatat ccgtgatatt acccaagaaa
    14521 gccttcgctc acaaattggt ttagtaactc aagacacctc gctgttacac cgctctgtgc
    14581 gtgaaaactt gatgtacggt cgcccaaacg ccactgaaga agagatgatc aaagccgttg
    14641 aacaagctgc cgccagtgaa tttattccaa acctgcaaga tgccaaaggc agaaccggtt
    14701 ttgatgcaca cgttggcgaa cgaggggtaa aactttccgg cggacaacgc caacggattg
    14761 cgattgcccg agtgatgcta aaagacgctc cgattttatt actcgatgag gcaaccagtg
    14821 cgttagactc tgaagtagaa gtggcaattc aagaaaatct cacgcaatta atggaaggta
    14881 aaaccgtggt tgcgattgcc caccgcctct ctaccattat ggcaatggac agacttatcg
    14941 tgttagataa aggcgaaatc gttgaacaag gcacgcacga agaattgctt gctcaaaacg
    15001 gtgtttacgc cagactttgg gctcaccaaa gcggtgggtt cttgccggag aatacggata
    15061 tttaatcaac tccatcacac atcatactaa gcaagcggtc attttttgtt agcaatttgc
    15121 aagatttcaa caaaaaacga ccgcttgttc gccaattaaa atcgcttcca agcccccata
    15181 aaatctctca aaaatttgca agatttctcc ccttttttca ggtatcatta tgacctttaa
    15241 taacaataat tttggagcaa attgtgtctt ccctttggtc tgattgcctt aatcacttac
    15301 aaacgaaagt ctcaccaact gattacagca cttggctgcg tcctctgcaa gcgagttctg
    15361 agaatgggga acttacactt tatgcacaaa atcaatttgt tgaaaactgg gtaaaagata
    15421 aatttttatc ggaaattacc gagcttgccc gttttttggc gaaaaatgat aatttggtgg
    15481 ttacgttaaa agttgggatt aaaccgacag aacagccaaa ggtcagccca aatctaaaaa
    15541 acgagagttc agaattcagc aataccggct ttaaaaccgg gctaaatcca aatcaaacct
    15601 ttgataattt tgtacaaggt cgctcaaacc aattagctaa attagtggct caacaagtgg
    15661 tggataattt aggcgaaagc cattgcaacc cactctcgtt ttatgccggc accggtttgg
    15721 gcaaaaccca cttattacac gctatcggca atgaattagt taaacgcaca ccgggtactc
    15781 gggtgctata tattcatttg gaacgttttt atcgtgatat tattaaggcg atcaacagtt
    15841 ccaataacga tgcggaaaaa atcaaaaaat tctaccgctc gcttgatgtg ttaatgattg
    15901 acgatattca atttcttgcc aataaaccga aagtacaaga agagttttta catctactca
    15961 atgctttatt tgagcagaga aagcagatta ttctaacctc tgacgttttg ccaaaaaata
    16021 tcgataaaat tgacacagcg attaaatccc gtttaagcgg cggtattagt gcgaccattg
    16081 agccacctga attggaaacc cgagtggcaa ttcttcgcca aaaagcctta gaacgtggag
    16141 cagatttgca agaagatgcc gcctatttaa tggggcaaaa actccgaacc aatgtgcgtg
    16201 aattggaggg agcattaaac cgtgtgattg cgtggcaaaa attgaccctt cgcccgatta
    16261 cggttgatgc ggtgcgtgaa accttgcaag atctgtttgc ctcttttgat tacttgatta
    16321 cgattgaaaa tattcaacgc attgtggccg aatattacgg cataaaagtt gccgatatta
    16381 aatcgaaaag tcgggcaaga agcattgccc gtcctcgcca aatggcaatg gcactggcaa
    16441 aagagctaac caaccacagc ttgccggaaa ttggtcggga atttggcggt cgggatcata
    16501 ctaccgtgat gcacgcctgc aaaaccatta atgaattacg cgataccgaa agcggtatcc
    16561 aagaagatta tatccattta acacgcaaat tatcatctta gcccgatgaa ggaatgatta
    16621 tgcaaattac cattaccaga gaacaattac ttaagccttt acaacaggtg tgtggcgtat
    16681 taagtagccg tccgactttg cctgttatta acaatctttt attagaaatt gaaggtaatc
    16741 gtctatcttt aaccggtacc gatttagaag tggaattaac cacccaagca caactgctac
    16801 aagcggtcga ttttgccgga aaatttacca ttccagctaa aaaattccta gatatcagta
    16861 aaagcctacc tgatgacagc gtgatttcgg tacaatttga agaagataaa gccattatca
    16921 aagcaggacg tagtaaattt agtttagcta cattaccggc aagtgattac ccgaatttga
    16981 tggattggaa accggaagtg gatttctcga ttgatcaatc tacccttgcc cgtctgattg
    17041 atgccaccca attctcaatg gcaaaccaag acgcccgtta tttcttaaac ggaatgaaat
    17101 ttgaaaccga aggcaattta ttacgcaccg ttgccacaga tgggcaccgt ttagcggttt
    17161 gcacaatggt gctaaatcaa gagcttttga ctcattcggt tatcgtgcca cgcaaagccg
    17221 tacttgagct ttcccgcttg gttgccagca acgatgaaac cgtgcgtttg gaaatcggtt
    17281 caagcaatat ccgtattaca atgaacggca ttgtatttac ctctaaactg attgatggca
    17341 gattcccgga ttaccgccga gttctgcctc gcaatgcaga tcgcattcta gaagcggaaa
    17401 ccgaaaccct taaacgggca ttaatgcgtg cagcgattct ttctaatgag aaatttagag
    17461 gggtgcgttt aaccttaagc aataatttac tcaaaattac cgcaaacaat ccggagcaag
    17521 aagaggcgga agagatcatt gatgttgcct acgacagccc ggaaatggaa gtcggcttta
    17581 acgttagcta tgtattagat gtgttaaaca ccttaaaatg ccaacgtgtg cgttttagct
    17641 tagttgattc aagttctagt tgcttaattg aagattgcga caacagctct gccgaatatg
    17701 tgattatgcc aatgcgttta taattcacag caacactaaa ccaacaaaaa agcctgattg
    17761 attttatttc aatcaggctt tgtttttata agttattcaa acgtacatca attaaggttt
    17821 gttcctgagg atttgcggtc gttttagctt gctcataagc acttttcgcc gcaggaatat
    17881 cgccttttgc tgcaagaata tcgcctgtta gaatttgctt acgcaattcc cacgctttat
    17941 cttgaatttg agccagactt gccagtgctt catcgtaaga ttttagttgg aagtcaattt
    18001 gagccaaacg aaaacgagcg atagattgta aggttgaatc cgaataagtc aaaactgact
    18061 gtaacgctgt ttttgccgca gaaaaattcc ctttttcgac cgcttgttta gctacttcaa
    18121 attgggcaaa agcggcatag cttgaatctt tattatcggc aataaatttc tcaacaagcg
    18181 gttgattttt gcttggattt tgcaaataac tctccatcac gctttggtat gaagcggatg
    18241 ttttttgtgc cgtttcaagc tggtgatttt tccaaaaatt ccagccggca gttgccgcac
    18301 aagctaaaat aatcgccacc aaaatcggtg tcccgttctc tttaaaccaa tttttggcat
    18361 cttcaaattg ctgctcttcg gttttattta aatattcgtt actcatcttt ttctcctaaa
    18421 atcgtttaga tagctcagca atcagctctg attgagcaat cgtgatttgt tctgctcctg
    18481 aacgtaaatc tttgataaca acttgctttt cagccacttc gctttcgcca atcactaacg
    18541 caatttgcgc ttctacttta tctgcacgct taaattgttt ttggaattta ccgccggaac
    18601 agtgtgtcat tacgccaacg tgtggcaatt cgctacgaat ctgctctgca agttggaagg
    18661 catttagtgt tgccccttca ccggagaata cgatatacac atccaccgtt tttggtaaat
    18721 caatctcttt attcacctct tgtaccaaca gcactaaacg ctctaagccc attgcaaagc
    18781 caacgccttg ggttgcgtgt ccaccgagtt gttcgactaa gccgtcataa cgcccaccgc
    18841 cacatacggt gccttgtgag cctaaggctg aagtgaccca ttcaaacacg gttttattgt
    18901 aatagtctaa accacgcacc aattttggat tgacttcgta acggattccc attgcatcaa
    18961 gtaaggcaca aagttgggta aaatgttcac ggctgtcatc atctaaataa tcgagcagtt
    19021 ttggggcatc gtttaataca ttttgtagtg cttcgttttt ggtatctaaa atccgtagcg
    19081 ggtttttcac caaacgctct ttctcttctt cgttcattaa agcggtgtga ttttctaaaa
    19141 attttactaa tgctgagcga taatttgcac gagcttctaa cgagccgata gagttaagtt
    19201 gcaaagaaac atgttgatcg atgcctaact ctttccatag gcgtgcggtg agaataatca
    19261 actccgcatc aatttccgga tttgcaatgc caaacacttc aacaccggct tggtggaatt
    19321 ggcggtaacg ccctttctgt ggacgttcgt ggcggaacat cggccccata taccataagc
    19381 gttgctcatt attgtagatc caaccacgct caatcgctgc acgcacacaa ccggctgtac
    19441 cttccgggcg gagcgttaat tgctcatcgt tatcccagaa cgtgtacatc tctttcgaca
    19501 ccacatcggt tacttcgcca atggcacggg caaataacgg agtgctttct acaatcggca
    19561 tacgtacttc cgaatagccg taacttgcca gcacattacg cactttctgt tcaacccatt
    19621 gccataatgg agactcactt ggtgagcagt cgttcattcc tcgaattgct tgaattgttt
    19681 ttgccactat atttatccta tttgttcaat atctatacga ttatgttgtt gtgcaactct
    19741 ggcacgaatt ttagcttcta attggtcgat taattttgcg ttgtcaaaac gctctttttg
    19801 acgaacgcca tctaaataaa agccgctcat tttattgctg ccggttaccc ctaaatcaga
    19861 caccaacgcc tctcctggac cgtttaccac acagccgata atcgaaacgt ccatcggcgt
    19921 gataatgtct tctaaacgtt gttctagctc gtttaccgtc gcaatcacat caatttcttg
    19981 gcgggagcag gttgggcaag caataaagtt gatcccacga gagcgaatac gcagcgattt
    20041 caaaatatca aaaccgactt tcacctcttc aacaggatca gccgctaatg acacacgcaa
    20101 ggtatcacca atcccttccg ctagcaacag acctaagcct accgccgatt tcaccgaacc
    20161 ggctctcgct ccgcctgctt cagtaatacc taaatgcagg ggctgatcaa tctgttttgc
    20221 aagaagtcgg taagattcaa ccgctagaaa tacatctgag gctttcacgc tgactttgaa
    20281 ttgatcaaag ttaaggcgat ctaagtgatc aacgtggcgt aatgccgatt ctaataatgc
    20341 ctgtggtgtc ggctcgccat atttttcctg caaatcacgc tctaatgatc cggcatttac
    20401 cccgattcgg atcggaatgt ttttatctct ggcacaatct accaccgtgc ggatccgctc
    20461 ttcattcccg atattacccg ggttaatccg caagcaatcc accccatatt cggcaacttt
    20521 caacgcaatg cggtaatcga agtggatatc cgccaccaat ggcacactca cttgttgttt
    20581 aatcgcttta aatgcctcag cagcgtccat tgtcggcaca gacacacgca caatatcagc
    20641 cccgacccgt tccagcgatt taatttgagc aacggtggct tccacatcgg ttgtgcgggt
    20701 gttggtcatt gactgaaccg taatcggtgc atcgccgcct acaggcacat tacccacata
    20761 gattttcttc gatacccgac gtttaatagg tgattgatgt atcatatttt tagctaattg
    20821 tgaaaattta taaaaacaga aaacgctcgt aaagacagct atcgttaaat gctagcttta
    20881 cgtgcgtttc atcgttaaat caagcttact gtaacggtaa atgaatacga gctacacgcc
    20941 catcaatttt caatggtact tcttgacctt tatagtacac ttttacattg gcaggcgcac
    21001 caatggttaa acgatattgc tcattctcat tgaaacttaa agtctcacca ttgttatata
    21061 atttttctgc taaacgttta tttttagcac cccgcactgt aatccagctt tgtgaaccgg
    21121 taatttcgat acgaagctca tcattcgtta ccgcaacagg ctgttctgta ggggcttgtt
    21181 ccgattgaga ttgctgtaaa acattaactg cctcaacctg tgcagtggtg gcatcagctt
    21241 gtttaacttc ttctaccact ttaacatctt cttgtgttac aggtgatgat gctgcttgtg
    21301 taggctctac tttttcagtt aatgccggtt ctgctgcaac taccgtttct gctacttgag
    21361 caggctgctc tgaaacctga ataggttgct gaacaggcac ggaagtttgt gctgaagcat
    21421 cattatttgt agcggtattc gccacttcag caactggtgc agagctaaca aattgctcgc
    21481 gattttcctg ttctttttga tacccttgcc accaccaaag taatgtcatt cctaatgccg
    21541 caagcaatac taataccgtt aaatacttta aggttttacc ttgtgaattt gatgaaggtt
    21601 ttactgaaga aactttagtg acttcttttg gaatagtgac ttcaccataa ttaacgctcg
    21661 aaataaggga ttcaggtaaa cgcaaaaatt tcacataatt acgcacatag ccacgcacaa
    21721 aagttggggc aacattttgt agaataaaga tatcattttc aagtgattca atatgtgatt
    21781 tttttaagtt ggttttttga gcaacatctg taatagagag atttaacgct tcacgagccg
    21841 cttttaattg ttgccctaaa gaaagtgctg taccagcttg agtagaatta actgattccg
    21901 tcatataaaa ctctttaaag aaagtagtag aaataaaatt caaaaattat tcggaagttt
    21961 aaagaggtaa tgcctatttt gcaatcttaa tgcgtaaaaa attgaaaatt taatcggcaa
    22021 gcggtcatat ttttcaattt ttttgcaaaa tatgaccgct tgtatccggt tttactttga
    22081 agctaaattg gctttggcta ccgcaatcgc ctctgccaca cgttgtgggt tcactccacc
    22141 tttggcacaa cgtttttcta agcaagattc taacgagaga attgggtaaa catcatcgcc
    22201 aatcgaatga tggaattgct ggaattcgtt aatgcttaat gcttcaagtg gctctttttt
    22261 gctgattgcg taaaccaccg cttcgccaac aatatgatga gcttcacgga atggcacgcc
    22321 tttcgccact aaataatctg ccaactcggt cgcattcgca taaccttgct gagcggcttc
    22381 tcgggtgcgt tcggtattca cttgaatatc aaccagtaca agttctgcaa tttctaaaca
    22441 agcctgccaa gtttccaacg catcaaaaat accctctttg tcctcttgca tatctttatt
    22501 ataagcaagt ggtaaccctt tgagtgtagt taataaaccg tttaatgccc caaatacccg
    22561 accggatttc ccacgaatca gctcacaagc atcagggttt ttcttctgtg gcataagtga
    22621 tgagcctgag gtcacacgat ccgacatttc aaggaagcct gattcgccac tattaaaaat
    22681 gattaaatct tcagcaaagc gagagaggtg catcatactg atcgaggcag tagagagcag
    22741 ctctaaaata tggtcacgat ctgacacgct gtctaaactg ttgcgtgtgg cttcttcaaa
    22801 gcctaaatca cgggctaata agtcacgatc aatgccgtaa gccgtaccag ccaatgcccc
    22861 tgaaccaagc gggcaagtgc tcatacgttt attagcatca ctcaaacggc tgaaatcccg
    22921 ttctagcatt tcataatacg ccatacacca atgagcgaag gtcacaggct gagctcgttg
    22981 taaatgggta tagcccggca tcaccgactc ttgattttct tcggcaacgg aaaccaaacg
    23041 ctcttgcaaa gctcggattc tttcttgcaa tgccaccgct tgcaccttgc accacatttt
    23101 aatatccacc gctacttggt cattacggct acgcccggtg tgcaattttt tacctaaatc
    23161 gcccactttt tcaatcagct tagattcaac ccagctgtga atgtcttccg catcatcttt
    23221 taagatgatg gtaaggttag attctacctc tgctctcacc tcttttaatg ctgcgattag
    23281 ttgttctaat tctgctaccg ttaaaatacc taccgaagta atggcttttg cccagccgat
    23341 tgagccttca atatcttgaa tcgccaagcg gtaatcaaaa cgtaatgaat cgttaaaata
    23401 tttaaatttt gcgtctgctt gttgtgtaaa gcgtccaccc caaagtgcca cagtctgttc
    23461 cttgtatatt attctttgta tcgatcaaaa tgaaaaaggc gttttaccgc cttaactttt
    23521 cgcttatttt gcataaatat gcaaaatatt tcaatattta tttataacta ttttaattgt
    23581 gactcaataa tgccaccgcc taagcaaact tcacctaagt aaaacacggc agactgcccc
    23641 ggcgtcacgg caatttgcgg ttcatcaaac atcactcgaa tggtttcatc atcaatcact
    23701 tggatttcac acgcaatatc tgcttgacga taacgggttt ttaccgtgca gcgtaaattt
    23761 tcacgcaacg gctgcatatc cacccaagtg agctgtttcg caattaagcc acttgaaagc
    23821 agggctgaat tatcgtgtcc ttgtgccaca atcaatacat tgttaattaa gtctttctcc
    23881 accacataaa acggatcttc acttagccct ttcaccccac cgatacccaa gcctttgcgt
    23941 tgcccaagcg tgtgatacat cagcccatca tggcgaccga ctaatttgcc ctcaacggtg
    24001 cggatttccc ccggttgagc cggtagaaaa cgagctaaga aatctttaaa tttacgctca
    24061 ccgataaaac aaatgccggt agaatctttt ttctttgcgg ttgctaatcc taggtcttcg
    24121 gcaatggctc gcacaatcgg cttctcaatt tcacccactg ggaataaact ctgcccgatc
    24181 tgctttttat ttaacgcata taaaaagtaa ctctgatctt tgttttcatc taagccacgc
    24241 aaaagtttcg catcttgatc atcgctcgta cggcggacgt aatgcccggt cgcaatataa
    24301 tccgcaccaa gatcttctgc cgcatattcc aaaaaggctt taaatttgat ctctttatta
    24361 cacaaaatat ccggatttgg cgttcttcct gccttgtatt ctgccaagaa atattcaaat
    24421 acattatccc aatattccgc tgcaaaatta attttatgca gtttcatacc cagtttatcg
    24481 gcaaccgctt gagcatcggc aagctcggcg gcggcggtac aataatccgt atcatcatct
    24541 tcttcccagt ttttcataaa caagccttcc acttggtagc cctgctgttg aagaataaaa
    24601 gcggaaaccg aggaatccac cccaccggac ataccgataa tgactttttt cttgctgttt
    24661 tcagcaagtt gttctggggt taatttaggg aaatgagtgt cgtaggtttt tgaggttaat
    24721 tgagttgtca taaatctccc gtaacttcgg ttaaggcgaa gcacattggt taataataaa
    24781 aacaacaagc ggtgaaattt gcaaaaaatt ttgcaaaatg aaccgcttgc ctattaagaa
    24841 attagagttc tctttggtaa aagacttttc ctactctatc aatatgttca ataaagttgg
    24901 cattggttaa ttgatgataa atcgacaagt caaataaata gggcgagtcg gaatcgtcta
    24961 aatcacccca aatgcgtttg acaatatcgt aagtaagatc ttttccttta aaagtaagat
    25021 ctacatctga gccttcacga taattacctt tagcacgcga gccgtaaata atggcttgct
    25081 ccacttcagg gtatttcgca agaatatcgg taatagtttt cgtcgctcgt tcgcttagtc
    25141 caaagtttgg catagtgttt ctactcgctg ttcaaattca ataaataaag gcagatacgc
    25201 cttgataatt ttattaaatt cttcagttaa aatagtttca tcgtcagtat gaactgttat
    25261 attgcggctt tttatcattt ctagccaaac ttcgccctga gtgattagcc cacgattaaa
    25321 agccaaacga gaagccgttt ttgaaccata aatatcaact tcaccttccc attttaaaat
    25381 atcttgcatt aacttccacg ctaactcgtg tgtaatctca aaactctgga taattccttt
    25441 tttaattaca tcaatgtcgg tatcagcgta tttttctgct tctgcttgaa ggtaacttac
    25501 tgatttttta tagttatcaa accgctgttt ccagcgaata tctctattca tattatttca
    25561 cttcataaaa ttgtggctct ttattaaaac gtgccacttc ttcagggtcg gctgtgccgt
    25621 ctgcgatttt agattttagg ttatcgcaag gttcttcgca gtcgcacatt tttttcatac
    25681 ctaaagcggt gataccgcca cagctgcctt tgatggtttt gcctttcacg ataaaaccaa
    25741 tcgacatcgc aaaaattacg gctacaaaaa agccaaaggt taataataca gtttccattt
    25801 ttcactccaa ctattgtgat tgaataagtt tgctaaattc gctcgacatt tgtgtctcaa
    25861 atttatcgcc gtttttaaca attaaaaaaa tagctaattt ttcacgctct gccactgcta
    25921 atgctttttc cgctcctaaa acaaataaac cggttgataa gccgtctgcc gtcattgtag
    25981 ttggggcaaa tacggtgata gaggctaaat tatggtttac cggacgtaac tgttttgggt
    26041 cgataatatg tgaaagacgg ttgccttttt catcttcaaa ataattacga taattgcccg
    26101 aagttgccat cgccaaattg tgcaacggca cggtaatttg tgcggcttga ccttgtgtca
    26161 ttaccggctt ctcgattgca atccgccaat ctaagccttg taaatttttt cctttgcctc
    26221 gtaattcgcc accaatttca actaaatagt tgctcacacc tatagtttca agatgctcgg
    26281 ctaatttatc tacaccgaaa ccctttgcaa tagacgataa atctagataa agattagctg
    26341 ctgacttggt gagcttgggt ttactactca tttcaagcaa aattttatca atgccgacat
    26401 aagcagaacg ctctgcaatt tgttcatcag acggcacttt atttaagcgt ttatccggcc
    26461 cgaagcccca caagttcacc aatggaccaa cggttacatc taaagcccct tcggttactt
    26521 tatttaaacg gattgcctct tgtaccactt ttgcaaaatc ctgcgaaatt tcgaccgctt
    26581 gatttgcctg ctttgcttga ttaaaacggc taatttccga atcttgttgg taggtggaca
    26641 tctgattatt cacctcaatc aataagccat ccagctcatt tttcattttt tcaggcgaaa
    26701 tcaaattctc cacttcacca ttatcaatat attttacggt gtaagtcgtt cccatggttt
    26761 tgcctgacag cgtaatttgc tcaggggctt tttcacaagc acttaaagta aaaaaagcaa
    26821 ttaaaagaag aaaaaatttt ttcattggtg tcacaaaagt taaaaattgg ggaaattata
    26881 gcatatttag cgattaaata agcacttcat atcgctgtaa aataatttgt ttaaacgatt
    26941 cgttgcaact tgcccagtca atcagatcta ctgtgaaagg taggtcagaa tccgtaaacg
    27001 caagctctaa ctctgtttgt tgccgaattg tgagcggttg tttggtgatt aatgctaaat
    27061 caagatccga ataggctttg gctgtgcctt taatgcgaga gccaaaaacc caaacgggtg
    27121 tatcaggcaa gtattttttg aaaatatcca acacctgttg gcgttgtgac tcagttaaat
    27181 caatcatagc tattgcgttt ttggagctgt ttaactaaaa aatacgtact ttccagaaag
    27241 tttgaaattc cgttataaac ctgctgtgct ttattttgat cataagtatg cgaagtaata
    27301 tttcgcattt tgcgataatc cagccaaact tccggtgatt caatcagccc atattgagca
    27361 gccattcgca aaatatcacg gaactcggtg ctatcaatat cagtgtcatt tgactcaatg
    27421 tttttgagct gacgcttgag catttttatc gacaattcgt aaacaaattc aaatttttgg
    27481 attgctcctg caatcaaagt gtcttgaata attgcttctt gccggttaaa ccacgcttga
    27541 ttctcaaggc tgacaatcgt tttctcaagg gaattgaagg cattttcaag taccgtaata
    27601 tccagttgtt ccatttgctt ccccttaaaa ttcacattat taaattacca aaacttaata
    27661 atataaatta aatcaagcgg tcaattttgc aaatttgacc gcttgtagtc agaagttaag
    27721 gtttatcaac caccaaagtc atctaataag atgttttcgt cttctacacc taaactcttc
    27781 agcataccga ttaccgcagc attcatcacc ggtggaccac acatatagta ttcgcagtct
    27841 tcaggtgctt cgtggttttt gaggtagttc tcataaagca cgttatgaat aaagccacgg
    27901 aagtaatctt ctctgtcgcc cggtaatgga tcagaaagtg ccacatacca tttgaagtta
    27961 tcgttttctg cttgaagacc atcaaaatct tccacataga acatttcacg ctcagaacga
    28021 gcaccatacc agaatgacat tttacgttta gattttaaac gttttaattg gtcgaagata
    28081 tgtgaacgca ttggtgccat acctgcacca ccaccgataa agaccatttc cgcatcggta
    28141 tctttagcga agaactcacc gaatggacct gaaattgtta ctttatcacc cggttttaat
    28201 gaccaaatgt aggaagacat ttgacccggc ggtacgtccg gattgcgtgg tggaggtgta
    28261 gcaatacgca cgttaagcat aataatgcct ttctcttccg gatatgaagc cattgagtat
    28321 gcacgaataa tatgctcgtc cacttttgaa gtataacgcc ataagtcaaa tttatcccag
    28381 tcttcgtggt actcttttgg aatatcgaag tctttataat gaacggtatg aggttcagct
    28441 tcaatttgga tataaccacc cgcacggaac ggtacttctt cgccttcagg aatttgaagt
    28501 ttaagctctt tgatgaaggt tgctttgtta tcgtttgaga taacggtaca ttcccatttt
    28561 ttcacaccaa agatctcttc cggaagttca acgtccattg aagatttcac gtttacctga
    28621 caagctaaac gccagccttc tttcgcttct ttcttagaaa tgtgcgataa ctcagttgga
    28681 agaatttcac caccgcctga tttcacttgt actttacatt gaccgcaaga gccaccgccc
    28741 ccacaagctg acgaaacgaa aatcccttta cttgctaaag caccgagtaa ttttccacca
    28801 gccggtagcg taatgccttt ttccggatcg ttgttgattg agatggtaat atcacctgaa
    28861 tcaactaatt ttgatttagc gaaaagaatg atcaccgcaa gcactaatac cagagccgta
    28921 aatgcgataa taccgaaaat aaaattacta tccacgatat gctccttata attgaatgcc
    28981 tgagaatgac ataaagccta acgccattaa gcctaccgta ataaaggtaa tacctaaacc
    29041 acgtaagcct gccggcacgt cggaatattt cattttctcg gttaaacctg caagggcaac
    29101 gatggctaac atccagcctg tacctgcacc tacgccataa accacagatt ctacaaagtt
    29161 atactcacgt tgtaccataa acgatacacc accaaaaatc gcacagttta cggtgataag
    29221 tggtaagaag atacctaatg cactataaag tgccgggaaa aacttgtcta aaatcatttc
    29281 cagaatttga acaagtgccg caataacccc gatgaaagtg ataaagttta agaagcttaa
    29341 atccacacct tctactaatg caccctcttt taatacgtgg gtataaacta attggttagc
    29401 tggaactgca atgccaagta ctacaattac cgcaatacct aaaccaaaag cagttgaaac
    29461 tttcttagac accgcaagga atgtacacat accaaggaag aaagaaagtg ccatattttc
    29521 aataaatatg gacttaacaa agatactcag aagatgttcc atcttatttc tccacttgtt
    29581 ccggtttcca cgttctaatc gcccagatca caaatccgat aataaagaac gcacttggtg
    29641 ctaataagaa taaaccgttt gcttgatacc aaccgccatt ttgaacagtt tcaagaatgg
    29701 tgataccgaa aattttacct gaaccgataa gttcacgtaa aaaggcaacg ataattaaca
    29761 ttgcaccgta gcctaaaccg ttaccgatac catcaacaaa actttcaacc gggcctgatt
    29821 tcatcgcgaa tgcttctgca cgccccatta cgatacagtt ggtaataata aggcctacga
    29881 ataccgataa ttgttttgac agatcgtaag cataagcgcg taagatttgg tcaaccaaaa
    29941 ttactaatga tgcaataatc gccatttgca caatgatacg gatactattt ggaatatagt
    30001 tacgaatcat tgaaatgaac atacttgaga atgcagtaac taaacttacc gcaatcgcca
    30061 ttactactgc tgtttgtaat tgagtcgtta ccgctaacgc agaacaaata cctaagatct
    30121 gtaatgcgat cgggttgtta tcgacaattg gcgataacaa taatttttta agattgttat
    30181 tgtctgccat tagttagctc ctgccgctgc tttaaatttt gctaaatatg gaccaaaacc
    30241 attttgacca aaccagtatt tgaatgaacc atcaacaccg ttcgaggtta atgttgcacc
    30301 agataaacca tcaacaccgt gatctttatc tgcagatgcc cctttaccca ctcttaacgc
    30361 aacttggttt tgctcgttat acagtttttt acctacaaag tttttctgcc agttcgggtt
    30421 tgcaatttcg ccacctaagc ctgccgtttc accttgttca tagtaagtaa taccgttaac
    30481 ggtatttgca tcaggttgta ccgcaacgaa accgtacata attgaccata agccgttacc
    30541 gtgcattggt aatactactt gagtcgtttt gccagattca tcttttacta aataaacttc
    30601 agcatattta gcacgcgttt tgatattcgc cttatcatct tcaggtgcga taactacatt
    30661 ttgagcagga tctttagctg ctgcacgagc atcaaaaccg gttacaccct caacgtaatc
    30721 acctgttgct aaatcgacaa ttttcggctc aataaatttg gtataggttt cttgcacatt
    30781 ggtatctttt tgcaataaac cggccgcttg taagatgttt ttctgtttat caagttgttt
    30841 ctgaatatct tgtgttggtt taagcattac tgccgcacct gccacaatca aagaacaaat
    30901 taaacttaat aaaactacaa cggttagcgt tccgccaacg ctatctttat taaatttagc
    30961 cattgtttgc taccctcgct aatctgcgtt tgatattccc ttgaactact aaatagtcaa
    31021 agattggagc aaataagtta gcaaataaga tcgctaacat cataccttca gggtatgctg
    31081 ggtttaccac acggattaat acacacataa agccgattaa gataccgtat gcccatttac
    31141 ctttgttggt aaatgcagct gataccgggt cggttgccat aaagaacata ccgatcgcaa
    31201 aaccgcctaa tactaaatgc caatgccaag gcatagagaa taatgggttg gtatcagaac
    31261 cgattacatt aaataatgtc gcagttgccg ccataccaat cattacaccg gcaataattc
    31321 gccaagaagc aattcgggca aatacaatga ttgcagcacc aataatcaac attaaggtag
    31381 aggtctcgcc gatagaaccc ggaatattac ctaagaacgc atccatccaa gtaatggttt
    31441 caccggttgc aacgtgctgt aatgcacctt gaccaccaac tgcccattga gaaagtgcag
    31501 ttgcacctga gaagccgtct gcggcaaccc atactgcatc acctgaaatt tgacccgggt
    31561 aagcaaagaa caagaaagca cgaccggcta acgcagggtt cataaagttt ttacccacgc
    31621 caccgaacac ttcttttgcg accacaacac caaaggtagt tgcaagggct gcttgccata
    31681 acggtaatgt tggaggaaca attaatgcta gtaagataga ggttacaaag aaaccttcgt
    31741 tgatctcgtg cttacgcacc attgcaaaca ccacttccca gaaaccgccc actgcaaata
    31801 ctgttaagta gattggtagg aaataggttg cccccagcaa cattttagtt ccccagcctg
    31861 catcagctac agagcctaaa ctatcggcta agctgtagtg ccagttgtta gcaactaaat
    31921 ccgttaatgt tcccattttg agtgccgcta gaataccctg tgcaccaaca ttgtacattc
    31981 cgtagaacat cgcagggaat aacgctaacc atacaattaa catcatacgc ttagagtcaa
    32041 tcgcatcacg cacgtgagca tctttacgag tgaccgtacc cggtgtatag aaaatcgtat
    32101 aggcagcttc aaatagcgtg taccatttct catactttcc acctttatgg aaagcgggtt
    32161 ccattttttc aaaaagattt ttcaaaccca tttttaaccg tccttctcga tcttatctaa
    32221 cgcttgacgt aataatggtc cccagttgtt tttaccggaa cacacaaaag tacataacgc
    32281 taaatcttct tcgtctaact ctaagcagcc taaagcttga gcggagtctg tatctccagc
    32341 tgctaaatca cgcaataaga gtgttggaat gatatccaac ggcattacac gctcataagc
    32401 ccctgttggt accattgcac gctcactacc gtgaactgct gttgtgaagt taaataattt
    32461 cttcgcaaaa tgccctaaag tagtacgcgt aattgaatac ttatcagagt aaggagcaat
    32521 cataccgaag aacgctttct cacgcccttc taataaagca gacacttgta atgcgtaacg
    32581 acctaaatag tcgtgtactc ccgttgcgat agcaccactt aacacagaac ctgaaatgac
    32641 acggttttca cccgcattta attcgttggc tgttaattgt gaaagattcg cccctaaacg
    32701 agtacgcacc aaacgtggat ttttcacttg tggcccggct aatgcgacta cacggtcagt
    32761 aaatagctca ccggtcgtaa ataatttacc gatagcaatt acatcttggt aatttaaata
    32821 ccaaacttgt ttagttgcac ctaccgggtc aataaagtga atatgcgtac cagaaagacc
    32881 tgcagggtgc ggacctttaa agcggttagt ttccacatta ttgatctgac ggctttgtgc
    32941 cgcatttaaa atatttgagt ctgcactgcc acagagatga atcacttttt tactttcaaa
    33001 taaacgactt aatacagtta agccatcaaa gaaagcttgt tggtgttctg caataatcac
    33061 ttccggattt gctgcaagtg gattggtatc catcgcattg acaaaaatag aggaaggttc
    33121 tgcatctaat gcaggcactt tgctaaacgg acgtgtacgg aaagccgtcc ataagcctga
    33181 ctctacaagg ttttgtttta cttgctctga agttaatgaa gctaattggc tggcttcata
    33241 acgagcaaag gtaatttgct catcaccctc aactttaatt actaccgatt gaagaacacg
    33301 cttctcgcca cggttaattg ccgttacggt accacttgca ggggcagtaa ataccacgcc
    33361 cggattcttt ttatcttcaa aaagaacctg acctttcttt actacatcgc cttcacgcac
    33421 tttcattgaa ggacgcatac ccacatattc ttcaccaagc atagcaactt cagtaacggt
    33481 attaccgtta tggattactt gctcaggttt tcccgcaatc ggaagatcta agcctttttt
    33541 gattgtaatc atattgtttg cactactttt cttttgggtt aaaaaatatg attgcgctaa
    33601 cgcaatcgct tctattgagc cgcagcttta cttaaaaata aacaatggtc ccccacctat
    33661 ttttaaaagc cacattaagt tctcaaatct gtgatcaacc tttatctttt cttaacaaaa
    33721 ggttaactaa aaataatctt cttattttac ctaaaaagct ccccttctgg ctaggaaaac
    33781 cccctatttt ttgcatattc ccgcggtaaa atttgaaata aatcaagatt tcaattccct
    33841 cttaacataa attaaccata attagttaat ccaatttccc ttcaagcggt taaattttat
    33901 taacaatttg caaaaatttt tttagctagg caattttgaa attcaggcgt aaaatagttg
    33961 ataaattttg taaaatatta aaaaacagga taatttaaat ggaagaacaa accattcata
    34021 tttcaatatc agatgcagca caagcccatt ttgccagact attagaacag caagaagagg
    34081 gaactaatat ccgtattttt gtggtcaatc ccggcacacc gggggcagaa tgcggtgtct
    34141 cttactgccc acccaatgca gttgaagaga cggataccga atttaaattt aaccgtttct
    34201 ctgcatttgt cgatgatatt agcttaccgt ttttagacga agcggaaatt gattatgtaa
    34261 ccgacccaat gggttcacaa cttaccctca aagcccctaa cgccaaaatg cgtaaagtgg
    34321 ctgatgatgc accgtttatc gagcgtttag attatgtgat tcaaacccaa gtcaatccac
    34381 aacttgccag ccacggcggt aaagtgacct taattgaaat caccgaagat aaatatgccg
    34441 tgctacaatt cggcggtggt tgtaacggtt gctcaatggt ggatgtgacc ttaaaagagg
    34501 gaattgagaa acagcttctg gcaatgttcc ctgatgaatt agttggtgtg aaagatatta
    34561 ccgaacacca acacggtgaa cattcttact attaaaaata ctaaaaggga taaatcattg
    34621 atttatccct ttcttataat taatgagcaa gcggtcaaat ttactcgctt tcgctcgcac
    34681 ttcgtgccat cagcaaagcc gatgttcaaa cgcaagcgtt tgtacaaaaa aatgagtaaa
    34741 ttcgaccgct tgttaagttt gattaagcct tacgactctc ttggtgatct ttcgcagctt
    34801 tcacaaaacc tgcaaataat ggatgaccat cacgcggagt tgaggtaaat tccggatgga
    34861 attgtgctgc tataaaccaa gggtgatttg gcacttcaat aatttccact aatttacgat
    34921 ctgccgataa accgctcact tttaagcctg ccgcttcaat ttgtggtaac agcttattgt
    34981 ttacttcgta acggtggcga tgacgttcaa caatcgtttc cgcaccatat aactcacgag
    35041 cttttgagcc ttcaattaaa tggcattgtt gtgagcctaa acgcattgta ccacctaaat
    35101 ctgactcatc gctgcgggtt tccacattcc cttccgcatc ttgccattcg gtaattaagc
    35161 caatcaccgg ctgtgagcaa tctttatcaa attcagaaga atttgcctcg gttaaacctg
    35221 ccacattacg ggcatattca attagggcga tctgcatacc taaacagata cctaagtaag
    35281 gaatcttgtt ttcacgggca tattgtgcgg ttcgaatttt gccttccacg ccacgatagc
    35341 caaagccgcc cggcacaaga atgccgtcta agcctgccaa taactctgtg cctttggttt
    35401 caatatcttg tgaatcaatg tatttaatat tcactgttaa acgatgcgtt aaacctgcgt
    35461 gtttcaaagc ctcattcacc gatttatacg catcaggtaa ttccacatat tttccgacca
    35521 taccgatagt cacttcgccg gttgggtttg cttggcagta tagcacttgt tcccactctg
    35581 aaagatcggc ttctttgcaa tctaaacgga aacgatcgca cacaaaggaa tctaaccctt
    35641 gcgatttcaa taattccgga atgcgataaa tcgaatctac atctttaagc gaaataaccg
    35701 cacgctccgg cacattacag aaaagggcga tttttttctt ctcattttcc ggaatagcac
    35761 gatctgaacg gcaaattaac acatccggct gaataccgat tgaaagcaac tcttttactg
    35821 aatgctgagt cggcttagtt ttcacttccc ctgcggttgg aatataaggc actaaggtta
    35881 aatgcataaa caaggttttt tcacgaccga tatccaccgc taattggcgg agtgcttcta
    35941 agaatggcag tgattcaata tcccccaccg tgccacctac ttctacaatg gcgacatcac
    36001 gccctttacc gccttctaac acacgggctt taatctcgtt ggtaatatgc ggaataacct
    36061 gaatggttgc acctaaatag tcgccacggc gttctttacg caacacttca gagtaaattt
    36121 taccgctggt aaagttgttg gctttgctca tttttgaacg gataaaacgc tcgtagtgac
    36181 ctaaatccaa atcggtttcc gcaccgtctt cggtcacaaa tacctccccg tgctgagttg
    36241 gactcattgt acccggatcg acattgatat aaggatcaag cttcataatg gttacattta
    36301 aaccacgagc ttccagaata gatgctaaag aggctgccgc aatacccttc cctaaagaag
    36361 atacaacacc gcctgtgacg aaaatataat tcgttgtcat tgtgattgcc tttgctgatt
    36421 gattaggttg gaaattcaga atatcagttt acttcgtaaa aaagaaacta tcaggacggg
    36481 aaagtagttt acatcaaatt acattttttt gctaatggaa aatcggcaag cagtcagatt
    36541 aattcttttt tcaataatgc cgactaatct taattaatac actattattt gcgatagatc
    36601 agaattaacc tacatgttta tagatatcat aatacctgtt tttctaatac tggagacgat
    36661 acaatgaaaa tcaaaaaatt actactgcca actctgttaa gcattgctac tatgccaatt
    36721 caagcagccg acctacctaa tattacaatt cttgcaactg gagggacaat tgccggtagc
    36781 caaaaaaata cggcaacctc agcttatcaa gctgggcagc taaatattga aacactcata
    36841 gaagccgtcc cggatattaa aaaattagca aatatcaaag gagaacaaat cgttaaaatc
    36901 ggatctcagg atatgtctga tgaagtatgg ctaaaactgg caaaagcaat taatcaacaa
    36961 tgcccaaaca cagatggctt cgttattacg cacggcacag acactatgga ggaaaccgta
    37021 tacttccttg atatgactgt aaaatgcgaa aaacccgtag tattagtggg ggccatgcga
    37081 ccagcaactg aaaaaagtgc cgacggcgta ttaaatttat ataactcagt tgttgtcgcc
    37141 aaagattcta aatctagtgg cagaggggtg ttggttgcaa tgaatgatat tgtattgggc
    37201 gctcgcgatg ttacaaaaac cagtactaca tcagtgcaaa catttaactc accaaacttt
    37261 ggcgcactag gctatatcca taatagcaaa gttgattatg agcgctctcc tgaaagtaaa
    37321 cacaccgtaa acaccccttt caaagtagat gaattaacgg aattgccaaa agtcggcatt
    37381 atttatgctt attcaaatat gccaaccgaa ccgcttcaag cattattaga tgcgagttat
    37441 caaggcatcg tggttgcagg agttggcaat ggcaatatga atgcggctaa tttggcttta
    37501 cttgaagaag cagctaaaaa aggaattacc gtggttcgct cgtctcgagt gccaaccgga
    37561 tatactaccc gagatgcaga aattgatgat agcaagtatg gttttattgc ttccggcaca
    37621 ttaaatcctc aaaaagctcg agtattactg cagctcgcct taacacaaac aaatgatata
    37681 aaaactattc aacaatattt tgaagatttc taaaaagtaa ataacaagcg gtctattttg
    37741 caaaacaaat cacaaaatag accgcttgtc tcattactaa tctttattat tttacaaagc
    37801 tatcaaaagt tagctcataa ttgtcgccat cacgactata ggcgatatag cgagggaatt
    37861 tttcaccttc aaattttttc accgtaatgt cttttttatc actggttcta aacttgtagg
    37921 taatttcttg gtaggttttg ccgcctactt ttacctcttt ttgggctttg cgtagctgca
    37981 cattcggtgt tgggtaaagt tttttaccgt tagtagtttg aaaactgctc ggtaatttat
    38041 cgtaatagct caactgaaag gctgtggtga acaaatcata agttggcata gtcagcgctt
    38101 cttcttttag tggctctttc actttgccat attttaccgt tttagaatca atttctgcca
    38161 tcgcataagt tttgccgtta cgggtatctc ggtagctcaa catatgaaat tgttcgtttt
    38221 tttctgttcc cttcgcagaa aagacaatat tatataaagg cacattaatt tttgcctgaa
    38281 tattatattg gccaccaccg ttattaaagt taatgtaggc tggcattaaa taatttgagc
    38341 tgtatttcaa cttaaaattc tccgcactgg cgtttgaaat caagcccaaa gtgaccacga
    38401 ttacgctcgc taacttctgc caaattctca tctatttctc ctctaaagat atactttcga
    38461 acaaccttga aattgcattg ttatctcgta attgttccgc tttctccact tgtacccgtg
    38521 ttaaatgtgg cgaaaaataa ttaataaaat catacatata gttacgaaga aaagttcctc
    38581 gtttaaaggc gatttgcgtc atactcggtt gaaacaggtg acttgcattg atagcgacta
    38641 agtctttatc cgtttccgta tgtgccattg atgccataat accaacccct aagcctaagc
    38701 gtacataagt tttgattaca tcagcatctg tcgccgtaaa tacgatatta ggcaaaatac
    38761 cttccttatt gaaggcatga tctaaatccg attgccctgt aaaaccaaaa gtataggtta
    38821 tcaaatcata tctacctaat tgttcgacag tcaaattttt actttggttc acaaaagccg
    38881 caagaggatg ctctggtttg acaataactg aacgattcca ccaataacac ggcaataaaa
    38941 ccgcttcatc aaataaatat tgagcttctg tggtaatggc taaatccact tctccagcca
    39001 ccaaagcatc ataaatttga ttcggggagc cttggtgcaa atgcaaactt acttcaggat
    39061 agcgagcctt aaacttctca attacactcg gtagcatata acgggcttgg gtattggtgg
    39121 tcgcaatgcg taagatgcct ttgttgggtc gagtttgttc ttcagcaacc gatttaatgc
    39181 tctgggcttt taccaataat tcacgagcaa tcgccacaat tttttcacca gcaggcgtta
    39241 gccccttaac gtgcttaccg ttacgctcaa aaatattaat tcccaactca ctttccaaca
    39301 aacgaacttg tttgctaatc cccggttgag aagtgtaaag cacctctgcg gcctcggtaa
    39361 tattcaagtt ctggtttact atttcaacga tataacgtaa ctgttgtagc ttcataatga
    39421 tttcccctct acaatcgcaa taatctgttg catcgtatgc acttcgtaag ttggcttaat
    39481 atccgtatca ttctctttac taagcaaatt taaccaacaa gtatcaattc cagcattatt
    39541 acctcctaaa atatcagaag cgagggtatc gcctaccata agcactttag tacgatcaaa
    39601 ttcgtccatt aatgcaaaag cgtaatcaaa cacttggcga tcaggctttg cggcaccaat
    39661 ttgttctgat atcactacaa tatcaaaaaa atgtgaagtt tgagtattat ctaaacgttt
    39721 ttgctgcaaa tcggtaaaac cattggtgat aatgcccatt tttactttac catataaagc
    39781 atttaacata tccattacac cttctaaagg ctgactgacg aatgccatct ccgccattaa
    39841 ctcttgatta agttgtagcg gatctacgcc tgtttgagca gataatttta caaaacgtct
    39901 ggtttgaata tcttgagcag tgatctcatt attttggtaa gccacccaaa gtggtttatt
    39961 taccgcttga aagtcttgat aatcttgttc actaaaatca atttggtaac gagccagcat
    40021 cgcttttaaa ccaagataag aattaaatga aaacaaggtt tcatcagcat caaataatac
    40081 ccattgatat ttcataatat tcctttttta acttagataa caagcggtca aatttttcta
    40141 atttttcgca taccgctgat aaagccacgc ttaagcacaa cactctttca ttttttgctg
    40201 aatccactca acaaaaaatt gtactttctg aacttgggct gattgcgaag gatagacaac
    40261 atagaacgat ttttcatcaa acaatgtggt tgggaaaggc tctattaaag tacctttttc
    40321 aatttcgtgc tgtgccaaca actggttggc aatcgcaatg ccttgttggt gcattgcagc
    40381 ttgaagcacc ataaaagtat ggctaaaaat tgagccagtt tccgcatcta ctatatcttc
    40441 tatatgcaaa tgttcaacca ttcttttcca cttattatgg gtggaggaat gtaataaatg
    40501 cttacctgct aaatccgccg gtaaatgaat ggtattttgc gataaatact caggcgaagc
    40561 taaaataaca atacgggatt ccgtcaaacg gatagattcc agaccttgcc aatccccctt
    40621 accataataa atagcaacat ctgtttcttt acctaataat ccctcatctt gatcaacacc
    40681 cttaatacgt acttccactt ctggatattt ttcgtggaaa tccgccaaac gtgggactaa
    40741 ccaatgcata ccaaatgttt gtggtacgct aatagtcaga atttgacgac tactttgctg
    40801 cctaatttta tctgttgcga gagcaatttg ttctaataat ggctgaactt catagaaata
    40861 ttgtgcgcct aactcagtta attccagcaa acggttacgg cgatggaaca gggaagcacc
    40921 taaaaaatct tctaatagtt taatttggtg gctcactgca gcttgtgtga cgaagagatc
    40981 ttctgccgct ttagtaaaat ttaaatggcg tgcagcagat tcaaatgctt tcaatgcatt
    41041 gagtggtgga agttttttgt tcataatttt tcaatctaat agattactaa acaagcaact
    41101 ctattatttt ttctgatagt ttaaataaaa aaaattcgtt tgatgcttgc aaatagaaat
    41161 aataaaatat ccgcatactt agatggatag tttagaattt atttctattc ctaaatttta
    41221 agtatgatgt tgtgtttgca tattggtcta ggaaactaga ctagagtaac gaaagttact
    41281 tgtttcactt cctgtatatt ttgaaccgta ttggtttata accgcccact ttgggcggtt
    41341 tttttctatg taaaaaaaca gcacaaaacc tagatcgcat tctatattat tcgctacctt
    41401 tattctagcc tttctgcttt tttattcttt cactttaatc tattataaaa agaggtttta
    41461 tagtatgcta aagcctattt ttcatttgca ataattaccg agagttcttt tgagtaaacc
    41521 gaaattaacc cataaccaac agcgtagaat ccaatctaac catcataagc gtatcaacaa
    41581 aaaagagatt gaatggcaag atgaaatgtt aggagaaatg caacagggca tcgtcgttac
    41641 tcgccacgtt aaacacgctg atgttgaaac cgcagagggg caaattttcc gctgtaatat
    41701 ccgccgtaca ttgaaaaatg tagtggtggg cgatcaggtt tcttggcgta aaggtagtga
    41761 gcaactacaa gggattagtg gggtcattga agccgtcttc ccacgtaaaa atgaacttac
    41821 ccgccccgat tattatgacg gtattaaggt gatggcatcg aacatcgatc aaatcattat
    41881 tgtatcagct gtgctaccta cactttcgct gaatattatc gaccgttatt tagtgatttg
    41941 cgaaacggcg aatattcctg ccttaatcgt gctaaacaaa attgatttat taaacgaaag
    42001 cgaacggcaa gcagttaaag agcagctcaa aatctatgaa gagattggct atgaaaccct
    42061 atgtttatcg gctgatacgg gtgaaaatat gcaggcgtta caccaatatc ttgctaaagg
    42121 tacgtctatt tttgtcggac aatccggcgt ggggaaatcc agcctaatta accaactgtt
    42181 acctgaagtc aatgctctca ctggctcagt gagcgataac tcagggttag gtcagcacac
    42241 caccactgcc tctcgcttat accatttacc gcaaggcgga cagctgattg actcgccggg
    42301 cattcgagaa tttggcttat ggcatttaga acctgagcaa atcaccttag gctatcgaga
    42361 atttcaatcg gttttaggca cgtgcaaatt ccgtgattgc aaacacaaaa ccgacccggg
    42421 ttgtgcctta agacaagagg tcgaaaatgg cgaaatttct gcaattcggt ttgaaaatta
    42481 ccatcgctta attgaaagcc tgtctgaaac caaaagccaa cgccatttca gaaaagaaga
    42541 agtataatga atgaatttat ttaccctaac gcccgattaa tcgccggtgt tgacgaagtc
    42601 ggacgaggac ctttagtcgg agcggttgtg accgcagccg tgattttaga tccgaataac
    42661 ccgattcagg gcttaaccga ttccaaaaaa ttatccgaga aaaaacgcca agctttggca
    42721 gaagagatta aagccaaggc tctgagctgg tcgctaggac gtgccgagcc gacagaaatt
    42781 gatgagctga atattttaaa tgcgacaatg ttggcaatgc aacgtgcggt tgccggcttg
    42841 catattcagc cggattttgt gctaattgac ggcaatcgtc cgccaaaact gccaatgccg
    42901 gcacaagcgg tggtgaaagg agacagctta gtggctgaaa tcagtgctgc ttcgattatt
    42961 gccaaagtcg cccgagatca agaaatggac gaattagacc aacaatttcc gcaatacggc
    43021 ttcgcacagc acaaaggcta cccgactaaa ctccattttg aaaaattagc agaatttggg
    43081 gcaacacctt atcatcgtaa gagttttgcc cctgtaagaa aagtattagg tttaatcgat
    43141 tagaaggaaa acacaatgac tacagagtac caaaaaacga ttttcaccaa aatcatcaat
    43201 aaagaaattc cggcaaatat tgtctatcaa gatgaacttg tgaccgcatt tcgtgatatt
    43261 gctccacaag cacccacgca tattttgatt attccgaata aatttattcc aaccgtcaat
    43321 cacgtgagta atgaagatga attagcccta gggcgtttat ttacggtggc ggcaaaatta
    43381 gcccaagaag aaggcattgc cgaagaaggc tatcgcttag tgatgaattg taataaaaac
    43441 ggcgggcagg aagtgttcca tattcatatg cacttgttag gcggacaaaa actaggacct
    43501 ttagtggcaa aataactatg cgtatttcct actttgcatt tgcaattttt tcgatttttt
    43561 tgaccgcttg tggtagcaaa cctgtcagct atttaccaac cggctcagag cctattgtca
    43621 atattgagtc tgacattgct gaaaagatag agctggaaac gaatagcaag caatttagca
    43681 ccacaaattt aactgaattt ccgcttaatc ttacttataa attattttgg tataataaag
    43741 atggggtaac acaatcccat aacggtatat cagatagtat cggctggcaa catctatggt
    43801 tgcaacctaa gcaaaaacag accattgcac tcattaaacc gacggaagaa agccataatt
    43861 accgcctcta tttacgaggc gtaaaatagc aaaaaagcag agccaactgc tctgcttctt
    43921 tatttatttc aaaaacgggt tggtctgttt ttcccgcccg atagttgtgt gtggaccatg
    43981 tcccggtatg atgatgaaat catcatctaa atcaaacatt ttttccctga tcgtttccaa
    44041 taactggcta tggttgccta aatagagatc tgttcgacct atgctatttt ggaataaaac
    44101 atcgccacta aaagcaatac gattgtcaaa atcaaaaaaa ccgatatgac ccggagcatg
    44161 acccggcaaa tgtcgaacgg tatagctcag ctcgccgact tcgacccgat caccttcctc
    44221 caaccaatga tccggcaaaa agccatttac tggtggtaat ccaaattgtt ggcacatttc
    44281 cggcaaacgt tcaaataaag gtttatctgc aagatgcgag ccgaaaacct ctacttgaaa
    44341 atgctctctc aacttttcca ccgccataat atgatctaaa tgaccgtgcg taatcaataa
    44401 tttctgaacc ttaagctgct gagattcaac aaattgaata atgccttcgg cattatcgcc
    44461 gccatcaata atagccgcat tcttattttc gtcccaaatc accgtgcaat tttgttgaaa
    44521 tggactaaca ggaataattt gcaaattaaa cataaaataa gaccgcttgt tagcctctcc
    44581 aagtgcgaac tgggccagta tctacgtgaa caaagttact acgaggataa taacctacgc
    44641 caccattatt caagctctca gccgcttgtt ttactttata taacggcaca cctgatactt
    44701 ggaaatctac tgcttgccca agaatatggt aactatggct ggcaacacca cggcttctac
    44761 gacgaagtct tgcatttgtt tgtgcggagc gatagccact taatactagg atttccgcat
    44821 tatggaaacc taaacggcgt tgtaattgat tcaatttgac aaataatttt ggatcaattg
    44881 ctttaacttg attgatatga cgatcccgca ttaaatagtt taactggctt aaatcggttt
    44941 tatttaatcc acctgcacca aatttagcag tgtaagtatc gcctgtattc acattacgaa
    45001 aacgtaacgc agctggggca ggagtagaaa gcgctgccat tacttgaccc ggcagaaggc
    45061 tagcccctaa aacaagtccg ccgagtgata gccacttacg gcgttgaaca ttaatttgtt
    45121 tcattttttc ctcataggtt agctaatgat ttatagaaaa tcactcacaa atgagcgaat
    45181 ttctatacac catacttaaa gtaaaaattt acaatcgtaa atttatgtaa gctatatttt
    45241 caaaaagttc caagaagatg atatcttctt ggaatttatc agaaatagca cgattaaata
    45301 atgctcttta attttcccca attcacagaa tgttgtggga ttttggcatc aaagttataa
    45361 atgtccggaa gggtttgcac ttttccacct tcaacccaag ccgtcacata atagagataa
    45421 accgggttat ctgaacgaat ctgagccgag gtcgtcttct tactgcctaa gacttgattc
    45481 tttttatcag atccccaacc cgcttctttt aataaaatgg ttgccaattc atcagatttt
    45541 tctacacgga cacaaccaga acttaacgca cgccccgttt taccaaataa tcctctattt
    45601 ggcgtatcat gcaaataaat tgcatccgaa cttggcatat taaatttata acgtcctaaa
    45661 gcgctatcat cacctgcttt ctggcgaata cggtatggtg aacttttagc atttaaatat
    45721 tgtgaccaat ttacgctacg cggattaatt ttattgccac tactatcaag aatttcgaaa
    45781 ctagcacgat ctgcataacc tgggtcacgc gctagtttag gaataatatc tttagtcata
    45841 atactagtcg gtacattcca aggtggattc actaccacat tgctcagctt actatacatt
    45901 accggtgtac ggcgatcttc tcgcccaaca atcactttag attgaagagc taaattacca
    45961 tcacggaaat aatataattg atagcttggg atattcacaa aaattccatt gttaaaactt
    46021 ggaataatac gtaaacgttg agcattgagc gctaatttat agaaagaagc cccattaccg
    46081 ccaccagcta cctccgtaac agctttacct tttttggctt taggtgctga agagcctcct
    46141 gccattgcca atactctctg tgccgtatca cgatataaat ggtttcttgg aacaaggtct
    46201 gttacaaact gcccagaatc gccttccctc acggcattag tccattggaa gatttgctct
    46261 gaagagggcg attttggtac ataactgcct aagttatata accaattatt tgcattttta
    46321 aacacatttt tgttgtaata caaataatct aagaagccat cagttaataa aatatctcta
    46381 cctaaacctt ccggttgatt taagatttgc tgcaatgcct tagctgattt agaggatacc
    46441 ccacttactg caaataatgc atattctttc aaaaatgctt tttctgcggc tttatcattc
    46501 cacattgtcg caaattcact gtctaaataa accttagttg ttgcttggct cagcaataag
    46561 gcattattac ctatttcttg cttaattctt gcttccgctt ctgcaaattt tcttgcttgc
    46621 tcttgacgaa tttgttcctg ttctaacgca taatcggcct gttttaccaa ttctgcagca
    46681 cgagcctgct gagctgcaaa acttaattgt ggtaaaatat tatcttgtac aacaggctca
    46741 gaagccacct gagcaactgt ggctgtttca gccaaagcca tgccagaaaa cgccaccata
    46801 ataggtaata atttaaaggt tttcacccac tcttcctctt aatatttgca aatttataaa
    46861 aaaataaacc gcttagcgga gctaagcggt acgttatgtg cgcattataa acacatttat
    46921 gattttttat caaattctga ccaatcaagc atcatctgtt cagcttcttt taagaaaaag
    46981 tccggtgctt catagtcttt tggtaaatca tcaatatctt ttaatgcttt tttgccttca
    47041 cgggcaaaac gagcattaat atcttttaag cgcttgcttt catctgcttt attttctttc
    47101 aggcgttctt ctaaatttaa cgataaaaac ttacgctcat cacgttcttt tcgaatcgca
    47161 atattctcgt ttaatactat aaactctggg tttttagcaa tacgctcttg atgtttcgct
    47221 gttaatgcag caaccgcgtt acgagcattc ccagcctctt tataattagc tgctggaatt
    47281 ttatcccaag gaagcgcatt atcttcaaaa ctttcacctg tttttgcagc attaatgatt
    47341 tccgggaatt taatatccgc ctcaacccct tttagctggg tacttccacc attgatacgg
    47401 tagaattttt gaatcgtata ttggataaaa ccaagaggct cttgatccaa atcatataca
    47461 aaattcaatg aacggctctg ttgaacagtt cccttaccaa aggtttgttg ccctacaata
    47521 attgcacggt tgtaatcttg cattgccgca gcgaagattt cagaggctga agcactatgg
    47581 cgattaatca tcaccatcac ttttccatca taaactgatt ttgattctgg atcttcgtgt
    47641 actttgatac gattgaatgc gtcttgtact tgcactacag gcccatcttt aataaataaa
    47701 ccagttaatt caatcacttc agttaacgaa ccaccaccgt tttcacgtaa atcaatgatc
    47761 aatccttcaa catttttttt ctctatttga gtaagtaatt tacgtacatc tgaagtcaaa
    47821 ccgatataaa aagtagggat cttaattacc cctacatttt ttccatctac tttttctacc
    47881 gttaatttag cagcactatc ctcaatacga actttatcac gcacaagggt aataatttta
    47941 gtttttccac ctttttcagg ctcaatttct aaacgaactt tagtgccttt tttacctttg
    48001 attttatcga ctacattatc caaacgccaa ccgataacat cttcaatctc acctctctca
    48061 ccttgaccta caccgacaat tttatcgccg actaccagct tcttactttt agcggcaggg
    48121 gctcctggca ctaatgctct aatgctggtt acatcatctt cttgggttag cgttgcacca
    48181 attccttcta gcgacagatt catgctctct tggaacgctt ttgccgcacg aggagacaaa
    48241 tagctagtgt ggggatcgat ctcacgagag aatgaattta agtaagtttg taaaatatca
    48301 tcagccttaa cttgagttaa acgcttaatc gcaaagttat aacgtttagt gagtgttttc
    48361 ttaatttcag gccatttttt atctttaaga tataaattga taatatcgtt tttaactcgc
    48421 tgctcccaaa gtgtatttgc ctcttctaca ctttttggaa atgcggcctt ctcacggtca
    48481 atctcaattt catcattccc ttttaagtca ggctctttat ctagtaaaga taaggcatag
    48541 ctataacgct cataacgacg tttagacatt aactcataca ttgcaaatgc tgcatctaat
    48601 ttaccagcat ataaatcatc atctaatgtt gtagcatatt tactacgcat ttcatcaata
    48661 tcggcttgaa gaaaagtatt atgagaagga tcaagccaat cgacatagcg gttaaaaatc
    48721 ttccctgcaa actcatcatt cagttgaaat ttatgataat gcgattgagt taatcgggct
    48781 gttacacgct tggttgataa gctatgctgc tcattaggtt ttggcatcac aatcgcactt
    48841 tctttaatgt ccggctgaac ggcaaaagcg tttcctatca ttaaacctag ggctagggca
    48901 aaaattttat ttaatcttgt taatttcatc ttcttttcca aataatcaag cggtcatttt
    48961 tttgcaaaat tttactaaaa tccgaccgct tgtaagcaca aagcgacttg aaaactattt
    49021 acgaccgaat ttatctgcta atgcagctaa tttttcttct gaagctttag gtaaattatc
    49081 tattgctttt ttcgccttaa attctgcacg ctttttcgca ttttcttcac gtgctttctg
    49141 tttgaagtac tctttacgtt gtgctttacg ctcttgtgct ttacgttctg caaccaccgc
    49201 tttcgcagca gccaaagctt ctgcggcgtg agtagcttcg tcttctgtta ccacgccaac
    49261 ttcttcaccc tgtaagccga cacgagcaac attagcttgg ctggcagcca agtaacgcca
    49321 agaattagtg taattccgca atacttggcg caataacgtt ttactgattt tctcatcatc
    49381 ttttaatgct tcagctaatt cctgaaacaa cccaactttc aatggtttta cttcaccttc
    49441 aagcgtgaaa caaagcggaa atttctccgc taaataagca atcacttcct tggtacttgg
    49501 attggtttta ttctgagttt gttctacttt ttgctcaatt tgctctgaca taataagtcc
    49561 tatttaataa aaatctaata attagataag tgaaaatcta actggatact atatttgatt
    49621 tataaggctt cgtccatata aattccacat tacgtttaca aaagagatag actctttttt
    49681 catttgaatg ttcataaaag tataaaaatg atttgcttaa aaaatgaata agtggtgtaa
    49741 tggctcaagc tgttcgtgcg ttaattaaag ttgaatcttg ttagttattt tcctc
//
LOCUS       DANMBQ010000005        49684 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.005, whole genome shotgun sequence.
ACCESSION   DANMBQ010000005 DANMBQ010000000
VERSION     DANMBQ010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 49684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 49684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..49684
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.005"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            23..2322
                     /locus_tag="PXE92_000248"
                     /pseudo
     CDS             23..2322
                     /locus_tag="PXE92_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759321.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(2400..3101)
                     /locus_tag="PXE92_000249"
     CDS             complement(2400..3101)
                     /locus_tag="PXE92_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HDL5759542.1"
                     /translation="MDLQNRENFLNKLAQRMGRPRQNVPEPIPVLENNHAITRLTDRP
                     QPQLCQEFIDFARVMMADVVEAKEADLPQAIIDICEKYGGASVIVNNDQRLKDLGITA
                     AIQAKYEDSYVWDFNQAETNFEKARTANIGVVYGEYGLAESGGIVLFSDKEFGRSVSL
                     LPEKSVVVLRKSTVLPRVAQLAQILHEKAQRGERMPSCVNIISGPSATADIELIKVVG
                     VHGPVNKIYLVIDDL"
     gene            complement(3106..4515)
                     /locus_tag="PXE92_000250"
     CDS             complement(3106..4515)
                     /locus_tag="PXE92_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HDL5759543.1"
                     /translation="MSYLQTNTLPFKQRVEQQVNNEIVRKALVKAQETIGANRQRMVD
                     ELGNWEEWRDDAKAIRNHVLANLDAYLYQLSEKVTQNGGHVFFAETAEEATDYIKNVA
                     KAKNAKKIVKSKSMVTEEIGMNHVLEAEGIKVVETDLGEYLLQIVGDKPSHIVVPAIH
                     KDRHRIRQEMHDVLGYQGSETPEEMTAFVRQKIREDFLEADIGISGCNFAVPETGSVC
                     LVTNEGNLRMATTVPKTHIAVMGMERIAPTFKEVDVLITMLARSAVGAKLTAYNTWLT
                     GPRLEGETDGPEEFHLVIVDNGRSKILESEFQEVLRCIRCGACLNTCPAYRQIGGHGY
                     GSIYPGPIGSVISPLLGGYEEFKELPYACSLCTACNSVCPVKIPLAQLILKHREKIAD
                     AGLTPMAERLSIFGFNFANSHPTLWKVGVKVGAKVASKLIKNGKAPVNFGALGEWTKA
                     RDLPTAEGESFREWFNNRG"
     gene            complement(4517..5248)
                     /locus_tag="PXE92_000251"
     CDS             complement(4517..5248)
                     /locus_tag="PXE92_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDL5759544.1"
                     /translation="MNVNFYVTCIADVMKAGVAKNTVLLLEKLGCKITFLEKQGCCGQ
                     PAINSGYTKQALAGMKNLVETFEANDYPIVAPAGSCVYAIKTYPDHFERFGEKEWAER
                     AKKVADRFYDLTDFIVNKLGVKDVGAYLPGKAVYHPSCSLFRKLGIKDEPIALLQHVK
                     GLELLPIKNQETCCGFGGTFSVKMAEISGEMVKEKVANVDTDEPDYLIGADVSCLMNI
                     GGRLSREGKPIKVMHIAEVLMQGGK"
     gene            complement(5392..6996)
                     /locus_tag="PXE92_000252"
     CDS             complement(5392..6996)
                     /locus_tag="PXE92_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDL5759545.1"
                     /translation="MALFLSVFPIVLLIYLMVKRNALPSYVALPLTALLIFVLQLTYF
                     GNDTTLIFANIIAGLGDVLTPITVIFGAILFNRFSEVSGATNTMRKWLGTINPNPVAQ
                     LMIIGWAFAFMIEGASGFGTPAAIAAPILVGLGFKPLQVAMLALVMNSVPVSFGAVGT
                     PTWFGMGPLLKDGLLTDAQVLEIGSITALIHSIAAFIIPVMALRLIVSWKEIRQNIVF
                     IYISIFACVIPYFIIAQFNYEFPSLVAGAIGLLVSVWVANMGIGLAKSENHLDGDKAT
                     FGEVAKALLPTGLLIFILVITRIQQLPLKAMLNDATAWIVSSLGFANFEISQGLIFAL
                     KNILGTNVATSYKLLYVPALIPFVVTVLICLPIFSVSGKNTQEIFGTSFKQVKKPFLA
                     LLGAIVMVKLMLIGGVDSMVQIIGKNFAEFTGQSWTLFASFLGAIGAFFSGSNTVSNL
                     TFGTVQYATAQQVGLSVTLILALQSVGGAMGNMVCINNIVAVCSVTGIEKQEGNIIKK
                     TAVPMFVYGVIAAISALFIVPMFYNL"
     gene            complement(7286..8377)
                     /gene="ychF"
                     /locus_tag="PXE92_000253"
     CDS             complement(7286..8377)
                     /gene="ychF"
                     /locus_tag="PXE92_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDL5759546.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVV
                     PMPDPRLDALAEIVKPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGH
                     VVRCFENDDIVHVAGKIDPADDIEIINTELALADLDSCERAIQRLQKRAKGGDKDAKF
                     ELSIMEKILPVLENAGMIRSVDLDKDELHAIKGYNFLTLKPTMYIANVNEDGFENNPY
                     LDRVREIAEKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYRL
                     LNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYQDFIDNKGEA
                     GAKEAGKWRLEGKDYIVQDGDVMHFRFNV"
     gene            complement(8563..9150)
                     /gene="pth"
                     /locus_tag="PXE92_000254"
     CDS             complement(8563..9150)
                     /gene="pth"
                     /locus_tag="PXE92_000254"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDL5759547.1"
                     /translation="MSEIKLIVGLANPGVKYEETRHNAGEWLINELARIYNVSLKEEP
                     KYFGKVAKINTAQGEVRLLVPTTFMNLSGKAVGALANFYRIKPEEILVAHDELDLPPG
                     SVKLKKGGGHGGHNGLKDIIAALGNNKEFYRVRIGIGHPGHKDLVANYVLGKPSPSDQ
                     TLLNSAVDEAARCVEVLFKDGMVKATNRLNSFKAN"
     gene            complement(9223..10098)
                     /locus_tag="PXE92_000255"
     CDS             complement(9223..10098)
                     /locus_tag="PXE92_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HDL5759548.1"
                     /translation="MMKKFIPVMIAALVLSACSSQPAKRKSTPRIKATAAYIPTENSA
                     YVVFDLNQKKFLEGKNFNLVRPIASVTKLMTAVVFLEENRYGASCQTQILPSDADFLK
                     GTTSPLPKNLNIACSELLKAMLVRSDNYAAHALAHATHLNKAQFLARMNSKAREIGMT
                     QTYFGDSSGLSSDNVSTVVDLAKLAGYAASKPEIQQLSNSPLVSVYAGGRYFSMKNTN
                     SMVRSQSYQALVSKTGYTREAGYNLAFIAKGDCRGKRIGVVSLNNDNAASRTDFTESM
                     LAKYQCVPNPYRQYD"
     gene            10320..11900
                     /gene="prfC"
                     /locus_tag="PXE92_000256"
     CDS             10320..11900
                     /gene="prfC"
                     /locus_tag="PXE92_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HDL5759549.1"
                     /translation="MSYPQEVNKRRTFAIISHPDAGKTTITEKVLLYGNAIQTAGSVK
                     GKGSAQHAKSDWMEMEKQRGISITTSVMQFPYNDCLVNLLDTPGHEDFSEDTYRTLTA
                     VDSCLMVIDSAKGVEERTIKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVESVLK
                     IKCAPITWPIGCGKLFKGVYHLYKDETYLYQTGQGHTIQEVRVVKGLNNPELDQAVGD
                     DLAQQLRDELELVQGASHEFDHTEFIKGELTPVFFGTALGNFGVNHFLDGLTEWAPAP
                     QARQSDEREVSPSEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRIG
                     KDVVISDALTFMAGDRSQAEEAYAGDIIGLHNHGTIQIGDTFTQGENFKFTGIPNFAP
                     ELFRRIRLRDPLKQKQLLKGLVQLSEEGAVQVFRPLINNDLIVGAVGVLQFDVVVSRL
                     KTEYGVEAIYETVNVATARWVEGKDAKKFEEFKRKNEANLALDGGDNLTYIAPTMVNL
                     NLAQERYPDVQFFKTREH"
     gene            12159..13733
                     /locus_tag="PXE92_000257"
     CDS             12159..13733
                     /locus_tag="PXE92_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5759550.1"
                     /translation="MKKWLIPLTVAAFCVSACDDKNSTQATAEKPQVENTQSQKNAEI
                     LPLATVVAPWEINSLDPNQSGVIFQRMNLAETLVEADLNGNLIPALATDWRSNEEGTI
                     WRFTLREGVKFHNDQVLTAQAVVNSLNIAKSKPGVLAKAFIKEIRAVDNKVEIELTKA
                     FVPFPPFLTHYTALILAPESYNEKGEVTQIIGTGAFKPTKIEAPQKLEAVQFEGYWGK
                     KPQVQQANYLASSRSETRMLMAQSEPSSLVFNLDTASVARLKADPNLQLVSGSIARTI
                     QLKMDVAKPFFNDLAIRQALSQAINRKAIAEQVLKIENGAADQILPKAFADWRVDTAE
                     QVVDIAKIKQNLTASGYTFDEQGRLTKDGKPFSFTMRTFSDRPELPVIATILQAQWKQ
                     IGVEVNVSVGNFSEIPAGHQDGSLEMALYALNYGKTLDPYGVIASDFANGGSDWGVMN
                     WQNTEVDNAVKSLETERDPQKAKALKQTVSKIIYNDLPIIPVVYYQQNVVAHKEVKNV
                     TLDPFERRFFLELLSK"
     gene            13953..14885
                     /locus_tag="PXE92_000258"
     CDS             13953..14885
                     /locus_tag="PXE92_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5759551.1"
                     /translation="MHKILFRRLIQILLVIWSVGTLTFILTRQLSGDMAYRIAASRYG
                     YDQADSAAAEAVRAELGLDQPWWQSYFSWLSDLAQFNLGKSLVTGDPVWSEIQHQFGH
                     TLSLAIVALILAILIGPPLGLLAARKPNGFFDRLTLVFSTLFRSVPAFIIAIGLITLF
                     SAQLKWLPAGGYGCWQHFILPALTLAIGLSTVSVRVTRSAMVQVKGSEFYQFSQLKGL
                     SRWHTFLRHGLPNIAVPVIAYHAVQLVYLIEGVVVVESLFAWPGSGHALVHAIIARDV
                     PMIQGTTLVMGGLFVVLNTIADLLSAWIDPRIKR"
     gene            14895..15677
                     /locus_tag="PXE92_000259"
     CDS             14895..15677
                     /locus_tag="PXE92_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5759552.1"
                     /translation="MKISISQYLGGTILLAMLGFAFLQPYFYPMDIGFQDLTNILSNP
                     NEIAWFGTDHLGRDMLARLASAIRLSFGLSLFSVICALIAGLITGIMAGFFGGWIDRI
                     FSFICDLVMALPGLLLVLLFAALSPGSFWTLYLGISLVMWVEFFRVIRSISSTMANSS
                     EIQASRLMGMGWFYSFKRHLLPRLLPMIATLSAFSLGNAILALATLGFVSVGLRPPTA
                     ELGLMMTELFPYYYEAPLIFLQPVVAVFLMVLSLQLLSRKIK"
     gene            15766..17178
                     /locus_tag="PXE92_000260"
     CDS             15766..17178
                     /locus_tag="PXE92_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5759553.1"
                     /translation="MKLLDIQNLSVETENRLQLVEPISLQLKAGKNITILGETGSGKS
                     LLIQAIMGALPDGLIASGEISVKNCKISTESDRLQTLWGKTLVMLPQEPRRSLNPIMA
                     IGKQLWESFHYVAGKPSSQAKTESKAYLAKLGLGESVENYPHQLSGGMAQRASFAIAT
                     AAGGKILLADEPTKGLDPISKGKVIELLKSAYQNGGGLLTITHDIEVAEQLGGTILVM
                     KKGELLEQGEAKALLNNPQHPYTKALISADPKHWQPLQDLQNLSQKQPLVSVKNLSIA
                     RGKKTLFSNLSFDLHKGEVLGIVGHSGIGKSSLADVLCGLLKPKSGEVVWHSHSHKKH
                     QVLKLYQDPPEAFAPNVSLKTLLDDVINKHQLDRLPIPSLLQQLSLNPEILQRNAENV
                     SGGELQRVAILRALLLEPVLLFADEVTSRLDPITQQETIELLINQCRARNCSLILVSH
                     DPYLIEKSCDKVINLEEYVG"
     gene            complement(17265..18008)
                     /gene="rlmB"
                     /locus_tag="PXE92_000261"
     CDS             complement(17265..18008)
                     /gene="rlmB"
                     /locus_tag="PXE92_000261"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDL5759554.1"
                     /translation="MSEQIYGIHAVKAFLDNAPERLIEVLVLKGREDKRLMPLLNELQ
                     RLGVAIQQVNRQTLDNKSQGEVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDG
                     VTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLART
                     MRDLQERHNVWIVGTAGEAESGIYEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIP
                     MAGSVSSLNVSVATGVCLFEIVRQKLAGQ"
     gene            complement(18063..19430)
                     /gene="pssA"
                     /locus_tag="PXE92_000262"
     CDS             complement(18063..19430)
                     /gene="pssA"
                     /locus_tag="PXE92_000262"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HDL5759555.1"
                     /translation="MLILNKQRKAEYLLKSLPYLPQVAEQVQFLASSKAFKQQILQLI
                     QTAKKRIYITALYFEKDEAGQEVLAALYQAKRNNPELEINILVDWHRAQRGRIGEAEN
                     LSNADWYAKVKYEQGLPAGQEIAFYGVSINGREVFGVLHLKGFVFDDTILYSGASINN
                     VYLHQFERYRYDRYHVIENKVLADSWVTFIQQHLLTNEAVKRLDTENRPKTAEIRAQI
                     KHFRKQLSREAYLFNGVAENGRLAVSPLVGLGRRKNQLNKVIEALFYQTEQKLTICTP
                     YFNFPHSLRTRIEWLLANGKSVEIIVGDKTANDFYTKPDEKFTMASALPYLYEKNLRA
                     FAKRLDGYVQNKQLTIRLWKDGENSYHLKGVWVDNRYILLTGNNLNPRAWRLDAENAI
                     LISDPQHQLSEKAETELNQICQHTQILTHYSDLEVLTDYPENVRKLLKKFGRVKLDKI
                     VKMLL"
     gene            complement(19500..21047)
                     /locus_tag="PXE92_000263"
     CDS             complement(19500..21047)
                     /locus_tag="PXE92_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HDL5759556.1"
                     /translation="MMKIIAFLFIFLSVFSHTALANSMAEQCVALKSNSPEKTAIYKA
                     EWVEKSAELPAYCLVQGEIGKRVEVDNVPYGIQFELRLPEQWNEKFLFQGAGGVGGVI
                     FPAIGKLYPHGASGANGLNRGYAVVSNDSGHATRDLVFTADPEARSNYAYASIGKVTT
                     VAKQLIAEFYRKPSKHNYIMGCSNGGREAMMAAMRYPQEFDGVIAGSPGFRVSRSVLA
                     EVWDNRALLAVAPKNGDGDKILSQALTQQDLDVIANGVLTRCDKLDGLADGLINAWEQ
                     CDFQPEMVAKQLGQKKVALIKTIFEGAKNSRGELIYSPWAYDSGINAKGWRDWKLGDS
                     QTAQPNSISFKMGLKSLTHYYLAPRVPSRDPLSVDLDQASEQVKAVGSIHDTDQVDLS
                     AFKQNGGKMLIYQGVSDPIFSAVDLKNWYQSLQQAVENPQHFAKLFFVSAMNHCGRGA
                     TVNDFDMLTALENWVEKGLEPESIAAKAGELYPNKAKQIPLCAYPKVAIYQTGEDPNR
                     LTSYQCR"
     gene            complement(21172..23988)
                     /gene="ileS"
                     /locus_tag="PXE92_000264"
     CDS             complement(21172..23988)
                     /gene="ileS"
                     /locus_tag="PXE92_000264"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDL5759557.1"
                     /translation="MTIDYKNTLNLPETGFPMRGDLAKREPDMLKNWYDKNLYQKIRT
                     ASKGKKTFILHDGPPYANGNIHLGHAVNKILKDMILKSKTALGFDTPYVPGWDCHGLP
                     IELKVEGIVGKPNEKISAAEFRQACRDYAKEQVEGQKADFIRMGILGDWDNPYLTMNF
                     NTEANIIRTLGKVIANGHLYKGSKPVHWCLDCGSSLAEAEVEYEDKVSPSIYVRFNAV
                     DVNAVEEKFNAQGKGRGALSAVIWTTTPWTIPSNRAIAINPELDYALVQLGDERVLLA
                     VDLVEDVAKAAGVESAEILATTKGENLELLRFNHPFYDYSVPFIFGDHVTTDGGTGLV
                     HTAPDHGADDFVVARKYNIEMAGLISNDGKFKADTPFFAGLGVFESNDKVVEKLQEVG
                     ALLKLSRIKHSYPHCWRHKTPIIFRATPQWFIGMETQGLRQQALGEIKSVRWIPSWGE
                     ARIDTMVANRPDWCISRQRTWGVPMAMFVHNETEELHPRTLELIEEVAKRVEEKGIQA
                     WWDLDPAELLGEEAKDYRKVPDTLDVWFDSGSTYASVVEQRPEFNGNSADMYLEGSDQ
                     HRGWFMSSLMLSTATNGKAPYKQVLTHGFTVDEKGRKMSKSLGNVIVPSEVWNKNGAD
                     ILRLWVASTDYTGEITVSHNILNSAGESYRRIRNTARFLLANLNGFDPKSDLVQPQEM
                     IALDRWAVACALEAQNDIKEAYDNYQFHTVVQRLMRFCSIEMGSFYLDIIKDRQYTTK
                     ADSLARRSCQTALWHIAEALVRWIAPILSFTADEIWGYLPQVEGRSEFVFTEEFYTGL
                     FGLTEQDKLDDAYWQQILKVRAEVNRVLEQARKDKVIGAGLEAKVTVFANDEIRPLLE
                     QLGNELRFVLITSQAIVKPLAEADIAEGELAGLAVKVENADGEKCPRCWHYATDIGSH
                     SGHEEVCGRCVENVAGEGEKRLFA"
     gene            complement(24091..25053)
                     /gene="ribF"
                     /locus_tag="PXE92_000265"
     CDS             complement(24091..25053)
                     /gene="ribF"
                     /locus_tag="PXE92_000265"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDL5759558.1"
                     /translation="MQLIRGFHNLDKHIALNQGCVLSIGNFDGVHLGHQNILARLCDR
                     ALDLGLPSVVMLFEPQPREFFAKKSGNSTACNPPARLMRLRDKLKYLEEAGVDFVLCV
                     RFSEKFAQISADDFISDLLAKRLKVRYLSVGDDFRFGAKRAGSFETLRNAGLKYRFAV
                     EESHTHSLNEERISSSLVREALQNNELDLAEKLLGKPYSILGRVAHGNKLGRTIGFPT
                     ANIMLNRLVTPIQGVFAVKVKTKQGSFNGIANVGNRPTINGTKPLLEVHIFDFNASIY
                     GEAIEVIFLKKLRNEIKFPDFEALKAQIEKDRLQAVEFFKEFAR"
     gene            25277..26551
                     /gene="nadR"
                     /locus_tag="PXE92_000266"
     CDS             25277..26551
                     /gene="nadR"
                     /locus_tag="PXE92_000266"
                     /EC_number="2.7.1.22"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional transcriptional
                     regulator/nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide kinase NadR"
                     /protein_id="HDL5759559.1"
                     /translation="MTDFAYLQQKRKQLKLKVNDICEQAGVTRAYFNQLVSGKIKNPS
                     ANKLKALHSVLDIVEDSNQRSGVIFGKFYPIHTGHINMIYEAFSKVDVLHVIVCTDSE
                     RDLRLFQESKMKRMPTNEDRLRWVQQIFKYQQKQIFIHHLVEDGIPSYPNGWEDWSGR
                     VKALFEEKSINPTIVFSSEIQDKESYEKYLNLEVQLVDPTRESFNISATQIRNNPFQY
                     WRFIPKEVRPFFVKTIAILGGESSGKSVLVSKLANVFNTTSAWEYGREFVFEQLGGNE
                     QAMQYSDYPQMVLGHQRYVDYAMKHAHKVAIIDTDYITTQAFCIQYEGKAHPFLDSMI
                     REYPFDVTILLSNNTKWVADGLRSLGSKKQRQQFQHLLKKLLEKHHIPYIKIESPSYL
                     DRYNQAKEVVEAILNEEPIPLQFKQYNIHEFE"
     gene            26569..27261
                     /locus_tag="PXE92_000267"
     CDS             26569..27261
                     /locus_tag="PXE92_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5759560.1"
                     /translation="MILFAGDPHGSYEHLYPILQQQTEEVALVILGDLQLTTPDELDR
                     LSQYCDIWFIHGNHDSKTVAAFDAIWNSSWKERNIHGKVVDIQGIKIAGIGGVFRGHI
                     WMPPNRPMFFDPIHFCQYSAPEKIWRGGIPLRHRSSIFPSDFEALENEKADILITHEA
                     PKPHPQGFSVINQLARKLGASKIFHGHYHDNFNYGNLNVSRECAIYNIGFRSLADING
                     NYLILGVDDREK"
     gene            27394..28116
                     /gene="arcA"
                     /locus_tag="PXE92_000268"
     CDS             27394..28116
                     /gene="arcA"
                     /locus_tag="PXE92_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HDL5759561.1"
                     /translation="MKIPQILIVEDELVTRNMLKSIFEGEGYQVFQASNGEEMHSVLS
                     TNEINLVLMDINLPGKNGLILAREIRENMKLPLMFLTGRDNEIDKILGLEIGADDYIT
                     KPFNPRELTIRARNLLQRTMIDKENDVVKEQSEIESYRFNGWILDINSHSLISPEGEV
                     NKLPRSEFRALLHFCQHPGKIQTREDLLKKMTGRELKPHDRTVDVTIRRIRKHFEDHP
                     NTPEIIVTIHGEGYRFCGNIEP"
     gene            28136..28654
                     /locus_tag="PXE92_000269"
     CDS             28136..28654
                     /locus_tag="PXE92_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HDL5759562.1"
                     /translation="MKKLTIVALTCLFSTHLLAAPVGNTFTGIGVGVDVTTTKYKVEG
                     VKGKDSTGPALVVDYGIEQGNNFVGVVQGKAKVGSTKVFSDVKQKNKYTIAYQQGYRV
                     GSDLLPYVKVDASSSKIGNETYRGFGFGAGAKYAVSSDVELGAEYTRDNLKRSGTKLK
                     GNAFTANATYRF"
     gene            complement(28732..29961)
                     /gene="serA"
                     /locus_tag="PXE92_000270"
     CDS             complement(28732..29961)
                     /gene="serA"
                     /locus_tag="PXE92_000270"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDL5759563.1"
                     /translation="MAKISLDKSKIKFLLLEGVHQNAIDVLLAAGYTNIEVHKKALDG
                     QELIDAIKDAHFVGIRSRTFLTEEVLAQAPKLIAIGCFCIGTNQVDLNAAKRRGIPVF
                     NAPFSNTRSVAELVLAEMILLMRKVPTANAEVHRGVWNKSAAGANEVRGKKLGIVGYG
                     HIGSQLSILAEAIGMQVYFYDVENKLPLGNAQQVPTLEHLLSTCDMISLHVPEIDSTK
                     NLMSAERIAQLKEGSVLINAARGTVVDLDALAARIEDGSLRGAAIDVFPEEPASINDP
                     FVSPLCKFDNVILTPHIGGSTSEAQANIGTEVANKFVKYSDNGSTVTAVNFPEVSLPL
                     HTNTKRLLHIHENRPGMLNQINQIFVESNVNIAAQYLQTDAAIGYVVIDVESDNVDEA
                     LQRLKAIEGTIRARVLY"
     gene            complement(29998..30657)
                     /gene="rpiA"
                     /locus_tag="PXE92_000271"
     CDS             complement(29998..30657)
                     /gene="rpiA"
                     /locus_tag="PXE92_000271"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HDL5759564.1"
                     /translation="MDQQEMKKIAAQAALKFVKPDTIVGVGSGSTVNCFIDALASMKD
                     EIKGAVAASKASEQRLRDIGIEVFSANEVTELDVYIDGADEITPQGAMIKGGGAALTR
                     EKIVSSLAKKFICIVDKSKQVDVLGSTFPLPVEVIPMARSYVARQLVALGGSPEYREG
                     VVTDNGNVILDVHNFKIMEPLKMEHTINNIAGVVTNGIFAQRFANVTIVGTPEGAVIL
                     E"
     gene            complement(30802..32136)
                     /gene="glmM"
                     /locus_tag="PXE92_000272"
     CDS             complement(30802..32136)
                     /gene="glmM"
                     /locus_tag="PXE92_000272"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDL5759565.1"
                     /translation="MARKYFGTDGVRGEVGKFPITPEFALKLGWAAGKVLATQGTKKV
                     LIGKDTRISGYMLESALEAGLTAAGLSAVFVGPMPTPAIAYLTRTFRAEAGIVISASH
                     NPYYDNGIKFFSSVGEKLPDEIEEAIEAMLDKPMDCVDSANLGRASRINDAAGRYIEF
                     CKGTFPSELSLEGYKIVVDCANGATYHIAPNVMRELGAEVLEIGTKPDGLNINEKCGA
                     TDIKALQKVVVEAGADVGLAYDGDGDRLIMVDHLGNKVDGDQILFILAREALRSGKLQ
                     GGVVGTLMSNMSLELALKELAIPFSRANVGDRYVLEQLKEKGWKLGGENSGHIIVLDK
                     NTTGDGIIASLQVLAAMASHKLSLNDLAKAVPLFPQVLLNVRFEKGAANPLESNEVKA
                     VAADVEKRLAGKGRILLRKSGTEPLIRVMVECEDAVLAQSCAEEIVEAVKRN"
     gene            complement(32162..33694)
                     /gene="ilvA"
                     /locus_tag="PXE92_000273"
     CDS             complement(32162..33694)
                     /gene="ilvA"
                     /locus_tag="PXE92_000273"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HDL5759566.1"
                     /translation="MMNETQHSQSAIDYLRSILSSNIYDLAQVTPLQKMEKLSERLGN
                     SIFIKREDRQPVHSFKLRGAFAMISNLSKAQKEAGVIAASAGNHAQGVALSAKHLGLR
                     ALIVMPQNTPAIKVDAVRGYGGEVLLYGANFDEAKAKAIELSTELGMTFIHPFDSPAV
                     IAGQGTIGLELVQQKPDLDYVFIPVGGGGLIAGIAVLIKQVMPNIKVIGVESKDSACL
                     YHALKQGQPTDLERVGLFADGIAVKRIGDETFRLCQQYVDDVVLVDNDEICASMKLIF
                     ENVRAISEPSGATSLAGLKKYVKEHQLQDKNLACILSGANVNFHTLRFVSERCEIGEK
                     REALLAVTIAEQKGSFLKFCEILGNRAVTEFNYRHSDDKQACIFVGVRISGSAEKVEI
                     IKDLQQNGYDVADLSDDDIAKTHIRYMVGGRASSIQYEQLYSFEFPEQKGALLKFLQM
                     LTNWDISLFHYRAHGADYGDILAAFALNRGDEVELNRHLEQLGYRFQNVSESPAYQYF
                     LK"
     gene            complement(33955..34548)
                     /gene="slyD"
                     /locus_tag="PXE92_000274"
     CDS             complement(33955..34548)
                     /gene="slyD"
                     /locus_tag="PXE92_000274"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL5759567.1"
                     /translation="MNITKDLVPSIAYQVRTQEGVLVDEAPVNQPLEYLHGHNNLVEG
                     LEKALEGKAVGDVFEVRVKPEEGYGEYNDNMVQRVPKDVFMGVDELEVGMRFIADTDL
                     GPLPVVITEVDGDEVVVDGNHMLAGQELLFSVEVVGIREATAEEIAHGHVHGGHEHGC
                     GCGGHDHHHDHDGCCGGHDHDHHHHHGHGGCGCGGHH"
     gene            complement(34651..34791)
                     /locus_tag="PXE92_000275"
     CDS             complement(34651..34791)
                     /locus_tag="PXE92_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759568.1"
                     /translation="MKKLIKVCGLISATIFLSGCLVTSVVGGVVGTAVDVVDTVTPDI
                     ID"
     gene            complement(34863..35549)
                     /gene="aqpZ"
                     /locus_tag="PXE92_000276"
     CDS             complement(34863..35549)
                     /gene="aqpZ"
                     /locus_tag="PXE92_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HDL5759569.1"
                     /translation="MKKYFAEFFGTFWLVFGGCGSAVLAAGIPELGIGYAGVSLAFGL
                     TVLTMAYAVGHISGGHFNPAVSIGLLVGGRFNAKDLVPYIIAQVIGAIAAGAVLYTIA
                     SGVPTFDATAGFAGNGYGEHSPHGYSLTAALLIEVVLTAFFLIIIMGATDKRAPAGFA
                     PIAIGLALTLIHLISIPVTNTSVNPARSTGVALFQGSWAIEQLWLFWVAPIVGAIIGA
                     VVYRFIAEEK"
     gene            complement(35737..36456)
                     /locus_tag="PXE92_000277"
     CDS             complement(35737..36456)
                     /locus_tag="PXE92_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253715.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HDL5759570.1"
                     /translation="MKLKNFLTILPLAVATAVTSAETHTVEHKDKPASFNFSTEVSRT
                     VEKDVMQASVYSQKSGNSLPELKKFVSENLNRVLAEAKKHPSIEVQAEGVTNHVNYNN
                     KGNIDGWDTSGSIQLKSKDFDAMAAVLENLGKDVAIRYIDFSVSPEKMASLEDEMTLE
                     IISKFQHKADVIQKALGAKTYKLVNINIQTPNDGGRPYYEHRAMYAVSSMAQSKSMDE
                     IPLEAGKTTISATASGSVEFE"
     gene            complement(36514..37251)
                     /gene="tsaA"
                     /locus_tag="PXE92_000278"
     CDS             complement(36514..37251)
                     /gene="tsaA"
                     /locus_tag="PXE92_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HDL5759571.1"
                     /translation="MNSTSNQLTPIQLNPIGFVESPYDEKFSVPRQPNLVAEGKGILR
                     LIPPYNTPDAVRGLEKFSHIWLIFQFHHIPEREWHATVRPPRLGGNERVGVFASRATH
                     RPNPLGLSKVKLEAVVAGGSEVYLKLGSVDLVNGTPIFDIKPYIAFADSEPQAVSGFA
                     QQKPQARLAVRFSEEAKQAVEFCRNFAKFGIEQPLSFLADVIAQDPRPAYQQGKPSER
                     VYGMNLAGYNIRWQIENDTQAIVLSIE"
     gene            37431..38339
                     /locus_tag="PXE92_000279"
     CDS             37431..38339
                     /locus_tag="PXE92_000279"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HDL5759572.1"
                     /translation="MNKNSLFSIWFTTARPKTLPLALASIIVGSALAHWAGKFDVVTT
                     LLAFITTILLQILSNFANDYGDHVKGSDTKERIGPLRAIQHGVIGGEQLKKAVIILSL
                     LSFVSGVALSAYAFETVQDLFFFIGLGIVSIIAAITYTVGKKAYGYLGLGDLFVLIFF
                     GFVAVIGVFYLQAHSLPIMILLPAFGCGLLSVAVLNINNLRDINQDRQAGKNTLIVRI
                     GSQNGRKYHVALLVLAVISYLIFAISEFEHWYSFIFLLSVPLLAKHARFVYQHKDPKE
                     LYPILGQMAGLALLTNLLFSLGIVLG"
     gene            complement(38415..39401)
                     /locus_tag="PXE92_000280"
     CDS             complement(38415..39401)
                     /locus_tag="PXE92_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3298 domain-containing protein"
                     /protein_id="HDL5759573.1"
                     /translation="MKKSLLALLIGSVFLISACEDGKMTQTVLEAEKQIVQLGTELKN
                     AQADLAKKEAEVAELSGVKAENEKLKSELENAQQNTALNVEIVKIFDKKEVIKHQVDP
                     KQEFAIEESTVSAFVSLPKTNFDWLNQLLINQAYDYNEEQGRKLKNPTEEEFKKHREA
                     VYQGLVESVKTEPAIGYDDHISSAFIGQRNNIATFTMMHYTYMGGAHGMHYTQYINVD
                     LAKKAIIGLNDLISPKNQVQLKDILWENYSSVRVDENGNYNGFADKKEFRISDQFYFT
                     PHGIAFVYPPYELGAYAEGDIEVEADWYIINKLLNSEYQRGEKDGFFEELDN"
     gene            complement(39495..41366)
                     /gene="rpoD"
                     /locus_tag="PXE92_000281"
     CDS             complement(39495..41366)
                     /gene="rpoD"
                     /locus_tag="PXE92_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDL5759574.1"
                     /translation="MENQADQQLEQQSQLELLISQGREQGYLTLSEVHDHLPEELVDA
                     EQIEDIIQMINDMGIQVLEAAPDADDLLLAENIADEDVVEEATKVLSTVESELGRTTD
                     PVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCAIAEYPEALSGLLACYAQVETG
                     EMRLSDLVTAFVDPNILEEAPLEDIEAALGEDEESSDVPDVDDENEDENGDSSSDSSD
                     DSSIDPELAREKFEALRSQHEKVLLVIQKHGRTSKKSKEQIEILSHIFREFRLVPKQF
                     DLLVASMQKLMKQVRTEERQIQRYAVEYAGMKKADFLKAFQGHELSEAWIEKAINAKK
                     NAAPKLANYVDNIRVNIANLQNLEQTSGLTIAQIREIGGRISNGELKARRAKKEMVEA
                     NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT
                     RSIADQARTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMGMPEDKIRKVL
                     KIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSATAESLRMATNEVLEGLTPREA
                     KVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLDD"
     gene            complement(41625..43373)
                     /gene="dnaG"
                     /locus_tag="PXE92_000282"
     CDS             complement(41625..43373)
                     /gene="dnaG"
                     /locus_tag="PXE92_000282"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL5759575.1"
                     /translation="MKGTIPRSFIDDLIARTDIVEVINSRVKLKKAGRDYQACCPFHH
                     EKTPSFSVSQSKQFYHCFGCGVHGNVITFLMDYDKLEFPEAIEELAAMHGLEVPRENV
                     IQRDGKPQANFKTKRNLYELMEAVAKFYQQNLSHQIEPQSYLQQRGLSEEIIERFEIG
                     FAPNAFDAALRTFGQSQEDIQKLLDTGVLTKNDSGRIYDKFRNRVMLPIRDKRGRVIA
                     FGGRVLPNDEQGAKYMNSPETVIYHKGSELYGLYQALKVNETPDYLFVVEGYMDVVAL
                     AQFGVDNAVASLGTATTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQD
                     GRQLKFIFLPDGEDPDTFVRSQGKEGFEQYVAQNAKPLSDFLFDSLLADVDLSSKEGK
                     SKLAALAVPLINRIPGEMLRVYLRNILGQKLGILDPTQIEALLPTKKAAEKPLHQAVK
                     MKRTPMRLLIALLIQNPYFVKFVPDVSALASLKDPGFTLLTDIVATCQQNAGISMGGL
                     LEHYREDPQYKIVEALANWDHLELPENIERTFIDTLDFLYAKLVELRKEELIAKDRTV
                     GLTDDEKKEYALLMFQ"
     gene            complement(43527..43742)
                     /gene="rpsU"
                     /locus_tag="PXE92_000283"
     CDS             complement(43527..43742)
                     /gene="rpsU"
                     /locus_tag="PXE92_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDL5759576.1"
                     /translation="MPVIKVRENESFDVALRRFKRSCEKAGILAEVRAREFYEKPTTI
                     RKREKASLAKRHAKRNFRENARNTRLY"
     gene            complement(43890..44486)
                     /locus_tag="PXE92_000284"
     CDS             complement(43890..44486)
                     /locus_tag="PXE92_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HDL5759577.1"
                     /translation="MSLLPMNEITSLNQLDLQKSYSYADYLLWKFKERVEIIKGKIVA
                     MSPAPTRFHQRISMKMTAKFLEVFDNHQCQIYSAPFDVRFPDENGKVKTVVQPDLCVI
                     CDVSKLDERGCVGAPDLVVEILSPGNTKREMKDKYELYQEQGVKEYWIVSPETRTIQI
                     FVLENGKYIGIQPVAEDEPATSVVFPALSFSTEKLFEL"
     gene            44628..45884
                     /locus_tag="PXE92_000285"
     CDS             44628..45884
                     /locus_tag="PXE92_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HDL5759578.1"
                     /translation="MHLNFKKIDNSHIALFYNVLVATFFVTVLTFKKGYSYVPMALGI
                     IATLSFLFYRFKLKQKWLLDKEDKFFIFSLIGYFLTFAMSAIFNGDGIREIDNPIQIL
                     LLIPLIILFRLYPIKKETVLHFIPIGALVAGCIAIYQRFILNLKFPFPEIMRIQSGNI
                     AILLSLFSIAIAFYWLSKKRIKTGIAYLVFAMFGLFASILTGARGGWLAFIPICFFIL
                     FLNLRQLNKKAIFLILLALISSLSFFISKPEFGIQKRYNAAKNDIIVFLEKGNRHSSL
                     GARFDMWENALIGIREKPLLGHGSTGYETFKKKQIETKQMAKTTLRFNSLHNQYLEAF
                     VKRGVVGFMALMAILIIPFVIFAKRLKAKNREVKCMAILGIVHIISHSFFFLSQSFLA
                     HNSGSLFYFFVLILLYHLVKQNEEII"
     gene            complement(45986..46993)
                     /gene="rfbB"
                     /locus_tag="PXE92_000286"
     CDS             complement(45986..46993)
                     /gene="rfbB"
                     /locus_tag="PXE92_000286"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HDL5759579.1"
                     /translation="MIILITGGAGFIGSALVRYLIEHTPHTVINVDKLTYAGNLASLE
                     SVAHHERYHFEKADICASGQISEIFGKYQPDVVMHLAAESHVDRSISGAADFIQTNIV
                     GTYTLLEAARAYWDTLPEPRKSAFRFLHISTDEVYGDLAKSEELFTEKTPYNPSSPYS
                     ASKAASDHLARAWHRTYGLPTVITNCSNNYGAYQYPEKLIPLMILNALEGKSLPVYGN
                     GLQVRDWLFVEDHIRALYLVLQKGQIGETYNIGGHNEKTNIEVVRSICSILQEMVPNN
                     PLVVGQYADLITYVQDRPGHDFRYAIDTSKIEKELDWKPKETFESGLRKTVEWYLANR
                     N"
     gene            complement(46990..47571)
                     /locus_tag="PXE92_000287"
     CDS             complement(46990..47571)
                     /locus_tag="PXE92_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase"
                     /protein_id="HDL5759580.1"
                     /translation="MLEKIEKLIDEINKLHLAFSKDYFETGKIEKVNLKHTFAKVPTP
                     HILAYRLNLHESINDYLYRADLEGISYFYRVKTSESILDKIERFKQRSEGYPVNSILN
                     DIFGARIIVSSEVIQQVMESLDYWQEKYGLKNWYLRDKDEYVGIHIYFKNSSNFYYPW
                     ELQIWDKKDAEKNIQSHIKYKRNFVNQISYSPL"
     gene            complement(47592..48863)
                     /locus_tag="PXE92_000288"
     CDS             complement(47592..48863)
                     /locus_tag="PXE92_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDL5759581.1"
                     /translation="MSIQQKKRHSRWYERIFFSTAVQSILGVMFSSVLPAIYFWGEKF
                     NSIETRSNTIIATSLAFVMIAISLRVLMKYPGNKSASFVFSTVISWYAVLLIVLTIFR
                     FDYSNTLLGTSFILTILFCFIGYFLSRSWIIPKIALVPFGRAINLNRIQNVEWIQLSE
                     PILGEKRINSIAVDLHYPDLSAEWHKFLAKCTLNGIPVYNVRQLEESLTGRVKIRHMY
                     ENDLGSLLPSPIYSLVKRIIDIALIVATFPITLPIMTITAIAIRLESEGGAMFIQKRV
                     GQGGKEFNIYKFRSMCKDSEKDDAQFASSADMRVTRIGKFIRKTRIDELPQFFNVLKG
                     DMSLIGPRPEQTAFVDKFEEEIPFYNYRHIVKPGISGWAQVVQGYAADVDDTKVKVEH
                     DFYYIKHFSLWLDILIIFKTLKTMLTGFGAR"
     gene            complement(48867..49675)
                     /locus_tag="PXE92_000289"
                     /pseudo
     CDS             complement(48867..49675)
                     /locus_tag="PXE92_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
BASE COUNT        14426 a        11068 c         9491 g        14699 t
ORIGIN      
        1 ttattctaga aggactctaa acgtgttaaa gaaaaattat ctcactgtat caattctcct
       61 tgccattagt ggagtaggct acgctaatga aatctcttta gagactatta ctgttgatgg
      121 aaatacgcct tcaaccaaag ggaaattact aggtggtgaa ctaaatagca atgaatctgt
      181 tgttgatgaa aaaaattaaa acaaggtagt attacattag gtaacgcttt atctggtgaa
      241 ttaggcattc attcaagcca gttcggaggc ggtgcaagta ccccaattat tcgtgggcaa
      301 gagagtaaac gtgcaaaaat cttacaaaat aatggcgaaa acttagatat gtcgggaatg
      361 tctcctgatc atgcagtaac cgtagatgcg ctacttgcta aacgtattga aattttacgt
      421 ggtccaacta ctttacttta cagtgcaggt aatacggcag gtgtaattaa tgtggtagac
      481 aataaaattc caaccgctat tcccgaaaaa ggctatgagg ggcaatttgg tgtgcgtttt
      541 ggctcagcca gtaaagagcg tttaacctat gcaggctcaa cctttgccct tggaaatcat
      601 ttagccttgc gggtacaggg aatgtataac aaagcttccg aatactatgc tccacacttt
      661 acgattgaag gcaaacctta ccaccgcgta ccagatagcg atgtacaatc acaaaccggc
      721 acagtaagcc tttcttggat tggagagcga ggacatcttg gtattgctta cactgatcgc
      781 cgtgataaat atggattaat tggtcacaca cacaaatacg atcactatac tattagtatt
      841 attcgccaag ccgttatgtt tgcaaaaggt tatttacgtt tttatccgca ccttgcagaa
      901 gaaggagata ttgactataa caaccctggt atccgtttac tgcatactca tattccggga
      961 ggctcacatt atggacaaga tactcacgag cacggcaaac cttggattga tatgcactcc
     1021 aagcggtatg atattgatgg aagtttgcaa aatccacttc ctggttttga agaagccaaa
     1081 atatcagcta actatgtaga ttactatcat gatgaaaaag atggaaaaag agttgaaaat
     1141 tacttcaaga acaaaggaaa aaatctacgt ttcgaattgg ttcacaaaga gtggaaaggg
     1201 ctaaaaggag ctattggtgt gcaatatacc aaccaatcta cctcagcact tgcacttgaa
     1261 gcttcacgag ctgcaaaagt atttaataaa cagcctttac tcaataatcc aaaaacaaaa
     1321 ttatggagtc tctttgcgat tgaacgcctt aatttaggtg actttacctt tgagttaagt
     1381 gggcgggcag aacgtcaaaa aatagcaatg gattatgatg tgaaattaat tgatcgctgg
     1441 ctaggcttta atacacctat gccaaacttg gacccacata aagacaaagg ttattcttat
     1501 agctttgcaa ctcattggta tttcgcacca aaccataagt taacattaaa tgctgcacat
     1561 caagaacgtt tacctaatgc tcaggaactc tatgctcatg gtaaacacat tgctttaaat
     1621 gcatttgagg ctggcaataa aaatctaaaa aaagagcgtt ctaaccaaat tgagctatca
     1681 ttagcttatg ttggcgacaa atgggattat aaattaaatc tctaccacac ccgctatggc
     1741 aactatattt acccattaac tcttaatgat aatcgtggac ctaaatcttt taccgatgaa
     1801 tataacttga aagtgaatag atattatcaa ggcgaagctc gttttagtgg ggcagaaggc
     1861 gaaattggtt atctatttac accaaattat cgcttagccg tattcggaga ctatgtccgt
     1921 ggaaagttag tcaacttacc taatattgca atgagttaca acatttggac aggtgaagtt
     1981 gacaaatggg cttctcagcc agacatttct gcacctcgta taccaccact acgtttagga
     2041 gcaagattta atgctgactt caacctaaac tggtctggaa tgttagaata ttaccgagta
     2101 tttgctcaga aaaaagtctc gaaatacgaa caagttaccc ctggccatca tcaagtaaac
     2161 cttggcgtaa cctatagtaa tcattttaat caaacagaat accaagtatt ccttaaagtg
     2221 gataacttgc ttaatcagaa aatgtaccaa catgcctcat atctaccaca tattccacaa
     2281 atgggtagaa atgcaatgct tggaatgaat atcagttttt aatttgtaaa tctctacaaa
     2341 aatataaccg cttgtaaatt tctatctaca agcggttact ttcagtggat tttttgcaat
     2401 tagagatcgt caattaccaa gtaaatttta tttaccgggc cgtgaacgcc aactacttta
     2461 atcaactcaa tatccgcagt cgccgatggg cctgagatga tattcacaca agatggcatt
     2521 ctttcacctc gttgggcttt ttcgtgcaga atttgtgcaa gctgtgccac acgaggtaac
     2581 actgtacttt tgcgtaacac aaccaccgat ttttcgggca ataagctcac tgaacgccca
     2641 aattctttat cggaaaacag tacaataccg ccagactctg ccaagccata ttcaccgtaa
     2701 accacaccga tattagcagt tctggctttt tcaaagttgg tttcagcttg gttgaaatcc
     2761 cacacatagc tgtcttcgta ttttgcttga atggctgcgg taatcccaag atcctttaaa
     2821 cgttgatcgt tattcacgat cacactcgcc ccgccatatt tttcacaaat atcaataatg
     2881 gcttgtggta aatccgcctc ttttgcctct actacatctg ccatcatcac tcgggcaaaa
     2941 tcgataaact cttggcaaag ttgtggttga gggcgatcgg ttaaacgggt aatcgcgtgg
     3001 ttgttttcca acacaggaat tggctcaggc acattttggc gtggtctgcc catacgctgt
     3061 gccaatttat ttaagaaatt ttcacgattt tgtaaatcca ttttcttatc ctctgttatt
     3121 aaaccattca cggaaacttt cgccttcggc agtcggtaaa tcacgggctt tcgtccattc
     3181 acctaacgcc ccaaaattca ccggtgcttt gccgttttta atcaatttgc ttgccacttt
     3241 cgcccccact tttacgccga ctttccaaag ggttgggtgt gagttagcga agttaaagcc
     3301 aaaaatagac aagcgttctg ccattggcgt taagccggca tccgcaattt tctcacggtg
     3361 ttttaagata agctgtgcca gtggaatttt cactggacaa acactgttac aagcggtaca
     3421 aagtgagcaa gcatacggca attctttaaa ctcttcgtag ccaccgagca atggcgaaat
     3481 aactgaacca atcgggcccg gatagattga accatagccg tgaccgccaa tttggcgata
     3541 cgccgggcaa gtgttcaaac atgcaccaca gcggatacaa cgcaacactt cttggaattc
     3601 gctttctaag attttagaac gaccgttatc gacaatgacc aagtggaact cttccggacc
     3661 atcggtttcg ccttcaagtc taggacctgt cagccaagtg ttgtaagcgg tgagttttgc
     3721 ccctaccgca ctgcgagcca gcatggtaat taatacatca acctctttaa aggttggggc
     3781 gatacgttcc atacccatta ctgcaatatg cgttttcggc acagttgttg ccatacgcag
     3841 attaccttcg ttggtcacta aacaaaccga gccggtttcc ggcaccgcaa agttacagcc
     3901 tgaaataccg atgtctgcct ctaagaaatc ttcacggatt ttttggcgga cgaatgcagt
     3961 catctcttca ggtgtttccg aaccttgata acctagcaca tcgtgcattt cttggcggat
     4021 tctgtggcga tctttgtgga ttgcaggtac aacaatatga gaaggtttat cgcccacaat
     4081 ttgcaataaa tattcgccca aatcggtttc aaccacttta atgccttctg cttctaaaac
     4141 gtggttcatc ccaatctctt cggttaccat cgacttcgat tttacgattt tcttcgcatt
     4201 tttagctttc gccacgtttt tgatgtaatc agtggcttct tcggcggttt cggcaaagaa
     4261 aacgtgtccg ccgttttggg tgactttttc gcttaattgg tagagataag cgtctaaatt
     4321 ggctaaaacg tggttacgaa ttgctttcgc atcatcacgc cactcttccc agttgcccag
     4381 ctcatccacc atacgctgac ggtttgcacc gattgtttcc tgagccttaa ctaaggcttt
     4441 acgcacaatc tcgttattaa cttgctgctc aacacgttgt ttaaacggca gggtgttagt
     4501 ttgtaaataa gacatcttat tttcctccct gcattaacac ttcggcaatg tgcatcactt
     4561 tgattggctt accttcacgg cttaaacgac cgccaatgtt catcaagcag cttacatctg
     4621 ccccgattaa ataatccggc tcatcggtat ctacatttgc gactttctct tttaccatct
     4681 cgccggaaat ttctgccatt ttgaccgaga atgtgccacc aaaaccacag caagtttctt
     4741 ggtttttgat tggtaataac tctaaccctt taacgtgctg taataaagca ataggctcat
     4801 ctttaatccc cagcttacgg aataagctgc aagacgggtg ataaactgct ttgcccggta
     4861 aataagcccc aacatctttc acgcccagtt tgttcacaat aaaatcggtt aaatcataga
     4921 aacgatcagc cactttcttc gcacgttctg cccattcttt ttcgccaaag cgttcaaaat
     4981 gatccggata ggttttgatc gcatatacac aagaacctgc cggggcgaca atcgggtaat
     5041 cattagcttc aaaggtttca accaagtttt tcatacctgc taaagcttgc ttagtgtaac
     5101 cgctgttgat cgcaggttgt ccacagcaac cttgtttttc taagaaagtg attttacaac
     5161 ctaatttttc caataaaagc acagtatttt ttgcaacccc tgctttcatt acatctgcaa
     5221 tgcaggttac gtaaaaatta acgttcataa agaactccca cagtaaatat aaataagaat
     5281 taaactcaaa aaatgccgtt ctaagacggc gaaaggaaga ggtggatttg caaaaaattt
     5341 gctaaatctc accgcttcct ttctaaatca agtaagctga ttattaactc attataggtt
     5401 atagaacata ggtactataa acaatgccga aatcgcagca ataacgccat acacgaacat
     5461 tggcacggct gttttcttaa taatattgcc ttcttgtttc tcaatgccgg taacagaaca
     5521 cacagccacg atgttgttaa tacacaccat attccccatt gcaccaccaa ctgattgcaa
     5581 tgcaagaatt aaggtaacag ataacccgac ttgctgtgcc gttgcatatt gtactgttcc
     5641 gaaggttaag ttagataccg tatttgaccc tgagaagaac gcaccaattg cacctaagaa
     5701 cgaggcaaat aatgtccaag attgaccggt aaattctgcg aagtttttac caatgatctg
     5761 aaccattgag tctacaccac caattaacat taattttacc atcacaatgg cacctaaaag
     5821 tgctaagaat ggttttttca cttgtttaaa tgaagtgcca aaaatctctt gagtattttt
     5881 acctgatacc gagaaaatcg gtaagcaaat taatacggtc acaacaaatg gaatcaacgc
     5941 aggaacatac agtaatttat agctagttgc tacattcgta cctaaaatat ttttcagtgc
     6001 aaaaattaag ccttggctaa tttcaaagtt agcgaaacca agcgaactga caatccaagc
     6061 tgttgcatca tttagcattg cttttaatgg aagttgctga atacgggtga ttaccaaaat
     6121 gaagatcagt aaccctgttg gtaataatgc ttttgccact tcaccaaagg tcgctttatc
     6181 gccgtcaagg tggttctcgc ttttcgctaa accaataccc atatttgcta cccagactga
     6241 caccaataaa ccaatcgccc cggcaactaa tgatgggaat tcgtagttaa attgagcaat
     6301 aatgaagtaa ggaatgacac aggcaaaaat gctgatataa ataaacacga tattttgacg
     6361 aatttctttc cagctcacaa ttaaacgcaa tgccataact ggaataataa acgcagcaat
     6421 agagtggatc agtgcagtaa tagaaccaat ttcaagcact tgtgcatcgg ttagtaaacc
     6481 atcttttaat aatggtccca taccaaacca agttggtgtg ccaaccgcac caaatgacac
     6541 cggcacagag ttcattacta aggctaacat tgccacttgt aacggtttaa agcctaaacc
     6601 aaccagaatt ggagctgcaa ttgccgccgg cgtaccgaaa cctgatgcgc cttcaatcat
     6661 aaatgcaaat gcccaaccga taatcatcaa ctgtgccacc ggattcgggt taattgtccc
     6721 taaccattta cgcatagtgt tggttgcacc tgaaacttca gagaaacggt taaataaaat
     6781 cgccccgaaa ataacggtaa ttggggttaa tacatcacct aaaccggcaa taatattggc
     6841 aaagattaac gtggtatcat taccaaaata ggtaagctga agcacaaaaa ttaataacgc
     6901 cgtaagtggt aaagccacat aagacggtaa cgcgttacgt tttaccatta aataaatgag
     6961 caaaacaatt ggaaatacgc tcaggaatag agccatactg cacctcttta tatgattata
     7021 aaatgaccta actggtcgga taggtgcgaa ttgtactctt aaaaaaaact aatgtaacta
     7081 ggttgttaca attttgtgat ctagctcgca tttttaatga ttgtatggtt aaaaaagagc
     7141 catatttatt ttcatttaat acttaatagt tagccctatt taagacattt ttaccgaatc
     7201 gagcaatatg caattaatta acaaaaaaag gccgcttgta gatcacagat caacaagcgg
     7261 tcttttttag gcaaaaattt gcaaattaaa cattgaaacg gaagtgcatt acatcgccgt
     7321 cttgaacaat ataatcttta ccttccaaac gccatttacc cgcttctttt gcaccggctt
     7381 cacctttatt gtctatgaag tcttggtaag caattacttc cgcacgaata aagcctttct
     7441 caaagtcagt gtgaatcacg gctgctgctt ttggagcggt tgcacctacc gaaaccgtcc
     7501 acgcacgcac ttcttttacc cctgcggtaa agtaggtttg taagttaagt aaacggtagc
     7561 ctgcacgaat aacacggttt aagcccggct cttcaatgcc taaatcttgt agaaattcca
     7621 ctttttcttc gtcatcaagc tcggcaattt ccgattcaat cgctgcacac accggtacaa
     7681 ccaccgcccc ttctttttcg gcaatttcac gcacacggtc aagataaggg ttattttcaa
     7741 aaccgtcttc gttcacgttg gcaatataca ttgtcggttt taaagttaag aagttgtagc
     7801 ccttaatagc gtgcagttca tccttatcta aatctaccga acgaatcata ccggcatttt
     7861 caagcacagg taggattttt tccataatcg ataattcaaa ttttgcgtct ttatcgccac
     7921 ctttcgcacg tttttgtaaa cgctgaatgg cacgctcgca actgtctaaa tcggcaagtg
     7981 ccaattcggt attgatgatt tcaatatcat cagctgggtc aattttcccc gcaacgtgaa
     8041 cgatgtcatc attttcaaaa caacgcacaa cgtggccaat cgcatcagtt tcacgaatat
     8101 tggctaagaa tttattacct aaaccttcgc ctttgcttgc acctgccact aagccggcaa
     8161 tatccacaaa ttccattgta gttggtaaca ctcgctcagg tttcacaatt tccgccaacg
     8221 catctaagcg agggtcaggc attggtacca caccggtatt tggctcaatc gtacagaacg
     8281 gatagtttgc tgcctcaata cctgctttag ttaatgcatt gaaaagggtc gatttaccga
     8341 catttggtaa acccacaata ccacatttaa atcccatttt ttgttcctta gaattcccct
     8401 ctccccttgc gggagaggga taaatttgag cttcgttcag aagcgaaaat gagggagagg
     8461 gcgaaattgc aataatttcc tcaaatatga ccgctcccct ctctctgaaa aatacttctg
     8521 aacgaagtat ttttcggtct ctctcccaca agggagagag ttttaatttg ctttaaaact
     8581 atttaaacgg ttagttgcct taaccattcc gtctttaaat aaaacttcta cgcaacgtgc
     8641 ggcttcatca accgcactat tcagtaatgt ctgatcgctt ggtgaaggct tgcccagcac
     8701 ataattcgcc actaagtctt tatgccccgg gtgtccaata ccaattcgca cacggtaaaa
     8761 ctctttatta ttgccaaggg cggcaataat atctttcaag ccgttatgac caccgtgtcc
     8821 gccgcctttt ttcaatttca ccgaaccggg tggtaaatcc aattcatcgt gagcgaccaa
     8881 aatttcttcc ggtttaatcc gataaaaatt ggctaacgct cccactgctt taccacttaa
     8941 attcataaaa gtagtcggca ctaataaacg gacttcgcct tgagcggtat taatttttgc
     9001 tactttgcca aaatatttcg gctcttcttt taggctaacg ttatatattc gggcaagttc
     9061 gttaatcagc cactcgcctg cattatggcg ggtttcttca tattttaccc ccgggttcgc
     9121 cagcccgaca attaatttaa tttctgacac aatcttgtct caattcattt aatttaaaag
     9181 gcagtatttt agagaaaaac cgctattttc tcaaggcaac cattaatcat attgtctata
     9241 cggatttggt acgcattgat acttcgctaa catcgattca gtgaaatcgg tgcgtgaagc
     9301 agcgttatca ttgtttaaac taaccacacc aattcgcttg cctctgcaat cccctttagc
     9361 aataaaggca agattataac ccgcctcacg ggtataacct gtcttactca ctaatgcctg
     9421 ataggattgg gaacgaacca tactgttggt gtttttcata gagaaataac gaccacctgc
     9481 ataaacactc actaatggcg aattagacaa ttgctgaatt tcaggcttac ttgccgcata
     9541 gcctgccaat ttagcaagat caaccaccgt tgaaacatta tccgaagata agcctgagct
     9601 atcaccaaag taggtttgag tcataccgat ttcacgggct ttgctgttca ttcgagccaa
     9661 aaattgggct ttattcaaat gtgttgcgtg ggcaagggcg tgagcggcat agttatcgga
     9721 gcgaactagc atcgctttta acaattcact acaggcaatg ttaagatttt tcggcaatgg
     9781 gctggtcgtg ccttttaaga aatcagcatc tgacggcaaa atttgggttt ggcaactcgc
     9841 cccatagcgg ttttcttcta agaaaacgac tgctgtcatt aattttgtga ccgaagcaat
     9901 cgggcgaact aaattgaaat tcttaccttc caaaaatttc ttttggttta agtcaaacac
     9961 cacataagcg gaattttcgg ttggaatata agcagcggtt gctttaatcc gtggtgtgct
    10021 tttccttttt gccggctggg aggaacaggc gcttaacacc agagccgcaa tcataacagg
    10081 aataaatttt ttcatcataa tagattcatc gataataaag tcaaagctgg ttattctacc
    10141 ctgtttccaa aattgtgcca aagcaagcgg tcgattttta caaaattttt gcaaatctag
    10201 ccgattttgc aaaatttccg ccaaatttaa ccgcttgccc tctcgcctca aatcagcgaa
    10261 aataacgctt aattttttgg cggactttcc gcccttttta ttttaattgg ttgagaaaaa
    10321 tgtcataccc acaagaagtt aataaacgtc gcacctttgc gattatttcc caccccgatg
    10381 cgggtaaaac caccattacc gaaaaagtat tgctctacgg aaatgcaatc caaactgccg
    10441 gctcggtaaa aggcaaaggc tcggcacaac acgctaaatc cgactggatg gagatggaaa
    10501 aacaacgtgg aatttcgatt accacctccg tgatgcagtt cccgtacaat gattgcttgg
    10561 taaacttact cgatacaccg gggcacgaag acttctcgga agatacttat cgtactttga
    10621 ctgcggtaga tagctgctta atggttatcg actcggcaaa aggggttgag gaacgcacca
    10681 ttaaattaat ggaagtgacc cgcttgcgtg atacgccaat cctaaccttt atgaacaagc
    10741 tagaccgtga tattcgtgac ccgatggagc tgttagatga agtggaaagc gtgctgaaaa
    10801 tcaaatgtgc gccgatcact tggccgattg gttgcggaaa attgtttaaa ggggtatatc
    10861 acctttacaa ggacgaaacc tacttatacc aaaccggaca aggtcatacc attcaagaag
    10921 tacgagtggt taaaggctta aataatccgg aactggatca agccgttggc gatgatttag
    10981 cccagcagtt gcgtgatgaa ttagagctgg tacaaggcgc ttcgcacgaa ttcgatcaca
    11041 ccgaatttat caaaggcgag ctgacaccgg ttttctttgg cactgcactg ggtaacttcg
    11101 gggtcaatca tttccttgac ggtttaaccg aatgggcacc ggcaccacaa gcccgtcaat
    11161 cggacgaacg tgaagtttca ccaagcgagg aaaaattcag cggtttcgta tttaaaattc
    11221 aagcgaatat ggatccgaaa caccgagatc gagttgcttt tatgcgtgtc gtttcaggta
    11281 aatatgaaaa aggaatgaag cttaaacacg tccgtatcgg caaagatgtg gtgatctccg
    11341 atgccttaac ctttatggcg ggcgaccgtt cacaagccga agaagcctac gccggcgata
    11401 ttatcggctt gcacaatcac ggcacgatcc aaattggtga tactttcacc caaggcgaaa
    11461 atttcaaatt caccggtatt ccgaacttcg cccctgagct gttccgccga atccgcctgc
    11521 gtgatccgct caaacagaaa caactgctca aaggcttggt acaactttcc gaagagggtg
    11581 cggtgcaagt attccgtccg ttaatcaaca acgatttgat cgtgggagcg gttggggtgc
    11641 tacagtttga tgtggtggtt tcacggctga aaaccgaata cggtgtagag gcaatttatg
    11701 aaaccgtaaa cgttgccaca gcccgttggg tcgaaggcaa agatgccaaa aaatttgaag
    11761 agttcaaacg caaaaacgag gcaaaccttg ccctagacgg cggagacaac ctcacctaca
    11821 ttgctccgac aatggtgaac ttaaacctcg cccaagaacg ttaccctgac gtacagttct
    11881 ttaaaacgag agagcactaa aaccaatagg ggcgaaaaat ctttcgcccc tacaaataaa
    11941 gcacaagcgg tcaatttttt ttccgaattt tacaatacta ggcattctgt tcctcaaata
    12001 gcctaaatat tcccctatca acaatcctta tcttgagatt attctgccta ttaattaacc
    12061 actcaaaaat accctcgcag aaaactctac tttttttatg gaaatatgct aaagttcgcc
    12121 aatattcata gccctgattt ttttatggag aaaataaaat gaaaaaatgg ttgattccat
    12181 taactgtcgc agcgttctgt gtttctgctt gcgatgataa gaacagcact caagcaaccg
    12241 cagaaaaacc gcaagtagag aatactcaat cgcaaaaaaa tgcggaaata ttaccgcttg
    12301 caaccgtggt tgccccatgg gaaatcaata gccttgaccc gaatcaatca ggcgtaattt
    12361 tccagcgtat gaacttagcg gaaacattgg tcgaagccga tcttaacggg aatttaattc
    12421 cggcattggc cactgactgg cgcagtaacg aagagggaac aatctggcgt tttaccttgc
    12481 gtgaaggggt aaaattccat aacgatcaag tacttaccgc acaagcagtg gtaaatagtt
    12541 tgaatatcgc aaaaagcaaa ccgggtgtgt tagcaaaagc ctttatcaag gaaattcgag
    12601 cggtagataa caaagtggaa attgagctaa ctaaagcttt tgtgccgttt cctccctttt
    12661 taacacacta caccgcctta attttggcac ctgaaagcta taatgaaaaa ggcgaagtga
    12721 cccaaattat cggtacaggt gcgtttaaac ccacaaaaat tgaagctccg cagaaattgg
    12781 aagcggtgca atttgagggc tattggggca aaaaaccgca agttcagcaa gccaattatt
    12841 tagccagcag ccgtagcgaa acccgtatgt taatggcaca aagcgagccg tcatcactgg
    12901 tatttaattt agataccgcc agtgtagcaa ggctgaaagc cgatcctaac ctgcaattag
    12961 tcagcggatc tattgcccgt actattcagt tgaaaatgga cgtggcaaag ccgtttttta
    13021 acgacttagc gattcgccaa gccttatcgc aagcgattaa tcgcaaggcg attgctgagc
    13081 aggtcttaaa aattgagaac ggagctgccg atcaaatttt accgaaagcc tttgccgact
    13141 ggcgtgttga taccgcagaa caagtggtcg atattgcaaa aattaaacaa aatctgaccg
    13201 cttccggcta tacctttgat gaacaaggtc gcttaaccaa agacggcaaa ccgtttagct
    13261 ttaccatgcg caccttctca gatcgtcctg aattaccggt gattgctact atcttacaag
    13321 ctcaatggaa acaaattggc gtggaagtga atgtttcggt gggtaatttc agcgaaattc
    13381 cggcggggca tcaagacggc agtttagaaa tggctcttta tgccttaaat tatggcaaaa
    13441 ccttagatcc atatggcgta attgcctccg acttcgccaa tggtggcagt gattgggggg
    13501 taatgaattg gcaaaatact gaggtagaca atgcagtcaa atcgctcgaa accgagcgtg
    13561 acccgcaaaa agcgaaagca ttaaagcaaa cggttagcaa aattatttac aatgatttgc
    13621 caatcattcc ggtggtttat taccaacaaa atgtggtggc acataaagaa gtaaaaaatg
    13681 tgacgctaga tccatttgaa agacgcttct ttttggagtt attaagtaag tagtttaatt
    13741 caaaatactc ctcgctttag aaaagggaag gtaggatttt tcagtagtaa tttgcgctct
    13801 taggtgaata aatagtgaca gaattatcgt tttttctcat ttttcaccta ttttctccgc
    13861 ttatttcttc tgccaaatct tcccttcccc tctttgctaa agagggggat cagaacgcat
    13921 aaaatcatct ttttaataaa tgaaataata caatgcacaa aattctcttc cgccgtctta
    13981 tccaaattct actggtgatt tggtcggttg gcacactcac atttatcctc acccgccaac
    14041 tttcgggtga tatggcatac cgcattgctg ccagccgcta tggttatgat caagcagata
    14101 gtgctgctgc tgaggctgtg cgtgccgagc tgggattaga ccaaccttgg tggcaaagct
    14161 acttcagctg gctaagtgac ttggctcaat ttaatttagg caaatcattg gtgaccggtg
    14221 atccggtctg gtctgaaatt cagcaccaat tcgggcatac cttaagcctt gcgattgtgg
    14281 cacttatctt agcaatcctt atcgggcctc cgctcggttt gttagccgcc cgtaagccaa
    14341 acggcttttt tgaccgcttg acactggtat tcagtaccct gtttcgctcc gtgccggcat
    14401 ttattattgc gattggcttg attacgctgt tttccgctca actaaaatgg ctacctgccg
    14461 gcggatacgg ctgttggcaa cattttatct tgcctgcctt aacgcttgcg attggcttga
    14521 gtacggtttc ggtacgagtc acccgttctg caatggttca ggtaaaaggc tcagaatttt
    14581 accaattttc acaattaaaa ggcttaagcc gttggcatac ctttttacgt cacggtttgc
    14641 cgaatattgc cgtgccggtc attgcctacc acgcagtaca attagtttat ttaattgaag
    14701 gcgttgtggt ggtcgaaagc ctatttgctt ggcccggcag cggacacgca ctggttcacg
    14761 ccatcattgc ccgtgatgtg ccgatgattc aaggtacaac gctcgtgatg ggcggattgt
    14821 ttgttgtatt aaacaccatt gccgatctat taagtgcttg gattgaccca cgaattaagc
    14881 gataggacat caagatgaaa atttcaattt cacaatattt aggcggcact attctccttg
    14941 caatgttggg atttgccttt ttacagcctt atttttaccc gatggatatt ggctttcaag
    15001 atttaaccaa tatcctttcc aatccaaatg aaatcgcttg gttcggcacc gatcatctcg
    15061 ggcgggatat gcttgcccgt cttgcctctg ctattcgtct ttcgtttggc ttatcactgt
    15121 ttagcgtgat ttgtgcctta attgcaggct taattaccgg cattatggca ggctttttcg
    15181 gtggctggat tgaccgcatt ttcagcttta tttgtgatct agtgatggca ctccccggct
    15241 tacttttagt attgctcttt gccgcccttt ctcccggctc attttggacg ctctatttag
    15301 ggatttcatt ggtaatgtgg gtggaatttt tccgtgtgat ccgctctatc agttcaacaa
    15361 tggcaaacag ctcggaaatt caagcctcac gcctaatggg aatgggctgg ttttatagct
    15421 tcaaacgcca cttattgccc cgtttattac cgatgattgc cactttatcg gcattctcgc
    15481 tcggcaatgc gattttagct ctcgccacac ttggctttgt cagcgtaggg cttcgcccgc
    15541 ctacagcaga attaggcttg atgatgaccg aactattccc ttactactac gaagcaccgc
    15601 tgatattttt gcaaccagtg gttgccgttt tcttaatggt actcagctta caattattgt
    15661 ctagaaaaat taaataatgc gtaggggcag gtcctgtgcc tgcccaaaat tcttattata
    15721 tttatgggcg ggcacagggc ccgcccctac agtaataaaa tgaagatgaa attactcgat
    15781 atccaaaacc tatctgttga aaccgaaaac agattacagc tggtcgaacc gattagccta
    15841 caattaaagg caggaaaaaa tattactatc ttaggcgaaa ccggctcagg caaaagcctg
    15901 ctgattcaag cgattatggg ggcgttaccc gacggcttaa tcgcaagcgg tgaaatttcg
    15961 gtaaaaaatt gcaaaatttc caccgaatcc gaccgcttgc aaacattgtg gggtaaaacc
    16021 ttggtaatgc tgccacaaga gcctcgccgc tcgcttaatc cgattatggc aatcggcaag
    16081 cagttgtggg aaagttttca ctatgtggca ggcaaaccat catctcaagc caaaacggaa
    16141 agcaaagcct atttagccaa acttgggctg ggcgaatcgg ttgaaaacta cccacaccag
    16201 ctttccggtg gaatggctca acgtgcctct tttgcgattg caactgccgc cggtggcaaa
    16261 attttacttg ccgatgagcc gaccaaaggg cttgacccaa tcagtaaagg caaagtgatt
    16321 gaactgttaa aatccgccta ccaaaacggt ggaggcttgc tcaccattac tcacgatatt
    16381 gaagttgccg agcaactcgg tggcactatt ttagtgatga aaaaaggcga actgttggag
    16441 caaggtgagg caaaagcgtt gttaaataac ccacaacacc cttacaccaa agcacttatc
    16501 agtgccgatc caaaacattg gcaaccattg caagatctgc aaaatttaag ccaaaaacaa
    16561 ccgcttgttt cggttaaaaa tttgagtatt gcccgtggta agaaaacgct gtttagcaac
    16621 ctttcctttg acttacacaa aggcgaagtg cttgggattg tcgggcatag tgggattggc
    16681 aaaagctcgc ttgccgatgt actttgtggt ttgcttaagc cgaaatcggg cgaggttgtg
    16741 tggcacagcc acagccataa aaaacaccaa gtgttgaagc tttaccaaga cccaccggaa
    16801 gcctttgctc cgaatgtcag tctaaaaacc ttgcttgatg atgtgattaa caagcaccaa
    16861 ttagatcgac tgccgattcc aagtttactg caacaacttt cgctcaaccc agaaattttg
    16921 caacgcaatg cggaaaatgt ctccggcggc gagctacaac gagtagcaat tttgcgagcc
    16981 ttgctcttag aaccggtact actgtttgcc gatgaagtca cttctcggct tgacccaatc
    17041 acacaacaag aaacgataga attgctgatc aaccagtgcc gagcgagaaa ttgcagtctg
    17101 attttggtca gtcacgatcc ttatctaatt gagaaatcgt gcgataaagt gattaatttg
    17161 gaagagtatg tgggctaaca agcggttcaa tttctgagat tttttgcggc tctaaaaaca
    17221 aaaatgcgaa gacatcagtt cttcgcattt ttcttactta ttccttattg cccagccagc
    17281 ttctgccgta caatttcaaa cagacagacc ccggttgcaa ctgagacatt caaagaagat
    17341 actgagcccg ccattggaat gctgataagc tggtcgcaat gctcacgggt aaggcgacgc
    17401 attccgtcgc cttctgcccc cataactaac gcaatcgagc cggttaattt tgcttcataa
    17461 atgcccgatt ccgcctcacc tgccgtgccg acaatccaga cattatgccg ttcttgtaaa
    17521 tctcgcattg tgcgagccag attggtaact cgaatcagtg gcatcacttc cgctgcccca
    17581 caggcgactt tgcgagcggt tggtgtaagc tgagcagatt tatctttcgg cacaataacc
    17641 gcatcaaccc ctgccgcatc agcggtacgc aaacaagccc ctaggttgtg agggtcggtc
    17701 acgccatcta aaatcaacaa gagtggattt ttcttttggc ttaagatcgc ctctaaatcg
    17761 tgttcattca gctctttttg tggcacgact ctggcaataa tcccttgatg cacttcacct
    17821 tgcgatttgt tatctaaggt ttggcggttc acttgttgaa ttgccacccc taaacgttgt
    17881 aattcattta atagtggcat taagcgttta tcttcacgcc cttttagcac cagcacttca
    17941 attaaacgct caggtgcatt atccaaaaag gctttcactg cgtgaatgcc ataaatttgt
    18001 tcgctcatat tttatcctta ataattgggc gaacccatca gctcgcccat ataaatacct
    18061 aactaaagca acatcttcac aattttatcc aacttaaccc tgccgaattt tttcagcaat
    18121 ttacgcacat tttcagggta atcggttaaa acttccaaat cactgtagtg agttaaaatc
    18181 tgcgtatgtt ggcaaatttg gtttaactcc gtttctgctt tttcacttaa ttgatgttga
    18241 ggatcggaaa ttaaaattgc attttcggca tctaaccgcc acgctcttgg gttaaggtta
    18301 ttgccggtca gcaaaatata gcggttatcc acccaaaccc cttttaagtg gtagctgttt
    18361 tcgccatctt tccataagcg aatggttaac tgtttatttt gtacataacc gtccaaccgt
    18421 tttgcaaagg ctcgtaagtt cttttcatac aaataaggca gagccgatgc catcgtgaat
    18481 ttttcgtccg gcttggtgta gaaatcatta gcggttttat cccccacaat aatttcaacc
    18541 gatttgccgt ttgccaatag ccattcaata cgggttctca gagaatgcgg aaaattaaaa
    18601 tacggagtgc aaatcgttaa tttctgctca gtttgataaa acaacgcttc aatcacttta
    18661 tttaactgat tcttacgtcg ccctaagcct actaaaggag aaaccgctaa gcgaccattt
    18721 tcagcaacac cgttaaataa atacgcttcc cgacttaatt gtttgcggaa atgcttaatt
    18781 tgcgcacgaa tttcagccgt tttcgggcga ttttccgtat ctaaacgttt taccgcttca
    18841 ttggttaaaa gatgctgttg aataaacgtc acccagctat cggcaagaac tttattttca
    18901 atgacgtggt aacggtcata acggtaacgt tcaaattgat gcaaatacac attattaatg
    18961 cttgctccgc tatacaaaat cgtatcgtca aatacgaagc ctttcaaatg caatacacca
    19021 aacacttctc gtccgttaat cgacacaccg taaaaggcaa tctcttgccc tgccggtaaa
    19081 ccttgttcgt atttaacttt tgcataccag tcggcgttag ataaattctc tgcctcacca
    19141 atacgcccac gttgggctcg gtgccaatca accaaaatgt taatttccag ttcaggatta
    19201 tttcgcttcg cttgatataa agcagctaat acttcctgcc cggcttcatc tttttcaaag
    19261 taaagagcgg ttatataaat acgctttttt gccgtttgaa tcagctgtaa aatttgttgt
    19321 ttaaacgctt tgctcgaggc gagaaactga acctgctctg ccacttgtgg taagtatggc
    19381 aggcttttca ataggtattc agctttacgt tgtttgttca aaattaacat cattgattcc
    19441 aaaattttca atcgttgcct gctattttac actgaaatcg ccaataaagc gattttcgct
    19501 taacggcatt gatagctggt caaacgatta ggatcttctc cggtttgata aattgcgact
    19561 ttcggataag cacaaagcgg gatctgcttg gctttattag ggtaaagctc accggctttg
    19621 gcggcaatac tttccggctc cagtcctttc tcaacccaat tttcaagggc agtgagcata
    19681 tcaaaatcat tcaccgttgc ccctcgccca caatggttca ttgccgacac gaaaaacaat
    19741 tttgcaaaat gttgcggatt ttcgaccgct tgttgtaggc tttgatacca atttttgaga
    19801 tcaactgccg aaaaaatcgg gtctgaaacg ccttgataaa tcagcatttt gccaccgttc
    19861 tgcttaaaag cggataaatc aacttgatct gtatcgtgaa tgctccctac cgctttcact
    19921 tgttcgctgg cttgatccaa atctacgctg agtggatcac ggctcggcac tctgggggct
    19981 aaatagtaat gggtcaaact tttcaatccc attttaaaac taatgctgtt gggctgagcg
    20041 gtttggctat cacctaattt ccaatcccgc cagcctttag cgttaatgcc ggaatcatac
    20101 gcccaagggc tataaatcag ctcgcctcga ctgtttttcg ccccctcgaa aatcgttttg
    20161 attaaagcga cttttttctg ccccagttgc tttgccacca tttccggctg gaaatcacac
    20221 tgttcccacg cattaattaa accgtctgct aagccgtcta acttatcgca acgtgttaat
    20281 acgccattgg caatcacatc taaatcttgt tgagtgaggg cttgggataa aattttgtcg
    20341 ccatcaccat tcttcggagc aactgccaac aaggctcgat tatcccatac ttccgccaag
    20401 actgaacggg aaacccgaaa gccggggctg cctgcaatca caccgtcaaa ttcctgtgga
    20461 taacgcattg ccgccatcat cgcctcacga ccaccattcg agcagcccat aatgtaattg
    20521 tgcttgctcg gttttcggta aaattcggca atcaactgct tggcaaccgt ggtcactttg
    20581 ccgatagagg cataggcata atttgagcga gcttcgggat ctgcggtaaa cactaaatct
    20641 cgagtggcgt gaccactgtc gttactcact actgcatagc ctctgtttaa gccatttgca
    20701 ccactcgccc cgtgcggata gagcttacca atggcaggga aaatcacccc acctacaccg
    20761 cccgccccct gaaataagaa tttttcattc cattgttcgg gtaaacgtag ctcaaattga
    20821 ataccgtaag gaacattatc cacctccacc cgttttccaa tttcaccttg tactaaacag
    20881 taagccggca actcagcaga tttctcaacc cattcagctt tataaatagc cgttttttcc
    20941 ggcgagttag attttaacgc gacacattgt tcagccatag aattagccaa agcagtgtga
    21001 gaaaaaacgg agagaaaaat aaaaagaaaa gcgattattt tcatcattta catcaataca
    21061 agcggttatt tttccgaaaa tttttgcaaa ttttaaactg agtgtctatc tatcgctgga
    21121 aaagctaagg cagagtttcc tctgccttag aaagatgaat tgaattacat tttaagcaaa
    21181 caagcgtttt tcgccttcgc cggctacgtt ttccacacaa cgtccgcaaa cttcttcgtg
    21241 gccagagtgc gagccgatgt cggtagcata atgccagcaa cgagggcatt tctcaccatc
    21301 tgcattttcc acttttactg cgagtccggc taattcgcct tccgcaatat ctgcttccgc
    21361 cagtggttta acaatcgctt gtgaggtaat cagcacaaag cgtaattcat tgccaagttg
    21421 ttctaataac gggcgaattt catcattggc gaataccgtc accttggctt ctaagccagc
    21481 accaattact ttgtctttac gggcttgttc cagcacacgg ttgacttccg cacgcacttt
    21541 taagatttgt tgccagtaag catcatctaa tttatcttgc tcggttaaac cgaataatcc
    21601 ggtgtagaat tcttcggtaa agacaaattc acttctgcct tccacctgcg gtaagtagcc
    21661 ccaaatttca tcggctgtga aggataaaat cggtgcaatc caacgtacta acgcttctgc
    21721 aatatgccat aacgctgttt ggcagctacg gcgggcaagg ctgtcggctt tggtggtgta
    21781 ttggcggtct ttgataatat ctaagtagaa agaccccatt tcaatcgagc agaaacgcat
    21841 taaacgctgt actaccgtgt ggaattggta gttatcatag gcttctttga tgtcgttttg
    21901 agcctctaaa gcacaagcca ccgcccagcg gtctaaggcg atcatctctt gcggttgaac
    21961 taaatcactt tttggatcga aaccgttcaa gttcgccaat aagaaacggg ctgtgttacg
    22021 aatacggcgg tatgattccc cggcactgtt taaaatattg tgcgaaacgg taatctcacc
    22081 ggtatagtcg gtggaggcaa cccataagcg taaaatatct gcaccgtttt tgttccacac
    22141 ttcacttggc acaattacgt tgccaagcga tttggacatt tttctgcctt tctcatctac
    22201 ggtaaaaccg tgagttagca cttgtttgta tggtgctttg ccgttagtag cagtggaaag
    22261 cattaaagat gacataaacc aaccacgatg ttggtctgaa ccttctaaat acatatccgc
    22321 tgaattgccg ttaaattcag ggcgttgttc tacaacagag gcataggtcg atcctgaatc
    22381 aaaccacacg tctaaggtat ccggcacttt gcggtaatct ttggcttctt caccgagcaa
    22441 ttccgcagga tctaaatccc accacgcttg aatgcctttt tcttctacac gtttcgccac
    22501 ttcttcaatt aattctaaag tgcgaggatg taattcttcg gtttcattat gcacaaacat
    22561 cgccattggc acgccccaag tacgttggcg tgaaatacac cagtctgggc ggtttgccac
    22621 catcgtatca atacgagctt caccccagct tgggatccaa cgcaccgatt tgatttctcc
    22681 tagtgcttgc tggcgtaagc cttgggtttc cattccgata aaccattgtg gggtagcacg
    22741 gaagataatc ggggttttgt gtctccaaca gtgcggataa ctatgcttga tgcgggataa
    22801 ttttaataat gctcccactt cttgtaattt ttcgactact ttatcgttgg attcaaacac
    22861 acctaagccg gcaaagaacg gggtgtctgc tttgaattta ccgtcattgg aaattagccc
    22921 tgccatttca atgttatatt tgcgagcgac cacgaagtcg tccgcaccgt gatccggtgc
    22981 agtatgcact aaccctgtac caccgtctgt ggtaacgtgg tcgccaaaaa taaatggcac
    23041 gctgtaatca tagaatgggt ggttaaagcg taataattct aagttttcgc ctttggtggt
    23101 tgctaaaatc tcagcagatt caacgcctgc tgcttttgca acatcttcga ctaaatcgac
    23161 cgctagtaac acacgctcat cacctaattg gactaaggca tagtctaatt cagggttgat
    23221 cgcaatcgca cggttagacg gaatagtcca aggggtagtt gtccaaataa ccgcagataa
    23281 tgcccctcta cctttaccct gtgcgttgaa tttttcttct accgcattta cgtccacagc
    23341 attaaaacgc acataaatag agggagaaac tttatcttca tattccactt cagcttccgc
    23401 taacgaagat ccacaatcta agcaccaatg taccggtttt gaacctttgt ataaatgccc
    23461 gttcgcaatc actttgccga gcgtgcgaat aatattcgcc tcagtgttaa aattcattgt
    23521 taggtatggg ttatcccaat cacctaaaat acccatacgg ataaaatcgg ctttctgacc
    23581 ttctacttgt tctttcgcat agtcacggca cgcttggcga aactcggcag ccgaaatttt
    23641 ctcatttggt ttaccaacaa tcccttctac tttcagctca atcggcaaac cgtgacagtc
    23701 ccagcccggc acataagggg tatcgaaacc taatgcggtt ttcgatttca aaatcatatc
    23761 ttttaaaatt ttattcactg cgtgacctaa gtgaatatta ccgttagcat acggaggacc
    23821 atcatgcaaa ataaaggttt tcttgccttt cgaggcagta cgaatttttt ggtataaatt
    23881 tttgtcatac caatttttta acatatcggg ttcacgtttc gcgagatccc cacgcatagg
    23941 aaagcctgtt tcaggcaagt ttaaggtgtt tttgtagtca atagtcattt ttttatttct
    24001 cgttaaaatt atctgtttta tgcctagcac ggcatagccg tactaggtta agcatagctc
    24061 agcccctctg gggctggaaa ctagaaaggc tcaccttgca aattccttaa aaaattcaac
    24121 cgcttgcaag cgatctttct caatctgggc ttttagtgct tcaaagtcgg gaaattttat
    24181 ttcattgcgt aattttttta aaaagatcac ttcaatcgcc tcaccgtaaa tagaggcatt
    24241 gaaatcaaaa atatgcactt ctaataacgg cttagtaccg ttaatggtcg ggcggttgcc
    24301 gacattggcg attccgttaa aactgccctg tttggtcttc acttttaccg caaatacccc
    24361 ttgaatcggc gtaaccaaac gattgagcat aatatttgcg gtaggaaaac caatggttct
    24421 gccgagttta ttaccgtgtg caacgcgtcc cagaatcgaa taaggcttgc cgagtaattt
    24481 ctctgccaaa tctaactcat tgttttgtaa ggcttctcgc actaatgagc tgctaattct
    24541 ttcttcgttt aagctatggg tatggctttc ttccaccgca aagcgatatt ttaagccggc
    24601 attgcgtaaa gtttcaaaac tgcccgcccg ttttgcccca aagcgaaaat catcgcctac
    24661 acttaaatag cgtactttca gtcttttagc gagcaaatcg ctgatgaaat cgtctgccga
    24721 aatttgagca aatttttcac taaaacgcac gcatagcaca aaatccacac cggcttcttc
    24781 caaatatttt agcttatctc gcaggcgcat taagcgggcg ggcgggttac aagcggttga
    24841 atttccactt ttttttgcaa aaaactctcg aggttgtggc tcaaataaca tcacaactga
    24901 gggcaatcct aaatctaaag ctctatcaca aagacgagcc aaaatatttt gatgcccaag
    24961 atgcacacca tcgaaattcc cgatagagag aacacagcct tgatttaaag cgatgtgttt
    25021 gtctaagttg tggaaacctc gaataagttg cataaaagat aaaccatttt ataagtgaaa
    25081 attgctgtga ttataacgag aaatctacaa aaaaggaaaa aaattcaatc tgttatattt
    25141 ttttagtgct gaaagtggtc gtgtagctaa ttattaaagc aaagatatgc tataaaactg
    25201 ctatttatac aataaaaata tattcaaatg ctacatttta ctatatgata atcatcaaaa
    25261 aatcgaggga atcattatga cagattttgc ttatcttcaa caaaagcgca aacagcttaa
    25321 actcaaagtg aatgatattt gtgaacaagc tggggtaacc cgagcttatt ttaatcagtt
    25381 agtaagcgga aaaatcaaaa atccaagcgc caataagctt aaagccttgc attccgtttt
    25441 agatatcgta gaagatagca accagcgttc cggggttatt tttggcaaat tctatcctat
    25501 tcacacaggt catattaata tgatctatga agcatttagt aaagtagatg ttttacatgt
    25561 tattgtttgt accgattctg aacgggattt acgtcttttc caggaaagta aaatgaaacg
    25621 aatgccgaca aatgaagatc ggctacgctg ggtacagcaa atttttaaat accaacaaaa
    25681 acagatcttt attcaccatt tagttgaaga cggtattccg agctatccaa atggctggga
    25741 agattggtct ggtcgtgtta aagcgctatt tgaagaaaaa agcattaatc ctactattgt
    25801 ttttagtagt gaaattcaag ataaagaatc ttatgaaaaa tatttgaatc tagaagttca
    25861 acttgtcgat cctactcgtg aatcctttaa tatttcagca acacaaattc gtaataatcc
    25921 ttttcaatac tggcgcttta ttccgaaaga agttcgtcct ttctttgtta aaactattgc
    25981 gattttaggt ggtgaaagca gtggtaaatc agtgttggtg agcaaattag cgaatgtatt
    26041 taacactacc tctgcttggg aatatgggcg tgagtttgtg tttgagcaac ttggtggcaa
    26101 tgaacaagca atgcaatatt ccgactatcc gcaaatggtg cttggacatc aacgctacgt
    26161 tgattatgcc atgaaacatg ctcataaagt ggctattatt gataccgatt acatcacaac
    26221 tcaagcgttc tgtattcagt atgaagggaa ggctcacccg tttctggatt caatgatccg
    26281 cgaatatcct tttgatgtga cgattttact ttctaacaat acaaaatggg tagccgatgg
    26341 tttacgcagt ttaggatcga aaaaacagcg tcaacagttt caacacctac tgaaaaaact
    26401 actagaaaaa caccatattc cttatattaa aattgaatct ccaagttatt tggatcgcta
    26461 caatcaagcc aaagaggtgg tagaagctat tttaaatgaa gaaccaatcc cattacagtt
    26521 taagcaatat aatattcacg aatttgaata actgccacag gaaataacat gatacttttt
    26581 gcaggcgatc cacacggtag ctacgagcat ctttatccga ttctacaaca gcagacggag
    26641 gaggtagctt tagttattct aggcgatctt caattgacta ctcctgatga attagatcgg
    26701 ctttcgcagt attgtgatat ttggtttatt catggtaacc atgacagtaa aaccgttgct
    26761 gcctttgatg ctatttggaa tagtagctgg aaagaacgca atattcacgg taaagtagtt
    26821 gacattcaag gaataaaaat tgcaggtatt ggaggggtct tccgaggtca tatttggatg
    26881 ccgcccaatc gtccaatgtt ttttgatccc atccattttt gccaatactc tgctccggaa
    26941 aaaatttggc gtggtggtat tccattaagg caccgctctt cgatcttccc ttctgatttt
    27001 gaagcattgg aaaatgaaaa agccgatatt ttaattacac acgaagcacc aaagccacac
    27061 cctcaaggct tctctgtaat caaccagcta gcaagaaaat taggggcgag caaaattttc
    27121 catggccact accatgataa ttttaattat ggcaatctaa atgtcagcag agaatgtgct
    27181 atttataata tcggctttcg tagcctagcg gatattaatg gaaattatct aattttaggt
    27241 gttgatgatc gagagaaata gccaaaaatt tgactgaatt aaacaaattg tcattttacc
    27301 cttcccattc ataaatttat aagtaaaatg cgagaaattt gtaacataaa cgttattaaa
    27361 cagaatttat aaattaaatc agaggtttaa aagatgaaga tcccacaaat cttaattgtt
    27421 gaggatgagt tagtaacaag gaatatgctg aaaagcattt ttgaaggaga aggatatcag
    27481 gtatttcaag catctaacgg cgaggaaatg cactctgttc tgagtacaaa tgaaatcaat
    27541 cttgtgctaa tggacattaa cttaccggga aaaaatggat taattctcgc ccgagaaatt
    27601 cgagagaata tgaagctacc attaatgttt ttaaccggtc gcgacaatga aattgataag
    27661 atcctcggtt tagaaatagg tgccgatgac tatatcacta aaccgtttaa tcctcgagaa
    27721 ttgactatcc gagcgagaaa tttattgcaa cgaacgatga tagataaaga aaacgacgtt
    27781 gtaaaagagc aatctgaaat tgaaagctat cgctttaacg gttggatctt agacattaac
    27841 agtcatagtt taatctcacc agaaggtgag gtaaataaat taccacgtag tgaatttagg
    27901 gctttattac atttttgcca acatcctgga aaaattcaaa cacgtgaaga tttattgaaa
    27961 aaaatgaccg ggcgggaact aaaacctcat gatagaaccg ttgatgttac tattcgccgt
    28021 attcgtaaac attttgaaga ccaccccaat accccagaaa ttattgtcac cattcacggt
    28081 gaaggctacc gtttctgtgg taacatcgaa ccttaatcaa gataggagta attttatgaa
    28141 aaaattaact attgtcgcat taacttgctt attttctacc catctattag ccgctcctgt
    28201 cggaaataca tttactggca tcggtgtcgg tgtagatgta actacaacaa aatacaaagt
    28261 tgaaggagta aaaggcaagg attccacagg tccggcatta gttgtcgatt atggtattga
    28321 gcaaggcaat aactttgtag gcgttgtaca aggaaaagca aaagtaggta gtacaaaagt
    28381 atttagcgat gtaaaacaaa aaaataaata tactatagct tatcaacaag gttatcgtgt
    28441 tggatccgat ttattacctt atgtaaaagt agatgccagc tcaagcaaaa tcggtaatga
    28501 aacctatcgt ggctttggtt tcggtgctgg tgcaaaatat gcagtttcaa gcgatgttga
    28561 attaggtgca gaatacactc gcgataattt aaaacgtagc ggcacaaaat taaaaggtaa
    28621 cgctttcacc gcgaatgcaa cttatcgttt ctaatcttag cggtaaagtt ttctgaaaaa
    28681 ataaccgctt gtaacacaaa agagcctgaa gtgattcagg ctctttgcct tttaatataa
    28741 tactcgggct cgaatcgtgc cttcgatcgc ttttaaacgt tgtaatgctt catcaacatt
    28801 gtcgctctct acatcaatta caacataacc gatagctgca tcggtttgta aatattgagc
    28861 ggcaatattc acatttgatt ccacaaaaat ctggttaatt tgatttaaca tacctgggcg
    28921 attctcgtga atatgtaata aacgtttggt attagtatga agcggtaagg atacttcagg
    28981 gaaattcact gccgtcacgg ttgaaccgtt atctgaatat ttcacaaatt tattggcaac
    29041 ttcggtgccg atatttgcct gagcttcaga ggttgaacca ccaatatgtg gcgttaaaat
    29101 cacgttatca aacttgcaca atggtgacac gaacgggtca ttaattgatg ccggttcttc
    29161 cggaaatacg tcaatcgccg caccacgcaa tgagccgtct tcaatccgag cggctaatgc
    29221 gtctaaatcg accactgtac cacgagcggc attaattaac accgagcctt cttttaattg
    29281 agcaatgcgt tctgcactca ttaggttttt agtcgagtcg atttccggaa cgtgtagtga
    29341 aatcatatcg caggttgaaa gcaaatgctc taatgtcggc acttgctgtg cattaccgag
    29401 tggtagtttg ttttcaacat catagaaata aacctgcata ccaatggctt cggcaagaat
    29461 actaagctgt gaaccgatat gaccatatcc cacaatacct aatttcttgc cacgtacttc
    29521 gtttgcacct gctgccgatt tattccacac cccacgatgc acttccgcat ttgcagtcgg
    29581 gactttacgc attaataaaa tcatctctgc cagcactaat tctgccaccg agcgggtatt
    29641 tgagaacggt gcattgaata ccggaatacc tcgtcttttc gccgcattca aatcaacttg
    29701 gtttgtaccg atacagaaac aaccaatcgc aattaatttc ggagcttgag ccagtacttc
    29761 ttcggttaaa aaagtacgcg agcgaatacc aacaaagtgt gcatctttaa ttgcatcaat
    29821 taattcttga ccgtctaatg cttttttatg cacttcaata ttggtataac cagccgctaa
    29881 gagtacatca attgcgtttt gatgtacgcc ctcaagcaga aggaatttga tcttggattt
    29941 atccaaagaa attttagcca ttttttgctc ctaagtattt gtatttgcaa taataaatta
    30001 ttctaaaata actgcacctt caggtgtgcc gacaatggtt acattggcaa aacgttgtgc
    30061 aaaaataccg ttagtcacca cgcctgcaat attattaatg gtatgttcca ttttcaacgg
    30121 ctccataatt ttaaagttat gtacatctaa aatcacattg ccgttatcag tgaccacgcc
    30181 ctcacggtat tccggcgaac cacctaaggc tacgagctga cgagccacat aagaacgagc
    30241 cattgggatc acctccaccg gcagagggaa agttgaaccc agcacatcaa cttgtttgga
    30301 tttatccaca atgcagataa attttttcgc taatgaactc acgattttct cacgggtaag
    30361 tgctgccccg ccacctttaa tcatcgcccc ttgtggcgtg atttcatcag ctccgtcaat
    30421 atacacatct aattccgtca cttcattggc actgaatact tcaatgccga tatcacgcaa
    30481 acgctgttcc gaggctttag aggcagcaac cgctccttta atctcatctt tcattgaagc
    30541 aagggcatca ataaaacagt ttacggttga accacttccc accccaacaa tagtgtccgg
    30601 ttttacaaat tttaatgcag cttgtgccgc aatttttttc atttcttgtt gatccatttt
    30661 tacctccact tgtagggcaa atcatcattt gcccacttcg gcaaggcgaa aaaaattttc
    30721 gccctactac atctattcta cacatatatg taacaagcgg tcatatttgg caaatttttt
    30781 accaaaaacg accgcttgtc attagttacg ttttactgct tcaacaatct cttccgcaca
    30841 gctttgagca agtacagcat cttcgcactc caccatcact cgaattaatg gctcagtgcc
    30901 tgatttacgc aataaaatac gccctttgcc tgccaagcgt ttttccacat ctgccgctac
    30961 cgctttcact tcgttacttt caagcggatt tgccgcccct ttctcaaagc gaacatttag
    31021 cagaacttgc gggaacagag gcactgcttt tgccaaatca ttcaggctta atttgtggct
    31081 tgccattgct gctaatactt gcagtgaggc aataatacca tcaccggtgg tgtttttatc
    31141 taacacgata atatgcccgg agttttcgcc acccagtttc cagccttttt ctttaagctg
    31201 ctctagtaca tagcggtcac ccacgttagc acgagagaat ggaatggcta gctcttttaa
    31261 agctaattcc aagctcatat tactcattaa tgtaccgact acaccgcctt gtaatttgcc
    31321 tgaacgtaga gcttctcggg ctaaaataaa tagaatttgg tcgccatcaa ctttattgcc
    31381 taagtgatcg accataatca aacggtcgcc atcaccatcg taagctagac caacatccgc
    31441 acctgcttct accaccactt tttgaagtgc tttaatatcc gttgcaccac atttttcgtt
    31501 gatgtttaaa ccgtccggct tagtaccgat ttcaagcact tctgccccta gctcacgcat
    31561 tacattcggc gcgatatggt aggttgcacc gttggcacaa tccaccacaa ttttatagcc
    31621 ttcaaggctt agttcagacg ggaaagtgcc tttacaaaac tcgatataac gtcctgcggc
    31681 atcattaata cgactggcac gacctaaatt tgctgaatct acgcaatcca taggcttatc
    31741 aagcattgct tcaatcgctt cttcaatttc atcaggtagt ttttcaccaa ccgacgagaa
    31801 gaatttaatg ccgttatcgt aataaggatt gtgagaggca gaaatcacaa tgccggcttc
    31861 cgcacggaaa gtacgggtta aataagcaat tgccggagtc ggcatcggac caacgaatac
    31921 tgctgataaa ccggctgcgg ttaaaccggc ttccagagcc gattccaaca tataaccgga
    31981 aatacgggta tctttaccga ttaatacttt tttcgtgcct tgggttgcca acactttacc
    32041 tgctgcccaa ccgagtttta atgcaaattc aggtgtaatt ggaaatttac ctacttcacc
    32101 acgcacaccg tctgtgccga aatatttacg agccattcta attcctaaga ttgataaaaa
    32161 tttactttaa aaaatattga tatgccggac tttcgctcac attttggaag cggtaaccta
    32221 gctgttctaa atgtcggttt aattctactt catcgcctct gtttaatgca aatgcggcaa
    32281 gaatatcgcc ataatcggct ccgtgagctc ggtaatggaa taacgagata tcccagttag
    32341 tcagcatttg taagaatttt agcaatgccc ctttctgctc tggaaattca aagctataga
    32401 gttgctcata ttgaatggag cttgctctac cgcctaccat ataacgaata tgggttttgg
    32461 caatatcatc gtccgataaa tctgccacat catagccgtt ttgttgcaga tctttaataa
    32521 tctctacttt ttctgccgag cctgaaattc gcacccccac aaaaatacag gcttgtttat
    32581 catcggaatg gcgatagtta aattccgtta ccgcacggtt gcctaaaatc tcgcagaatt
    32641 ttaagaaact acctttctgt tcagcaatgg tgactgccaa taaagcttca cgtttctccc
    32701 cgatttcaca acgctctgac acaaaacgta aggtgtggaa attcacattc gccccggaaa
    32761 gaatgcaagc taagttttta tcttgtaatt gatgctcttt cacatatttt ttcaaaccgg
    32821 caagggaagt tgccccggac ggctcggaaa tcgcacgcac attttcaaaa atcaacttca
    32881 ttgaggcaca gatttcatca ttatccacca acaccacatc atcaacatat tgctgacaca
    32941 ggcggaaagt ttcatcgcca atgcgtttta ccgcaatacc gtcagcaaaa agcccaaccc
    33001 gttctaaatc ggtcggttgc ccttgcttta aggcgtgata taagcaagca gaatctttag
    33061 attcgacccc aatcacttta atattcggca tcacctgctt aattaaaacc gcaatgccgg
    33121 caattaagcc gccaccgccc actggaataa atacataatc taaatccggc ttttgttgca
    33181 ccagttctaa gccgattgtg ccttgccctg caatcactgc cgggctgtca aacgggtgaa
    33241 tgaaggtcat acccaattcg gtggaaagct caatcgcttt cgccttagct tcatcaaaat
    33301 tcgccccata aagcaacact tcaccaccat agccacgtac cgcatcaacc ttaattgccg
    33361 gtgtgttttg cggcattaca atcaaggctc ttaaacctaa atgtttggca gaaagtgcca
    33421 ccccttgtgc gtggttgcct gctgaagccg caatgactcc agcctctttt tgtgctttgg
    33481 ataaatttga gatcatcgca aaagcacctc gcaatttaaa gctgtgaacc ggctgtcggt
    33541 cttcacgttt gataaaaata gagttgccta accgctcaga cagtttttcc attttctgta
    33601 aaggggtcac ttgcgctaag tcataaatat ttgagcttaa aatcgagcgt aaatagtcga
    33661 tagcggattg ggaatgttgt gtttcgttca tcattttgaa aggttattta ttgttagatt
    33721 gagataaaga cattggtaaa tttccaagga aaattgaccg cttgtttggt tatttagcaa
    33781 tggctttaac agggaatatt tcctctcgcc cgtttgcggg agagagacag cttaaaattt
    33841 cgttcagaaa ttttaagcag agagagggga aaccttggat atccccctct ccctccgcaa
    33901 atcttcgatt tgctccaccc tctcccgcaa gcggggagag gggaaatcac aaagttagtg
    33961 atgaccaccg caaccacagc caccgtgtcc gtgatgatgg tgatgatcgt ggtcgtgacc
    34021 gccgcagcaa ccatcgtgat cgtgatgatg atcgtgccca ccacaaccgc aaccgtgttc
    34081 gtgtccgccg tgaacgtgtc cgtgtgcgat ttcttccgct gtcgcttcac gaatgccaac
    34141 cacttccaca gagaaaagta attcctgacc ggctaacata tggttaccgt ccaccacaac
    34201 ttcatcgcca tctacttcgg taattaccac cggtagcgga cctaaatccg tgtccgcaat
    34261 aaaacgcata cccacttcta attcatcgac gcccataaat acatctttcg gtacacgttg
    34321 aaccatatta tcgttgtact cgccgtaacc ttcttccggt ttcacacgca cttcaaacac
    34381 atcgcctaca gctttgcctt caagggcttt ttctaagcct tctaccaagt tgttgtgacc
    34441 gtgtaaatat tctaacggtt ggtttaccgg tgcttcatct actaatacgc cttcttgagt
    34501 acgcacttga tatgcaatgc ttggcactaa atcttttgta atgttcatat tgaatccttt
    34561 aattcatcgg ttttataaaa tagcaagcca ttgtaacgct ttattttata tttgcaatct
    34621 atctggaaat tttaaccgct tgtcagtaaa ttagtcgata atatcagggg ttacggtgtc
    34681 taccacatca actgcggttc ccaccactcc accaaccacc gaagttacca aacaaccact
    34741 taggaaaata gttgctgaaa tcagcccaca tactttgatt aattttttca ttttaaaatc
    34801 ctttcaaaaa caaaaaacag ccctaatcaa gactagagct gcatcatatt tattcgctta
    34861 aattattttt cttcagcgat aaagcgataa actaccgcac cgataattgc accgacaatc
    34921 ggagcaaccc agaacaacca taattgctca atcgcccagc tgccttggaa taacgctaca
    34981 ccggttgaac gtgccgggtt tactgaggta ttggttaccg gaatgctgat taagtggatt
    35041 aaggttaaag ccaaaccaat agcaatcgga gcgaaacctg ctggagcacg tttatcggtt
    35101 gcacccataa tgatgattaa gaagaatgcc gttaatacca cttcaattaa taatgctgct
    35161 gttaagctat agccgtgtgg cgaatgctca ccataaccgt tgccggcaaa gcctgctgta
    35221 gcatcaaaag tcggaacacc tgaagcaatg gtgtataaca ctgcaccggc agcaatcgca
    35281 ccgattactt gggcaatgat ataaggcact aaatctttag cgttaaaacg accgccgact
    35341 aataaaccga ttgaaaccgc cgggttgaag tgaccacctg aaatatgacc gactgcatac
    35401 gccattgtta atacggttaa accgaaggct aacgaaacgc ctgcataacc gattcctaat
    35461 tcaggaatgc ctgctgctaa aactgcactg ccgcaaccac caaacactaa ccaaaatgtc
    35521 ccgaaaaact cagcaaaata ttttttcatt ttttatcctt accctaaagg gtgaatcaca
    35581 cataagtgta ttaactttcc gaatgctata aaacatagcc aataaaatat gagtatacta
    35641 aaaaaagtaa agacgcatat ttcttaattg atagtataga ccgatttttt cctccaatta
    35701 aagtaaaaat acaactctat acaaatctat acatttctat tcaaattcca cacttcctga
    35761 agcggtagct gaaattgtgg ttttacctgc ttctaacggg atttcatcca tagatttgct
    35821 ttgtgccatt gatgaaactg catacattgc tctgtgttca taatatggtc taccaccatc
    35881 atttggagtt tgaatattga tattaactag cttatatgtt ttcgccccta aggctttttg
    35941 aatcacatcg gctttatgct gaaatttgct gataatttcc agcgtcattt catcttcaag
    36001 ggacgccatt ttctctggcg atacactaaa atcaatgtaa cgaatcgcca catctttacc
    36061 taaattttcc aacaccgctg ccattgcatc aaaatctttg cttttcaact gaatgctacc
    36121 agaggtatcc caaccatcaa tattcccttt gttgttataa ttaacgtgat tagtcacacc
    36181 ttcagcttgt acttcaatcg atggatgttt ttttgcctca gccaatacac gattcaggtt
    36241 ttcagataca aattttttca gctccggcaa ggagttacct gatttttggc tatacacact
    36301 tgcctgcatc acgtcctttt ccaccgtgcg agagacttcg gttgagaaat taaaagaagc
    36361 cggtttatct ttatgttcca cggtatgagt ttccgctgaa gttaccgctg ttgcgactgc
    36421 aagcggtaga atggtaagaa aatttttcaa tttcataatc agtccttaaa agggttaaaa
    36481 atcatttctt agatctcact tgcgtaggaa agttcattca atcgaaagca caatcgcctg
    36541 tgtatcattt tcaatttgcc agcgaatatt gtagccggca aggttcatac cataaactcg
    36601 ctcactaggt ttcccttgtt gatacgccgg gcgagggtct tgggcgatga catcggcaag
    36661 aaaactaagc ggctgttcga tgccaaattt tgcaaaattt cggcaaaatt cgacagcttg
    36721 ttttgcctcc tcgctaaaac gcaccgctaa tcttgcttgt ggtttttgct gagcaaaacc
    36781 ggaaaccgct tgcggctcgc tatctgcaaa tgcaatgtaa ggcttgatgt caaaaattgg
    36841 tgtgccgtta actaaatcca cgctgcctaa tttcaaataa acttcactcc cccccgccac
    36901 taccgcttct aacttcactt tcgataagcc aagcggattc ggacgatggg tggcacggct
    36961 ggcaaagacc ccgacccgtt cgttcccgcc caagcgaggc ggtctgacgg tggcgtgcca
    37021 ctctctttcg ggaatgtgat ggaattggaa aatcaaccaa atatgactaa atttctccaa
    37081 gcctctgact gcatcggggg tattgtaagg cggaattaaa cgtagaatgc ctttcccctc
    37141 cgctaccaaa ttcggctggc gaggcacgga aaatttttca tcataggggc tttccacaaa
    37201 accgataggg tttaattgaa tcggggttag ttgatttgag gtagagttca ttacgctttt
    37261 ttctgttaaa ataatataaa atattggaca taatgatatg aaattgagga tggtgcaagc
    37321 gtccacgctt gtaccaattc gttttaccat ttaacacaag agtggacgct tgcactatcg
    37381 cttaaatcct taacatcatt gtaaatgaaa ttacgctaag attattctct atgaacaaaa
    37441 attctctctt ttcgatttgg tttaccaccg ctcgcccgaa aactttaccg ctggcgttag
    37501 cttcaattat tgtgggttca gcacttgctc attgggcagg gaaatttgat gttgttacca
    37561 ccttactcgc atttatcacc accattttgt tgcagatcct gtctaacttc gccaatgatt
    37621 acggcgacca cgtcaaaggc tctgacacca aagaacgaat cggaccgcta cgggcgattc
    37681 aacacggtgt tattggcggt gaacaactta agaaagccgt gattatctta agcctactct
    37741 cgtttgtttc cggtgttgcc ttaagtgcct atgcttttga aacagtgcag gatctgtttt
    37801 tctttatcgg gcttggcatc gtctcaatta ttgccgccat tacttacacc gtcggcaaaa
    37861 aagcctacgg ctatttgggg ctgggcgatc tatttgtgct gattttcttt ggctttgtag
    37921 cggtaatcgg cgtgttctac ttgcaggctc atagcctacc tataatgatt ctgctccctg
    37981 ctttcggttg cggattgctg tctgtagcag tgttaaatat caataacttg cgtgatatta
    38041 accaagaccg acaagctggg aaaaacactc tcattgtacg aatcggtagc caaaacgggc
    38101 gaaaatacca cgttgcattg ttagtgctag cggtcatttc ttatctgatt tttgcaattt
    38161 ctgaatttga acattggtat agcttcattt ttttgctgtc tgtaccgtta ctggcaaaac
    38221 acgctcgttt tgtctatcag cataaagacc caaaagaact ctacccaatt ctagggcaaa
    38281 tggcagggct ggcgttgctc actaatctat tatttagttt gggcattgtg ttagggtaag
    38341 ttgcaaaatt ttaacaaaac taaaccgctt gtaataaagg attacaagcg gttgtttttt
    38401 atctaaattt acaattagtt atctagttct tcaaagaatc catctttttc gccacgttga
    38461 tactccgaat tgagcaactt attaataatg taccaatccg cttcaacctc tatatcgcct
    38521 tctgcataag cacctaattc gtatggcgga taaacaaaag caatgccgtg aggggtaaag
    38581 tagaattggt cagaaatacg gaactctttt ttatcagcaa atccattata gttgccattt
    38641 tcatccacac gcacgctact gtaattttcc caaagaatgt ctttcagttg aacttgattt
    38701 tttgggctga ttaaatcatt taagccaatg attgcttttt tagctaaatc tacattgata
    38761 tattgcgtat agtgcatacc gtgagcccca cccatatagg tgtaatgcat catagtgaat
    38821 gtagcaatat tattgcgttg cccgataaaa gcactggaaa tatgatcatc atagccaata
    38881 gctggctcgg ttttcacact ttctaccaac ccttgataaa ccgcttcacg atgcttttta
    38941 aactcttctt cggttggatt tttcagcttt ctgccttgtt cttcattgta atcataggcc
    39001 tgattaatca aaagctggtt aagccaatca aaattggttt ttggtagaga cacaaacgca
    39061 cttactgtac tttcttctat tgcaaattct tgtttcggat caacttggtg cttaatcacc
    39121 tctttcttat caaagatttt cacaatttca acatttaacg ctgtgttttg ctgagcgttc
    39181 tctaactctg attttaattt ttcattttct gctttcaccc ctgaaagttc tgcaacttca
    39241 gcctcttttt ttgctaaatc agcctgagca ttttttaatt ctgtgcctaa ctgaacaatt
    39301 tgtttttcgg cttctaatac cgtttgggtc attttgccgt cttcacaagc tgaaatcaga
    39361 aatactgagc caattaaaag tgctaatagt gattttttca tctctccctc ttttgtaaaa
    39421 aatacggtaa atatcaccgc ttgttataca gattaaaaca aaatccccta taccatcagg
    39481 cataggggaa atgattagtc gtctaagaaa ctgcgtaagg tttccgaacg gctcgggtgg
    39541 cgaagtttgc gcagtgcttt cgcctcaatt tggcggatac gttcacgagt tacgtcaaat
    39601 tgtttaccaa cttcttcgag tgtgtggtct gtgttcatat caataccaaa acgcatacgc
    39661 aacactttcg cttcacgcgg ggttaagccc tctaacactt cgttcgttgc catacgcagg
    39721 ctctccgcag tggcggaatc caatggtaat tcaaggcttt cgtcttgaat gaaatcacct
    39781 aaatgtgaat cgtcatcgtc accgattggt gtttccattg aaatcggctc tttggcaatt
    39841 ttcaatactt tgcggatttt atcttccggc attcccatac gttctgccag ttcttccggc
    39901 gttgcctcac gccccatttc ttgtaaacat tggcgtgaaa tacggttgag tttgttgata
    39961 gtttcaatca tatgcaccgg aatacgaatt gtacgggctt ggtcagcaat cgaacgggta
    40021 atcgcttgac gaatccacca agttgcataa gtcgagaatt tataaccacg gcggtattca
    40081 aatttatcca ccgctttcat taaaccgatg tttccttctt ggattaaatc taagaactgc
    40141 aagccacggt tagtgtattt tttcgcaatc gaaatcacca aacgtaagtt agcttccacc
    40201 atctcttttt tcgcacggcg ggcttttaac tcaccattgg aaatacgccc gccaatttca
    40261 cgaatttgag caatggttaa gcctgatgtt tgctctaaat tctgtaagtt agcaatattg
    40321 acacggatat tatccacata attagctaat ttcggtgctg catttttctt ggcattaatc
    40381 gctttttcaa tccacgcttc gcttaattcg tgcccttgga atgctttcaa gaaatccgct
    40441 tttttcatgc cggcatattc cactgcatag cgttgaattt gacgttcttc agtgcgaacc
    40501 tgcttcatca gtttttgcat agaagcaacc aataagtcaa attgcttcgg caccaaacgg
    40561 aattcacgga aaatatgaga taaaatttca atttgctctt tcgatttttt actggttcgc
    40621 ccgtgttttt gaatgaccaa taacactttt tcatgttggc tgcgtagggc ttcaaatttt
    40681 tcacgggcaa gttccgggtc aattgagctg tcatcactgc tgtctgaact gctatcaccg
    40741 ttttcatctt cgttttcgtc atctacatca ggcacatcag aagattcttc atcttcacct
    40801 aaagcagcct caatatcctc taacggtgct tcttctaaaa tattaggatc gacaaatgct
    40861 gtcactaaat cagaaaggcg catttcaccg gtttcgactt gagcatagca ggctaacagg
    40921 ccacttaagg cttccggata ttccgcaatc gcacattgaa cttcgttaat cccttcttca
    40981 atgcgtttag cgatatcaat ctcaccttca cgggttaaaa gctcaactgt ccccatctca
    41041 cgcatataca tacgcacagg gtcagtagtt ctacctaact ctgattctac ggttgaaagc
    41101 actttggtgg cttcttctac cacatcttca tcggcgatat tttcagcgag tagtaaatca
    41161 tccgcatcag gggcagcctc taaaacttgg atacccatat cgttgatcat ctgaataata
    41221 tcttcgatct gctccgcatc caccaactct tccggtaagt ggtcgtgcac ttcagaaagc
    41281 gttaaatatc cctgttcacg cccttgactg atcagaagtt ctaattgaga ttgctgttct
    41341 aattgttgat ctgcttggtt ttccatagtc tatccgttta ttatgcgagc aaaaatagta
    41401 gtggattata ccactaaatt tggttcgact tcataaattc acaaaaaaat tctatttttc
    41461 taatttacac attactttga tgcttatgag aacagagagg tgtagcaaga gagataaata
    41521 actttctttt tagatagaat taattatttt cttcgttcat cacttctgcc aaatctcccc
    41581 taacccctct ttgctaaaga ggggaattat tcgagcttaa aattctactg aaacatcaaa
    41641 agagcatact cttttttctc atcatcggtt aagcccacgg ttcggtcttt ggcaattagc
    41701 tcttctttgc gtaattccac taatttggcg tagagaaaat cgagagtgtc aataaatgtt
    41761 cgttcgatat tttcgggtaa ctctaaatga tcccaatttg cgagggcttc aacaatctta
    41821 tattggggat cttcccgata atgttcaagt agcccgccca tactgatacc tgcattttgc
    41881 tgacaagttg cgacaatatc ggttaataat gtaaagccag gatctttcaa ggaggctaaa
    41941 gcacttacat cgggtacgaa tttcacaaaa tacggatttt gaatcaataa cgcaatcaac
    42001 agccgcattg gcgtacgttt cattttgacc gcttgatgta aaggcttctc tgccgctttt
    42061 ttcgtcggta acagagcttc tatctgcgtt gggtctaaaa tgcctaattt ctgtcctaaa
    42121 atattgcgta aatacactcg cagcatctcg cccggaatac gattaattaa cggcacagct
    42181 aaagcagcga gcttggattt tccctctttt gaagagagat ccacatccgc cagcaaactg
    42241 tcaaataaga aatcgcttaa tggcttggca ttctgtgcca cgtactgctc aaatccttct
    42301 ttaccttgag aacgaacaaa ggtgtccggg tcttcgccat cgggcaagaa aataaatttc
    42361 agttggcgac cgtcttgcaa ataaggcaac gcattttcta acgcccgcca agctgcatct
    42421 cgaccggctc tatcgccatc ataacaacag acaatttgct cggtgcaacg aaacatttgc
    42481 tgaatttgtt caccggtagt tgccgtgcct aaagaggcga ctgcattgtc cacgccgaat
    42541 tgggcaaggg cgaccacgtc catatagcct tccaccacga acagataatc cggcgtttca
    42601 ttgactttca gtgcttgata caagccatat aactcactgc ctttatgata aatcaccgtt
    42661 tcgggcgagt tcatatattt cgccccttgc tcatcattcg gcaacacccg cccaccaaag
    42721 gcaattaccc gtccacgctt atctcgaatc ggtaacatta cccgattgcg aaatttatcg
    42781 taaattcgac cgctatcatt tttggttaaa acgcccgtat cgagcaattt ctgaatatct
    42841 tcttgtgatt gcccaaaagt gcgtagggct gcatcaaagg cattcggagc aaaaccaatt
    42901 tcaaagcgtt cgataatctc ttcagacaaa cctcgttgct gtaaatagct ttgtggctca
    42961 atctggtgcg ataaattctg ctggtagaac ttcgccaccg cttccatcaa ttcataaaga
    43021 ttacgcttag ttttaaaatt agcttgaggc ttgccgtcac gttgaatcac attctctctc
    43081 ggtacttcca gcccgtgcat agctgccagt tcttcaatcg cttccggaaa ttcgagtttg
    43141 tcataatcca tcaaaaaggt gatgacattg ccgtgtacgc cacagccgaa acaatggtaa
    43201 aactgttttg attggcttac cgaaaaggaa ggggttttct cgtgatgaaa aggacagcag
    43261 gcttgataat ctcgcccagc ctttttgagt ttgacccgac tgttgatgac ctcaacaata
    43321 tcggtgcgag cgataagatc atcaataaat gaacgtggaa ttgtgccttt cattgatttc
    43381 ctcctgctct ttgaatgata caagcggagc aattttgcaa attttttgca aaaaacaacc
    43441 gcttgaaata gaaacgttaa aaacaccaaa accgtgagcc taacggaatc acggtttcga
    43501 tatagtttgc taaccagcct aactaattag tataaacgtg tgttacgtgc gttctcacgg
    43561 aaattacgtt tagcgtgacg tttagcaagt gatgcttttt cacgtttacg aattgtagtt
    43621 ggtttttcgt agaattcacg agcacgaact tcagctaaga tacccgcttt ttcgcaagag
    43681 cgtttgaaac gacgtaatgc tacgtcaaat gattcatttt cacgaacttt aattactggc
    43741 atatgccatc acctcagaaa aatatgatta aattaaaccg cacacaattt tggcggcata
    43801 gaacaaaaaa ggtagtgcat tctaccttaa gcactcacat aagtaaagta gtattgtggc
    43861 ataaaaccgc cgtattatgt tgcatttttc tacagttcga ataatttctc ggtcgaaaaa
    43921 cttaatgccg gaaagaccac cgaagttgcc ggttcatctt ctgccaccgg ctgaataccg
    43981 atatatttac cgttttccaa cacaaaaatc tgaatagtgc gggtttcggg agaaacaatc
    44041 caatactctt tcaccccttg ttcctggtaa agctcgtatt tatctttcat ctcccttttg
    44101 gtattacccg gagaaaggat ttccaccact aaatccggtg cccctacaca gcctctttca
    44161 tctaacttac tgacatcaca aattacacaa agatcaggct gcactacagt tttgactttt
    44221 ccgttttcat cgggaaaccg aacgtcaaaa ggcgcagaat aaatctggca ttggtgattg
    44281 tcaaaaacct ctaaaaattt tgctgtcatc ttcatagaaa ttcgctgatg aaaacgagta
    44341 ggagccggag acatcgccac aattttccct ttgataatct caacccgctc tttaaatttc
    44401 catagcaaat aatcagcgta actgtaactt ttttgtaagt ccagttgatt taagctggta
    44461 atttcgttca ttggtaataa gctcataccg cctcctttat cagaaatata aagatattat
    44521 gccgaataat ccctcaaatt caacaaaact ttcgctaaaa agagatagat aacctttata
    44581 cccttagtat aaaatgacag caattttcat tgttttagga tatgtcgatg caccttaact
    44641 tcaaaaaaat agacaactca catattgctc ttttctataa tgtactagtc gccacatttt
    44701 ttgtcactgt tttaaccttt aagaaaggtt atagttatgt gccaatggca ttaggtatta
    44761 tcgctacact tagtttctta ttttatcgtt tcaaattaaa acaaaagtgg ttacttgata
    44821 aagaggataa attttttatt ttctcgctta ttggctattt tctaacgttt gcaatgtctg
    44881 ctatttttaa tggcgatggc attcgtgaaa ttgataatcc tatccagatt ttattgctta
    44941 tccctttaat catcctcttt agactttacc cgattaaaaa agaaactgta ttgcacttta
    45001 taccgattgg agcgttggta gctggttgta tagcaatata tcagaggttt atattaaatc
    45061 ttaaatttcc tttccctgaa ataatgcgta ttcaatcggg gaacatagca atattattat
    45121 cactatttag tatagcaatt gccttttatt ggctttcaaa aaaaagaatt aaaactggca
    45181 ttgcctacct ggtttttgcc atgtttgggt tatttgccag tattctaaca ggagcaagag
    45241 gcggctggct tgcattcatt cccatttgct tttttatcct atttttaaat ttaagacagc
    45301 taaataagaa agctattttc ctgattctat tagcacttat atcttcactc tcatttttta
    45361 tctccaaacc agaatttggc atacaaaaac gatataatgc agctaagaat gatattatcg
    45421 tatttttaga aaaaggaaat agacattcat ctctgggagc tcgttttgat atgtgggaaa
    45481 atgcgcttat cggaatccgt gaaaaaccgc tattaggaca cggtagcaca ggctatgaaa
    45541 cattcaaaaa gaaacagatt gaaacaaaac aaatggcaaa aacaacgctt aggtttaata
    45601 gcttacacaa ccaataccta gaagcctttg tgaaaagagg tgtagttggt tttatggcgc
    45661 taatggctat tttaattatt ccatttgtta tttttgccaa acgattaaag gcaaaaaata
    45721 gagaggtaaa atgtatggcg atattaggca ttgtacatat tatttcgcat tcattctttt
    45781 tcctaagcca atcattttta gcccataatt caggctcatt attctatttc tttgtgttaa
    45841 ttttactcta ccatttagtc aaacagaacg aagagataat atgataaaac aatagaagaa
    45901 agttgggaat ataaccgagg tggtaacttc atcttctacc acaggataaa tgtcgggata
    45961 tttcctcttt ttctgcttct tactactaat tccgattagc caaataccat tccactgttt
    46021 tacgcaagcc actttcaaaa gtttctttcg gtttccagtc gagttccttt tcgatttttg
    46081 aagtatcaat tgcatagcgg aaatcgtggc cagggcgatc ttgcacataa gtaattaaat
    46141 cagcatattg tcctacaaca agcgggttat ttggcaccat ttcttgcaaa atagaacaga
    46201 tagaacgaac cacttcgata ttggtttttt cattatgccc gccaatattg taggtttctc
    46261 cgatttgccc tttttgcaac accaaataga gggcacgaat atgatcttcc acaaacagcc
    46321 aatctctgac ctgcaagccg ttgccgtaaa caggtaggga tttaccttct aaggcattta
    46381 aaatcattaa cggaataagt ttttcgggat attggtatgc cccataatta ttggaacagt
    46441 tggtgatgac agtcggtaaa ccgtaggtgc gatgccaagc ccgagccaga tgatcgctgg
    46501 cagctttaga tgccgaatag gggctacttg gattataagg ggttttctcg gtaaataatt
    46561 cctcgctttt ggctaaatca ccatagacct cgtcggtcga gatatgtaga aagcgaaacg
    46621 ccgatttcct tggctcaggt aacgtgtccc aataggctct cgctgcctct aataaagtat
    46681 aagtgccgac aatattggtt tgaataaaat ctgctgcccc agaaatagag cgatcaacat
    46741 ggctttccgc tgctaagtgc attaccacat caggctgata tttgccaaaa atctcagaaa
    46801 tttgaccgct tgcacaaata tctgcttttt caaaatggta gcgttcgtga tgtgcgacac
    46861 tctccaatga ggctaaattt cccgcatagg tgagcttatc cacattgata actgtgtgtg
    46921 gagtatgttc aatcagatag cgaactaatg cagatccgat aaaaccggct ccgccagtga
    46981 tgaggatgat cataaaggtg aatatgaaat ttgattcacg aaatttcgtt tgtatttaat
    47041 atggctttga atattctttt cagcgtcttt tttatcccaa atttgcaatt cccaaggata
    47101 ataaaagtta cttgaattct taaaataaat atgaataccc acatattcat ctttatctct
    47161 caaataccaa ttttttagtc catatttttc ttgccaataa tctaatgact ccattacttg
    47221 ctgaatcact tcactagaaa caataatacg agctccaaaa atatcgttga gaatgctatt
    47281 tactggataa ccttcactac gctgtttaaa acgctcgatt ttatctaaaa tcgattctga
    47341 ggtttttact cggtaaaaat aagaaattcc ctctaaatct gcacgatata aataatcatt
    47401 aatagattcg tgtaaattaa gacgataagc taaaatatgt ggcgtaggca ctttggcaaa
    47461 agtatgctta agattcactt tttcaatctt acctgtttca aagtagtctt tcgaaaaagc
    47521 taagtgcaac ttgttgattt catcaatgag tttttctatt ttctcaagca tgctattcac
    47581 tctctaattt attatcttgc cccaaatcca gttagcattg ttttcaatgt tttaaaaata
    47641 attaaaatat caagccataa agaaaaatgc ttaatatagt agaagtcatg ttctactttt
    47701 acttttgtat catcaacatc tgccgcataa ccttggacga cctgagccca accggaaata
    47761 cccggtttaa cgatatggcg ataattatag aatggaattt cctcttcaaa tttatctaca
    47821 aaggctgtct gttctgggcg aggaccaatt aagctcatat caccttttaa tacattaaaa
    47881 aactgaggta gctcatcaat acgagtttta cggataaatt tcccaatacg agttaccctc
    47941 atatccgcac tcgaagcaaa ctgtgcatca tctttttcgg agtctttaca catactacga
    48001 aatttataaa tattaaactc ctttccacct tgcccaacgc gtttttgaat aaacattgct
    48061 ccaccttcac tttctaagcg aatagcaata gcggtgattg tcataatagg taaagtaatg
    48121 ggaaacgtag caacaatcaa tgcaatatca atgatacgct tcactaatga gtaaattgga
    48181 gaaggaagta atgaacctaa gtcattttca tacatatggc gaattttgac acgcccggtt
    48241 aaagattcct caagctggcg aacgttatat acaggaatac cattcaatgt acatttcgct
    48301 aaaaatttat gccattctgc ggacaaatca ggatagtgta aatctaccgc aatagagtta
    48361 attctctttt cccccaatat tggttcactt aattgaatcc actctacatt ctgaattcgg
    48421 ttcaaattga tagctcttcc gaatggaacc aaagcgattt tagggataat ccaacttctt
    48481 gaaagaaaat aaccaataaa acaaaataga attgtgagta taaagctcgt acctagcaat
    48541 gtattagaat aatcaaatct aaatattgtt aacacgatta ataaaaccgc ataccaagaa
    48601 ataacggtgg aaaaaacaaa acttgctgac ttattacctg gatatttcat taacactctt
    48661 aagctgatag ctatcattac aaaggcaaga gaagtcgcta taatcgtatt agaacgagtt
    48721 tcaatagaat taaatttctc tccccaaaaa tagatagcgg gtaagacact tgagaacata
    48781 acgcccaaaa tactttgaac agctgtacta aaaaagatac gttcatacca acgagagtgt
    48841 cttttctttt gctgaatgct cataatttat ccttttctta atttcttata aagtcttcct
    48901 aaaagagatc taggcaataa ccgtggtaag gctctaagta taaaaaacat gcttgatgag
    48961 attattgatt gtaatcccaa ctcttttttc aattttgcta attggtactc actcttaatg
    49021 taattccacc ctttacgccg agcgtacatt gcagaacctg aacgaacatt taccagtaca
    49081 tctggtaaat tatacacctc atatttctgt gtaataactc gtaaccataa attgtaatct
    49141 tccatataaa gatgatgctg atagcctcca acatgctcga tcacagattt tttataggct
    49201 actgccatat ggttaaaagg atttcttagt aatgctgaaa tacgaatttc atcatcatta
    49261 atgggcactt gttttatacc cagagaatta gacattgttt cgtcaaattc ttcaacttgt
    49321 ccccccaata aaaccacatc aggattttta ctaataaaat caatttgctt ttcaaatcga
    49381 gatggtaagc aaatatcatc agtatccatt ctaaacaccc actcattaga gcagtgtttt
    49441 aagccttcat ttaaggccgg cctaaaccca cattttgtgg taaactaaca acaacaagcg
    49501 gtaatttttc agtaaaatgt tgcacaattc gctctaaatc tccaggaatt ataccatcaa
    49561 aaaccacaac aatttcactt gctggtaaag tttgggatac taaagaatct aaacacatct
    49621 ctaaataagc tggtttttct ttataataca aagatattaa tatcgaaaac ttcacaacta
    49681 cttt
//
LOCUS       DANMBQ010000006        49089 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.006, whole genome shotgun sequence.
ACCESSION   DANMBQ010000006 DANMBQ010000000
VERSION     DANMBQ010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 49089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 49089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..49089
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.006"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            124..1350
                     /locus_tag="PXE92_000290"
     CDS             124..1350
                     /locus_tag="PXE92_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HDL5759582.1"
                     /translation="MAMPSQRFSLTWVLNLFGTAVGAGVLFLPINAGMGGFYPLIIMT
                     LLVGPMTYLAHRGLTRFVLSSKYKGSDITAVVREHFGEQAGKLITLLYFFAIFPILLI
                     YGVGITNTVSSFMENQLHIAPPSRAVLSFMLIAAMIGVMLLSEQVMLKITTCLVYPLV
                     LILLGLSIYLIPQWNTAALQQMPTTGDFLTTLWLTIPVLVFAFNHSPAISSFALSQQK
                     YYQDDKKAEIESAKVLRSTAFILVLFVMFFVFSCVLTLTPEELAQAKVQNISILSYLA
                     NKFDNPIISYFGPLVAFLAIGSSFFGHYLGAREGLEGLVNQMRKEPIDPSKFRKITAI
                     TFLIILWIVATINPSILGFIESLGGPIIAMILFIMPVYAVYKVPALARFKGEFGHLFV
                     LVMGCIAISAIVYGLL"
     gene            1407..2783
                     /locus_tag="PXE92_000291"
     CDS             1407..2783
                     /locus_tag="PXE92_000291"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000626422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HDL5759583.1"
                     /translation="MISVFDMFKVGIGPSSSHTAGPMKAAKEFVDELQNRKFLNKIDR
                     LRVDVYGSLSLTGRGHNTDIAIIMGLMGYLPHNVDIERIEQTIENLKQNKQLIIAESS
                     VEPKVIAFDFYEDMPFHRDFLPRHENGVKFSALSGEELLFQNTYYSIGGGFIVDEANF
                     EQVKNSDLSVPFPYQNAADLLAHCKNNGLPLSSLVWKNELALRSRVEISDYLAMIWNT
                     MEACIERGLNTEGLLPGPLKVVRRASGLRRMLEANSKFNTDPMQIIDWVNMFALAVNE
                     ENAAGGRVVTAPTNGACGIVPAVLAYYQKFIAQLNQDTIERYLLTTSVIGSLYKMNAS
                     ISGAEVGCQGEVGVACSMAAAGLTEIMGGSAEQVCMAAEIAMEHNLGLTCDPVGGQVQ
                     VPCIERNAIASVKAINASRMALRRTSSPQVSLDKVIETMYETGKDMNAKYRETSTGGL
                     AIKILPCD"
     gene            complement(2838..4427)
                     /gene="purH"
                     /locus_tag="PXE92_000292"
     CDS             complement(2838..4427)
                     /gene="purH"
                     /locus_tag="PXE92_000292"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDL5759584.1"
                     /translation="MAIQQALLSVSDKKGIVEFARGLSARGVKLLSTGGTAKLLAEAG
                     LLVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGTDDEVMNQHGIERIDMVVVNLY
                     PFAQTVANPNCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVNNNDFDAILAEMDQHQ
                     NSLTLETRFNLAIKAFEHTAQYDSMIANYFGQKVPPYQGAEEEDLTQPSGQFPRTLNL
                     NFVRKQTMRYGENSHQNAAFYVENELKEASVSTAKQLQGKALSYNNIADTDAALECVK
                     EFSEPACVIVKHANPCGVALGKNILDAYNRAYQTDPTSAFGGIIAFNRELDGETAQTI
                     ADRQFVEVIIAPTVSASAKEVLATKKNVRVLECGEFSEAVKRLDFKRVNGGLLVQDAD
                     QGSVSIDDLKVVSERKPTEAELKDLLFCWKVAKYVKSNAIVYAKDGQTIGIGAGQMSR
                     VYSAKIAGIKAEDEGLQVVGCVMASDAFFPFRDGIDAAAKVGITCVIHPGGSMRDQEV
                     IDAANEHGMAVVLTGMRHFRH"
     gene            4599..4868
                     /locus_tag="PXE92_000293"
     CDS             4599..4868
                     /locus_tag="PXE92_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL5759585.1"
                     /translation="MINHNLADFVFEYFTENNLKAGTLRYRYIKENVIDAYSTRVDDA
                     FQGKGIAGELYNALIAFAQEKGLKIKPSCSYIEVKMQRSHRDLIA"
     gene            complement(4955..6400)
                     /gene="dacB"
                     /locus_tag="PXE92_000294"
     CDS             complement(4955..6400)
                     /gene="dacB"
                     /locus_tag="PXE92_000294"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HDL5759586.1"
                     /translation="MIFKNFTRAFLNKFILSTLLIPSITQAEINTEELLNTLPAGTSV
                     SFIAKNLDTNQIITQYQSDIFMLPASTQKVFTALAAKLTLNDDFRFQTALLTNGKVEN
                     GVLKGNLIARFSGDPELTSGQIYQLMSKLKQQGINKIEGDLILDPSVFASHDKASGWI
                     WNDLTMCFNAPPAAINVDHNCFYVTLNADQPIGEFAKVNVPSAYPVQVFSSAYIVEPK
                     EAPFCQLDVVVHDNNRYQIKGCMARQSQPFGLSFSVQDPTNYGANMLKAQLKSLKIAF
                     NGQVKEPLTAQNGTLLAEHYSEPLPVLLKKMMKKSDNQIADALFRTVANKQHNRPASF
                     QLGSYVIRQLLKTKANIDFKNSVVADGSGLSRHNQVSSRTMLETLEYIAQNEESLKLF
                     ETFPIAGVDGTISGRGSISTEPLAKNLIAKTGSLKGVYNLAGFMKNARGERIAFVQFI
                     NGYSTGELESKTKRAPLNTFENKFYMALFNE"
     gene            6497..6973
                     /gene="greA"
                     /locus_tag="PXE92_000295"
     CDS             6497..6973
                     /gene="greA"
                     /locus_tag="PXE92_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDL5759587.1"
                     /translation="MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEE
                     VTYRIVGDDEANIKEGLISVNSPIARGLIGKEVDDSVSITTPGGKVEFDIVGVEYI"
     gene            complement(7029..7445)
                     /gene="ndk"
                     /locus_tag="PXE92_000296"
     CDS             complement(7029..7445)
                     /gene="ndk"
                     /locus_tag="PXE92_000296"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDL5759588.1"
                     /translation="MIQQTLSIIKPDATRRNLIGKILAQLEENGLTIKALKKVHLTRE
                     QAEGFYAEHKGKDFFEPLVEFMTSGSIVVSVLEGENAISHYRALMGATNPDNREKGTI
                     RDLYALSMRENSVHGSDSEESAKREIAYFFVPSEIV"
     gene            complement(7455..9533)
                     /gene="metG"
                     /locus_tag="PXE92_000297"
     CDS             complement(7455..9533)
                     /gene="metG"
                     /locus_tag="PXE92_000297"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDL5759589.1"
                     /translation="MANQKRKMLVTCALPYANGAIHLGHMLEHIQADIWVRFQRMRGN
                     EVHFVCADDAHGTPIMLNADKLGITPEQLIEKAKADHEADFASFNISFDNYHSTHSEE
                     NRQITTDIYKTLKANGFIKSKVISQLFDPEKNMFLPDRFVKGTCPKCKAEDQYGDNCE
                     VCASTYSPMDLINPRSAVSGATPVVKESEHFFFDLPSFEGMLKEWTRSGSLQPEIANK
                     MQEWFESGLQQWDISRDAPYFGFEIPDAENKFFYVWLDAPIGYIASFKNLCDRAGIDF
                     DEFWQKDSTTELYHFIGKDIVYFHSLFWPAMLEGSGYRKPTNVFAHGYVTVDGAKMSK
                     SRGTFIQANTYLKHLDPECLRYYYAAKLNDRIEDLDFNLDDFVQRVNSDIVNKLVNLA
                     SRNASFIAKRFEGKLAEKLDDEALFNEFTAQAETIANFYENREFNKAIRAIMELTDKA
                     NKYIDDKAPWVIAKEEGKEAELQAVCSMGIELFRVLMSYLKPVLPKLAERAEAFLQSE
                     LRWDNIATPLFGHTVAPFKSLFSRLEKKQIDAVIDETKALFAEANKKTENQTKGTQKV
                     EQQAVEKQENIAVEPISPEITIDDFAKLDLRAAKVLNCEAVPKSDKMLRFELDLGDHQ
                     RQVFSGIKAAYPNPEALIGRFVIVIANLAPRKMSFGMSEGMILSAGTGGANLFLLDAD
                     SGVQPGMQVK"
     gene            9745..10716
                     /gene="menC"
                     /locus_tag="PXE92_000298"
     CDS             9745..10716
                     /gene="menC"
                     /locus_tag="PXE92_000298"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HDL5759590.1"
                     /translation="MRQVKLYRYQLPIQTGVVLRKQPLKERQGVLVCLQEQEKVGWGE
                     IAPLPSFSQESLEQAENQAVNWLKAWQKGEPETLEQLFPSVAFGLSCALAELNNELGE
                     QANNQSAVLCYGDLEKLHTAFSQHTNPIGKIKIGLNPEQEGEQANLLLHTFPNLRLRL
                     DANRLWSLEQAVKFAEKIANEHKPRIQFIEEPCQALELSRQFATQTDIAIAWDETVRE
                     ANFLVKKEPNLTAIIIKPTLVGSLEKCVNLIQQAQKQGLVAVISSSLESSLGLTQLAR
                     IAQQYTPNSVPGLDTLNLMQHQLLRDWHDSSLPLVGLESEFVREVVV"
     gene            10961..11662
                     /gene="rsuA"
                     /locus_tag="PXE92_000299"
     CDS             10961..11662
                     /gene="rsuA"
                     /locus_tag="PXE92_000299"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HDL5759591.1"
                     /translation="MRLDKFIAENTGLTRSQAAKVLKSGVVTVNGNIEKSGAAKISQE
                     DEIYYEDQKLEWVEEGQYFMLYKPQGYICSHDDGEYPTVFQFFDYPLMTKLHTAGRLD
                     VDTTGLVLLTDDGKWSHRITSPKHHCEKTYLVTLADPVEDFYAQRLAEGILLRGEKEP
                     TLPAQLEILDDYNVNLTISEGRYHQVKRMFAALGNKVEALHRWRIGDVVLDERLEEGE
                     FRSLTSEEIASFNGK"
     gene            11652..12833
                     /locus_tag="PXE92_000300"
     CDS             11652..12833
                     /locus_tag="PXE92_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HDL5759592.1"
                     /translation="MESRRPSLSFFIILGMMAMLPPLAIDMYLPSFLDIARDLAVSQE
                     KVQTTLAVFTLGFGAGQLFWGPMADSFGRKIIILIGLVGSAIAAYFLTQVQNIETFYL
                     LRLVQGLCAAAPAVVLGALVRDLFERNLFAKLMSVIMIISMLAPLLAPIVGGYIAKYF
                     HWHSIFYVLVAMGILCVVLISWKIPETLAPEKRLPLSFGKTLSNFAILLKHRPTLGYV
                     LIGGLTFAGIFCFLTSGSIVYIGLYGVSQENFGYFFGLNMIVMVTMTAINSKMVVKVG
                     SETMLRIALAMQLLAGIWLALVAIFDLGFWAMAIGIPLYIGMLSTIGSNASAAILEQF
                     PQMAGTANGVAGTARFGVASLVGAGLSHIAVTSAAPMLLAMALCVMLAGVVYYFLCYK
                     R"
     gene            complement(12973..14292)
                     /gene="rlmD"
                     /locus_tag="PXE92_000301"
     CDS             complement(12973..14292)
                     /gene="rlmD"
                     /locus_tag="PXE92_000301"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HDL5759593.1"
                     /translation="MAIFYSEKSAKKPIKSPACQKATIQSLDYQGLGIAKINGKTWFI
                     ENALPDEQVEFKVLEEKRQYGRGQAVKILKKSANRRMPSCELYGQCGGCQMQHISLEL
                     QRKAKQQALFQRLQKLQTHAIDVQPMIIGNDKHYRRRAKLSIAIQQGKAVIGFRLQNS
                     NQIIPLAHCEVLVEPLANLLPKLKHLIENWQQPKKLGHIELVSADNTIALFFRHLGAL
                     SAQDNHNLRQFATQEQLSLFVMTSENHIEHLCGERPYYQIQGLKLHFSIRDFIQVNAT
                     LNEKMVEKALEWLELSNQDRVLDLFCGMGNFTLPIAERAKSVVGVEGVEPMVQQAREN
                     AVTSGLKNVEFYQTNLDEPFSDKPWAKEPFNKVLLDPARNGALFCLDHLTSLNPERIV
                     YVSCNPATLVRDAEKLLQLGYRLEKAAMIDMFPHTGHLESISLFLKS"
     gene            14377..15702
                     /locus_tag="PXE92_000302"
     CDS             14377..15702
                     /locus_tag="PXE92_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase
                     family protein"
                     /protein_id="HDL5759594.1"
                     /translation="MISSVWNERYLADKKREQDHRSPFQRDRARLLHSEAFRCLQAKT
                     QIHAVGEDDFYRTRLTHSLEVAQIGSSLREKLLADVEGFQAVCSEQEFAKNMANLTAL
                     LPDHSLVESLCFAHDLGHPPFGHGGEMALNYKMYAFGGFEGNAQSFRIMTQLEPYTET
                     AGMNLTRRTLLGVMKYPALLSQTSPIEPAEMSEARHINLHHFPQSKGIFDDNNHFFEW
                     VLAPLSEKDRRQFCTVQPNQDPKQPNKTQYKSLDCSIMELADDIAYGVHDLEDAIVGG
                     MVTPQSWQNAEKLLAECQSDWVKQRLPEIREKLFSQHRYERKDVIGALVNHFITNVRW
                     KALPEFDEPLLRYNAYLPESVACVLKILKDFVYQYVICDAKTQRVERKGQRILMELFD
                     ILSSDPMRLLPNNVRERWKNAEESKRARVICDYLAGMSDGQAFKLFESL"
     gene            15823..16122
                     /locus_tag="PXE92_000303"
     CDS             15823..16122
                     /locus_tag="PXE92_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759595.1"
                     /translation="MRFLPSEIYQPRGELVKADRQGNGEFEVEYRVSGNDVRGLAKSA
                     IAHAKRKGFHLVESDIHRDDADLKFKRGDQELDIEIEVKGRNRIEYKADLDLDKN"
     gene            16283..19195
                     /gene="rapA"
                     /locus_tag="PXE92_000304"
     CDS             16283..19195
                     /gene="rapA"
                     /locus_tag="PXE92_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HDL5759596.1"
                     /translation="MFLVGQRWLSESENNLGLGIVTSVDHRTVTINFPAAEEERVYAI
                     AVAPLTRVQFQAGDRINSIDGWQLEVSEVVENQGAVIYLGKRVDNGEEAVLPEMLLDH
                     KISFSKPQDRLFSAQIDRSDRFALRFNALQHQQAQYQSPLRGLRGIRASLIPHQLHIA
                     KEVGQRLAPRVLLADEVGLGKTIEAGMILQQQLFSGRAERVLVLVPESLQHQWLVEML
                     RRFNLKFSLFDEERCSDFDKQDENGDDVSENPFESEALVITSLNWLETSPQRANQVLA
                     ADWDLLIVDEAHHLEWSETESSIGYQLVERLSQQIPAVLLLTATPEQLGQESHFARLA
                     LLDSDRFYDYAEFVQEQAQYKPVADAVSSLLSDKPLSNDEQNAIAELLSEQDTEPMFR
                     AINSKKSDENDRLQARQELISELIDRHGTSRVLFRNTRQGVKGFPHREYHQISLEMPK
                     QYQNALKVMGMMGSVSQSDLLYPEYLFQRMNPNAKWAEFDPRIDWLITFLKNHRDEKV
                     LVICKQADTAIALEQVLREREAIRSAVFHEKMSIVERDKAAAYFAQQEEGAQVLISSS
                     IGSEGRNFQFAKDLVLFNLPDNPDLLEQSIGRLDRIGQKNDIQIYVPCFNLSAQQMLA
                     EWYHKGLNAFEETCPMGTAIFRELGEELQQFLQKPELSAQFDDFVAKTYKRQQYLKAE
                     LEKGQDRLLELNSNGGEAAQQLANDIAKEDNNPQLVNFALSLFDVIGVEQEDLGEQSI
                     VISPTGHMLVPDFPGLSEDGTTITFNRELALMREEVEFLTWDHPMIRNGIDLITSGDI
                     GKSAISLLVNNKLPAGTLLLEALYVVEAQAPKGLNLTRFLPPTPIRVLVDNKGNNIAP
                     QVSFAGLERQLKPVNKQMANKIAKMARADIEKLIKASEKAVEPQVQQVIETAKFEANS
                     KLKAELHRLESLKMVNKNIRADEVEALEQQLNASLAQLETANYRLDSLRVIVSNKA"
     gene            19322..19618
                     /locus_tag="PXE92_000305"
     CDS             19322..19618
                     /locus_tag="PXE92_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5759597.1"
                     /translation="MYIDLQYAVPLLFEYDPNKSQINLAKYGIDFEQAKLLWEDERKV
                     VLEACIEPELRYFLIGKIYDKYWTAFFTPRNDVIRLISVRRSRKKEISYYEKYH"
     gene            19602..19844
                     /locus_tag="PXE92_000306"
     CDS             19602..19844
                     /locus_tag="PXE92_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HDL5759598.1"
                     /translation="MRNTISAEELERIFDEGKEDILQYCDLSTAHRPGQMKRVNVDFP
                     NWMVEALDKQARHLGVPRQALIKMWIAEKLPVQSPR"
     gene            19856..20524
                     /gene="rluA"
                     /locus_tag="PXE92_000307"
     CDS             19856..20524
                     /gene="rluA"
                     /locus_tag="PXE92_000307"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HDL5759599.1"
                     /translation="MALIEYNPPLEPFLDEVYRDNHILVINKPSGLLSVPGNRPEYYD
                     SAMTRVQQKYGFTEPAHRLDMATSGILLFALSKAAEKELKRQFREREPKKHYIALLWG
                     KLGEKVGDKGEMNFPLICDWENRPRQKICYERGKKAITHYEVLAHYPNNIARVKLTPI
                     TGRSHQLRVHSLALGHPIIGDKFYANPLAKSLSPRLCLHAESLTITHPITRELMTFTA
                     EPTF"
     gene            complement(20502..21077)
                     /gene="ampD"
                     /locus_tag="PXE92_000308"
     CDS             complement(20502..21077)
                     /gene="ampD"
                     /locus_tag="PXE92_000308"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HDL5759600.1"
                     /translation="MPNLKIEQGCLTGQKQVPSPHFSQRPDQEDISLLVIHYISLPPE
                     EFGGNFIDLFFQGKLEPTAHPYFEEIKDLRVSAHCLINREGEITQYVNFNDMAWHAGV
                     SCFEGREKCNEYSIGIELEGSNNQPFTQAQYQSLANLTKAIQQSYPQITDERITGHCH
                     IAPERKIDPGQYFDWAYYKHLLNEAKKSAQQ"
     gene            21137..21979
                     /locus_tag="PXE92_000309"
     CDS             21137..21979
                     /locus_tag="PXE92_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HDL5759601.1"
                     /translation="MLSYRHSFHAGNHADVLKHIVQLLILRALKEKEKGFLYLDTHSG
                     VGRYSLLSFESEKTGEYLEGVARLWERDDLPEEVAFYIDELKKLNRGGKLKYYAGSPL
                     LAVQQLREQDRAILTELHPNDFPLLRQEFAKAKNVQTKRENGFQQLKSALPPKERRGF
                     VLIDPPYELKEDYELVVKAIEEGYKRFATGVYAIWYPVVLRQHTKRIVRGLMDTGIRK
                     ILQIELAVRPDSDQRGMTASGMIVINPPWQLETQMKKILPYLTEVLVPEGTGSWKVEW
                     ITPE"
     gene            22102..22743
                     /gene="pyrE"
                     /locus_tag="PXE92_000310"
     CDS             22102..22743
                     /gene="pyrE"
                     /locus_tag="PXE92_000310"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDL5759602.1"
                     /translation="MQQYKHDFIEFALSRNVLKFGEFTLKSGRISPYFFNAGLFNTGR
                     DLAKLGEYYAKAIQASGIEYDVLFGPAYKGIPIATTVAVALANLFDVDKPCCFNRKEA
                     KDHGEGGNLIGSPLTGKILLVDDVITAGTAIRESMEIINANNAQLAGVLIALNRKEKG
                     KGELSAIQEVERDYGCQVFSIVDFDDLVAFIETSPQYAPYLPKMREYREKYGV"
     gene            22917..24006
                     /locus_tag="PXE92_000311"
                     /pseudo
     CDS             22917..24006
                     /locus_tag="PXE92_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607068.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
     gene            complement(24071..25261)
                     /gene="metC"
                     /locus_tag="PXE92_000312"
     CDS             complement(24071..25261)
                     /gene="metC"
                     /locus_tag="PXE92_000312"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HDL5759603.1"
                     /translation="MSNYKNLSTKLVHTGRKKRNTQGAVNPVIQRASSLVFETLEEKK
                     HATQNRYKGALFYGRRGTLTHFSLQEAMCELEGGAGCYLYPCGAAAVTNAILAFVEQG
                     NHVLMTGAAYEPTQEFCNALLKRMGVSTTYYDPMIGEGLKALVQPNTKVLFLESPSSL
                     TMEVPDIPTLVRVAREINPEIVIMIDNTWSAGVLFPALEYGIDISIQAGTKYLVGHSD
                     VMIGTAVSNARCWDKLREGSYLMGQMVDADSAYITARGLRTLGIRLKQHEQSSIAVAN
                     WLAQRPEVKAVYHPALESCPGHEFFKRDFLGSSGLFSFELCEKLSNDKLANFLEHFEL
                     FSMAYSWGGFESLILANQPEEIAKIRPAIERKLTGTLIRIHVGLEAVEDLIADLEQGF
                     NRIR"
     gene            complement(25320..25859)
                     /gene="dsbB"
                     /locus_tag="PXE92_000313"
     CDS             complement(25320..25859)
                     /gene="dsbB"
                     /locus_tag="PXE92_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HDL5759604.1"
                     /translation="MLYFFKNLSQSRSAWFLLMLSCLILEGTALYFQHGMGLVPCVMC
                     IYERVALFGILFAGILGFLGNRYAIIRYLAILIWLGSAFKGLVLSIKHHDYQVNPSPW
                     NQCEFKVNFPQTLPLDQWLPQVFAPGPVNCSQSQWEMFGFSMAQWLIFTFAVYLIVAV
                     IVLISQFKRSRQRNNFMFR"
     gene            complement(25922..27463)
                     /gene="nhaB"
                     /locus_tag="PXE92_000314"
     CDS             complement(25922..27463)
                     /gene="nhaB"
                     /locus_tag="PXE92_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proton antiporter NhaB"
                     /protein_id="HDL5759605.1"
                     /translation="MSSIDALFKSFLGKSPEWYKLCILAFLIINPLIYFFINPFVAGW
                     FLVAEFIFTLSMALKCYPLQPGGLLAIEAVVIGMTNPHHIKEEIMANFDVILLLMFMV
                     AGIYFMKQLLLYIFTKLLVAIHSKKILSLSFCLSAAFLSAFLDALTVIAVIISVGTGF
                     YGVYHKVASGNNFEDSTDITNDEKIISNKEILEQFRGFLRSLLMHAGIGSALGGVMTM
                     VGEPQNLIIASQAEWGFIEFLLRALPVSLPVLICGIATCFLVEKYKLFGYGDRLPSKV
                     WGVLARYSQLKEQKMTKQDRLKMLVQAIAGIWLIIGLALHLADVGIIGLTIIIICTAF
                     CGITDEHTLGKAFQESMPFTALLIVFFSVVAVIIDLKLFEPIIAFVLSAEPHSQLSLF
                     YIFNGLLSMISDNVFVGTVYINEAKTALDAGIIDREQFDLIAVAINTGTNLPSVATPN
                     GQAAFLFLLTSSFAPLIKLSYGRMVYMALPYTIVLSIVGFLGLEFLLPSMTEVMINWG
                     WFITR"
     gene            27620..28345
                     /gene="fadR"
                     /locus_tag="PXE92_000315"
     CDS             27620..28345
                     /gene="fadR"
                     /locus_tag="PXE92_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HDL5759606.1"
                     /translation="MGHSDILKAQSPAALAEEYIVKSIWNNHFPAGSDLPAERELAER
                     IGVTRTTLREVLQRLAREGWLSIQHGKPTRVNDIWETSGPNIIGTIIKLDKSYLPVVI
                     ANVVSLRTRMAEAYIPEAIYLAPEESAKLFDGLDELENTAAAYAEFDYKLFRQFTFLA
                     NKPVYALILNSFKSMYHQVAKIFFADENNRQLTLSFYRSLLCTCLAKDSEKAAACMAK
                     NRQSSGEIWQKLSANIPESFGQL"
     gene            28360..29430
                     /locus_tag="PXE92_000316"
     CDS             28360..29430
                     /locus_tag="PXE92_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HDL5759607.1"
                     /translation="MNEIIFSLEPQDNARLQSLCGAFDEHLALIEKSFNLIIARTGFN
                     FTIQSEDDNHYSATLVQNSVKLIKQLYNETAPIKGKIKELDLEDIHLAIQESRMLLQN
                     QWQAGSQGEIAIKTKRGVIKPRSEHQQAYLRNILSHDISFGIGPAGTGKTFLAVAAAV
                     ESLERQEIRRILLTRPAVEAGEKLGFLPGDLGQKIEPYLRPLYDALFEMLGFEKAQKL
                     MERGVIEIAPLAYMRGRTLNDAFIILDESQNTTTEQMKMFLTRIGFNSKAVITGDITQ
                     VDLPRSQKSGLKHAMEVLKEVPELSFNFFDSKDIVRHPVVAKIVQAYDAWEAVDEERK
                     EQRKLEKLALEQEKILAQAEML"
     gene            complement(29556..31562)
                     /gene="tkt"
                     /locus_tag="PXE92_000317"
     CDS             complement(29556..31562)
                     /gene="tkt"
                     /locus_tag="PXE92_000317"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDL5759608.1"
                     /translation="MTERKVLANAIRFLSMDAVQKANSGHPGAPMGMADIAEVLWRDF
                     LKHNPTNPKWADRDRFVLSNGHGSMLIYSLLHLTGYDLSIEDLKQFRQLHSKTPGHPE
                     YGYAPGVETTTGPLGQGITNAVGIAIAEKTLAAQFNREGHKIVDHYTYAFLGDGCLME
                     GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTAQRFESYGWQVIRNVDG
                     HNPEQIKFAIENAQAETERPTLIICKTIIGYGSPNKSNSHDCHGAPLGDAEIQAAREF
                     LGWEHAPFVIPAEIYTEWDAKAKGTLAEKDWNAKFAAYEAAYPELAAEFKRRYAGELP
                     ANWEAESKAFIEKLQANPATIASRKASQNAIEAYAPILPEFLGGSADLASSNLTLWSG
                     SKPIRAEHNVDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFYEYAHNAVRMA
                     ALMKQRALFVYTHDSIGLGEDGPTHQPVEQTASLRQIPNLETWRPADQVESAVAWKAA
                     VERKDGPTALIFTRQNLAQQQRTAEQLANISRGGYILRECCEKGSCPDLILIATGSEV
                     DLAMKAADVLDAEGVKVRVVSMPSTNVFDKQDEAYRESVLPRSVTKRVAIEAQLADFW
                     YKYVGFDGRIVGMNSFGESAPADQLFKLFGFTVENVVAKAKEIL"
     gene            31920..32132
                     /gene="rpmE"
                     /locus_tag="PXE92_000318"
     CDS             31920..32132
                     /gene="rpmE"
                     /locus_tag="PXE92_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HDL5759609.1"
                     /translation="MKQGIHPEYKEITATCSCGNVVKTRSTVGKDLNLDVCGNCHPFY
                     TGKQRVVDTGGRVERFNKRFSIPSSK"
     gene            complement(32187..33242)
                     /locus_tag="PXE92_000319"
     CDS             complement(32187..33242)
                     /locus_tag="PXE92_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5759610.1"
                     /translation="MKSLVIKLFGTKKEKKTFKFSKIESVLLKPIGDAIGDAVVHIAH
                     LEQIKKALPNVKIAVLVTSRNKLIFSQANVVDMILEDKVSTYLSQRGHWDLYLDFKPT
                     FTTKSIILDSILKPKFIINFGKKQKSIYNLDTVKNYDFTTVFPKQVHFADYLNYAIFA
                     DFLEKNQVNYNLNIPNELSSFANTLWQEKKIRLLLNPQGSMREISTQELSELLSMIDK
                     RYVQHISCLLTNTTNSAEYLSKIKAPFEISLAPNSDILGYCALVNSADIVIAVDGGGV
                     HISCALGKKLLSFYANHPANIARWYPKPKKDVETFMVIADKWTEDNNDTRGFSLVAPA
                     KWLNHQFAKLIEKYTAC"
     gene            33290..34321
                     /locus_tag="PXE92_000320"
     CDS             33290..34321
                     /locus_tag="PXE92_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5759611.1"
                     /translation="MNIKATLRKARLVIGKAILDSKNTDLILSEIPNKILFLRHDGKI
                     GDYVVSSFVFREIKKQSPQTQIGVVCSQKNRYLFENNPYIDKLYLVKTKSIPDYIRGG
                     KQLAKEQYDVVIDPTVTLRNRDLLFLRTISAKHYVGYQKQKYRLFDLNVEDRKQHFSE
                     IYQDALALIGFENIETQYDVPLNATSNQSIKHYLYENQIRNYIALNLFGAGSARRFSE
                     QKINELLSCLKQHSDKPIVLLTFPEVTAKLCSFTKKYKNIFVYEKTKSVFDSIELIRF
                     ADLLISPDTATVHIASGLSKKIIAFYSSDEQNFIHWHPNNQAETHILRFRKSVNDLDF
                     AAIKPEWLK"
     gene            34323..35213
                     /gene="ilvY"
                     /locus_tag="PXE92_000321"
     CDS             34323..35213
                     /gene="ilvY"
                     /locus_tag="PXE92_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HDL5759612.1"
                     /translation="MDFQSLKLFLDIAQSRSFIRSAEKNYMTASTLTRHIQRIEEELG
                     QPLFLRDNRQVRLTEAGERFLAFAQQGWAEWQQLQNQLSPAQGDLEGELKVFCSVTAS
                     YSHLPPILGKFRQKYPKVDIKLSTGDPALALEQVQSLAADISVAGKPEFLPNNIVFHY
                     IDDIQLSIIAPRVASQATQFLQQSPIDWKNIPFILPVNGPVRKRIDRWFKEQKIKDPI
                     IYATVSGHEAIVPMVALGFGVALLPDIVIKHSPMNNQVSYVNLPSPITPFELGICVQQ
                     KRLQEPIINAFWQLLSDNSA"
     gene            complement(35347..37749)
                     /gene="lon"
                     /locus_tag="PXE92_000322"
     CDS             complement(35347..37749)
                     /gene="lon"
                     /locus_tag="PXE92_000322"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HDL5759613.1"
                     /translation="MAPRKKKAIELPLLPLRDVVVFPYMVMPLFVGREKSIQALRSAM
                     DSNKQLFLVTQQDPNKEEPNAEDMYGVGVIANIIQMLNLPDGTVKVLVEGQTRAKIEQ
                     IHDDENGFWAAIQPIYSEYDDENEELKAIAKTTLTEFENYVKNNKKIPAEIIAKLQKI
                     TLEDRLADTIASNLIAPVKKKQELLEQPNLIARFEALLIAMATEMDTLETETRIRNRV
                     KQQMEKNQRDYYLNEQIKAIQKELGNGDDVEQSELDKLKEKIDAAKLPTEVKDKLNTE
                     FKKLKAMPQSSSEATVVRGYIDWILQMPWHKKSAVKKDLAQAQEILDKDHYGLERVKE
                     RIVEYLAVQSRLNKLKGPILCLVGPPGVGKTSLGQSIANATGRKYVRMALGGVRDEAE
                     IRGHRRTYIGSMPGSLMMKMAKVGVRNPLFLLDEIDKMAQDMRGDPASALLEVLDPEQ
                     NKAFNDHYLEVDYDLSDVMFVATSNSMNIPPALLDRMEVIRLSGYTEDEKMHIARGHL
                     LAKQQENNGLKEGELTIEDSAILSIIRYYTREAGVRSLEREIAKICRKAVKALVLDKK
                     LKSITVSEKNIEEYLGVKRFDYGKMDSQNRIGEVTGLAWTEVGGDLLTIETASVAGKG
                     KFSYTGSLGDVMKESIQAAMVVVRSRAEKLGIAEDFHEKRDIHVHVPDGATPKDGPSA
                     GIAMCTALISSLTGNPVRKEVAMTGEISLRGKVLPIGGLKEKLLAAHRGGITTVIIPK
                     ENEKDLEEIPENAKAALDIHAVETIDEVLALALENPPMGIEILSKAEIKVKKSRAKAT
                     VQ"
     regulatory      37953..38071
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            38247..39344
                     /gene="ribD"
                     /locus_tag="PXE92_000323"
     CDS             38247..39344
                     /gene="ribD"
                     /locus_tag="PXE92_000323"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDL5759614.1"
                     /translation="MTDVQYMAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQ
                     KAGSWHAERNAILNCEEDLTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRD
                     PNPLVSGKGAAQLRAAGIEVVEDFMRTECDALNPIFFHYIQTKRPYVLLKYGMTADGK
                     IATYTGNSKWITGEAARANVQKSRHEYSAIMVGVETVLADDPMLNSRMENAKQPVRIV
                     CDSQLRTPLDSQLVQTARQYRTIIATLNNDAKKQAEYTACGVEILVTGERDKRVDLAD
                     LLQKLGELGIDSLLIEGGSQLNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIG
                     ELAQAVKLRLKSTELLGEDILLDYEVDLLRN"
     gene            39561..40208
                     /gene="ribE"
                     /locus_tag="PXE92_000324"
     CDS             39561..40208
                     /gene="ribE"
                     /locus_tag="PXE92_000324"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDL5759615.1"
                     /translation="MFTGIIEEVGQIAQIKKQGEFVVVTVKAKKILTDVHLGDSIAVN
                     GVCLTVTSFTQEQFTADVMSETLKRTSLGELSINSSVNLERAMAANGRFGGHIVSGHI
                     DGTGVVAEITPADNSTWYRIKAEPKLMRYIIEKGSITIDGISLTVVDVDAESFRVSII
                     PHTIKETDLGTKKIGSLVNLENDIVGKYIEQFLLKKEPENPQSKITADFLKNAGF"
     gene            40227..41426
                     /locus_tag="PXE92_000325"
     CDS             40227..41426
                     /locus_tag="PXE92_000325"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HDL5759616.1"
                     /translation="MFKFSTVEEAIQAIAQGKIILVSDDADRENEGDFICAAEFATPE
                     NINFMAKYGKGLICTPISTEIAKKLNFHPMVLENEDNHQTAFTVSVDHIQTGTGISAF
                     ERSLTCLKMLDENAKPEDFRRPGHVFPLVAKDGGVLVRNGHTEATVDLARLAGLKPAG
                     LCCEIMAEDGTMMQMPELQAFAQAHNMPFITIQQLQEYRRKHDSLVNVVSVVKMPTKY
                     GEFKAHSFVETISGKEHVALVKGDIGDGENVLCRIHSECLTGDAFGSQRCDCGQQFAA
                     AMNQVEQEGRGVVLYLRQEGRGIGLINKLRAYELQDRGMDTVEANLALGFKDDEREYY
                     IAAQMFEKLGVKSIRLLTNNPAKIEGLIEQGLNVVAREPIMVEPNEHDLEYLKVKQHK
                     MRHMFNF"
     gene            41632..42096
                     /locus_tag="PXE92_000326"
     CDS             41632..42096
                     /locus_tag="PXE92_000326"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDL5759617.1"
                     /translation="MATFQGNYIATGLKFGIVATNWHKIFIDQLLNGATDKLLRHGVE
                     EKNIDTVWVPGALEISIAAKKMAQSGRYDAIICLGAVVRGATSHYDVVVNESAKGISS
                     SALETGVPIINGILTVENLEQAIERSGTKAGNKGEECAMVAIEMANLLKALA"
     gene            complement(42142..43650)
                     /gene="lnt"
                     /locus_tag="PXE92_000327"
     CDS             complement(42142..43650)
                     /gene="lnt"
                     /locus_tag="PXE92_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDL5759618.1"
                     /translation="MNFAKNPPFLTACLLAIILGAIGTFAYSPFDIWILAFASAAGLV
                     WSATLANRKTALWATFAWSIGYFCTGVNWVSVSMTQFGGVPTIVSYIAVFLLACYLAI
                     YNLLFSVVSHRLKLNNPFALAAIFTFTEYLRGVVFTGFPWLQFGYSLIDSPFAGIAPI
                     LGVEGLTFLVIVASSYLVKIIQQENKTVPSLMVLAVIFGLSFATRFLQFVQIDTEKQP
                     LVVSLVQGNIEQKMKWDPQHFNHSVRTYEQLILPLLGNSELIILPESAIPALENQISP
                     LLGSLDHLARQHGSEIIIGTLYQNEQEELFNSSVLLGEKEREYALHSNPRYNKHHLVP
                     FGEYVPFGSVLDWMREVFILPINLSQGSFVQPSFLAKNNRFNMAICYEIIFGDQLQQN
                     QKSQNSDYLLTITNDAWFGSSIGPWQHFQMARMRALELGKPLLRAANTGITAIVDANG
                     KVIEQLPQFTADALTATIVPTKGDTPFKQLGHWLIYSFSLFCVIASLLLRRK"
     gene            complement(43709..44608)
                     /gene="corC"
                     /locus_tag="PXE92_000328"
     CDS             complement(43709..44608)
                     /gene="corC"
                     /locus_tag="PXE92_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249295.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HDL5759619.1"
                     /translation="MSDEQQSVNTTEKSEKKSILHSLFSGLFQNEPKNREDLVEVIRD
                     SVENELIDSDTKEMIEGVMEISELRVRDIMIPRAQIVFIDANEPLDVCIDLIIESAHS
                     RFPVIRGEKDTIEGILHSKDLLKYLRSDSEPFNLQQVLRPAVIVPESKRLDRMLKEFR
                     SERFHMAVVVDEFGAVSGLVTIEDILEQIVGDIEDEFDEEEVKPIRQLSRHTYAVLPL
                     TDIKKFNEFFATDFNDEEVDTIGGLVMQAFGYFPKRDEQIELNGIDFKVTSANSRQLI
                     QLRVTLSDEQLEKMEKTSPNEEE"
     gene            44746..45354
                     /locus_tag="PXE92_000329"
     CDS             44746..45354
                     /locus_tag="PXE92_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HDL5759620.1"
                     /translation="MKLTKIALSLTALVVSSMSVAGTLSTSSMVDILAFDGQRVKSGT
                     TSVQMSENKTHQVVVEVGGTVEGDFFTSDQIILTFQGSAENAKLETPRLNSKLDLRKF
                     QENQTVAIKTDSGKVISHKQDFLKGEGFLAKTRVEDNLTKYNLAKKTASVEQFATAPL
                     EAKGQIVVDTNKVSQEELQLLFRKADKDTQKRFLEWAKKNIK"
     gene            complement(45435..45818)
                     /locus_tag="PXE92_000330"
     CDS             complement(45435..45818)
                     /locus_tag="PXE92_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759621.1"
                     /translation="MKTLKLGCIFSLALMLSSCTLTPEQQAERKAKQIRAEQDLQVQL
                     AKQCDVETAELMYQQFNPPLSQTEQEEKAFKKRYAEKVNAPMFQACYKLAWQNYKAQV
                     ELEEIRWNYDRDYMYRGWRYCYYCW"
     gene            complement(45848..46417)
                     /locus_tag="PXE92_000331"
     CDS             complement(45848..46417)
                     /locus_tag="PXE92_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HDL5759622.1"
                     /translation="MNETTINDFSLLCRLFGNLFYRHPTDPILAGTFNWLAQGGLRQV
                     WALNTDSQSENALTLLQKNANPTQLAASYQALFAENGAISPTISAYGLSVNNFVAFRQ
                     ERAMPELENADHIGLLFLTASWIEDNLDSALAQKILFEQFLLPCAGKFLGKIEAFDNG
                     FYKALAQLSRDALSAMADELEESELEAVE"
     gene            46476..47321
                     /gene="nfo"
                     /locus_tag="PXE92_000332"
     CDS             46476..47321
                     /gene="nfo"
                     /locus_tag="PXE92_000332"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HDL5759623.1"
                     /translation="MKYIGAHVSASGGVENAVLRSVEIGANAFALFTKNQRQWQAPAL
                     KAETIEKFKRFCKVHHFSAEQILPHDSYLINLGNPEAEALEKSRVAFIDEMSRANQLG
                     LKLLNFHPGAHLKQISEQDCLARIAESINIAVEKVPNVIAVIENTAGQGSNLGWHFDH
                     LATIIEQVEDKSRVGVCLDTCHLFSAGYDISSYEKSEAVFNDFNQTVGFHYLRGMHLN
                     GSKTPLGSRVDRHHTLREGTIGTEVFAFIMQNMHFNHIPMILETISPEIWADEIKFLR
                     TLELK"
     gene            47449..48021
                     /locus_tag="PXE92_000333"
     CDS             47449..48021
                     /locus_tag="PXE92_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5759624.1"
                     /translation="MKKNLFATTFKPVFIASILSVFGGYSSIAVASLSSKPATPNQII
                     ASKAERLAKSSSVFTNRANLPTSSAHTANYSGRINSVYHNWVGTRYRLGGTTKAGIDC
                     SAFVREVMGKAFSKDMPRSTAEQRHVGHSISKSDLRPGDLVFFRKNNHVGVYIGNGKF
                     VHASSSRGVTTSSLSESYWSRNYTQSRRVI"
     gene            complement(48088..48546)
                     /locus_tag="PXE92_000334"
     CDS             complement(48088..48546)
                     /locus_tag="PXE92_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5759625.1"
                     /translation="MASIRQISDQTAAYQPIPLYRDFNSSRSVKLDLNSLCIKRPRDT
                     FFIHVKNPNLIAWGIELDDLLIVEQTNQYLVNDLLVLEKDGEYKFYQFFNEIQNGEGI
                     AEKILFSLDVSESNLRITDWAEVKIAGVITNVVHQMRTRGAFTQAKQRVA"
     gene            complement(48720..>49089)
                     /gene="grcA"
                     /locus_tag="PXE92_000335"
     CDS             complement(48720..>49089)
                     /gene="grcA"
                     /locus_tag="PXE92_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HDL5759626.1"
                     /translation="QITESSNSNLLNSFWLLDEAKNEARCLAAKAGFEEDQVVAISEL
                     GDIAYREVPVNVAPTIKVEGGQHLNVNVLRRETLEDAIQNPEKYPQLTIRVSGYAVRF
                     NSLTPEQQRDVITRTFTESL"
BASE COUNT        14382 a         9609 c        10679 g        14419 t
ORIGIN      
        1 caaaaacact attttttctg cttttaatag tttgatcaaa aaatacgtaa aatcttgttg
       61 tgttactgtt tcccatcgct aatatagcat agcttgttag ataattcttt aaaggagatt
      121 actatggcta tgccatctca acgtttttct cttacttggg tactaaattt atttggtact
      181 gcggtaggag ccggcgtttt atttttgcca attaatgcag gtatgggtgg gttctaccca
      241 cttattatta tgactttgtt agttggacca atgacatatt tagctcaccg tggcttaaca
      301 cgttttgtgc tttcttcaaa atacaaaggg agcgatatta cggctgttgt tcgtgaacat
      361 tttggtgaac aggccggtaa attgatcacg ctactgtact tctttgccat ttttccgatt
      421 ttactgattt atggtgtagg tattaccaat accgtgagtt cttttatgga gaatcagctt
      481 catatcgcgc caccatctag ggctgtatta tcgtttatgc taatagctgc tatgatcgga
      541 gtaatgttat taagtgagca agtcatgtta aaaatcacaa cttgtcttgt gtatccatta
      601 gtgttgattt tattgggctt atctatttat ttaattccac agtggaatac agctgcctta
      661 cagcaaatgc caactacagg agacttcctt actacacttt ggctgactat tcctgtttta
      721 gtctttgctt ttaaccattc accggctatt tcttcttttg cactttctca acagaaatat
      781 taccaagatg acaagaaggc tgaaattgaa tcagctaaag tattacgttc taccgccttt
      841 atcttggtgt tatttgtgat gttctttgta tttagctgtg tattaacttt gacacctgaa
      901 gaattagcac aagctaaagt gcaaaatatt tcgattcttt cttaccttgc gaataaattt
      961 gataatccga ttatttccta ttttggaccg ttggttgctt ttttggcgat tggtagctct
     1021 ttctttgggc attatttagg tgcgcgcgag gggttagaag gattggttaa tcaaatgcgt
     1081 aaagagccga ttgatccaag caaattccgc aaaattaccg ctattacttt tttgatcatt
     1141 ttatggattg ttgcgactat caatccaagc attttaggct tcattgaaag ccttggtggg
     1201 ccgattattg cgatgatctt gtttattatg cctgtctatg ccgtatataa agtaccggca
     1261 cttgcacgtt ttaaaggtga atttggccat ttatttgtgc ttgttatggg ttgtattgct
     1321 atttcagcaa tagtatatgg gttactgtaa tctttctaaa atcaatgtag aatacgccct
     1381 tttattttct atgtgaattt gtgtttatga ttagtgtatt tgatatgttt aaagtaggga
     1441 ttgggccttc cagttcccat actgcggggc cgatgaaagc ggcaaaggaa tttgtcgatg
     1501 aattacaaaa tcgcaaattt ttaaacaaaa ttgaccgctt gcgggtagat gtctatggtt
     1561 cattatcact caccgggcga ggacataata cggatattgc catcataatg ggattaatgg
     1621 ggtatttgcc tcataatgtg gatattgaac gtattgagca gacgattgaa aatctaaaac
     1681 aaaataagca acttatcatt gctgaaagca gtgttgagcc taaagtgatt gcgttcgatt
     1741 tttatgagga tatgccattt catcgagatt tcttacctcg gcacgaaaat ggtgtgaaat
     1801 ttagtgcctt gagcggtgaa gagttgctat ttcaaaacac ctattattct attggtggtg
     1861 gctttattgt tgatgaagct aactttgagc aagttaaaaa ttcagatctt tctgttccat
     1921 tcccatatca gaatgcagca gatttacttg cacattgtaa gaataacggg ttaccgcttt
     1981 cttctttagt ctggaaaaat gagcttgctt tacgcagtag agtagaaatt tcggattatt
     2041 tggcaatgat ttggaataca atggaagcct gtattgagcg tggtttgaat acggaagggt
     2101 tactacccgg gcctctgaaa gtggtacgcc gtgccagtgg gctacgcaga atgttagagg
     2161 caaacagtaa attcaatacc gacccaatgc aaattatcga ttgggtgaat atgtttgccc
     2221 ttgccgtgaa tgaagaaaat gcggcaggtg ggcgagtagt caccgcacct accaatggag
     2281 cctgtggtat tgttccggct gtgttggcgt actaccaaaa atttattgca cagcttaatc
     2341 aagatactat tgagcgttat ttattgacta ccagtgtgat tggttcgtta tacaaaatga
     2401 atgcctctat ttccggtgct gaagtaggtt gccaagggga agttggtgtt gcttgttcaa
     2461 tggcggcagc aggtttaacg gaaattatgg gtggcagtgc tgaacaggtg tgtatggctg
     2521 cagaaattgc aatggagcac aatttaggcc taacttgtga ccctgttggc ggacaagtgc
     2581 aagtgccttg tattgaaaga aatgcaatcg cttcagtcaa agcgattaat gccagcagaa
     2641 tggcactacg ccgtacttct tcgcctcagg taagtttaga taaagtcatt gaaacaatgt
     2701 acgaaaccgg caaagatatg aatgcaaaat accgtgaaac ctcaaccggt ggcttagcaa
     2761 tcaaaatttt accttgtgat taattaatga aaaaggctac cttatcaaaa taaggtagcc
     2821 ttttagtttg tagaacatta atgacggaaa tgcctcattc cggttagtac cactgccata
     2881 ccgtgttcgt tggcggcatc aatcacttct tgatcacgca ttgaaccacc tgggtgaatc
     2941 acacaagtaa tccctacttt tgcagcagcg tcaataccat cacggaacgg gaagaacgca
     3001 tcggaagcca ttacacaacc cacaacttgt aagccctcgt cttccgcttt aatacctgca
     3061 atttttgcgg aataaacacg gctcatctgc cctgcaccga taccgatagt ttgcccgtct
     3121 ttggcataca caatcgcatt cgatttcaca tatttcgcca ctttccagca gaacaatagg
     3181 tcttttagct cagcttcagt tggtttacgc tctgaaacca cctttaaatc gtcaatagat
     3241 acagagcctt ggtcggcatc ttgcactaat aatccgccgt ttacccgttt gaaatctaag
     3301 cgttttacag cttctgagaa ctcgccacat tcaagcacac gcacgttttt cttagtggct
     3361 aacacttctt tggcagaagc agaaacggtt ggtgcaataa tcacttcaac aaattgacgg
     3421 tctgcgatgg tttgagcagt ttcgccgtct aattcacggt taaaggcaat aatgccaccg
     3481 aaagcagaag ttggatcggt ttggtaagca cggttgtagg catctaaaat atttttaccc
     3541 aaagcaacac cacaagggtt agcgtgtttt acaatcacac aagcaggctc gctaaattct
     3601 ttcacgcatt caagagccgc atcggtatct gcaatattat tatacgaaag ggctttacct
     3661 tgtaactgtt tggcggtgga aacagaggct tcttttaact cattttcgac atagaatgca
     3721 gcgttttgat gcgaattttc gccataacgc atcgtttgtt tacgcacaaa attgaggttt
     3781 aaggtgcgag ggaattgtcc acttggttgg gttaaatctt cttcctcagc cccttgataa
     3841 ggcggcactt tttgcccgaa atagttggca atcattgaat cgtattgtgc ggtatgctca
     3901 aacgctttaa tagcaagatt aaaacgggtt tctaaagtta aactgttttg atgttgatcc
     3961 atttcggcaa gaatagcatc aaaatcattg ttattgacca caatcgccac atctttatga
     4021 tttttcgctg cagaacgcac cattgtcgga ccaccgatat caatattttc caccgcatct
     4081 tcaaggctac aatttggatt ggcaacggtt tgagcaaaag ggtagaggtt tactaccacc
     4141 atatcaattc gttcaatgcc gtgttggttc atcacttcat catcagtacc acggcgacct
     4201 agaattccgc cgtgcacttt cgggtgcagg gtttttacac gcccgtccat catttcagga
     4261 aagccggtgt aatctgatac ttctgttact agcaaaccgg cttcagccag taattttgcg
     4321 gttccgcccg tagaaagtaa ttttacccca cgagccgata gcccacgagc aaattcgaca
     4381 atgccttttt tatcagacac acttaataac gcctgttgaa tcgccattct taaattcctt
     4441 aaaatgagtg ttaacgtgaa aataaacggc aaagattata acgcaaacgt ttgctttttt
     4501 catctacaag tggtcgattt tgcaaatttt tctgcaaaat cgaccgcttg cactcgtgat
     4561 taaagcgggt agaatagagg aaaaaaatcg gaggaactat gattaaccac aatttagcag
     4621 atttcgtatt tgagtatttt accgaaaaca acctaaaagc aggcacacta cgttatcgct
     4681 acataaaaga gaacgtgatt gatgcttaca gtacccgagt agatgatgcc tttcaaggta
     4741 aaggtattgc aggagagctt tacaatgctt taattgcgtt tgcgcaagaa aaagggctga
     4801 aaatcaagcc aagttgtagt tatattgagg taaaaatgca acgaagtcat cgagatttaa
     4861 ttgcttagag aggagcaagc ggtcgtaaaa tttcaaaaat ttacgaccgc tgtcttattc
     4921 aattctcaaa aatccatcac acaaaatata agccctattc attaaacaac gccatataaa
     4981 acttattttc aaatgtatta agcggagccc gtttggtttt gctttcgagc tcgccggtgg
     5041 aatagccgtt aataaattgc acaaaagcga tgcgttcgcc acgggcgttt ttcataaagc
     5101 cggcaaggtt gtaaacccct ttcagtgagc cggttttggc aatcagattt ttggcaagcg
     5161 gttctgttga aatagagcct ctgccggaaa tagtaccgtc cacgcctgca atcgggaagg
     5221 tttcaaacag ttttaagctt tcttcgtttt gagcgatata ttcaagggtc tccagcattg
     5281 ttcggctgct gacttgatta tgacgggaaa gccctgagcc atcagccacc acgctgtttt
     5341 taaaatcaat attggctttg gtttttaata actggcgaat cacataacta cctaattgga
     5401 acgatgcggg gcggttgtgt tgcttgttgg caacggttct aaacagggca tcggcaattt
     5461 ggttatccga ttttttcatc atttttttca ataataccgg caacggctcg gaataatgct
     5521 cggcaagtag cgtgccgttt tgggcagtaa gtggctcttt tacttgcccg ttaaaggcaa
     5581 ttttcaggct ttttaactgg gctttaagca tatttgcccc gtaattagtt gggtcttgca
     5641 ccgaaaaact taagccgaac ggttgagact ggcgagccat acagcctttg atttggtagc
     5701 ggttgttatc gtgaaccacc acatcaagct ggcaaaacgg agcttctttc ggctcgacaa
     5761 tataagcaga gctaaacacc tgcaccggat aagcggacgg cacattcact ttagcaaatt
     5821 cgccaatggg ttggtcggca tttaaggtga cataaaaaca gttgtgatcc acattaattg
     5881 ccgccggtgg ggcgttaaag cacatcgtca agtcgttcca aatccaaccg gaggctttgt
     5941 cgtggctggc gaaaaccgac gggtctagaa ttaaatcccc ctcaatttta ttgatacctt
     6001 gttgctttaa tttgctcatt aattgataaa tttgaccgct tgtaagctca gggtcgccac
     6061 taaaacgggc aattaaattg ccttttaaca ctccgttttc tacttttccg ttggttaaaa
     6121 gggcagtttg aaagcggaaa tcatcgttta aagttaattt tgctgccagt gccgtaaaga
     6181 ctttttgggt actggcaggt agcataaaaa tatcactttg gtattgggtg atgatttggt
     6241 tagtgtctaa atttttagca ataaaactaa cagaagtacc ggcaggcaag gtatttaata
     6301 attcttcggt attaatttca gcctgtgtaa tgcttggaat cagaagtgta gataagataa
     6361 atttatttaa aaaagcacga gtgaaatttt taaaaatcat aataaaaggg gagttgaaat
     6421 ttttagtgag aaattgaata atagcccttt cgttttaatt cgtaaaccga taatttttag
     6481 taaggaaata gatttaatga aacaaattcc tatgacggtg cgtggtgcag agcaactgcg
     6541 tgaagaattg gattttttaa aaaatgtgcg tcgcccacaa attattgatg cgattgcaga
     6601 agcccgtgaa cacggtgatt taaaagagaa cgcggagtat cacgcagccc gtgaacaaca
     6661 aggtttctgt gaggggcgta ttcaagaaat tgaaggcaaa ttaggcaatg ctcaaattat
     6721 tgacgtcact aaaatggcaa acaacggcaa agtgattttt ggggcaacgg tgcagttagt
     6781 gaatgctgat acagatgaag aagtcactta ccgcattgtg ggtgatgatg aagccaatat
     6841 taaagagggc ttaatttcag ttaattcccc gattgctcgt ggtttaatcg gcaaagaggt
     6901 ggacgattca gtcagcatta ccacaccggg tggcaaagtt gagtttgaca ttgttggcgt
     6961 agaatatatt taatctacgc tagggcgaat tacaatagtg gggcgaaaaa attttcgccc
     7021 ctactttatt aaacaatctc actcggtaca aagaagtagg caatttcacg ttttgccgac
     7081 tcttcggaat ctgaaccgtg taccgaattt tcacgcatac ttaaggcata taaatcgcga
     7141 atggtgcctt tttcacggtt atccggattg gttgccccca ttaatgcacg ataatggcta
     7201 attgcatttt ccccttccag tacagaaacg acaatagatc ctgatgtcat aaattccact
     7261 aacggctcaa agaaatcttt gcctttgtgt tccgcataaa atccttccgc ttgctcacgg
     7321 gtaagatgta ctttttttag agctttgata gtcagcccgt tttcttccaa ttgagccaaa
     7381 attttgccga ttaaattacg gcgtgtagca tccggcttaa taatagaaag cgtttgttga
     7441 atcatcatct tctcctattt aacttgcatt cccggctgaa caccgctgtc tgcatctaat
     7501 aagaacaggt tcgcaccgcc tgtgccggca gataaaatca ttccctccga cataccgaac
     7561 gacattttgc gtggagcaag gttggcaatt acaatcacaa aacgcccgat aagtgcttcc
     7621 ggatttgggt aggccgcctt aatgcctgag aatacttggc gttggtggtc gcctaaatcc
     7681 agctcaaaac gtaacatttt gtctgatttt ggcacagcct cgcagttcaa tactttggct
     7741 gcacgtaaat ctaatttcgc gaaatcatca atcgtaattt cagggctgat tggctcaact
     7801 gcaatatttt cttgtttttc gaccgcttgt tgttccactt tttgtgttcc tttggtttgg
     7861 ttttcggttt tcttattcgc ttcggcaaat aaggctttgg tttcatcaat cactgcatca
     7921 atctgttttt tctcaaggcg tgagaatagc gatttaaacg gtgccacggt atgcccgaat
     7981 aatggggtag cgatattatc ccaacgcaat tcgctttgta agaatgcttc ggcacgttct
     8041 gccagttttg gtaacaccgg ttttaggtag ctcatcagca cacggaataa ctcaatgccc
     8101 attgaacaaa ccgcttgtaa ttcagcctct ttgccttctt ctttggcgat gacccaaggg
     8161 gctttgtcgt caatgtattt attggcttta tcggttaatt ccataatggc acgaatagct
     8221 ttattaaatt cacggttttc atagaaattc gctatggttt ctgcttgagc ggtaaattca
     8281 ttaaataacg cttcgtcatc taatttttca gctaatttgc cctcaaagcg tttagcgata
     8341 aaactggcgt tgcgagaagc aagattcact aatttgttta cgatatcgct gtttacacgt
     8401 tgcacgaagt cgtctaaatt aaaatctaaa tcttcaatgc gatcgtttaa ttttgccgca
     8461 tagtaatagc gtaagcattc cggatcgaga tgttttaaat aggtgttggc ttgaatgaat
     8521 gtaccacgag atttcgacat tttcgccccg tccactgtca cataaccgtg agcaaacaca
     8581 ttggtcggtt tgcggtagcc gctgccttcc aacattgccg gccaaaacag gctgtggaag
     8641 taaacaatgt ctttaccgat gaagtgataa agctcggtgg tggaatcttt ttgccaaaac
     8701 tcatcaaaat caatgcctgc acggtcgcat aaatttttaa acgatgctat ataaccaata
     8761 ggggcatcta accaaacgta gaagaatttg ttttctgcgt ccggaatttc aaaaccgaaa
     8821 taaggggcat cacggctgat gtcccattgc tgtaaaccac tttcaaacca ttcttgcatt
     8881 ttattggcaa tttcaggttg gagtgagccg gaacgagtcc actctttcaa cattccctca
     8941 aagcttggca ggtcaaaaaa gaaatgttct gattctttta ccaccggagt tgcaccggaa
     9001 actgccgagc gagggttgat taaatccatc gggctatagg tagaggcaca tacttcacag
     9061 ttatcgccat attgatcttc ggctttacat ttcgggcagg tccctttcac aaagcgatcc
     9121 ggcaagaaca tatttttttc tgggtcgaac agttgtgaaa tcactttgct tttaataaaa
     9181 ccgttcgctt ttaaggtttt ataaatatcg gtagtgattt ggcggttctc ttcgctgtgg
     9241 gtggaatggt aattatcaaa gctgatatta aaactggcaa aatccgcttc gtgatcggct
     9301 ttggcttttt cgattaactg ctcaggggta atgcctaatt tatcggcatt aagcataata
     9361 ggcgtgccgt gggcatcatc agcacagaca aagtggactt cattgccacg catacgttga
     9421 aaacgcaccc aaatatctgc ttgaatatgt tcaagcatat gacctaaatg aattgcaccg
     9481 ttagcatagg gcaaggcaca agtaacaagc atttttcgtt tttggttagc cattcttttt
     9541 ctcattaaaa ttagggtaaa aattgccgtc tattttagcc caaaagtggc aggtttacca
     9601 gttggcgtga atttattaga gctttgggct aacaagcggt agaatatgat gcgctagagg
     9661 cgaaacattt ttcgcctcaa tttcccaaat gatgatgtgg gcgaaagatg tttcgcctct
     9721 aaacctattt tggataaaaa tagtatgcga caagtaaagt tataccgcta ccaactcccc
     9781 attcaaaccg gtgtagtgtt acgcaagcaa cctttgaaag aaaggcaagg ggtgttggtg
     9841 tgtttgcaag aacaggagaa agtcggctgg ggcgaaattg caccgcttcc aagttttagc
     9901 caagagagcc tagaacaagc tgaaaaccaa gctgtgaatt ggttaaaggc gtggcagaaa
     9961 ggagagcctg aaacgttaga gcagcttttc ccgtctgttg cctttgggct aagctgtgcg
    10021 ttggctgaac tgaataatga attaggcgag caagcgaata accaatcggc ggtgctgtgc
    10081 tatggcgatt tggaaaagtt acacacggca tttagccaac atacgaaccc aatcggtaaa
    10141 attaaaatcg gtctcaatcc tgaacaggaa ggcgagcagg caaatttgct gttgcatact
    10201 tttccgaatt tacgcctaag gcttgatgcc aaccgtcttt ggagcttgga acaagcggtc
    10261 aaatttgctg aaaaaattgc aaatgaacat aaaccccgta ttcaatttat cgaagaacct
    10321 tgccaagcgc tcgaactttc ccgccaattt gccacacaaa ccgacattgc gattgcgtgg
    10381 gacgaaaccg tgagagaggc gaattttttg gtaaaaaaag agccaaattt gaccgctatt
    10441 atcattaaac ctacgctggt tggttcgctt gaaaaatgcg tgaatttaat tcaacaagca
    10501 cagaagcaag gattagtagc ggtgattagt tcaagtcttg agagcagttt gggcttaacc
    10561 caactggctc gtatcgccca acaatacacc ccaaacagtg tgccggggtt ggatacgtta
    10621 aatttaatgc aacaccaatt attgcgagat tggcacgact ctagcttgcc gttggtcggg
    10681 ctagaaagcg aatttgttag ggaagttgtg gtataatctc ccaattaaac actctctccc
    10741 cttgtgggag agagaccgct tatgagcgtt cagcgaaata agcagagaga ggggaagcgg
    10801 tcatttttct aaaaaagttt gcacatttcc cctctccctg atttttcttc tggacgaaga
    10861 cgtatttccc ccctctccct gatttttctt ctagacgaag aaaaatctgt ccctctccca
    10921 cgaggggaga gggtaaagta atttatggta taaaaatagt atgcgtttag acaaatttat
    10981 cgccgaaaat accggtttga cccgttcaca agcggctaaa gtgctgaaaa gtggtgtggt
    11041 gacggtaaac ggcaatattg aaaaaagtgg tgcggcaaaa atcagtcaag aagatgaaat
    11101 ttattacgaa gatcagaaat tagagtgggt ggaagagggg cagtatttta tgctctataa
    11161 gccacagggc tatatttgtt cacacgatga tggtgagtac ccaacggtgt ttcaattctt
    11221 tgattatccg ttaatgacta aattgcatac cgcagggcgg ttagatgtgg ataccacagg
    11281 gctggtgctg ttaaccgatg acggcaaatg gtcgcaccgt attacctcgc ccaagcacca
    11341 ttgtgaaaag acatacttag tgacgcttgc tgatccggtg gaagattttt atgcacagcg
    11401 attggcagaa ggaattttat tgcgtggcga gaaagagcca accttgccgg ctcaacttga
    11461 aattttagac gattacaatg tgaatttaac tattagtgag gggcgttatc atcaagttaa
    11521 gcgaatgttt gccgcccttg ggaataaagt cgaggcattg caccgctggc gaattggcga
    11581 tgtggtgtta gatgaaaggt tggaagaagg tgaattccgc tcgctcactt cagaggagat
    11641 agccagtttt aatggaaagt agaagaccaa gcctgagctt tttcatcata ttaggtatga
    11701 tggcaatgtt gccaccatta gccattgata tgtatttgcc ctcattttta gacattgccc
    11761 gtgacttggc ggtttcgcaa gaaaaagtgc aaaccacctt ggcggtattt accctaggtt
    11821 ttggggcagg gcaactattc tggggaccga tggcagacag ctttgggcgg aaaatcatta
    11881 ttttaatcgg attagtcggc tcggcgattg ccgcttattt tctgacccaa gttcagaata
    11941 ttgaaacatt ttacctgcta aggttagtac agggcttatg tgcggcagcc ccggcggtgg
    12001 tgctgggagc attagtgaga gatctgtttg agcgtaattt atttgccaaa ttgatgtcgg
    12061 ttattatgat tatttctatg cttgccccat tgcttgcacc gattgttggc ggttatattg
    12121 ccaaatattt ccactggcac tcaattttct atgtgttagt ggcgatgggg attttgtgcg
    12181 tggtattaat tagttggaaa atccctgaaa cattagcccc cgaaaaacgc ctgccgttaa
    12241 gttttggcaa aactttaagc aattttgcca tcttactgaa acataggcct actcttggtt
    12301 atgtgctgat tggcggctta acctttgcag gtattttctg ttttttaacc tcaggctcga
    12361 ttgtctatat tgggctttat ggcgtgtcgc aagaaaattt cggctatttc ttcgggctga
    12421 atatgattgt gatggtgacg atgacggcga ttaacagcaa aatggtagtg aaagtcggct
    12481 ctgaaacgat gttacgaatt gctttagcta tgcaactgtt agccggcatt tggctggctt
    12541 tagtggcgat ttttgattta ggcttctggg caatggcaat cggtattccg ctttatatcg
    12601 gaatgctttc caccattggt agtaatgcca gtgccgccat tttagagcaa tttccacaaa
    12661 tggcaggcac ggctaacgga gtagcaggta cggctcgttt tggtgttgct tcccttgttg
    12721 gagcagggct ttcacatatt gctgtaacca gtgctgcccc aatgcttttg gcgatggcat
    12781 tgtgcgttat gttagccggt gtggtgtatt attttctgtg ttataagcga taactaggtt
    12841 ggggttagct tgcgaaaacc caacaaattt ctacaagcgg ttaataatag tacatttttt
    12901 gcaaattttt aggcagaatt aaccgcttgt gtggtacgag cgtggacgct cgcaccatcg
    12961 gggcaatatc tactaagatt ttaaaaacag cgaaatagat tccaaatgcc cggtgtgggg
    13021 gaacatatca atcattgccg ctttttctag cctgtagcct agttgcaaca gtttttcggc
    13081 atctcgcacc agtgttgccg gattgcaaga gacataaaca atccgctcag gattgagtga
    13141 tgtcaagtga tctaggcaaa atagtgctcc gttgcgtgcc gggtcgagta gtaccttgtt
    13201 aaacggctct tttgcccaag gtttgtcaga aaacggctca tctaaattgg tttggtaaaa
    13261 ttccacattt tttagaccgc ttgtcaccgc attctctcgg gcttgttgca ccattggttc
    13321 taccccttcc acaccgacca ccgatttcgc tcgctcagca ataggcaagg taaaattccc
    13381 cattccacag aagagatcta acactcgatc ttggttggat aattccagcc actcaagggc
    13441 tttttccacc attttttcat tgagcgtggc attcacctga ataaaatccc gaattgaaaa
    13501 atgcaacttt agaccctgaa tttgataata cgggcgttca ccgcacagat gctcaatgtg
    13561 attttcgcta gtcatcacaa aaagagataa ttgctcttgt gtggcgaatt gacgcaaatt
    13621 gtggttatct tgcgccgata atgcccctaa atggcggaaa aatagggcaa tggtattgtc
    13681 cgcactgacc agctcaatat gccccaattt tttcggctgt tgccagtttt caatcaggtg
    13741 ttttaatttt gggagcaaat tggcaagcgg ttcaaccagc acttcacagt gtgcaagcgg
    13801 tataatttgg ttggaatttt gcaaacgaaa gccgattacc gccttgcctt gctggatcgc
    13861 aatgcttaat tttgcccgac ggcggtagtg tttatcgttg ccgataatca tcggctgaac
    13921 atcaatagcg tgggtttgca atttctgtaa gcgttggaat aaagcctgtt gttttgcctt
    13981 acgttgcagt tcaagcgaaa tatgctgcat ttggcagcca ccgcattgcc cgtaaagttc
    14041 gcagcttggc attcgccgat ttgcagattt tttaagaatt ttaaccgctt gtccacgtcc
    14101 gtattggcgt ttctcttcca acactttaaa ttccacctgc tcatcaggca gggcattttc
    14161 gataaaccaa gttttgccgt tgattttggc aatccctaag ccttgataat ctaacgattg
    14221 aatagttgcc ttttgacaag cgggtgattt tatcggtttt tttgccgatt tttcagaata
    14281 aaaaatagcc attgttttca gatgaattgt tatgatataa agtgtcgaaa tggggagatt
    14341 atataagaaa agcagttggc ggaaaatgga ggcaatatga tttcatcggt ttggaatgaa
    14401 cgttatttgg cggataaaaa acgggaacaa gatcaccgct cgccttttca gcgggatcgg
    14461 gcaaggttat tgcattcgga ggcttttcgc tgtttgcagg cgaaaacgca aattcacgcc
    14521 gtgggggaag atgattttta tcgaacccgt ttaacccatt cgttggaagt ggctcaaatc
    14581 ggtagcagtt tgcgagaaaa attattagcg gatgtggaag gctttcaagc ggtctgttcg
    14641 gagcaggaat ttgcaaaaaa tatggcaaat ctgaccgctt tattgccgga tcatagcttg
    14701 gtggaatccc tttgttttgc ccacgatctc gggcaccctc cgttcgggca cggtggtgaa
    14761 atggcgttaa attataaaat gtacgccttt ggcggcttcg agggtaatgc tcaatccttt
    14821 cggattatga cccagcttga gccttacacc gaaacagccg gaatgaatct gacccgtcgc
    14881 accttactgg gggtaatgaa atatccggca ctcttgtctc aaacctcgcc gattgagccg
    14941 gcagaaatga gcgaggctcg gcatattaat ttgcaccatt ttccacagag caaagggatt
    15001 tttgatgaca acaaccactt ttttgagtgg gtattagccc cgttaagtga aaaagaccga
    15061 cgccaatttt gcacggttca gcccaatcaa gatccgaaac agccaaacaa aacgcaatat
    15121 aaatctctcg attgcagcat aatggaacta gcggacgata ttgcctatgg cgtacacgat
    15181 ttggaagatg cgattgtagg tggaatggtc acaccgcaat cgtggcaaaa tgcggaaaaa
    15241 ttgctggcgg agtgccaatc cgattgggtg aaacaacgcc tgccggagat tcgggaaaag
    15301 ctcttttctc agcaccgcta cgagcgaaaa gatgtgatcg gggcattagt gaatcatttt
    15361 attaccaatg tgcgttggaa agctctgcct gaatttgacg agccgttgct acgttataat
    15421 gcctatttac cggaaagtgt tgcctgtgtg ctgaaaatct tgaaagattt tgtgtatcaa
    15481 tatgtgattt gtgatgccaa aacccagcgg gtggaacgca aggggcaacg cattctaatg
    15541 gaattgttcg atattttaag cagtgatccg atgcgattac tccctaataa tgtgcgggaa
    15601 cgttggaaaa atgcggaaga atctaagcgt gcaagggtaa tttgcgacta tttagccggt
    15661 atgtctgatg ggcaggcgtt taaacttttt gaaagtttat aatgaacttt gttaattttg
    15721 caaggtctca gtaataggtt tcatttattt aataggagat ttcaatgaaa actgtttcta
    15781 aaggtctttt agtattagca actttggctt ctgcaacagc atttgcggtt tcttccaagt
    15841 gaaatttatc agcctcgtgg cgaattagtt aaagcagatc gtcaaggtaa tggtgagttt
    15901 gaagtagaat atcgtgtcag tggtaatgat gttcgtggct tagcgaaaag tgcgatcgcc
    15961 cacgctaaac gtaaaggttt ccatttagta gaatctgata ttcatagaga tgatgctgat
    16021 ttaaaattca aacgtggtga ccaagagctg gatattgaaa ttgaagtaaa aggtagaaat
    16081 cggattgaat ataaggcaga tctagattta gataaaaact aaatttaccc cttaaaacga
    16141 ccgcttgtgt gatttaaccg cacaagcggt ctttttattg tgcttttttg caaaaatact
    16201 caagccgacc ggtcccggaa tttggtaaaa tagccgttta aatgacaata atgatgcttt
    16261 tacttattac ttagaggaaa aaatgttttt agtcggtcag cgttggctaa gtgaatcgga
    16321 aaataattta ggtttgggaa tcgtgacttc ggtggatcat cgcactgtca ctatcaattt
    16381 cccggcagcg gaagaagagc gggtctatgc aattgcagtt gcacctttaa ctcgagtgca
    16441 gtttcaagcc ggagatagaa ttaacagtat agatggctgg cagttagagg tttcagaggt
    16501 tgtggaaaat caaggtgccg taatctattt gggcaaaagg gtggataacg gtgaagaagc
    16561 ggtactgcct gaaatgttgc tcgatcataa aatcagtttc agcaaaccgc aagaccgcct
    16621 tttttcggct cagattgatc gctcagatcg ctttgcatta cgctttaacg ctttgcagca
    16681 ccagcaagcg caatatcagt cgccactgcg tggtttgcga ggcattcgag ccagcctgat
    16741 tccacatcaa ttacatattg caaaagaagt cgggcaacgc cttgctcctc gtgtgctatt
    16801 agccgatgaa gtgggactgg gtaaaactat tgaagctggt atgattttgc aacaacagct
    16861 attttcgggc agagcagaac gagtattggt attagtgccg gaaagtttgc aacaccaatg
    16921 gttggtggaa atgcttcgcc gttttaatct gaaattctcg ttattcgatg aagaacgttg
    16981 tagtgatttt gataaacaag atgaaaatgg cgatgatgta agtgaaaatc catttgagag
    17041 cgaagcgtta gtcattactt cactaaactg gctggaaacc tcaccgcaac gagccaatca
    17101 agtgcttgct gccgactggg atctattaat tgttgatgaa gctcaccatt tagaatggtc
    17161 ggaaaccgaa tcttctatcg gctatcagtt ggtagagcgt ttatctcaac aaattcctgc
    17221 cgtcttgctt ttaacggcaa caccggagca attagggcaa gagagccatt ttgcccgctt
    17281 ggcgttgtta gattcggatc gtttttatga ttatgccgag tttgtacagg agcaagcaca
    17341 gtataaaccg gtggcagatg cggtgagtag cttattaagc gataaaccgc taagtaatga
    17401 cgagcagaat gcgattgcgg agctgttaag cgagcaagat accgagccga tgttccgtgc
    17461 aattaatagc aaaaaatcgg acgaaaatga ccgcttgcaa gcccgtcaag agctgattag
    17521 tgagctaatt gaccgccatg gaaccagccg ggtgttgttt agaaataccc gtcagggagt
    17581 gaaaggcttc ccacatcggg aataccacca aatcagccta gaaatgccga aacaatacca
    17641 aaatgcgtta aaagtgatgg gaatgatggg gagtgtgagc caaagtgatt tgctctatcc
    17701 tgaatatttg ttccaacgaa tgaacccgaa tgcgaaatgg gctgaattcg accctcggat
    17761 tgattggctc atcactttct taaaaaatca tcgtgatgaa aaagtgctgg tgatctgcaa
    17821 acaggcggac actgcgattg ctttggagca agttttgcgt gagcgtgagg cgattcgttc
    17881 tgccgttttc cacgagaaaa tgtcgattgt tgaacgtgac aaagctgccg cctattttgc
    17941 tcaacaagaa gaaggcgctc aggtgctgat tagttcaagc atcggttcag aagggcgaaa
    18001 tttccaattt gctaaagatt tagtgctgtt taatttgccg gataacccgg atttattgga
    18061 gcaaagtatt gggcgattag atcgtatcgg acagaaaaat gacattcaga tttatgtgcc
    18121 ttgctttaat ttatcggctc aacagatgtt ggcagagtgg tatcacaagg gcttgaatgc
    18181 gtttgaagaa acctgcccga tgggaacagc gatcttccgt gaattaggtg aagaattgca
    18241 acaattcctg caaaaacctg aactttcagc ccaatttgat gattttgttg cgaaaaccta
    18301 taaacgccaa cagtatttga aagccgaact ggagaaagga caggacagat tattagaact
    18361 gaattctaat ggcggagaag cagctcaaca gctcgctaat gatattgcga aagaagataa
    18421 taatccgcag ttggttaatt ttgccttgag tttgtttgat gtgattggcg ttgaacagga
    18481 agatttaggc gagcagagca ttgtgattag cccaaccgga catatgcttg tgcctgattt
    18541 cccggggcta tcggaagatg gcacgaccat tacctttaat cgtgaactgg cgttaatgcg
    18601 ggaagaggtg gaatttctca cttgggatca cccgatgatc cgcaatggta ttgatttaat
    18661 cacctccggc gatattggca aatcagcaat ctcattgctg gtgaataata aattgcctgc
    18721 cggtacatta ttacttgagg cgctttatgt ggtggaagca caagcaccga aagggctaaa
    18781 tttaacccgt ttcctaccgc caaccccgat tcgggtttta gtggataaca aaggcaacaa
    18841 tattgctccg caggtctctt ttgccgggct tgaacgccaa ttaaaaccgg tgaataaaca
    18901 gatggcaaat aaaattgcca aaatggctcg agcggatatt gaaaaattaa ttaaagcgag
    18961 tgaaaaagcg gtagaacctc aggtccaaca ggtgattgaa actgccaaat ttgaggcaaa
    19021 tagcaaatta aaagcagaat tacaccgctt ggaatcactc aaaatggtga ataaaaatat
    19081 tcgagccgat gaagttgaag ccttagaaca acagcttaac gcttcccttg cccaacttga
    19141 aacggcaaat tatcgcttag atagcttgcg agtgattgta agtaataaag cgtaattttt
    19201 tgcaagtacg aaaagtgatt ttttcgatct gtgtcgaaaa aatcactttt ctattttgtg
    19261 tcatccttgc agattattta tgctattcct catattgtaa aaggtataaa aaaggaatat
    19321 tatgtatata gatttgcaat atgctgtgcc gttattgttt gaatacgacc cgaacaaaag
    19381 ccaaattaat ttagccaaat atggtattga ttttgaacag gcaaagttgc tttgggaaga
    19441 tgaacgaaaa gttgtactgg aggcttgcat tgaacccgaa ttacgctatt tcctgattgg
    19501 caagatttat gataaatatt ggacagcgtt ttttacacca agaaatgatg ttattcgttt
    19561 aatttcagtt agacgttccc gtaaaaaaga gatctcatac tatgagaaat accattagtg
    19621 ccgaagaatt agaacgtatc ttcgatgaag gcaaagaaga tattttacaa tactgcgatc
    19681 tttctaccgc tcatcgcccg gggcaaatga aaagggtgaa tgttgatttc ccaaattgga
    19741 tggtagaagc gttagataag caagccagac atttaggtgt gcctcgccaa gccttgatta
    19801 aaatgtggat tgcggaaaaa ttaccggttc aatcacctag gtaagcgagt ggcaaatggc
    19861 attaattgaa tataaccctc cattagaacc atttttagat gaggtttatc gggataacca
    19921 tattttagta attaataagc ctagtggttt attatcggtg ccgggcaatc gtcccgaata
    19981 ttacgacagt gcaatgactc gagtacagca aaaatatggc tttaccgaac cggctcatcg
    20041 tttggatatg gcaacaagcg gtattctttt gttcgcccta agcaaagcgg cggaaaaaga
    20101 actaaaacgc caatttcggg aacgtgaacc gaaaaaacac tatattgcgt tactttgggg
    20161 caaattaggt gaaaaagttg gggataaggg cgaaatgaat tttccgctga tttgcgattg
    20221 ggaaaatcgc ccccgccaga aaatttgcta tgaacgaggc aaaaaagcca ttacccatta
    20281 tgaagtgtta gctcattatc cgaataatat agcgagagta aaactcacgc ctatcacggg
    20341 gcgttcgcat cagctacgag tacatagcct tgcgttaggt cacccgatta ttggcgataa
    20401 gttttatgct aatccgctgg caaaaagttt atcgccccgt ttatgtttgc acgcggagtc
    20461 actaacaatt actcacccga ttacaaggga gttgatgacg tttactgctg agccgacttt
    20521 ttagcctcgt tcagtaggtg tttgtaatat gcccaatcaa aatattgccc cgggtcgatt
    20581 ttccgttccg gggcaatatg gcaatgcccg gtgatgcgtt catcggtaat ttgtggatag
    20641 ctttgctgaa tggctttggt caaatttgcc aaagattggt attgagcttg agtaaacggc
    20701 tgattattac tgccttccag ttcaatgcca atcgaatatt cattgcattt ctcccgccct
    20761 tcaaaacaag agacgccggc gtgccacgcc atatcgttaa aattcacata ttgcgtgatt
    20821 tccccctccc tattaatcaa acaatgggcg gaaacccgta gatctttgat ttcttcaaaa
    20881 taagggtgag cggttggttc gagtttacct tggaaaaaca gatcgataaa atttccacca
    20941 aattcttccg gcggtaagct gatgtagtga ataaccaaca aggaaatatc ctcttgatca
    21001 ggacgttggc taaaatgcgg agacggcact tgtttttgac cggttaaaca gccctgttcg
    21061 atttttaaat ttggcatagt ctaaataggg tgaatacgtt aaaatatggc tcattttact
    21121 agaaaaagag aagaatatgt taagttatcg ccacagtttc cacgcaggca accacgctga
    21181 tgtgctaaaa cacattgtcc agcttttgat cttgcgagca ttaaaagaaa aagaaaaagg
    21241 ttttttatat cttgatactc actccggtgt ggggcgttat agtctgttaa gttttgaatc
    21301 ggaaaaaaca ggcgaatatt tagagggcgt tgcccgttta tgggagcgtg atgatttacc
    21361 ggaagaagtg gcattctata ttgatgagct gaaaaaatta aaccgtggcg gcaagttaaa
    21421 gtattacgca ggctccccat tattggcggt acagcaactg cgtgagcaag accgagccat
    21481 tcttaccgaa cttcacccca atgattttcc gctgttacga caagaatttg ccaaagcgaa
    21541 aaatgtgcaa accaagcgag aaaatggctt tcaacaatta aaatccgccc tgccgcctaa
    21601 agagcgtcga ggttttgtgt tgattgatcc accttatgaa ttaaaagaag attatgaatt
    21661 ggtggttaaa gcgatagaag agggctacaa acggtttgcc actggtgtgt atgccatttg
    21721 gtatccggtg gtgcttcgcc aacataccaa acgtatagtg cgaggtttaa tggataccgg
    21781 cattcgcaaa attctacaaa ttgagcttgc cgttcgtcct gatagcgacc aacgtggaat
    21841 gacggcaagt ggtatgattg tgatcaaccc accgtggcag cttgaaaccc agatgaaaaa
    21901 aatcctgcca tatttaaccg aggtgcttgt gccggaagga acaggttctt ggaaggtgga
    21961 gtggattacg cctgagtaaa ttaaatacgg atagcacaag cgtggacgct tgcgccatca
    22021 taaattctga tttgcaatat tttttagaaa aataaccgct tgtcttatca agaagtgggg
    22081 gaaatataaa aggaaaaaac gatgcaacaa tacaaacacg actttattga atttgcctta
    22141 agccgcaatg tgctgaaatt tggcgaattt accttaaaat caggcagaat cagcccctat
    22201 tttttcaatg ctgggctttt taacaccggg cgcgatttag ccaaattagg cgaatattac
    22261 gccaaagcca ttcaagccag cggcattgag tatgatgtgt tattcgggcc ggcttataaa
    22321 ggcattccga ttgcaaccac ggttgccgtg gcactagcca acctgttcga tgtggataaa
    22381 ccttgttgct ttaaccgcaa agaggcaaaa gatcacggtg aaggcggtaa tttaatcggt
    22441 tctcccttaa cgggcaagat tttgctggtg gacgatgtga ttaccgcagg cacggcaatt
    22501 cgtgagtcga tggaaattat caatgccaat aatgcccagc ttgccggtgt gctgattgcg
    22561 ttaaaccgta aagagaaagg caagggcgag ttgtctgcga ttcaagaagt cgaacgtgat
    22621 tacggttgcc aagttttctc gattgtggat tttgatgatt tggtagcatt tattgaaacg
    22681 tcgccacaat acgctcctta tttgccgaaa atgcgtgaat atcgtgaaaa atacggtgtt
    22741 taacttttgc aaaaaaacag caaaaactca ccgcttgtca ctctctaatc tcaccattat
    22801 gaatcacttt catcttttgg tgagattttt tcaattaaaa agccgataaa ttgattgtga
    22861 gctttagcta attggcttag gataaactcc tgtaatacag gagttggaga actaaaatgg
    22921 cacatcaaaa attacctttt cacgcagaca ccgttggctc atatttgcgt tccgatgctt
    22981 ggaaaaaagc tcacgcagac tataaagcag gcaacatttc cctcgaacaa cgtgatgaaa
    23041 ttgtagaagc ggaagtgaaa aaattagtac aagcatcaat tagatgcggg cattcaagtt
    23101 gttacagacg gcgaatatca ccgctcttgg tggcatattg atttcttgga aaatctgaac
    23161 ggcattgaag gctatgtgcc ggaaaaagcc tatgcgttta aaggggttga ggttcgccct
    23221 tataatacac gttgttgcgg taaagtgtct tggaatccga atcacccttt tattgagcat
    23281 ttcaaaaaat tcaatgcgat tgtaggtggt cgtgcggtgg cgaaatttac cattccaagt
    23341 ccaaaccaat taatgtaccc gattcagtgg gatcacggca tttacccaaa ccgtgaggaa
    23401 tttgccaaag atgtgcaaca ggcttataaa gaggcgatta aagcgttcta tgatgccggc
    23461 tgtcgttatt tgcaaattga tgatgtctat tgggggtcgt tgtgtaataa cgttggtcaa
    23521 ccgacatttg aagccgataa agctcaagcg gtggcgaata ttcaagccat tcttgccgat
    23581 aagccggaag atttaaccat taccacccac gtttgccgag gcaactataa atcttcttat
    23641 ttattgacag gggcttatga tccgattgcc gacggcttat ttgctcaaac caactatgat
    23701 gggtatttct tagaatatga tgacgagcgt tcaggcggtt ttgagccgtt aaaacatttt
    23761 gccaacaaca aagggcgtgt ggtattgggc ttaattagtt caaaattccc tgaattggaa
    23821 gataaggaag cggttaaagc ccgtattcaa gaagcggcaa aatatgtgcc gttagagcag
    23881 ctttgcctaa gcccgcaatg tggttttgcc tcaaccgaag agggcaatat tatgtcggaa
    23941 gcacagcaat gggcgaaagt tcgtcttgtg gaggaaatcg cccaagaagt ttggggcgaa
    24001 gattaattag agtgaaaaat gcccgtaaca agcgggcatt ttttgtgaat tttttgcaaa
    24061 ttcaagccat ttagcgaatg cggttaaaac cttgttctaa atcggcaatc aaatcttcca
    24121 ccgcttccaa gccaacgtga atgcgaatta atgttcccgt cagtttgcgt tcaatcgccg
    24181 ggcggatttt ggcaatttct tccggctgat tggcaagaat cagcgattca aacccacccc
    24241 aagaatacgc cattgaaaac agttcaaaat gctctaggaa gttggctaat ttgtcattcg
    24301 agagcttttc gcaaagttca aatgaaaata gaccgcttga acctaaaaaa tcccgcttaa
    24361 aaaattcgtg ccccgggcag ctttccaacg ccgggtgata aactgctttc acttcagggc
    24421 gttgagccag ccagttagct accgcaatgc tactttgttc gtgctgtttt aagcgaatgc
    24481 ctaaggtgcg tagcccccga gcggtgatgt aagcggaatc agcatccacc atttgcccca
    24541 ttaaataaga gccttcacgc agtttatccc aacaacgggc gttagaaacc gcagtaccga
    24601 tcatcacatc agaatgcccg actaaatatt tagtgccggc ttgaatggaa atatcaatgc
    24661 catattctaa agcagggaac agcacaccgg cagaccaagt gttgtcgatc ataatcacga
    24721 tttctgggtt gatttcacga gcaacacgca cgagagtcgg aatatcaggc acttccattg
    24781 ttagcgagct cggcgattct aaaaaaagca ctttggtgtt cggttgcaca agggctttca
    24841 agccttcacc aatcatcggg tcataataag tagttgaaac acccatacgt tttaacagcg
    24901 cattacagaa ttcttgtgtc ggttcgtaag ctgcgcctgt cattaaaacg tggttgcctt
    24961 gttccacaaa agctaaaatc gcattggtga ctgccgccgc accgcaaggg taaaggtagc
    25021 aacctgctcc accttctaat tcacacatcg cttcttgtaa tgaaaaatga gtgagagtgc
    25081 cacgtctgcc ataaaataat gctcctttgt agcggttttg tgtagcgtgt tttttctctt
    25141 ctaaggtttc aaacactaaa gatgaagcac gctgaatcac cgggttaact gctccttgtg
    25201 tgttacgttt tttacgccct gtatgaacaa gtttggtgga aagattttta tagttagaca
    25261 taacttttcc taaagtaaaa tgcatagggg caaatcaaca tttgcccctt tattaataat
    25321 taacgaaaca taaagttatt tctttgacgg ctacgtttaa attggctgat tagcacaatg
    25381 accgcaacaa ttaagtaaac cgcaaaagta aagattagcc attgtgccat tgaaaagccg
    25441 aacatttccc attggctttg gctacaatta accggaccgg gggcaaacac ttgtggtagc
    25501 cattggtcaa gcggcaaggt ttgcgggaaa ttaactttaa attcgcattg attccatggt
    25561 gatggattga cctgataatc gtggtgtttg attgaaagta ctagcccttt aaatgcgcta
    25621 ccaagccaaa ttagaattgc caagtagcga ataatcgcat atctattacc aagaaatcct
    25681 aaaataccgg caaataaaat accaaataaa gcaactcgct cataaataca cattacacaa
    25741 ggtactaatc ccatcccatg ttggaaataa agcgctgtgc cttcaagtat aagacagctt
    25801 aacattagta aaaaccatgc actgcgagat tgtgatagat ttttaaaaaa atagagcata
    25861 gttattcctc attttgtgaa cttaaggcat tctaccttat ttggtatgag ttatctataa
    25921 actaacgtgt aataaaccat ccccaattta tcattacttc agtcatagaa ggtagtaaga
    25981 attctaaccc taagaaaccg acaatagata gaacaatggt ataaggtaat gccatataga
    26041 ccattctgcc gtaagacagt ttaattaacg gcgcaaagga ggacgttaat aagaataaga
    26101 aagcagcttg tccgtttggg gtagcaacag aaggaagatt tgtgccagta ttaattgcaa
    26161 ctgcaatcag gtcgaactgc tcacgatcta taatgccggc atctagtgcg gttttagctt
    26221 cattaatgta aacagtaccg acgaagacgt tatctgaaat catcgagagc aaaccattga
    26281 aaatatagaa taatgaaagc tgtgaatgtg gttcggcaga taacacaaag gcaatgatcg
    26341 gctcaaataa ttttaaatca ataatcacgg caacaaccga gaaaaacaca ataagcaatg
    26401 cagtaaaagg catagattct tggaatgctt tccctaaagt gtgttcatca gtaatgccac
    26461 aaaatgcagt gcaaataatg atgatggtta agccaataat ccctacatcg gcaagatgta
    26521 gcgctaagcc aataattaac caaattccag caatggcttg caccagcatc tttaagcgat
    26581 cttgtttcgt cattttttgt tcttttagtt ggctatagcg agcgagtacg ccccaaactt
    26641 tgctaggaag ccggtctcca taaccaaata atttatattt ttctacaaga aagcaggtcg
    26701 caatcccaca aattaacacg ggtaagctaa ctggtaatgc tctaagtaag aattcgataa
    26761 atccccattc cgcttgggag gcaataatta agttttgtgg ttctcccacc atggtcatta
    26821 cgccacctaa agctgagcca ataccggcgt gcatcaataa acttcttaaa aaaccacgaa
    26881 attgctctaa aatttcttta ttagagatga ttttttcatc attggtaata tcagtagaat
    26941 cttcaaagtt attacctgat gcgactttat gatatacgcc gtagaaacct gttccaacgc
    27001 taatgattac agcaataacc gttaaagcat caagaaaggc ggataaaaaa gcagcgctta
    27061 agcagaaaga aagggaaaga atttttttcg aatgaatggc gacaagcagt ttggtgaaaa
    27121 tataaagcaa taattgcttc ataaagtaaa taccggcaac cataaacatt aaaagaagaa
    27181 taacatcaaa gtttgccata atttcttctt taatgtggtg aggatttgtc ataccgatta
    27241 caactgcttc aatcgctaat aaaccacctg gctgtaatgg ataacatttt aatgccatag
    27301 agagagtaaa aataaattca gcgactagaa accagcctgc aacaaaagga ttgataaaga
    27361 aataaatgag aggattgata attaaaaatg ccaaaatgca caatttatac cactcggggc
    27421 tttttcctaa gaaacttttg aacagagcat caatgctact catataaagg acctcaaaat
    27481 ttgtaaacag atattacaat tgtaatatag tttagattaa aggataatag tattactgaa
    27541 ctttttagtc gcaataattg attagaaata aagaatagtt agattttaga taagcatatt
    27601 ttttgcttgg ggggcattaa tgggtcacag tgatatttta aaagcgcaaa gcccggcagc
    27661 gttagcggaa gaatatattg taaagagtat ttggaataat catttccctg ccggctctga
    27721 tcttcctgcc gagcgagagt tagcagagcg cattggggta acaagaacaa ctttacgtga
    27781 agtactacaa cgtctagcgc gagaaggttg gttaagtatt cagcacggca agccaacaag
    27841 agtgaatgat atttgggaaa cttcggggcc taatattatt ggcactatta ttaagctaga
    27901 taaaagctat cttccagtgg tgattgccaa tgtggtgtca ttacgtactc gtatggcgga
    27961 ggcttatatt ccagaagcga tttaccttgc tcctgaagaa agtgctaaac tctttgatgg
    28021 actagatgaa ttagaaaata cagcagctgc ttatgctgaa tttgattata agttattcag
    28081 acaatttact tttttagcca ataagcctgt gtatgcgttg atcctaaata gctttaaatc
    28141 aatgtatcat caagtcgcaa aaattttctt tgctgatgaa aataatcgtc aattaacgtt
    28201 aagcttttac cgttcattat tatgtacttg tcttgcaaaa gatagtgaaa aagcagccgc
    28261 ttgtatggct aaaaatcgcc aatctagtgg tgaaatttgg caaaaattat ccgctaatat
    28321 tcctgaaagc tttggtcagc tttaacagaa ggtagaattt tgaacgaaat tatttttagc
    28381 ttagaaccgc aagataatgc tcgtctgcaa tcgctttgtg gtgcatttga tgagcattta
    28441 gccttaattg aaaaaagttt taatctcatt attgctcgaa caggcttcaa ctttacgatt
    28501 caatcggaag atgacaatca ctattctgct accttggttc aaaatagtgt gaagctgatt
    28561 aagcaactgt ataatgaaac tgccccgatt aaaggcaaaa ttaaggaatt ggacttagaa
    28621 gatatacatt tggcgattca ggaaagccga atgctactac aaaaccaatg gcaagccggc
    28681 tcgcaaggcg aaatagcgat taaaaccaag cgaggggtga ttaaacctcg tagcgaacat
    28741 caacaagcct atttacgaaa tatattaagc cacgacatca gttttggtat cgggcctgct
    28801 ggcacaggca aaaccttttt agcggtagcg gcagcggtgg aatcgcttga acgccaagaa
    28861 atccgccgta ttttacttac ccgtccggcg gtggaagccg gtgaaaagct cggtttttta
    28921 cccggcgatt tagggcaaaa aattgagcct tacttacgcc cgttatatga tgccctgttt
    28981 gaaatgcttg gctttgaaaa agctcaaaag ttgatggaac gtggtgtgat tgaaattgcc
    29041 ccacttgctt atatgcgagg gcgtacttta aacgatgcgt tcatcatttt agatgaaagc
    29101 caaaacacga ctaccgagca aatgaaaatg ttcttaaccc gtattggctt taattccaaa
    29161 gcggtgatta ccggcgatat tacccaagtg gatttgcccc gtagccaaaa atcaggctta
    29221 aaacacgcaa tggaagtgct aaaagaagtg ccggaactca gctttaattt ctttgacagc
    29281 aaagatattg tccgccaccc tgtggttgcc aaaattgtgc aagcctatga tgcgtgggaa
    29341 gcggttgatg aagagcgtaa agaacagcga aaactggaaa aattagcttt agagcaagaa
    29401 aaaattcttg ctcaagctga aatgttatag cttacaagcg gtcatatttc gctaattttt
    29461 tgcaaaaaat cgctgaaatt tcaccgctta tcataacagt tgttcaacaa aaaagcggga
    29521 agttaattcc cgcttttctt tatcttattg tttcattata agatttcttt tgctttagca
    29581 accacgtttt caacggtaaa gccgaagagt ttgaataatt gatctgctgg tgcggattca
    29641 ccaaagctat tcatacctac aattcgacca tcaaagccga catatttata ccagaagtca
    29701 gctaattgag cttcaatcgc cacacgttta gtgactgaac gtggtaatac cgattcacga
    29761 taggcttcat cttgtttgtc aaacacgttg gtgcttggca ttgaaactac acgcactttc
    29821 acgccttctg catctaacac atcagcggct ttcattgcta aatctacttc agaaccggtt
    29881 gcaattaaga ttaaatccgg gcaactgcct ttttcgcaac attcacgcaa gatatagcca
    29941 ccacgagaga tgttcgctaa ttgctccgca gtacgttgtt gttgagccag attttggcgg
    30001 gtaaagatta gtgctgtcgg gccgtcttta cgttctaccg ccgctttcca agcaacagca
    30061 gattctactt ggtctgccgg acgccaggtt tctaagtttg gaatttggcg taatgaagca
    30121 gtttgttcta ccggttggtg ggtcgggccg tcttcaccta aaccgatgga gtcgtgtgta
    30181 taaacaaata aggcacgttg cttcattaag gctgccatac gcaccgcatt gtgtgcatat
    30241 tcgtagaaca ttaagaaggt tgcaccgtaa ggaatgaaac caccgtgtag ggcaatcccg
    30301 ttcataatcg cagacatacc gaattcacgc acgccgtagt tgatgtagtt accatctaca
    30361 ttgtgttccg cacgaatcgg ttttgagcca gaccataagg ttaagttaga gcttgctaag
    30421 tcagctgagc cgccgaggaa ttcaggtaag attggcgcgt aagcttcgat tgcattttgt
    30481 gatgctttac ggcttgcaat ggttgccgga tttgcttgta atttttcaat aaaagctttg
    30541 ctttcagctt cccagttagc cggtaattcg cctgcgtaac ggcgtttaaa ttcagcggct
    30601 agttcagggt atgccgcttc ataagcagca aatttagcgt tccaatcttt ttctgctaat
    30661 gtaccttttg cttttgcatc ccactctgta taaatttcag ctggaatcac aaatggggca
    30721 tgttcccaac ctaaaaattc acgagcggct tggatttcag catcacccaa tggcgcaccg
    30781 tggcaatcgt gagagtttga tttatttggt gaaccatagc cgataatggt tttacaaata
    30841 attaaagttg gacgctcggt ttcggcttgt gcattttcaa tcgcaaattt gatttgttct
    30901 gggttatggc catcgacatt acggataact tgccagccat aagactcaaa gcgttgtgcg
    30961 gtatcatcag tgaaccaacc atcaacgtgg ccgtcgatag agatattgtt atcatcgtag
    31021 aaagcaatca gtttgcctaa gcctaatgta ccggcgagag agcaagcttc gtgtgagata
    31081 ccttccatta aacagccatc gcctaagaaa gcgtaagtgt agtgatcgac aattttatga
    31141 ccttcacggt taaattgtgc tgcaagggtt ttttccgcaa tcgctatacc gaccgcattg
    31201 gtaatacctt gacctaacgg gcctgtggtg gtttcaacac ccggtgcata accatattca
    31261 gggtgaccag gtgttttaga atgtaactga cggaactgtt ttaaatcttc aatagagaga
    31321 tcatagccgg ttaaatgaag taagctatag attaacattg aaccgtgtcc gttagacaga
    31381 acaaaacggt cacgatctgc ccatttagga ttagttggat tgtgttttaa aaaatcacgc
    31441 cataaaactt ctgcaatatc agccataccc attggtgcgc ctgggtggcc tgagttagct
    31501 ttttgtacag catccatact taaaaaacga attgcattcg ctagcacttt acgttctgtc
    31561 atttgtgtta ctcctaatcg agaatgttat ataaaatgga aaggatatcg aattggattc
    31621 tacactattt tgctagaaaa actcaaaaat ggaaatgaga aatgtgatct gtatcacaaa
    31681 aaatgattaa attgtgattt gttttgattg gattttaata gacggttttt tcctaataca
    31741 atattttctt gataaagcga atgtttagta gttgatctag gcaacaaatt tatctaaaat
    31801 acgcactctt tttggcgttg agcatttgct caacattttt attaattaca tatggtacct
    31861 atcagcggta gagattctaa caagataggc ggcgatatgg cttcttatga ggttccccaa
    31921 tgaaacaagg tattcaccca gaatataaag aaattacggc aacttgctct tgcggtaatg
    31981 tagttaaaac tcgctcaaca gtgggtaaag atttaaactt agacgtatgt ggcaactgcc
    32041 acccgttcta tactggtaaa caacgtgttg ttgacaccgg tggtcgtgtt gaacgcttta
    32101 acaaacgttt cagcatccca agctcaaaat aatttgatta ttgcaaaccc cgctaatgcg
    32161 gggttttgtt tttcttatat atcgaattaa caagcggtgt atttttctat caattttgca
    32221 aattggtgat ttaaccattt tgcaggagct accagagaaa aacctcgagt atcattatta
    32281 tcctcggtcc atttatctgc gatcaccata aaagtttcaa catctttctt aggttttgga
    32341 taccagcgtg caatattagc tggatgattg gcataaaatg agagcaattt cttgcctaat
    32401 gcacaagaaa tatggacacc acctccatca actgcaatta caatatcagc agagtttact
    32461 aatgcacaat aacctaaaat atcactatta ggtgctaggc ttatttcaaa tggggcttta
    32521 attttcgaca aatattcggc actattggtt gtattggtca gcaaacaact aatatgttga
    32581 acatatcttt tatcaatcat agataatagc tctgataatt cttgagtaga aatttcacgc
    32641 atactacctt gaggattcaa tagtaatcga attttcttct cttgccatag cgtatttgca
    32701 aaactgctta gttcattagg aatgtttaaa ttataattga cctgattttt ttctaaaaaa
    32761 tcagcaaaaa tagcatagtt gagatagtca gcaaaatgaa cctgctttgg aaagacagtg
    32821 gtgaaatcgt aattttttac tgtatctaaa ttgtaaatac ttttttgttt tttaccgaag
    32881 ttaataataa atttaggctt taaaatacta tctaaaataa tactttttgt ggtaaatgtc
    32941 ggtttgaaat ctaaataaag atcccaatgt ccccgctgcg agagataagt ggatacttta
    33001 tcttctaaga tcatatctac cacgtttgct tgagagaaaa tcaatttgtt acgagatgta
    33061 actaaaaccg ctatttttac atttgggaga gcttttttaa tttgctccaa atgagctata
    33121 tgcacaacag catcgccaat agcatctccg ataggtttga gtaatacgga ttctattttg
    33181 ctaaatttga aggttttttt ctcttttttt gtaccaaaaa gttttataac taaggatttc
    33241 atctctataa taggttgatt cttttaatga ttggttatag taagtaaaaa tgaatattaa
    33301 agcaacgtta agaaaagcaa gattggtgat aggtaaagcc attttagata gtaaaaatac
    33361 tgatctgata ttatcggaaa ttcccaataa aattctattt cttcgtcacg atggtaaaat
    33421 tggtgattat gtcgttagtt cctttgtctt ccgtgaaata aaaaaacagt ctccccaaac
    33481 gcaaataggc gtggtttgct cacagaaaaa ccgatattta tttgagaata atccttatat
    33541 tgataagctc tatttggtta agacaaaaag tattcctgat tatattcgtg gtggcaaaca
    33601 acttgcaaaa gagcagtatg atgttgtaat cgatccgact gttactttac ggaatcgtga
    33661 tctcttattt ttacgcacta tatcagccaa acattatgta ggttatcaga aacaaaaata
    33721 tcgattattt gatctaaatg tagaggatag aaaacagcat ttttcagaga tttatcaaga
    33781 tgcgttagct ttaatcgggt ttgaaaatat agaaactcag tatgatgtgc cactaaatgc
    33841 cacaagcaac caatccataa agcattattt atatgaaaac caaattagaa attatattgc
    33901 gttaaatctt tttggtgcag gttcggcaag acgttttagt gagcagaaaa ttaatgaact
    33961 gctgagttgc ttaaaacagc atagtgataa accgatagtc ttacttactt ttcctgaagt
    34021 aacggcaaaa ttgtgttcct ttactaagaa gtataaaaat atatttgtct atgagaaaac
    34081 caaaagcgtt tttgattcaa tagaactgat tcgttttgcg gacttattaa tttcacctga
    34141 tactgcaacc gtgcatattg cctcaggctt gagtaaaaag ataattgctt tttacagtag
    34201 cgatgaacag aattttatac attggcatcc gaataatcag gctgaaaccc atattctccg
    34261 ttttagaaaa agcgtgaatg atttagattt tgctgcaata aaaccggagt ggctaaaata
    34321 atatggactt ccaaagcctt aaacttttcc tagatatagc ccaaagccgt agttttattc
    34381 gcagtgcgga gaagaattat atgacggctt ccacacttac ccgccatatt cagcgtatag
    34441 aggaggagct cgggcagccg ttgtttctgc gtgataatcg acaagtgcgt ttaactgaag
    34501 caggggaaag gtttttggcg tttgctcaac aaggttgggc agagtggcag cagttgcaaa
    34561 accagttgtc gcctgctcaa ggtgatttag aaggagagtt gaaagtgttc tgctcggtaa
    34621 cggcttctta cagccattta ccgccgattt tgggaaagtt tcgccaaaaa tatccgaaag
    34681 tggatattaa actgagtacc ggtgatccgg ctttggcatt ggaacaggtt cagtcattgg
    34741 ctgcagatat ttcggttgcg ggtaagccgg aatttctgcc gaataatatt gtgtttcact
    34801 atattgatga tattcaactt tcgattattg cccctcgtgt ggcgagccaa gccactcaat
    34861 ttctgcaaca gtcgccgata gattggaaaa atatcccctt tattttgccg gtgaacggac
    34921 ctgtacgaaa acggattgac cgttggttta aagagcaaaa aatcaaagac ccgattattt
    34981 atgctaccgt ctccggacac gaagcgattg tgccgatggt tgcactaggc tttggggtcg
    35041 cactgctacc ggatattgtg attaagcata gcccaatgaa taatcaagtt tcttatgtga
    35101 atttaccctc gccgatcact ccgtttgagc tgggaatttg cgttcagcaa aaacgcttgc
    35161 aagagccgat catcaacgca ttttggcaat tattgtctga taattcagca taacaagcgg
    35221 ttagattttg ctaaattttt gcaaaaaata gagcaaaacc gaccgcttgt agataaaact
    35281 ttcagataaa aaataaggtg cgtgattgtg atctgcgcac cttatgttgt tttagattat
    35341 tgcactttat tgcactgtgg ctttagctcg cgattttttc accttgatct cggcttttga
    35401 caagatttca atccccattg gcgggttttc tagtgccaga gctagtacct cgtcaatggt
    35461 ttctactgcg tgaatgtcca acgctgcttt tgcattttcc ggaatttcct ctaagtcttt
    35521 ttcattttct ttcggaataa tcaccgtcgt aataccacca cgatgggctg ccagtaattt
    35581 ctcttttaag ccgccgattg gcaatacttt gccacgcaag ctgatttcac cggtcatcgc
    35641 tacttcttta cgcacagggt tacctgttag gctggaaatt aatgcagtac acattgcaat
    35701 ccctgcactc ggaccatctt tcggtgttgc accgtccggc acgtgaacgt gaatatcccg
    35761 tttttcgtgg aagtcttcag caatgcctaa tttttctgca cgagagcgta caaccaccat
    35821 tgccgcttga atagactctt tcattacatc gcctaatgaa ccggtgtaag agaatttgcc
    35881 tttacctgca acagaagcgg tttcaatggt taataaatca ccgccaactt ctgtccacgc
    35941 taaaccggtc acttcgccaa tgcggttttg gctatccatt ttgccgtagt caaaacgttt
    36001 tacgcctaag tattcttcga tatttttctc agaaactgta atggatttta atttcttatc
    36061 caatactaaa gctttcacgg ctttacggca gattttcgca atttcacgct caaggctacg
    36121 cacgcctgct tcacgggtgt agtagcggat aatacttaaa attgcactgt cttcaatggt
    36181 cagctcaccc tcttttagtc cgttattttc ttgctgttta gccagtaaat gaccacgagc
    36241 aatgtgcatt ttctcatctt cggtatagcc tgaaagacga atcacttcca tacggtcgag
    36301 caatgctggc ggaatgttca ttgagtttga ggttgccaca aacattacat cggataaatc
    36361 gtaatccacc tctaaataat ggtcgttaaa ggctttattt tgctcaggat ctaacacttc
    36421 aagcagagca gaagccgggt cgccacgcat atcttgagcc attttgtcga tttcatctaa
    36481 caagaacagc ggattacgca cgccgacttt cgccattttc atcattaggc tacccggcat
    36541 tgagccgatg taagtacggc gatgcccacg gatttccgct tcatcacgca cgccacctaa
    36601 cgccatacgc acatatttac gccctgtggc attggcaata gattgcccta atgaggtttt
    36661 accaaccccc ggcggaccaa ctaagcacaa aatcggacct tttaatttat ttagacgact
    36721 ttgcactgct aagtattcta caatccgctc tttcactcgt tctaagccgt agtggtcttt
    36781 atccaaaatc tcttgagctt gggctaaatc ttttttgacc gctgattttt tatgccacgg
    36841 catttgtaaa atccagtcaa tataaccacg cacaacggta gcttcggaag agctttgcgg
    36901 cattgctttg agctttttga actccgtatt cagcttgtct tttacctcgg tcggtaattt
    36961 tgcagcgtca attttctctt taagcttatc taactcgctt tgttcaacgt catcgccatt
    37021 acctaactct ttttgaatcg ctttaatttg ctcgttgagg tagtaatcac gttggttttt
    37081 ttccatttgc tgtttaacac gattacgaat ccgagtttcg gtttcaagcg tatccatctc
    37141 agttgccatc gcaattaaca aggcttcaaa acgggcaatc agatttggtt gctccaataa
    37201 ttcctgtttt ttcttcaccg gagcaattaa gttagaggca atggtatccg ccaagcggtc
    37261 ttccaacgtg attttttgca gtttagcaat aatttccgcc ggaattttct tgttattttt
    37321 aacgtaattt tcaaattcgg ttaaagtggt tttagcaatc gcttttaact cttcgttttc
    37381 gtcatcatat tccgaatata ttggctgaat tgccgcccag aagccgtttt catcatcgtg
    37441 aatttgctcg attttggcac gggtttgtcc ttctaccagc actttaactg tgccgtccgg
    37501 caggtttaac atttgaataa tgttggcaat tacacctacg ccatacatat cttctgcatt
    37561 cggctcttct ttatttggat cttgctgagt gactaaaaac agttgtttat tggaatccat
    37621 cgccgagcgt agggcttgaa ttgatttttc acgtcctaca aataacggca taaccatata
    37681 aggaaaaacc accacatcac gcaatgggag tagtggtaat tcaatcgctt tcttttttct
    37741 tggtgccata aatttgctct ctctatcaaa atataatccc ccattatgag ggcgaatttg
    37801 ggaaaaacaa gggaaaattt gatttatctt aaaaaaactc gaatagtcaa aacagtagat
    37861 gttggcgatt taatcaattg ttaaaatcag ggtaattagc ttaatttccc gcttgacatc
    37921 aaatcgtaat gcgagcaaaa tcccctgcat attttaatct tcagggcagg gtgaaattcc
    37981 cgatcggcgg taaagtccgc gagccgagca atcggcagga tttggtgaaa ttccaaaacc
    38041 gacagtatag tctggatgaa agaagagtca aaaaccgcaa aaaataccgc acaagcggtc
    38101 attttttgtg tcttttttgc aagccttgag tcgtgagatt tcaaggcttc attgttttgc
    38161 aggcggcgtt tgcaaatttt ttactaaaaa cgaccgcttg tattgcaata atcctttcat
    38221 tacgccctca atttatcaaa atgtatatga cagatgttca atatatggct tatgccatca
    38281 cccttgccga aaaagcacgg ggttggacaa gccctaatcc gctagttggc tgtgtgatcg
    38341 tgaaaaacgg caacattatc gccgaagggt atcaccaaaa agccggtagt tggcacgctg
    38401 aacgcaatgc gattttaaac tgcgaggaag atctgacggg ggcaaccgct tatgtaacct
    38461 tagagccttg ttgccaccac gggcgaaccc cgccttgttc cgaactgctg attgaacgtg
    38521 ggatcaaaaa agtgtttatc ggctctcgag atccgaaccc acttgtttct ggcaaaggag
    38581 cggcacagct tagagccgcc ggcattgagg ttgtggaaga ctttatgcga acggagtgcg
    38641 atgcgctgaa cccgattttc ttccattaca ttcaaaccaa acgcccttat gtgttgctga
    38701 aatatgggat gacggcagat ggtaaaattg cgacttatac ggggaattcg aaatggatca
    38761 ccggcgaggc tgcccgagct aatgtacaga aaagccgcca cgaatatagt gcgattatgg
    38821 tcggggtgga aacggtgctt gccgatgacc caatgctcaa cagccgaatg gaaaatgcta
    38881 aacagccggt gcggattgta tgtgacagcc aactgcgtac cccattggat agccaactag
    38941 tccaaactgc acgccaatat cgcaccatta ttgctacgct caataatgat gcaaaaaagc
    39001 aggcagaata taccgcttgc ggtgttgaaa ttttagtgac aggcgaacgt gacaagcggg
    39061 tggatttagc cgatcttttg caaaagctgg gcgaactcgg gatcgacagc ttattgattg
    39121 aaggtggttc gcaactcaat ttcagcgtgc tggaacaggg gttagtcaat cgagtacatt
    39181 gctatattgc cccgaaactg attggcggca aagcggcaaa aaccccgatt ggtggcaagg
    39241 ggattggcga gttagcacaa gcggttaaat tacgtctaaa atccaccgaa ttgctcggag
    39301 aagatatttt gttggattat gaagtggact tgcttcgtaa ttaaattgaa atttccttac
    39361 tctcgcccgt ttacgggaga gagacagcat aaaatttcgt tcagaaattt tatgcagaga
    39421 gaggggaaaa tgagtgtaat cttccctctc cctccgaaaa tcctacggat tttctcttcc
    39481 ctctcccgta aacgggagag gggaatagta agataagcag ttctcagact aaattggaag
    39541 taaatcggag aaaaatttaa atgttcacag gcattatcga agaagttggc cagatagccc
    39601 aaattaagaa acaaggcgag tttgtggtgg taacggttaa agcaaaaaag attctgaccg
    39661 atgtacattt aggggatagc attgcggtaa atggcgtgtg tttaaccgtg acttcattta
    39721 cgcaggagca atttactgct gatgttatgt cagaaacctt aaaacgtaca tcacttggcg
    39781 aattaagtat caacagctcg gttaatcttg agcgggcaat ggcggcaaac gggcgttttg
    39841 gtgggcatat tgtgtcaggt catattgatg gcacgggtgt ggttgcagag attacaccag
    39901 cagataattc aacttggtat cgcattaaag ccgaacctaa gttaatgcgt tacatcattg
    39961 aaaaaggctc aattactatt gatggcatta gtttaacggt ggtggatgtt gatgcggaat
    40021 ctttccgggt atcgattatt ccgcatacca ttaaggaaac cgacctcggt acgaaaaaaa
    40081 tcggtagttt ggtgaattta gaaaatgaca ttgtcggcaa atatatcgaa cagtttttat
    40141 tgaaaaaaga gcctgaaaat ccgcaaagta aaattactgc ggactttctt aaaaatgcag
    40201 ggttttaacc aaataaagga caaataatgt ttaagttttc aacggtagaa gaagcaattc
    40261 aagcaattgc acaagggaaa attattttag tcagcgatga tgccgaccgt gaaaatgaag
    40321 gggacttcat ttgtgcagcg gaatttgcga caccggaaaa tatcaacttt atggcgaaat
    40381 atggtaaagg gttgatttgt acgccgattt cgacagaaat tgccaaaaaa ttaaattttc
    40441 acccgatggt gctagagaac gaagataatc atcaaaccgc atttaccgtt tctgttgacc
    40501 atattcaaac cggcaccggt atttccgctt ttgagcgttc attaacttgc ctgaaaatgc
    40561 ttgatgaaaa tgctaagccg gaagatttta gacgtccggg gcatgttttc ccattagtgg
    40621 caaaagacgg aggcgtatta gtgcgtaacg gtcataccga agcaactgtg gatttagctc
    40681 gtttggcggg cttgaaaccg gcagggcttt gctgtgaaat tatggcagaa gacggcacga
    40741 tgatgcagat gccggaatta caggcatttg cacaagcaca caatatgccg tttattacta
    40801 ttcagcagtt acaagagtat cgtagaaaac acgacagctt ggtgaatgtg gtttcggtgg
    40861 taaaaatgcc gaccaaatac ggtgagttca aagcacacag tttcgttgaa actatttcag
    40921 gcaaagaaca cgtcgcttta gttaaaggtg atattggtga tggcgaaaat gtattatgcc
    40981 gtatccattc cgaatgttta accggcgatg cctttggctc acaacgttgc gattgtggtc
    41041 agcagttcgc agcggcaatg aaccaagtgg agcaagaggg cagaggcgtg gtgctttatt
    41101 tacgccaaga aggacgtggc atcggtttaa ttaataaact gcgtgcttac gaattgcaag
    41161 atagaggaat ggacacggtt gaagccaacc tggcattagg tttcaaagat gatgagcgtg
    41221 aatattatat cgccgctcaa atgtttgaaa aattaggcgt aaaatcgatt cgtttgttaa
    41281 ccaataatcc ggcaaaaatt gaaggactca ttgagcaagg tttaaacgta gtggctcgtg
    41341 agccgattat ggttgagcca aacgaacacg atttggaata ccttaaagtt aaacagcaca
    41401 aaatgcgaca tatgtttaat ttctaatcca atactctctc cccttgtggg agagagacag
    41461 aaaaatactt cgttcagaag tatttttcag agagagggta tattttttag aaaaagtttg
    41521 caatttcccc tctccctgat ttttcttctg aacgaagaaa aatctatccc tctcccacaa
    41581 ggggagaggg ttattgagta tcaaatttat tttaaagaag gaaaacaaac aatggcaaca
    41641 tttcaaggaa actacatcgc aactggttta aaattcggta ttgtggcaac taactggcac
    41701 aagattttta tcgatcaact gttaaacggt gcaaccgata aattattgcg tcacggcgta
    41761 gaagaaaaaa atatcgacac cgtatgggtg ccgggtgcat tagaaatctc aattgcagcg
    41821 aaaaaaatgg cacaaagcgg tcgttatgat gcgattatct gcttaggtgc ggtcgtgcgt
    41881 ggagcaacca gccactatga tgtggtagtg aacgagtcag caaaaggcat cagctcttct
    41941 gctttagaaa ccggcgtgcc gattattaac ggtattttaa cggtggaaaa tttagagcaa
    42001 gcgattgagc gttcaggcac taaagccggt aataaaggcg aagagtgtgc aatggtagcg
    42061 attgaaatgg cgaacctatt aaaagcctta gcgtaatcag cgataaaatc cccttagacc
    42121 caagagccta aggggatttt tttattttct gcgtagtaac aggctggcaa tgacacaaaa
    42181 taggctgaaa ctgtaaatta accagtgacc taattgttta aacggcgtat cgcctttggt
    42241 tggcacaatg gtggcagtta gtgcatcagc agtaaattgc ggtagttgtt caattacttt
    42301 tccgttggca tcaacaatgg cggtaatacc ggtattcgca gctcgaagca atggtttgcc
    42361 aagttctaac gctcgcattc ttgccatttg gaaatgttgc caaggcccga tggaagaacc
    42421 aaaccacgca tcattggtga tagttaataa ataatctgaa ttttggcttt tttggttttg
    42481 ttgtaactga tcaccaaaaa taatttcata gcaaatcgcc atattaaatc ggttgttttt
    42541 cgccaagaat gatggttgaa cgaaactgcc ttgtgaaaga ttaattggta gaataaacac
    42601 ttcccgcatc caatccagca ccgagccaaa cggcacatat tcgccaaacg gcacaaggtg
    42661 atgtttgttg tagcgagggt tgctgtgcag ggcatattcc ctctcttttt cgcctaatag
    42721 cacgctactg ttaaacagtt cctcttgctc attttgatag agtgtgccga taataatttc
    42781 acttccgtgt tggcgagcta agtgatcgag cgagccaagc agcgggctga tttgattttc
    42841 aagtgccgga atggcggatt caggcaaaat aatcagttca ctgttaccta ataggggcag
    42901 aatgagctgt tcgtaggttc gtacgctgtg gttgaaatgt tgcggatccc acttcatttt
    42961 ttgctcaata ttcccttgta ctaaactcac tacaagcggt tgtttttctg tatcaatttg
    43021 cacaaattgg agaaagcgag tggcaaaact taagccaaaa atgaccgcta gtaccatcaa
    43081 tgatggcaca gttttgttct cttgctgaat aattttcact agatagctac ttgcaactat
    43141 taccaagaaa gtcaaacctt caacgcccaa aatcggcgca ataccagcaa aggggctgtc
    43201 tattaagcta tagccgaatt gtagccacgg aaaaccggta aataccacgc ctcgtaaata
    43261 ttcggtaaag gtaaaaatcg cagccaatgc aaacggatta ttcagtttga gcctgtgtga
    43321 aactacacta aacagcagat tataaatagc gagatagcac gccaacagga atactgctat
    43381 gtagcttact atggtaggaa caccaccaaa ttgggtcata ctcacagaaa cccagtttac
    43441 accggtgcag aagtagccga tagaccaagc aaaggttgcc cataatgcgg tttttctgtt
    43501 tgccagagtg gctgaccaaa ccaagccggc tgcggaagca aaggcaagaa tccaaatatc
    43561 aaaaggcgaa taggcgaaag tgccgattgc acccagtatg attgcaagga gacaagcggt
    43621 taaaaaaggc ggattttttg caaaattcat aataactcac taaataaatg aggcacgccg
    43681 aaacgtgcct tgattgaaac tcactatatt attcttcttc gttaggagag gttttttcca
    43741 ttttctctaa ctgttcatcg gaaagtgtga ctcgtagctg aatcaattgg cggctattag
    43801 ctgaggtgac tttaaaatca attccgttta actcaatttg ctcatctcgt ttcgggaaat
    43861 aaccgaaagc ctgcatcact aaaccaccaa tggtatccac ctcttcgtca ttaaagtcgg
    43921 tagcaaaaaa ttcattgaat tttttgatgt cggtgagcgg taataccgca taagtatgtc
    43981 ttgaaagctg gcgaattggt ttgacctctt cttcatcaaa ctcatcttca atatcaccca
    44041 caatttgttc aagaatgtct tcaatggtga ctaagcctga aaccgcacca aattcatcaa
    44101 ccactactgc catatggaag cgttctgaac ggaactcttt tagcattcgg tctaggcgtt
    44161 tgctttccgg tacaataacc gcagggcgta atacctgttg cagattaaag ggttcagagt
    44221 cagaacgtaa atatttcaat aaatctttag agtgaagaat accttcgata gtatctttct
    44281 caccccgaat caccggaaaa cgagagtgtg cggattcaat aattaaatca atacagacat
    44341 ctaaaggttc attggcatca ataaacacaa tttgcgcacg gggaatcata atatcccgca
    44401 ctcgtaattc cgagatttcc attactcctt cgatcatctc tttggtgtcg ctgtcgatca
    44461 attcattttc aacagagtct cgaatcactt cgactagatc ttcacggttt ttaggctcgt
    44521 tttgaaaaag cccgctaaat agagagtgta aaatcgattt tttttctgat ttttcggtgg
    44581 tgtttacact ttgctgttca tcactcatag tttgttccac ttaaataaag tacgcttata
    44641 ataagcaaat tcagtcacaa agcaaataaa acattgctat tttcactcaa attagcatag
    44701 gataagcaaa aatcttttta tttcttcata ttttaggagt ttgaaatgaa attaaccaaa
    44761 atagcattaa gtttaacagc cttagttgtc agttcgatga gtgtggccgg gacgttaagt
    44821 acatcatcaa tggtggacat tttagccttt gacgggcaac gtgttaaatc cggcacgact
    44881 tcggttcaaa tgagtgagaa taaaacgcat caagtggtag tggaagtcgg tgggacagtt
    44941 gaaggggatt ttttcacctc tgatcaaatc attttgactt tccaaggcag tgcggaaaat
    45001 gcaaaattag aaacgccaag attaaattca aagttagatc ttcgtaaatt ccaagagaat
    45061 cagactgtgg caattaaaac cgattcaggt aaggttattt cacataaaca agatttctta
    45121 aaaggggaag gtttccttgc gaaaacaaga gttgaagata atttaacgaa atataactta
    45181 gcgaaaaaaa cagcttcagt tgaacagttt gcgacggcac ctcttgaagc aaaaggacaa
    45241 attgtggtgg atacaaataa agtttcacaa gaagaattac agcttttatt tagaaaggca
    45301 gataaagaca cccaaaaacg tttcttagaa tgggcgaaga aaaatataaa ataaacctat
    45361 atcaattaat aagcggtcat ttctcgccaa ttttttgcaa ggtgttaaaa aaatgaccgc
    45421 tcatacaatg agatttacca gcaataatag cagtaacgcc agcctctata catatagtct
    45481 ctatcgtaat tccaacgaat ttcttcaagt tctacttgtg ccttgtaatt ttgccaagca
    45541 agcttataac aggcttggaa cattggggca ttgacttttt cggcatagcg tttcttaaat
    45601 gctttctctt cttgttcggt ttggctaagc ggcggattaa attgttggta cattaactcc
    45661 gccgtttcta catcacattg tttggcgagc tgaacttgca aatcttgttc tgcccgaatt
    45721 tgcttcgctt tacgttcagc ttgttgctct ggagttaaag tacagctact taacataagt
    45781 gcgagtgaaa aaatgcagcc taatttgagt gttttcattg ctgaatcctc tagttgaaat
    45841 tggtgattta ttctaccgct tctaactcac tttcttcaag ttcatcagcc atagcactaa
    45901 gggcatcacg gctaagttgt gcgagggctt tataaaaacc attgtcgaaa gcttctattt
    45961 ttcctaagaa tttgcctgca caaggtagta aaaattgttc gaataatatt ttttgagcta
    46021 aggcagaatc gagattatct tcgatccaag atgccgtgag aaatagtaac ccaatgtgat
    46081 cggcattttc taattcaggc attgcccgct cttgtctaaa agctacaaaa ttattaactg
    46141 ataatccata ggctgaaatt gttggagaaa tagccccatt ttcagcaaaa agcgcttgat
    46201 agcttgctgc taattgcgta gggttagcat tcttttgtaa gagagtcagc gcattttcac
    46261 tttggctatc cgtatttaat gcccagactt ggcgtaatcc tccttgggca agccagttaa
    46321 atgtgccagc taaaataggg tcggtagggt gacgataaaa taagttgcca aacaaacggc
    46381 aaagcaggga aaaatcgtta atggtagttt cgttcataat ttgaaataga tagaaaaaag
    46441 aattgttagt atagcagaac acaagagagg actgaatgaa atatataggc gcacacgtta
    46501 gtgcttcagg tggggtggaa aatgcagttt tgcgttccgt agaaattggt gctaatgcat
    46561 ttgcgttatt tactaagaat caacgtcaat ggcaggcacc ggcattaaaa gccgaaacta
    46621 tcgaaaaatt taagcgtttt tgtaaagtgc atcatttttc agcagagcaa atcttaccac
    46681 acgatagcta tttgattaat ttaggaaatc cggaagcgga ggcattggag aaatctcgtg
    46741 tagcatttat tgatgagatg tctcgagcaa atcaattagg tttaaaattg ttgaattttc
    46801 acccgggggc gcatttaaag caaatttccg agcaagattg tttggctaga attgcagaat
    46861 cgatcaatat tgcagttgaa aaagtaccga atgttattgc cgtgattgaa aatacggcag
    46921 gacagggttc taatttaggt tggcatttcg atcatttggc aactattatt gagcaagttg
    46981 aggataaaag ccgagtgggg gtgtgtttag atacttgtca cttattttct gccggctatg
    47041 atattagttc ttatgaaaag agcgaggcag tatttaatga ttttaaccaa acggttggtt
    47101 ttcattattt aaggggaatg cacttaaatg gttcaaaaac accattaggc agcagagtgg
    47161 atcgtcatca taccttaaga gaaggcacaa taggaaccga agtgtttgca tttattatgc
    47221 aaaatatgca ttttaaccat attcctatga ttttagagac aatttcgcct gaaatttggg
    47281 cagatgaaat aaaatttcta cgcacattgg aactaaaata ggttatactg gtctgagtag
    47341 tgggtctagc agagtctaga ccttattttg ttatcttttt taatctttta gaagatttag
    47401 ttaaggaatt taccgctgta attgttctgg cgagacgaga cataaattat gaaaaaaaat
    47461 ctttttgcaa caaccttcaa gcccgtattt attgcttcta ttttgtctgt ttttggaggg
    47521 tattcttcca ttgctgtagc aagtttaagt tctaaaccgg ccacaccaaa tcaaatcatt
    47581 gcaagtaaag cagaaagatt agctaagtct tcttcagtat ttaccaatcg agcaaatctt
    47641 ccaacttctt ccgctcatac agcgaattat agtggtcgta ttaatagtgt ttatcataat
    47701 tgggtaggga cacgctatcg tttaggcggc acaacaaaag caggaattga ttgttccgcc
    47761 tttgtgcgtg aagtaatggg caaagcattt agtaaagata tgcctcgttc aactgcagaa
    47821 caacgccatg tcgggcattc catttcaaaa tctgatttac gcccaggtga tttagtcttt
    47881 ttccgtaaga ataaccatgt aggggtttat attggtaatg gtaaatttgt acacgctagt
    47941 tcaagtagag gggtaaccac cagctcattg tcagaaagct actggtcaag aaactacaca
    48001 caatctcgcc gtgtaattta ataaattaca attccaagat gaaaagaaca ctcacttttg
    48061 cgagtgttct tttttaatta aaaaagttta tgctacgcgt tgcttagctt gtgtaaatgc
    48121 tccacgagta cgcatttgat gaaccacatt agtaattaca cctgctattt ttacttcagc
    48181 ccaatcagta attctaagat ttgattcgct cacatctaat gaaaataaaa ttttttcagc
    48241 aataccttcc ccattctgaa tttcattaaa gaattgatag aatttatatt ccccatcttt
    48301 ttcaagcacc aatagatcat taactaaata ttggttggtc tgttctacaa tcaataaatc
    48361 gtctagttca attccccacg cgattaaatt tgggtttttc acgtggataa aaaaagtgtc
    48421 tcttgggcgt ttgatacaaa gtgagttaag atcgagcttt acagagcggc tgctattgaa
    48481 atcccgataa agcggaatcg gctgataagc tgccgtttga tctgaaattt gtctaattga
    48541 agccatagta aaatcctcta tctgtttttt tatacagggt attttactgg ctaaaatacc
    48601 agtgtcaacc attattttgg aattttttgt aaatttaacc agtgttttga ccgcttgtta
    48661 tcctttaaaa agcaataaaa aagcacccat agggtgcttc ttatgcttaa aagctgttat
    48721 tataggcttt cagtgaatgt acgagtaata acatcgcgtt gttgctcagg ggttaatgag
    48781 ttgaaacgaa ctgcataacc tgaaacacgg atcgttaatt gaggatattt ctcagggttt
    48841 tgaatcgcat cttctaatgt ttcacggcgt aaaacgttta cgtttaagtg ctgaccacct
    48901 tcaactttaa tcgttggtgc aacattaacg ggtacttcac ggtatgcgat atcacctaat
    48961 tcgctgatag caacaacttg atcttcttca aatcctgctt ttgcagctaa acaacgagct
    49021 tcatttttag cttcgtctaa taaccagaaa gagtttaata agttgctgtt tgatgattct
    49081 gtgatttgt
//
LOCUS       DANMBQ010000007        43386 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.007, whole genome shotgun sequence.
ACCESSION   DANMBQ010000007 DANMBQ010000000
VERSION     DANMBQ010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 43386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43386
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.007"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..1234)
                     /locus_tag="PXE92_000336"
     CDS             complement(<1..1234)
                     /locus_tag="PXE92_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HDL5759627.1"
                     /translation="MFRPILKTFVLSLGLMLNSYALAELPTQQVVQTQLDSAKKLDQA
                     DADNKALVQTLEDTLAFLAQIDKQKADNQALNKSIQDSQKALKTSQHNLEKLKEVTIA
                     SVDNLTQKATTDLQKELTSTQSQLETVQHDLSIINNNLVAQNTAPDKAQTALTEMVKR
                     KQEISSQLSATNIKNELQTKLEVELELIELKNTYNQILLGGSEDLSALYSAQLDEKKQ
                     EQQNLQAEIANLQTAINNKIVEESQNKLDQAQAVQNQQNNATTNPVILRELDINTKVT
                     QELLKQTKDMTQLSQDNLRIKSVLDNLQQTQRNIEEQISSLQGTLVLSRIINKQKQSL
                     PQDEMISGLSKQIADLRVRVFDITEFKDSFADINAYISRIEQDEKTTFTSKEKEQLSK
                     ILQERSDTLTEMIKSLNNQ"
     gene            complement(1227..2645)
                     /gene="menE"
                     /locus_tag="PXE92_000337"
     CDS             complement(1227..2645)
                     /gene="menE"
                     /locus_tag="PXE92_000337"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HDL5759628.1"
                     /translation="MLINSTRFPTQFWAAHSAQNVAIIWEKGTSDYLNHLPSNITWYS
                     LNQLIAQAIFVLQQQGATPHSLIAYCGSHRLIGLLTYCASLALGAKILMLNPAQTASQ
                     RQAVLDDNGVELIINDADFAKFSAKTTACNAFPTIDFEKPATLTLTSGSSGKPKAVVH
                     SIAAHLYSAEGVCELMAFEQPNSWLLSLPLFHVSGQGIIWRWLFKGATLYVHEDKSDF
                     FLSAQKVSHLSLVPTQLQRYLNQLDSMVSQKCLLGGSMLPAELIAQAQQSGMTTFSGY
                     GMTEMASTICAVENDLNSVGFPLKHRELKLENGEIWVKGKSLGLGYWQKNGQIRPLVN
                     TQGWFATKDRGEWNHKKQLVIKGRLDNMFISGGENIQPEEIEQLIFRSQLVEQIIVLP
                     IEDKQFGHRPVAFLQFKQSDSKNELHKLKIWLSDKLERFKQPVAYYLLDIEKYQKQGL
                     IKLSRTQLQQDLKLKVLKEIYV"
     gene            complement(2655..3221)
                     /gene="seqA"
                     /locus_tag="PXE92_000338"
     CDS             complement(2655..3221)
                     /gene="seqA"
                     /locus_tag="PXE92_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HDL5759629.1"
                     /translation="MKRIEIDDELYQYIASRTQSIGETASDILRRLLRLPQSPQPFVL
                     VQEHMINELKELVKTPSRATKKNESNAEKTVEKLENILNSEHFMNENKNVVRFTMLLA
                     ALYRANPEAFAKATEKVRGNERIYFSQSEAEILATGSGVKAKQIPDSPFWVITNNNTA
                     RKGLILKGVMESMKVPSQLIERIQALFI"
     gene            3340..4122
                     /locus_tag="PXE92_000339"
     CDS             3340..4122
                     /locus_tag="PXE92_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL5759630.1"
                     /translation="MTEKSQLNFNYQPSNNHANAQTMIFLHGLFGDLNNLGAIAKPFA
                     ERYSILMVDLRNHGRSFHSDEMNYALIAQDLAQLLTELNIQNAIVVGHSMGGKSAMAL
                     AAFAPELVEKLVVIDIAPVTYTQNRHQQVMAALFAVKEAKPQNRQQAKAIMAEYIRDE
                     GVQQFMLKSFDAQSEQSFRFNLQALKDNYQNVMGWQQVFVDKPTLFIKGALSDYIQAE
                     HTQTILAQFPQAKSFIVANADHWVHAEKTGTVVRAINKFLEK"
     gene            4132..4860
                     /gene="cmoA"
                     /locus_tag="PXE92_000340"
     CDS             4132..4860
                     /gene="cmoA"
                     /locus_tag="PXE92_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HDL5759631.1"
                     /translation="MQRDTLFSAPIEKLGDFTFDESVAEVFPDMIQRSVPGYSNIITA
                     IGMLAERFVTDNSNVYDLGCSRGAGILSIRRNVNAKNVQIIGVDNSQPMVERCKTHLS
                     AYHSEIPVTILLDDIRHIEIKNASMVVLNFTLQFLPREDRLALLQKIYQGLNSNGILV
                     LSEKFTFESEEMNELLIDLHHTFKRANGYSELEVSQKRNALENVMRTDSIETHKKRLQ
                     EAGFTQVELWFQCFNFGSMIAIKA"
     gene            4996..6015
                     /gene="purR"
                     /locus_tag="PXE92_000341"
     CDS             4996..6015
                     /gene="purR"
                     /locus_tag="PXE92_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HDL5759632.1"
                     /translation="MATIKDVAKYAGVSTTTVSHVINKTRFVAEDTTKAVWEAIKALN
                     YSPSAVARSLKINTTKSIGMIITTSESPFFAEIVLAVEEFCYSKGYSLFLCNTQNKLE
                     KIQNHLDMLIKKRVDGILVMCSEYTANSFDIFENSNIPMVIMDWGRSDERSDIILDHG
                     VEGGYIATQHLIENGHQDIAVITGNRDKEIARTRFEGFKKALSEAGLSIREEWIQEGD
                     FEPEGGYECMNNLLKSSEKLPTAVFCFNDSMALGAISAITEKGLNVPQDISVIGYDNV
                     HSSRFYAPPLTTIHQSKSRLGSAALELLLERIEDNENAKEPKVLEFFPELVKRKSVRN
                     LNIKE"
     gene            6017..6619
                     /locus_tag="PXE92_000342"
     CDS             6017..6619
                     /locus_tag="PXE92_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5759633.1"
                     /translation="METLIEFFSSYGYWAVFLVLLACGFGVPIPEDITLVSGGVISGL
                     GYTNVHWMLVVSMLGVLVGDSTMYWLGRIYGEKILKFPLIRNVATPERFATVQERFEK
                     QGWKLLFMARFLPGLRAVVYLVSGITRKVSFVKFLLVDFCAAIISVPIWVYLGDYGAS
                     NLDWLKEQVANGQHLIFAILGIVILFLGWKWYKNKKQYKK"
     gene            complement(6748..6903)
                     /locus_tag="PXE92_000343"
     CDS             complement(6748..6903)
                     /locus_tag="PXE92_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009041538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HDL5759634.1"
                     /translation="MLHYAVVFFVIAIIAALLGFGGIAGSATEIAKILFFVFLILTVI
                     SFFFKKK"
     gene            complement(6981..7562)
                     /gene="dcd"
                     /locus_tag="PXE92_000344"
     CDS             complement(6981..7562)
                     /gene="dcd"
                     /locus_tag="PXE92_000344"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDL5759635.1"
                     /translation="MRLCDTDIKRYLDEGIIAITPRPSDDKISGATADVRLGNSFRVF
                     REHKTPYIDLSGPREEVAAQLNKVMSDEIIIGDDEAFFLHPGDLALATTLESVSLPAN
                     IVGWLDGRSSLARLGLMVHVTAHRIDPGWEGKIVLEFFNAGKLPLALRPNMAIGALSF
                     EILSGDAAKPYNARKDAKYKNQQSAISSRINQD"
     gene            complement(7577..8224)
                     /gene="udk"
                     /locus_tag="PXE92_000345"
     CDS             complement(7577..8224)
                     /gene="udk"
                     /locus_tag="PXE92_000345"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HDL5759636.1"
                     /translation="MTDTSQTSSCVVIAIAGASASGKSLIASTIYKELKNELGTDNIG
                     IISEDAYYRDQSHLTMEERIKTNYDHPNSMDHHLLVEHLRQLKQGNAIEIPEYDYTEH
                     NRKTTTKHFEPKKIIILEGILLLTDENIRNEINVSIFVDAPLDICFIRRLQRDMVERG
                     RSMESVISQYRKTVRPMFLQFIEPSKQYADIIVPKGGKNRIAIDILKAQIKQLLK"
     gene            8328..8957
                     /locus_tag="PXE92_000346"
     CDS             8328..8957
                     /locus_tag="PXE92_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HDL5759637.1"
                     /translation="MDIFIQGFIVCFGLIVSIGAQNAFLLKQGILKQHIFWIALLCFL
                     GDVFLMTIGVLGLGTLIAELPVVSFIISLLGAIFLLSYGSRSFISVFKSGEYLVASGE
                     NATSLKKALLITFAITFLNPHVYIDTVVIVGSIGGKLDFNGKIYFLAGALLCSFIWFF
                     GIGYGASLLSPYFAKRRTWQILDAVTGLIMYFIAFSLLIYTYQLALQIF"
     gene            9072..10124
                     /locus_tag="PXE92_000347"
     CDS             9072..10124
                     /locus_tag="PXE92_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HDL5759638.1"
                     /translation="MFKKFLGLFSNDLSIDLGTANTLVYVKGQGIVLDEPSVVAVRQD
                     RMGSLKSIAAVGSHAKLMLGRTPKSIMAIRPMKDGVIADFFVTEKMLQHFIKQVHSNN
                     FMRPSPRVLVCVPAGATQVERRAIKESAIGAGAREVYLIEEPMAAAIGAGLPVHEAMG
                     SMVIDIGGGTTEVAVLSLNGIVYSTSVRIGGDKLDEAIIAYVRRHFGSAIGEATAERI
                     KQEIASAKIESDDDVKTMEVHGHNLAEGAPRTFELNSRHVLEAIEQPLNGIVEAVKSV
                     LEQCPPELAADIFERGMVLTGGGALLHNLDRLLSDSTGVQVVVAEDPLTCVARGGGKA
                     LEMIDMHGGDVFSIDD"
     gene            10226..11281
                     /gene="mreC"
                     /locus_tag="PXE92_000348"
     CDS             10226..11281
                     /gene="mreC"
                     /locus_tag="PXE92_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDL5759639.1"
                     /translation="MKPIFAKAPSLGMRLIIAVIFSIMLIISDGRSSLMIQARNLLET
                     AVSGLYYFANTPRSILDGVSGNFIDNNKLQLENNLLKEQLREKSADLLLLDQLKVENQ
                     RLRLLLSSPLRQDEYKKIAEVLAAEMDAYRQQVVINQGRLDGAFVGQPIIDERGVVGQ
                     VISVGEKSSRVLLLSDITHAIPVQVLRNDVRGIASGTGVNNELVIDNLPRSIDVVKGD
                     VLVTSGLGGRFPEGYPVAIVETVENDTKSQFARIVARPLASFDRLRYLLLLWPTAEEK
                     NYSQSLSPAQVREVVEERRNSVNPFERLKQMSNKKTEVQLEAKEEQIENDEINENPAA
                     QPEAENEQNYHTEEGAE"
     gene            11281..11769
                     /gene="mreD"
                     /locus_tag="PXE92_000349"
     CDS             11281..11769
                     /gene="mreD"
                     /locus_tag="PXE92_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HDL5759640.1"
                     /translation="MRTNPIFQILVIIAIFVVAFVLEIMPWPVGFQGLRPTWVVLVLI
                     YWALALPDKMSVGTAFIAGIVWDLILGSILGIHALVLSVAIYFVAKYHLILRNLSLWL
                     QSLLVMAYIVLIRFFIFVIEYILHSAEFNSQELLGAVISGVLWSWIFLLMRHIRRQLR
                     LR"
     gene            11779..13116
                     /locus_tag="PXE92_000350"
     CDS             11779..13116
                     /locus_tag="PXE92_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HDL5759641.1"
                     /translation="MSSLSFDFSEDFRPLAAKMRPRNLAEYVGQSHLIGEGKPLRRAI
                     EAGHSHSMIFWGPPGTGKTTLAEIIAHHLDAEVERISAVTSGVKEIREVIEQAKLNRQ
                     AGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
                     LKPLQAVEILKILQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMV
                     DMAQDSAKGKVLNKSLLTEVLGERQARFDKGGDRYYDLISALHKSIRGSSADGALYWY
                     ARILTAGGDPLYVARRLLAIASEDIGNADPRAMQIAIVAWDCFTRVGAYEGERAIAQA
                     IIYLAVAPKSNAVYQAFNEAKRLAKEAKDYDVPAHLRNAPTQLMKSLGYGEEYRYAHN
                     EPNAYAAGENYFPPELKDTEFYFPSERGMEKQIKEKMAWLKAQDQASPIQRYK"
     gene            13203..13988
                     /gene="znuB"
                     /locus_tag="PXE92_000351"
     CDS             13203..13988
                     /gene="znuB"
                     /locus_tag="PXE92_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HDL5759642.1"
                     /translation="MFDILFPAWLAGVLLAFITAPLGAFVVWRKMAYFGDTLSHSALL
                     GVALGIFLELDPYLAVIGMTILLALLLVWLEQKTNYSVDTVLGIIAHTSLSLGVITIS
                     LLDNVRVDLMSYLFGDLLAINFSDVVFIGIGATLICLILMLFWKRLLSITISPELAQI
                     EGLNVARLRLLLMILTALTIALSMKFVGALIITSLLIIPSATARRFAKTPEKMVLIAI
                     FFSIIAVSGGLLLSSWKDTPAGPSVVICAGLIFLLSLFKKEYH"
     gene            14113..14913
                     /locus_tag="PXE92_000352"
     CDS             14113..14913
                     /locus_tag="PXE92_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HDL5759643.1"
                     /translation="MCQLLGMNCNTPTDITFSFDGFRRRGGLTDHHTDGFGIAFFEGK
                     GVRVFRDNRPGASSPMAEAISQYQIKSLNVIAHIRKATRGDVNLENTHPFIRELWGEN
                     WVFAHNGTVEGVGVCEECHYQPIGTTDSEAAFCRIVSELKEMYPAKPSEKEIFDAVVQ
                     ITSRIAEHGVFNFVLSNGHWMIARCTTNLHYVCRKAPFGKALRDDDVSIDFSQYTKIT
                     DKVTIIATQPLTKNENWTKMKNGGYVFFKDGDVVYEIEGTLPEAQPHV"
     gene            complement(14948..15841)
                     /gene="ispA"
                     /locus_tag="PXE92_000353"
     CDS             complement(14948..15841)
                     /gene="ispA"
                     /locus_tag="PXE92_000353"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HDL5759644.1"
                     /translation="MSYLLATDLTHLQQRINHFLAEKLKTTDSVGSPLVEAMAYAVLL
                     GGKRVRPFLIYATGRMLGVPLEKLDHSAAAMEAIHAYSLVHDDLPAMDDDRLRRGKPT
                     CHIAFDEATAILAGDALQSFAFELLATDPHLTDREKVVQVTELATASGAKGMCLGQSL
                     DLIAENKAVSLEELELIHRNKTGALILSSVMMGLNLSEYSQNVAIKQPLVNYAKAIGL
                     AFQVQDDILDVIGETDKIGKIVGSDEHLNKSTYPKLLGLDGAKQKAEMLYQTALHSLE
                     QLPFDTTALKELANFIVKREN"
     gene            complement(15847..16077)
                     /gene="xseB"
                     /locus_tag="PXE92_000354"
     CDS             complement(15847..16077)
                     /gene="xseB"
                     /locus_tag="PXE92_000354"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDL5759645.1"
                     /translation="MAKKPTQDFESTLKELEAIVTHLESGDLPLEEALNEFETAIKLV
                     QQGQERLQKAEQRIQILLNKNDTAPLSDYERE"
     gene            16202..16990
                     /locus_tag="PXE92_000355"
     CDS             16202..16990
                     /locus_tag="PXE92_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDL5759646.1"
                     /translation="MQVTELNIYPIKSTQAIQVSQAFVEPKGLNFDREFMLAEPNGKF
                     ITARKDPELYRLAAFPIATGVMITHTSGQKCVALYQDFVEEQSSEVWGTHFNAKVAAE
                     AVNQWLSEIFGRAVQLRWLGSQSQRIVANFADHPMSFADSNPVSLMSLKSLEQVQQWS
                     PIPLEMARFRPNIVIDGNVAFEEEQWQQVQIGEVLFTKAALCTRCILITRDLNTLELD
                     PKSEPFRTLKEKHCDEKGKPVFGIHLVPQNSGVIKVGDPVIIQL"
     gene            17023..18972
                     /locus_tag="PXE92_000356"
     CDS             17023..18972
                     /locus_tag="PXE92_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HDL5759647.1"
                     /translation="MYQRSQSRTVLFPILLFVGINLVILTLSRLVLGVWQSDRVSAVD
                     GWIPLILQGIRIDISSLCWLFGLPALFSVLCFHKNVLGSIWQTVLRIWLTVGSVFILF
                     MEVATPNFIETFDLRPNRLFIEYLVHPREVFTMLINGHLWAVICGIGIAMISLIIYWK
                     LSGWATKNLHFPSWKMRPLLALLVAAIVFVGGRSSFAHRGINPAMVAFSSDPLVNSLV
                     LNSGYSVLYAVQQLKDEDKSSEQYGKMSVEEMFNIVKQVRNRPASDYISDEIPTLTQN
                     KATYQGKPKNIVIILEESLGAQFVGSLGGKNLTPNLDKLSEQGWYFTNLYATGTRSVR
                     GIEAVTAGFTPTPARSVVKLTKSQTNFFSIAELLKRQGYHTSFIYGGEKHFDNMASFF
                     YGNGFQQIIDEKDYKNPKFTATWGVSDEDLFDKANETFNQLHKSGKPFFSLVFSSSNH
                     DPFEFPDGKIELYEQPKQTRHNAAKYADYAIGHFFELAKKSEYWQDTVFLVIADHDSR
                     AVGEHLVPIQHFHIPALLLGEHIQPRTDNRLVSQLDMPTTLLSVAGISGQYPMIGYDL
                     TQDIDPNRAFMQYDATQAMMRGNDVVVMRPNLPIEGFSYDKANYKLTPKEQPESFKKE
                     ALAHALLGSYLYKNQLYKLPEETKQ"
     gene            complement(19043..19960)
                     /gene="nagK"
                     /locus_tag="PXE92_000357"
     CDS             complement(19043..19960)
                     /gene="nagK"
                     /locus_tag="PXE92_000357"
                     /EC_number="2.7.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HDL5759648.1"
                     /translation="MAIYYGLDVGGTKIELAAFNEKLEKLHSERVPTPQTNYQDWLTA
                     IKTLVETADTKFDEKGTVGLGIPGFVNRETGIAEITNIRVADGKTILKDLAECLGREV
                     RAENDANCFALSEAWDESNKPYSTVLGLIIGTGFGGGFVFDGKIHSGRIGMAGEVGHM
                     QLNYHALKLLDWDKAPIYECGCGNQACLDTYISGRGFELLFNDLVGEKISAKAIIERF
                     YQQETKVVAFVEKYIELMAISISNLITILDPDMIVFGGGLSNFDYIYQALPKALPKHL
                     MRSAKVPVIKKAIHGDSGGTRGAAALFLK"
     gene            complement(19973..20335)
                     /locus_tag="PXE92_000358"
     CDS             complement(19973..20335)
                     /locus_tag="PXE92_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759649.1"
                     /translation="MYQVFIAEPKDPNLEKGLLKHFIKSYLTQEELDFLHKILTNLPN
                     IRPFWGDTGYKYIVIDNVYFLYEVSESETKVILLGTKFNNKRKTFNFANTKTQQKSMK
                     KWINDLAIYKPHKINQSQ"
     gene            complement(20343..20504)
                     /locus_tag="PXE92_000359"
     CDS             complement(20343..20504)
                     /locus_tag="PXE92_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759650.1"
                     /translation="MEMSIEKIAELLSDKEKDDYPFSIEERQFAAQASADTWEAILNN
                     TIQPFDFKK"
     gene            complement(20573..21295)
                     /locus_tag="PXE92_000360"
     CDS             complement(20573..21295)
                     /locus_tag="PXE92_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HDL5759651.1"
                     /translation="MFKKFSLYTLAMLLIPVVTWLANWHWSLAIQYAEFDFDYFLYLI
                     TETGSVPYAIITCVVFALLLARVVRKRYSLIFVITVCVASMVATQAIKTAMKSTFQEP
                     RPFVTALFQDKTDDFYQLTREQRGLAVMEKIGANQNFVTAHQAKEVGYSFPSGHTIFA
                     VSWLLLVVGFCRNMRGQAVVLAHFFAISWAALMLISRLRLGMHYPIDLFTSSLIAFLI
                     NLALFVWFVPWLESKKWFAKKP"
     gene            complement(21356..21670)
                     /gene="yhbY"
                     /locus_tag="PXE92_000361"
     CDS             complement(21356..21670)
                     /gene="yhbY"
                     /locus_tag="PXE92_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HDL5759652.1"
                     /translation="MSITLTTKQKQFLKGLAHHLSPVVMLGGNGLTEGVLAEIDNALD
                     HHELIKVKVAGADRETKQLIIDAILRETKAAEVQTIGHILVLYRQSEEKKISLPKATK
                     AI"
     gene            21797..22555
                     /locus_tag="PXE92_000362"
     CDS             21797..22555
                     /locus_tag="PXE92_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5759653.1"
                     /translation="MPTLSVAMIVKNEAQDLRACLDTVKDWVDEIVILDSGSTDETPQ
                     IAAEYNARFYTNTDWQGFGKQRQLAQQYVTSDYVLWLDADERVTAELKQSILQAVKND
                     EKNTVYKISRLSEVFGKQIRHSGWYPDCVVRLYRTEFAKYGDELVHEKVHYPKEAKIQ
                     KLQGDLLHFTYKDIHHYLVKSASYAKAWAIQRANAGKTASLFDGVTHAIGCFVKMYLL
                     KAGFLDGKQGFLLAVLSAHSTFVKYADLWNRTRK"
     gene            complement(22620..23660)
                     /locus_tag="PXE92_000363"
     CDS             complement(22620..23660)
                     /locus_tag="PXE92_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5759654.1"
                     /translation="MKKLLVIRNDKIGDFMVCFPAFAMLKQSMPNVEITALVPSYTAP
                     LAELCPSIDKIIIDTANKKDKNEFNRILQAVKNEQFDAVICFVSDWHNAKLTWQSGIK
                     YRLAPATKLFQFLYNHRLTQRRSQSAKAESEYNLDLARAFLSKHNIPIVEPHTPYLSV
                     EQQTVQAQKAKLCEQLNITTVKKWVFVHSSTGGSANNLSIEQYAELIQGILAEFDCYV
                     VLTAGKGESEKAQQLAQQINHNNVVVYDKNEGLQDFTHSLACADLFIAGSTGPLHISG
                     ALNIPTIGFYPSRLSAIPRRWKPINDANKHIAFCPPSDKASQMNLTLISISEALKTIV
                     PFIRRMWNTPSL"
     gene            23844..25175
                     /gene="argG"
                     /locus_tag="PXE92_000364"
     CDS             23844..25175
                     /gene="argG"
                     /locus_tag="PXE92_000364"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005722481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDL5759655.1"
                     /translation="MSATILEALPLGQKVGIAFSGGLDTSAALLWMRKKGAVPYAYTA
                     NLGQPDEDDYNAIPKKAMEYGAENARLIDCRQQLAHEGIAAIQCGAFHISTGGIPYFN
                     TTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPKLKIYKPWLD
                     QLFIDELGGRLEMSKFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEELSTGMKIV
                     KPIMGVAFWDESVEIKAETVSVTFEEGVPVALNGKRIDDAVELIMEANRIGGRHGLGM
                     SDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGLRLGRLLYQ
                     GRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEK
                     VEDAPFTPADRIGQLTMRNLDIVDTRGKLAVYTDAGLLAANNSVIPQLGKK"
     gene            25268..25729
                     /gene="rnhA"
                     /locus_tag="PXE92_000365"
     CDS             25268..25729
                     /gene="rnhA"
                     /locus_tag="PXE92_000365"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HDL5759656.1"
                     /translation="MKLVEIFTDGSCLGNPGKGGIGILLRYNGYEKTVSKGYFQTTNN
                     RMELRAVIEALAMLKEPCKVQLNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNKDL
                     WVALDQEIQRHQIEWSWVKGHSGHRENEICDELAKQGANNPTLDDVGYIAD"
     gene            25875..26378
                     /locus_tag="PXE92_000366"
     CDS             25875..26378
                     /locus_tag="PXE92_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDL5759657.1"
                     /translation="MVDLIVIGIIAFSVLISLWRGFTNEALSLLGWVIAFFVASSFYP
                     YLSGYLTQINSVYLQNSEFLRNGIAAAILFILTLIVCGVINGLLGKVIDLSGMSITDR
                     ILGGAFGALRGILIVSAILFFLDTFTQASQTELWKSSLLIPHFDFIVKWFFEQLQANS
                     SFLNTTK"
     gene            26393..27910
                     /gene="purF"
                     /locus_tag="PXE92_000367"
     CDS             26393..27910
                     /gene="purF"
                     /locus_tag="PXE92_000367"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL5759658.1"
                     /translation="MCGIVGIIGNSPVNQAIYDGLTLLQHRGQDAAGIVTIDDENRFR
                     LRKANGLVSDVFQQEHMVRLQGNVGIGHVRYPTAGSSSVSEAQPFYVNSPFGITLVHN
                     GNLTNNAELKARLYNEARRHVNTNSDSESLLNIFAYFLDLYSTQHLSPDNIFETVRKT
                     NDSIRGAYACIAMIIGHGMVAFRDPFGIRPLVLGKREIEGKTEYMFASESVALDVVGF
                     EFVRDVLPGEAIYVTFDGQLHSQICADNPKLNPCIFEYVYFARPDSVIDGVSVYSARV
                     HMGELLGEKIKREWGRIIDDIDVVIPIPETSNDIAVRIANMLYKPYRQGFVKNRYVAR
                     TFIMPGQAQRKSSVRRKLNAIASEFKGKSVLLVDDSIVRGTTSEQIVEMARAAGAKRV
                     YFASAAPEIRYPNVYGIDMPTCEELVAYDRSVEEVAQMIGVDKLIFQDLEALYKSIQL
                     ENPTIHRFDDSVFTGEYITGDVDKCYLDSIARSRNDKAKAEAAKQATNLEIHNER"
     gene            complement(27944..28393)
                     /locus_tag="PXE92_000368"
     CDS             complement(27944..28393)
                     /locus_tag="PXE92_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759659.1"
                     /translation="MLKKLSAIFLLLPSAVLANNLQNITASTEPKYKISEIDVRILIR
                     QLNNIEQCIYPELAKPGYQQIYANWNLAENLTMQYFEYQLLKELLGEENQKLMQNDTL
                     STEYFHLLHSRLNHQKANVDPEKCDTFKPRYKEIYKSMENALTKKNQ"
     gene            complement(28406..29512)
                     /gene="mltA"
                     /locus_tag="PXE92_000369"
     CDS             complement(28406..29512)
                     /gene="mltA"
                     /locus_tag="PXE92_000369"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HDL5759660.1"
                     /translation="MNWKAYKKAIAAASVVAIATVLVACSSSGQKGKTTSYDAEKAKF
                     GAKYNGRHFMPYGTHFQAGRLGLNAAPVNQLDFLQQLSNVRAYSSLADSYAIAYGKIS
                     RWISSGGNINDLAKYGISTRLMRGEDGYQNVLMTGYYSPVIKARRTPQGQYQHPIYAM
                     PSSKRFSRAEIYAGALQGQGLELAYSNSMLDNFLLGVQGSGYVDFGDGRLNYFAYAGQ
                     NGFKYASVGRLLVEDGEIPKEKMSVQAIREWGQRNPSRVQGLLERNPSYVFFKNDPTG
                     QVKGSAGVPLVPLASVASDRSIVPSGSVLLVEMPLIDSKGNWTGKHEMRLMVALDVGG
                     AVKGHHFDLYQGIGDKAGHIAGLMKHYGRVWVLN"
     gene            29722..29798
                     /locus_tag="PXE92_000370"
     tRNA            29722..29798
                     /locus_tag="PXE92_000370"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:29756..29758,aa:Met,seq:cat)
     gene            29949..31409
                     /gene="xseA"
                     /locus_tag="PXE92_000371"
     CDS             29949..31409
                     /gene="xseA"
                     /locus_tag="PXE92_000371"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDL5759661.1"
                     /translation="MSNILTVTQLNYSVRHLLEMEMSHIWLTGEISNFSQPVSGHWYL
                     TLKDDKAQVRCAMFKMKNVRVNFRPQNGMQVLVRASVTLYEPRGDYQLIIESMQPAGE
                     GLLQQQFEQLKAKLSAQGLFAQEHKKPIPTFVKTVGIITSSSGAALQDILHILQRRDP
                     SLSVVIYPALVQGKEATQDIVNMIELANRRNECDVLIVGRGGGSLEDLWCFNEESVAY
                     AIYHSQIPIISAVGHETDVTIADFVADLRAPTPSAAAELVSRDQNELKRQLQHQFDKV
                     NLAFDRVWNHKFNRFQQLPLRLNAQHPSKQIQSQQQRFDYMEYRLEQAIYALVAAKKQ
                     VGKELNVRLIHQHPQKQIERQSQMLKQLELKLHWQMEQQLSKKQQKWKNITQRFERNP
                     LPYQLYQQQTMVAKMSQRLAYSIEKIMLKEQRHFQELCTKLDGLSPLKILTRGYSITQ
                     TKDGKTLTSTENIERGEAIITQLKTGKIISQVVDFL"
     gene            31721..31806
                     /locus_tag="PXE92_000372"
     tRNA            31721..31806
                     /locus_tag="PXE92_000372"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:31755..31757,aa:Leu,seq:caa)
     gene            31904..32728
                     /locus_tag="PXE92_000373"
     CDS             31904..32728
                     /locus_tag="PXE92_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDL5759662.1"
                     /translation="MKPLQNGTNKPFTITIASTKGGSAKSTNAANIGAFCAEHGLRTL
                     LIDTDTQPTLSSYYELEYQAPGGTYEFLHFKDVDPTHIISRTTIPNLDLIQSNDPSNK
                     ISPMLRDSPDGALRFSLLLQKIEGYDVIIIDTRGTRDITVDMSVLAADVLFCPILPHI
                     LSAKEFIRGTIGMYQDLETFTAFGFTLPPLKAMINCVDHTKDVKLVSDYLHTLFQNEF
                     DENKTLLEFSVPDRVAYREAATFSKPVYRQSQAEYETISQLCALLMPQFANSHFSA"
     gene            32740..34101
                     /gene="dnaB"
                     /locus_tag="PXE92_000374"
     CDS             32740..34101
                     /gene="dnaB"
                     /locus_tag="PXE92_000374"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL5759663.1"
                     /translation="MSSLNKSLVQPHSIEAEFSVIGGLLLDNELFDEVSSKINEGDFY
                     NFTHRLLFKHISELIEAGKPADILTLDQYLTQKKVIEDLGGFAYLAEIVKNTPSTANI
                     HAYTDIVLLYSKQRQLLKLGQFIVDQTQSAKTPDKFEAVVDDIEKKITEFSLSDNTKS
                     AADLSDIFANMLSRMELSAKNGDPVTGTPTGIQGIDEATTGGQPGDLIVIGARPSMGK
                     TAFSQTIAYHTLKKFESAPVFYHSMEMPADQILQRFLAMRARVGLQNIRQADSLDDEE
                     WSKLTSAMGYILEHWKNRLVIDDEGSLTPQKLRTKVRQNARKYGKPAAIFIDYIQLMQ
                     TSQRYENRNLEIANISRSLKLLAKEMDCPVYALSQLNRSVEQRANKRPINSDLRESGS
                     LEQDADVILFIYRDEVYDADSPFKGTAEIIIGKQRNGPLTSVMTNFRSEFALFENRTN
                     TTH"
     gene            34110..35756
                     /locus_tag="PXE92_000375"
     CDS             34110..35756
                     /locus_tag="PXE92_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL5759664.1"
                     /translation="MTKDEKRLAAIAKGLNVSPISNTAPSYQTATPTHYSSDVEYITV
                     TLDKLRPYEHNPRKTRNPNFEMIKESIRRRGLDHKPNITRRPGEDFYIIADGGNTRIQ
                     ALKELFTETKDPKFWSISCQYKPWQGDTADSVEAELNLLIGHLIENDTRADLSFIEKA
                     LGILQAKEYYEKKLGKSLSSRELSSELENDGYIISHALILKMERCVNYLYPHIPEVLF
                     SGLGHTQIDKLLAIRNNAEEVWAAHQFDTDVTFESLWSENLSKFNEATPFQAKEFQSE
                     LITAMVEALEGKVSFETLYLDIDLDEQKFKKIAAKQQEIDNLVEKTVDQINTRQEQQT
                     AKSEPLIKNENKAVTPQKAQHIIDEVIDDNESDDEQNNAITDLSQLGSSLLDNQDNQE
                     DYLSQIAHNFGLTPGMSIQEQREQRAEANGLTFACEGRQPVEDIWLIHPARQYRSEAY
                     SLALDIAESMGIDHLVEHIVKQPVDYTYAMKPADTELSPSALTLYSFLSMLQTAEHKD
                     ENSCVLDSKFLFELDDLTLVKIFRLIRVSRHIRQQGGEND"
     gene            35749..36306
                     /locus_tag="PXE92_000376"
     CDS             35749..36306
                     /locus_tag="PXE92_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2857 domain-containing protein"
                     /protein_id="HDL5759665.1"
                     /translation="MIKPITVNEALIGNALLNIKEGNIHPCLKMGFSEEQLKAINNLS
                     IDEIMDISNSVVSFAKVEINHETFWKLLAIAQANTQQRQIIDRALLLGASIEMLHQYF
                     GLSTSEVSARRQLLGIEEKMGRKAAASDEESTHIWEIWQRYKQRMEILDSQEGLELLC
                     LIAEEGNMNLTVVWKLVSEWYSKHK"
     gene            36465..37655
                     /locus_tag="PXE92_000377"
     CDS             36465..37655
                     /locus_tag="PXE92_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759666.1"
                     /translation="MFSSTNKPTEHGLLFFGNQHETVPTRLLQDPCLTPRAKFAWQLI
                     KCNVQAFQGGLFPSYETLSKMLSDRPYAEAKLSEKVVTQTLYLLRLTRWLTLCETVRD
                     ERGYVQGNVYILHDEPVPILDAIQLNSDYLSFLDKCTKHKDSLINGVANHIVESLITD
                     KTKWHYVSHLDCLQSRYQIYQQQQLVKDKQPSQTEQELSKIQQNILTSTMEVRDFDEE
                     VRKKSSKNQTSNKGVRAKNEDKSLILDLLPLGKSDVQYRTLYINKYCTGEPSEITWPQ
                     EIPLTSLEQKLTAQAMKGLDLGLCQAILLEVQQRIIQKQDVKKPKGYLYTLIQRAKQG
                     EFKPYYFELGKNLPSQNQANNNSAHSIQKLTEQPTEKPVLTSADREQMASRMQKFRAE
                     LLLQ"
     gene            37834..38592
                     /locus_tag="PXE92_000378"
     CDS             37834..38592
                     /locus_tag="PXE92_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03761 family integrating conjugative element
                     protein"
                     /protein_id="HDL5759667.1"
                     /translation="MTTQLDPQLGPLRSEITFTLHTQYAHKLWVGRPMIRNEEGKVTQ
                     SSIISVPNCFAMLTQIQRAASEDDPYADDYLIQFEESVINYRKEIQKLTNDIVTLYAK
                     MLPEGISIERCANISPISYPIYVNSQLGYQLLYLLGDFDSLCRSVMTAAHIAIINRAE
                     AQDWIEAGARLIRKCFGIVERYKSSGITRRDYQEKNARYQAAIKRMGYTLSDAVLTGE
                     HRAEFAPFIKQNTTVEEEQSVETHITAQTNESQK"
     gene            38601..39086
                     /locus_tag="PXE92_000379"
     CDS             38601..39086
                     /locus_tag="PXE92_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3158 family protein"
                     /protein_id="HDL5759668.1"
                     /translation="MNLISDEIYRQLVKDSGLNTSLKQLFSHFDTGSDYELLQEQFTQ
                     ARAYFMAAQDSMVQSVRQDLSPLAVYMIKDKASSSGGTFLRWRSMQNARTGGTVWQPI
                     VDDKSVPVEVRKKVVAVEKDRILINMQISVFNHILRQLADCAEKLKEVDNAVAKSDLN
                     S"
     gene            39442..39894
                     /gene="ssb"
                     /locus_tag="PXE92_000380"
     CDS             39442..39894
                     /gene="ssb"
                     /locus_tag="PXE92_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5759669.1"
                     /translation="MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNT
                     GERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEGKLRTRKWQDQNGQERYTTEIQG
                     ELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF"
     gene            40201..40389
                     /locus_tag="PXE92_000381"
     CDS             40201..40389
                     /locus_tag="PXE92_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759670.1"
                     /translation="MSYDANDALNEIEEALSELERVAEDLINNNPNKESELRGQGVHQ
                     ATKHLRFRIRNIRRGEAI"
     gene            40430..40732
                     /locus_tag="PXE92_000382"
     CDS             40430..40732
                     /locus_tag="PXE92_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759671.1"
                     /translation="MKIKLYFPDESIATIKRMGLRQMSPETLRWTADHPSSSYGMGAL
                     LRGKSGEILDGKSFAAMVHAFGAWIETDSEDTSRRVHNALVTAATGTEESVKVAKE"
     gene            40732..42042
                     /locus_tag="PXE92_000383"
     CDS             40732..42042
                     /locus_tag="PXE92_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HDL5759672.1"
                     /translation="MSNILNWPDYKVLQVSELEHDYQVHAEVSEPPTQCPHCNHPEIV
                     GFGRRDEVIMDTPVHGRRTGIMLNRRRYRCQSCRKTFLEPVPHKDEKRQMTNRLIQYI
                     ERESLRRTFSSVAEDVGVDEKTVRNIFNDYCERLEKTLNFEMPQWLGIDEIHIIKPRC
                     VITNIQQQTIVDMLDNRNKTTVTRYLSKRTDRDLVRYVAMDMWRPYRQAVETMIPDAT
                     VIIDKFHVVRMANESLERARKAIRSALTPQQRRGLMRDRFVLLKRRHELTDAEYMRFS
                     GWTLNYPEIGQAYELKEAFFEIWDCQTRHQAQEAYYSWLRQITPEMKAHYDPLIKAMG
                     NWHDDIFAYFDHPITNAYTESLNNLIRVVNRVGRGYSFEALRAKILFTEGFQKIKKPR
                     YQRQRIPEGAMGRMPFYGVAEAGPSTNYGADISTLVREIEAGRL"
     gene            complement(42138..43340)
                     /gene="tet(H)"
                     /locus_tag="PXE92_000384"
     CDS             complement(42138..43340)
                     /gene="tet(H)"
                     /locus_tag="PXE92_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(H)"
                     /protein_id="HDL5759673.1"
                     /translation="MNKSIIIILLITVLDAIGIGLIMPVLPTLLNEFVSENSLATHYG
                     VLLALYATMQVIFAPILGRLSDKYGRKPILLFSLLGAALDYLLMAFSTTLWMLYIGRI
                     IAGITGATGAVCASAMSDVTPAKNRTRYFGFLGGAFGVGLIIGPMLGGLLGDISAHMP
                     FIFAAISHSILLILSLLFFRETQKREALVANRTPENQTASNTVTVFFKKSLYFWLATY
                     FIIQLIGQIPATIWVLFTQYRFDWNTTSIGMSLAVLGVLNIFFQAIVAGKLAQKWGEK
                     TTIMISMSIDMMGCLLLAWIGHVWVILPALICLAAGGMGQPALQGYLSKSVDDNAQGK
                     LQGTLVSLTNITGIIGPLLFAFIYSYSVAYWDGLLWLMGAILYAMLLITAYFHQRKTT
                     PKAVISTP"
BASE COUNT        12948 a         8262 c         9147 g        13029 t
ORIGIN      
        1 gctgattatt taatgattta atcatctcag ttaaagtgtc agaacgttcc tgtaaaattt
       61 tactcagttg ttctttctct ttactcgtaa aggttgtttt ttcatcttgc tctatgcggc
      121 tgatataagc atttatgtcc gcaaaagagt ctttaaattc agtgatatca aaaacacgta
      181 cacgtaaatc tgcaatttgt tttgatagtc cggaaatcat ttcatcttgt ggtaatgatt
      241 gtttttgctt attaataata cgagaaagca ccaacgtacc ttgcagagaa ctgatttgtt
      301 cttcaatatt acgttgggtt tgctgtaagt tatctagcac acttttgatt cgcaaattat
      361 cttgtgataa ctgcgtcata tctttggtct gttttagcaa ctcttgtgtg actttggtat
      421 ttatatccaa ttcacgcaag ataactgggt tcgtcgttgc attattttgc tgattttgaa
      481 ccgcttgtgc ttgatctagc ttgttctgag actcttctac aattttattg ttgatagcag
      541 tctgcaggtt tgcaatttct gcttgtagat tttgctgctc ttgctttttt tcatctaatt
      601 gagcagagta aagcgcagat aaatcctcgc tgccaccaag taatatttga ttgtaagtgt
      661 tttttaattc tattaattct aattctactt ctaactttgt ctgtagttca tttttaatgt
      721 tagtcgctga aagttggcta ctaatttcct gtttacgttt aaccatctcg gttaaggccg
      781 tttgagcctt atccggtgcg gtattttgtg caactaaatt attattaata atacttaaat
      841 cgtgttgtac tgtttccagc tgagattgtg tagaggttaa ctctttttgt aaatctgttg
      901 tcgctttttg tgttaaatta tcgacacttg caatagtcac ctcttttaat ttttcaagat
      961 tatgttggct tgtttttaat gctttttggg aatcttgaat agatttattc aatgcctgat
     1021 tatctgcttt ttgtttatca atttgggcta agaaagcaag cgtatcttca agtgtttgaa
     1081 ccaatgcctt attatccgca tcggcttgat ctaatttttt ggcgctatct aactgcgttt
     1141 gcactacctg ttgggttggc aattcagcta atgcataact atttagcatt aagcctaaac
     1201 taagcacaaa tgtttttaaa atcggtctaa acatagattt cctttaatac tttgagtttt
     1261 aaatcttgtt gtaattgtgt tcttgatagt ttaattaagc cttgtttttg gtatttttct
     1321 atatccagta aataataggc aacaggctgt ttgaatcttt ctaatttatc agacagccaa
     1381 atttttaatt tatggagttc attttttgaa tcagattgct tgaattgtaa gaacgccact
     1441 ggtcgatgtc caaattgctt atcttcaatc ggcaacacga taatctgttc gacaagctga
     1501 gaacgaaaaa tcagttgttc aatttcctca ggttggatat tttcccctcc tgaaataaac
     1561 atattatcca atcgtccttt tattacaagc tgttttttgt gattccattc gccacgatct
     1621 ttagtggcaa accagccttg tgtgtttaca agcggtcgaa tttgcccatt tttttgccaa
     1681 tagcctaagc cgagtgattt gccttttacc caaatttcac cattttctaa ttttagttcc
     1741 cgatgtttta acggaaaacc aacactgttt aaatcatttt ctactgcaca aatggttgat
     1801 gccatctcag tcattccgta gcctgaaaag gtagtcatcc cagattgttg tgcttgagca
     1861 atcaattcgg ctggaagcat agatccaccc agtaaacatt tttggctgac catagaatct
     1921 aattggttta aatagcgttg taattgggtg gggactaaag agagatggct cactttttgt
     1981 gctgaaagaa aaaaatcact tttgtcttcg tgaacataca gtgttgcacc tttaaataac
     2041 caacgccaaa taatgccttg tccggaaacg tgaaacagag gcaagctcag tagccaagag
     2101 tttggctgct caaatgccat taattcacat actccttcgg cactatagag atgggccgct
     2161 atagaatgca ccactgcttt aggtttaccg cttgagcctg aggttagggt tagggtagct
     2221 ggtttttcaa aatcaatcgt agggaaggca ttacaagcgg tcgtttttgc tgaaaatttt
     2281 gcaaagtcgg catcattaat aatgagctca acaccattgt catctaagac tgcttgtcgt
     2341 tgacttgctg tttgagcagg gttaagcatt agaatcttag cccccaaagc aaggctagca
     2401 caataagtga gcaagccaat gagccgatga gaaccacaat aggcaatcaa actgtgcgga
     2461 gtagcacctt gttgttgcaa cacgaaaata gcttgcgcaa tcaactgatt caaactatac
     2521 caagtgatgt ttgatggaag gtggttaaga tagtctgatg ttcctttttc ccaaataatc
     2581 gccacatttt gggctgaatg agcagcccaa aattgggtag gaaagcgagt agaattgatg
     2641 agcatttcaa ttaattagat aaaaagcgct tgaatgcgtt cgattaactg gcttggtact
     2701 ttcatggatt ccattacgcc tttgagaata agtcccttgc gtgcggtatt attattggta
     2761 attacccaaa acggtgaatc tgggatctgc ttggctttta ctccactccc agtagctaaa
     2821 atttcggctt cactttgcga aaagtagata cgttcattac cacgcacttt ttcggttgct
     2881 ttagcaaaag cctccggatt tgctcgatat aatgcggcta atagcatagt aaaacgcact
     2941 acatttttat tttcgttcat aaaatgctcg gaatttaaaa tgttttccaa tttttcaacg
     3001 gttttttctg cattggattc attttttttc gtagcacgag aaggcgtttt gacaagctct
     3061 ttaagctcgt tgatcatgtg ttcttgtact aaaacaaaag gctgaggcga ttgtggcagg
     3121 cgtaatagac ggcgtaatat atctgacgca gtttcaccaa tagattgtgt acggcttgca
     3181 atatactgat ataattcatc atcaatttcg attcgtttca tcgggatcct caaatatctg
     3241 cgggtattaa atgcgttaat agtgcttgct attatacgca tttctattgt tttttataga
     3301 ggaacatcgc tgaaaattta tatgaacaat gacatttata tgacagaaaa atcgcagtta
     3361 aactttaatt accaaccttc gaataatcat gctaatgctc agacgatgat cttcttacat
     3421 ggattgtttg gagatttaaa taacctaggc gcaatagcaa aaccattcgc agaacgttac
     3481 tccattttaa tggttgatct cagaaatcac gggcgatctt ttcattcaga cgaaatgaat
     3541 tatgctttga ttgcacaaga tttagcacaa ttactcacag aattaaatat ccaaaatgct
     3601 attgtggttg ggcattcaat gggcggaaaa agtgcgatgg cattggctgc atttgctcct
     3661 gaactggtgg agaaattggt agtgattgat attgccccgg tcacttatac ccaaaatcgg
     3721 catcagcagg ttatggcagc cttatttgcg gtgaaagaag ctaaacccca gaatcgtcag
     3781 caagctaaag cgataatggc tgaatatatt cgagatgaag gcgtgcaaca gtttatgttg
     3841 aaatcttttg atgcccaaag cgagcaatct ttccgtttta atttacaggc gctaaaagat
     3901 aattatcaga atgtgatggg gtggcagcag gtatttgtgg ataaaccgac cttgtttatt
     3961 aaaggtgcat tatcggatta tattcaagca gagcatacac aaacgatttt ggcacaattt
     4021 ccgcaggcca aatctttcat tgtggcaaac gctgatcatt gggttcacgc agaaaaaaca
     4081 ggaactgttg tgagagcaat caataaattt ttagaaaaat aagggagaaa aatgcaaaga
     4141 gatacattat tttccgctcc gattgagaaa ttgggcgatt ttacttttga tgaatcggtt
     4201 gctgaagtgt ttccggatat gatccaacgc tccgtgccgg gctattccaa tattattact
     4261 gctattggaa tgttggcgga gcgttttgtc acagataatt caaatgttta tgatttaggt
     4321 tgttcacgag gcgcagggat tttatctatt cgccgtaatg tgaatgcgaa gaatgtgcag
     4381 attatcgggg tagataattc tcagccgatg gttgagcgtt gtaaaaccca tttaagtgct
     4441 tatcactctg agatcccggt gacgatttta cttgatgata ttcgccacat tgaaattaaa
     4501 aatgcttcaa tggtggtact taatttcacc ttgcaatttt taccaagaga agatcgccta
     4561 gcattattac agaagattta tcaaggatta aattccaatg gcattttagt gttatcggaa
     4621 aaatttacct ttgagagtga ggaaatgaac gagctattga tcgaccttca tcacacattc
     4681 aaacgagcaa atggctacag tgaattggaa gtcagccaaa agcgtaatgc tttggaaaat
     4741 gtgatgcgaa cagatagtat tgaaacccat aaaaaacgtc tgcaagaagc tggttttaca
     4801 caagttgaac tttggtttca atgctttaat tttggctcaa tgattgcaat taaagcctaa
     4861 caagcggtga tatttgtaaa attttttgca aattcttgat aaaaagcaac cgcttgcatt
     4921 ctatctattt ctttataata aaagtcagtt agaatcagtt ataatgcacc actacttatt
     4981 taggaggaaa aaggtatggc aacgataaaa gatgtcgcaa aatatgctgg tgtatcgact
     5041 acaacggttt ctcacgttat aaacaaaacc cgctttgtag cagaggacac tacaaaagca
     5101 gtttgggagg ctattaaagc gctgaactat tctcctagtg ctgtagcgcg gagtttgaaa
     5161 attaatacga ctaaatctat cggtatgatc attacaacca gcgaatcacc gtttttcgct
     5221 gaaattgtgt tagcggtaga ggaattttgc tatagcaaag ggtattcact atttttgtgc
     5281 aatactcaaa acaaacttga gaaaattcaa aatcatttag atatgctcat caaaaaacgg
     5341 gttgatggca ttttggtgat gtgctccgaa tatacagcta attcatttga tatctttgaa
     5401 aacagcaata tcccaatggt gattatggat tggggacgaa gtgatgaacg cagtgatatt
     5461 attttagatc acggtgttga aggtggctat attgcgactc agcatttaat tgaaaacggg
     5521 catcaagata ttgctgtaat taccggcaat agagataaag aaattgcaag aacccgtttt
     5581 gaaggtttta aaaaagcgct atctgaggcg ggtttgtcta ttcgtgaaga atggattcaa
     5641 gaaggcgatt ttgaacctga gggggggtat gagtgtatga ataatttgct taagagcagt
     5701 gaaaaattac caaccgcggt tttttgtttt aatgactcaa tggcactagg ggcaatttca
     5761 gctattaccg aaaaagggct gaatgtgccg caagatattt cagtgatcgg gtatgataac
     5821 gtgcatagct cacgctttta tgcaccgcct cttacgacaa tccatcagtc aaaatctcgc
     5881 ttaggctcgg cagcattaga attattatta gaacgtattg aagataacga aaacgcaaaa
     5941 gagcctaaag tattagagtt ctttcctgaa ttggtcaaac gtaaatcggt tcggaattta
     6001 aacattaagg agtaatatgg aaacattgat tgaatttttt agtagctatg gttattgggc
     6061 tgtttttctt gtgctacttg cctgtggttt cggtgtgccg attcctgaag atattacgtt
     6121 agtatccggt ggtgttattt caggattagg ctacaccaat gtgcattgga tgctggttgt
     6181 tagtatgtta ggagtattag ttggcgatag cacaatgtac tggctaggta gaatctatgg
     6241 cgaaaaaatt ctcaaatttc cattaatcag gaatgttgcg acacctgaac gttttgcaac
     6301 cgtgcaagaa cgttttgaaa aacaaggatg gaaactactt tttatggctc gttttttacc
     6361 tggcttgcgc gcggtggttt acttagtttc aggtattacc agaaaagtca gcttcgtaaa
     6421 atttttatta gttgatttct gtgccgctat tatctctgtg ccaatttggg tttatttagg
     6481 cgactatggg gcatctaatt tggattggct aaaagaacaa gtagctaatg ggcagcacct
     6541 catttttgcc attttaggca ttgttattct atttttaggc tggaaatggt ataaaaataa
     6601 aaagcagtat aaaaagtgaa acaaaagacg agcatttcat cttaaaaaga tataatagca
     6661 aaacagttgg taagaataat tataaatatc cattaccaac tgtttttttg aactatattt
     6721 taacttaaaa aattaggttt aactgtgtca ctttttcttg aagaagaacg aaataacagt
     6781 aagtattaaa aagacaaaaa agagaatttt ggcaatttca gtagcacttc cagcaatacc
     6841 accaaatcct aatagcgctg cgattatagc gatgacaaaa aatacgactg cataatgtaa
     6901 catagttata ctccttactg tgtaataaac tgattaaaaa actaacatag ttaatgtatg
     6961 attgcaaggc atgtactata ttaatcttga ttaatccgac ttgaaatggc actttgctgg
     7021 ttcttatatt ttgcatcttt tcgcgcatta tagggttttg cagcatcacc acttaaaatc
     7081 tcaaagctta atgcgccaat tgccatatta gggcgtaaag ctaggggtaa ttttccagca
     7141 ttaaaaaatt ccaatacaat tttgccttcc caacccggat cgattctgtg ggcggtaacg
     7201 tgtaccatta agcctaatct agcaagtgac gaacgaccat ctaaccatcc aacgatattg
     7261 gctggtaagg aaaccgattc aagggttgtt gcgagtgcaa ggtcaccggg atgaaggaaa
     7321 aatgcttcat catcaccgat gataatttca tcactcatca ctttatttaa ctgagcggca
     7381 acttcttctc tagggccact taaatcaata tagggcgttt tatgttcacg aaatacacga
     7441 aacgaattac ctaaacgcac atctgcagtg gcgccagaaa ttttatcgtc tgaaggtcga
     7501 ggcgttatgg caataatacc ttcatctaag taacgtttaa tatctgtatc acataaacgc
     7561 atatttagct cctattttat tttagtaatt gcttaatttg tgctttaaga atatcaatgg
     7621 caatacggtt tttgccacct tttggcacaa taatatcagc atattgttta gagggttcga
     7681 taaattgtaa gaacattggg cgaacggttt tgcgatattg actaatcact gattccatcg
     7741 aacgtccacg ttccaccata tcacgttgta agcggcggat aaagcagatg tccagaggag
     7801 catctacgaa aatagaaaca ttaatttcat tgcgaatatt ctcatctgtc agcaataaaa
     7861 taccttctaa aataatgatt ttctttggtt caaagtgctt cgtggtcgtt ttacgattat
     7921 gttcggtata gtcatattct ggaatttcaa tcgcattacc ttgttttaat tggcgtaaat
     7981 gttcaaccaa taaatgatga tccattgaat tagggtgatc gtaattggtt ttaatccgtt
     8041 cttccattgt tagatgagat tgatctctat aataagcatc ttcggaaata ataccgatat
     8101 tatctgttcc caattcattt ttgagttctt tatagatggt tgaggcaatc aggctcttac
     8161 ctgaggcaga tgcgccggca atcgcaatga caacgcaaga tgaagtctgg ctagtatcag
     8221 tcataaaaaa tttcctattc agtcaaaaga gtattcgata aattataccg aagttttgca
     8281 aaattttttg tataattgac cgcttgttat gcgattttgg agaaaaaatg gatattttca
     8341 ttcaaggatt tatagtgtgt tttggcttaa ttgtctctat tggcgcacaa aatgcctttt
     8401 tattaaagca agggatttta aaacaacaca tattttggat tgcattgctc tgttttttag
     8461 gtgatgtatt tttaatgacg ataggtgtgc taggcttagg cacgttaatt gcggaattgc
     8521 ctgttgtaag tttcattatt tcgcttttag gggccatttt tctattaagc tacggtagcc
     8581 gttcatttat cagcgtattt aaaagtggtg aataccttgt ggcaagtgga gagaatgcaa
     8641 cgagcttaaa aaaggcttta ctgattacct ttgcgattac attcttaaat cctcacgttt
     8701 atattgatac ggttgtgatt gtaggcagta tcggtgggaa attagatttt aacggtaaaa
     8761 tatacttttt agcaggtgca ttactttgct catttatttg gttttttggc ataggttatg
     8821 gagcaagctt actttcccct tattttgcaa agcgaagaac ttggcaaatt ttagatgctg
     8881 ttaccgggct aattatgtac tttatcgctt ttagtttact gatttatact tatcaacttg
     8941 ctctgcaaat tttctagtgg agtttaaatt ttttcattga tgaatgacgg gcttttttgc
     9001 tatattagta gcaatgttcg cactataaaa tgtgcttatt tttgaataat tttattttaa
     9061 cggattcttt tatgtttaaa aaatttttag gattattttc aaacgatctt tctatcgatc
     9121 tcgggacagc aaatacactg gtttatgtta aaggtcaagg tattgtgcta gatgaaccct
     9181 cagtggttgc tgtacgtcaa gatcgtatgg gatcgctaaa aagtattgcg gcggtaggct
     9241 cacatgcaaa attaatgcta ggccgtacac caaaaagcat aatggcgatt cgtccaatga
     9301 aagatggtgt cattgcggat ttttttgtaa cagaaaaaat gttgcaacac tttattaaac
     9361 aagtacatag taataacttt atgcgcccaa gccctcgtgt attagtgtgc gtgccagcag
     9421 gtgcaacaca agtggaacgc cgtgcaatta aagaatctgc aattggagca ggagcgcgtg
     9481 aagtctattt aattgaagag ccaatggcgg ctgcaatcgg tgcaggtttg ccggttcacg
     9541 aagcaatggg gtcaatggta attgacattg gtggcggtac aaccgaagtg gcagtgcttt
     9601 ctttaaacgg cattgtgtat tcaacttctg tgcgtattgg tggtgataag ttagatgaag
     9661 ctattattgc ttatgtacgt cgtcattttg gttctgctat tggtgaagca acggcagagc
     9721 gaattaaaca agaaattgct agtgctaaga ttgaatccga tgatgatgtt aaaacaatgg
     9781 aagtacacgg acacaattta gctgaaggcg ctcctcgtac tttcgagctt aactcaagac
     9841 atgtattaga agcaattgaa caaccattaa atggtattgt agaggcagtt aaatcagtct
     9901 tagagcaatg cccacctgaa ttggcagcag acatttttga gcgcggtatg gtgttaacag
     9961 gaggtggtgc attattacat aatttagatc gtttactttc tgattcaact ggcgtgcaag
    10021 tcgtagtagc agaagatcca ttaacttgtg tagctcgtgg tggtggtaaa gcattagaaa
    10081 tgatcgatat gcacggtggt gatgtattta gtattgatga ttaatacatt tctcttagca
    10141 gctgtttaaa tggaggttgg caatggattg attctattgt caattttcgt tatagattcc
    10201 caataaattc acatatattt ctctaatgaa acctattttt gctaaagctc cctctttagg
    10261 gatgcgcctg attatcgcag tgatattttc tattatgctg attatttccg atgggcgtag
    10321 ctctttaatg attcaagcgc gtaatctatt agaaaccgcg gtaagtggat tatattattt
    10381 tgctaatacc ccccgttcaa ttttagatgg ggtaagtggc aattttattg ataataataa
    10441 attacagctt gagaataatt tattaaaaga gcagctaaga gaaaaaagtg ccgatttatt
    10501 attgcttgat cagctaaagg ttgaaaatca gcgtttaaga ttgttattga gttctccgct
    10561 tcggcaagat gagtataaaa aaattgctga agtattagct gctgagatgg atgcttatcg
    10621 tcagcaagta gtgattaatc aagggcgttt agacggtgct tttgtcgggc aacctattat
    10681 tgatgaaaga ggtgttgttg gacaagttat ttctgtaggg gaaaaatcta gccgtgtttt
    10741 attgctctct gatattactc atgctattcc tgttcaagtg ctacgcaatg atgtacgtgg
    10801 cattgccagt ggtacagggg tgaataatga attggtcatt gataacttgc ctcgttctat
    10861 tgatgtggta aaaggtgatg tgctggtgac ttcaggctta ggtggacgtt tccctgaggg
    10921 atatccggtg gcgattgtag aaacggttga aaatgatacc aaaagtcaat ttgccagaat
    10981 tgttgctcgt ccgttagcct catttgatcg cttacgttac ttattactgc tttggccgac
    11041 ggcggaagag aaaaactact cccaaagctt gtcgccagcg caagtacgtg aagttgttga
    11101 agaaagacgt aatagcgtga atccatttga acgtttaaaa cagatgtcta acaagaaaac
    11161 tgaagtgcag ctagaggcaa aagaagaaca aatagagaat gatgagataa atgagaatcc
    11221 ggcagcacaa ccagaagcgg aaaatgaaca aaactatcat acggaagaag gagcggaata
    11281 atgagaacaa acccgatttt tcagatcctt gtgataattg cgatttttgt ggttgctttt
    11341 gtacttgaga ttatgccttg gccggtagga ttccaagggc tacgccctac ttgggtcgtt
    11401 ttggtgttaa tttattgggc attggcatta cctgataaaa tgagtgtggg gacggctttt
    11461 attgccggca tcgtctggga tctgattctt ggctcgattt taggcatcca cgccttagtg
    11521 ttatcggtgg cgatttattt tgttgcgaaa taccatctga ttctgcgaaa cttatcgcta
    11581 tggctacaaa gcctattagt aatggcatat attgtgctga tccgtttctt tattttcgtg
    11641 attgaataca ttttacacag tgccgaattt aattcacagg aattgttagg tgctgtaatc
    11701 agtggtgtgc tttggtcttg gattttctta ttaatgcgtc atattcgtcg ccaactgcgg
    11761 ttacgttaag aggttaaaat gagtagtttg tcttttgatt ttagtgaaga ttttcgaccg
    11821 cttgcagcca aaatgcgacc tcgaaacttg gctgaatatg tcgggcaatc tcatttaatt
    11881 ggcgaaggca aaccgttacg cagagcgatt gaagccggac atagtcattc tatgattttt
    11941 tggggaccgc ccggcaccgg aaaaacgacc ctagctgaaa ttatcgccca tcatcttgat
    12001 gcggaagttg aacgtatttc cgctgtgacc agcggtgtaa aagagatccg agaggtgatt
    12061 gaacaagcca aattaaaccg ccaagccggc agacgaacgt tgctttttgt ggatgaagtt
    12121 caccgcttta acaaaagcca gcaagatgcg tttttaccgc atattgagga cggcactatt
    12181 atttttattg gtgcgactac cgaaaatccc tcttttgagc taaataacgc actgctttcc
    12241 cgagccagaa tttatatttt aaagccgtta caagcggtcg aaattctaaa aattttgcaa
    12301 atggcgatag ccgataccga acgtggttta ggcaatgaaa ctttggtact tgaagatgat
    12361 gtactggcat tgcttgctga ttatgttaat ggtgatgccc gttttgcctt gaactgtttg
    12421 gaattaatgg tagatatggc acaagattca gctaaaggga aagtgctgaa taaaagtttg
    12481 ctgaccgaag tgttaggcga acgacaagct cgttttgata aaggcggtga tcgttactat
    12541 gatctcattt ctgcgttaca taaatccatt cgaggctcat cggctgatgg agcattatac
    12601 tggtatgccc gaattttaac cgccggtggt gatccgcttt atgtggcaag aaggctgctt
    12661 gcgattgctt ctgaagatat tggtaatgcc gaccctcgag caatgcaaat tgcgattgtg
    12721 gcttgggatt gctttacccg agtgggggct tatgaaggtg aaagagcgat tgcccaagcg
    12781 atcatttatt tggcagttgc cccaaagagc aatgcggtct atcaagcttt taatgaagca
    12841 aagcgcctcg ctaaagaggc aaaagactac gatgtgccgg cgcatttgcg taatgctccc
    12901 actcaattaa tgaaatcttt aggctatggc gaagagtatc gctatgccca caatgagcca
    12961 aacgcttatg ccgccgggga gaattatttc ccgcctgagc tgaaagatac cgaattctac
    13021 ttcccaagtg agcggggaat ggaaaaacag attaaagaaa aaatggcgtg gctgaaagca
    13081 caggatcaag ccagcccgat tcaacgttat aaataaatat gacaagcggt ctaaatcagc
    13141 aaaaaatttg caaatttttc cgaaaaaata accgcttgtt ttacttgcct ttgagaacca
    13201 atatgtttga tattttattt ccggcttggc ttgccggtgt tttgttagcc tttattaccg
    13261 cacctctagg ggcttttgtg gtgtggcgaa aaatggcgta tttcggcgac acactttcgc
    13321 actctgcatt gctcggcgtg gcattaggga tttttttaga actcgatccg tatcttgctg
    13381 taattggaat gactattctt cttgcattat tgctggtttg gttggagcaa aaaaccaatt
    13441 attcggtgga taccgtgttg gggattatcg cccatactag cctttctctc ggggtaatta
    13501 ccattagttt gttggataat gtacgagtgg atttgatgtc ttacttattc ggcgatttac
    13561 tggcaattaa tttttctgat gtggtgttta tcggaatcgg agcaacccta atttgtttga
    13621 ttttaatgct gttttggaag cggttgttgt cgattaccat cagcccggaa cttgctcaaa
    13681 ttgaaggatt aaatgtggct cgcttacgtt tattgctgat gattttaacc gcattaacta
    13741 tcgcattaag tatgaaattt gtcggtgctt taattattac ctcactgctg attattccgt
    13801 ctgctacggc aagacgcttt gctaaaacgc ctgaaaaaat ggtgttgatt gcgattttct
    13861 tcagtattat tgcagtcagt ggcggtttat tgttatccag ttggaaagat acaccagcag
    13921 ggccttcggt agtcatttgt gccggcttga tttttctatt atcgctattc aaaaaagaat
    13981 accattaaac agcataatgt atgaaaataa agcataagat ttttatgtaa agagcattga
    14041 attttctaat caatctgttt aaatgtaaca attatttttt gttgtaaatt atttggtttt
    14101 aagaagcaaa ttatgtgtca attacttgga atgaattgta atacgccaac cgatattact
    14161 ttttcttttg atggatttcg ccgtcggggt gggctgacgg atcaccatac tgatgggttt
    14221 ggaattgcct tttttgaagg caaaggggtt cgggtttttc gtgataaccg cccgggagca
    14281 tcatcgccga tggcagaagc aatcagccaa tatcaaatta aatcgctcaa tgttattgca
    14341 catattcgta aagctacgcg tggtgatgtg aatttggaaa atacccaccc cttcattcgt
    14401 gaattatggg gcgagaactg ggtgtttgcc cataacggca cagtggaagg tgttggggta
    14461 tgcgaggagt gccactacca gccgattggt acaaccgatt ccgaagcggc attttgccgt
    14521 attgtgtcgg aattaaaaga gatgtatccg gctaaaccaa gcgaaaaaga gatttttgat
    14581 gccgtggtgc aaatcacctc aagaattgcg gaacacgggg tatttaattt tgttttatcc
    14641 aacggtcatt ggatgattgc ccgttgtaca actaatctgc attacgtttg ccgtaaagca
    14701 ccgtttggca aagccttgcg tgatgatgat gtgtcgattg attttagtca atataccaaa
    14761 attaccgata aagtgacgat tattgccact cagccactta ccaaaaatga aaactggacc
    14821 aaaatgaaaa acggtggcta tgttttcttt aaagacggcg atgtggtata tgaaattgaa
    14881 ggcacattgc cggaagctca gcctcacgtt taatcactaa aaaacctagc ttcggctagg
    14941 ttttttctta gttttcacgc ttaacaataa aattagctaa ctcttttaat gcggtggtat
    15001 cgaaaggcaa ctgttccagc gaatggagag cggtttgata aagcatttcg gctttttgtt
    15061 ttgccccgtc taagcccaac aatttcgggt atgtgctttt atttaagtgt tcatctgaac
    15121 ccactatttt gccgatttta tctgtttcgc caatgacatc taaaatatca tcttgcacct
    15181 gaaaggctaa gccaatcgct ttggcatagt ttacaagcgg ttgttttatg gctacatttt
    15241 gcgaatattc ggaaaggttt aatcccatca tcacggatga tagaatcaat gccccggttt
    15301 tgttgcgatg aattaattca agctcttcca agctcaccgc tttattttcc gcaatcaaat
    15361 ccaaactttg ccctaagcac attccttttg caccggaagc ggttgccaat tctgtaactt
    15421 gaacaacttt ttctcggtcg gtcaaatgcg gatcggttgc cagcagttca aacgcaaaac
    15481 tttgtaacgc atcaccggct aaaatagcgg tagcttcatc aaaggcaata tggcaggttg
    15541 gcttgccacg gcgtaatcta tcatcgtcca ttgccggtaa atcatcgtga accagcgagt
    15601 aagcgtgaat agcctccatt gccgccgcac tatgatctaa tttttccaac ggcacaccaa
    15661 gcattctgcc ggtggcatag attaaaaacg gtcgcacccg tttaccgcct agcaataccg
    15721 cataagccat tgcttctact aaaggcgaac caacgctatc cgttgttttt aatttttcag
    15781 cgagaaaatg gttaatccgt tgttgcaggt gagtcagatc ggttgctaat agatagctca
    15841 ttgtgattat tctctttcgt aatcgctaag tggggcagta tcgtttttat ttaataagat
    15901 ttgaatacgt tgctcggctt tttgtaaccg ttcttgccct tgttgcacta atttgattgc
    15961 agtttcaaat tcgttgaggg cttcttcaag cggtaaatca ccggattcca aatgggtaac
    16021 gattgcttct aattctttaa gtgtgctttc aaaatcttga gtgggtttct ttgccattgt
    16081 tgctgaccta ttgctgtaaa agttgctcaa gtttaccgtt ctcacaaggg atttgcaaat
    16141 tccttttact tttcgaccgc ttgcaggtat tgttatccta tttccaaatg gaggattttc
    16201 tatgcaagtt accgagctca atatttaccc gataaaatca actcaagcta ttcaagtttc
    16261 acaggcattt gttgaaccga aaggcttaaa ttttgaccgt gaatttatgc tagccgagcc
    16321 taacggcaaa tttattactg cccgtaaaga tccggaatta taccgtctag cggctttccc
    16381 gattgcgaca ggggtaatga ttacccatac aagcggtcaa aaatgcgttg cactttacca
    16441 agattttgtg gaagagcaga gtagtgaagt gtggggaaca cattttaatg ccaaagtggc
    16501 ggcagaagcg gtcaatcaat ggctgagtga aatttttggt agggctgtgc aactacgttg
    16561 gcttggctcg caaagccaac gaattgttgc gaattttgcc gatcacccaa tgagttttgc
    16621 agatagcaac ccggtgagtt tgatgtctct aaaatcgctt gagcaagtgc aacaatggtc
    16681 gccgattcca ctcgaaatgg ctcgttttcg cccgaatatt gtgattgatg gcaatgtggc
    16741 atttgaagaa gagcagtggc aacaagttca aattggcgaa gtgctattta ccaaagcggc
    16801 attatgtact cgttgcattt tgattacacg ggatttaaac acgcttgagt tagaccccaa
    16861 atcggagccg tttagaacct taaaagaaaa gcattgcgat gaaaaaggta agccggtgtt
    16921 cggtattcac cttgtgccac aaaacagtgg tgtgataaaa gtaggcgatc ctgtcattat
    16981 tcaattataa tatgccgata tttttttaaa aggagattca aaatgtacca acgcagtcaa
    17041 tcaagaactg tgctatttcc aatcctacta tttgttggga ttaatttagt tatcctcacc
    17101 ttatcccgtt tagtgttagg cgtttggcaa tctgatcgag tatccgctgt tgatggatgg
    17161 ataccattaa tactacaagg tattcgcatt gatatatctt cgctatgttg gctatttggc
    17221 ttaccggcat tatttagcgt gttgtgtttt cataaaaatg tactgggttc gatttggcag
    17281 actgttttaa gaatttggct aactgtcggt agtgtattta ttctttttat ggaagtcgcc
    17341 acaccgaatt ttattgaaac ctttgacctt cgcccaaatc gtcttttcat tgagtatttg
    17401 gtccatccga gagaagtgtt cacaatgctg attaacggac atttatgggc tgttatttgt
    17461 gggattggca ttgcgatgat ttctctcatc atttattgga aattatcggg ttgggcaacc
    17521 aaaaatttgc atttcccgag ctggaaaatg cgtccgctac tggctttatt ggttgctgca
    17581 atagtttttg ttggtgggcg ttccagtttt gcccatcgag ggattaatcc ggcaatggtg
    17641 gcattttcaa gcgatccgct tgtcaattca ctggtgctaa attcaggtta ttccgtgctt
    17701 tatgcggttc agcaattgaa agatgaagat aaatcttccg aacagtatgg aaaaatgtct
    17761 gtggaggaaa tgttcaacat tgttaagcag gttcgtaatc gaccagcttc agattatatt
    17821 tcagatgaaa ttcccaccct cacgcaaaat aaagcgactt atcaaggaaa gcctaaaaac
    17881 attgtgatta tcttagaaga aagtttaggg gctcaatttg tcggttcgct aggagggaaa
    17941 aatctcactc caaatttaga taaactttca gaacaaggct ggtattttac caatctttat
    18001 gcaacaggta ctcgttcggt gagaggaatt gaagcggtaa cggctggttt tacaccaaca
    18061 ccggcaagat ctgtggtaaa actgacgaaa agccaaacta acttttttag tattgccgaa
    18121 ttattaaaac gtcaaggata ccatacttcc tttatttatg gtggggagaa gcattttgat
    18181 aatatggcga gctttttcta cggtaatggt ttccagcaaa ttatcgatga aaaagattat
    18241 aaaaacccta aatttaccgc aacttggggc gtgagtgatg aagatctgtt tgataaggca
    18301 aatgaaactt ttaatcaact gcacaaatca ggtaaaccgt tttttagttt ggtattcagt
    18361 tccagtaacc acgatccgtt tgaatttccg gacggcaaaa ttgaactcta tgaacaaccg
    18421 aagcagactc gccataatgc ggcaaaatat gccgattatg ctatcgggca tttctttgag
    18481 ttagcgaaaa aatcagagta ctggcaagat acggtgtttt tagtgattgc agatcacgat
    18541 tcaagagccg ttggcgagca tttagtgcca attcaacact tccatattcc ggcactttta
    18601 ttaggcgaac acattcagcc aagaacggat aaccgtttag tgagtcagct cgatatgccg
    18661 acaacattac tttctgtggc gggaataagt ggtcaatatc cgatgatagg gtatgattta
    18721 acgcaagaca ttgacccaaa ccgtgccttt atgcaatatg atgcgacaca ggcgatgatg
    18781 cggggaaatg atgtggtggt aatgcgacca aatttaccga tagaaggatt tagctacgat
    18841 aaagctaact ataaactcac ccctaaagaa cagccggaat cgtttaaaaa agaggcgtta
    18901 gcacacgcat tgcttggcag ttatttatat aaaaatcagt tatataaatt accggaagaa
    18961 actaagcagt aaggcaaatt aaaagagagg gctgcaatat ttttattaaa aatgaccgct
    19021 tgccctctct caaatttgtt cattacttta agaataatgc tgctgcacca cgagtgccac
    19081 ctgagtcgcc gtgaattgct tttttgatga ccggcacttt cgctgaacgc attaagtgtt
    19141 ttggtaatgc ttttggtaga gcttggtaga tataatcaaa gttggataaa ccgccaccga
    19201 atacaatcat atccggatct aaaatcgtaa tcagattgct gatactgatt gccattagct
    19261 caatatattt ttcgacaaat gccaccactt tggtttcttg ttggtagaag cgttcgataa
    19321 tcgctttcgc cgagattttt tctcctacta aatcattaaa cagtaactca aaaccccgcc
    19381 ctgaaatata ggtgtctaaa caggcttggt tgccacaacc acattcataa attggggctt
    19441 tatcccagtc gagcaattta agtgcgtggt agttaagttg catatgccca acttcgcctg
    19501 ccattccgat tctgcctgaa tgaattttac cgtcaaacac aaaaccaccg ccaaaaccgg
    19561 tgccgataat caaccctaat acggtggaat aaggcttatt actttcgtcc cacgcttcag
    19621 acagggcaaa gcagttagca tcgttttcgg cacgcacttc acgccctaaa cattcggcta
    19681 aatctttcag aatcgttttg ccgtcagcca ctcgaatatt ggtaatttcc gcaatgccgg
    19741 tttcacggtt tacaaagccc ggaatgccca gcccgacagt gcctttttcg tcaaattttg
    19801 tatcggcagt ctcaaccagc gttttaattg ccgtcagcca atcttgataa tttgtctgcg
    19861 gtgtcggcac acgttcgctg tgtagttttt ctagtttttc attaaaagcg gctaattcaa
    19921 tttttgtgcc gcccacatct aagccataat aaattgccat aattacgctc tcttattgcg
    19981 attgattgat tttatgcggt ttataaattg ctaaatcatt aatccatttc ttcattgatt
    20041 tttgctgggt tttcgtattc gcaaaattaa aagttttccg tttattatta aatttggtgc
    20101 caagtagaat gactttcgtt tcactttcgg aaacttcata caagaagtaa acattatcaa
    20161 tgacgatata tttgtaaccg gtatcgcccc aaaaaggtct gatgttgggt aaattagtga
    20221 gaattttatg caggaaatcg agttcttctt gagtaagata agacttaatg aagtgtttca
    20281 ataagccttt ctctaagttt gggtcttttg gttctgcaat aaaaacttga tacatagcaa
    20341 gcctattttt tgaagtcaaa aggttgaata gtgttattta agattgcctc ccaagtatca
    20401 gcactagcct gggcggcaaa ttgtctttcc tcaatactaa acggatagtc atctttttct
    20461 ttatcgctta atagttcagc tattttttct atcgacattt ccattctaag ctccttattt
    20521 taggtactta ttcaataatt tgtattgtat attgatttgg ctaaattgcc aattaaggct
    20581 ttttagcaaa ccatttttta ctttccaacc aaggcacaaa ccacacaaat aaggctaaat
    20641 tgattagaaa cgcaattaaa ctactggtga ataaatcaat cgggtagtgc atacctaaac
    20701 gcaagcggct aatcagcatt aacgccgccc aactgattgc aaaaaaatga gccaaaacga
    20761 ccgcttgtcc tcgcatatta cggcagaaac ctaccaccaa taatagccaa gaaaccgcaa
    20821 aaatagtgtg gcctgatggg aaagaatagc ccacttcttt ggcttggtga gcggtaacaa
    20881 aattttgatt tgcaccgatt ttttccatta cggcaagccc acgttgctcg cgtgttaatt
    20941 gataaaaatc gtctgtttta tcttggaaaa gagcagtgac aaatggacga ggctcttgaa
    21001 aggttgattt catcgctgtt ttgattgctt gagtggctac cattgaagcg acacacacgg
    21061 taatcacaaa aattaaagag tagcgtttgc gaaccaccct cgccagtaat aaggcgaaaa
    21121 ccacacaggt gatgatggca taaggtacgg agccggtttc ggtgattaaa tataaaaagt
    21181 agtcgaaatc aaattcagcg tattgaattg ccagagacca gtgccaattt gccagccaag
    21241 tcaccacagg aatgagcaac attgcaaggg tataaagaga gaatttttta aacatagaaa
    21301 gtcctataaa aaaccgcttg aatacaagcg gttgaattta aacatatttt tgcaattaga
    21361 tcgctttagt tgcttttggc aagctgattt ttttctcttc gctttggcgg taaagcacta
    21421 aaatgtgccc aatggtttgt acttcagccg ctttagtttc acgcagaatg gcatcaataa
    21481 ttaattgttt ggtttcacga tcagccccgg caactttaac tttaatcagt tcgtggtggt
    21541 ctaaggcgtt atcgatttca gctaacacgc cttctgttaa gccgttaccc cccagcatca
    21601 ccactgggct taaatgatga gccaagcctt ttaggaattg tttttgtttg gttgttaatg
    21661 taattgacat tctttttccg ttaatttgtt ttgttgataa aatttggcgt agaaaatagc
    21721 acaaaaacca ctatttttaa agtaaaatgc aacgaatagc agaaaaacac acgacaaaaa
    21781 gagagaagga taaactatgc cgacattaag tgttgcgatg attgtcaaaa atgaagctca
    21841 agatttacgg gcttgccttg acacagtaaa agattgggta gatgaaattg tgattttaga
    21901 tagtggcagt actgatgaaa caccacaaat tgctgctgaa tacaacgcaa ggttctacac
    21961 taacaccgat tggcaaggct ttggtaaaca gcgtcagtta gctcaacaat atgtgaccag
    22021 tgattatgta ctttggcttg atgcagatga gcgagtgaca gccgaactga agcaatctat
    22081 tttacaagcg gtcaaaaatg atgaaaaaaa taccgtttac aaaatcagcc gcttaagtga
    22141 agtatttggc aaacaaattc gccactcggg ttggtatccg gattgtgtgg tgagattgta
    22201 tcgcacggaa tttgccaaat atggtgatga attggttcac gaaaaagtac attacccaaa
    22261 agaggcaaaa atccagaaac tacaaggcga tttgctgcat ttcacctata aagatattca
    22321 ccactatttg gtaaaatcgg caagttacgc taaagcgtgg gcaatccaac gggcaaatgc
    22381 aggcaaaaca gccagcttat ttgatggcgt gactcacgcc atcggctgtt ttgtgaaaat
    22441 gtatctatta aaagccggtt ttttagatgg caagcaagga tttttattgg cagttctttc
    22501 ggcacattct actttcgtaa aatatgcgga tttgtggaat cgtactcgga aatgatgctt
    22561 ttcagtactc tctccctcta gtgggagaga gatagataaa attgcgttta gcaattttat
    22621 cagagagagg gagtattcca cattctccga ataaacggta ctatcgtttt taatgcctca
    22681 gaaatagaaa ttaaagttaa attcatttgt gaggctttat cagacggtgg gcaaaatgca
    22741 atgtgtttat tcgcatcatt aatcggtttc caacggcgtg gaatggcaga aagtcggctc
    22801 gggtagaagc caatagttgg aatatttaac gccccactaa tatgtaacgg accggttgag
    22861 ccggcaataa acaaatctgc acacgcaagc gaatgtgtaa aatcttgtaa cccctcattt
    22921 ttatcataaa ccaccacgtt gttgtgattg atttgttgag ctaactgctg agctttttcg
    22981 ctttcgcctt tccctgcggt gagtaccaca tagcaatcaa attctgccaa aataccttga
    23041 attaactctg catactgttc tatagataaa ttatttgccg aaccaccggt tgaactatgc
    23101 acaaataccc actttttaac ggtggtaata ttgagttgtt cgcataattt tgctttttgt
    23161 gcctggacgg tttgctgttc aacacttaag tatggcgtgt gaggttcaac aatcggtata
    23221 ttgtgtttgc ttaaaaaagc acgggctaaa tccaaattat attcggattc cgcttttgct
    23281 gattgagaac ggcgttgggt taaacggtgg ttatataaaa attggaataa tttagttgct
    23341 ggagcgaggc ggtatttaat cccactttgc caggtgagtt tggcattatg ccagtctgaa
    23401 acaaaacaaa taaccgcatc aaattgctca tttttaaccg cttgtaaaat acggttaaat
    23461 tcatttttat cttttttatt cgccgtatca ataataatct tatcaataga agggcaaagc
    23521 tcggcaagtg gagcagtata acttggcaca agagcggtaa tttccacatt cggcattgat
    23581 tgcttcaaca tagcaaatgc cggaaagcag accataaagt ccccaatttt atcattacgg
    23641 attacgagta gttttttcat tctgattttc tctattgctt ttaggttttc agtaaattat
    23701 aagcggtcaa atttcacaaa aaatttgcaa atcatcgggc taaattttag atgaattttt
    23761 actacttttc agctagaata ttttgcttga acgtaagcgt ttgcgtttga atatttttac
    23821 tttcaaaatt tataggaatt cgtatgtcag caacaatttt agaagcttta cctttagggc
    23881 agaaagtggg tatcgccttt tcaggcggtt tagatacctc agcagcactg ttatggatgc
    23941 gtaaaaaagg ggcagtgcct tatgcgtaca ccgcaaattt aggtcagccg gatgaagatg
    24001 attacaacgc aattccgaaa aaagcgatgg aatatggggc tgaaaatgca cgattaatcg
    24061 actgtcgcca acagttagct cacgaaggca ttgccgcaat tcaatgcggt gctttccata
    24121 tttcaaccgg cggtattccg tatttcaaca ccacgccact tggtcgtgcg gtaaccggca
    24181 caatgttggt tgcggcaatg aaagaagatg atgtgaatat ctggggcgat ggttcaacct
    24241 ttaaaggtaa cgatattgag cgtttctatc gttacggttt attaaccaat ccaaaattaa
    24301 aaatttataa gccgtggtta gaccaactat tcattgatga attaggcggt cgcttggaaa
    24361 tgtctaaatt cttaatcgaa aacggttttg actataaaat gtcggtggaa aaagcctact
    24421 ctacagactc gaatatgtta ggtgcaaccc acgaagcgaa agatttagaa gaattaagca
    24481 ccggtatgaa gatcgtaaaa ccgattatgg gcgtggcatt ctgggacgaa tcagttgaaa
    24541 ttaaagcgga aactgtttct gttacctttg aagaaggtgt gccggtggcg ttaaacggta
    24601 aacgtattga tgatgccgtt gaattaatta tggaggctaa ccgcattggt ggcagacatg
    24661 gtttgggaat gtcagaccaa atcgaaaacc gtattatcga agcgaaatct cgtggtattt
    24721 atgaagcacc gggaatggca ttattacaca tcgcttacga gcgtttagtt accggtattc
    24781 acaacgaaga tacgattgag caatatcgca ttaacggatt acgtttaggg cgtttattgt
    24841 atcaaggccg ctggtttgac ccgcaagctt taatgttgcg tgaaacggct caacgttggg
    24901 tggcaaaagc gattaccggt acggtcacgc ttgagttacg ccgtggtaac gatttcacta
    24961 ttcttaacac tgaatcgcca aacttaacct acgaagcaga acgtttaagt atggaaaaag
    25021 tagaagatgc accgtttacg ccggcagatc gtatcggtca attaacaatg cgtaacttag
    25081 atattgtcga tacccgtggt aaattagcag tttataccga tgcaggttta ttggcggcta
    25141 ataatagcgt gattccacaa cttggaaaaa aataatcagt tgatctccat tctgataact
    25201 tttagaattt agcctaaaag ctgccccaaa gttaatgctt tggggctttt attttcaaag
    25261 cgtgatgatg aaattagttg aaatttttac agacggttct tgtttaggca accccggcaa
    25321 aggggggatt ggtattttgc tgcgttataa cgggtacgaa aaaaccgtga gcaaaggcta
    25381 ttttcaaacc accaataacc gaatggaatt gcgggcggtg attgaggctt tagcaatgct
    25441 aaaagagcct tgtaaggtgc aactcaatag tgacagccaa tatatgaaaa acgggatcca
    25501 aaaatggatt tttaactgga agaaaaatga ctggaaaacc agcgataaaa agccagttaa
    25561 aaataaagat ttatgggttg ctttagacca agaaattcaa cgccaccaaa ttgaatggag
    25621 ttgggtgaaa gggcattcag gacatcgtga aaatgagatt tgcgatgagc tggctaaaca
    25681 aggagcaaat aatccaacgt tggacgatgt tggttatatt gcagactagg ttttacaagc
    25741 ggtcggattg tgtaaatttt ttaccgaatt taaccgcttg tatttgcata aagcacttat
    25801 ttttagcgaa atagtgctac gcaaacgttt tctttttttg tagaatagga gagctttacg
    25861 ctttaaggtg tgttatggtt gatttaattg ttatcggaat cattgctttt tcagtgctta
    25921 tcagtttatg gcgaggtttt accaatgaag cattatcgct acttggttgg gtaatcgcct
    25981 tttttgtggc aagctcgttt tatccttatt taagcggtta tctcacacaa attaattcgg
    26041 tttatttgca aaattcagaa tttttacgca atggtattgc agcggcgatt ctgttcattt
    26101 tgactttaat tgtttgtggt gtgatcaacg gtttattagg caaagtgatt gatttgagcg
    26161 gaatgtctat caccgaccgt attttaggcg gtgcttttgg ggcattgcgt ggtattttaa
    26221 ttgtgtcggc tattttattt ttcttagata cctttaccca agcaagccaa acggaattat
    26281 ggaaatcatc gctattaatt ccgcattttg actttattgt gaagtggttc tttgaacagt
    26341 tacaagcaaa ttccagtttt ttaaacacga ctaaataaag aggtttttct atatgtgcgg
    26401 cattgtcggt attattggga attcgccggt gaatcaggcg atttatgatg gtttaacatt
    26461 acttcaacac cgaggacaag atgccgcagg tatcgtcacc atagacgatg aaaatcgttt
    26521 ccgcttacgc aaagctaacg gcttagtcag cgatgttttc cagcaagagc atatggtgag
    26581 attacaaggc aatgttggaa ttggtcacgt tcgctaccca acagcaggta gctcaagtgt
    26641 gtctgaagcc cagccatttt atgtcaattc acctttcggt attaccttag ttcacaacgg
    26701 taatttaact aataatgcgg aacttaaagc tcgcttatac aacgaagccc gccgccatgt
    26761 gaacactaat tctgattctg aatcccttct taatattttt gcttactttt tagatctcta
    26821 ttccactcag catttaagcc cagacaatat ctttgaaacg gttcgtaaaa ccaatgatag
    26881 cattcgtggt gcttatgctt gcattgcgat gattatcgga cacggtatgg ttgctttccg
    26941 tgacccattc ggtattcgcc cgttagtgct gggtaaacgt gaaatcgagg gtaaaaccga
    27001 atatatgttt gcttcggaaa gtgtggctct tgatgtagtg gggtttgaat ttgtgcgaga
    27061 tgtgctgccg ggtgaagcga tttatgttac ctttgatggg caattacatt cgcaaatttg
    27121 tgccgataat ccaaaactga atccttgtat ttttgaatat gtttattttg cccgtcctga
    27181 ttccgtcatt gatggcgttt ctgtatattc tgcacgagtg catatgggcg aattattagg
    27241 tgagaaaatt aaacgtgaat ggggacgaat tatcgatgat attgatgtgg tgatcccgat
    27301 tcctgaaacc tcaaatgata ttgcggtacg tattgctaat atgttgtata aaccctatcg
    27361 tcaagggttt gttaaaaacc gctatgtagc tcgaactttt attatgccgg ggcaagcaca
    27421 gcgtaaaagc tcggttcgcc gtaaattaaa tgcgattgcc tctgaattta aaggcaaaag
    27481 cgtgttactg gttgatgatt ctattgtacg aggtacaacg tctgaacaaa tcgtggaaat
    27541 ggcacgagca gctggtgcaa aacgggttta ttttgcctct gccgcaccgg aaattcgcta
    27601 cccgaatgtg tatggcattg atatgccgac ttgtgaagaa ttagtggctt atgatcgctc
    27661 agtggaagag gttgcacaga tgataggggt ggataaattg attttccaag accttgaagc
    27721 actttataag tctattcaac tggaaaatcc gactattcat cgctttgatg actctgtatt
    27781 tacaggagaa tatattacag gtgatgtaga taaatgctat ttagacagta tagcaagatc
    27841 tcgaaacgat aaagcaaaag cagaggcggc aaaacaagcc accaatttag aaattcataa
    27901 cgaaagataa aagaaactcg cagtgaaaac tgcgagtttt ttactattga tttttcttag
    27961 tgagtgcatt ttccatactt ttataaatct ctttatatct aggtttaaat gtatcgcatt
    28021 tttcgggatc tacatttgct ttttggtgat ttaaacgaga atgcagtaaa tggaaatact
    28081 cggtagaaag cgtatcattt tgcatcagtt tctgattttc ctctccgagc aactctttta
    28141 gaagctgata ttcaaaatat tgcatcgtta aattttcagc cagattccaa tttgcgtaga
    28201 tttgctggta accgggttta gctaactcag gatagataca ttgctcaata ttattgagct
    28261 ggcgtatcaa aattctgaca tctatttctg agattttata tttaggctca gttgaagcgg
    28321 ttatattttg caaattattt gcaagcacgg cgctcggtag aagtaagaat atggcagata
    28381 gtttttttaa catagttacc ctgtattaat ttaataccca aacacggccg taatgtttca
    28441 ttaaacctgc gatatggcct gctttatcgc caatcccttg atataaatcg aagtgatggc
    28501 ctttcactgc accgccaaca tcaagagcca ccattaaacg catttcgtgt ttgccggtcc
    28561 aatttccttt gctatcaatc aacggcattt cgaccaacaa cacgctacct gatggcacaa
    28621 tgctacgatc tgatgcaaca gatgcaagtg gtactaacgg cacaccggca gagcctttta
    28681 cctgaccggt aggatcgttt ttaaagaaaa catacgatgg attacgctcc aacaaacctt
    28741 gaacacggct agggttacgt tgcccccatt cacggatagc ctgcactgac attttctctt
    28801 tcggaatttc gccatcttct actaataaac gcccaacgct ggcatattta aagccatttt
    28861 gccctgcata agcaaaatag tttaagcgac catcaccaaa gtcaacgtaa ccgctacctt
    28921 gaacacctaa taagaagtta tcgagcattg aattactata agccagttct aagccctgac
    28981 cttgcaatgc tcctgcgtaa atttccgccc gtgaaaaacg tttgctagac ggcatcgcat
    29041 aaatcgggtg ttggtattgc ccctgaggcg ttctacgggc tttgataacc ggcgagtaat
    29101 accctgtcat taacacattc tggtagccat cttcgccacg cattaaacga gtactaatac
    29161 catattttgc taaatcatta atattaccgc ccgatgagat ccaacgactg atttttccgt
    29221 aagcgatagc ataagaatct gccaagctac tataggctct gacattagaa agctgctgta
    29281 aaaagtctag ttgattaaca ggagcagcat ttaatcctaa acgtccagct tgaaaatgtg
    29341 tgccataagg cataaagtga cgaccattat attttgctcc aaatttagct ttttccgcat
    29401 cataagaggt tgttttgcct ttttggcctg aagacgaaca cgccactaat accgttgcaa
    29461 tcgctaccac gctagctgcc gcaatagctt ttttatatgc tttccaattc atcgaatatc
    29521 cttatatcgt taataaaatg tgaaaaataa acagaagaat agcaaaaaca gcgacaaaat
    29581 aaaaccagaa tataatttga ttgtttttac aacaataagc gtattttgat actatatctg
    29641 ttgtaattta catcacttag agcaattttg tatgatttta cttgtcatta tgtcaaattg
    29701 atatattata gcctcatcag acgcggggtg gagcagcttg gtagctcgtc gggctcataa
    29761 cccgaaggtc gctggttcaa atccggcccc cgcaaccaca ttccaaaccc tcgatagtga
    29821 atcacatcga gggttttcgt tttatttgcc aaaaaacagc aaaaaataac cgcttgttga
    29881 ctgcaaaagc ttcctctcgc tttcatttct cgttacactt ctactacatt tacgcttttt
    29941 tgattattat gagcaatatt ttaactgtta cccaactcaa ctattccgtc cgccatttgc
    30001 tcgaaatgga aatgagccat atttggctaa ccggcgaaat ctcaaatttc agccaaccag
    30061 tttcggggca ttggtatctc actttaaaag atgacaaagc acaagtgcgt tgtgcgatgt
    30121 ttaaaatgaa aaatgtaaga gtgaattttc gcccacaaaa cggtatgcag gtgctggtgc
    30181 gggcaagtgt tacactctat gagccacgag gtgactatca gctcattatt gagagtatgc
    30241 aaccggcggg cgaaggcttg ttacagcagc aatttgagca acttaaagca aaactttcag
    30301 ctcaaggctt gtttgctcaa gagcataaaa agccaattcc tacttttgtt aaaaccgttg
    30361 gtattattac ctcctcaagc ggagccgcat tacaagatat tttacatatt ttgcaacgac
    30421 gagatccgag cttatcagtg gttatttacc cggctctcgt gcaaggcaaa gaagcaacgc
    30481 aagatattgt gaatatgatt gaactggcaa accgccgcaa tgagtgtgat gtattaattg
    30541 tcgggcgagg tggcggttca ttagaggatt tatggtgttt caacgaagag agtgtcgctt
    30601 atgccattta tcattcacaa atcccgatta tcagtgcggt gggacacgaa accgatgtga
    30661 ccattgctga ttttgttgca gatttgcgcg caccaacgcc ttcggctgct gcggaattag
    30721 tcagcagaga tcaaaatgaa ttgaaacgcc aattacaaca tcagtttgat aaagtgaatt
    30781 tagcctttga ccgagtttgg aaccataaat ttaaccgttt ccaacaactc cccttacgcc
    30841 tgaatgctca gcatccaagc aaacaaattc aatcgcaaca gcaacgtttt gattatatgg
    30901 aataccgcct cgagcaggca atttatgcac ttgttgcagc caaaaagcag gtggggaaag
    30961 agctaaatgt ccgtttaatt caccaacatc cgcaaaagca gattgaacgc caatcccaaa
    31021 tgcttaagca attggagctg aaactccatt ggcaaatgga gcagcaactc agcaaaaaac
    31081 agcaaaaatg gaaaaacatt acgcaacggt ttgaacgcaa cccgctacct tatcaacttt
    31141 atcagcaaca aacgatggtg gcaaaaatgt cgcaacgctt ggcttattct atcgaaaaaa
    31201 taatgctgaa agagcagcga cattttcaag agttatgcac taaacttgat ggacttagcc
    31261 cattgaaaat cttgaccaga ggctactcaa ttacccaaac taaagacggt aaaacgctta
    31321 cttcaacaga aaatattgaa cgtggtgagg ctattatcac ccaactaaaa acaggaaaaa
    31381 taataagtca agtagtggat tttttgtagg ggaaattttg aacgctgcca atttttaaaa
    31441 ttatttatag taaaatcagt aggttaaata tttataaaca gggttgttca cttagttatc
    31501 cacaggtgat gtgcataact atttttgtaa agatgaattg agtgctgatt tttaaatcaa
    31561 ccgatttcaa aaggcatttt tacgcttgca caagcggtca tatttcccta taatcgtgca
    31621 aaaattaagc cagtgtggcg aaatcggtag acgcagcgga ttcaaaatct tatgcgtaaa
    31681 ctgataggac atacaggcga ttgaataaaa agcactctta gcctgagtga tgaaattggt
    31741 agacatgacg gattcaaaat ccgttggtga ataaccgtgt cggttcgagt ccgacctcag
    31801 gcaccatttg aatcacactt gtagtttctc tctttcaaat aatcaattca aatacaccgt
    31861 attaatggcc aatactcctt aacccttgtt aagagagtaa attatgaaac cattacaaaa
    31921 cggtacaaac aaacctttta ccattactat tgcttcaact aaaggtggct ctgccaagag
    31981 tacgaatgct gctaacattg gtgcattctg tgcagaacac ggtctaagaa cccttcttat
    32041 tgataccgat acccaaccca cattaagctc ttattatgag ttggaatatc aagctcccgg
    32101 tggaacttac gaatttctgc attttaaaga tgtagatcct acccacatta tttctagaac
    32161 gactatccca aatcttgact tgatccagtc taatgacccg tcaaataaaa tcagcccaat
    32221 gctgagagat tcacctgacg gtgcattacg ttttagttta ctgctccaga aaattgaagg
    32281 ttacgatgtc atcattattg acactcgtgg taccagagat attactgtcg atatgtctgt
    32341 attggcagca gatgttttat tctgtcctat tcttccccac attttatctg ctaaggagtt
    32401 tattcgtggc acgattggaa tgtatcaaga cctcgaaacc tttacggcat ttggctttac
    32461 cctaccaccg ctgaaagcga tgattaactg tgttgatcac actaaagatg tcaaattggt
    32521 ttccgactac cttcatactc tcttccaaaa tgagtttgat gaaaacaaaa cattgctgga
    32581 attttcggta cctgaccgcg tggcatatcg tgaagcggca actttttcaa aaccggtcta
    32641 tcgtcagagc caagctgaat atgaaacgat cagtcagctt tgtgcgttac tgatgccaca
    32701 gtttgcaaac tctcacttct cagcatagag ggagaatgta tgtctagctt aaataaatca
    32761 cttgtacagc cgcattctat agaggctgaa ttttcagtaa tcggtggatt actcttggat
    32821 aatgaactct ttgatgaagt gagtagcaaa atcaatgagg gggattttta taattttact
    32881 caccgtctac tgtttaagca tatttccgaa ttgattgaag ccggtaaacc agcagatata
    32941 ttgacattgg atcaatacct tacccagaaa aaagtgatcg aggatttggg cggatttgct
    33001 tatcttgcag aaatagtcaa aaacactcca tctacagcta atatccacgc ttatacggat
    33061 atcgttctct tatatagtaa acagcgacag cttttaaaac tggggcagtt tattgttgat
    33121 cagacacaga gtgcgaaaac gccagataag tttgaagctg ttgttgatga cattgagaaa
    33181 aaaattactg agtttagcct atcagataat acaaaatctg cagcagattt aagtgatatt
    33241 tttgccaata tgctctctcg tatggaactc tcggctaaaa atggagatcc tgtgacaggt
    33301 actccaactg gtattcaagg tattgacgaa gcgacaacag gtggacagcc aggcgattta
    33361 atcgtgattg gtgcccgccc ttctatggga aaaaccgcat tttctcaaac tatcgcttac
    33421 catacactta aaaaattcga gtcggctcct gtgttctatc acagcatgga aatgccggca
    33481 gatcagattt tacaacgttt tctagctatg cgtgccagag tgggattgca aaatattaga
    33541 caggcagaca gtttggatga tgaggaatgg tcaaaactaa cctcagcaat gggctatatc
    33601 ctagaacatt ggaaaaatcg tttagttatt gatgatgaag gtagtctcac gcctcaaaaa
    33661 ttacgcacta aagttcgaca aaatgctcgt aaatatggca aaccggcagc tattttcatt
    33721 gattacattc agttaatgca aacctcgcaa cgttatgaaa atcgcaattt agaaattgcc
    33781 aacatctctc gttcactcaa attactggca aaagagatgg attgtccggt ttatgccctc
    33841 tctcagctga accggtctgt ggaacaacgt gccaataaac gcccgatcaa ctctgattta
    33901 cgggaatccg gctcacttga gcaagatgcc gatgtcattt tattcatcta ccgagatgaa
    33961 gtttatgatg cggattctcc gtttaaaggc actgctgaaa tcattatcgg caagcaaaga
    34021 aacggaccac ttacttccgt aatgacgaat ttcagaagtg aatttgccct atttgaaaac
    34081 agaacaaaca caacgcatta ggatagatta tgacaaaaga tgaaaaaaga ctggcagcga
    34141 tagcaaaagg attaaatgtt tcacctattt caaatacggc tccatcctac caaacagcca
    34201 caccaacgca ttacagtagc gatgttgaat atattacagt aacgctggat aagttgcgtc
    34261 cgtatgagca taaccctcgg aaaacccgta accctaactt tgagatgatc aaagagtcta
    34321 ttcgtcgtcg agggttagat cataagccga atatcacccg tcgtccggga gaagatttct
    34381 atattatcgc tgacggtggt aatactcgta ttcaggcact caaggagctc tttaccgaga
    34441 ccaaagatcc aaaattttgg tccatcagtt gtcaatataa accttggcaa ggtgatactg
    34501 ccgacagtgt cgaagctgaa ctcaatttac ttatcgggca tttgattgaa aatgataccc
    34561 gtgcggattt gtcatttatt gaaaaagcat tggggatttt gcaggcgaag gagtattacg
    34621 agaaaaaatt aggtaagtct ctttcttcga gagagttatc ttctgagtta gaaaatgatg
    34681 gatatattat ctctcatgct ctcattctta aaatggaacg ttgtgttaat tacttatatc
    34741 cacatatacc agaagttctt tttagtggtc ttggtcatac acagatcgat aaactattag
    34801 ctattcgtaa taatgctgaa gaggtatggg cagcccatca atttgatact gatgttactt
    34861 ttgaatcgct ctggtcagaa aatttatcca aatttaatga ggctacacca tttcaagcaa
    34921 aagaattcca aagtgaattg attacggcaa tggttgaagc tttagagggt aaagtgagtt
    34981 ttgaaacact ttatctggat attgacttag atgaacaaaa attcaaaaaa atagcggcta
    35041 aacaacaaga aattgataat ttagttgaaa aaacagtcga tcaaatcaat accagacagg
    35101 aacaacaaac tgcaaaatct gaacctctca tcaaaaatga aaataaagcc gttactcccc
    35161 aaaaagctca acatattatt gatgaggtaa ttgatgataa cgaaagtgat gatgagcaga
    35221 ataacgctat tactgattta tctcagcttg gctcttcatt gctcgataac caagataatc
    35281 aagaagatta tctatcccaa attgcccata actttggact cactccggga atgagtattc
    35341 aagaacagcg agagcaacga gctgaagcga atggactgac ttttgcttgt gaaggtcgcc
    35401 aaccggttga agatatttgg ttgattcacc ccgcacgtca atatcgctca gaggcctact
    35461 cactggcctt agatattgcc gaaagtatgg gcattgacca tctggttgaa catattgtga
    35521 aacaaccagt ggattacact tatgcaatga aaccggcaga tactgaactt tcaccgtctg
    35581 ctttaacact ctactcattc ctctcaatgt tacagactgc tgaacataaa gatgaaaata
    35641 gctgtgtctt agattccaaa ttcctgtttg agcttgatga tcttacctta gtcaaaattt
    35701 tccgtctcat tcgggtcagt cgccatattc gccaacaagg aggagaaaat gattaagccg
    35761 attaccgtaa atgaagcatt gattggtaac gccctgctca atattaaaga gggaaatatc
    35821 catccttgtc taaaaatggg attttctgag gagcaactaa aagcgatcaa taatctcagt
    35881 attgatgaaa ttatggatat tagcaactcc gttgtctctt ttgctaaggt ggagattaat
    35941 cacgaaacct tttggaaatt actggctatt gcacaagcca atactcaaca gcgacaaatt
    36001 attgaccgag cattattgct cggagcctct attgaaatgt tgcaccagta ttttggttta
    36061 tcaacctctg aagtctcggc tcgccgtcaa ttactcggta tcgaagaaaa aatgggacga
    36121 aaagcggcag caagtgatga agaatctacc catatttggg aaatttggca aagatacaaa
    36181 caacgaatgg aaatcctaga ttcacaagaa ggattagagc ttctatgtct gattgctgag
    36241 gaaggcaata tgaatctaac ggttgtttgg aaactggttt ccgaatggta ttcaaaacat
    36301 aagtaaaaaa taaatgcccc gaagttggag ctttggggca ttcgatattg agtcttgtat
    36361 ctctatctta tgaattacaa ggactttgca gaagtcccgt gcattatagc cataggagag
    36421 agaatagcaa gagaaaaact cttttatcct ggtggagaga aacaatgttt agcagcacga
    36481 ataagccaac agagcatgga ttgctatttt ttggcaacca acacgaaaca gtccctactc
    36541 gattattaca agatccctgc cttacaccaa gagcaaagtt tgcttggcag ctcattaagt
    36601 gcaatgttca agcctttcaa ggaggattat ttccctctta tgagacgctc agcaaaatgt
    36661 tatccgatag accttatgcg gaggctaaat tatcggaaaa agtcgtgact caaacactct
    36721 atttactccg tcttactcgc tggcttactt tatgtgaaac agtgcgtgat gagcgaggtt
    36781 atgtacaagg taatgtttat atcctacatg atgaacctgt gccaatttta gatgcaattc
    36841 aattaaatag cgactatctc tcttttttag ataaatgcac caaacataaa gatagcctta
    36901 ttaatggtgt ggcaaatcat attgttgaaa gtctaataac agacaaaacc aaatggcact
    36961 atgtctctca tttagactgt ttacaaagtc gttatcagat ataccagcaa cagcagctgg
    37021 tgaaagataa acagccatcg caaacagaac aagaattaag caaaattcaa caaaacatcc
    37081 taacttccac tatggaagtt agggattttg atgaggaagt caggaaaaaa tcctctaaaa
    37141 accagacttc caataaggga gttagggcta aaaatgaaga taagtcattg attttagact
    37201 tacttccatt agggaagtca gatgtacagt accgtacttt atatattaat aagtactgta
    37261 ctggggaacc gagcgaaatt acttggccac aagaaatccc attaacttca cttgaacaaa
    37321 aacttactgc acaggcaatg aagggattag acctcggttt atgccaagct attttgttgg
    37381 aagtacaaca acgcattatt caaaagcagg atgtgaaaaa accgaaaggt tatctctata
    37441 cgcttatcca gcgggcgaag cagggtgaat ttaaacccta ctattttgaa ttaggaaaaa
    37501 atcttccctc acagaatcag gctaacaata attctgctca ttctatacaa aaactgactg
    37561 agcagcctac tgagaaaccg gtcttaactt cagcagacag agagcaaatg gctagtcgta
    37621 tgcagaagtt tagagctgaa ttacttttac aataagatta aaaaacaatc actgttaagg
    37681 ggcttaatag tgagtgaaaa ataatcagtg tgtaccaggt acacaatgga taaaaaataa
    37741 acagcgtagg cagtgtctgc aaagattaaa aaacagacaa tggaaagccc ctttccaaag
    37801 actaaaaaat aatcaaataa acaaggagca tatatgacca ctcaattaga tcctcaactt
    37861 ggtccacttc gtagtgagat cacttttacg ttacataccc aatatgccca taaattatgg
    37921 gtggggcgac caatgattcg taatgaggaa ggcaaagtaa ctcaatcctc cattatcagc
    37981 gtaccaaatt gctttgcaat gctaacccaa attcaacggg ctgcatcaga agatgatcct
    38041 tatgctgacg attatctgat tcaatttgaa gaaagtgtga tcaattatcg gaaggaaatc
    38101 caaaagctca ccaacgacat tgtcacgctc tacgccaaaa tgttgccgga gggaatttct
    38161 attgaacgct gtgccaatat ttccccgatt tcttacccga tttatgttaa ttcacagcta
    38221 gggtatcaat tactctactt acttggtgat tttgatagcc tttgccgttc agtaatgacg
    38281 gcagctcata ttgcgattat caatcgtgca gaagctcaag attggattga agctggtgca
    38341 aggttaatcc ggaaatgttt tgggatcgtt gagcgttata agagttcagg aatcactcgt
    38401 cgggactatc aagaaaagaa tgctcgctat caagctgcga taaaacgaat gggctataca
    38461 ctctcagatg ctgtacttac cggtgagcat cgtgctgagt ttgctccctt catcaagcaa
    38521 aacactactg ttgaagaaga gcaatccgta gaaacccata tcacggcaca gacaaatgaa
    38581 tctcaaaaat aaggagtgat atgaacctca tctctgatga aatttatcgg caattagtca
    38641 aagattctgg gctgaatact tctctgaaac agctatttag ccattttgac actggctcag
    38701 actatgaact tttgcaagaa cagttcactc aagctcgggc ttattttatg gctgcacagg
    38761 atagtatggt gcagtctgtg cggcaggatc tttcaccttt ggctgtttat atgattaagg
    38821 ataaggcctc atcctcaggc ggtacatttt tacgctggcg tagtatgcaa aatgccagaa
    38881 ccggtggcac agtttggcag ccgattgtag atgataagtc tgtcccagtg gaggtgagga
    38941 aaaaagttgt cgcagtagaa aaagacagga ttttgattaa tatgcagatt tcggtgttta
    39001 atcatatttt gcgacagttg gcagattgtg ctgaaaagtt gaaagaggta gataatgccg
    39061 ttgcgaaatc agacttaaat tcgtagtaaa tttatatata acaactccta tattggttgt
    39121 gtgtaaacgc caaccacggt gggctgacgt ggtaaaacaa acagtccgtt aattaggaca
    39181 tattcaagtt tgtaatacct gaaaatccgg tttgtaatcc ctgaaaaagt gcagtttgta
    39241 aatcctgcat taaaaggcct tttaaaggta agggtacaag ccccttacct tcacgaagaa
    39301 aaagccttta caacggagga ataagtgatt gcacacgtaa aaatgaaaaa ttcactctaa
    39361 ccaaatttta attaaatact tttttcttag gctgaatcaa gtttaataga actaacttaa
    39421 tttattgaag gagtaaatac gatggcagga atcaataaag tgattattgt cggtaatctt
    39481 ggcaacgatc ctgaaatgcg gactatgcct aatggtgaag cagttgctaa tattagtgtg
    39541 gcaacttctg aaagttggac ggataaaaat accggagaac gtcgagaagt cactgaatgg
    39601 catcgtatcg ttttttatcg ccgttatgct gaaatttgtg gtcagtacct acgtaaaggc
    39661 tctaaaattt atatcgaagg aaaattacgg acacgtaagt ggcaagacca aaacgggcaa
    39721 gagcgttata caaccgaaat ccaaggtgaa ctattacaaa tgttagatag ccgtaatgct
    39781 acaaatagcg tagatggaca acaatctaac tatcaagcta tgagccaatc tccaaaagca
    39841 acacatccac aagatttacc aatggataac tttgatgatg atattccgtt ctgagttaca
    39901 tataatttaa aactgtaaaa taaaacccat ataaatatag agaacccttt attttaaaag
    39961 ggttctcttt ttttacatta atttcgacac aacatcttta atttgatagt atttatatat
    40021 gatattttgg gtatccggat ttagcggttg atctgcgcta gacgtaattt tgtaaataaa
    40081 ccggatttta gggttgacgg aaaaggccag atgccctaat attagattca agagctgaga
    40141 acaacggctc gggcataagc ccaacgggcg caccgccgaa cttggtgcag gatagaagcc
    40201 atgtcatacg atgcaaatga tgcgctgaat gaaatcgaag aggcgcttag cgagcttgaa
    40261 agggttgctg aagacctaat caacaacaac ccgaataaag aatcagaatt acgcggccaa
    40321 ggggttcacc aagcgacaaa gcacctccgt tttcgtattc gcaacatccg ccgcggcgaa
    40381 gcaatttgac taacatgccg ccctaggggc ggctttcagc gaggtcagca tgaaaatcaa
    40441 actctatttt ccggacgagt ctatcgccac gataaagcga atggggcttc gccaaatgtc
    40501 tcccgagact ctcaggtgga ctgccgatca tccgtcaagc agctatggta tgggcgcttt
    40561 gctcagaggc aagtctggtg aaatccttga tgggaagtct tttgctgcaa tggtgcatgc
    40621 ctttggcgcg tggattgaaa cagacagtga agataccagt cgtcgagttc ataacgcgct
    40681 agtcactgct gccactggca ccgaggaatc ggttaaggtg gcaaaggagt aatgtcgaat
    40741 atcctcaact ggcctgatta caaagtgctc caggtatccg aactggagca cgattaccag
    40801 gtacacgccg aagtttccga accgcctacg cagtgccccc actgcaatca tcctgaaatc
    40861 gtcggctttg gtcgccgtga tgaggtgatc atggatacac ccgtccacgg aaggcgtacc
    40921 ggcatcatgc ttaaccgccg tcgctatcgc tgccagtctt gccgaaagac gtttctggag
    40981 cctgtaccgc acaaagacga aaagcggcag atgaccaacc gcctgatcca gtacatcgag
    41041 cgcgagagcc tgcgccgcac gttctccagt gttgccgagg atgtgggcgt cgatgaaaag
    41101 accgtccgta acattttcaa cgactattgt gaacgcctcg aaaagacgct caattttgaa
    41161 atgccgcagt ggttgggtat cgacgaaatc cacatcatca aaccccgctg cgtgatcacc
    41221 aacattcagc agcagaccat tgtggacatg ctggataacc gcaataaaac caccgtcacc
    41281 cgctacctga gcaaacgcac tgaccgcgac ctggtgcgct acgtggcaat ggatatgtgg
    41341 aggccgtacc ggcaagcagt agaaaccatg attcctgacg ccacggtgat catcgacaag
    41401 ttccacgttg tcaggatggc gaacgaatca ctggaacgcg ccagaaaagc catcagaagc
    41461 gccctgacgc cacagcagcg ccgtgggttg atgcgagata ggtttgtcct actgaaacgc
    41521 cgtcacgagc tgacagatgc cgaatacatg cgtttttcag gctggacatt gaattaccct
    41581 gagattggcc aagcctacga actgaaagaa gcctttttcg agatttggga ctgtcagacc
    41641 cggcaccagg cacaggaggc atattactct tggctgcgac agattacgcc ggaaatgaaa
    41701 gcccactatg acccgcttat caaagcgatg ggcaactggc acgatgacat tttcgcttac
    41761 ttcgaccacc ccattaccaa cgcctacacc gagtcactga acaacctgat tcgtgttgtt
    41821 aatcgtgttg gccgtggcta cagctttgaa gcgctgcgag ccaagatcct gtttactgag
    41881 ggcttccaga agatcaagaa gccacgctat cagcgtcaac ggatacccga gggcgctatg
    41941 ggcaggatgc cgttctatgg cgttgccgaa gcggggccat ccactaacta cggcgctgac
    42001 atatcaacac tggtgcggga gattgaggcg gggcgtttat agccctgttt caaccctgta
    42061 atccggatac ccaaataaag tcctatcaac gttattaaga gcggacagga cttttatgat
    42121 ctttataatt tctagtatta aggggttgaa ataacagctt taggtgtggt ttttctttgg
    42181 tgaaaataag cggtaataag caacatagca taaagtattg cccccatcag ccataacaga
    42241 ccatcccaat aagcgacgct ataactataa ataaaggcaa ataaaagggg accaatgatc
    42301 ccggtaatat tggttaggct caccagagta ccttgtaatt tcccttgcgc attatcatcg
    42361 acagattttg ataaataacc ttgtaatgcg ggttgcccca tacctcctgc cgctaagcaa
    42421 attaatgctg gtaagatgac ccaaacgtgg cctatccacg ctaataataa acagcccatc
    42481 atatcaatag acatactgat cataatggtg gttttttcgc cccatttttg tgccaatttc
    42541 ccagcgacaa tcgcctgaaa gaaaatattt aatacaccca gaaccgccaa agacataccg
    42601 atagaagttg tgttccaatc aaaacgatat tgtgtaaaca gcacccagat ggtggcagga
    42661 atttgcccga taagctggat aataaaatag gttgctaacc aaaagtagag gcttttctta
    42721 aaaaaaacag tgactgtatt tgaggcagtt tggttttcag gtgtcctatt ggcaacaagc
    42781 gcttctcttt tttgtgtttc tcggaaaaag agcaaagaga gtattaataa tatcgagtgt
    42841 gaaatagcgg caaaaataaa tggcatatga gcactgatat cacctaataa tccccctagc
    42901 attgggccga taataaggcc aacaccaaaa gcaccaccta agaaaccaaa atagcgagtt
    42961 cgatttttag cgggagtcac atcactcatc gctgatgcac atacggcacc tgttgcgcct
    43021 gtgatccccg caatgatgcg cccaatatag agcatccaaa gtgtggttga gaatgccatt
    43081 aaaagatagt cgagtgccgc gcctaaaagg gaaaacagca agatgggttt tctgccgtat
    43141 ttatcagaca gtcgtcctag aataggagca aaaataacct gcatggtagc atagagcgct
    43201 aatagcacac cgtaatgggt tgccagtgaa ttttcactga caaattcatt taatagagta
    43261 gggagtactg gcatgataag cccgatacca atggcatcta atacggtgat cagcagtata
    43321 ataataattg atttattcat tgagatccta aaaatctatc agtgatagag tgggtgtaat
    43381 atatct
//
LOCUS       DANMBQ010000008        42181 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.008, whole genome shotgun sequence.
ACCESSION   DANMBQ010000008 DANMBQ010000000
VERSION     DANMBQ010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 42181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42181
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.008"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            347..643
                     /locus_tag="PXE92_000385"
     CDS             347..643
                     /locus_tag="PXE92_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL5759674.1"
                     /translation="MTAITIPQFEEVTSKQFQSEFGRIVDIVKGKTPVAITQYGRPTM
                     VLFPYDQAVEARRLLAKQRLLEMLAERDKNPPAALAEITLEELDKMIDEERNAL"
     gene            633..1049
                     /locus_tag="PXE92_000386"
     CDS             633..1049
                     /locus_tag="PXE92_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxin-antitoxin system toxin component,
                     PIN family"
                     /protein_id="HDL5759675.1"
                     /translation="MHSDYLVIDTNILISGLLFPKSNPNLAVKKALLGYTICVSQATF
                     DEFLEVSARPKFAKYFSIQEREEFIANLLDAVKFVEIKETITDCQDPKDNKFLEVAIS
                     AKAKYLVTGDKKDLLSMNPYRNVEIISVSEFLAETR"
     gene            1049..2707
                     /locus_tag="PXE92_000387"
     CDS             1049..2707
                     /locus_tag="PXE92_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnD/SsuA/transferrin family substrate-binding
                     protein"
                     /protein_id="HDL5759676.1"
                     /translation="MKRFLTLFLLLFSSFSLAETHQIGILAQRGEAYTRTHWQPWVDW
                     LNSQFPNERFELVPLGINEASRRAELDFLLTNQAQFFYLSNQNVRWLATLNSPFSANG
                     EQGAVGSSIWVRADSHYQQLSDLKNQTISAVDNDAFGGFLLGLYQFHQAGMRQNRDFS
                     VQFSGFPVENALALLAEKQVEAAIVPVCLLEELEKEGKFKRSDFRLILQNPQAQGCLA
                     STPLLPNWSLAAMENVPNELAVQLATRLLNSHNPDLPRWTLPFSSAQADHILRELYRH
                     PQQKSLWATVLDWVRLNKFGLLAVVLFILLNLVALRYQVYRKSKALQQAHCKMQQYQQ
                     ELTRADRLALLGEMTTGFAHELKQPLSAVRMYAEGLKSQNSDPYQQRILDKLIAQVDR
                     AVKTMQSIRDWAQNRPSGEPQAVILNQLITNVIEFVAVENRQNAQISLIADRTFRLNL
                     HATVLEQVLTNCLLNALQAGASEISVRLQAVENGLEIAIEDNGGGFSPAQLEFPFVPF
                     RTDKPHGLGLGLVLCQRLMQSLNGRIVLANGENGAKVVLLLPQI"
     gene            2793..3450
                     /locus_tag="PXE92_000388"
                     /pseudo
     CDS             2793..3450
                     /locus_tag="PXE92_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249115.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
     gene            complement(3434..4372)
                     /gene="ttcA"
                     /locus_tag="PXE92_000389"
     CDS             complement(3434..4372)
                     /gene="ttcA"
                     /locus_tag="PXE92_000389"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HDL5759677.1"
                     /translation="MTDDIQKSDKKITYNFNKLQKRLRRNVGNAIADFGMIEEGDRVM
                     VCLSGGKDSYTLLDILLNLQQSAPVNFSVVAVNLDQKQPGFPEEVLPRYLESIGVEYK
                     IVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDMLATLF
                     LNMFYGGKMKSMPPKLISDDGKQIVIRPLAYCKEKDIIKYAEAKQFPIIPCNLCGSQP
                     NLQRQVVKEMLNTWDRQYPGRLETMFSALQDIVPSHLCDPKLFDFKGIKHGQTIEGIE
                     GDTAFDDVKIEAKTFLYEDDDNNFAEAGMIQFKEVN"
     gene            complement(4435..5148)
                     /gene="ubiG"
                     /locus_tag="PXE92_000390"
     CDS             complement(4435..5148)
                     /gene="ubiG"
                     /locus_tag="PXE92_000390"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HDL5759678.1"
                     /translation="MQNVDQQEITKFENMAKTWWDPNGSFKPIHLLNPLRLAYILEKS
                     NGLFGKKVLDVGCGGGILSEAMAKQGAIVTGIDMTSQPLEVAKQHAKESGLEIDYQQT
                     TIENFLAKMTACNQEKFDVITCMEMLEHVPDPLSIIQSCKALLKPDGVLFFSTINRTF
                     KAYMLVIIGAEYVLKMLPKGTHEFEKFIKPAELLAWCDQADLRCQEMRGYHFNPLTEK
                     FWLNNDVSCNYIATLKPNN"
     gene            5213..5593
                     /locus_tag="PXE92_000391"
     CDS             5213..5593
                     /locus_tag="PXE92_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine dimer DNA glycosylase/endonuclease V"
                     /protein_id="HDL5759679.1"
                     /translation="MTRINLVPPTELCDQHLLAEHRELTRIPNAVAKGKFSLKGQPED
                     YKLGEGHVRFFFNKLTFLKKRYDALHEECLARGFKVQYFWAEHLPQDPSLWLDYQPTE
                     TALTVNRERIALRMPANPRFSERK"
     gene            5690..8386
                     /gene="gyrA"
                     /locus_tag="PXE92_000392"
     CDS             5690..8386
                     /gene="gyrA"
                     /locus_tag="PXE92_000392"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HDL5759680.1"
                     /translation="MSELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLFSMDQNSNTYNKPHVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLP
                     TKIPALLVNGSSGIAVGMATNIPPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFP
                     TGAIINGRKGIEEAYRTGRGKVYVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKI
                     AELVKEKKIEGISKIDDYSDKKGISIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMV
                     ALDNGQPKVLNLRQIIEAFVKHRREVVTRRTIFELRKARERAHILEGLAIALANIDPV
                     IELIRASKTAEEAREGLLARPWALGNVAPMLEAAGVGASRPEDLPEHLGVRDGEYYLS
                     EAQARAILELRLHRLTGLEHEKIVEEYKELLTEIGELIHILTSPERLMEVIREELERV
                     KTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGK
                     SATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQLPQASRGARGTPIVNILPL
                     VKEENERITAILPIPNGEFSADKFIFMATASGVVKKVSLDAFSNVRASGLIALKLREG
                     DELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMGRTATGVRGIKLSTTEISSEEIE
                     EAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKS
                     RATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVR
                     IIRTAEDEQVVSLERVCEPEDDENESLDALENAETAETSTEE"
     gene            8481..10445
                     /locus_tag="PXE92_000393"
     CDS             8481..10445
                     /locus_tag="PXE92_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5759681.1"
                     /translation="MALINLSNAYLGFGDHPLLDHTELHIEPGERVCLVGRNGAGKST
                     LMKILAGEVQLDDGKLVFEKDIVVTRLEQDPPRHIEETVFDYVAEGIAHLADLLKQYH
                     HISLQMQTDYSDELLAKLSAVQSQLEHANGWQFENRIQDTLKLLELAPDKRLCELSGG
                     WVRRAALARALVADPDVLLLDEPTNHLDIEAIAWLENLLLDFKGSIIFISHDRAFIRK
                     MATRIVDLDRGKLVSYPSNYDKYLEEKAEDLRVEALQNELFDKKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKALREERRNRREVQGTAKIQIDNTARSGKIVFEVENAGYEIGGRTL
                     LKNFSTTILRGDKIALIGANGIGKTTLIKLLLGEIQPTSGSVRCGTKLEVAYFDQYRV
                     DLDPEKTVMDNVADGKQDVEVNGVKRHVLGYLQDFLFPPKRAMTPVKALSGGERNCLL
                     LAKLLLKPNNLLILDEPTNDLDVETLELLEEMLTDYQGTLIIVSHDRQFVDNTVTECY
                     FFEGEGVVNKYVGGYFDAKQQQENYFAATADKRLNSSKNLQKIEEKAPLAEQEKQKAD
                     QEKTKAEPTKKTKLSYKEQRELDELPAKMEQLEADIEALQAEVNSAEFFAKDPSYTNA
                     QLQKLADTEAALEQAFERWEALENIKNGNI"
     gene            10527..11285
                     /gene="tcdA"
                     /locus_tag="PXE92_000394"
     CDS             10527..11285
                     /gene="tcdA"
                     /locus_tag="PXE92_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HDL5759682.1"
                     /translation="MTERLDNYEQRFGGIGRLYTPEGLEKLRRSHICVIGIGGVGSWA
                     VEALARSGIGKITMIDMDDICVTNINRQIHAMSGTVAQLKTEAMKERIERINPECVVE
                     IIDDFLTQDNLADYLNRGYDYVIDAIDSLRVKAAMIAFCKRNKIKIITTGGAGGQTDP
                     TKIQITDLSKTVQDPLAARVRSLLRKEYGFSNKNKFGVECVSSTQQLIFPQMGEACEV
                     SATMNCANGFGAVTMVTATFGFFAVSRVIDKLLK"
     gene            11332..12699
                     /locus_tag="PXE92_000395"
     CDS             11332..12699
                     /locus_tag="PXE92_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LOG family protein"
                     /protein_id="HDL5759683.1"
                     /translation="MAIHRVNPKGSMEQLSHLEMELLAKNTQGNLHQLYRNCSLAVLN
                     SGVHTDDSRALLSQYPDFEIRLLTREKGVSLELHNPPETAFVDGKMILNIQYHLFAVL
                     RDIVFVNALKNAIRPLEETSLEALTTNTVFSILRNAKAIEMNTDPNLVVCWGGHSINE
                     TEYQYCRAVGQEFGLRELNIVTGCGAGVMEAPMKGAAIGHANQRYKNGRFIGITEPSI
                     IASEPPNPIVNELVIMPDIEKRLEAFVRLGHAIVVFPGGPGTLEELLYIIGIKLNPAN
                     HAQQLPLILTAPKESADYFYAIDQFIGETLGEEARSLYEIIIDDSVLVARKVKQAMIE
                     VKSSRYESGDAYNFNWSLKIEEDFITPFIPTHENMANLNLSLAQPKEQLAANLRRAFS
                     GIVAGNIKPETSDLIEKYGVFKLHGDRKLMEHIDKLLERFVVQHRMKIPTGEAYQPCY
                     EIVKG"
     gene            12719..14266
                     /locus_tag="PXE92_000396"
     CDS             12719..14266
                     /locus_tag="PXE92_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HDL5759684.1"
                     /translation="MYLKHIEISGFRGINHLSLQLRPNMVLIGENAWGKSSLIDALSL
                     IFNLEQALYQFQFKDFHIQYTDTPNQVRDIQLVFTFCEEHQHDLAVQFPAYLAQAAFY
                     IDNHRCVSLAVTGKLHGEQISTDYQFVDQSLKPIQIEQAENAIRQFIYHHPVYRLRDA
                     RLNNRVHNELLLKGSSQLEDDFQRELNALSSLLKYYFLTSQSRYLIKTSMQDTALWWE
                     KVKSLCLRLKQQPELVESAQQHISTLFLFNPRSTVIEKPIILFEDLNAQLHPRMIAIF
                     WELLGFLPSQRITTTNSIELLSQVPLREICRLVRHHDHTQAYWLERHSLGKEDLRKLT
                     FHIHHNRGLALFAKAWILVEGETEVWILQELARLLDIHLEMEGIKIVEFAQCGLRPLI
                     KYARAMGIEWYVLTDGDDSGKRYADTVKSMEEDFAHRLTMLPQKDIEHFFYKAGLRNV
                     FIQLANWRSQEKYPVSYIIKRAIQRSSKPDLAIALANEMGQRGEHSIPTLFKQLFADV
                     LALINKV"
     gene            14489..15523
                     /gene="metN"
                     /locus_tag="PXE92_000397"
     CDS             14489..15523
                     /gene="metN"
                     /locus_tag="PXE92_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HDL5759685.1"
                     /translation="MIQLKNISKQFEVKGKKITALDNVNLEVPRGTIYGVIGASGAGK
                     STLIRCVNLLERPTIGQVIVDGQDLTAMSDKELIHARRNIAMIFQHFNLLSSQTVFEN
                     VALSLRLSNTPKEQVEKKVNELLDLVGLTDRKDVYPANLSGGQKQRVAIARALASDPH
                     VLLCDEATSALDPATTQSILQLLKDINKRLGLTILLITHEMEVVKRICDRVAVIDKGQ
                     LIESGSVSEIFSNPKTELAQKFIQSTFHFELPQEYTEQLSSSPTEHSKPIIKFEFTGR
                     SVDAPLLSMASKKFGIDFSILMSQIDYAGGVKFGFVIAEVSGNPDSIAEAKFYLIDNN
                     VKVEVLGYVG"
     gene            15513..16190
                     /locus_tag="PXE92_000398"
     CDS             15513..16190
                     /locus_tag="PXE92_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5759686.1"
                     /translation="MWADFMQEMTPQMWSLVWESTFETVYMGFVATALAVVIGLPIGF
                     LAFLTGKGEILENPRLHQVLDVVINIGRSIPFIILLIILLPFTRLVVGTTLGTTAAIV
                     PLSVSAIPFFARLTSNALLEIPSGLTEAAKSMGATNWQVVTKFYLPESLPILINGITL
                     TLVALIGYSAMAGAVGGGGLGNLAISYGEHRNMVYVKWIATIIIVAIVMISQKLGDHL
                     AKRYDHR"
     gene            16213..17046
                     /locus_tag="PXE92_000399"
     CDS             16213..17046
                     /locus_tag="PXE92_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL5759687.1"
                     /translation="MSFKKILGVALVSALALTACKEEKKAESTAAPAAQAPAKIKVGV
                     MSGPEHTVAERAAQIAKEKYGLEVEFVLFNDYALPNTAVSKGDLDANAFQHKPYLDKD
                     SQSKGLNNLVIVGNTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNLARALILLEKQ
                     GLIKLKDNTNLFSTSVDIIENPKNLKIKEVDTSIAAKALDDVDLAVVNNTYAGQVGLN
                     TQDHGVFVESKDSPYVNIIVARQDNKDAANVQNFIKSYQTEEVYQEAQKHFKDGVVKG
                     W"
     gene            17129..17959
                     /locus_tag="PXE92_000400"
     CDS             17129..17959
                     /locus_tag="PXE92_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL5759688.1"
                     /translation="MNFKKLLGVALVSALALTACKDEKAQAPATTAKTENKAPLKVGV
                     MTGPEAQMTEVAVKIAKEKYGLDVELVQFTEYTQPNAALHSKDLDANAFQTVPYLEQE
                     VKDRGYKLAIIGNTLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHG
                     LLKLKDPKNVFATENDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSP
                     DKDGIIVESKDSPYVNLVVSREDNKDDPRLQTFVKSFQTEEVFQEALKLFNGGVVKGW
                     "
     gene            18011..18802
                     /gene="metQ"
                     /locus_tag="PXE92_000401"
     CDS             18011..18802
                     /gene="metQ"
                     /locus_tag="PXE92_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HDL5759689.1"
                     /translation="MKIMKLAGAVAIFSLFLTACNDKAEKLKVGVISGPEHKVMEVAA
                     KIAKEKYNRDVELVVFTDYATPNAALDKGDLDLNAFQHKPYLDNQIQEKGYKLVPVGN
                     TFVYPIAAYSKKIKSLAELKDGDTIAVPNDPTNLARALILLEKQDLIKLRADAGLKAT
                     SVDIIENPRKLVIQEIEAPLLPRTLDDVAFSIINTTYAGQNGLTPTKDGIFVEDKDSP
                     YVNLIVARENNQHSEAVKDLVKAYQTEEVYNKANEEFKGAMIKGW"
     gene            complement(18847..19998)
                     /gene="metK"
                     /locus_tag="PXE92_000402"
     CDS             complement(18847..19998)
                     /gene="metK"
                     /locus_tag="PXE92_000402"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDL5759690.1"
                     /translation="MAINLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACET
                     YVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPD
                     INQGVDRADPLEQGAGDQGIMFGYATNETEVLMPAPITYAHRLMEQQSKVRKSGKLDW
                     LRPDAKSQLTFAYENNKIIGIDAVVLSTQHAEHISQKELIEGVMEEIIKPVLPSEWLS
                     QNTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNEILVKLIYQNF
                     DLRPYGLIKMLDLIKPIYRETAAYGHFGRKHFPWEKTDKAEALRAGAGL"
     gene            complement(20181..21023)
                     /locus_tag="PXE92_000403"
     CDS             complement(20181..21023)
                     /locus_tag="PXE92_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HDL5759691.1"
                     /translation="MKVGLVLEGGGLRGIFTAGVLDVFLDEHIHIDGAIGVSAGALFG
                     VNLPSKQKGRALRYNKKYAKDKRYMGLHSLLTTGNIVNRDFAYYELPSKLDPFDQQAF
                     EDSGMDFWVTVTNVETGEPEYIKIDNVFEQMEAFRATSSMPIVSKIVEIEGKKYLDGG
                     VSDSIPVQKFIEMGYDKIIVVLTRPLEYRKKPSSMWLFKRFYKKYPKLVQRWENRYAE
                     YNQAVEQIIQLNEKQQIFVIRPSRTVKISRLETDVNKIQAMYDLGVEDAKNALAGLRA
                     YLAK"
     gene            21083..21400
                     /locus_tag="PXE92_000404"
     CDS             21083..21400
                     /locus_tag="PXE92_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL5759692.1"
                     /translation="MADAEFMDFLLDQLSPISGLRSKKMFGEYCLFFDNKIVAIISKD
                     YRIFVKANPQTLPLFLAENAEQFHYFAKGKVQKMHYWSIPELAIEEADELVKWIRLGL
                     QAV"
     gene            21491..22204
                     /locus_tag="PXE92_000405"
     CDS             21491..22204
                     /locus_tag="PXE92_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
                     /protein_id="HDL5759693.1"
                     /translation="MNQKKLVSLIVVIVLAIISQIFSFFDKKEPSKAQEKSTQSSQSH
                     QVSTSSLGNYDVQMKNDRLKQHIVDTDYYTLALSWSPAFCQKQKRNNHGKIPSHLEYQ
                     CGGSADFGWVIHGLWPQSGKARSVDEHPRYCQGDLPMVAEQTIKQYLPESPGATLLQG
                     EWEKHGACAFNQADDYFAKQKELFNQLKLPDTEMSKLALFNWMRANNPHLQNVYLGGS
                     KDELYICYDKAFQPMDCPR"
     gene            22204..22698
                     /locus_tag="PXE92_000406"
     CDS             22204..22698
                     /locus_tag="PXE92_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HDL5759694.1"
                     /translation="MADLRQLKMQVQRQLKRDLERANHYFNTTFTPPSISYAVRGVKA
                     GVAYLERNEVRFNPVLLQENEQAFIRQVVPHELAHILVYQHFGRVQSHGKEWKMMMET
                     VLGVPAEIYHCFDTQSVQQQFSYQCACQTHQLSIRRHNAVMRDKKSYICRLCKTQLHF
                     VEKS"
     gene            22803..24083
                     /locus_tag="PXE92_000407"
     CDS             22803..24083
                     /locus_tag="PXE92_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL5759695.1"
                     /translation="METIVIVGGGAGGLELATYLGNKLGRKQKAKVVLIDRNATHLWK
                     PLLHEVATGTIDEGTDALSYRAHAKNHSFEFQQGTLVAVDREKKTVSLAPIYNDQNQL
                     LVKERHISYDKLVIAIGSKSNDFGTKGVAENCIFLDGSEQAKDFQKRMMELFLRFSHS
                     ENKDVKIAIVGGGATGIELSAELYHVVKNLNSYGFGKLNRASLKVTLIEAGPRLIPAL
                     PEKVSVSAFHELKKAGVSVRLGTMITEARPDGLMTRLGEKIEADIMVWAAGVKAPEIT
                     REFGFETNRLNQIEIKDTLQTTVDESVFVIGDCASLIQDGKPIPPRAQAAHQMATRCG
                     KNIVALIEGKEMKPFRFNDKGSLLSFSKFGTVGNLMGNLVSGDMFIEGKIARLAYLSL
                     YRMHQVALHGCVKTGLIVLVGQINRFLRPTMKLH"
     gene            complement(24170..25207)
                     /locus_tag="PXE92_000408"
     CDS             complement(24170..25207)
                     /locus_tag="PXE92_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5759696.1"
                     /translation="MNVLKLISLKSILIASGIFLSAQAAQAEGRLTVYCSVQNNVCEE
                     MTKQFSHKYNVETKFIHGGTGTIFGKVKAEASNPQADIWYGGTIEPHFQAGELGLLEA
                     YRSPKQAEILPQFKSLVESEQGKFTSIVYMLVLGLGVNTEKLAKLGIEAPKKWEDLSD
                     PRLKGEVQLPDPRSSGTTYTFMTTLSTLWGEEKTFDYLKKLNNNVSQYVKSTLVTSNL
                     ARGESAVTVGFVHSYATEKEKGAPIEAIIPEGKVGYALGGVSIIKNARNLDNAKLFMD
                     WVLSKEAQEIPWKKHGVYQTPTNINAEVAPQSTKAEALDFVEIDYQKAGSSEEGKRLI
                     DKWLAEIKLAN"
     gene            25429..26127
                     /locus_tag="PXE92_000409"
     CDS             25429..26127
                     /locus_tag="PXE92_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HDL5759697.1"
                     /translation="MENSWKYAFKLITPIFMGYFAAGVAYGMLATNAGMPAWFTIVMS
                     FTVVSGTAQYAAIPFFVSGVGAVSVFLSTLLMSLRFSFYTLNMMEHKPISKAKSLVAI
                     AGLTDEGFAVLSSLPKEQKQALFFKIAVLCVAYWTFSTIVGVLLGDSVANYIPHLDFA
                     LPCLFAILAYEQYKNQKQWKPIVIALIGFLLARQITETSVLLVAILVAIVIVALLPQS
                     SSIKLEKGVENEHK"
     gene            26138..26440
                     /locus_tag="PXE92_000410"
     CDS             26138..26440
                     /locus_tag="PXE92_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HDL5759698.1"
                     /translation="MFAALVLGSQICRFLPEFLPKKVLSSPILQKLNKMLPLVIMLLL
                     LLTSLNFPKNGEGFNLILAQILALIGVLGSYVWLKNTFLSVALGIFGVNVFLSLLG"
     gene            complement(26561..27862)
                     /locus_tag="PXE92_000411"
     CDS             complement(26561..27862)
                     /locus_tag="PXE92_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL5759699.1"
                     /translation="MSLFKFEERGSNARQEIIAGLTTFLAMVYSVIVVPGMLSQAGFP
                     AESVFIATCLVSGLGSILIGLWANAPMAIGCAISLTAFTAFSLVLGQQVSIPVALGAI
                     FLMGVVFTLISATGIRTWILRNLPSSIAHGAGIGIGLFLLIIAATNVKLVVNSGMDIP
                     VKLGDFTSFPVLVSLIGLAAIIGLEKLKVKGSILWVIIAITIVGLIFDPNVKYTGFFK
                     MPSFGENSQFLNLDIMGALNTAILPVVFALVMTAIFDATGTIRAVAGQAGLLDKDGQI
                     INGDKALTSDSFGSILSGLFGTAPAAVYIESAAGTAVGGKTGLTAVVVGIGFLFMLFF
                     QPLAFLVPSYATAPALMYVGLLMLSNVSKLDFSDFVGAMSGLVCAVFIVLTANIVTGI
                     MLGFATLVIGRLISGEANKLNLGTVIIAIILVAFYAFDLAI"
     gene            complement(27995..28969)
                     /gene="secF"
                     /locus_tag="PXE92_000412"
     CDS             complement(27995..28969)
                     /gene="secF"
                     /locus_tag="PXE92_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HDL5759700.1"
                     /translation="MAIENVQQDVAEIKLPYKLIPFMKYRYVGFIFSLIVTALCIFTI
                     ATKGFNWGLDFTGGTVIETQFSQPADLAKLRTELENSGYGNALVQTTGSQKDLMIRLA
                     ASAGDMSVGNKVMEMIHQKLDPNATIKSIEFVGPNVGEELTQGAIYATLATLAMLLIY
                     VGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQIEIDLTFVAAILSVVGYSLNDSIVVF
                     DRVRENFSKVRRSSSIEIIDISLSQTLSRTLMTSVTTLFVVLALFYLGGPTLHSFSLA
                     LLIGIGFGTYSSIYIAIGVALQLGLKREHMVQPKVEKEGADQDAFIDY"
     gene            complement(28979..30820)
                     /gene="secD"
                     /locus_tag="PXE92_000413"
     CDS             complement(28979..30820)
                     /gene="secD"
                     /locus_tag="PXE92_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HDL5759701.1"
                     /translation="MLNRFPLWKNLMVIFVIAIGALYALPNLYGDDPSVQISGTRGQQ
                     ATPETLSQVQSTLSAMNIQPKSAVLENGSILVRLESSEQQLPAKEKISEALGNNYSVA
                     LNLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRK
                     EKLQYQAVKKGENFATEVEFADNDTAEKAVRLVRLSHPTLDILVNDNKVTLTPSAQAL
                     SESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATA
                     TLEFRLVNTEANVASAAKGIVPADSGLQNTRDGEPVVLRRKPSLGGEHIIDATSGTDE
                     RGLPQVSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQEVI
                     NVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK
                     QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGI
                     VLAVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLY
                     GVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI"
     gene            complement(30860..31153)
                     /gene="yajC"
                     /locus_tag="PXE92_000414"
     CDS             complement(30860..31153)
                     /gene="yajC"
                     /locus_tag="PXE92_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL5759702.1"
                     /translation="MQQGGGMEMIFILIIFGAIFYFMIYRPQAKRQKQQRDLLASLTK
                     GDEVLTSGGLIGKITKVTADNDNIVIALNDTTEVTIKRDFVVAVLPKGSLKSL"
     gene            31354..31911
                     /locus_tag="PXE92_000415"
     CDS             31354..31911
                     /locus_tag="PXE92_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HDL5759703.1"
                     /translation="MKKLFAQAVIFGAFFASSAFAHNVQLNQALPAVSVAKDGELAVA
                     GGKVSYKNWHSSSLAGKVRVIHHFAGRSSVKEKNEDLMTAIKNAGFDRSKYQTVTIVN
                     ADDAIVGTGVFVKNSVENGKLDNPHSQVVLDQQGSVKKAWGLKEKESFIAVLDKSGKV
                     QFTSEGKLSAKQIQEVIGLVKTLTQ"
     gene            complement(31952..32920)
                     /locus_tag="PXE92_000416"
     CDS             complement(31952..32920)
                     /locus_tag="PXE92_000416"
                     /EC_number="5.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HDL5759704.1"
                     /translation="MKLFTLENAFLRITLSDVGASWLSCIVKMPNEEREVLVTTSAKN
                     WQKQTAFFGATIGRYANRIANAEYRLNGKTYQLAKNNGEHNLHGGELGADKIVWQLES
                     QSEQAVKFSYFFADGEEGFGGEVKAFVEYRLTENELQISFDAVANQDTPLCLTNHAYF
                     NLQGSETILDHELIINADGYLPVDASGIPNAPLKKVESTSFDFRNAKKIGQDLLADDD
                     QKAVKGYDHSFHLAKNSENPTACLAVEDLKMELRTSMPALQLYTGNWLKGQPNLTKGE
                     YEDYAGVALEPEFFPNSLNQPELLQFGGITKAGEEYHHTISYRFII"
     gene            complement(33046..34209)
                     /gene="galK"
                     /locus_tag="PXE92_000417"
     CDS             complement(33046..34209)
                     /gene="galK"
                     /locus_tag="PXE92_000417"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HDL5759705.1"
                     /translation="MKPQEIALQQFEQHFGYKAERTVFAPGRVNIIGEHTDYNDGFVM
                     PCAINYGTAVSFAKRSDNKWRVFAIDLNQQDEFDLSQAIEPSEQKWANYVRGVVKFIQ
                     AKHPEFKQGADLAITSDVPMSSGLSSSAALEVSIGKTAQLLGDLPLSLPQIALIGQEA
                     ENKFVGCNCGNMDQLTSALGQQDHLVMIDCRSLEITPTPVPQGYSIAIINSNVKHDLV
                     TGEYNSRREQCEFAAHFFGKAKLRDVTAEQFIERASELSEENELAYKRAKHIISENQR
                     VLEAVEALKANDMVKLGELMAQSHDSMRDDFEITCPEVDCLAEIAQQAIGKNGGARMT
                     GGGFGGCVVCLVPNDKVEDLRQAVANNYEKQTGIKETFHVCTASDGVRECPAR"
     gene            complement(34219..35265)
                     /gene="galT"
                     /locus_tag="PXE92_000418"
     CDS             complement(34219..35265)
                     /gene="galT"
                     /locus_tag="PXE92_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HDL5759706.1"
                     /translation="MSEFVLNDHPHRRFNPLKNQWILVSPHRAKRPWQGQQEEIVQDE
                     KPSYDPSCYLCPGNKRITGEQNPNYTKPFVFKNDFSALLPDTPAPIPNDDPLFQISHT
                     QGESRVICFSPDHSKTLPQLSIEEITDVVTVWQEQANELKEHYQWVQIFENKGSMMGC
                     SNPHPHGQIWASNFLPNEIAIEDECQAKYFAQYGSPLLLDYAQRELDKQERIVAETED
                     WIAVVPYWAAWPFETLLLPKAKQFKSITDLNEAEKADLALALKKLTTRYDNLFNISFP
                     YSMGFHFAPFNGKENAHWQLHAHFYPPLLRSATVRKFMVGYEMMAESQRDLTPEQAAE
                     RLNAVSDTKHYKDK"
     gene            35478..36329
                     /locus_tag="PXE92_000419"
     CDS             35478..36329
                     /locus_tag="PXE92_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF817 domain-containing protein"
                     /protein_id="HDL5759707.1"
                     /translation="MERLNKFDAWLMNHKPNARLSGASRLLTEFWFFGLKEARACLFA
                     GLFFIAMFSVPKTGLWGLPRYDILLIFAIVVQIAMVKLGLETWDELKAISLFHLVGFV
                     LEVFKTSSNIQSWAYPDFAYTKLFNVPLFTGFMYAAVGSYIIQAWRLFDLKIKSHLPY
                     WLATLTALMIYLNFFTHHYIGDYRWYIAAFALGLYARTFVFFTPYDITRKMPLLLSFF
                     LIGFFIWLAENIGTFAGIWRYPNQFGAWSMVHMSKWSAWALLVMMTFTIIVHLKHIKQ
                     TVRVSSD"
     gene            complement(36415..37500)
                     /locus_tag="PXE92_000420"
     CDS             complement(36415..37500)
                     /locus_tag="PXE92_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5759708.1"
                     /translation="MEYRYYITTALVIAVLQLFLFNFAKTVSWLFNLSSKNRKTVGIL
                     TFLVANGLVILHLTRTFALFRIMAFILVLLLFAFFISFFTACIYKIFNGNTTVNRWLK
                     IAYPFAFFGLLGLGYYNAYTPTVVHYSVKLDKPLEKPLRIGMASDLHLGKLFGTKQLD
                     QLAEIFNQQKVDLILLPGDIMDDNTEVYVADKMQPHLAKLKAPLGVYATLGNHDFFGA
                     QETIAKEITDAGITVLWDQTAEINGKFTLIGRNDDLVKNRPSAEQLLQNVNTKLPVIL
                     LDHRPTEIEQHAKLPIDIQVSGHAHKGQVFPASIITKLIYRLHYGYEKIGFGHYFVTS
                     GYGFWGVPMRLGSQSEVMIIDVEGENP"
     gene            complement(37522..38502)
                     /locus_tag="PXE92_000421"
     CDS             complement(37522..38502)
                     /locus_tag="PXE92_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL5759709.1"
                     /translation="MLFDSIQFSIGVTLPTILLMLFGIFPRRRKFIDDTFCNMASKVV
                     FNFTLPPMIFLNMLKSPLDFSSQINLISTGVGGSILIYLWAEWWAARHIENRRYRCIF
                     TQGTFRTNAAILGIALILNAYGDKALAAASVYISCLVITFNVLAVITLTSSLSEKKVN
                     FGRLILSILRNPLILAVIAGLTFNYFELSHQIPTPLESAGKLMASLTLPLALICTGAS
                     INFKQLKQFNQGVESTINKIVLFSASIRLIFAPIFLLLLGKFVFQLPPMELGIVFVAA
                     SAPVASATYAMTRNYGGDGEAAANLIGITTLGSMFSASIGLFLLRQIGWV"
     gene            complement(38605..39703)
                     /gene="prfB"
                     /locus_tag="PXE92_000422"
     CDS             complement(join(38605..39627,39629..39703))
                     /gene="prfB"
                     /locus_tag="PXE92_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550889.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDL5759710.1"
                     /translation="MFELNPIKNQLTDLSERTAVIRGYLDFEHKVERLEEVNAELEQP
                     DVWNKPEKAQALGKERAMLEQIVNTIKALEQGIEDVEGLIELAVEAEDQDTFNEAQVE
                     ADELEKKLADLEFKRMFSGPHDSADCYLDLQAGSGGTEAQDWTEMLLRMYLRWAESKG
                     FKAELMEASDGDVAGIKSATVKISGDYAYGWFRTETGIHRLVRKSPFDANNGRHTSFS
                     AAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQN
                     GRSQHQNKDQAMKQLKAKLYELEMSKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DHRTGVEHRTTQQVLDGDLDKFVEASLKAGL"
     gene            39959..40867
                     /locus_tag="PXE92_000423"
     CDS             39959..40867
                     /locus_tag="PXE92_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HDL5759711.1"
                     /translation="MAKRPSDIDATLLQLEILRRIPKLPAKIDAKSLHQQLLDAGFER
                     DIRTVQRSLKMLCEHFDIECDERSKPFGYSWKIRSEGLALPILNEQQSLLLKLAEQQL
                     KYLLPANLMASMKPFFEQADRMVSGAKDKPEYQWLNKVCSTPTSLPLIPAKIKEEIFN
                     SVSQALFQNKLLKIEYQNQHGKKHQATIMPLAISQQGASIYLVCRYEGFDDNRLLALH
                     RIRKAEISTFSFERPKDFNLQAYQDAGHLGFGNGEKASLTFSISRDAGFHLTETPLAK
                     DQKILEESETHYRIQAIVADNDMLTW"
     gene            41168..41809
                     /locus_tag="PXE92_000424"
     CDS             41168..41809
                     /locus_tag="PXE92_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HDL5759712.1"
                     /translation="MPFQLTFCQQAGNQHQKNQDALFNGKAVYQWQLKNAESYLLDND
                     KVIFGVADGVSSHPRNHLASHYLMALLSQCQSLDSQWLRQAHGDFCEKLAKDYFGASC
                     TFVACELHHNGRGRMVNVGDSRAYKITANGEWQQLSFDHTILAEMKQKGLVKEGSNYA
                     SMYNGLTDCIVADFDADDFRIHIAEFQLEKGESILLCSDGLHEQLAPEAIQAI"
     gene            41976..>42181
                     /locus_tag="PXE92_000425"
     CDS             41976..>42181
                     /locus_tag="PXE92_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005637830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDL5759713.1"
                     /translation="MKNDFHYAAELIRNADGILITAGAGMSVDSGLPDFRSVGGLWNS
                     YPPLKKFNLQFMQIATPLAYQERP"
BASE COUNT        12251 a         8564 c         9402 g        11964 t
ORIGIN      
        1 cctctttgtt aattaagtta gaaaaatgcc tctgtgaaaa tcacagccat actaggaaat
       61 aaaaggattt aatttataaa tgaattgact ataagcaata taatctatcg aattatctct
      121 tttgttcaag gcaagtatgg atacctgacc gcaggcctgg agatagaacc tacatataat
      181 atgctctact acattaagcc ataaaaaata gaaaatcaag tgtttgttca agtttttatg
      241 ttattgaatt tacaataact acaaaaattt atcttaattg gctcgattga tttttacaca
      301 aaacatagct aacatatcca aaatcactca cattaggagc ttaaaaatga cagcgattac
      361 tatccctcaa tttgaagagg tgacttctaa gcaatttcaa tctgagttcg gcagaattgt
      421 tgatatcgta aaaggcaaaa cccctgtggc gattacccaa tatggcagac cgacaatggt
      481 gctttttcct tacgatcaag cggttgaagc tcggcgatta ttagcaaaac agcgtttgct
      541 tgaaatgctt gcagagcgag ataagaatcc gccggcagct cttgcagaaa tcacgcttga
      601 agagttggat aaaatgattg atgaggaacg taatgcactc tgattattta gtgattgata
      661 cgaatatttt gattagtggt ttattgttcc caaaatcaaa tcccaattta gcagtgaaaa
      721 aagccttatt aggctatacc atttgtgtct cgcaagcgac ttttgacgaa tttttagaag
      781 tctccgctag accgaaattt gctaaatatt tcagtattca ggaaagggaa gaatttattg
      841 ccaatttgtt ggatgcagta aagtttgtgg aaattaaaga aacgattaca gattgccaag
      901 atcccaaaga taataaattt ttagaagtgg cgatcagtgc aaaagcgaag tatttagtga
      961 cgggcgataa aaaagatctc ctcagtatga acccttatcg gaatgttgaa attatttccg
     1021 tcagcgaatt tttagcggaa actcgctaat gaaacggttt ctcactcttt ttcttctcct
     1081 tttttcatct ttttcattag ccgaaaccca ccaaatcggc attctcgctc agcgtgggga
     1141 agcctacacc cgcacccatt ggcagccttg ggtggattgg ttaaattcgc agtttcccaa
     1201 cgagcggttt gagctggttc cattggggat taacgaggcg agccgccggg cggagttgga
     1261 ttttctgctg accaatcaag ctcagttttt ctatttgagt aaccaaaatg tgcgatggct
     1321 tgccacgctc aacagtccgt tttcggcaaa tggtgagcaa ggggcggtgg gcagtagcat
     1381 ttgggtgcgt gccgacagcc attatcagca gttaagcgat ctgaaaaatc agactatcag
     1441 tgcggtggat aacgatgctt tcggcggttt tttgcttggg ttgtatcagt ttcatcaagc
     1501 aggaatgcgg caaaatcggg atttttcggt gcagtttagc ggttttccgg tggaaaatgc
     1561 gttggctttg ctggcggaaa aacaggtgga agcggcgatt gtaccggtct gtttgctgga
     1621 agagttggag aaagagggca agttcaagcg gtcggatttt cgcttaattt tgcaaaaccc
     1681 acaggcgcag ggttgccttg ccagcacgcc gttgttgccg aactggtcgc tggcggcaat
     1741 ggaaaatgtg ccaaacgagc tggcggtaca gcttgccaca cgcttgctaa acagccacaa
     1801 tcccgaccta ccccgctgga cgttgccgtt ttcttccgcc caagccgatc acattctgcg
     1861 tgaactgtat cgccacccgc aacaaaaaag cctgtgggca acggtgctgg attgggttcg
     1921 tctcaataaa ttcggcttgt tggcggtggt gttgttcatt ttgctcaacc ttgtcgccct
     1981 gcgttatcag gtctatcgca aaagcaaggc gttacagcag gcacactgca aaatgcagca
     2041 gtatcagcag gaactgaccc gagccgaccg ccttgctttg ttgggcgaga tgacaaccgg
     2101 ttttgctcac gaactgaaac agccgttgtc ggcggtgcga atgtacgccg aggggctgaa
     2161 aagccaaaac agcgatcctt atcaacagcg gattttggat aagctgattg cgcaggtaga
     2221 tcgggcagtg aaaacgatgc agagcattcg ggactgggcg caaaaccgcc cgagtggtga
     2281 accgcaagcg gtcattttga accaattgat tactaatgtg atcgagtttg tggcggtgga
     2341 aaatcgccag aatgcacaaa tctcgctgat tgccgaccgc acttttcggc ttaatttaca
     2401 cgccacggta ctggaacaag tactgacgaa ctgcctgctc aacgccctgc aagccggtgc
     2461 aagcgagata tcggtgcggt tacaagcggt cgaaaacggg ctggaaattg caatcgaaga
     2521 caacggcggc ggtttttccc ctgcccagct tgaatttccg tttgtgccat ttcgcaccga
     2581 caaaccacac ggcttagggc taggcttggt gctatgccaa cggctgatgc aatcgctcaa
     2641 cggacggatt gtattggcga acggggagaa cggggcgaag gtagtgcttt tactccctca
     2701 aatataaatg taggggcagg tcctgtgcct gcccgtaaat cctatcaaat tcagggcggg
     2761 cacaggaccc gcccctacgg aaaaaagaaa aaatgattat tcacattctt gatgacgaag
     2821 aaagcatttt agacgctatg tcgttcctgc ttgccccgct tggggtggaa atccaaacgt
     2881 ggcaatccag cctagatttt ttggcacagg cggatttaca ccggcaaggc gtgctgttac
     2941 tagatattcg aatgccgctg ccagacgggc aacaggttca tcaacaactg cgagaggcac
     3001 aatcgaccct ggcggtggtg attatgaccg cccacggtga tgtgccgatg gcagtcgctg
     3061 aattgaaaaa aggcgcagtg gattttctgc aaaagccggc aagttttgaa cagctaaaac
     3121 aggcgattgc acaggcggaa aaagtaagtg aaaaagcggt gaaaattcgt gaaaattcgt
     3181 gaaatttcgc aaaattacgc caaattgacg gaaaaagagc gtaaccttgt gccactgatt
     3241 atgcaaggtt tcaccaataa acagatcgca gataaattag cgatttcagt gcgtacggtg
     3301 gaagtacatc gagccaatgt gatggaaaaa atgcaggcgg agagtttggc ggggctggtg
     3361 cagatgatcg gggagttaca atataaaggt agcggaaatt gctctgctac ctttagtttc
     3421 gacttttgcc gtattaattt acttctttaa actgaatcat tcccgcttcg gcaaaattgt
     3481 tatcgtcatc ttcgtataag aaggttttgg cttcaatttt gacatcatca aaagcggtgt
     3541 cgccttctat gccttcaatg gtttgaccgt gtttaatccc tttaaaatca aacaatttcg
     3601 gatcgcataa gtgggatggc acgatatctt gcaaagcact gaacattgtt tctaaacgcc
     3661 ccgggtattg gcgatcccaa gtattcagca tttctttcac cacttggcgt tgtaaattag
     3721 gctgagaacc acacagatta cacggaataa tcgggaactg cttggcttcg gcatatttga
     3781 taatgtcttt ttctttacaa taggcgagtg ggcggatcac aatttgcttg ccgtcatcag
     3841 agatcagttt aggtggcata cttttcattt tgccgccgta gaacatattt aagaataaag
     3901 tcgccagcat atcgtcacgg tgatgcccta atgcaatttt ggttgcaccc aattcggtgg
     3961 cggtgcggta taaaatccca cggcgaagtc gtgagcaaag tgaacaggtg gttttgccct
     4021 ccggaatttt ctcttttacg atgccgtagg tgttttcttc cacaattttg tattccacgc
     4081 caatgctttc taaatagcga ggcaatacct cttccggaaa tcccggttgc ttttggtcta
     4141 aattgaccgc taccacacta aaattcaccg gtgcactttg ctgtaaattg agcaaaatat
     4201 ctaacagcgt atagctgtct ttaccgccgg aaaggcagac cattacacgg tcgccctctt
     4261 caatcatacc aaaatcggca atggcattac cgacattacg gcgtaaacgt ttttgtaact
     4321 tgttgaaatt ataagtaatt tttttatcag atttttgaat atcgtctgtc ataatagttg
     4381 tactaggctt agaaattagc ggtgtatagt aaagatttcg cactattttg caagttaatt
     4441 attcggcttc agcgtagcga tatagttaca actcacatca ttattgagcc aaaatttttc
     4501 ggttaatggg ttgaaatggt agcctctcat ctcttggcaa cgtaaatcag cctgatcgca
     4561 ccaagctaac aattcggcag gcttgatgaa tttttcaaat tcgtgcgtgc cttttggcaa
     4621 cattttcagc acatattccg ccccgataat taccaacata taggctttaa aagtacggtt
     4681 gatggtagag aaaaacagca cgccgtcagg tttgagcagg gctttacagc tttgaatgat
     4741 agaaagcgga tcgggaacgt gttccagcat ttccatacaa gtaatcacat cgaatttttc
     4801 ttgattacaa gcggtcattt ttgctaaaaa attttcaatc gtggtttgtt ggtaatcaat
     4861 ctctaaccca ctttctttgg cgtgctgctt tgccacttca agcggttgag aggtcatatc
     4921 gatgccggta acaatcgctc cctgttttgc cattgcctca cttaaaatac cgccaccaca
     4981 gccgacatct aacacctttt tgccaaataa accgttcgat ttttctaaaa tataggctaa
     5041 acgcagtgga ttaagcagat gaatcggctt gaaactgccg tttggatccc accaggtttt
     5101 agccatattt tcaaattttg tgatttcttg ctgatcgacg ttttgcataa actgttccta
     5161 tggtaaattt agggcattac tataacgcat ttagcctaaa aggaaaatca gaatgacccg
     5221 aattaacctt gttccgccaa cggaattatg cgatcaacat ctgcttgccg aacatcgtga
     5281 acttactcgg attccgaatg cggtagcgaa aggcaaattt agcctaaaag gacagccaga
     5341 agattacaaa ctgggcgagg gacacgttcg gtttttcttc aataaactca cgtttttgaa
     5401 aaagcgttac gatgcgttac acgaggaatg tttagcaaga ggttttaagg tgcaatattt
     5461 ctgggcggaa catttaccac aagatccctc tctctggcta gattatcagc cgactgaaac
     5521 cgctctgact gtaaatcggg agcgaattgc attaagaatg ccggcaaatc cacgttttag
     5581 cgaaagaaaa tgaccgcttg tacgcctttt tgttgctttt tatgctataa tctcgccaat
     5641 tttttcgcct tatttaaggc tcttttacta ataaaattag gaaatttcaa tgagcgaatt
     5701 agccaaagat attattcccg taagtattga ggacgaatta aaaacctctt accttgacta
     5761 tgcgatgtcg gtgattgttg ggcgtgcctt gcctgatgta cgagacggtt taaagccggt
     5821 acaccgccga gtgctttttt caatggatca aaacagcaac acctataata agccgcacgt
     5881 taaatctgcc cgtgtggtcg gtgatgtgat cggtaaatat cacccacacg gtgactttgc
     5941 ggtgtataac actattgtgc gtatggctca accgttctca ctacgttata tgttggtgga
     6001 cgggcaaggt aactttggtt ctattgatgg cgatgcaccg gcagcaatgc gttataccga
     6061 agtgcgtatg cagaaaatta cgcaggaatt attaaccgat ctcgataaag aaacggtgga
     6121 tttctcaccg aactatgacg gcaaagagat gattcctgat gtattgccaa ccaaaattcc
     6181 ggctctgtta gtcaatggtt cttcagggat tgcggtcggt atggcaacca atattccacc
     6241 tcataattta ggcgaagtat tagatggttg cttggcgtat attgaaaatg aacagattag
     6301 tgttgaagag ctaatgcgtt atatcccggg gccggatttc ccgaccgggg cgattatcaa
     6361 cggtcgtaaa gggattgaag aggcttaccg caccggtcgt ggcaaggtgt atgtgcgcgc
     6421 gaaagccagc gtggaaacaa ctgataaagg gcgtgagcaa attgttgtaa ccgaactgcc
     6481 ataccaagtg aataaggcaa aattaattga aaaaattgcc gagctggtta aagagaagaa
     6541 aatcgaaggc atcagcaaaa ttgatgacta ttccgataaa aaagggattt cgattgttat
     6601 tgaagtcaag cgtgatgcag tgggtgaagt ggtgttaaac cacctttatt ctttaaccca
     6661 aatgcaggtc acgtttggta tcaatatggt ggcgttagat aatgggcagc caaaagtgct
     6721 gaacttacgc cagatcatcg aagcctttgt taaacaccgt cgtgaagtgg tcacacgccg
     6781 tacgattttt gaattgcgta aagcccgtga acgtgcccat attttagaag gtttggcgat
     6841 tgcgttagcg aatatcgacc cggtaattga attaattcga gcctcaaaaa ccgcagaaga
     6901 agcccgtgaa ggcttattgg ctcgcccttg ggcattaggc aatgttgcac caatgttaga
     6961 ggctgctggt gttggtgctt cccgaccgga agatttacct gaacacttag gagtgcgtga
     7021 tggcgaatac tatttatctg aagctcaagc cagagcgatt ttagagctac gcttacaccg
     7081 cttaaccggt ttagaacacg agaaaatcgt tgaagaatac aaagaactct taactgaaat
     7141 tggcgaatta atccacattt taaccagccc agaacgctta atggaagtga tccgtgaaga
     7201 gttagaacgt gtaaaaaccg attttaatga tgaacgccgt actgaaatta ccgcagcctc
     7261 tggcgacatc aacattgaag acttaatcgc acaagaagat gtggtggtta cgctttctca
     7321 cgccggctat gtgaaatatc agccgttatc cgactacgaa gcacaacgcc gtggcggtaa
     7381 aggtaagtcg gcaaccaaga tgaaagaaga tgatttcatc gaaaaactct tggtggcaaa
     7441 cacccacgac accattcttt gcttctcaag ccgtgggcgt ttatatcaat taaaagtgta
     7501 tcaattaccg caagcaagcc gtggggcaag aggcacgccg attgtgaata ttctgccgtt
     7561 agtgaaagaa gaaaacgaac gtattaccgc gattctaccg attccaaacg gtgaatttag
     7621 tgccgataag tttatcttta tggcaacagc tagcggtgta gtgaaaaaag tttcccttga
     7681 tgcctttagc aacgtgcgtg caagcggtct gattgcgtta aaacttcgtg aaggcgatga
     7741 gctgatcggg gtagatatta ctgatggtaa cagcgaaatt atgttgttct cggcacaagg
     7801 gcgagtagtt cgctttgccg aaacagcagt tcgtgcgatg ggacgtaccg ccaccggcgt
     7861 acgaggtatt aaactttcta ccaccgaaat ttcaagcgaa gaaattgaag aagctgaaat
     7921 tattgaaact gacaatgaag aggcagaaga ttcctccagc gtcagccttg ataaagaccg
     7981 tgtggtttct ttagtgattc ctcgcaccga aggcgatatt ttaaccgtca cccaaaacgg
     8041 ctacggtaaa cgtacggtga ttagcgaata tccggtgaaa tcccgagcaa ccaaaggggt
     8101 cgtttcgatt aaagtgaatg aacgaaacgg caaagtggtt gcggcagttc aagtagagga
     8161 aaccgaccaa attatgttga ttaccgatgc cggcacgctg gttcgcaccc gagtggcaga
     8221 agtcagcctc gttggacgaa acacccaagg cgtacgtatt attcgcaccg cagaagacga
     8281 acaagttgtt agccttgaac gagtctgcga gcctgaagac gatgaaaatg aaagcctaga
     8341 cgcattagaa aatgccgaaa cagcagaaac atcaactgaa gaataatctt aactaaacaa
     8401 gcggtcgaat tttcacaatt ttttgcaaaa atagaaggaa attcgaccgt ttttggatca
     8461 tacagtagat aataaaaact atggcactta tcaatctttc caacgcctat ttaggctttg
     8521 gcgatcatcc tttattggat catactgaat tacatatcga acccggcgag cgggtttgtt
     8581 tggtggggcg taacggggcg ggtaaatcga ccctgatgaa aattctggcg ggcgaagttc
     8641 agcttgatga cggcaagttg gtatttgaaa aagacattgt cgttacacgt cttgaacaag
     8701 atccgccccg ccatattgaa gaaacggtgt tcgattatgt ggcggagggg attgcccatc
     8761 ttgccgactt attgaagcaa tatcaccaca tttccctgca aatgcagacc gattacagcg
     8821 atgaactgct cgccaaactt tcagcggtgc aatcgcaatt agaacacgct aacggttggc
     8881 agtttgaaaa ccgcattcaa gacaccttga aactgctgga actcgccccc gacaaacgcc
     8941 tgtgcgaact ctcaggcggt tgggtacgcc gtgcggcatt ggctcgggcg ttggttgccg
     9001 atcctgatgt attgctgttg gacgaaccga ccaaccacct cgacattgag gcgattgcgt
     9061 ggctggaaaa tctgttattg gatttcaaag gcagtattat ttttatctcg cacgaccgtg
     9121 cctttatccg caaaatggcg actcggattg tggatttaga tcgaggcaaa ttggtttcct
     9181 acccaagcaa ttacgataaa tacttggaag aaaaagccga ggatctgcga gtagaagcgt
     9241 tgcaaaatga gctgttcgac aaaaaactcg cccaagaaga agtctggatc cgtcaaggga
     9301 ttaaggcaag acgcacccga aacgaagggc gtgtgcgagc gttgaaagcg ttgcgtgaag
     9361 agcgtagaaa ccgccgagag gtacaaggca cggcgaaaat tcagatcgac aacaccgcac
     9421 gcagcggcaa aattgtgttt gaagtggaaa atgccggcta tgaaatcggc ggcagaaccc
     9481 tgctgaaaaa tttcagcacc accattttgc gtggcgataa aattgccctg attggagcga
     9541 acgggatcgg caaaaccacg ctgatcaagc tgttacttgg cgaaattcag ccgacatctg
     9601 gttcagtgcg ttgtggcaca aaattggaag tggcgtactt cgaccaatac cgagtcgatc
     9661 ttgaccctga aaaaaccgtg atggacaacg tggcagacgg caagcaagat gtagaagtaa
     9721 acggggtgaa acgccacgtt cttggctatc tgcaagactt cctgttcccg ccaaaacggg
     9781 cgatgacacc ggtgaaagcc ctctcgggtg gtgaacgcaa ctgcttgttg ctggcaaaac
     9841 tgttactcaa accgaacaac ttgctgattt tggacgaacc gaccaacgat ttggacgtgg
     9901 aaaccctcga actgctggaa gagatgctca ccgactatca aggcaccctg attattgtga
     9961 gccacgaccg tcaatttgtg gataataccg taaccgaatg ctacttcttc gagggcgaag
    10021 gcgtggtgaa taaatatgtc ggcggctatt tcgatgccaa acaacagcag gaaaattact
    10081 tcgccgccac tgccgacaag cggttaaatt cgagtaaaaa tttgcaaaaa atagaggaaa
    10141 aagcaccgct tgcggagcaa gagaaacaga aagccgatca ggaaaaaacg aaagcagagc
    10201 cgacgaagaa aaccaaactt tcctacaaag aacagcgtga actggacgag ttaccggcta
    10261 aaatggaaca gcttgaagcc gacattgaag ccctgcaagc cgaagtaaat agtgccgaat
    10321 tcttcgccaa agatccaagc tacaccaacg cccagctaca aaaacttgcc gataccgaag
    10381 ccgcgttaga gcaagccttt gagcggtggg aagcgttgga aaatattaaa aacgggaata
    10441 tctaatgtag gggcgaatga ttattcgccc ttgatggata aaatgattgg gcgaaaaatt
    10501 tttcgcccct acaaatgtga agcaaaatga cagaaagatt agataactac gaacaacgtt
    10561 ttggtggcat tggtcgcctt tatacgccgg aaggattgga gaaactacgc cgttcgcata
    10621 tttgcgtgat tgggattggc ggggttggct cgtgggcagt ggaggcattg gctcgctcag
    10681 gtatcggtaa gatcacgatg atcgatatgg acgatatttg cgtgaccaat atcaaccgcc
    10741 aaattcacgc aatgagtggc acggtggctc aactgaaaac cgaagcgatg aaagagcgga
    10801 ttgagcggat caaccctgaa tgtgtggtgg aaattattga tgatttctta acgcaggata
    10861 atctcgcaga ctacctcaat cgaggatatg actatgtgat cgatgcgatt gacagtttgc
    10921 gggtaaaagc ggcgatgatt gcgttttgta aacgcaataa gatcaaaatt atcaccaccg
    10981 gcggggcggg cgggcagacc gatccgacca aaattcaaat taccgattta agcaaaacgg
    11041 tgcaagatcc gttggcggca agggttcgta gcctgttgcg taaagagtac ggtttcagca
    11101 ataaaaacaa attcggcgtg gagtgcgttt cttcgactca gcaactgatt ttcccacaaa
    11161 tgggtgaggc ctgtgaggtg tcggcaacaa tgaactgtgc caacggcttt ggagcggtga
    11221 caatggtgac ggcaacgttc ggcttttttg cggtgagtcg ggtgattgat aaactattaa
    11281 aataacaagc ggtcatatta aatgaatttt ttgcaaatca aggagtaaat aatggcaata
    11341 catcgagtca acccgaaagg gagtatggaa cagctttccc atttggaaat ggagttgttg
    11401 gcaaagaata cgcagggtaa tttgcatcaa ctttatcgta attgctcttt ggcggtgcta
    11461 aattccggtg tgcataccga tgacagccga gcgttgttaa gccaataccc tgattttgaa
    11521 atccgcttat taacccgtga aaaaggcgtg tcgcttgaat tgcataatcc acccgaaact
    11581 gcgtttgttg acggcaagat gattttgaat attcaatatc acctttttgc ggtgctgcgg
    11641 gatattgtgt ttgtgaatgc gttaaaaaat gcgattagac cgcttgaaga gacttcttta
    11701 gaagccttaa ccacgaatac cgtattttcg attttgcgga atgcgaaagc gattgaaatg
    11761 aataccgacc caaatttggt ggtgtgctgg ggagggcatt cgattaatga aaccgaatac
    11821 caatattgcc gtgccgtcgg gcaagagttt ggcttgcgtg agctgaatat tgtgaccggt
    11881 tgcggagccg gtgtgatgga agccccgatg aaaggagcgg ctatcggaca cgccaatcaa
    11941 cgttataaaa acgggcgttt tatcggcatt accgagccgt ctattattgc ctccgagccg
    12001 ccaaacccga ttgtgaatga attggtaatt atgccggata ttgaaaaacg gttggaagcc
    12061 tttgtgcgtt tagggcacgc cattgtggtt ttcccgggcg ggccgggaac gctggaagag
    12121 ttgctgtata ttatcggtat taagttaaac ccggctaacc atgctcagca attaccactg
    12181 attttaaccg ccccgaaaga atcggcagac tatttctatg ccatcgatca atttattggc
    12241 gaaactttag gcgaagaagc tcgcagtttg tatgaaatta ttattgatga ctcggtgttg
    12301 gtggctcgta aagtcaagca agcgatgatt gaggtaaaaa gcagccgtta tgaaagtggc
    12361 gatgcttata atttcaactg gtcgttaaaa attgaggaag attttattac gccatttatt
    12421 ccaacccacg aaaatatggc aaacctgaat ttaagtttag cacagccaaa agagcagctg
    12481 gctgcgaatt taagacgggc attttcaggg attgttgcag gtaatattaa gccggagacc
    12541 tccgatttaa ttgagaaata tggggtgttt aaattacacg gcgatcgtaa attaatggag
    12601 catatagata aactgttgga gcgttttgtg gttcaacacc gtatgaaaat tccaacgggt
    12661 gaggcgtacc aaccttgcta tgaaattgta aaagggtaat gctaacaagg ggtaaggtat
    12721 gtatttaaag catattgaaa tcagtggctt tcgtggtatt aaccatttat cgctccagct
    12781 acgaccaaat atggtattga ttggcgaaaa tgcgtggggg aaatccagtc tgattgatgc
    12841 attaagcctg atttttaacc ttgagcaggc gttgtatcaa tttcagttca aagatttcca
    12901 tattcaatac accgataccc ccaaccaagt gcgggacatt caactggtgt ttaccttttg
    12961 tgaagagcat cagcacgatt tagcggtgca atttcccgct tatttggcac aagccgcgtt
    13021 ttatattgat aatcaccgct gtgtttcgct tgccgtaacc ggaaaattac acggagagca
    13081 gattagcacc gactatcaat ttgtggatca aagcctaaaa ccgatccaga tagaacaagc
    13141 ggaaaacgcc attcggcagt ttatttacca tcaccctgtt tatcgcctgc gtgatgcaag
    13201 gctcaataac agggtgcata atgaattatt acttaaagga tcgtctcaac ttgaagacga
    13261 ttttcaacgt gaattaaacg ccctctcttc gctactgaaa tactattttc taaccagcca
    13321 aagtcgctat ttgatcaaaa ccagtatgca agacaccgca ttgtggtggg aaaaagtaaa
    13381 atccctctgt ttacgcctaa aacagcagcc ggaattggtc gaatctgctc agcagcatat
    13441 ttctactcta tttttgttta atcctagatc tacagtaata gaaaagccga ttattttatt
    13501 tgaagatctg aatgctcaac tacaccctcg aatgattgcg attttttggg aactgctcgg
    13561 ttttttaccc agccaacgga tcaccactac taattctatt gaattgttat cgcaagtgcc
    13621 tctgcgtgaa atctgccgtt tggtgcgtca tcacgatcat acccaagcct attggcttga
    13681 acgccacagt ttaggcaagg aagatttgcg aaaattaacc tttcatattc accataatcg
    13741 tggcttggca ctgtttgcta aagcgtggat tttggttgag ggggaaacgg aggtttggat
    13801 tttgcaagag ctggcgagat tattagatat tcatttggaa atggaaggga tcaaaatcgt
    13861 tgaatttgct cagtgtggct tacgtccgtt aattaaatac gccagagcaa tggggatcga
    13921 atggtatgtg ctgactgacg gtgacgattc cggcaaacgt tatgcagata cggtaaaaag
    13981 tatggaagag gattttgctc accggctcac gatgttgcca caaaaagata tcgaacattt
    14041 tttctacaaa gcaggcttgc ggaatgtgtt tatacagctt gcaaattggc gttcacaaga
    14101 aaaatatccg gtgtcctaca tcattaaacg agcgattcaa cgaagctcaa agcctgattt
    14161 agccattgca ttagccaatg agatggggca acggggagag cattcaattc caactttatt
    14221 taaacaatta tttgcagatg tgctggcatt gataaacaaa gtatagaata caagcggtta
    14281 aatttgacaa aaaattgcca attttgaccg cttgtttgct tgtgatgaaa accaatcata
    14341 caaaactcta atttatttca agtgcaagct attattttat gcgttatgct tatttggaat
    14401 aaaaaaatcg ggttagttga ttgacatagc attctagacg tctaaaataa ccaaaaataa
    14461 tagttaattg aatgtggata aatagaaaat gattcagctg aaaaatatca gcaaacaatt
    14521 tgaggtaaag ggcaaaaaaa ttaccgctct ggataatgta aacctagaag taccaagagg
    14581 cactatttat ggtgtcattg gggcatcagg ggcaggaaaa agtaccttaa ttcgctgtgt
    14641 aaatttatta gaacgcccaa caatcgggca agtgattgtc gatgggcaag atttaacggc
    14701 aatgtcggat aaagagttga ttcacgctcg ccgtaatatt gcaatgattt tccaacattt
    14761 taatttgctt tcatcacaaa ctgtatttga aaacgtggcg ttatcgttgc gtttaagcaa
    14821 tacgccaaaa gagcaagttg agaagaaagt caatgagctg ttggatttag tggggttaac
    14881 agatcgtaaa gatgtttacc ctgcaaatct ttccggtggg cagaaacagc gtgtagcgat
    14941 tgctcgtgcg ttagccagcg atccacacgt tttgttgtgt gatgaagcga ccagtgcgtt
    15001 agatccggcg actacgcaat ccattttgca gctattaaaa gatattaata aacgtcttgg
    15061 tttgacgatt ttattaatca ctcacgaaat ggaagtggta aaacgcattt gtgaccgagt
    15121 agcagtgatt gataaagggc agttgattga atctggctcg gtaagtgaaa ttttctcgaa
    15181 tccgaaaacc gaattagctc agaaatttat tcaatcgact ttccattttg aattaccgca
    15241 agaatatacc gagcagcttt caagttcgcc gactgaacat agtaagccga ttattaaatt
    15301 tgagtttacc ggacgttcgg tggatgcacc tttgctttca atggcatcga agaaattcgg
    15361 cattgatttt agtattttga tgtcgcaaat tgattatgca ggcggggtca aatttggatt
    15421 tgtaattgca gaagtgagtg gtaatccgga ttccattgca gaggcaaaat tttatttaat
    15481 tgataacaat gtaaaagtag aggtgttagg ctatgtgggc tgattttatg caggagatga
    15541 cgccacagat gtggagctta gtatgggaat ctacttttga aaccgtttat atgggctttg
    15601 tggcaacggc attggcggta gtcatcggtt taccgattgg tttcttggcg tttttaaccg
    15661 gtaaaggcga aattttagaa aatccgagat tacaccaagt gttagatgtc gttattaaca
    15721 tcgggcgttc gattccgttc attattttat tgattatttt gttgccattt actcgcttag
    15781 ttgtgggcac aacattaggc acaacggcag cgattgttcc tttaagtgtt tcggccattc
    15841 cgttttttgc ccgtttaact tcaaatgcgt tgcttgaaat tccgtccggt ttaacagaag
    15901 cggcaaaatc aatgggagca acaaattggc aggtagtgac aaaattttat ttaccggagt
    15961 cattaccgat tttgattaat ggcattacgc taacgctggt tgctttaatt ggctactcag
    16021 caatggcggg ggctgttggt ggcggcggtt taggcaattt agcgattagc tatggcgaac
    16081 accgtaatat ggtgtatgtg aaatggattg ctaccattat tattgttgcg attgtgatga
    16141 ttagccaaaa attgggtgat catttagcaa aacgttacga tcatcgttaa ttttatttaa
    16201 aaagaggttt ctatgagttt caagaaaatt ttaggcgttg cattggtttc tgcattagca
    16261 ttaaccgctt gtaaagaaga gaaaaaggca gaatctaccg ctgctccggc agctcaagct
    16321 ccggctaaaa tcaaagtagg ggtaatgtca ggccctgagc ataccgttgc agaacgtgca
    16381 gcacagattg caaaagaaaa atatggttta gaagttgagt tcgttttatt taacgactac
    16441 gctttaccga atactgcagt aagtaaaggt gatttagatg caaacgcatt ccaacacaaa
    16501 ccatatttag ataaagacag ccaatcaaaa ggtttaaaca acttagtgat tgtgggtaac
    16561 acctttgttt atccgttagc gggctactct aaaaaagtga aaaatgtgtc tgagttagca
    16621 gaaggtgcgg taattgcagt accaaatgat ccttcaaact tagctcgtgc tttgatttta
    16681 ttagaaaaac aggggttaat taaattaaaa gataatacca atttattctc aacttcagtg
    16741 gatattatcg aaaatccgaa aaacttaaaa attaaagaag tggatacttc aattgccgca
    16801 aaagcgttag atgacgtaga tttagcggtg gtaaataaca cttatgccgg gcaggtaggc
    16861 ttaaataccc aagatcacgg tgtatttgtt gagtctaaag attcaccgta tgtgaatatt
    16921 attgtggctc gccaagacaa taaagatgca gctaatgtac aaaactttat taaatcttac
    16981 caaaccgaag aagtgtacca agaagcacaa aaacacttta aagatggtgt agtaaaaggt
    17041 tggtaattta gctgattttt acttaaatgg cgattaagcg ctaggttaat cgccattttc
    17101 atctttaaaa tataggaagg agcaaacaat gaactttaaa aaattattag gtgtggcgtt
    17161 agtatctgcc ttagcactta ctgcgtgtaa agatgaaaaa gcacaagcac ctgctacaac
    17221 agctaaaact gaaaacaaag ccccattaaa agtgggtgtg atgaccggcc ctgaagccca
    17281 aatgaccgaa gtggcagtga aaattgcaaa agagaaatat ggcttagatg tagagttagt
    17341 gcagtttact gaatacactc aaccaaatgc cgcacttcat tctaaagatt tagatgctaa
    17401 cgcgttccaa acggtgcctt atttagagca agaagtgaaa gatcgtggtt ataaattagc
    17461 gattatcggc aatacgctag tatggccaat cgcggcttat tctaaaaaaa ttaaaaacat
    17521 ttccgagtta aaagacggag cgactgttgc gattccaaac aatgcaagta atactgctcg
    17581 tgcgttatta ttgcttcaag ctcacggttt attgaaatta aaagatccga aaaatgtgtt
    17641 tgctaccgaa aacgatatta tcgaaaaccc gaaaaatatc aaaatcgtac aggcggatac
    17701 ctcactttta acccgtatgt tagatgatgt agaacttgcg gtaatcaaca acacttacgc
    17761 aggtcaagct gggttaagtc cggataaaga cggtattatt gtggaatcta aagattcacc
    17821 gtatgtgaat ttagtggtaa gtcgtgaaga taataaagat gacccacgct tacaaacttt
    17881 tgtgaagtca ttccaaaccg aagaagtatt ccaagaagcg ttaaaattat ttaacggtgg
    17941 tgtggtgaaa ggttggtaat cagttggacg gcatattctg ccgtcctttt cttaaaagga
    18001 gaaacagata atgaaaataa tgaaattagc cggtgcagtt gcaattttct cgcttttttt
    18061 aaccgcttgt aatgataaag ccgaaaagtt gaaagtcggt gtgatttccg gccctgaaca
    18121 taaggtaatg gaagtggcgg caaaaattgc aaaggaaaaa tataaccgtg atgttgaatt
    18181 agtggtattt accgattatg ccacgcctaa tgcagcttta gataaaggcg atcttgattt
    18241 gaatgctttc cagcataaac cttatttaga taaccaaatt caggaaaaag gctataaatt
    18301 agtgccggtc ggcaatactt ttgtttatcc gattgcggct tattccaaaa aaattaaatc
    18361 gctggcagag ttgaaagatg gtgatactat tgcagtgcct aatgatccga ctaatttagc
    18421 ccgtgcttta attttattgg aaaaacaaga tttaattaag ctgcgagcag atgcaggctt
    18481 aaaagcaacc agtgtggata ttattgaaaa ccctcgtaaa ttggtgatcc aagaaattga
    18541 agcaccatta ttgcctcgaa cgttggacga tgttgccttt tcgattatta atactaccta
    18601 cgcagggcaa aacggtttaa cgccaaccaa agacggaata ttcgttgaag acaaggattc
    18661 gccttatgtg aatttaattg ttgcccgtga aaataaccaa cattctgaag ccgtaaaaga
    18721 tttggtgaaa gcctaccaaa cagaagaggt gtataacaaa gcgaatgaag agtttaaagg
    18781 ggcgatgata aaaggctggt aattgaagat aaataaggca tagattccta tgccttactt
    18841 tttatgttac agacctgctc cggctcttaa tgcttcggct ttgtcagttt tttcccaagg
    18901 aaaatgttta cgaccgaagt gtccgtaggc agcggtttca cggtagattg gtttgattaa
    18961 atctaacatt ttgattaagc catacgggcg taagtcaaag ttttggtaga ttaatttcac
    19021 aagtatttcg ttgctcactt tacctgtgcc gaaggtttcg accataattg atgttgggtc
    19081 agccaccccg atagcataag aaagttggat ctcacagcga tcggctaagc ctgcggcaac
    19141 gatatttttt gcgacataac gagcagcata agcagcagag cgatccactt ttgacgggtc
    19201 tttaccagag aatgcaccac caccgtggcg agccgcacca ccgtaggtat ctacaatgat
    19261 tttacgcccg gttaaaccac agtcacccat tggaccgcca atcacaaaac gaccggttgg
    19321 gttgatgaaa tatttggtgt tttggctgag ccattcgctt ggtagtaccg gtttgatgat
    19381 ctcttccatc accccttcaa ttaactcttt ttgcgaaata tgctctgcgt gttgtgtaga
    19441 aagcactacg gcatcaatgc cgataatttt attgttctca taagcaaatg ttaattggct
    19501 tttagcgtca gggcgtaacc aatcgagttt gcccgattta cgcacttttg actgctgttc
    19561 cattaagcgg tgtgcgtaag taattggagc cggcattaac acctcggttt cattggtagc
    19621 gtagccaaac ataatccctt ggtcgcccgc accttgctct aacggatcgg cacggtcaac
    19681 gccctggttg atgtccggag attgtttacc aatcgcattt aataccgcac aagagtgagc
    19741 atcaaagccc atatcagagt gagtatagcc gatgtcgcaa atcacttggc gggttaagtt
    19801 ttcaatatcc acccacgcag aggtagtgat ttctccccct actaatgcca taccggtttt
    19861 cacataagtt tcacaagcaa cgcgtgcttt agggtcttgt tttaaaattt catctaatac
    19921 cgcgtctgaa atttggtctg cgattttatc cggatgccct tctgaaaccg attcagaagt
    19981 aaataaatta attgccattt gtattcctct ctatcttaaa tatggattat taatagtagg
    20041 gacgggtcca gtgcccgccc ataaattata taaaatgttt ggacaggcac aggaccggtc
    20101 cctataaaat ttgtttggaa gtgtttccgt ctagacgtct ataatatatt ttttgaacgt
    20161 tttaggcaaa tagaatttgt ttatttggct aaatatgccc ttaaaccagc caacgcattt
    20221 ttggcatctt ctacccctaa atcgtacatt gcttgtattt tatttacatc cgtttcaagg
    20281 cgactgattt tgactgttct gcttggacga atcacaaaaa tctgttgttt ttcattgagt
    20341 tgaataatct gctcaacggc ttgattatat tccgcatagc ggttttccca gcgttgcact
    20401 aatttcggat attttttata aaaacgttta aacagccaca tcgagcttgg tttcttacgg
    20461 tattcaagtg ggcgagtaag caccacgata attttgtcat atcccatttc aataaatttc
    20521 tgcaccggaa tactgtctga cacaccaccg tctaaatatt ttttaccctc aatttcgact
    20581 attttggata caatcggcat tgaggaagta gctcgaaagg cttccatttg ctcgaacaca
    20641 ttgtcaattt tgatgtattc gggctcaccg gtttcgacat tggttacagt aacccaaaag
    20701 tccataccgg aatcctcaaa ggcttgttgg tcaaacggat ccagtttgga agggagttca
    20761 tagtaagcaa aatcccgatt aacgatattg ccggtggtaa gcaagctgtg taaccccata
    20821 taccgcttat ctttagcgta ttttttgttg tatcgcaacg ccctaccttt ttgttttgaa
    20881 ggcaaattca cgccaaataa cgcaccggct gaaacaccga ttgctccatc tatatgaata
    20941 tgttcatcta aaaatacatc taacacgccg gcagtaaaaa tacctcgcaa accaccgcct
    21001 tccagcacta atccaacttt catatcattc tccctgtaat ttgtgtatta taacccgaat
    21061 tatcttgcta ggagaaatca caatggctga tgcagaattt atggatttcc tgttagatca
    21121 actaagcccg atttccggtt tgcgttcgaa aaaaatgttt ggtgaatatt gcttgttttt
    21181 tgataataaa attgtcgcta ttatcagcaa agattatcgc atttttgtca aagctaatcc
    21241 gcaaaccttg ccgttattct tagctgaaaa tgccgaacaa tttcactatt ttgctaaagg
    21301 aaaagtgcaa aaaatgcact actggagcat tccggaatta gcgattgaag aagccgatga
    21361 actggtcaaa tggattcggc taggcttaca agcggtgtaa tttagcgaaa attttgtaaa
    21421 aaaacgctaa aatatgcccg cttgttaggg ggggggacct aatatttcta tactttaaga
    21481 ttttatattt atgaaccaaa aaaaattagt ttctttgatt gtcgttattg tgttggcaat
    21541 catttctcaa atttttagct tttttgataa aaaagagcct tcaaaagcac aagaaaaatc
    21601 gacccagagt agtcagtctc atcaagtttc aacttcatca ctagggaact atgatgtgca
    21661 gatgaaaaac gaccgtttga aacagcatat tgtagatacc gattattaca ccttagcgtt
    21721 gtcgtggtcg ccggcgtttt gccaaaaaca aaagcgaaat aatcacggta aaattccgtc
    21781 tcatttggaa tatcaatgtg gtggctcagc ggattttggt tgggttattc acggcttatg
    21841 gccgcaaagt ggcaaggcaa gaagtgttga tgaacaccct cgttattgcc aaggcgattt
    21901 gccgatggtg gcagagcaga cgattaagca atatttacct gaatcgccgg gggcaacttt
    21961 gttgcaaggc gaatgggaaa aacacggtgc ttgtgccttt aaccaagcgg atgattactt
    22021 cgccaaacaa aaagagctat ttaatcagct caaattaccg gataccgaaa tgtctaaatt
    22081 agcactgttt aactggatgc gagccaataa ccctcatttg caaaatgtct atttaggggg
    22141 tagcaaagat gagctgtata tttgctatga taaagcattt caaccaatgg attgcccacg
    22201 ctaatggcag atcttcgcca actgaaaatg caggttcagc gccaattaaa gcgtgatctt
    22261 gaacgtgcaa atcactattt taataccact tttacgccac caagtattag ctatgcggtg
    22321 cgtggcgtaa aagccggtgt ggcttatctt gaacgcaacg aagtacggtt taatcctgtg
    22381 ttattgcaag aaaatgaaca ggcatttatc cgccaagttg tgccgcacga actggctcat
    22441 atcttggttt atcaacattt tgggcgggta caatctcatg gtaaagagtg gaaaatgatg
    22501 atggaaaccg tactgggtgt gccggcggaa atttaccatt gttttgatac ccaaagtgtg
    22561 caacagcaat ttagttacca atgtgcctgc cagactcacc agctttcgat tcgccgacac
    22621 aatgccgtga tgcgagataa aaaaagctat atttgccgtt tatgtaaaac tcaactccat
    22681 tttgtagaaa aaagttaatg tggagaaaag ttaagagaat gttacgattt agctagacat
    22741 tcctgtttaa acgcctacaa tttgccgtag tttttatttt taattttatt tccggagtat
    22801 ttatggaaac aattgtaatt gtaggtggcg gtgcaggcgg tttggagctt gcaacctatc
    22861 taggcaacaa attagggcgt aaacaaaagg caaaagtggt gctgattgac cgcaatgcaa
    22921 cgcatttatg gaaaccactg ttgcacgagg tggcaaccgg tactattgat gagggaactg
    22981 atgcgttaag ctatcgggct cacgctaaaa atcatagttt tgaatttcag caaggtacgc
    23041 tggtggcggt agatagagag aagaaaacgg tttcactcgc cccgatttat aatgatcaaa
    23101 accaacttct cgttaaagaa cgccatatca gttatgacaa attagtgatc gcgatcggca
    23161 gtaaatccaa tgattttggc accaaagggg ttgcagaaaa ttgcattttc ttagatggct
    23221 cagagcaagc aaaagatttc caaaaacgaa tgatggagct gtttttacgt ttttcacata
    23281 gtgaaaataa agatgtaaaa attgcgattg tggggggggg agcaacaggt attgagcttt
    23341 cagcggagct ttaccacgtg gtgaaaaatt taaattctta cggctttggt aaattaaacc
    23401 gtgccagctt gaaagtcact ttaattgagg caggccctcg tttgattccg gcattaccgg
    23461 agaaagtgtc ggtttctgct ttccacgaat tgaaaaaagc gggtgtttcg gtgcgtttag
    23521 gtacgatgat taccgaagct cgtccagatg ggctaatgac ccgtttaggt gagaaaattg
    23581 aggcggatat tatggtttgg gcggctggcg tgaaagcccc tgaaattacc cgtgaatttg
    23641 gttttgaaac taaccgcttg aaccaaattg agattaaaga cacgctacaa accaccgttg
    23701 atgagtcagt gtttgtcatt ggcgattgtg catcattaat tcaagatggc aagccaattc
    23761 cacccagagc acaagcagcc caccaaatgg caacccgatg tggtaaaaat attgtggcat
    23821 tgatagaagg aaaagagatg aagccgtttc gatttaacga taaaggctca ctgctttcct
    23881 tctcaaaatt cggcacggtg ggtaatttaa tggggaattt agtgagcggt gatatgttta
    23941 ttgaaggtaa aattgcccgc ttggcttacc tctcgcttta tcgaatgcac caagtggcat
    24001 tacacggctg tgtcaaaacc ggcttgattg tgttggtagg gcaaattaac cgtttcttaa
    24061 gaccaacaat gaaactacat taaacaaaaa tccgcatcaa atgatgcgga ttttttatgg
    24121 caaaataaca agcggttatt ttcttgccta tttttgcaaa tactcacgcc tagtttgcta
    24181 atttaatttc cgccaaccat ttatcaatta agcgtttgcc ctcttcgctg gaacctgctt
    24241 tttggtaatc aatttccaca aagtctaacg cttcggcttt ggttgattgt ggagcaactt
    24301 cggcgttgat gtttgttggg gtttggtaaa caccgtgttt tttccaagga atttcctgtg
    24361 cttcttttga aagcacccaa tccataaaga gtttggcgtt atctaaatta cgggcatttt
    24421 tgataatgct gacaccgcct aacgcatagc ccactttacc ttccggaata atggcttcaa
    24481 taggcgcacc tttttctttt tcagtggcat aactatgtac aaagcctacc gtaaccgcac
    24541 tttcaccacg agcaagattg ctggtgacta gggtgctttt cacatattgc gaaacgttat
    24601 tgttgagttt tttcagataa tcaaaggttt tctcttcgcc ccataaggtt gaaagagtgg
    24661 tcataaacgt ataagtcgtg ccggagctac gaggatcagg cagttgtact tcacctttta
    24721 agcgaggatc tgataaatct tcccattttt tcggtgcctc aatgcctagt ttggcgagtt
    24781 tttcggtatt cacgcctaac cctaatacaa gcatataaac gatagaggta aatttacctt
    24841 gttcactttc aactaaggat ttaaattgtg gcagaatttc agcttgtttt ggtgaacggt
    24901 aggcttccag taagcctaat tcgcctgctt gaaagtgagg ttcaatcgtg ccgccatacc
    24961 aaatatctgc ctgagggttc gatgcttccg cttttacttt tccgaaaatt gtaccggttc
    25021 cgccgtgaat gaatttagtt tcgacattat atttgtgtga aaattgcttg gtcatttctt
    25081 cacaaacatt attttgtacc gagcaataaa cagttaaacg accttctgct tgtgctgctt
    25141 gagctgataa gaaaatgcca gaggcgatta agatcgattt taatgagatt aatttgagta
    25201 cgttcatcac tttcctgaaa acataaaata aaaggtagtg aagtctagca tttcaaagcg
    25261 ctggttgaaa atagttaatt gcaatgaagt agggcaattg tgcctattac tttaatattt
    25321 accaactatt tgcaagtttt agcaaaaaat aaccgcttgt agtagctctt gctattttgt
    25381 caaaattcag aataataaat gcctttagtc taatgttaaa ttttagttat ggaaaatagt
    25441 tggaaatatg cttttaaatt aatcacgccg atttttatgg gctattttgc ggcaggggtt
    25501 gcttacggaa tgcttgccac caatgccgga atgcctgcgt ggtttacgat tgtaatgagt
    25561 tttaccgtgg tatcggggac ggcacaatat gcagcgattc cattttttgt ctccggtgtt
    25621 ggggcggtgt cggtctttct cagtacgctt ttaatgagtc tacgttttag tttttacacc
    25681 ttaaatatga tggagcataa gccgatatcc aaagcgaaaa gtctggtcgc tattgcaggt
    25741 ttaactgatg aaggctttgc ggtgttatct tcattaccga aagagcaaaa gcaagcatta
    25801 ttctttaaaa tcgctgtgct atgtgtggct tattggacat tttccacgat tgtcggtgtg
    25861 ttgttaggcg attcagtggc gaactatatt ccgcatttgg attttgctct gccttgtttg
    25921 tttgcaattt tagcctatga gcaatacaaa aaccaaaaac aatggaaacc gattgtgatt
    25981 gcgttaatcg gatttttact tgctcgtcag attaccgaaa ccagcgtgtt attggtggca
    26041 attttagtag cgattgtcat tgtggcttta ttacctcaat cttcttcaat caaactagag
    26101 aaaggagtag aaaatgagca caaatgatac tttgataatg tttgcagcat tagtgctcgg
    26161 ctcgcaaatt tgtcgttttt tgccggaatt tttaccgaaa aaggtgttat cttcgcccat
    26221 tttgcaaaaa ttaaacaaaa tgttaccgct tgtgattatg cttttattgc ttttaacgag
    26281 cctaaacttt cctaaaaacg gggaaggctt taacttaata ttggcacaaa ttctggcttt
    26341 aataggcgta ttaggtagct atgtttggct taaaaatacc tttttaagcg tagcgttggg
    26401 gattttcggt gtgaatgtat ttttatccct gttaggataa ataccaaagg tcattttata
    26461 ggagcgaaac accttcgctc aatcattaac agatgtgggg cgaaaaattt ttcgcccctt
    26521 atttatcaca agcggtcttt ttctttcaat tttttgcaaa ttaaatcgct aaatcaaacg
    26581 catagaaggc aactaaaata atcgcaataa ttactgtacc taggtttaat ttattggctt
    26641 cgcctgaaat taagcgacca atcacaaggg tggcgaaacc tagcataatg cctgtcacaa
    26701 tgttggcggt taatacgatg aacaccgcac agactaaacc tgacattgca cctacaaaat
    26761 cgctgaaatc taatttagag acattactta gcattaataa gcccacatac attaatgccg
    26821 gtgcggtggc atagcttggt actaagaatg caagaggttg gaagaacagc ataaataaga
    26881 aaccgatacc aaccactaca gcggttaaac ctgttttacc gccaacggct gtacctgctg
    26941 ccgattcaat atacactgcc gctggtgctg taccaaataa gcccgataaa attgatccga
    27001 atgagtcaga agttagggct ttatcgccat tgataatttg tccgtcttta tctaataaac
    27061 cggcttgccc tgcaaccgca cggatagtac ctgttgcatc aaaaatagcg gtcattacta
    27121 acgcaaacac taccggtaaa atggcggtat ttaatgctcc cataatatca agatttagga
    27181 attgcgaatt ttcaccaaaa ctcggcattt tgaaaaagcc tgtgtatttt acgttagggt
    27241 caaaaattaa acctacgatg gtaatagcaa taatgaccca taaaatactg ccttttactt
    27301 tcagcttttc taacccgata atggcggcta gaccgattaa tgacactaaa accggaaatg
    27361 aagtgaagtc ccctaattta accggaatat ccataccgct attgaccact aatttaacgt
    27421 tagtggcggc aataatcagt aagaataaac caataccaat tccagcaccg tgggcaatgc
    27481 tgcttggcaa attacgtaaa atccaagtac gaataccggt agcagaaatc aaggtaaata
    27541 ctacgcccat taagaaaatc gccccgagtg caacaggaat agaaacttgt tgccctaata
    27601 ctaagctaaa ggcagtaaaa gcagtaagtg aaatcgcaca accgattgcc attggggcat
    27661 ttgcccataa accgattaag atagagccga gacctgaaac taaacaggtg gcaataaata
    27721 ccgattcggc aggaaagcct gcttggctta gcattcccgg cacaacgatg acggaataaa
    27781 ccatggctaa aaaggtagtt aaaccggcga tgatttcttg acgagcgttt gaaccacgct
    27841 cctcaaattt aaataacgac ataagaacct caaaagaaga aaatgaaagg ggaaatttta
    27901 ggatgcggaa ttttacagaa atttaaaata attagcaaac gtttgcgtaa aaagtgaaag
    27961 aaaagcagga ataaatcctg cttttgtttg atggttagta atcgatgaaa gcgtcttgat
    28021 ctgccccttc cttttcaact ttaggctgaa ccatatgttc acgttttagc ccaagttgta
    28081 gtgccacacc aattgcaatg tagatggatg aataagtacc gaaaccgata ccgatcaata
    28141 atgcaagtga gaaactatga agcgttggac cacctagata gaataaggct agtaccacaa
    28201 agagggtggt tactgatgtc attaaagtac gcgaaagtgt ttggctcaag gaaatatcga
    28261 taatttcaat tgagctggag cgacgaactt tagaaaagtt ttcacgtaca cggtcaaaca
    28321 ccacaattga gtcatttaac gagtaaccga caacagataa aatcgctgct acaaaggtca
    28381 agtcaatttc aatctgtaag aaagagaaga ttccgatcgt cactaataca tcgtgaaata
    28441 aagccacaat accgcctacc gctaaacgcc actcaaaacg tgttcccacg taaataagta
    28501 gcatagcaag tgttgccaaa gtggcataaa tagccccttg ggttagctct tcccccacgt
    28561 ttgggccaac gaattcaatg ctcttgatag tcgcattcgg atctaatttt tgatggatca
    28621 tctccatcac tttattccca acagacatat caccggcact ggcggcaagt cggatcatta
    28681 aatctttttg actgcctgtg gtttgcacta aggcattgcc gtagccgcta ttttcaagct
    28741 ccgtacgcag ttttgctaaa tcagcaggtt gtgaaaattg agtttcgatt actgtcccgc
    28801 cggtaaaatc taacccccag ttaaagcctt ttgtcgcaat agtaaaaatg cataaagcag
    28861 ttacaatcag cgaaaaaatg aatccgacat agcggtattt cataaagggg attaatttat
    28921 aaggcagttt aatttctgct acatcttgtt gtacattttc aatagccatt tttccacctt
    28981 aaatccaaag tttcttcacg cgtttgccac cgtaaaccca gtttacaagc attcgagtac
    29041 ctgtaattgc ggtaaacata gaaataatta cccctaatgc aagcgttacc gcaaagcctt
    29101 ttaccggacc tgtacctaca ccataaagca caagagaagt caaaatagtg gtgaggttgg
    29161 agtcaaaaat acttgagaat gcgccattat aaccttcgtg gattgcttgt tgaattgggc
    29221 gaccgttacg aatctcttct ttgatccgct cgtagattag tacgttggca tcaactgaca
    29281 tacccacagc aagtacgata ccggcaattc ccggcatagt aagggttgca ccgattaatg
    29341 acattaaacc aatcgttaag atcatattca caatcaaggc aagagaggca aatataccaa
    29401 atactttata aaaggctaga cagaacagga tcgttaagcc taagcctaaa atactagctt
    29461 ccataccttg tttaacatta tctgccccaa gagaagcacc gatagtacgc tcttccacaa
    29521 tcacgattgg agcaatcaac gcacctgaac gtaataatac cgcaaggttt tgagcttccg
    29581 ctggtgaatt aatccctgta atctggaatt gattacctaa acgggtttga atggttgcaa
    29641 cgttaattac ctcttggtgt ttttctaaaa tgactttacc gttagcatct ttacgacctg
    29701 aatctttaaa ttcggtataa agtgttgcca tcggtttttg gattgccatt ttagtaattt
    29761 cacccatcat ctcgccgcct tcggtatcga gtcggatact cacttgcggc aagccacgct
    29821 catcagtgcc tgaggttgca tcaataatat gttcaccccc taacgaaggt ttacggcgta
    29881 atacaactgg ctcgccatca cgggtgtttt gcagtcctga atcagccggc acaatgcctt
    29941 tcgccgcaga ggccacattg gcttcggtat tgactaaccg gaactcaagg gttgcagttg
    30001 cccctaaaag ctctttggca cgagcggtat cttgcacacc cggtaattca actacgatac
    30061 gatctgcacc ttgacgctga atggtcggct cagaaacgcc caattcctca acacgtttac
    30121 gcaaaataga aaggttttgt tcgattgcca tcgtgcgaga ttcagaaaga gcttgtgctg
    30181 atggcgttaa ggtgacttta ttatcattta ccaaaatatc aagcgttggg tgagagagac
    30241 gcactaaacg cactgctttt tcggcggtat cgttatcggc aaattcaacc tcagttgcaa
    30301 aattttcgcc ttttttgacc gcttgatatt gcaatttttc tttacggaaa tcactacgca
    30361 ggctgtcttg caaagtgtct tgttgttttg caagcgccgt gttcatatcc acttccatta
    30421 agaaacgaac accgccaagc aagtccaagc ctcgcttcat cgggctaccg ccaatgtcag
    30481 acaaccactg tggcgttgct ggtgcaaggt ttaaggcaac agagtagtta ttccccaatg
    30541 cttctgagat tttttctttg gcaggcaatt gctgttcgct gctttcgaga cgaaccaaaa
    30601 tcgagccatt ttctaacacg gcagatttcg gctgaatatt cattgctgaa agtgtggatt
    30661 gcacttgaga cagtgtctca ggtgtggctt gttgcccacg agtaccggaa atttgtaccg
    30721 aaggatcatc gccatataaa tttggaaggg catataaagc accaatggcg atcacgaaga
    30781 tcaccattaa attcttccat agagggaaac ggtttaacac aataactccc cgaatgttaa
    30841 agttggataa gagggttgat taaagtgatt ttaatgaacc ttttggtaac accgcaacaa
    30901 cgaaatcacg tttgatggtc acttcagttg tgtcatttaa tgcaatcacg atgttatcgt
    30961 tatcagcggt cactttggta attttaccga ttaaaccacc gctggttaat acttcatcgc
    31021 cttttgtcaa gcttgccagt aaatcacgtt gttgtttttg gcgttttgcc tgaggacgat
    31081 aaatcataaa atagaaaatt gcaccgaaaa taatcaggat aaagatcatt tccattccgc
    31141 caccttgttg cataaaaact ccttaaatgt ttgagtggta taaaaataag tgttataaaa
    31201 aacgcctgtt aaaataccat aaattcaatg aattaacgag tagaaaaatt catcgaatgc
    31261 ttttctttta aacaaaaatt tgagtagaat cagcactttt agtttaggat taggttcttg
    31321 gcgtgttctt gcgctgacac aataggagaa aaaatgaaaa aattattcgc tcaagcggtt
    31381 atttttgggg ctttttttgc aagttccgct tttgctcaca atgtgcaatt aaatcaagca
    31441 ttacctgctg tttcggttgc aaaagacggg gaattggcag tggcaggtgg aaaggttagc
    31501 tataaaaatt ggcattcatc atctctggca ggtaaagtcc gtgttattca tcattttgcc
    31561 ggtagaagtt cggtgaaaga aaaaaatgaa gatttgatga cagcaattaa aaatgccggt
    31621 tttgatcgct cgaaatacca aacggtgacg attgtaaatg ctgatgatgc gattgtcggc
    31681 acaggggtat ttgtgaaaaa tagtgtggaa aacggcaaac ttgacaatcc tcacagccaa
    31741 gtagtgttag accagcaagg cagtgtgaaa aaagcgtggg gcttaaaaga gaaagagagc
    31801 tttattgcag tgctggataa atcgggtaag gtacaattta cctctgaggg caaactctct
    31861 gcaaaacaga ttcaagaagt gattgggttg gtgaaaacat taacgcaata accagtgttt
    31921 ttatgggcgg attttgtatc cgcccatcat tctagataat aaatcgataa cttatcgtgt
    31981 gatgatactc ttctcctgct tttgttatcc cgccaaattg gagtaattca ggctggttta
    32041 gtgaatttgg gaaaaactca ggctctaatg ctacaccagc gtaatcttca tattcgcctt
    32101 tagtcaaatt aggttgtcct tttagccagt tgccggtgta aagttgtaat gctggcatgg
    32161 aggtgcggag ttccattttt aagtcttcca cggctaaaca agcggtcgga ttttcactat
    32221 tttttgcaag atgaaaggag tgatcgtaac cttttaccgc tttttggtcg tcatcagcca
    32281 ataaatcttg cccaattttt ttagcattgc ggaagtcaaa actggtactc tccacttttt
    32341 tcagtggagc attaggaata ccgctggcat caaccggtaa gtatccgtct gcattaatta
    32401 tcagctcgtg atctaaaatc gtctctgaac cttgcaaatt aaaataggcg tgattagtta
    32461 agcaaagcgg tgtatcttgg ttagcaacgg catcaaagct gatttgaagc tcattctctg
    32521 ttaagcgata ctccacaaaa gctttcactt cgccgccaaa tccttcctcg ccatctgcaa
    32581 aaaaataact aaatttgacc gcttgttcgc tttggctttc aagttgccac actattttat
    32641 ctgccccaag ctcgccaccg tggagattat gttcaccgtt atttttagcg agctggtagg
    32701 ttttgccgtt taagcgatat tcggcattgg caatgcggtt agcgtaacgc ccaatggtcg
    32761 ctccaaagaa agcggtctgt ttttgccaat tttttgcaga cgtggtgact aatacttccc
    32821 gttcctcgtt cggcattttg acaatgcacg aaagccaaga agccccaaca tcagaaaggg
    32881 taatgcgtaa aaacgcattt tcaagggtga ataatttcat cggttgacct taattaccta
    32941 gcacggcata gccgtactag gttaagcata attcagccct gctagggctg aggttattta
    33001 ttttagagta gcggagctac ttccttatgc ttaacccggt acgctttagc gtgccgggca
    33061 ttctcgcacc ccatcggagg cagtacaaac gtggaaggtt tctttaatgc cggtttgctt
    33121 ttcgtaattg ttagcaacgg cttggcggag atcttccact ttgtcatttg gcactaggca
    33181 cacgacacaa ccgccaaagc cgccgccagt cattctggct ccgccgtttt taccgatagc
    33241 ttgttgggcg atttcggcta agcaatccac ttcagggcag gtgatttcaa aatcatcacg
    33301 cattgagtcg tgagattgag ccatcaactc cccgagtttg accatatcat tcgcttttaa
    33361 ggcctctact gcttccagaa ctcgttgatt ttcgctgatg atatgttttg ctcgtttata
    33421 cgccagctca ttctcttcac taagttctga ggctcgttca ataaattgtt ccgctgtgac
    33481 atcacgcaat tttgctttgc cgaagaagtg ggcggcaaat tcgcactgtt cacggcgact
    33541 gttgtattcg ccggtaacca agtcgtgttt tacgttggag ttaataatcg caatcgaata
    33601 gccttgtggc acaggggttg gggtgatttc taaactacgg cagtcgatca tcactaaatg
    33661 atcttgttgc ccgagagcgg aggtgagctg atccatattg ccgcagttgc agccgacaaa
    33721 tttattctca gcctcttgcc cgattaatgc gatttgcggt aaagaaagcg gtaaatcgcc
    33781 gagtaattga gcggttttac caatcgacac ttccaatgcg gcggaagaac ttaaacctga
    33841 tgacatcggc acatcgctgg taatggctaa atctgctcct tgtttgaatt cggggtgttt
    33901 ggcttgaata aatttcacca cgccacgcac ataattcgcc catttttgct cgcttggctc
    33961 aatcgcctgg cttaaatcaa attcatcttg ttggttgaga tcaatggcga acacccgcca
    34021 tttgttgtca ctacgtttgg caaagctaac cgctgtgccg taattgatgg cacaaggcat
    34081 tacaaaccca tcgttgtaat cagtatgttc gccgataata ttcactctgc ccggggcaaa
    34141 taccgtgcgt tctgctttat aaccaaaatg ttgttcaaat tgttgcaaag cgatttcttg
    34201 tggtttcatt tcaattcctt atttatcttt atagtgtttg gtatcactta ctgcatttaa
    34261 acgttcggca gcttgttccg gggttaaatc acgttggctt tctgccatca tttcataacc
    34321 gaccataaat ttacgcactg ttgccgaacg caagagcggc ggatagaagt gagcgtgtaa
    34381 ttgccagtga gcattttcct tgccgttaaa cggagcgaag tgaaagccca ttgaataagg
    34441 aaagctgatg ttaaacagat tgtcgtaacg ggtggtgagc tttttcaatg caagggctaa
    34501 atccgctttt tccgcttcgt ttaaatcggt aatggatttg aactgcttgg ctttcggcaa
    34561 cagcaaggtt tcaaacggcc aagccgccca gtaaggcaca accgcaatcc aatcttcggt
    34621 ttctgccaca attcgctctt gtttgtctaa ttcacgttgt gcgtagtcaa gcaacagtgg
    34681 cgagccatat tgagcaaaat atttcgcttg gcattcgtct tcaatcgcaa tttcattagg
    34741 tagaaaatta cttgcccaaa tttgcccgtg tgggtgaggg ttagaacacc ccatcattga
    34801 gcctttgttc tcaaaaattt gcacccactg ataatgctct ttcagctcat tcgcttgctc
    34861 ttgccaaact gttaccacat cagtaatttc ctcgatggaa agttgcggta aggttttact
    34921 atgatcaggc gaaaaacaga tcacacggct ttcgccttgt gtatgagaaa tctgaaacag
    34981 cggatcatca ttcggtattg gtgccggtgt gtctggtagc agggcagaga agtcgttttt
    35041 aaacacaaac ggcttggtgt aattcgggtt ttgttcgccg gtaatccgct tattgccggg
    35101 gcagaggtaa caacttgggt cgtagctcgg tttttcatct tgcacgattt cttcttgttg
    35161 cccttgccac gggcgttttg cccgatgcgg agagactaaa atccattgat tttttaatgg
    35221 attaaaacga cgatgtgggt gatcgttgag gacaaattcg ctcatataaa actcctcgaa
    35281 attagttatg taaagagtat agcgaaagtc agacaaaatg actgtgacat agctcacaaa
    35341 ataatgatgt caagcggtca aatttcagaa aaattttgca agttttcctc cattttgcga
    35401 tttaaggtag cttacgtgga attgaatgtg gcttttggta gaatagatga atatgcaaga
    35461 tattaagaca aaaatagatg gaaagactga ataaatttga tgcttggtta atgaatcata
    35521 aacctaatgc taggttaagc ggagcgagtc gtttgttgac agagttttgg ttctttgggt
    35581 taaaagaagc tagagcctgt ttatttgcgg gattattttt tattgcgatg ttttcggtac
    35641 caaaaacggg attatggggc ttacctcgtt atgatatttt gctgattttt gccatagtgg
    35701 tgcaaattgc aatggtgaaa ctggggctgg aaacgtggga cgagctaaaa gcaataagcc
    35761 tatttcattt ggttggtttt gtgttagaag tctttaaaac atcgagtaat attcaatctt
    35821 gggcatatcc ggattttgcc tatactaaat tgttcaatgt gccattattt actggtttta
    35881 tgtatgcagc agttggttct tacattatcc aagcgtggcg gttgtttgat ttgaaaatta
    35941 aaagccacct gccctattgg ttagccactt taacggcact gatgatttac ctgaatttct
    36001 ttacgcatca ttacattggg gattaccgtt ggtatattgc cgcttttgca ttagggctgt
    36061 atgcacgtac ttttgtattt ttcacccctt atgacattac acgaaaaatg ccactgctgc
    36121 tttctttctt cctgataggt tttttcattt ggttggcgga aaatatcggt acgtttgccg
    36181 gaatttggcg ctacccgaat cagtttgggg cttggtctat ggtgcatatg agcaagtgga
    36241 gtgcttgggc gttattggtg atgatgactt ttaccatcat tgtgcattta aagcatatca
    36301 agcaaacagt cagagtctcg agcgattaac aagctgtggg ttttggcgaa aattttactc
    36361 atcagttatt ttcagtggaa ttaggggcaa ataataattt gcccctatat caaattatgg
    36421 attttcccct tccacatcaa taatcatcac ttccgactgt gagcctaacc gcatcggcac
    36481 gccccagaat ccgtagccgg aggtgacaaa ataatgcccg aagccgattt tttcatagcc
    36541 gtaatgtaat cgatagatca gtttggtaat aatacttgca gggaacactt gccctttgtg
    36601 agcgtgtcct gaaacttgaa tatcaatcgg caatttagca tgttgctcaa tttcagtcgg
    36661 gcggtggtca agcaaaatta ccggtagttt agtgttcacg ttttgtaaaa gctgttcggc
    36721 agaaggtcga tttttgacta aatcatcatt acgcccaata agggtaaatt ttccgttaat
    36781 ttcggccgtt tgatcccata aaacagtaat accggcgtcg gtaatttctt ttgcaatcgt
    36841 ttcttgagcc ccaaaaaagt cgtgattgcc aagggtagca tacacgccaa gaggagcttt
    36901 taatttggct aaatgaggct gcattttatc ggcaacataa acttcggtat tgtcgtccat
    36961 aatatcgccc ggcaataaaa tcagatcgac tttttgctgg ttgaaaatct ctgccagttg
    37021 gtcaagttgc ttggttccga acagttttcc taaatgcaga tcgcttgcca taccaatgcg
    37081 aagcggtttc tctaatggtt tatccaattt caccgaataa tgtactactg ttggggtata
    37141 agcgttgtaa tagccaagcc caagtaagcc aaagaatgca aatgggtagg cgattttcag
    37201 ccagcgattg acggtagtat tgccgttgaa tattttgtaa atacaagcgg tgaaaaaact
    37261 gataaaaaat gcaaaaagta acaataccaa tatgaatgcc attattctaa atagcgcaaa
    37321 agtacgagta agatgcaaaa tcactaatcc gtttgcgact aagaaagtga gaataccaac
    37381 tgttttacgg tttttacttg ataaattaaa taaccagctg acagtctttg caaagttgaa
    37441 taaaaagagt tgtaacaccg caatcacaag ggcggtggta atgtagtaac gatattccat
    37501 atttttcctt caataaattg gctaaaccca gccgatttgt cttaataaaa ataagccgat
    37561 gctggcacta aacattgagc cgagagtcgt aatgccgatc agatttgcgg ctgcctcgcc
    37621 gtctccgcca tagttgcgtg tcattgcgta ggtggctgaa gcaacgggag cagaagcagc
    37681 cacaaagaca atgcctagtt ccatcggcgg aagttgaaac acaaatttcc cgagtagtag
    37741 caagaaaatt ggagcaaaaa tcagccgaat cgaggcagaa aacagcacaa ttttattgat
    37801 ggtgctttcc actccttgat taaattgttt caactgtttg aaattaatgc ttgctccggt
    37861 gcagataagt gctaatggta gtgtcaggct cgccattaat ttaccagcag actcaagcgg
    37921 ggttggaatt tggtggctta attcaaaata gttaaaagtt aagcctgcaa tgacggctag
    37981 aatcagcgga tttctcaata tcgacaatat taatctgcca aaattcactt ttttctcgct
    38041 taacgatgaa gtgagggtaa tcactgcaag cacattaaag gtaatcacca agcacgaaat
    38101 ataaactgaa gcggcagcga gagctttatc gccataagca ttgagaatta aggcaatgcc
    38161 taaaatcgcc gcattggtac ggaaagtgcc ttgagtgaaa atacaacgat aacggcggtt
    38221 ttcaatatgt cgagccgccc accattccgc ccataaatag atcaaaatcg aaccgccgac
    38281 tccggtcgag atcaggttga tttggctgga gaaatctaac gggcttttta gcatattcaa
    38341 gaaaatcatc ggtggcaggg taaaattaaa taccaccttt gatgccatat tgcaaaaggt
    38401 atcgtcaata aattttcgtc tgcgtggaaa aataccgaac agcattaaca aaatggttgg
    38461 taaggtaacg ccaatgctaa attggataga gtcgaaaagc ataatgtttg ccttaaatga
    38521 tggcacgagt gtcttttgct tgtaccgtag attatcaata aagtaccagc gtggacgctg
    38581 gtactatcat caatggaaat gaaattacaa tcctgccttt aagcttgctt cgacaaattt
    38641 atccaaatca ccgtccagca cttgttgggt ggtgcgatgt tccacaccgg tacggtggtc
    38701 tttaatccgt gaatcgtcta gcacataaga gcggatctgg ctgccccagc cgatgtcgga
    38761 tttgttgtct tccatcgcct gtttttccgc atttttcttg ctcatttcca gctcatatag
    38821 cttcgcttta agctgtttca tcgcctgatc tttattttga tgttgtgaac gaccgttctg
    38881 gcactgcacc acaatgccgc tcggtatatg ggtaattcgc accgccgatt cggttttatt
    38941 gacgtgctga ccacccgccc ctgaggcacg atacacatca atccgcaaat ccgcagggtt
    39001 gatttcaata tcaatatcgt catcgacttc cggataaacg aaagccgccg agaacgaggt
    39061 atgacgaccg ttattggcat caaacgggct tttacgcacc aagcggtgaa tacccgtttc
    39121 ggttctgaac cagccgtaag catagtcgcc ggaaattttc acggtggcgg atttaatccc
    39181 tgccacatca ccgtctgagg cttccattag ttcggcttta aaccctttgc tctctgccca
    39241 acgcaaatac atacgcagta acatttctgt ccagtcctga gcttccgttc cacccgaacc
    39301 ggcttgcaaa tccaaatagc aatcggcact gtcgtgtggg ccgctgaaca tccgcttaaa
    39361 ttctaaatcg gcaagttttt tctctaattc gtctgcttcc acttgggctt cattgaaggt
    39421 atcctgatct tctgcttcca ccgccagctc aatcaaccct tcaacatctt caatcccttg
    39481 ctctaaggct ttaatcgtat tgacgatctg ctccaacatt gcccgctctt taccaagcgc
    39541 ttgtgctttt tccggcttgt tccatacatc gggttgttcc agctcggcat tgacctcttc
    39601 taagcgttcg actttatgct caaagtcaaa gataccccct gatcaccgcg gtgcgctcgc
    39661 ttaaatcagt tagttggttt ttaattgggt ttaattcaaa cattgtcgtt cctgtttttg
    39721 cttattttaa aaagatgaat tatagctgaa gttaagcaag cggtcgaatt ttgcaagaaa
    39781 tggagcaatg atcgtttcta gtaatgagat ttggttcata aaagttgcaa ctgtttctgc
    39841 tatttggctt tgatagctaa aaatctttaa aaaaacaagc ggtcgtttta ccccattttt
    39901 tgcaaaacga ccgtagcttc ttgctataat cgctgaaaaa atgctgcaag gagattttat
    39961 ggcaaagcgc ccaagtgata ttgatgcaac cctattgcaa ctggaaatcc tacgccgtat
    40021 ccccaaatta cccgctaaaa ttgatgctaa aagtttgcac caacagctat tagatgccgg
    40081 ctttgaacgg gatattcgca ctgttcagcg ttcgctcaaa atgttatgcg agcattttga
    40141 tattgaatgc gatgagcgga gcaaaccctt tggttatagc tggaaaatcc gctcagaggg
    40201 gctggcattg ccgattctca acgaacaaca atcattactg ctaaaacttg ccgagcaaca
    40261 gctgaaatat ctgttacccg caaatttaat ggcatcaatg aaaccctttt ttgagcaggc
    40321 agacagaatg gtttccgggg cgaaagacaa gcccgaatac caatggctaa ataaagtttg
    40381 ctccacgcca accagcctac cgctgatccc tgcaaaaatt aaagaagaga tttttaattc
    40441 cgtaagccaa gccttatttc aaaataagtt gttaaagatc gaatatcaga accagcacgg
    40501 caaaaaacac caagcgacaa ttatgccgtt ggcgatttca caacaaggtg cgagcattta
    40561 tttggtctgc cgttacgaag ggtttgacga caaccgcctg ttggctcttc accgcattcg
    40621 taaagcggag atttctactt ttagttttga acgcccgaaa gattttaatt tgcaagccta
    40681 ccaagatgcc ggacacctcg gttttggcaa tggcgaaaaa gctagcctta ccttttcgat
    40741 tagcagagac gccggtttcc atttaaccga aacaccgctt gccaaagatc aaaaaattct
    40801 cgaggagagt gaaactcact accgtattca agccatagtc gctgataatg atatgctaac
    40861 ctggtagcta cgcaaatttg gcgaagatat ttgggatatc gagaaagaag cgctaaaata
    40921 agctaaacaa gcggtcggtt ttgtgggaat ttttgctaaa tagtatcgac cgctcctccc
    40981 taaacagacc tttatcataa atacaactct ttcaatcaga tattcttact gtctattgat
    41041 gaacgattcg aatttttcta gtggttgaaa tttaaactaa ttttcttgct ttttggcatt
    41101 tttcagactt ttaattctct ccattagcct gtttttttac gctctttttc ataaacagga
    41161 ataaccaatg ccttttcaac ttactttctg ccaacaagcc ggcaatcagc accagaaaaa
    41221 tcaagatgca ctgtttaacg gcaaagcggt gtaccaatgg caacttaaaa atgccgagag
    41281 ttatctgctg gataacgaca aagtaatttt tggggttgcg gacggcgttt ccagccaccc
    41341 tcgaaatcat cttgcctcac attatttaat ggcgttactc agccaatgcc aatcccttga
    41401 tagccaatgg ttgcgacagg ctcacggcga tttttgcgaa aaattagcga aagattattt
    41461 tggtgcttct tgcacttttg ttgcttgtga attacaccat aacggcagag ggcgtatggt
    41521 taatgtgggc gacagtcgag cctataaaat tacggcaaac ggggagtggc aacaactgag
    41581 ttttgatcac accatactgg ctgaaatgaa acagaaaggc ttggttaagg aagggagcaa
    41641 ctatgcctca atgtataacg gcttaaccga ttgtattgtt gccgattttg acgccgatga
    41701 tttccgcatt catatagccg aatttcaact ggaaaaaggc gagagcattt tgctctgttc
    41761 tgacggtttg cacgaacaac tcgccccaga agctattcag gcgatttagg acggatacga
    41821 aagcccgtct catcgtctgc aaatttgcag aaaaatggta aaaatgcacc gcttgtatga
    41881 cgatttttct gcggtgattt gtgaaattgt gtaattaaaa cgacattatt tgtcgcattg
    41941 gtgcttaaaa tccgcataaa acagaggaga aaaaaatgaa aaacgatttc cattatgccg
    42001 ctgaattaat ccgcaatgca gacggcattt taattaccgc aggggctgga atgtcggtgg
    42061 acagtggctt gcccgatttc cgtagcgtgg gagggttatg gaattcctac ccaccgctca
    42121 aaaaatttaa tttgcaattt atgcagattg ccacaccgct tgcctatcag gaacgccctg
    42181 a
//
LOCUS       DANMBQ010000009        40649 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.009, whole genome shotgun sequence.
ACCESSION   DANMBQ010000009 DANMBQ010000000
VERSION     DANMBQ010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 40649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40649
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.009"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(66..140)
                     /locus_tag="PXE92_000426"
     tRNA            complement(66..140)
                     /locus_tag="PXE92_000426"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(106..108),aa:Gln,seq:ttg)
     gene            complement(166..250)
                     /locus_tag="PXE92_000427"
     tRNA            complement(166..250)
                     /locus_tag="PXE92_000427"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(214..216),aa:Leu,seq:tag)
     gene            complement(253..329)
                     /locus_tag="PXE92_000428"
     tRNA            complement(253..329)
                     /locus_tag="PXE92_000428"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(293..295),aa:Met,seq:cat)
     gene            complement(496..1320)
                     /gene="aroE"
                     /locus_tag="PXE92_000429"
     CDS             complement(496..1320)
                     /gene="aroE"
                     /locus_tag="PXE92_000429"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDL5759714.1"
                     /translation="MNRYAVWGNPIAQSKSPRIHQLFALQTQRNIEYIANLGDETAFE
                     QQLADFFASGAKGCNITAPFKERAFKLADEFSETALLAQACNTLKRLEDGRLYADNTD
                     GAGLVSDLERLGWLQKGHKTLILGAGGATKGVLLPLLKAGLEITLYNRTQEKAVVLAE
                     KFAKFGKIQTACLSDLANQLFNLIVNATSLGLQGKYVELPESVIASANIYDMQYAPNM
                     QTPFLNYARRCGATACQDGLGMLVGQAAFAFSLWEGQFPDVEPVLAQLKLEMQTVK"
     gene            complement(1327..1881)
                     /locus_tag="PXE92_000430"
     CDS             complement(1327..1881)
                     /locus_tag="PXE92_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HDL5759715.1"
                     /translation="MNNFLEIVNQLKQEEVVAYPTEAVFGLGCNPQSEKAVRKLLVLK
                     QRPEEKGLILLASDLKYLLPYIDEARMTEQAWQRLSHIGEQAITWIVPVKNTVPSYLT
                     GKFDSIAVRLCNVPAVVQLCEASGVALTSTSANLSGEPPCRNAKEVIDQFGQDFPVLH
                     ADTLGRENPSEIRDIFSQQIFRQG"
     gene            complement(1874..2410)
                     /locus_tag="PXE92_000431"
     CDS             complement(1874..2410)
                     /locus_tag="PXE92_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HDL5759716.1"
                     /translation="MVLFKSTKQTETCPQCGSPLQIKQGKKGLFLGCSAYPECDYIKP
                     LHQAGHIIKQLDELCPECGGNLQLKQGNYGIFIGCSHYPECHFIVHEEAEVEEEFDCP
                     ECKQHKLIARKGRSGKIFYGCIGFPNCKFTLATRPINHLCEKCGCELATIKKIKGKQF
                     TICANKSCQHQTELKPNE"
     gene            complement(2420..2731)
                     /locus_tag="PXE92_000432"
     CDS             complement(2420..2731)
                     /locus_tag="PXE92_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HDL5759717.1"
                     /translation="MNREKITFFSRFEADILSGKKTITIRDKSESYFQPNQELAVFTN
                     ETDRFFANIKVLSVTPIVFDELNEQHAKQENMSLAELKQVIREIYPNDNAFFVIEFTL
                     I"
     gene            complement(2724..3200)
                     /gene="recX"
                     /locus_tag="PXE92_000433"
     CDS             complement(2724..3200)
                     /gene="recX"
                     /locus_tag="PXE92_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HDL5759718.1"
                     /translation="MTTSTTKTNKYTAVNYLLYLLSKRDYSEQELRQKLKQKEYELTE
                     IDAAIEKAQANQWQSDERFCTTFIRYRSMQGIGPRRLKQELKLKGVKDWLINQELENA
                     EVDWFELAEQIFEKKRPLVWDLKAKQKMWRFMVSRGFYNDHFSHLMALDYSSDEYE"
     gene            complement(3259..4365)
                     /gene="recA"
                     /locus_tag="PXE92_000434"
     CDS             complement(3259..4365)
                     /gene="recA"
                     /locus_tag="PXE92_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDL5759719.1"
                     /translation="MAEKKSQKNTPVKQIDPEQKEKALAAALAQIEKQFGKGSIMKLG
                     DTQALDIEAVSTGSLGLDSALGIGGLPMGRIVEIYGPESSGKTTLTLSVVAQAQKNGK
                     TCAFIDAEHALDPIYARKLGVDTDGLLISQPDNGEQALEICDALVRSGAVDVIIVDSV
                     AALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVIFINQIRMKIGVMFG
                     NPETTTGGNALKFYASVRLDIRRSGVVKDGDEVIGSETKVKIVKNKVAPPFREVQFDI
                     MYGEGIARMNELLILAESHGFINKAGAWFSYEGEKIGQGKNNAIKWLKEHPEVASKIE
                     QDIRNLLISNPTFTATPDSENADNADDEFSEEEL"
     gene            complement(4466..5086)
                     /locus_tag="PXE92_000435"
     CDS             complement(4466..5086)
                     /locus_tag="PXE92_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HDL5759720.1"
                     /translation="MCRFPLFETLSIIDGKVQNLQYHQQRFEQATQEYFGCEPRFSLA
                     DILVVPEASQRGKVRCRIDYNATEFELKFFIYSPKKVERFRLVEVENWDYHLKFSDRK
                     RFDLLPILQNEEVIILNNGYVSDCSIGNLLFLKQGIWYSPQHYLLKGTQLSKLLDEGK
                     VVLAKIAKQDLHQYEKIMLINALNPFEEPRALPCSQIYFCDLDRKS"
     gene            complement(5064..6038)
                     /locus_tag="PXE92_000436"
     CDS             complement(5064..6038)
                     /locus_tag="PXE92_000436"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HDL5759721.1"
                     /translation="MQDFIHQANHYGQAKRPFFFLIDFEQQKPLIFPLEQAHASGLFF
                     EFFCKSNLEKPVEKPTKAFELSANPIPFSEYQTGFELVKKEIQAGNSYLLNLSYPTAI
                     ETNYSLAEIFAASKAKYKCYLQGRFVCFSPECFVRIENNRIFSYPMKGTINANEENAE
                     QKLMASEKEFTEHNTIVDLIRNDLALVAKNIEVTKYRYVEKVETHRGAILQTSSEICG
                     ELGENWQENIGSILAKLLPAGSISGAPKEKTVSIIQQAELGKRGYYTGIFGYFDGESL
                     ESAVAIRYIAQTSNGLVFHSGGGITSQSVLTDEYNELLEKVYVPISAI"
     gene            6148..7755
                     /gene="rmuC"
                     /locus_tag="PXE92_000437"
     CDS             6148..7755
                     /gene="rmuC"
                     /locus_tag="PXE92_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HDL5759722.1"
                     /translation="MHFQEIGIYIALAVCVLVGVYLFFLKSRYQRNAYELSQDLGKIT
                     ENFEQIQQKYEVLAQEKNQLEQWAIQQQTKYEAVSERLNERDGQLQRFQQKIELAEQQ
                     ENQLERYINELKERVGSSQAKAESLEEQLQFSQSSLSTKERENQALFSRLNEVQNELT
                     ELRTTLSEKQANFEAQQRNFIEVKQQLNVEFQHLAQQILDEKSKRFSETNQSSLEALL
                     KPFKEQIEGFQKRVNEVHSESLKGSANLEAEIKRVLQIGVSMSEEAQNLATALKGNNK
                     IAGNWGEVQLESALQSAGLLAGEHYQAQESFRDEEGRRFAPDFVVHLPDQKHLIIDSK
                     VSLVAYDQAVRSEENFAISQALDEHCRSLRNHIEGLSKKNYSALLGIKSPDFVLMFIP
                     IEPAYIEAMKHDPQLFNFGYERNVILVSHTTLMPILRTVANLWRIERGNSEAREISEK
                     AGEIYNQVCAVADRLAKLGNTLNTANNQYNQTVTSLVGRQGLLGKVERFQHLSSKASQ
                     IVPQVELIENEVDTIKLEMVSRELLEE"
     gene            7818..8402
                     /locus_tag="PXE92_000438"
     CDS             7818..8402
                     /locus_tag="PXE92_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component II"
                     /protein_id="HDL5759723.1"
                     /translation="MLKKLLIIDNHDSFTFNLVDLLRKLDVPAKVVLVEELDLNEVEH
                     FSHILISPGPDVPRAYLQTFAMLERYHQTKSILGVCLGHQTICEFFGGKLYNLNDVRH
                     GQQRTLTQIEPNPIFKGLPKQLKVGLYHSWGILQNSLQNTPLVPTAVCDQNVLMAFKH
                     QHLPIFGVQFHPESFITEFGQQMLANWLEITQDF"
     gene            8499..9581
                     /gene="prfA"
                     /locus_tag="PXE92_000439"
     CDS             8499..9581
                     /gene="prfA"
                     /locus_tag="PXE92_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDL5759724.1"
                     /translation="MKDSIINKLESLSERHEELQALLGDASIISDQDKFRAYSKEYSQ
                     LEEVVGTFNRWKKLNNDIEEAQLLLDDPDMKDMAAEEIAENKAEIENLEQHLQILLLP
                     KDPNDEYNAFLEIRAGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYK
                     EIIVKISGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEIN
                     PSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLAS
                     RIVQVEQERQAAEQADTRRNLLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMN
                     GKIDELIQPIITEYQADQLAALSEQN"
     gene            9693..10295
                     /locus_tag="PXE92_000440"
     CDS             9693..10295
                     /locus_tag="PXE92_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759725.1"
                     /translation="MRKLGLLAVFTLVLSACSNSTKIEQTILSKQDIVGSWVCAIKYD
                     DLKVSTLDFSEFKANGEMTNFGDISDENFEPIKFTYVTGDKGKWDLKGNRLVIDYDLS
                     ERKVKRTTPKKFLEFLKQEERKASKTAKKLLKYEQGIFNILSDQKNTENSKIILDILK
                     FGHSRMAIQQNMGDKVYSGGCVTADKAEEYLDILKNRNSK"
     gene            10295..11161
                     /gene="prmC"
                     /locus_tag="PXE92_000441"
     CDS             10295..11161
                     /gene="prmC"
                     /locus_tag="PXE92_000441"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL5759726.1"
                     /translation="MDYREWLTFAEQKLLENSGADPYLNAKFDANLLLQAVTKRSKSA
                     IFAFSETLLSESELAELAEKLARRAKGEPMAYILGYREFWSLPLKVSPATLIPRPDTE
                     RLVELALEYANKRLGNQKMLQILDLGTGTGAIALALASELGEKAQIIGVDFQNEAVQL
                     AEENRRNLGLNQVTFLQSDWFSSLANQQFDLIVSNPPYIDESDENLTVGDVRFEPLTA
                     LVADNKGLSDLQKIIENAPLHLKPQGALMLEHGWKQGNLVRDLFDLHLWEQVETAQDY
                     AGNDRVTKAILK"
     gene            11170..12036
                     /locus_tag="PXE92_000442"
     CDS             11170..12036
                     /locus_tag="PXE92_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB1 family protein"
                     /protein_id="HDL5759727.1"
                     /translation="MDDIIEELLKELEDPKVTISETELKKFLYREILRLTTLIDKNVS
                     EQQVFGQMSALVKKARYNVNGEGDEERINQLLHLVYREWGFHCYYEDYFHTENLLLNQ
                     VIRKRRGMPVSLGAVALYLSAVLDLPLYPVNFPTQLVLRAEIHQPNGATKVRFINPWN
                     GEFLTIEMLNKWLEGEMGFGVEVTPDLLRRAEPQELLERVETVFKMALTREGKYEETL
                     RLIEYRLAFSPEDPYEIRDRGMVLASMDCYQAALEDINYFIDQCPEDPSAEILKMEVK
                     GLQQKSQESVVH"
     gene            12126..12980
                     /gene="kdsA"
                     /locus_tag="PXE92_000443"
     CDS             12126..12980
                     /gene="kdsA"
                     /locus_tag="PXE92_000443"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HDL5759728.1"
                     /translation="MTDKIVKVGNIEVANHKPFTLFGGMNVLESRDMALRVCEQYVEV
                     TQKLNVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKQTFGVNIITDVHEIYQC
                     KPVAEVVDVIQLPAFLARQTDLVEAMARTGAVINVKKPQFLSPGQMGNIVEKIAECGN
                     DQVILCDRGTNFGYDNLVVDMLGFGIMKKVSKGCPVIFDVTHSLQCRDPFGAASGGRR
                     DQVTELARSGMAIGLAGLFLEAHPDPNSAKCDGPSALPLSKLEAFVSQMKAIDELVKS
                     FEEIDTSK"
     gene            13201..14148
                     /locus_tag="PXE92_000444"
     CDS             13201..14148
                     /locus_tag="PXE92_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HDL5759729.1"
                     /translation="MLNIVFLDRTGIPATHDIPRPNFPHTWTEYATTSADQTFERVKE
                     ADIIITSKVLLQRDLLAKLPKLKLIAITATGTNNVDLAAAKELGIAVKNVTGYSSVTV
                     PEHVIGMIYSLKHRLADYHRDLITSDRWATCGQFCYVDYPIHDVRGSTLGIFGKGNIG
                     AEVARLAQAVGMQVIFAEHQGATEIREGYTAFEEVFKQADIISLHCPLTEQTQNLINA
                     ETLALMKPTAYIINTGRGPLIDEQALLEALEQGKIAGAALDVLVKEPPEKDNPLMLAA
                     KRLPNLLITPHVAWASDSAVTTLVNKVTQNMEEFVATGM"
     gene            14246..15418
                     /locus_tag="PXE92_000445"
     CDS             14246..15418
                     /locus_tag="PXE92_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HDL5759730.1"
                     /translation="MNLTPFFIAFRYFRSKSADRFGRLVTNLASLGIVLGVMALVIVL
                     SVMNGLENMQKTNLLSTLPHAIITPQEGHFAKGEKLALPEFAKQSVVINRANVIIQSS
                     QGINAGQLIGVENATDDPLLVAENIPALLPSGEFKVVIGSRLANKLNVTVGDKLRLMI
                     TENSQYTPLGRVPVQRLFEISGVYQSNREASEFTLFANLADVGRLLRISEDQVQGVRL
                     YLQDPFQVTELSQYFDAERYQISDWREQKGEFFQAVKMEKNMMGLLISLIIVVAISNI
                     VTSLSLMVVDKQGEIAILQTQGLTKKQVMQIFVFQGAIVGVIGSIIGGLLGVLIAYNL
                     DQIILLLNPSIHLPTLISGTQIAVIVGVSMLLSLLCTLYPAYRASKIEPAQALRYE"
     gene            15435..16118
                     /gene="lolD"
                     /locus_tag="PXE92_000446"
     CDS             15435..16118
                     /gene="lolD"
                     /locus_tag="PXE92_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HDL5759731.1"
                     /translation="MTELLRCEHISKFYDEGEQKVQVLKEVSFSMNEGELVAIVGSSG
                     SGKSTLLHTLGGLDQPSTGEVWIRGQSLQQLSSDKLALLRNQNLGFVYQFHHLMADFT
                     ALENVMMPMLIGKQNKTEAANRAEKMLQAVGLAHRMTHRPSALSGGERQRVAIARALV
                     NNPALVLADEPTGNLDQKTTESIFELIQQLNQEQNIAFLLVTHDLNLANKLSRSLVMR
                     DGVLSEGSL"
     gene            16115..17380
                     /gene="lolE"
                     /locus_tag="PXE92_000447"
     CDS             16115..17380
                     /gene="lolE"
                     /locus_tag="PXE92_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HDL5759732.1"
                     /translation="MSTPFFISWRYQRGKQKNKLVSLIALFSNIGIALGVAVLIIGLS
                     AMNGFERELNNRVLSVVPHAELVSFQGNQPQPIFDSKKLEALIKKSQNVTASSPFVSF
                     TALIENGAQLKIAQVRGVDPKKQDQASQLSQFIPPEQWQAFNQQFQADEDGLILGAGI
                     AKALEVEAGDEVTLLIPQPTEDGKLAQPLRFNLNVTGILRLDGQLDHSYALIPLNKAQ
                     ELMEYQANEVSGLEISLANPFDVQQLEMPQLNGYTQPLYLNTWIDKFGYMYNDIQLIR
                     TVMYIAMVLVIGVACFNIISTLIMAVKDKQGDIAILRTLGANNGFIRRIFLWYGLISG
                     MKGALFGLILGVILSLNLTAIIKAIEAFFEVKLLSDGVYFVDFLPSELHWQDVVYVLA
                     ATIILSLFASLYPANRAAKLEPAKVLSGH"
     gene            complement(17455..19386)
                     /gene="thrS"
                     /locus_tag="PXE92_000448"
     CDS             complement(17455..19386)
                     /gene="thrS"
                     /locus_tag="PXE92_000448"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDL5759733.1"
                     /translation="MPIITLPDGSQRSFDNPVSVMEVAQSIGAGLAKATIAGRVNGER
                     RDASDIISQDSTLEIITAKDEDGLEIIRHSTAHLLGHSIKQLFPDVKMAIGPTIENGF
                     YYDIDLDRSLTQEDLDALEKRMLELAKTNYDVVKRPVSWQEARDTFEKRGEPYKMAIL
                     DENIERTATPALYHHEEYIDMCRGPHVPNMRFCHHFKLQKVAGAYWRGDSKNKMLQRI
                     YGTAWADKKQLAEYLQRLEEAAKRDHRRIGKALDLYHMQEEAPGMVFWHNDGWTIFRE
                     LETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSENREYAIKPMNC
                     PGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IESEVISCIKMVYDIYSTFGFTNIAVKLSTRPENRIGDDAMWDRAEKGLANALRNNGL
                     EYEIQEGEGAFYGPKIEFALRDCLGREWQCGTVQLDFALPGRLAASYVAEDNGRRTPV
                     MIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNITDSQADYVQQVVKQLSDAG
                     IRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTRKGADLGTYLVSDL
                     VEILKNQIKARELKLLGEE"
     gene            complement(19553..20902)
                     /locus_tag="PXE92_000449"
     CDS             complement(19553..20902)
                     /locus_tag="PXE92_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5759734.1"
                     /translation="MNSTKFYSLYSGIFFLFFGYGLFLNSAGIKLAEMGITDIIIGLL
                     NAAFFIGAALSTIFAHRIVSSVGHIRSFSVFCAVFAIAALGHIMIDTLWIWGVLRIIL
                     GFCHYSLLLLVESWLSEKTNVDTRGKVLATYNIIFYLAFILGVSLLSLELSSRNIFIL
                     STILVVMSMIPIALTKMVQPDIPARERISIPKLFAISPLALATSFISGMLVNGFFTMA
                     SVFLLKFSFSLSEISLYLIISMIGGFISQMPMAILSNRIGRRNAILACSVIATLTALA
                     GLFAIFQENLTAWGQYIIAFFFGCSLFSLYALSIARANDELPNNMNTVEVSRGLLFCY
                     GVGALVAPPLIGFAMSLSAEYGFYALFGLFSLSLFICAFRTKSIPKAERAEMQYATPI
                     ATASPLEEIEVVEDALIPFDEEAVQEYQAQLEILEQDPQTENENIELDEGAAENSKV"
     gene            complement(21177..21668)
                     /locus_tag="PXE92_000450"
     CDS             complement(21177..21668)
                     /locus_tag="PXE92_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HDL5759735.1"
                     /translation="MFTTQLIQTKRWLEANSITTFWLKTFIGATLLAIFAQISVPMYP
                     VPITGQTLALTVVGFAMGRKAATAAVLLYLFEGAIGLPVFAGGASGFHHFFGPTGGYL
                     LGYIPTAYFLGYYSDKGVLNSFWKSLFVALIASVITFAFGLAQLSLYQKAQYYKRAYI
                     HLF"
     gene            21749..22516
                     /locus_tag="PXE92_000451"
     CDS             21749..22516
                     /locus_tag="PXE92_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--protein ligase"
                     /protein_id="HDL5759736.1"
                     /translation="MVKPVYIYCDEGSSEIGVQSLLLAVKQHLQRPAYLINAKQIIQS
                     KFSDGCLLIMPGGADLPYCKKLNGEGNRRIRQFIEQGGAYLGICAGAYYGCAELNFVG
                     RDYSVNGNRELALFNGIAGIAKGSLPQFTNGQLYDKNIGSKAIVEVTLAEGGKMPFYY
                     HGGCCFEPNSTTVIYNPLAYYPDGSVAMIEGELGRGYYLLSGVHFELQAVVYWQKIVN
                     CCENLDIKTQEEAICSNFNVNYGSQIWQHLKQRLNQA"
     gene            complement(22507..23301)
                     /locus_tag="PXE92_000452"
     CDS             complement(22507..23301)
                     /locus_tag="PXE92_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDL5759737.1"
                     /translation="MRFFDTHTHLDYLAESLNLSIPELVENAKQHQVECILIVAVFAK
                     NFAKVTACAKQKPENLVYGLGLHPLYIQQHQQQDLILLENLLSQQDPQCTAIAEIGLE
                     KAVSEVSTPELWKKQCEFLEAQLSLAKKFNLPVNLHSRKSHDQLFVFLKKAQLTKTGV
                     VHGFAGSYEQAKRFVDLGYKIGVGGTITYERANKTREAIRKLPLESLLLETDSPDMPV
                     FGFQGQPNRPERLLVTFNSLCELRTESPNLIAETIWQNSERLFFYA"
     gene            complement(23362..24948)
                     /locus_tag="PXE92_000453"
     CDS             complement(23362..24948)
                     /locus_tag="PXE92_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005667512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HDL5759738.1"
                     /translation="MLWFFFCVAVLVLGYFTYGKIIEKIFVINPKRATPAYAMNDGVD
                     YMPMSKTKIWLIQLLNIAGTGPIFGPILGALYGPVAMLWIVIGCIFAGAVHDYFCGML
                     SIRNGGATMPNLAGKFLGRPVKLFINVMALILLLLVGVVFVASPAQLLSTITMDIAGA
                     TQSAMELGDVEAIKESVASGGVTVWGMDKATVISVWTLIIFAYYILATLLPVDKIIGR
                     IYPFFGALLLFMSVGMVYGLVSAHLSATDPIDFFRTVNADGQGLTWEKFTQNFQVKGD
                     VPIWPLLFLTISCGALSGFHATQTPLMARCAQNEKEGRFIFYGAMITEGVIALVWCAV
                     GLSFYENPQALQDAISAGSPSKVVYDSSLHFLGFIGGIFAVLGVVVLPITSGDTAFRA
                     ARLQLAEIFGLEQRTLVKRLYIAVPLFVLGFIVSKVDFSVLWRYFTWANQMTAMVMLW
                     TAAGYLYRYKKFHWVCSIPAWFITTVCATYLANNKIGFGLDYELSVYIGFAITVVCVI
                     CFFAFLKPSEARDEDAYVTN"
     gene            complement(25134..26987)
                     /gene="dxs"
                     /locus_tag="PXE92_000454"
     CDS             complement(25134..26987)
                     /gene="dxs"
                     /locus_tag="PXE92_000454"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDL5759739.1"
                     /translation="MEKKYPLLSEINSPEDLRLLSKDQLQTVVDELRAYLLESVSQTS
                     GHLASGLGVVELTVALHYVYQTPFDQLIWDVGHQAYPHKILTGRRDQMHTIRQKDGIH
                     PFPWREESPYDVLSVGHSSTSISAGLGIAVAAEKENAGRKTVCVIGDGAITAGMAFEA
                     LNHAGALHTDMLVILNDNEMSISENVGALNNHLARIFSGSLYTSVRDGSKKILDKVPT
                     IKNFMKKSEEHMKGVIFSPESTLFEELGFNYIGPIDGHNIDELVKTLSNMRELKGPQF
                     LHIRTKKGKGYTPAENDPIGYHGVPKFDPTAAELPKSKAAPTYSNIFGDWLCEMAERD
                     PKIIGITPAMREGSGMVEFSKRFPEQYFDVAIAEQHAVTFGAGLAIAGYKPVVAIYSS
                     FLQRAYDQLIHDVAIQNLPVIFAIDRAGIVGADGQTHQGAFDLSFMRCIPNMTIMAPS
                     DENEMRKMLYTAYTMNTPSAIRYPRGNAKGVKLEPMQRLEVGKGNIIREGKKVAILNF
                     GALLDEAKIVAEKHNYTLVDMRFIKPLDEALLQKVADSHELLVTLEENAIQGGAGSFV
                     NEYLQNIGKIKPLVMLGIPDFFVPQSTQAEAYADLGLDAQGIEAKIQKFDI"
     gene            complement(27032..27844)
                     /gene="suhB"
                     /locus_tag="PXE92_000455"
     CDS             complement(27032..27844)
                     /gene="suhB"
                     /locus_tag="PXE92_000455"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HDL5759740.1"
                     /translation="MNPMLNIAIRAARKAGNIIAKGYEQSPQDTQVLQKNTNDYVTEI
                     DKAAEAAIIDVIRKSYPEHSIVTEESGVLNGSNENVQWVIDPLDGTTNFVKRLPHFAV
                     SIAVRENGRTTVGVVYDPIRNELFTAVRGEGAKLNEFRLRIDAERRDLKGTVIATGFP
                     FKVIRHRDAHLNMLEGLMNNGVADFRRTGSAALDLAYVAAGRVDGFFEIGLKPWDFAA
                     GELIAREAGAIVTNFVGGTDYLKTGNLVVGNGRVVKEILNSIQPTLTEELKA"
     gene            28025..29059
                     /locus_tag="PXE92_000456"
     CDS             28025..29059
                     /locus_tag="PXE92_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA methyltransferase"
                     /protein_id="HDL5759741.1"
                     /translation="MQFKENNQPRFKHREERRSDECSPRFSDKGKMRGNEGKSDRPHK
                     LHFKRDEAYSRSEQIYPAEGKKASGEGSVQIWVKGGNSSVKEKKNGPLSPRAPEKIKK
                     NRLEEMKVYGENACISLFQQRPESIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDRE
                     EMERVTGTEHHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTC
                     AFYGVKGIITENVDSLNSSAAARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLT
                     RHKQAPSLTKIKLAEKVVFVLSEIPASDVAYAEDTTIQLSFNNPLNSGLNVAVNAGIL
                     LNQWYQTHIL"
     gene            29069..29953
                     /locus_tag="PXE92_000457"
     CDS             29069..29953
                     /locus_tag="PXE92_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HDL5759742.1"
                     /translation="MNQQKPFEVIAIVGTPRHDSAFETHLAVYNWLKDRDYQILVETE
                     VATQLQLKESYSLDQIGQRAELVIVIGGDGNMLGIARALAKYRVPLIGINRGNLGFLT
                     DIAPQTAFEQLYSCLVKNEYVIEERFLLEAFIERNGKIIAANNALNEIVVHPTQVARI
                     IEFEVYIDGKFAFSQRADGLIVATPTGSTAYSLSAGGPILTPNMNAMALVPMHPHTLS
                     SRPLVVDGDSQISLRFAKYNTPDLEVICDGQVNMHFTPEDRVLVRKSPDKLQLLHLKD
                     YSYFTVLGSKLGWASKLF"
     gene            30092..31069
                     /locus_tag="PXE92_000458"
     CDS             30092..31069
                     /locus_tag="PXE92_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1852 domain-containing protein"
                     /protein_id="HDL5759743.1"
                     /translation="MTTNFKCQVHTIEFNEDYQPEQSTRLTTNFANLARGENRKQNLQ
                     NAIAMINNRFNDLANWDNPNADRYSVKLDIVSLDIDVEGKGEFFPAIEWLKTYVIDYK
                     TGKTIDGIIGNNFSSFVRDYDFSVLLLDHNKDKPQFSVPEGYGELHGKLFKHLLASPE
                     YTAKYKKPPVICLSVATTRTYTRTTNVHPILGVEYLQDSYSLTDAYFAKMGLKVRYFM
                     PPKSVAPYAFYFDENADLLNDYTNLELISTIATMEAFQKIYRPEIYNANSVAGQVYKG
                     SLTYQDYSVTKVEYDREERTQLAIKQGKYTEEHFIKRYQAILEAWATEE"
     gene            31157..32188
                     /locus_tag="PXE92_000459"
     CDS             31157..32188
                     /locus_tag="PXE92_000459"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL5759744.1"
                     /translation="MSNILLPTSTAGSLPKPSWLAEPEKLWSPWKFEGEELLQAKRDA
                     LLVSLAEQIAAGIDIVSDGEQTRQHFVTTFIEHLEGVDFSKREIVRIRNRYDASVPSV
                     VGAVSRPKSVFVDDAKFLRAHTDKPIKWALPGPMTMIDTLYDGHYKSREKLAWEFAKI
                     LNEEAKELEAAGVDIIQFDEPAFNVFFDELNDWGVAALERAAEGLKCETAVHICYGYG
                     IKANTDWKQTLGNEWRQYEESFPKLQQSKIDIISLECQNSRVPMDLIELVRGKKVMLG
                     AIDVATNIIETPEQVADTLRKALQFVDADKLYPSTNCGMAPLSRQVAQGKLQALSQGA
                     AILRAEFAK"
     gene            32276..32497
                     /locus_tag="PXE92_000460"
     CDS             32276..32497
                     /locus_tag="PXE92_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759745.1"
                     /translation="MLNLFKKPIKKSSFEAWAKLMDDVAKVAILAIPVILYGEYSLLM
                     KFTHSITLFAVVYFLLATARLFRETAEEM"
     gene            32773..34035
                     /locus_tag="PXE92_000461"
     CDS             32773..34035
                     /locus_tag="PXE92_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000919159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDL5759746.1"
                     /translation="MLKRDMNIADYDAVLWQAIQDEDRRQEEHIELIASENYASPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKALFGADYANVQPHSGSQAN
                     AAVYMALLNPGDTILGMSLAHGGHLTHGASVSFSGKIYKAEQYGITDEGLIDYEALRK
                     QAQEVKPKMIVAGFSAYSQVMDWAKMREIADEVGAYLFVDMAHVAGLIAAGVYPNPLP
                     HAHVVTTTTHKTLAGPRGGLILSASGDEEMYKKLQSAVFPAGQGGPLMHVIAAKAVCF
                     KEALEPEFKAYQQQVVKNAKAMVEVFKQRGFDVVSNGTENHLFLVSFVKQGLTGKAAD
                     AALGAANITVNKNSVPNDPQKPFVTSGIRVGTPSVTRRGFKEAEVTALAGWMCDVLDS
                     IGKDNHEQVIAETKAKVLDICKRLPVYA"
     gene            34193..35029
                     /locus_tag="PXE92_000462"
     CDS             34193..35029
                     /locus_tag="PXE92_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HDL5759747.1"
                     /translation="MLPRISSFLASLFMAFFLLGCSVSTQSLNEQNVDSIGQIIDLNT
                     NQTISFTELLSRLSSQDYVLVGEEHTQLIHHQIELYLFNQLTKKAKLHLIALEMLNVD
                     QQPAIDRIQFNRPVNLSATDLREAIQWQKWDWKMYQDLVVESLGSNSRVIATNLTDKE
                     VEILLNGAEPLKGSVSTSSEVKQKIAQLLLSMNHGMPYPMENMVAVQQFRDRRMAEKL
                     VKNALSTSLLIAGNHHVRKDLGVPLHIAEYDRTKKVAVLMLKTEREEITSSQADYLWV
                     TQ"
     gene            35083..37240
                     /locus_tag="PXE92_000463"
                     /pseudo
     CDS             35083..37240
                     /locus_tag="PXE92_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484758.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            37347..37985
                     /gene="purN"
                     /locus_tag="PXE92_000464"
     CDS             37347..37985
                     /gene="purN"
                     /locus_tag="PXE92_000464"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDL5759748.1"
                     /translation="MKKFVVLISGNGSNLQAMIDAQKSADTSGQICGVICNKADAYGL
                     IRAKQAGIPTFVFSRKDYQSNVEMDLAIAEQIEQLGAELIVLAGYMKILTPEFTQHFA
                     GKILNIHPSLLPKYPGLNTYQRAIEAGESEHGTTIHFVNEEVDAGAVVLQAKVPIYPE
                     DEIEDVMARVVEQEHRYYPLVIEWFCSGRLVSQHGKAYLDGKLLPACGYAED"
     gene            complement(38006..38812)
                     /locus_tag="PXE92_000465"
     CDS             complement(38006..38812)
                     /locus_tag="PXE92_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5759749.1"
                     /translation="MSNLLTCQNLSIVHQQKKLLEIQEIAFEQGKFTAIIGPNGAGKT
                     TLLKALSGNNAQTNSAVFYQHQRLTDLNGYALAQKRAMLSQQSQIAFPLKVEELVQLG
                     REPYRQSEFAKFNEKITAWAMETMSLTALKERSSIQLSGGEQHRAHIARVLAQLVPEP
                     NADLSGSWLLLDEPTNHLDIHHQYQLFSLLQKLKQQGLTIIAILHDPALAINQADHIL
                     MLKNGEKFAEMSAKAIAESCLLDELYEMKMGCRYCPHSGQYYLCPALAES"
     gene            complement(38812..39798)
                     /locus_tag="PXE92_000466"
     CDS             complement(38812..39798)
                     /locus_tag="PXE92_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5759750.1"
                     /translation="MKLHLTLIFTLIISLVICTHLGAMSLPLSAWHCNNAECESAAYI
                     LWQIRLPRLLGALFIGAALAISGATMQGLFRNPLVDPGIIGVSSGAALAAALYIVVIQ
                     PLLPESISYYALPIAAFLGGWLVTFMLYLLSQRNGQLHIAIMLLIGIALAAFSGALTG
                     ILIYVADDNQLRSLTFWSMGSLAGMNWQMVAMMAAVVFICSPLIWREHRALNALTLGE
                     EDAQYIGFDIAKVKRRLVFYVALLTGTSVACVGAIGFVGLVIPHLMRLLGGSNHRHLL
                     LNSLVCGAILLMIADTLARTLAAPAEIPIGIFTALFGAPFLAVMVWKSGKHI"
     gene            complement(39809..>40649)
                     /locus_tag="PXE92_000467"
     CDS             complement(39809..>40649)
                     /locus_tag="PXE92_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5759751.1"
                     /translation="FSFIALSMCLNTTKAAEKIVSTAGYASEIVAALGKADKLVGVDT
                     TSVKPQTIMEKKPKIGYRRQLSAEGILSLTPDLIILAPDAGPNAVIEQIKASGIPLLH
                     LGEKPSLAGIREDIQQIAKAIGAESEAKQLTETILADEKKLADIRSQHSTDKEVLVLI
                     DTASQGIFGLGKKSVGDHFLTLLNLNNSFNAEGNKPLANEALAASNADVILLASRNQA
                     KESATISKLAESSPQYAQLTNTQAGKKGCVFAINILDALGFGPYTAQYAHQILTTIQP
                     CLK"
BASE COUNT        12248 a         8168 c         8661 g        11572 t
ORIGIN      
        1 gcgatacccc aaaagaaaaa actaacttac gttagcttat atagatttga atgtttgaaa
       61 ttaagtggct ggggtactag gattcgaacc tagggatgcc gagatcaaaa cccggtgcct
      121 taccgcttgg cgatacccca acactaattt ttgttaatcg ataaatggtg cgggacgagg
      181 gacttgaacc cacacacctc gcggcgccag aacctaaatc tggtgcgtct accaatttcg
      241 ccagtcccgc aatggtggct acagcgagat tcgaacttgc gaccccaaca ttatgagtgt
      301 tgtgctctaa ccagctgagc tatgtagcca tttgcgttca ccatatcggt caacggagtg
      361 cattatgctg attttagggc tttccgtcaa atactttttt taaaaaattt gaatttttga
      421 ttcgcttgta tagttattcg tcgttttggc ttaaatctag cattttttgt ttataaaata
      481 atagcttata ttctgctatt tcaccgtttg catttctaat tttaattgag ccagtacagg
      541 ctcaacatcg gggaattgcc cttcccacaa agaaaacgca aacgctgcct gtccaaccaa
      601 cattcctaat ccgtcttggc acgctgttgc tccacaacgc cttgcataat tgagaaaagg
      661 agtttgcata ttgggggcat attgcatatc gtaaatattc gccgatgcta taacagattc
      721 aggcaattca acatatttgc cttgcagacc gagagaggtg gcattgacga ttaaattaaa
      781 cagttggttt gccaaatcgc ttaaacaagc ggtctgaatt ttgccaaatt ttgcaaattt
      841 ttcggctaaa acgaccgctt tctcctgcgt gcggttatat agagtaatct ctaaccccgc
      901 tttaagtaac ggaagtaata cgcctttggt tgctccacct gctccaagaa ttaaggtttt
      961 atgccctttt tgtaaccaac ctagccgttc caaatcagaa actaaaccgg ccccgtcggt
     1021 attatcggca tataaccgtc catcttctaa gcgtttaagc gtattacacg cctgtgccaa
     1081 caaagcggtt tcgctaaatt catctgccaa tttaaaggct ctttctttaa aaggggcggt
     1141 gatgttgcaa ccttttgctc cagaagcgaa aaaatcggct aattgttgct caaaagccgt
     1201 ttcatctcct aagttagcga tatattcaat gttgcgttgg gtttgtaaag caaagagttg
     1261 atgaatacgg ggggatttac tttgagcaat cgggttgccc cacacggcat atcggttcat
     1321 ttcggcttat ccttgtctaa aaatctgttg gctgaaaata tctcgaattt cggaagggtt
     1381 ttctctacct agcgtgtctg cgtgtaatac aggaaaatct tgaccaaact gatcgatgac
     1441 ttcttttgca ttgcggcaag gtggttctcc gctcaaattg gcactggtag aggtcaacgc
     1501 aacgccgctt gcctcacaca actgaaccac cgccggcaca ttacataaac gtacggcaat
     1561 agaatcaaat ttgccggtga ggtaacttgg cacagtattt ttaaccggta cgatccaagt
     1621 aattgcctgc tcgccaatat ggcttaggcg ttgccaagcc tgttccgtca ttcgagcttc
     1681 atcaatatag ggaagaagat actttaaatc agaagccagt aaaattagcc ctttttcctc
     1741 agggcgttgt tttaatacga gtaatttcct taccgctttt tcactttgtg gattgcagcc
     1801 taagccaaaa accgcttcgg ttgggtaagc tacaacttct tcttgcttta attgattaac
     1861 tatttctaaa aaattattca ttcggtttta attctgtttg gtgctggcaa cttttgttag
     1921 cacaaatggt gaattgcttg cccttaattt ttttgattgt agcgagttca caaccacatt
     1981 tttcacacaa gtggttaatc ggtcgagttg ctaatgtaaa tttgcaatta gggaagccta
     2041 tacaaccata aaatattttg cctgaacgcc cttttctagc aatcagttta tgttgcttgc
     2101 attcagggca atcaaactct tcttcaacct cagcttcttc gtgtacgatg aagtggcatt
     2161 cagggtaatg gctacagccg ataaaaatac cataattgcc ttgttttaat tggaggtttc
     2221 cgccacattc agggcaaagt tcatctaatt gcttaataat atgaccggct tgatgtaatg
     2281 gcttaatata atcacattca gggtaagctg aacaacccaa aaataaccct tttttgccct
     2341 gcttaatttg caacggcgag ccacattgtg ggcaagtttc ggtctgtttg gttgatttga
     2401 aaagtaccat attgatttgc taaataagcg taaattcaat cacaaaaaac gcattgtcat
     2461 tcggataaat ctcccgaata acttgtttca attcggctaa gctcatattt tcttgtttag
     2521 cgtgttgctc gtttaattca tcaaacacta taggtgttac cgatagcact ttaatattgg
     2581 cgaaaaatct atcggtttca ttagtaaaaa ccgctaattc ttggtttggt tgaaaataag
     2641 attctgactt gtctcgaatc gtaattgttt ttttaccgct taaaatatcg gcttcaaatc
     2701 ggctgaaaaa ggtaattttc tctctattca tattcatcgc tactgtaatc cagagccatt
     2761 aaatgactaa aatgatcgtt ataaaaacca cggctaacca taaatcgcca cattttctgc
     2821 tttgctttca gatcccatac aagcggtcgt tttttctcaa aaatttgctc agctaattca
     2881 aaccaatcca cttcggcgtt ttctaattct tggttaatta accaatcttt taccccttta
     2941 agttttagct cttgctttaa acggcgaggc ccaatgcctt gcattgaacg ataacggata
     3001 aaagtggtac aaaagcgttc atcactttgc cactgattcg cttgagcttt ttcaatcgct
     3061 gcatcaatct ccgtgagttc atactctttt tgctttagtt tttgccgaag ctcttgctcg
     3121 ctgtaatcac gctttgaaag taaatatagc agataattaa ccgctgtgta tttatttgtt
     3181 ttagtagtag atgttgtcat ttatcggtta taaataaaaa tgcgattttc acgttgagcg
     3241 aaaaccgcat aaatttaatt agagttcttc ttcactaaat tcatcatctg cattgtctgc
     3301 attttcagaa tctggagtag ccgtaaaagt tgggtttgaa atgagtagat ttcgaatatc
     3361 ttgctcaatt ttactcgcca cttcagggtg ttcttttaac catttgatgg cattattttt
     3421 accctgaccg attttctccc cttcataaga gaaccaagcc cctgctttat taatgaagcc
     3481 gtgagattcc gctaaaatga gtaattcatt catacgggca atgccctcac cgtacataat
     3541 atcaaattgg acttcacgga acggtggagc aaccttgttt ttcacaattt tcacttttgt
     3601 ttcgctaccg ataacctcat caccgtcttt tactacgcct gaacgacgaa tatctaaacg
     3661 tactgaagca tagaatttaa gggcattacc accagttgtg gtttcagggt taccgaacat
     3721 tactccaatt ttcatacgaa tttggttaat gaaaatcacc aagcagttgg tcgctttgat
     3781 atttgcggtt aatttacgca atgcttgtga cattaaacga gcttgtaagc ccatatggga
     3841 atcacccata tcgccttcaa tctctgcttt tggtgtaagt gccgcaacag agtccacaat
     3901 aattacatca accgcaccgg aacgaactaa cgcatcacaa atttctaatg cttgttcgcc
     3961 attatccggt tgtgaaatta ataatccatc tgtatctacc cctaacttac gggcgtaaat
     4021 aggatcaagt gcgtgttcgg catcaataaa ggcacaagtt ttaccatttt tttgggcttg
     4081 agccaccaca gataaagtta atgtagtttt acctgaagac tccggtccat aaatttccac
     4141 aatacgaccc attggtaaac caccaatgcc taatgctgag tctaaaccaa gagaaccggt
     4201 tgaaactgct tcaatatcaa gggcttgagt atcgcctaac ttcataattg agcctttgcc
     4261 aaattgcttt tcaatttgag ctaatgcggc tgccaacgct ttttcttttt gttccggatc
     4321 aatctgttta accggagtgt tcttttgact ttttttctct gccatattct atcctttgta
     4381 aacttttatc taaaagcaac cgcttgttgc tgcaaaataa ctgtatatta ttatagtatt
     4441 tacttatcca gttgcaagca tttttttagg attttcgatc aagatcacaa aaataaattt
     4501 gcgagcaagg caatgccctt ggttcctcaa agggattaag agcattaatc aacataattt
     4561 tttcatattg atgcaaatct tgcttggcta ttttggctaa aacgactttc ccttcatcaa
     4621 gcaatttact aagctgagtg cctttgagca aataatgttg cgggctatac cagattcctt
     4681 gttttaggaa cagtaaattg ccgatggagc aatcactgac gtagccatta ttgagaataa
     4741 tcacctcttc attttgtaaa atagggagca aatcaaaccg cttgcggtcg ctaaatttga
     4801 ggtgataatc ccaattttcc acctcaacca agcgaaaacg ttctactttt ttgggcgaat
     4861 agataaaaaa tttcagctca aattctgttg cgttgtaatc tattcggcaa cgtactttgc
     4921 cccgttgaga agcctctggc acaactaaaa tatcagcaag gctaaaacga ggttcacagc
     4981 caaaatattc ttgtgttgct tgctcaaaac gttgttgatg atactgtaag ttctgaactt
     5041 tgccgtcaat aatcgaaagg gtttcaaata gcggaaatcg gcacatagac tttctctaac
     5101 agttcattat attcatcagt taacacactt tgtgaggtaa tgccaccacc actatgaaac
     5161 acaagcccgt ttgaggtttg agcaatgtaa cgaattgcca ccgcactttc taagctctcg
     5221 ccatcaaaat aaccaaaaat accggtgtag taaccccgtt ttcctaattc tgcttgctga
     5281 ataatcgaaa ccgttttctc tttcggtgca ccgctaatgg agccggcagg tagtaatttt
     5341 gccaatatcg aaccgatatt ttcttgccaa ttttcaccta attcgccaca gatctcggaa
     5401 cttgtctgca aaattgcccc tcgatgggtt tctacttttt ccacataacg gtatttagta
     5461 acttcaatat ttttcgccac caacgccaag tcatttcgga tcaaatccac aatggtatta
     5521 tgttcggtaa actctttttc cgaagccatt aatttctgct cggcattctc ctcatttgca
     5581 ttaattgtgc ctttcatcgg gtaggaaaaa atgcggttat tttcaattcg cacaaagcat
     5641 tcaggggaaa aacagacgaa cctgccttgc aaataacatt tatattttgc tttgctggcg
     5701 gcaaaaattt ccgccaatga ataattggtt tcaatggcag tcgggtagct caaattcagc
     5761 aagtagctat tgccggcttg aatttccttt ttcactaatt caaacccggt ttggtattcg
     5821 ctaaacggaa tcggatttgc cgataattca aaagctttag tcggtttttc aaccggcttt
     5881 tcgagattcg atttgcaaaa aaattcaaaa aaaagaccgc ttgcgtgagc ctgttctagc
     5941 ggaaaaataa gtggcttttg ctgctcaaaa tcaattaaaa agaaaaaagg gcgttttgct
     6001 tgcccgtagt gattggcttg gtgaataaaa tcttgcatag aaaacacaat ggctgaaatt
     6061 ggctgaatca tcaaaagctc tgttataatg caaagcaata gatttgaaaa gcatttttta
     6121 aaaaaggttt taccgatgaa caacaccatt cattttcaag aaattgggat ctacatcgcc
     6181 cttgccgttt gtgtgctggt aggcgtttat ctctttttct tgaaatcccg ttatcagcga
     6241 aatgcctacg aattaagcca agatcttggc aaaatcaccg aaaattttga acaaattcag
     6301 caaaaatatg aggtgttggc tcaagaaaaa aatcagcttg agcagtgggc aattcaacaa
     6361 cagaccaaat atgaagcagt gagtgaacgt ttaaacgagc gagatgggca attgcaacga
     6421 ttccaacaaa aaatcgaact tgccgaacag caagaaaacc agctggaacg ctatattaat
     6481 gagctaaaag aacgtgtggg ttcttcccaa gcaaaggcag aaagtttgga agaacagcta
     6541 caatttagcc aaagttcact ctcaactaaa gagcgggaaa atcaagcgtt atttagccgt
     6601 ttaaacgagg tacaaaacga gctgaccgaa ctgcgtacta cgctttcgga aaaacaggca
     6661 aattttgaag cacaacaacg caattttatt gaggtaaaac aacagcttaa tgtggaattt
     6721 caacatttgg cacaacaaat tcttgacgaa aaaagcaagc gttttagcga aaccaatcaa
     6781 agctcgttag aagctctact gaagccgttc aaagagcaaa ttgaaggctt tcaaaaacgg
     6841 gtgaatgagg tacatagtga gtcgctcaaa ggctcggcaa atttagaggc tgaaattaag
     6901 cgggtgctac aaattggcgt ttcaatgtcg gaagaggcac aaaatctggc aacggcatta
     6961 aaaggcaata ataaaattgc cggcaactgg ggtgaagtac agcttgaaag tgccttacaa
     7021 tctgccggtt tactcgcagg cgagcattac caagcccaag agagttttcg tgatgaagag
     7081 gggcgacgtt ttgcccccga ttttgtggtg catttgccgg atcaaaaaca tctgattatt
     7141 gacagtaaag tctcgttagt agcgtacgat caagcggtca gatcagaaga aaattttgca
     7201 atttctcaag ccttagacga acattgccgt tcgctacgca atcatattga gggattgtct
     7261 aagaagaact acagtgcatt attaggcatt aaaagcccgg attttgtact gatgtttatt
     7321 ccgatagaac cggcttatat tgaagcgatg aagcacgatc cgcaactgtt taactttggc
     7381 tatgaacgca atgtgatttt ggtttctcac accaccttaa tgccgatttt acgcacggtc
     7441 gccaatttat ggcggattga acgaggcaac agcgaggctc gtgaaatcag cgaaaaagcc
     7501 ggcgaaattt acaaccaagt gtgtgcggtt gccgatcggt tagctaaatt aggtaacacg
     7561 ctaaataccg caaataatca atacaatcaa accgttacct cgttagtggg acggcaaggc
     7621 ttactgggca aagtggaacg attccaacat ctttcaagca aagcaagcca aattgtgccg
     7681 caggttgagc tgattgaaaa tgaggtggat actattaaat tggaaatggt atcgagagaa
     7741 ttattggaag aatagtcaaa tctctttatt ccctacaaaa atatggggtg atttgaaata
     7801 ctaaagaaaa taataaaatg ctaaaaaaac tattaatcat cgacaaccac gactctttta
     7861 ccttcaactt ggtggattta ctccgtaagc ttgatgtgcc ggcgaaagtg gtgctggttg
     7921 aagagcttga cctcaatgag gtggagcatt ttagccatat tttgatttcg cccggccctg
     7981 atgtgccgag agcctatcta caaacctttg cgatgttgga gcgttatcat caaaccaaat
     8041 caattctagg cgtttgcttg gggcatcaaa cgatttgcga gttttttggc ggcaagttgt
     8101 ataacctaaa cgatgttaga cacgggcagc aacgcacgct cactcaaatt gagcctaacc
     8161 ccatatttaa aggtttgcct aagcagttga aagttgggtt gtatcactct tggggcattt
     8221 tgcaaaattc gttgcaaaat acaccgcttg taccaaccgc agtttgcgat caaaatgtgt
     8281 taatggcgtt taaacaccaa catttgccga tttttggcgt gcagtttcac ccggaatctt
     8341 ttatcactga atttggtcaa caaatgttgg caaattggct tgagattaca caagattttt
     8401 agcgtgaaat ccgctataat ccgtcagtta tttacccttt taaaatctgt aggggcgaaa
     8461 aatttttcgc cttacttaat atgcaagaga taatttaaat gaaagattcg attatcaata
     8521 aattagaaag tttaagtgaa cgccacgaag aactacaggc gttacttggc gatgcctcaa
     8581 ttatttccga tcaagacaaa ttccgtgctt attccaaaga atattcgcaa ttagaagaag
     8641 tggttggcac ctttaaccgc tggaaaaagc tgaacaatga tattgaagag gctcaattat
     8701 tactcgatga tcctgatatg aaggatatgg cagcggaaga aattgcggaa aataaagccg
     8761 aaatcgagaa tcttgagcaa catttacaaa ttttattatt gccgaaagat ccgaatgatg
     8821 aatacaacgc cttccttgaa atccgtgccg gaacgggcgg tgacgaggct ggtatttttg
     8881 ccggtgattt ataccgtatg tacagccgtt attgcgaaag taaacgctgg cgaattgaag
     8941 aaatgtcggc aaatgagagt gaacaaggcg gatataaaga gatcatcgtt aaaatttcag
     9001 gcgaaggcgt ttacggtcag cttaaatttg aatcgggcgg acaccgtgta caacgtgtac
     9061 cgaaaaccga atcacaaggg cgtattcaca cctctgcttg cacggtagcg gtaatgccgg
     9121 agttgccgga aagcgagatg ccggaaatca atccatctga tctgcgaatt gacacctacc
     9181 gctcatcggg tgcaggcggt cagcacgtta ataccaccga ctctgcagtg cggattactc
     9241 atatcccgac cgggattgtg gtcgagtgtc aagatgagcg ttcacagcac aaaaataaag
     9301 ccaaagcgct ggcagtgtta gcctctcgga ttgtacaagt tgagcaagaa cgccaagccg
     9361 cagagcaagc ggatacccgc cgtaacttac ttggctcagg cgaccgttcg gataaaatcc
     9421 gcacctacaa ctacccgcaa gggcgtgtga ctgatcaccg tattaacctc acggtttatc
     9481 gtttagacga agtgatgaac ggcaaaattg atgaattgat acaaccgatt atcactgaat
     9541 atcaagcgga tcagttagcg gcgttgtcgg agcaaaatta attttattgt aagggtacac
     9601 tgtgtgtgcc tgccaaatat aaatttgcaa aattttgact atttttgatc gcttgtagtt
     9661 tctaaaaagt ttaaaaattt gaggaaaaca aaatgagaaa gttaggttta ttagcagtat
     9721 ttactttagt attatcagcc tgttcaaatt caacaaaaat tgaacaaacc attctttcca
     9781 agcaggatat cgtaggctct tgggtatgcg ctattaaata cgatgatcta aaagtaagca
     9841 ctttagattt ttctgaattt aaagctaatg gcgaaatgac gaatttcggt gatatttctg
     9901 atgagaattt tgagcccatt aaatttactt atgtaacagg agataaaggg aagtgggact
     9961 taaaaggaaa tcgattagtg attgattatg atctttctga acgtaaagta aaaagaacaa
    10021 caccaaaaaa atttttagag ttcttgaaac aggaagagcg taaagcctca aaaacagcta
    10081 aaaaactcct taaatatgaa caagggattt tcaatattct gagtgatcag aaaaatactg
    10141 aaaacagtaa aataatatta gatattttga agtttggtca ttcaagaatg gcgattcagc
    10201 aaaatatggg agacaaagtt tattcaggtg gttgtgtaac agctgataaa gcagaagagt
    10261 atttagatat cctaaaaaat agaaattcta aataatggat taccgagagt ggctcacttt
    10321 tgctgagcaa aaattacttg aaaatagcgg ggcagatcca tacctaaacg caaaatttga
    10381 tgcaaatttg ctattgcaag cagtcacaaa acgttcaaaa tcggccattt ttgctttttc
    10441 ggaaacccta ctttctgaaa gcgagcttgc agaattagcg gaaaaattag ctcggcgtgc
    10501 caaaggtgaa ccaatggcat atattttagg ctatcgggaa ttttggtcgt tgccgttaaa
    10561 ggtttcaccg gcaacgctga ttcctcgccc tgatacggaa cgactggttg agttggcgtt
    10621 ggaatatgct aacaagcggt taggaaatca gaaaatgttg caaattctgg atctcggtac
    10681 cggcacgggg gcgattgcgt tggcactggc gagtgaatta ggcgagaaag cccaaattat
    10741 cggggtggat ttccaaaatg aggcggtgca actggcagaa gaaaatcgcc gaaacttagg
    10801 cttaaatcaa gttacatttt tacaaagcga ttggttcagt tcgcttgcaa atcaacaatt
    10861 tgatttaatt gtctcaaatc cgccttatat tgatgaatcg gacgaaaatt tgacggtggg
    10921 agacgtacgt tttgaacctt taaccgcatt agttgccgat aataaggggt tgagcgattt
    10981 gcaaaaaatc atcgaaaatg caccgcttca cttaaaaccg caaggggcgt taatgctgga
    11041 acacggctgg aaacaaggta acttggttcg agatttattt gatttacact tgtgggaaca
    11101 ggtagaaact gctcaagatt atgccggcaa tgaccgagta accaaagcga ttttaaaata
    11161 aggcagaaaa tggacgatat tattgaagaa ttgttaaaag agttggaaga tccgaaagta
    11221 accatcagcg aaaccgagct gaaaaagttt ctttatcgtg aaattttacg attaactacg
    11281 ctcattgata agaatgtaag tgagcaacaa gtgtttggtc agatgtctgc gttggtgaaa
    11341 aaagctcgct ataacgtgaa tggcgaaggc gatgaagaga gaattaacca attacttcat
    11401 ttagtctatc gtgaatgggg ctttcattgc tactatgaag actatttcca caccgaaaat
    11461 ttgttgctaa atcaagtaat tcgcaaacgg cgtggaatgc cggtttcact tggggcggtg
    11521 gcgctttatt tatccgccgt attggatttg ccgctttacc cggttaattt tccgactcag
    11581 cttgtgttac gggctgaaat acaccagccg aacggggcaa ccaaagtgcg ttttatcaac
    11641 ccgtggaacg gtgaatttct caccatcgaa atgctgaata aatggctgga aggagaaatg
    11701 ggctttggcg tagaagttac ccctgatttg ttaagacgag cagaaccaca agagttgctg
    11761 gaaagggtcg aaactgtgtt taaaatggca cttacccgtg aaggcaaata tgaagaaacc
    11821 ttacgcttga ttgaataccg cttggcattt agcccggaag atccgtacga aatcagagac
    11881 cgaggaatgg tactggcaag tatggattgc taccaagcag cattagaaga tattaattat
    11941 ttcattgacc aatgccctga agatccttct gccgaaattt taaaaatgga agtgaaagga
    12001 ctgcaacaaa aaagccaaga aagtgtggtg cattaagctg agaagtagcc ccaaaggggc
    12061 tgagctatga ttaacctagt acggctctgc cgtgctaggc agaaaataag aaacaaggac
    12121 tccctatgac agataaaatt gtaaaagttg gcaatattga agtggctaat cacaaaccgt
    12181 ttacgctttt tggtggtatg aatgtgctgg aaagccgtga tatggcactt agagtatgtg
    12241 agcaatatgt tgaagtcacg caaaaactaa atgtgcctta tgtgttcaaa gcctcatttg
    12301 acaaagcaaa ccgttcttca atccactctt accgtggacc gggaatggaa gaaggcttaa
    12361 agattttcca agaattaaaa caaacctttg gcgtgaacat cattaccgat gttcacgaaa
    12421 tttaccaatg taaacctgtg gcagaagtag ttgatgtgat tcaactacca gcatttttgg
    12481 ctcgccaaac cgatttagtg gaagcaatgg ctcgtaccgg tgcggttatt aacgttaaaa
    12541 agccgcaatt tttaagcccg ggtcaaatgg ggaatatcgt agaaaagatt gctgaatgcg
    12601 gcaacgatca agtgattttg tgcgaccgtg gcactaactt tggctacgat aatctagttg
    12661 tggatatgct tggtttcggc attatgaaaa aagtgtcgaa aggttgcccg gtgatttttg
    12721 atgtgactca ctcattacaa tgccgtgatc cattcggtgc ggcttccggt ggtcgcagag
    12781 atcaagtaac cgaactggca cgctccggta tggcgattgg tttagccggc ttgttcttag
    12841 aagctcaccc ggatccaaac tcggcgaaat gtgatggtcc atctgcatta ccgctgtcaa
    12901 aattagaagc ctttgtttca cagatgaaag cgattgatga gttggttaag agctttgaag
    12961 aaattgatac ttccaaataa actttctccg cattaaatcc tttcctactt tctttgcttc
    13021 gccaaagaaa gtaggcaaag aaaggcgacc ctacttcgct acttttcttc gcttagtgtg
    13081 aatgggctta acgaaaaatt tacattcgct tcgctcagag taaattttcc tacccattaa
    13141 aacacgctca ggtagctcag aagggagtta gaaaggtaaa agacagaata ggagaaaaaa
    13201 atgctaaata ttgtttttct tgaccgtacc ggtattcctg ccactcacga tattcctcgt
    13261 ccgaattttc cacatacttg gacggaatat gccaccacct ctgccgatca aacttttgag
    13321 cgggtaaaag aagcggatat tatcattacc agcaaagtgt tactccagcg tgacttgctg
    13381 gctaaattac caaagctgaa attaattgcg atcacagcaa ccggcacgaa caatgtggac
    13441 ttagcggcag caaaagagtt agggattgca gtgaaaaatg taaccggcta ttccagcgtt
    13501 accgtgccgg aacacgtcat tggtatgatt tactccctga aacatcgttt agccgattat
    13561 caccgtgatt taattacgtc tgaccgctgg gcaacttgcg gccaattttg ctatgtagat
    13621 tacccgatcc acgatgtgcg aggctcaacc ttaggcattt tcggtaaagg gaacatcggg
    13681 gctgaagtgg cacggctggc acaagcggtc ggaatgcagg ttatttttgc agaacatcaa
    13741 ggcgcaactg aaattcgaga aggctacacc gcctttgaag aggtattcaa acaagcagat
    13801 attatttcac tacactgccc tttaaccgag cagactcaaa acctgattaa tgcagaaacc
    13861 ttagccttaa tgaagccgac cgcttatatt atcaatacgg gtcgaggccc actgattgat
    13921 gaacaggcat tgcttgaggc attagagcaa ggcaagattg ccggcgctgc gttagatgtt
    13981 ttagtgaaag agccgcctga aaaagacaac cctttaatgt tagccgcaaa acgtttaccg
    14041 aatttactga ttaccccaca cgttgcgtgg gcaagcgatt ctgcggttac aacactagtg
    14101 aataaagtga cacaaaatat ggaagagttt gtagcaacgg gtatgtagct tgaagtaggg
    14161 gctggtcctg tgccagccct aatattaata gaatgagagg gcgggtataa aacccgcccc
    14221 taccaatatc attttagaaa aacagatgaa tttaacccct ttttttattg cttttcgcta
    14281 ttttagatcg aaaagtgctg accgtttcgg gcggttagtc accaatcttg ccagccttgg
    14341 cattgtgctg ggcgtaatgg cattggtgat tgtgctgtcg gttatgaacg gtttggaaaa
    14401 tatgcagaaa accaatctgc tatccacctt gccgcacgct atcatcaccc ctcaagaggg
    14461 gcattttgcc aaaggtgaaa aactggctct acctgaattt gccaagcaaa gtgtggtgat
    14521 taaccgtgcg aatgtgatta tccaaagttc acaaggcatt aacgccggtc agttaatcgg
    14581 cgtggaaaat gccacagacg atccgttgtt agtggcggaa aatatccccg cattattgcc
    14641 tagcggtgaa tttaaggtag taattggctc tcgtttagcc aataaattga acgttacggt
    14701 aggcgataag ctccgcttaa tgatcactga aaacagccaa tatacgccac ttgggcgagt
    14761 gccggtacag cgtttgtttg aaatttcggg cgtttatcaa tctaatcgtg aagcgagcga
    14821 atttaccctc tttgctaatt tagctgatgt cgggcgtttg cttcgcatca gcgaagatca
    14881 agtacaaggc gtgcgtttat atttgcaaga tcctttccaa gttaccgaac ttagccaata
    14941 tttcgatgca gaacgctacc aaatcagtga ttggcgtgag caaaaaggcg aatttttcca
    15001 agcggtgaaa atggaaaaaa atatgatggg cttactcatc agcctgatta ttgtggttgc
    15061 aatttccaac attgtgactt cactcagttt gatggtggta gacaaacagg gcgaaattgc
    15121 aattttacaa acccaaggct taaccaaaaa acaagtgatg cagatttttg tgttccaagg
    15181 ggcgattgtc ggagtaattg gctcgattat tggtggtttg ctcggcgtat tgatcgccta
    15241 caatttagat cagattatcc tgctattaaa cccgagcatc catctgccta ccctaatttc
    15301 aggcacgcaa attgcggtca ttgtaggggt gtcgatgttg ctttcactcc tttgcacgct
    15361 ttacccggca taccgagcct caaaaattga gccggcacag gcattgagat atgaataata
    15421 agaacggaaa taaaatgaca gaattacttc gctgtgaaca tatcagcaaa ttttacgatg
    15481 agggcgaaca gaaagttcag gtgctaaaag aggtgtcatt ttcgatgaac gaaggtgagc
    15541 tggtagcgat tgtcggtagt tcaggttccg gcaaaagcac cctattgcac acattaggcg
    15601 ggctagatca gccaagcacc ggtgaagtct ggattcgagg gcaatctctg caacagctca
    15661 gttcagacaa attagcgtta ttgcgtaacc aaaacttagg ctttgtgtac caatttcatc
    15721 acttaatggc agactttacc gcccttgaaa atgtgatgat gccgatgctg atcggcaaac
    15781 agaacaaaac tgaagctgcc aatcgtgccg agaaaatgct acaagcggtc ggattagctc
    15841 atcgaatgac acatcgccca tcagcacttt caggcggcga acgccaacgg gtggcgattg
    15901 cccgagcgtt ggttaataat ccggctctgg tacttgccga tgaaccgacc ggtaatttag
    15961 accaaaaaac cactgaaagc atttttgagc tgattcaaca gctcaaccaa gagcagaaca
    16021 ttgcgttttt attagtaacg catgatttaa atctagcgaa taaactttca cgtagtcttg
    16081 taatgcgaga tggcgtgtta agcgagggga gcttatgagt acgccgtttt tcattagctg
    16141 gcgttaccaa cggggcaaac agaaaaacaa actggtttca ctgattgctc tcttttccaa
    16201 catcggtatt gcccttgggg ttgcggtatt aattatcggg ctaagtgcaa tgaacggctt
    16261 tgagcgagag ctgaataatc gtgtgctttc ggttgtgcca cacgctgaac tggtttcgtt
    16321 tcaaggcaat cagcctcaac caatttttga tagcaaaaaa ttagaggcat tgataaaaaa
    16381 atcgcaaaat gtgaccgcta gttcgccttt tgtcagcttt accgccttaa ttgaaaatgg
    16441 ggctcagctt aaaatcgccc aggtgcgagg ggttgatcct aaaaagcaag atcaggccag
    16501 ccaattaagc caatttattc cacccgagca atggcaagcg ttcaatcagc aatttcaagc
    16561 cgatgaagat ggcttgattt taggagccgg tattgccaaa gcgttagaag ttgaggcagg
    16621 agacgaagtt acgcttttaa ttcctcagcc aacagaagac ggcaaattag cccagccctt
    16681 gcgttttaac ctaaacgtaa ccggcatttt gcggctagat gggcagctgg atcacagtta
    16741 tgccttaatt ccactgaata aagctcaaga gctgatggaa taccaagcga atgaagtgtc
    16801 agggcttgaa atcagccttg ccaatccgtt tgatgtacaa cagcttgaaa tgccacaact
    16861 taacggctat acccaaccgc tttatttgaa tacgtggatt gataaattcg gttatatgta
    16921 taacgatatt caactgattc gcaccgtgat gtacattgca atggttctcg tgattggcgt
    16981 tgcctgtttt aatattattt ccaccttgat tatggcagtg aaagacaaac aaggcgatat
    17041 cgcgatttta cggacactgg gggcaaataa cggttttatc cgccgcattt tcttatggta
    17101 tggcttaatt tcaggtatga aaggggcgtt attcgggctg attttaggtg taattttatc
    17161 gctaaattta accgctatta tcaaagcgat tgaagcattc tttgaggtga aattgctttc
    17221 agacggggtt tattttgttg atttcttacc aagtgaatta cattggcaag atgtcgtcta
    17281 tgtattggca gccacgatta tcctaagcct ttttgccagc ttataccctg ccaaccgagc
    17341 cgctaaatta gaaccggcaa aagtgttaag tgggcattaa tcattttcct attctaataa
    17401 aaaagcagct acccctcgat tatgtcagaa aggtagctgc ttttatttat gttattactc
    17461 ttcgcctaat aatttcaact cacgagcctt aatttggttt tttagaattt caactaagtc
    17521 tgaaacgagg taagtaccta agtctgcacc tttacgggta cgcacagaca ctttaccttc
    17581 ggcgatttct ttatcaccgc aaaccaacat ataaggcaca cggcgtaagg tgtgctcacg
    17641 cactttgaag ccgacttttt cgttgcgtaa gtctgctttc acacgaatgc ctgcatcaga
    17701 aagctgtttc accacttgtt gcacataatc tgcttggctg tcggtaatgt tcattaccac
    17761 tgcttgggtt ggggcaagcc aagttgggaa gaaaccggca tattcttcgg tgataatccc
    17821 gatgaaacgt tcgatcgagc ctaaaatcgc acggtgaatc attaccggtg tgcggcgacc
    17881 attatcttct gctacataag aggctgctaa acgacccggt agagcgaagt caagttgcac
    17941 tgtgccacat tgccattcac gtcctaagca atcacgcaat gcaaactcaa ttttcggccc
    18001 gtagaatgca ccttcgcctt cttgaatttc atattcaagt ccgttgttgc gtaaggcgtt
    18061 ggctaagcct ttttctgctc tgtcccacat tgcatcatca ccgatacggt tttccggacg
    18121 ggttgaaagt tttactgcaa tgttagtaaa accgaaggtg ctgtaaatgt cgtacaccat
    18181 tttgatacag ctgattactt ctgactcgat ttgttcttca gtacagaaaa tatgggcatc
    18241 atcttgggta aaaccacgca cacgcattaa gccgtgtaat gaaccggacg gctcgttacg
    18301 gtgacacgaa ccaaattccg ccatacggat cggtaaatca cggtaagatt tcaagccttg
    18361 attaaagatt tgaacgtgac ccgggcagtt catcggctta attgcatatt cacggttttc
    18421 cgattgggta gtgaacatta aatctgcgta gttttgccag tgtccggttt tttcccaaag
    18481 cacacgatcc atcataaacg gaccttttac ttcttggtaa tcgtactctt tcaatttggt
    18541 acgcacaaaa gtttcaagtt cacggaaaat cgtccagccg tcattgtgcc agaacaccat
    18601 acccggtgct tcttcttgca tatggtataa atctaacgct ttaccgatac ggcggtggtc
    18661 acgttttgcc gcttcttcca aacgttgtaa atattcggct aattgttttt tatcagccca
    18721 agctgtaccg taaatacgtt gtagcatttt atttttgctg tcgccacgcc agtaagcacc
    18781 cgctactttt tgtaatttga agtggtggca gaaacgcata tttggtacgt gtggaccacg
    18841 gcacatatca atatattctt cgtggtgata taacgcaggc gttgccgtac gttcaatatt
    18901 ttcatctaaa atcgccattt tgtatggctc accacgtttc tcaaaggtat ctcgagcttc
    18961 ttgccagctt accgggcgtt ttaccacgtc atagttggtt tttgccagct ctaacatacg
    19021 cttttcaaga gcgtctaaat cttcttgagt caaagagcgg tctaaatcga tatcgtagta
    19081 gaaaccgttt tcgatagtcg ggccgatagc cattttaacg tctgggaata attgcttgat
    19141 ggagtgacct aacaagtgag cggttgagtg gcgaatgatc tctaaaccat cttcgtcttt
    19201 ggcagtaatg atttcaagtg tgctgtcttg gctgatgata tcagacgcat cacggcgttc
    19261 accgtttaca cgaccggcaa tggtggcttt cgctaaacct gccccgatag attgggcaac
    19321 ttccattaca gaaactgggt tgtcaaatga acgttgtgaa ccgtccggta aagtaataat
    19381 tggcataata aatccttaca gtggtaatcc atacgagaga ttacttgtgt tgtttgaatg
    19441 aaaaaaccgc ctacaagcgg tcttttttga ttaaaatttt gcaatttgct tattatttcc
    19501 cttacaagtg gggaataaaa gcactgaaat tctagcataa aacaaagaaa aattaaactt
    19561 tgctgttttc agcggcccct tcatcaagct caatattttc attttctgtt tgtggatctt
    19621 gttcaagtat ttcaagctga gcctggtact cttgtaccgc ttcttcatca aatggaataa
    19681 gtgcgtcctc aacaacttca atttcttcaa gtgggcttgc ggttgcaatt ggggtagcat
    19741 attgcatctc tgctcgttcc gctttcggaa ttgatttggt gcggaaagca caaataaata
    19801 aactaagtga gaacagtcca aaaagtgcat aaaagccata ttcagcggaa aggctcatcg
    19861 caaaaccgat aagcggtgga gcaactaacg cccccacacc atagcaaaac agtaaacccc
    19921 tgcttacttc aaccgtgttc atattattcg gcaattcatc gttggcacgg gcaatgctca
    19981 aagcatataa gctaaacaga ctacagccaa agaaaaaggc gataatatac tgtccccagg
    20041 cggtcaaatt ttcttggaaa attgcaaata atccggcaag tgcggttaaa gtggcaatca
    20101 ctgaacaagc taaaatggcg ttacgtctgc caatacgatt cgataatatc gccatcggca
    20161 tttggctgat aaaaccaccg atcatcgaga taatcaaata aagcgagatt tcacttaatg
    20221 aaaagctaaa cttcagcaga aagactgacg ccattgtaaa aaagccgttt accaacattc
    20281 cgctaataaa gctggttgct aaggctaacg gtgaaatcgc aaatagttta ggaatactaa
    20341 tgcgctctcg agccggaata tcaggctgaa ccattttagt taaagcaatt gggatcatcg
    20401 acatcacaac caaaatggta gataagataa aaatgtttcg gctactaagt tctaaactta
    20461 ataaacttac gcctaaaata aaggcgagat agaagataat gttataagtg gcaagcactt
    20521 tgcctctggt atcgacattg gttttttcgc ttaaccaact ttcgactaaa agcagcaagc
    20581 tataatgaca gaatcccaaa ataattcgta acacgcccca gatccacaaa gtatcaatca
    20641 taatatgacc gagagcggcg atagcaaaaa cagcacagaa aacgctaaat gaacggatat
    20701 gcccaacact tgatacaatg cggtgagcaa aaatagtgct taatgccgcc ccaataaaga
    20761 aagcagcgtt aagtaaaccg atgatgatgt ccgttatccc catttctgcc agtttgatcc
    20821 ctgctgaatt tagaaataaa ccgtagccga aaaacagaaa aaagatacct gaataaaggg
    20881 agtaaaattt agtgctattc atcaatgctc cttcaaacat tctgccagta ttaaatcatt
    20941 gtaccgattt aatacctttt aggcaaaaaa gttattatta gcgttgagaa aataactttt
    21001 ggctattttg attaaaaaat caaatgaagg tgattttgaa atgtagtaaa aaatagagca
    21061 atcagaattg aaaaagggtt tgccgtaaca aagcctttag aaagattaga gtttcgagaa
    21121 gaatttgtag cttgggctaa ccaaaacact tgctaggagt gctttaagca caccacctaa
    21181 aataaatgga tataagcccg cttgtaatac tgtgccttct ggtacaaaga aagttgagcc
    21241 aagccgaaag caaaggtgat cacacttgca attaaggcga caaataaact tttccaaaaa
    21301 gagtttaata cgcctttatc gctataatag cctaagaaat aggcggttgg aatatagcct
    21361 aataagtatc cgcctgttgg accaaagaaa tgatggaaac ctgaagcacc gccggcaaag
    21421 acaggtaaac caatcgcccc ttcaaaaaga taaagtaata ctgcagcagt tgcggcttta
    21481 cgacccattg caaaaccaac cacagttaaa gcaagtgttt gccctgtaat gggtacaggg
    21541 tacatcggca cagaaatttg tgcaaaaata gcaagcagtg ttgctccaat aaaagttttc
    21601 aaccaaaatg tagttatact attggcttct agccaacgtt tagtttgaat taattgcgta
    21661 gtgaacataa tcctctcctt taatatggtt aaaatgttct caaccgatta tataagaaga
    21721 tgtcttttag ggtaagagtg aatttaaaat ggtaaaacca gtttatattt attgtgatga
    21781 aggtagcagt gaaattggtg ttcaatcact gttattggca gtaaaacagc atttacagcg
    21841 tccggcttat ctcatcaatg ccaaacaaat tattcaaagc aagttttccg atggctgttt
    21901 attaatcatg cccggtggag ccgatttacc ttactgcaaa aaattaaacg gagaaggcaa
    21961 tcgtagaatc cgccaattta ttgaacaagg tggagcttat ctcggtatct gtgccggagc
    22021 ttattatggc tgtgctgaat tgaattttgt agggcgtgac tatagcgtaa atggtaatcg
    22081 agaactagct ttatttaatg gcattgcggg cattgcgaaa ggcagtctgc cgcagtttac
    22141 caacgggcaa ctttacgata aaaacattgg tagcaaagcg atagttgaag taacacttgc
    22201 agagggtgga aaaatgccgt tttattatca cggtggttgc tgttttgaac caaattcaac
    22261 aacagtgatt tacaacccgt tggcttatta tcctgatggc tcagtagcaa tgatagaggg
    22321 agagctaggg cgaggttact atctgttgtc gggtgtacat tttgaattac aagcggtcgt
    22381 ttattggcaa aaaattgtaa attgctgtga aaatcttgac ataaaaacac aagaagaagc
    22441 aatttgctct aattttaatg taaattatgg ctcgcaaatt tggcaacatc taaagcaacg
    22501 actaaatcaa gcgtaaaaaa ataacctttc gctattctgc caaatggttt ctgcaatcag
    22561 atttggtgat tctgttctta attcacatag actattgaaa gtcactaaaa gccgttccgg
    22621 tcggttcggc tggccttgaa agccaaacac cggcatatcg ggcgagtcgg tttccagtag
    22681 taaactttca agaggtagtt tgcggatagc ctcacgggtt ttgttagcac gttcataggt
    22741 aatagttccc cccacaccaa ttttataacc gagatcgaca aaacgttttg cctgttcata
    22801 gctgccggca aagccgtgaa ccacaccggt tttggttagt tgggcttttt tgaggaacac
    22861 aaaaagttga tcgtggcttt tacgtgaatg aagattaacg ggtaaattaa attttttcgc
    22921 aagggaaagt tgtgcctcta aaaattcaca ttgctttttc cataattcag gggtagaaac
    22981 ttcacttacc gctttttcca aaccgatttc ggcaatagcg gtacactgtg gatcttgttg
    23041 gcttagcaaa ttttccaata agattaaatc ttgttgttgg tgctgttgaa tatacagtgg
    23101 atgcaaccct aatccataca ccaaattttc cggtttttgt ttggcacaag cggtcacttt
    23161 tgcaaaattt tttgcaaata cggcaacgat aagaatgcat tcaacctgat gctgtttggc
    23221 attctcaacc aattccggaa tgcttaaatt caggctttct gcgagatagt cgaggtgagt
    23281 atgagtgtca aaaaatcgca taataaaacc aataaaaacg gggactagat tgtccccatt
    23341 tttagcattt tacgcaagca attagtttgt tacataagca tcttcatcac gagcctcaga
    23401 tggcttgagg aaagcaaaga agcaaataac acaaactacc gtaatcgcaa aaccgatata
    23461 aactgataat tcataatcta aaccgaagcc gattttgttg ttcgcaaggt aagttgcaca
    23521 cacggtagtg ataaaccatg caggaatcga gcatacccag tggaattttt tatagcggta
    23581 taagtaacct gcggcagtcc ataacataac cattgcagtc atttggtttg cccaagtgaa
    23641 gtaacgccat aatacgctga aatcaacttt tgagacaatg aaaccaagta cgaataatgg
    23701 tacggcaata tacaaacgtt ttactaaggt acgttgttct aaaccaaaga tttccgctag
    23761 ttgtaaacga gcggctcgga atgcagtgtc acctgaggtg attggtaata ctacaacgcc
    23821 taatacggca aaaataccac cgataaaccc taagaagtgt aacgagctgt catataccac
    23881 tttagacggt gaaccggcag agatcgcatc ttgtaaggct tgtgggtttt catagaatga
    23941 aagacctact gcacaccata ctaatgcaat taccccttca gtaatcattg caccgtagaa
    24001 aataaaacga ccttctttct cattttgcgc acagcgagcc attaatgggg tttgggttgc
    24061 gtggaaaccg gataatgctc cgcaagaaat agttaagaat agtaatggcc aaattggaac
    24121 atcacctttc acttggaagt tttgggtgaa tttttcccac gttaagcctt gaccgtctgc
    24181 attcactgta cggaagaagt cgataggatc agtcgcactt aagtgagcgc tgactagacc
    24241 atataccata cctacagaca taaagagtaa taatgctccg aagaaaggat aaattcgacc
    24301 gatgatttta tcaacaggta gtaatgtagc aagaatatag taagcaaaaa tgattaacgt
    24361 ccacacagaa atcacggttg ctttatccat accccaaacg gttacgccac ctgatgctac
    24421 agattcttta attgcttcaa catcacctaa ttccattgca ctttgggttg cacctgcaat
    24481 atccatggtg atggtagaga gtaactgagc agggcttgca acgaaaacta cgcctactaa
    24541 taaaagcaag atgagcgcca ttacgttgat gaataacttg actggacgac ccaagaattt
    24601 ccctgccaga tttggcatcg ttgcgccacc gttgcggata cttaacatac cacagaagta
    24661 gtcgtgtact gcaccggcaa aaatacaacc aatcacaatc caaagcattg caactggtcc
    24721 gtataaggca ccaagtattg gtccaaaaat agggccggta ccggcaatgt ttaataattg
    24781 aatcagccaa atcttggttt tagacattgg catatagtca acaccgtcgt tcattgcata
    24841 agccggcgtt gctcttttcg ggttaatcac gaagattttt tcaatgattt ttccgtaagt
    24901 aaagtagcca agaacaagca cggctacaca gaaaaagaac cacaacatag tagaaatcct
    24961 ataaattgag ataaatgatc atttttagca gaactgataa aggcgtgcca ttgtaagtga
    25021 ggagtgagga taaagtaaaa tgaattgtta gatttgtgtg aataatttac tgaaaatgtg
    25081 aggttcatca aaaaatccct ttgttctgcg tcaatcaaag ggacttttta aagttaaata
    25141 tcgaattttt gaattttcgc ttcaatgcct tgggcatcta atccaagatc ggcataagct
    25201 tcagcttgag tagattgggg aacgaaaaag tcaggaatac caagcattac aagcggtttg
    25261 attttgccga tattttgcaa atattcattc acaaaactac ctgcgccacc ttgaatagca
    25321 ttttcttcaa gcgtaactaa caactcgtgt gaatccgcca ctttttgaag taatgcttca
    25381 tctaatggtt taatgaaacg catatctacc aacgtgtagt tatgtttttc agccacaatc
    25441 tttgcttcat caagcaaagc accaaaattt aaaatcgcaa cttttttacc ttcacgaata
    25501 atgtttcctt tacctacttc aagtctttgc attggctcaa gttttacccc tttagcattg
    25561 cctcgagggt aacgaatagc acttggcgta ttcatcgtgt aagcggtata aagcattttt
    25621 cgcatttcat tttcatcgct cggtgccata atggtcatat tgggaataca acgcataaaa
    25681 cttaaatcaa atgcaccttg gtgagtttgc ccgtcagcgc cgacaattcc ggctcggtca
    25741 atcgcaaaaa tcaccggcag gttttgaata gcaacatcgt gaattaattg gtcataagct
    25801 cgctgcaaga agctggaata aattgcgact accggtttgt aacctgcgat tgctaagcct
    25861 gccccgaaag tcactgcgtg ttgttcggca atcgccacat caaaatattg ttcagggaaa
    25921 cgtttggaaa attctaccat tcccgagcct tcacgcattg ccggcgtaat gccgataatt
    25981 ttcggatcac gctctgccat ttcacatagc caatcgccaa aaatattgga ataagtaggt
    26041 gctgcttttg attttggtaa ctcggctgcg gtagggtcaa atttcggaac gccatggtag
    26101 ccaatcggat cattttccgc aggtgtgtag cctttgcctt ttttcgtgcg aatatgcaga
    26161 aattgagggc ctttcagctc acgcatattg ctcaaggttt tgactaactc gtcaatatta
    26221 tgtccatcaa tcgggccgat ataattaaag cctaactctt caaacaaagt gctttcaggg
    26281 gagaaaatca cccctttcat atgctcttcg ctttttttca taaagttttt gatggtaggc
    26341 actttatcta aaattttctt actgccgtca cgcactgaag tatagagcga accagaaaaa
    26401 atgcgggcaa ggtggttgtt taatgccccg acattttcag agattgacat ttcattatca
    26461 tttaagataa ccaacatatc ggtatgcaat gcacctgcgt ggtttaatgc ttcaaatgcc
    26521 attccggcag tgattgcacc atcaccgatt acacagacgg ttttacggcc ggcattttct
    26581 ttttctgctg ccaccgcaat gccaagtccg gcactgatcg aagtagaaga atgcccaacg
    26641 cttaacacat cgtaagggct ttcttcacgc caagggaagg ggtgaatacc atctttttgg
    26701 cggatagtgt gcatttgatc tcggcgccca gtaaggattt tatgtgggta agcttgatga
    26761 ccaacgtccc aaattaattg gtcgaaaggc gtttgataaa cataatgcaa agctaccgta
    26821 agctctacta cccctaagcc agaggctaaa tgtccgctag tttgactgac tgattccaat
    26881 aaataggctc gcagttcatc aactacggtt tgaagctggt ctttagaaag taaacgtaaa
    26941 tcttccggtg agttgatttc gcttaacaga ggatacttct tttccataat gttttattac
    27001 ccacaaccat caaataatag atgatattaa attaagcttt gagttcttcg gtcaaagtag
    27061 gctgaatgct atttaaaatt tctttaacca cacggccgtt accaacaacc agattacctg
    27121 ttttcaagta atctgttccg ccaacaaagt tagtcacaat tgcaccggct tcacgggcaa
    27181 taagttcacc ggcggcgaaa tcccacggtt ttaagccgat ttcaaagaaa ccatcaacac
    27241 gacccgctgc aacataggca agatctaaag cggcagaacc ggtacggcgg aaatcagcta
    27301 ctccgttatt cattaagcct tcaagcatat ttaaatgtgc atcacgatgt ctgatgactt
    27361 tgaaaggaaa accggttgca attacagtgc cttttaaatc acggcgttct gcatcaatgc
    27421 gtaaacggaa ctcgtttaat ttagcccctt cgccacgcac cgcagtgaaa agctcgttac
    27481 ggataggatc gtaaactacc cctactgttg tacgtccgtt ttcacgcacg gcaatcgaca
    27541 cagcaaaatg aggtaagcgt tttacgaaat tggttgtacc atctaatgga tcgatcaccc
    27601 attgtacatt ttcattgcta ccgtttaaca cgccggactc ttcggtcacg atcgagtgtt
    27661 cagggtaaga tttacggatc acatcaataa ttgccgcttc cgctgcttta tcgatttcag
    27721 tcacataatc attcgtattt ttttgtaaaa cttgtgtatc ttgaggcgat tgttcatagc
    27781 ctttggcaat aatattgcct gcttttcgtg ccgcacgaat agcaatgttt aacattgggt
    27841 tcatatttcc accagatttt aaagaacata ataaagcacg aattataaag aatgtagcga
    27901 aataaagaaa caacaagcgg tctaatctgt gaaaaatttt gcaaaaaaat ggctttttct
    27961 aaccgcttgg agtttggatt cgttataata cctcccattc aagccaccca tttaggtact
    28021 aaaaatgcaa tttaaagaaa ataaccaacc tcgttttaaa cacagagaag aacgccgttc
    28081 agatgagtgt tccccccgtt tttcagataa aggcaaaatg cgaggaaatg aaggtaaaag
    28141 tgacagaccg cataagctac attttaagcg tgacgaggct tattcacgct ctgagcagat
    28201 ttatccagca gaaggcaaaa aagccagtgg tgaaggtagt gtgcaaattt gggtaaaagg
    28261 tgggaatagc tcagttaaag agaaaaaaaa cggcccgctt tcaccgagag cgcctgagaa
    28321 aattaagaaa aatcgcttgg aagagatgaa agtctatggc gaaaatgcct gtatcagttt
    28381 gttccaacaa cgtcctgaat ctattgtacg tttatgggca acagtggagg gggcaaaaaa
    28441 attaggcgat ttaatgagct atttggctca gcacaaaaaa gcctatcacg ttattgaccg
    28501 tgaagagatg gagcgagtca ccggtactga acatcacggc gatatgtgct tattggtgaa
    28561 aaaaacggct tcatttgtgc tagagggcta tttacaagtg ccgaaaaaac aagattgctt
    28621 ggtactgtta gatggtgtaa acaatgctca gaatgtgggg ggaatcatca gaacgtgtgc
    28681 tttttatggt gtgaaaggca ttattactga aaatgtggat agcttaaact ccagtgctgc
    28741 agctcgtgtc gcagagggtg gtttggaatt tgtgcgagcg ttagaaacta aaaacaagca
    28801 tattgctttg gtacaactcc gccaagccgg ttatcaaatt gtccacctca cacgccataa
    28861 gcaagcccct tctttaacca aaattaagct ggcggaaaag gtggtttttg tattaagtga
    28921 gattcctgca agtgatgtgg cttacgcaga agacacaaca atacagcttt cctttaataa
    28981 tccgttaaat agtggtttaa atgtggcggt aaacgcaggt attctactta atcaatggta
    29041 tcaaacccac attctttaag gaattgaaat gaatcagcaa aaaccgtttg aagtgattgc
    29101 gattgttggc acacctcgcc acgacagtgc atttgaaaca catcttgccg tttataattg
    29161 gttaaaagat cgtgattatc aaattttagt ggaaacagag gttgccactc agttacagct
    29221 taaggaaagc tacagtttag atcagattgg gcagcgcgca gagttggtga ttgtgatagg
    29281 tggcgatggt aatatgcttg gcatcgcccg agctttggct aaataccgag tgccactgat
    29341 aggcattaac cgtggcaatc tgggtttttt aaccgatatc gcacctcaaa cggcttttga
    29401 acagctttat agttgcttag tcaaaaatga gtatgtgatt gaagagcgat tcctgttaga
    29461 ggctttcatt gagcgcaacg gtaaaattat tgccgcaaat aatgccttga atgaaattgt
    29521 ggttcaccca acccaagtgg ctcgaattat tgaatttgaa gtttatattg acggaaaatt
    29581 cgctttttca caacgtgcag atggcttgat tgtggcaacg cctacaggct caaccgccta
    29641 ttcactttct gctggtggcc cgattttaac cccgaatatg aatgcaatgg cattagtgcc
    29701 gatgcaccct cacactcttt cttctcgtcc tttggtggtt gatggcgata gtcaaatttc
    29761 gcttcgtttt gccaaatata atacccctga tttagaagtg atttgtgacg ggcaggtgaa
    29821 tatgcacttt acgcctgaag atagagtctt ggtgcgtaaa agcccggata aattacagct
    29881 gctccattta aaagattata gctactttac tgtattaggt tctaaattag gctgggcaag
    29941 taagttgttt taaacacaag cggtgttttt tctgattaaa tttgcaaatg caatatgaat
    30001 tgatttcata tacatttcaa aaatatatca tttttattca ataaaaattt gtggttcaat
    30061 aagctatctg aaaaataaag gggacaataa aatgacaaca aattttaaat gccaagtgca
    30121 tactattgaa tttaatgaag attaccaacc ggagcaaagc acccgtttaa ccaccaactt
    30181 tgccaacctt gcccgtggcg aaaaccgcaa acagaacctg caaaatgcga ttgcgatgat
    30241 caataaccgt tttaacgatt tagcgaactg ggataacccg aatgcggatc gttattcggt
    30301 gaaattggat attgtctcac tggatattga tgtggaaggc aaaggcgagt ttttccctgc
    30361 gattgagtgg ctgaaaacct atgttatcga ctacaaaacc ggcaaaacca ttgatggcat
    30421 tatcggtaat aacttctctt cttttgtgcg tgattacgat ttcagcgtat tgttgttaga
    30481 tcacaataaa gacaaaccgc aatttagcgt gccggaaggc tatggcgagt tacacggcaa
    30541 gctgtttaag catttattgg catcgcctga atataccgca aaatataaaa aaccaccggt
    30601 gatctgttta agcgtggcaa ccacccgtac ctacacaaga accactaacg ttcacccaat
    30661 tttaggtgtg gaatatctgc aagatagtta ttcattaact gatgcctatt ttgcgaaaat
    30721 gggcttaaaa gtacgttact ttatgccgcc aaaatccgtt gcaccctatg cgttctactt
    30781 tgatgagaat gcagatttac tcaatgatta cactaactta gagctaatca gcacgattgc
    30841 cacaatggaa gcgttccaaa aaatttaccg tccggaaatt tacaatgcca attcggtcgc
    30901 agggcaggtc tataaaggca gcctgactta ccaagattat tccgtcacca aagtggaata
    30961 tgaccgtgaa gaacgcaccc agttggcgat caaacagggt aaatacaccg aagagcattt
    31021 tattaaacgt taccaagcga ttttagaggc ttgggcgacg gaggaataaa cgtagggtgg
    31081 gcgtaagccc accataaaat gagatataac caatggtggg cttacgccca ccctactttt
    31141 tataggaaaa ttcaaaatga gcaacattct tctcccaacc tctaccgccg gcagcctacc
    31201 aaaaccttcg tggcttgccg agccggaaaa actgtggtca ccttggaaat ttgaaggcga
    31261 ggaactactt caagccaaac gtgatgccct ccttgtttcc cttgccgaac aaattgcggc
    31321 agggattgat attgttagtg atggcgaaca gacccgccag cactttgtga ccacctttat
    31381 cgagcatttg gaaggggtgg attttagcaa gcgtgaaatc gtgcgcattc gtaaccgtta
    31441 cgatgccagc gtgccgagcg tggtgggggc agtttcccgc ccgaaatcgg tgtttgtgga
    31501 cgatgccaaa ttcttgcgtg cgcataccga caaaccaatc aaatgggcat tacccggccc
    31561 gatgacaatg atcgacactc tctatgacgg tcattacaaa agccgtgaaa aattggcgtg
    31621 ggaatttgcc aaaattctca acgaagaagc caaagagttg gaagcggcag gggtggatat
    31681 tattcaattt gacgaaccgg catttaacgt cttcttcgat gagctgaacg actggggcgt
    31741 ggcggcgtta gagcgtgcgg cggaaggctt aaaatgcgaa acggcggtgc atatctgcta
    31801 cggctacggc attaaagcca ataccgactg gaaacagacc ctcggcaacg aatggcgtca
    31861 atacgaagag agtttcccga aactgcaaca atcaaaaatc gacattatct cgttagagtg
    31921 ccaaaactcc cgtgtgccaa tggacttaat cgaattagtg cgtggcaaaa aagtaatgct
    31981 gggagcgatt gatgtggcta ccaacattat cgaaacaccg gaacaagtgg cagatacgtt
    32041 acgcaaagca ttacaatttg tcgatgcgga taaactttat ccaagcacca actgcggaat
    32101 ggcaccactt tcacgccaag tcgcacaagg taaattacag gcactcagcc aaggggcagc
    32161 gatattgcgt gcggaattcg caaaataatt ttgcgatctg catcgaaaat atcaactttg
    32221 ctttttgctc gtttccagat tttcttccaa aataacagga aatgacggag gcactatgct
    32281 aaatctattt aaaaagccaa ttaagaaaag ctcctttgag gcttgggcaa aactaatgga
    32341 cgatgtggca aaagttgcaa ttttagcaat tcctgttatt ctctatggag aatattcact
    32401 gctaatgaaa tttacacact caattacctt atttgcagta gtttattttt tgttagcaac
    32461 ggcaagattg tttcgagaaa cagcagagga gatgtaaatg gacggattga caatcggatt
    32521 atttcttttg cttgcatttt catttgctgc ataccaatgg gcaaagcatt taaaagatca
    32581 taatcattaa ttcaatgaat aatactaagc ggtcatattt ggtaaatttt ttacaaaatg
    32641 tgaccgcttg tttttctttc actcgaagtt aatttttata taaataatac tatctatgaa
    32701 actaaaaaat gcgtaaaata acgtgaaatc aacttacgca aacgtttact taagcttatt
    32761 aggagtccaa aaatgttaaa acgtgatatg aatatcgctg attacgatgc agtattatgg
    32821 caagccattc aagatgaaga tcgccgtcaa gaagaacata ttgaattaat tgcatctgaa
    32881 aactatgcaa gcccacgtgt aatgcaggct caaggctcac aattaaccaa taaatatgca
    32941 gaaggttatc cgggtaaacg ttactatggg ggttgtgagt atgtggatat tgtagaacaa
    33001 cttgcgattg accgtgcgaa agcattgttc ggggcagatt atgccaacgt tcaaccgcat
    33061 tcaggctcac aagcgaatgc agccgtatat atggcgttgc ttaatccggg tgacactatt
    33121 ttaggtatga gtttagcgca cggcgggcat ttaacccacg gtgcttcagt tagcttctct
    33181 ggtaaaattt ataaagcaga acaatacggc attactgatg aaggcttaat tgattatgaa
    33241 gcattacgca aacaagccca agaagtgaaa ccgaaaatga ttgttgctgg tttctctgct
    33301 tattctcaag ttatggattg ggcaaaaatg cgtgagattg ccgatgaagt tggggcatat
    33361 ttatttgtgg atatggctca cgttgcaggc ttaattgcgg cgggagttta tccaaatccg
    33421 cttcctcacg ctcacgtcgt gacgacaaca acccataaaa ccttagccgg ccctcgaggt
    33481 ggtttgattt tatctgcatc tggcgatgaa gaaatgtata agaaactgca atctgccgta
    33541 ttccctgctg gtcaaggtgg accattgatg cacgttattg cggcaaaagc ggtttgtttt
    33601 aaagaagctt tagagccgga atttaaggca tatcagcaac aagttgtaaa aaatgcaaaa
    33661 gcaatggttg aggtatttaa gcaacgtggt tttgatgtgg tttcaaacgg tacggaaaac
    33721 catttattcc ttgttagctt tgtaaaacaa ggtttaaccg gcaaagcggc agatgctgca
    33781 ttaggagctg cgaacattac cgtgaataaa aactcggtgc cgaacgaccc tcaaaaacca
    33841 ttcgtgactt caggtattcg tgtgggtacg ccttctgtga cccgccgtgg ttttaaagaa
    33901 gcagaggtga cagcattagc cggctggatg tgcgatgtgc tagatagcat tggtaaggat
    33961 aatcacgaac aggtgattgc agagactaaa gcgaaagttt tagacatttg taaacgttta
    34021 ccagtgtacg cataatctca actttacact ttttcaagcg gtaatatttt ttagaaatat
    34081 taccgctttt tgttttatca atcattttct ttatctgttt tctgaaaatg gattgatttt
    34141 tcttttttta cataacataa tgataataat tctcattaat ttattttttg ttatgttacc
    34201 tcgtatttcc tcttttttag ctagcctttt tatggctttt tttcttttag gctgctcggt
    34261 ttcaacgcaa tcccttaatg aacaaaacgt ggactctatc ggccaaatta ttgatctgaa
    34321 taccaatcaa acgatttcat ttactgaact actttcccgt ctatcttctc aagattacgt
    34381 tttagttggt gaggagcata ctcagttaat tcaccaccaa attgaattgt atttatttaa
    34441 tcaacttacg aagaaagcca agttacattt aattgcgttg gagatgttaa atgtggatca
    34501 gcagcctgcg attgatcgca ttcagtttaa ccgaccggtt aatttatcag ccacggattt
    34561 aagagaggca attcaatggc aaaaatggga ttggaagatg tatcaagatt tagtggtaga
    34621 gagcttaggt tcaaatagtc gtgttatagc cactaactta acagataaag aggttgaaat
    34681 tttattaaat ggggcggagc cattaaaagg ttctgtatcc acttcctctg aagttaagca
    34741 aaagatcgca caactgttgc tgtcaatgaa tcacggaatg ccttacccga tggaaaatat
    34801 ggtggcagta caacaattcc gtgatcgcag aatggcagaa aaattagtaa aaaatgcgtt
    34861 atcgactagc ttgctgattg caggtaacca ccacgttcgc aaagatcttg gcgttccgtt
    34921 gcatattgcg gaatatgacc gaacaaaaaa agtagcggtg ctaatgctta aaacagagag
    34981 agaagaaatt acttcttcac aggcagatta tctttgggtc actcaataag gagaattatg
    35041 aaatttaata taatcacacg cattttgttt ccggttttgt gtatgggagg atcgcaaact
    35101 gcattggcag aggaaaaggc gaaaaatatt gcggagcttg atactgtgac ggtttatggc
    35161 actgtggaaa accctaattt tgagaatttc agtaaagccg gctcggtgag ttctcgagca
    35221 atgaatgtga atgcaatgca aagtttagat agtattgtcc gttctgtcgc aggtggctat
    35281 acccaaattg acccggggca agggggcgtg agtgtgaata ttcgtaatat gagtggtctt
    35341 ggtcgggtaa ataccttagt tgatggcgtg ccacaaacac agcttggtac atcagcaaac
    35401 ggaggtggta agttccacac tgatggtaac gggccaatga gccaattcag cactttaatt
    35461 gatcaaaatt ttttaacccg agttgatatt gcgaaaggct acaacaatgg tgcagccgga
    35521 ttgaatgctt tagccggtag tgctaatttt aaaacgattg atgtcgaaga tattctacta
    35581 gaacaacata aagtcggcgt attaagccgt tttaattatg gcaataatga tctgggaaaa
    35641 aacggaatgc ttgcactagc cggaaaagtt gatgtgctgg aaagtggttc tcttggcagt
    35701 ttattggctt ttagcaaaag tagtatcagt caaaattatc gccgaggtaa tggcacaatg
    35761 gcaacggatt ctgcttatat gcaagggtta aaaaatcacc ctgaatctta tatgggaaaa
    35821 attgccttta agccaaatca agattcagag tttaaattgt ccggacgtca atataaaaat
    35881 agcttagtgg ggcgtaatat tgatagtgtg acctattcct tagaatccag ttaccagcct
    35941 caatctgatt ggattgatct gaaattccta acagcagtaa cagaaactaa gcaagatttc
    36001 cacgatgatg caaaactatg gacattagaa gatgcctcaa ccaaaaacaa aatgtggatg
    36061 tttgatttga ataacaccag ccgttttgag tcagggaaat aaatattccc gtgatttacc
    36121 ggaaagtaag aataatgatg gagcgattag caatgccgct tttgggccgg caggtaagca
    36181 aaatattgat tccctttacc tagacaccga atggaaatac ggcattgtca ctttaaattc
    36241 aagtcttcac tattcacgct atcagttaaa aggatataag ccagaatgcg atagcgatga
    36301 tatggattat tgtttccctt cttttgggtt tgatgttaat aaaaaacatt ataagttgaa
    36361 tccttctgcc actttagcat ttcaggttgc tgattggttt caaccttttg tcagttacaa
    36421 acaaacctcc cgttcgccta atgtgcaaga aatgtttaat accagtcgaa atggcttgag
    36481 tgtgaacccg tttttgaaac cagaaagtgc gaaaacctat gagattgggt ttaatattca
    36541 tcaagataat gtattactca ataatgatat cttggggcta aaagcggtat attttaactc
    36601 acgcattaaa gactatttgt ataacctctc gttgtatggt tgtgggccaa cagtatgtcg
    36661 aaattcaagt gatgctacca atgctataca gttccaaatt tatgtgaatc accctgaaaa
    36721 ggttaaaaat cgaggttggg aagttgagct ggcttacgat tccgatgctt tttttgtcaa
    36781 tggtagttat acccgaactg aaagcacagc acccacttca aaaggtgcga ctattcttta
    36841 tggatttggc actgaagctt atacccagct accaaaagat tatgcgactt tggagctagg
    36901 ggctaaattg ctggataaaa aattaacact gtctagcatt tttaaatata caggcaaagc
    36961 gaaacgtgtc ggtattgatt tagacgaaga tggcaacatt attcacgagc agttaccgaa
    37021 tattccggtg attatcgatt tatatgcaaa ttacaaagtg aataaacatt taaccttaaa
    37081 agccggggta caaaatgtga tgaaccgaaa ttatcttgat gccttaaatg cgtataactc
    37141 ttccaccgca gaagagtatg actatgatac agacacctat cgtttcacaa atagtgccag
    37201 aggtcgaact tacacactag gggcagaggt gcgtttctag cttgaaagtg gcttatttta
    37261 accaatacgc cctttttctt tcctgtactg atgttgagat tcaaggcata atatccagaa
    37321 cgatgaatat tcagccggtg tgtaatatga aaaaatttgt ggttttaatt tcagggaatg
    37381 gttctaacct acaagcaatg attgatgcgc aaaaatctgc ggatacaagc ggtcaaattt
    37441 gcggtgtaat ttgcaataag gcagatgcct atgggctgat tcgagctaaa caggcgggaa
    37501 tcccgacatt tgtattttct cgtaaagatt accaaagcaa tgtggaaatg gatcttgcga
    37561 ttgccgaaca aattgagcag ttaggagctg agttaattgt attagccggc tatatgaaaa
    37621 ttttaacgcc tgaatttacg caacattttg ctggcaaaat actcaatatt cacccttcct
    37681 tattacctaa atacccaggg ctaaacactt atcaaagagc gatagaggct ggggaaagtg
    37741 aacacggcac gactattcat ttcgtgaatg aagaagtgga tgctggtgcg gtggtattac
    37801 aagctaaagt gccgatttat cctgaagatg agattgaaga tgtaatggct cgagtggttg
    37861 agcaagaaca tcgatattat ccgttggtga ttgagtggtt ctgttcgggt agattagttt
    37921 ctcagcacgg caaagcgtat ttagacggta aactactgcc tgcttgtgga tatgcagaag
    37981 attaaacgat agggtgcatc gcaccctaac tttcagctaa tgcagggcaa agataatatt
    38041 gcccgctgtg agggcaatag cgacagccca ttttcatttc atacagctca tctaataaac
    38101 aactttctgc aatggcttta gcggacattt cagcaaattt ttctccattt tttagcatta
    38161 agatatgatc ggcttgattt attgccaatg caggatcgtg caaaatcgca atgatagtta
    38221 agccttgttg tttcagcttt tgtagtaagg aaaaaagctg atattggtga tgaatatcca
    38281 aatggttggt gggttcatca agcaaaagcc agcttccgct taaatcggca ttcggttcag
    38341 gaacgagttg agccagcact cgagcaatat gcgctcgatg ttgttctcca ccggaaagtt
    38401 gtatgctact tctttctttt aatgcggtta aagacattgt ttccatagcc caagcggtta
    38461 ttttttcatt aaattttgca aattcacttt ggcgatatgg ctctcttccg agttgtacca
    38521 attcttctac ttttaaggga aaggcaattt ggctctgttg gctgagcatt gcccgttttt
    38581 gagccagagc atatccgttt aagtctgtta agcgttgatg ttgataaaat acggcactgt
    38641 tagtttgtgc attattaccg cttaaggctt tgagcaaggt tgttttgccg gctccgtttg
    38701 gaccgatgat ggcggtaaat tttccttgtt caaaggcaat ttcttgaatc tccagcaact
    38761 ttttttgttg atgaacgatg cttaaatttt ggcaagttaa taaattgctc attagatatg
    38821 tttcccactt ttccatacca ttactgcaag gaatggcgca ccaaataagg cggtaaaaat
    38881 accaatcggg atttctgccg gggcggctag ggttctggca agagtatctg caatcattaa
    38941 taagattgca ccgcaaacca aactattgag taataaatgg cggtggttac tgcctcccag
    39001 taaacgcatt aaatgtggaa taaccagccc gacaaagccg atagccccaa cacaggcaac
    39061 gcttgtgccg gttaataagg caacgtaaaa cacaagacga cgtttgactt ttgcaatgtc
    39121 aaaaccaatg tattgtgcat cttcttcacc taatgttaag gcgtttaacg cacggtgttc
    39181 ccgccaaata agtgggctac aaatgaagac aaccgcagcc atcattgcca ccatttgcca
    39241 attcatacct gctaaagatc ccatactcca aaaggttaaa ctacgaagtt ggttatcatc
    39301 ggcaacataa atcagtatgc cggttaaagc gccactaaat gcagctagag caataccaat
    39361 taatagcata atggcgatat gtagttgccc gttacgttga gaaagtaaat agagcataaa
    39421 agtcaccagc cagcccccta aaaaggcggc aataggtaga gcataatagc tgattgattc
    39481 cggcagtagt ggctgaatca ccacaatata taatgccgca gccaatgcag cacctgaaga
    39541 gacaccaata atccccggat ctactaacgg attgcgaaac agcccttgca ttgttgctcc
    39601 gctaatagcg agggctgccc cgatgaataa tgcccctagt aatcgaggca ggcggatttg
    39661 ccataaaata taggctgcac tttcgcattc agcgttgttg cagtgccaag cggatagggg
    39721 taatgacatc gcccctaaat gggtacaaat cactaagctg ataattaaag tgaaaattaa
    39781 ggttaaatgc agtttcaaag cgtatccgtt attttaaaca aggttgaata gtggtgagaa
    39841 tttggtgtgc atattgagca gtgtaaggcc caaagcccaa ggcatctaaa atattgattg
    39901 caaaaacaca gccttttttg cccgcttgtg tatttgtgag ttgggcgtat tgtgggctgg
    39961 attctgctaa tttactgatc gttgcagatt cttttgcctg attacgggag gctaataaaa
    40021 taacatcggc attgcttgca gctaaagcct cattggcgag tggcttattg ccctcagcat
    40081 tgaaactatt gtttagattt aacaaggtta agaaatgatc acccacactc tttttcccta
    40141 gcccaaagat accttgcgat gcagtgtcaa tcagcactaa gacttctttg tcagtagaat
    40201 gttggctacg aatgtcggct aatttttttt catctgccag aatggtttct gttaattgtt
    40261 ttgcctctga ttctgcacca atcgccttgg caatttgctg aatatcctca cgaatccctg
    40321 ctaagctcgg tttctctcct aagtgaagta atggaatacc gctggcttta atttgctcaa
    40381 taactgcgtt agggccggca tcaggggcta aaataatcaa atctggggtt aaagagagaa
    40441 taccttcagc agaaagctgg cgacgataac cgattttagg ttttttctcc attatcgttt
    40501 gaggtttaac tgaagtggta tccacaccga ctaacttatc agcttttcct agtgctgcga
    40561 caatttcgga agcatagccc gcagttgaaa caattttttc tgccgccttt gtggtattta
    40621 aacacattga tagggcaatg aaagaaaaa
//
LOCUS       DANMBQ010000010        36150 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.010, whole genome shotgun sequence.
ACCESSION   DANMBQ010000010 DANMBQ010000000
VERSION     DANMBQ010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 36150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36150
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.010"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(55..615)
                     /locus_tag="PXE92_000468"
     CDS             complement(55..615)
                     /locus_tag="PXE92_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759752.1"
                     /translation="MKKSFLSLLVLGTTMALAACDQAKEAAQSTTDKAVEVKEAVAEK
                     AAEVKSATEAKVEELKAAANDAAQATADKTEEAKKAVAEKATELKTTTEAKVEELKAA
                     ANDAAQATTDKTEEAKKAVAEKAAELKATTEAKVEELKAAASDATQATADKAEEAKKA
                     VAEKAAEVKVETETKVEEMKKAIESK"
     gene            complement(761..3703)
                     /gene="rne"
                     /locus_tag="PXE92_000469"
     CDS             complement(761..3703)
                     /gene="rne"
                     /locus_tag="PXE92_000469"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HDL5759753.1"
                     /translation="MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKG
                     KITRVEPSLEAAFVDYGAERHGFLPLKEISREYFPSDYVFNGRPNIKDIIQEGQEVIV
                     QVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDV
                     PEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAI
                     RDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDFINRVKLYEGEVPLFSHYQIESQIES
                     AFQREVRLPSGGSIVIDVTEALTAIDINSSRSTRGGDIEETALNTNLEAADEIARQLR
                     LRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFARISRFGLLEMSRQRLS
                     PSLSEASSHICPRCQGTGKVRDNESIALSILRLLEEEAIKENTAQVHTIVPVQIASYL
                     LNEKRKAISSIEKRHDVQIVVVPSESMETPHFSVYRLRENEITPTLSYDLTKHYEARH
                     EEEHPHHHHQEDVLVTRNEPVITVESVLQSSELNLQPSPTPTEPPKPSLLSRLIATIK
                     GWFSEEKVEEKPKPKARNQRERRQRRERPNRNAKAENQERKTPQAQTTPAEEKPMRSE
                     KKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDLRKKVRIETQEVEVENLTPAVEE
                     TVAKQVENVQKNQQIQPLATQEVPVETAPEVETTNEGRENNRQRRLPRHLRVGNQRRR
                     ENQRNQVISPMPLTSAVASPELASGKVWVQVTSTVKVEEKASFLSVDQMLEQQENQLV
                     ETEKKSEEKKLHTVSPLGGFVAQATNRDLVKEKQEQLSKPKEEKVASEDVKPVEVKEH
                     IAPFGSVVAQHSERDLVKEKNERVSKFQSQATVAPAIVEEVTNPIEVPKSTYESDYRF
                     NGRLGTFSRVEHTQAAMTIASAPSDKLEVVEISQWQNSKYYFYGKGFGGYTSAVSQVQ
                     SAPRSTNG"
     gene            complement(4160..5005)
                     /locus_tag="PXE92_000470"
     CDS             complement(4160..5005)
                     /locus_tag="PXE92_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HDL5759754.1"
                     /translation="MMSQEQFEEINQERRQALNHGSRIAMAASVLGALGIASTANAKQ
                     ASAEKSPYAEPEQYGLKRHGMTIDPKRVALVVVDPQIDFLGPKGVMWGVLGDSIKENN
                     TVANIESLFKAAKAVDMPTFVSPHYYYPTDHKWEFGSPGEHFMHDSGMFARKGQYTME
                     GFENSGADFMPEYKPYIFDGKTVITSPHKIFGPETNDLVLQLRKRKIDQVILAGMAAN
                     LCIDSHLRELIEQGFEVTVVKDATAGPRIPEGDGYLAALTNYRIIANDLWTTEEAVKK
                     MTAKA"
     gene            5132..5956
                     /locus_tag="PXE92_000471"
     CDS             5132..5956
                     /locus_tag="PXE92_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5759755.1"
                     /translation="MDSLTHLFTQFQFRTDLFHLGQLCQIGSFNEENKGYLHFVRQGR
                     FILNQAAERPITIERPAIIFSPTNILHSLHPLDDSGLDIFCINFDFGKGIRNPLTHTL
                     HNIVILELAQYPELGVLADQIFSEVNQKGCGYQAMIHHLCAYFTLKVARQCLEKGYIQ
                     TGLLKGLADKQLGKVLLAIHNAPERDWNVEELANVALMSRSRFAAYFKQTMGVSPMDY
                     LTNWRLAVAQHLLQKGIPVALVAEQVGYSHNAALSRVFMRELGLSPTEWLAQNKES"
     gene            complement(6041..7504)
                     /gene="ubiD"
                     /locus_tag="PXE92_000472"
     CDS             complement(6041..7504)
                     /gene="ubiD"
                     /locus_tag="PXE92_000472"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HDL5759756.1"
                     /translation="MKYKNLREFLDFLESQGELVRIQQEIDPYLEMTEIADRTLRKGG
                     PALLFENPKGYQMSVLCNLFGTPKRVALGMGQEDTKALRELGKLLAFLKEPEPPKGFK
                     DLIGQLPQWKQILNMPPKVLSKADCQQVVISGDEVDLYKLPIMHCWPGDVAPLVTWGL
                     TITQGPYKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEWKAENPGKPFLVSVAI
                     GADPATILAAVTPVPDTLSEYAFAGLLRGHKTEVVKSISNELEVPASSEIVLEGYIDL
                     EETALEGPYGDHTGYYNEQEYFPVFTVTHITMRKDAIYHSTYTGRPPDEPAVLGEALN
                     EVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYT
                     KFVIVCDDDVNARDWKDVIWAITTRCDPARDTTLIEHTPIDYLDFASPIAGLGSKMGI
                     DATNKWAGETTREWGTPIEKDDNVVKRIDEIWDSLGI"
     gene            7641..8615
                     /gene="znuA"
                     /locus_tag="PXE92_000473"
     CDS             7641..8615
                     /gene="znuA"
                     /locus_tag="PXE92_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HDL5759757.1"
                     /translation="MFKRTLIGLAVLGASVAQADVLTSIKPLGFIASAITEGVTETKV
                     LLPVTASPHDYSLKPSDVTQLQSAQLVVWVGDGLEGFLEKSIEKLPREKVLTLEDVDA
                     IDDIVDKASKKEDKDDDHDHKHEHKHEHKHEHKHEGHNHEGHNHDHHGHSHDEDWHIW
                     LSSEASELAAEQIAARLSEQMPEHKAKIAENLAKFKANLTAKKAEIAKQLEPVKAKGY
                     YTFHDAYGYFEREYGLNSLGSFTINPTVAPGAKTLTAIKKNIAKNKAQCLFAEPQFTP
                     KVIETLAKETKVNVGQLDPLGAKVQLSATAYPEFLQVLADEFSQCLTK"
     gene            complement(8667..8987)
                     /locus_tag="PXE92_000474"
     CDS             complement(8667..8987)
                     /locus_tag="PXE92_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnA domain-containing protein"
                     /protein_id="HDL5759758.1"
                     /translation="MIYPTCPECKSENTYHDSIQFVCPDCAYEWTGEETDQDDDVLIV
                     KDSNGNLLSDGDDVLLIKDLKLKGSSEVLKKGTKFKGIRLAQGDHNVDCGKIMLKSEF
                     LKKA"
     gene            9128..11491
                     /gene="rnr"
                     /locus_tag="PXE92_000475"
     CDS             9128..11491
                     /gene="rnr"
                     /locus_tag="PXE92_000475"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HDL5759759.1"
                     /translation="MIVDPNYQQELEKYENPVPSREFILNTIREHNAPMSRDELLSAF
                     HIDDEERMEGIRRRLRAMENDGELVFTKGKRYALPEKMDLIKGTVIGHRDGYGFLQVE
                     GHEKGATKSEDWFIPNAQMVKVMHGDFVLAQPNGTDRRGRKEVRIVRVLEARKKQIVG
                     RFFLESGIGFVVPDDSRVNQDILIPDEHRMGARMGQVVVVELQERKASFSRPVGIITE
                     ILGDNLAPGMEIEIALRNHDIPHIWPEGVEKQIRQFSSEEVPEEAKQGRVDLRDLPLI
                     TIDGEDARDFDDAVFAKKEGNGWRLWVAIADVSYYVRPKTALDLEALNRGNSVYFPNR
                     VVPMLPEVLSNGLCSLNPQVDRLCLVAEMSVSSKGELQDYQFYEAVMNSHARLTYTKV
                     WKMLEGDEALRERYAPLVPHIEELYAMFQTLMKARHKRGAIEFETIENQFIFNPQGRI
                     ERIEPLIRNDAHKLIEECMILANIAAARFVEKANEPALYRIHDKPSEEKLLSFKSFVR
                     ECGLTWDVGLDPTPKDYGVLLEQIAERADKELIQTMLLRSLKQAVYAADNIGHFGLAL
                     TEYAHFTSPIRRYPDLLLHRAIKYLIEKGKGNTRYYTDGGGYHYKLDDMDEFGDKCSA
                     TERRADEATREVADWLKCEFMQDHLGEEFDGVISSVTGFGLFVKLNELLIDGLVHIST
                     LDNDYYHYDADRQRLIGGSGIIYRLGDAVRVKVINVNLDEKKIDFELLTGNKKTGKTA
                     KKKAKATEVPVFKEPKTVKKAKKVAEKKPAKSAKKRTKTTASKSRKK"
     gene            11495..11761
                     /locus_tag="PXE92_000476"
     CDS             11495..11761
                     /locus_tag="PXE92_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759760.1"
                     /translation="MDYKKQILFSLLFALVIAIISYFLFTYIPFDCSDLSKLNDSQRL
                     ECRTAEFLGVYYWLPHTTTLFFGSVLLYWAVYGMISLVQAVLKR"
     gene            11984..12442
                     /gene="mraZ"
                     /locus_tag="PXE92_000477"
     CDS             11984..12442
                     /gene="mraZ"
                     /locus_tag="PXE92_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HDL5759761.1"
                     /translation="MFRGASSISIDSKGRIAIPTRYRAELLEKHHGILVCTVDIRQPC
                     LLLYPLHEWEMVEQKLLALSNFDPVQRRIQRVMQGFATECEMDSAGRILLSPTLRQHA
                     QLEQQIMLVGQLNKFEIWQDKQWQAQIAEDLAFGSSAEILDCEALKNLSL"
     gene            12458..13396
                     /gene="rsmH"
                     /locus_tag="PXE92_000478"
     CDS             12458..13396
                     /gene="rsmH"
                     /locus_tag="PXE92_000478"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDL5759762.1"
                     /translation="MSENPKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSK
                     LGENGRLIATDRDPRAIAEAQTISDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDL
                     GVSSPQLDEAERGFSFMRDGPLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERF
                     AKRIAQAVVSYNKSANEKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINGEL
                     DELEKALNSALTVLAPEGRLSIISFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELT
                     KNIPLKTIGKAIMPSEAEIEANARSRSAVLRIAEKR"
     gene            13415..13726
                     /gene="ftsL"
                     /locus_tag="PXE92_000479"
     CDS             13415..13726
                     /gene="ftsL"
                     /locus_tag="PXE92_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HDL5759763.1"
                     /translation="MSNERYPLHQIIIDDIFSHNKVALLLLIGVVISAVATIWITHQT
                     RLSVSEQGQLIQANQKLESQYTNLQLEENSRSSRARVDAAAKSFGLQPIKKEQEIILV
                     E"
     gene            13730..15790
                     /locus_tag="PXE92_000480"
     CDS             13730..15790
                     /locus_tag="PXE92_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsI"
                     /protein_id="HDL5759764.1"
                     /translation="MVKSVKLKRKQEAPVAKAEPQQAEGKKTPSFLPTRFRVVVFFML
                     LMVGGLLAQTAYIQLFDSERLIKEANNRSLRTKELQFTRGRILDRNGRFLSISVPMYS
                     LTLDPREYFDTKLRRSNESWRALAIEMETSKGKIEANVNKFIEKKNFSKEKVDFDPRS
                     ILNTKSEGYWTQLAQVTGLDYNSLIEKVRNNPSSVFLRLDNENLVRERQKFQALSKEI
                     GRSYNDIMDELYSKNRQRFLYLSRHQSEAISEYAKELDIDALVIKVESRRFYPLAEES
                     SQLIGFTDKDDMHGSEGLERSFDSLLIGKNGKQIIRKDAKGNIVENIRSEKQYDPQDV
                     MLSIDEELQSMVYGEIKKAVQENNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFK
                     PELMRNRAITDTFEPGSTVKPFTVLTALQNGVTYRDEVIGTRPFVVNGHTIKDVAPRD
                     SLTLTGILQKSSNIGVSKLALRMPANALVDTYTKVGFGKDTGLGLGEQRGTNGDRKRW
                     ADIERATLSYGYGLNVTPLQLARAYATLGSFGLYRPLSITKVDPPVIGERVLPEKTTR
                     DVVHMMESVAAKGEGGHRAAVDGYRVAIKTGTIHKLEKGKYVEKYIAYTAGLAPASDP
                     RFALVVLINEPKAGNYYGGFVSAPLFSRIMGYTLKQRNIKPDNLTENTQSAVREIKLE
                     RPIN"
     gene            15799..17289
                     /gene="murE"
                     /locus_tag="PXE92_000481"
     CDS             15799..17289
                     /gene="murE"
                     /locus_tag="PXE92_000481"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HDL5759765.1"
                     /translation="MKRLLPFLTELDAWVEELTELKQMTLDSRQVQAGDLFVALKGHQ
                     VDGRKFIPNAIEQGAAIILAEADEDQPEIELDPKFAKFNLDRTACCKVVSVPRLPKLL
                     SEIAGALYHNPSHKLTLAGITGTNGKTTTAQLLAQWHNLLGGKSAVMGTIGNGLYGQV
                     QEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLAQFRAEALDFDLAIFTNLSRD
                     HLDYHNTMEEYAQAKFRLFNELSTKAQVINADDEIGREWLTQLPNAVAVSTDPKFAGN
                     HQFVKATAVKFTLQGASIAFESSWGNGELHSRLIGAFNVNNLLTAFAGLLALGFDIQE
                     LVKTAPNLVGVAGRMECITAPNKPMVIVDYAHTPDALEKALQAARLHCEGELWCIFGC
                     GGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIVKGFSKPQQIIHNREE
                     AIKTAIEQAKATDVILIAGKGHEDYQIIGTEKLHFSDQETARKYLF"
     gene            17377..18771
                     /gene="murF"
                     /locus_tag="PXE92_000482"
     CDS             17377..18771
                     /gene="murF"
                     /locus_tag="PXE92_000482"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDL5759766.1"
                     /translation="MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFAL
                     KGENFDAHHYLQNAVAQGCVAVVVERECEIDVPQLVVADTRLALGELAKWLKAKLNPK
                     TVAMTGSSGKTTVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYA
                     VIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENG
                     KAIVNLAFYYPQWQKEIGSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQ
                     GEIAIDLPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC
                     LFIDDTYNANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAAL
                     DLIVSFGKESAVISQQAEHHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKME
                     TVISELCKPFNLNF"
     gene            18792..19874
                     /gene="mraY"
                     /locus_tag="PXE92_000483"
     CDS             18792..19874
                     /gene="mraY"
                     /locus_tag="PXE92_000483"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDL5759767.1"
                     /translation="MLVWLAELLVQYNTAFNVVSYITFRAIMALLTAMGIGLWIGPKV
                     IRRLQILKFGQEVRNDGPESHFKKRGTPTMGGVMILAAIGVSTLLWADLRNSYVWFTL
                     FVLFGYGAVGFVDDYRKISRKNTDGLIARWKYFWLSAIALVAVFGMYAVGKDTAATQL
                     VVPFFKDVMPQLGLFYIVLSYFVIVGTSNAVNLTDGLDGLAIVPTIMVASAFALIAWA
                     TGNFNFAQYLHIPFIPNAGELVILCTAIVGAGLGFLWYNTYPAQVFMGDVGSLSLGGA
                     LGVIAVLVRQELLLVVMGGVFVVEALSVILQVGSYKLRQKRIFRMAPIHHHFELKGWS
                     EPRVIVRFWIITLMLVLVGLVTLKLR"
     gene            19938..21239
                     /gene="murD"
                     /locus_tag="PXE92_000484"
     CDS             19938..21239
                     /gene="murD"
                     /locus_tag="PXE92_000484"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDL5759768.1"
                     /translation="MQKQYENKTVTIIGLGTTGLSCVDFFKKKNANIQVIDTRANPAG
                     ADKLDVTIPLHTGGLNSEWLLKSDLIVISPGLAVATPEIQQAIQAGVEIVGDVELFCR
                     EAKAPIIAITGSNGKSTVTTLTTEMAKQAGIKVGMGGNIGVPVLSLLEGDYDLFVLEL
                     SSFQLETTYSLKAKAATVLNISEDHMDRYDSIADYRQAKLRIYDNAENIIVNGEDAQT
                     YPIQAVKKVIRFAEQNAEYSLRNQMLYSGDDAIIQTKQMLISGRHNEMNALAAMALAE
                     AANVPREGIVKALQIYGGLPHRFQAVATNDGVRWVNDSKATNVGSTVAALNGLNIAGT
                     LYLLLGGDGKAADFSELKPLINKPNIVCYCFGQDGAALAELSEQSVLVETMQQAIEAI
                     RPQLKKGDMVLLSPACASLDQFKNFEQRGEVFMALAQGQHA"
     gene            21239..22417
                     /gene="ftsW"
                     /locus_tag="PXE92_000485"
     CDS             21239..22417
                     /gene="ftsW"
                     /locus_tag="PXE92_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HDL5759769.1"
                     /translation="MLERIKSEWDKWVRLTPSNSLYDRTLIWLFLGLLIIGFVMVTSA
                     SLPVSTRLNNDPFYFAIRDGLYIIASIIFCYVFVQIPIEKWEKHNLALFFISIGFLIA
                     VLIFGRSINGAVRWIPLGILNFQPAELAKLAVICYFASFYVRKYDEIRKEKASFWRPA
                     VILFLFGFLLILQPDLGSTFVLFVLTFSMLFIVGAKIMQFMFLGVVGTVLFAVLILTS
                     EYRLKRVTSFMDPFADAYGDGFQLSNSQMAFGQGEFWGQGLGNSVQKLEYLPEAHTDF
                     VMAVIGEEFGFFGIACIVLLLILLTVRALKISKESLVLEERFKGYMAFGIAIWVFLQG
                     FVNLGVASGLLPTKGLTFPLVSYGGSSLVIMSIAIAVLLRIDHENRAERIGHAKIKTI
                     "
     gene            22536..23591
                     /gene="murG"
                     /locus_tag="PXE92_000486"
     CDS             22536..23591
                     /gene="murG"
                     /locus_tag="PXE92_000486"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDL5759770.1"
                     /translation="MAKKLLVMAGGTGGHVFPAIAVARELQKQGWQIRWLGTKDRMEA
                     TLVPKHGIEIDFIEISGLRGKGVAALLKAPFAIFKAVMQARKIIKNYQPDAVLGMGGY
                     VSGPGGIAAKLCGVPVILHEQNAVAGLTNVWLSKIARKVLQAFPTAFKEAEVVGNPVR
                     EDLSALPLPNERFAKRGYPINILVMGGSQGARVINQTVPEVAKVLGNNVFISHQVGKG
                     NLAGIEEVYQQTGNGIASEFIDDMKAAYEWADLVICRSGALTVCEIAAVGLPAVFVPF
                     QHKDRQQFLNANYLAADGAAVIIEQSDFTPKALQQALEPLIANRQLLLDMSMRARAKS
                     TPMAAKRVAEVIIQEAN"
     gene            23667..25094
                     /gene="murC"
                     /locus_tag="PXE92_000487"
     CDS             23667..25094
                     /gene="murC"
                     /locus_tag="PXE92_000487"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDL5759771.1"
                     /translation="MKNFQDKVKKLVPEMRRVSQIHFIGIGGAGMSGIAEVLLNEGYQ
                     ISGSDIADRAVTQRLSAAGAKVFIGHQAENIAGASVVVVSTAIDETNPEIIAAREARI
                     PVIRRAEMLAEIMRFRHGIAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSTGK
                     NAHLGASRYLIAEADESDASFLHLQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLR
                     NLPFYGLAVMCADDETVMEIAPRVGRQVITYGFSENADYRIEDYQQTGFQEHYTVVCP
                     SGERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFI
                     RPNGKIMLVDDYGHHPTEVDVTIQAARSGWEGKRVVMIFQPHRYSRTRDLFDEFVQVL
                     SKVDALILLDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQD
                     GDLILAQGAGSVSRISRGLAESWKN"
     gene            25184..26095
                     /locus_tag="PXE92_000488"
     CDS             25184..26095
                     /locus_tag="PXE92_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDL5759772.1"
                     /translation="MSIKNEKIAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGID
                     TKEFPIEKLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFR
                     TKLLWNAVGLPTADMVVVQRGQAVDFDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEE
                     LAPAIHEALKFDSIVLVEEFLAGNEYSVPVLDGQVLPAVQVIPDGEFYDYHAKYVSDN
                     TQYVVPALNDERQAEVAKLVKAAYDVVGCRGWSRIDVMEDGEGKFRLVEVNTNPGMTS
                     HSIFPKSAATVGISFEKLVERVLELSA"
     gene            26095..26886
                     /locus_tag="PXE92_000489"
     CDS             26095..26886
                     /locus_tag="PXE92_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HDL5759773.1"
                     /translation="MGIFRKKNSTNVRLNVLNPKTPVSPRKWLVFIKPLIVLLCTLFV
                     FGVYSNWQNILESWDKTPIRAYALTHKTQFTTNADIRETLSKEPALKGYFGQNIQEVK
                     DKLLSIPWVKDVAVRKLYPDRLSITLLEHKPVAIWNDTNFVSEQGTVFSLPKDRIDKN
                     GLPLLYGPDTEGKSVLEAWNKIRADLNARNLDLTSVSVDNRGSWTIRLSNQVELRLGR
                     GEWTSKIDRFVIIFPEIHIPEGNRLAYVDLRYPHGAAVGFSPIKN"
     gene            26909..28180
                     /gene="ftsA"
                     /locus_tag="PXE92_000490"
     CDS             26909..28180
                     /gene="ftsA"
                     /locus_tag="PXE92_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDL5759774.1"
                     /translation="MTKAVESKIIVGLDIGTSKVVAVVGEVLPDGVINVMGAGVCPSK
                     GVDRGGVIDLDAAVNSIQRAIEQAESIADCQIMGVTLAISGQHIVGLNEAGSSTLSGG
                     IVTQDNIESAVDMAKAIKLQDGLETLHMIPQEYHVDRLPATKNPIGLSGMRLQVQAHL
                     IACHQAWLKNLKNAVEHAKLKVDQVVFSGLASSYSVLTEDEKELGVCLIDIGGGTMDV
                     LVYTDGALRYSKVIPFAGNNITDYLARVFTTSRPEAESLKVGYGSAISPPTHNSDKKI
                     EVAGLGGRMARTFTRAQVATVTSQCYNDLLKVVEEELTQLRHELFQKGIKQELIAGVV
                     ITGGGSQIEDIVECAKSIFGSQVRVGYPLNITGLTDYVNKPQYATALGLLQYSHYNYT
                     EQGTSTDSNEDIFAPIGRGTKKIIDFFKSKF"
     gene            28213..29460
                     /gene="ftsZ"
                     /locus_tag="PXE92_000491"
     CDS             28213..29460
                     /gene="ftsZ"
                     /locus_tag="PXE92_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDL5759775.1"
                     /translation="MFEPIIEQTQDAIIKVVGVGGGGGNAVDRMSRSADDIKGVEFFD
                     VNTDAQVLRKRTTRQTIQIGASTTKGLGAGADPMVGKQAAEEDREAIANALKGANMTF
                     IAVGMGGGTGTGAAPVVAQIAKEQGSLTVGVVTKPFRFEGPRRMRFADQGIKELSQYV
                     DSLIIIPNDKLRGLGKQTTAVDAFAAANDVLSNCVLGITNMITSSGGSTGADINVDFA
                     DVRTVMSGKGHAMIGTGFAEGEVGEGRAEKAMNDAISSPLLENVDISGASGMLINISA
                     GTDFLLEEVYAMMDLIYGFATEDAAIVFGCNYYPEMDGKVSVTLVATGIGQPEEALHM
                     PHKAQPVYAQQGNHVQATQPTQPNHAVQQPNFTQPSSYGQPNQFSGQPQPLQQPVAPK
                     PQSVDTAQIFNPNSIPGFMRNSQ"
     gene            29492..30412
                     /gene="lpxC"
                     /locus_tag="PXE92_000492"
     CDS             29492..30412
                     /gene="lpxC"
                     /locus_tag="PXE92_000492"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HDL5759776.1"
                     /translation="MTKQRTLKQAAKVTGIGLHSGKKVTLTLRPAPANTGVIYARTDL
                     EPVVYFPASADSIRDTQLCTCMVNDDGVRISTVEHLNAAMSALGLDNVIVEVDAPEIP
                     IMDGSSSPFIYLLLDAGIEEQDAPKKFIRIKETVRVEEGDKWAELKPYNKGFKLNFTI
                     DFEHPLIPKNVGSYSIDFSAENFIQQLSRARTFTFMKDVEYLQSIGLALGGSLDNAIV
                     LDDYRILNEDGLRFKDELVRHKMLDSIGDLYMCGYNILGEFSAYKSGHGVNNKLLRAV
                     LENKNAWEFVTFEDKAEVPQGYQVQQEIFI"
     gene            30585..32267
                     /gene="recN"
                     /locus_tag="PXE92_000493"
     CDS             30585..32267
                     /gene="recN"
                     /locus_tag="PXE92_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HDL5759777.1"
                     /translation="MLTQLTINNFAIVRHLILELNEGMSVITGETGAGKSIAIDALGL
                     CLGYRSESGMIRNGSDKADISATFTMQPHSPAYLWLQEHELLDEDNPQECILRRMINI
                     DGRSKAFVNNRSLPVSQLRELGQYLIHLNGQHAPQLLLKNEYQLEIVDHYATLQPLLM
                     KMAKQYGNWKELNKQVKNFQKQCQENEARKQLLEYQVEELDEFAIKANEFEEMEEKYN
                     ILSSSEELTELSDEITRLLSDDEINANSLIYKALRNAENLAEVDSQYQGILDMLNEAL
                     IQIQEASSEVAQLASKIEQDPELLQELDNRIAQTISLARKHHIQPNELWQYHATLKAE
                     LQELLDFEDNEEQLIQNEKQAYQECITLAEEIYQKRLDATHKLSEQVTKQIKHLAMEN
                     GEFFIHIEHNLEKMSANGADYVEFNLRSNLGQQPQPLAKIASGGELSRISLAVQVLTA
                     NKLSTPTIIFDEVDVGISGSAATTVGKLLRKLGEKCQVLCVTHLPQVASYGNQQFNVQ
                     KYVENNQTETQMTLLTEAERIHALARLLGGSEITETVLANAKEMLNLAKNNE"
     gene            complement(32314..32389)
                     /locus_tag="PXE92_000494"
     tRNA            complement(32314..32389)
                     /locus_tag="PXE92_000494"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(32354..32356),aa:Ala,seq:ggc)
     gene            complement(32469..33908)
                     /gene="gltX"
                     /locus_tag="PXE92_000495"
     CDS             complement(32469..33908)
                     /gene="gltX"
                     /locus_tag="PXE92_000495"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDL5759778.1"
                     /translation="MKIETLFPLDPNVKVRTRFAPSPTGYLHVGGARTALYSWLYAKH
                     NDGEFVLRIEDTDLERSTPEATAAILEGMEWLDLAWEHGPYFQTKRFDRYNQVIDQML
                     EAGTAYRCYCSKERLDEVRAEQEANKEKAKYDQHCLHNPQNDPSQPHVVRFKNPTEGS
                     VVFDDAVRGRIEIANSELDDLIIRRTDGSPTYNFCVVVDDWDMGITHVVRGEDHINNT
                     PRQINILKALGAPIPTYAHVSMINGDDGQKLSKRHGAVSVMQYRDDGYLPEALINYLV
                     RLGWGHGDQEIFSRDEMIELFDIHSVSKSASAFNTEKLQWLNQHYIRSLAPSYVAKHL
                     EWHMQTQGIDFTSGPKLEEIIPVLGERCKTLKELAESSRYFYQEFKAYDEKAAAKNFK
                     AEAVAPLAKLLEKLTACNDWTVENIHEAMNQTAAELEIGMGKVGMPFRLAVTGSGQSP
                     SMDITAKLVGKERTLARLQKAIEFIQANS"
     gene            34083..34158
                     /locus_tag="PXE92_000496"
     tRNA            34083..34158
                     /locus_tag="PXE92_000496"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:34116..34118,aa:Val,seq:tac)
     gene            34211..34286
                     /locus_tag="PXE92_000497"
     tRNA            34211..34286
                     /locus_tag="PXE92_000497"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:34244..34246,aa:Val,seq:tac)
     gene            34335..34410
                     /locus_tag="PXE92_000498"
     tRNA            34335..34410
                     /locus_tag="PXE92_000498"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:34368..34370,aa:Val,seq:tac)
     gene            complement(34564..36057)
                     /gene="mltF"
                     /locus_tag="PXE92_000499"
     CDS             complement(34564..36057)
                     /gene="mltF"
                     /locus_tag="PXE92_000499"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HDL5759779.1"
                     /translation="MKGLIARLFIAVALLLWAWDMIFPWQKIIHSEANHYTQIQQSKT
                     LKVGMINHPLSYFVGPEGKSGIEYDLATAFAQYLKVNLDIKTYDSSEKLFEALRNNDV
                     DIAAAGLLYHSELNDEFQIGPSYYSASWQLVYKKGSARPYRLSDLRENVIIPAGSAVI
                     PILNQLKVDNPELKWQISDKFTQEELLLKVAQGEISHTIAMSVDISAAQHINPNLAVG
                     FDLTDENPVLWYLANSSYSELQSVLLDFMSYSMETGLISRIEEKYFNHLAKFDYVDIQ
                     SYLNAIKTILPKYEPLFRAHKGELEWQMLAAIAYQESHWDPNATSPTGVRGIMMLTKD
                     TADRMKISDRTNPAQSIKAGSEYLHMLMRQMPETIPQADRIWYSLAAYNMGLGHLLDL
                     RRLTKQLGGDPDNWLDVKKNLPLLAEKRYYANLKYGYARGYEALQYVENIRRYYGSII
                     NYQRVEEQKMQEQENLPDGQIKQENSSYEKIEEKEIPTDKEITPASN"
BASE COUNT        10553 a         7140 c         7960 g        10497 t
ORIGIN      
        1 aatccaggct ttatttttag cgtgtttcga tagctacaga gaaactaaaa agcactattt
       61 gctttcaatc gcttttttca tttcttcaac ttttgtttct gtctcaactt tcacttctgc
      121 tgccttctca gctactgcct ttttagcttc ttctgcttta tctgctgttg cttgagtcgc
      181 atcacttgct gctgctttta gttcttccac tttagcttca gttgtggctt ttaactcagc
      241 agctttctct gctactgcct tttttgcctc ttctgtttta tctgttgttg cttgagctgc
      301 atcatttgct gctgctttta gttcttccac tttagcttca gttgtggttt ttaactcagt
      361 ggctttctct gccactgcct tttttgcctc ttctgtttta tctgctgttg cttgagctgc
      421 atcatttgct gccgctttca actcttcaac cttcgcttca gtagccgatt taacttctgc
      481 agctttttca gctacagctt cttttacttc aaccgctttg tctgtagttg attgcgcggc
      541 ttcttttgcc tgatcacaag cagcaagtgc catagttgta cctaacacta ataatgataa
      601 aaatgatttt ttcataccga gttccttaaa taaactaaaa ataacgcact ttgtaataaa
      661 gtgcgtttac ttaggcagaa aaattgatag aaagttcata ctttgataaa aaaatgccta
      721 ttagttataa ctaataggca tttaaaccaa ttaattgtac ttaaccattg gttgaacgag
      781 gcgctgactg cacttggctc actgcgctgg tatatccgcc aaaccctttg ccatagaaat
      841 agtatttaga gttttgccat tggctaattt cgactacttc aagcttgtca cttggtgcag
      901 aagcaatggt catagcggct tgggtatgct caacacgaga gaatgtacct aatctgccgt
      961 taaatcgata atcgctttcg taagttgatt ttggcacttc aatcgggtta gtaacctctt
     1021 ccacaatcgc tggtgcaacc gttgcttgcg attggaattt actgactcgc tcatttttct
     1081 ctttaactaa atcacgttca gaatgctgag caacaacact accaaatgga gcaatatgct
     1141 cttttacctc tactggtttt acgtcttcag aagcaacttt ttcttctttc ggtttggaaa
     1201 gctgttcttg cttctcctta accaaatcac ggttagttgc ttgtgctaca aagccaccta
     1261 gcggactaac tgtatgaagc ttcttctctt ctgatttttt ctctgtctca acaagctgat
     1321 tttcttgctg ttcaagcatt tgatcaacag ataagaatga tgctttttcc tctactttga
     1381 cagtagaggt aacctgaacc caaactttac cgctcgcaag ctcaggcgaa gcaacagctg
     1441 aagttagagg cataggagaa ataacctgat tgcgttgatt ttcacgacga cgctgattgc
     1501 ccacacgcaa atggcgaggt aaacggcgtt ggcggttatt ttcacgtcct tcgttcgttg
     1561 tttctacctc aggagctgtt tcaacaggta cttcttgggt tgcaagcggt tgaatttgtt
     1621 gatttttttg cacattttca acttgttttg ccaccgtttc ctcaacagca ggtgttagat
     1681 tttccacttc tacttcttgt gtttcgatac gcactttttt acgtagatca cggcgttggc
     1741 gacgttcagt ttgaacctca cgggagttgc tacgactctc ttgctcggtt acaccggaaa
     1801 cttcttccac taccgctcgg cgtgcttttt tctcgctacg catcggtttt tcttccgctg
     1861 gagtagtttg agcttgcgga gttttacgct cttgattttc cgctttagca ttacggttcg
     1921 ggcgttcacg gcgttggcga cgctcacgct gattgcgtgc tttcggcttc ggtttttctt
     1981 ccactttttc ttcactaaac cagcctttaa tggtcgcaat taagcggctt aacagcgatg
     2041 gttttggtgg ttcggttggt gttggcgaag gttggagatt cagctccgag ctttgtaaca
     2101 ctgactctac cgtaatcacc ggctcgttac gggtaaccag cacatcttct tgatggtgat
     2161 gatgtgggtg ttcttcttca tgacgagctt cgtaatgctt ggttaaatcg tagcttaacg
     2221 ttggagtaat ttcattttca cgcaggcgat atacgctgaa atgcggcgtt tccatacttt
     2281 cagacggtac tacaacaatt tgtacatcgt ggcgtttttc aatgctggaa atcgctttac
     2341 gtttttcgtt gagtaagtag ctggcgattt gcaccggcac aatggtgtga acctgtgcag
     2401 tgttttcttt gattgcctct tcttctaata aacgtaagat tgacagtgcg attgattcat
     2461 tatcacgtac tttaccagtt ccctgacagc gagggcagat atgcgatgaa gcctcactta
     2521 atgatgggct taaacgctga cggctcattt ctaacaaacc gaaacgggaa atacgggcaa
     2581 attggattct cgcacggtct tggcgtgtcg cctcacgaat acggttttct acttcacgtt
     2641 ggtggcgaac cggtgtcata tcgataaagt cgatcacaat caaaccacct aagtcacgca
     2701 aacgtaactg acgggcaatt tcatctgccg cttctaagtt ggtgttaaga gcggtttctt
     2761 caatatcgcc gccacgggtt gaacgtgagg agttaatatc aattgctgtt aaggcttctg
     2821 ttacatcaat aacgatagag ccaccggaag gtaaacgcac ttcacgttgg aatgccgatt
     2881 cgatttgcga ttcaatttga tagtggctga atagtggtac ttcgccttcg tataatttca
     2941 cacggttgat gaaatccggg cgaacaaggc gaatgtggtt tttggctttc tcgaacactt
     3001 ttttgttgtc gattaagatt tcgccaatat cacggcgtag atagtcacga attgcacgca
     3061 caatcacgtc actttcttgg tgaattaaga acggagctgg gcgagattcc gccgcttttt
     3121 taatcgcttc ccagtggtgt aacaagactt ttaagtccca ttgtaactct tccggcgatt
     3181 tgccgacacc ggcggtacga acgattaagc ccacgtcttc cggtacatct aagcagtcta
     3241 aagcctcttt gagttctaaa cgctcatcac cttcaatacg gcgggaaata ccaccggcac
     3301 gagggttgtt cggcattaag actaagtaac tgcccgcaag cgaaataaag gtggttaagg
     3361 ctgctccttt gttaccacgc tcttctttgc tgacttgaac aatcacttct tgcccttctt
     3421 gaataatatc tttgatattc gggcgaccgt taaacacata gtctgacggg aagtattctc
     3481 gggaaatttc ttttaaaggt aggaagccgt ggcgttctgc accgtaatct acgaatgcag
     3541 cttcaaggct tggttcgaca cgggtaattt tacccttgta gatattggat tttttctgtt
     3601 cgtgacccgg gctttcaatg tccaagtcaa ataagcgttg cccatcaacg agggcaacac
     3661 gcaactcttc tttttgagtt gcattgatta acattctttt cattgtgttt tctcattatt
     3721 ttgtttttgt cttacacggt cattttgacc cattaataag ggaatggatt taatgtctat
     3781 ctcacgactg tcttcattcc cgatagtgca ttgatggttg tcttacgttt actttgtctt
     3841 gtcttaaaga aactgcaaaa tcaatcactt aaggcttgtt tatctctatt acaagcggtt
     3901 atttttgctt tattttttgc aattttctat tgctttttca agccaaaaat aacgagtcat
     3961 tatcgcattt taaccctgaa aaaggcaagg taattgttgt atggtagctg ttatttgttg
     4021 tggagatgaa tataatgaaa atgaatgggg tgataaggaa aaataatgag atttagtgtg
     4081 agtgctggag ataagcgtga aatccaagcg gttaaatttg caaaaaaaga gctaaattta
     4141 accgcttgta aagcgaatat tatgcttttg ccgtcatttt tttcactgct tcttcagtgg
     4201 tccagaggtc atttgcgata atacggtagt tggttaatgc tgcaaggtag ccgtcacctt
     4261 caggaatacg aggccctgcg gttgcatctt tcaccactgt tacttcaaaa ccttgttcga
     4321 ttaattcacg caagtgtgaa tcaatacata agttggcagc cataccggct aaaattactt
     4381 ggtcgatttt acgtttgcgt aattgcaaca ctaagtcatt ggtttccggt ccaaagattt
     4441 tgtgtggaga ggtaatcact gttttgccat caaaaatgta tggtttgtac tcaggcataa
     4501 agtctgcacc tgaattttca aagccttcca tggtgtattg accttttctc gcaaacattc
     4561 cgctgtcgtg cataaagtgt tcacccggtg aaccaaattc ccatttgtga tcagtcgggt
     4621 aatagtagtg tggcgaaaca aaggttggca tatcgactgc ttttgctgct ttaaataagc
     4681 tttcaatgtt agctacagtg ttgttttctt taattgagtc acctaacacg ccccacatca
     4741 cgcctttcgg gcctaggaag tcaatttgtg gatcaactac cactaatgcc acacgttttg
     4801 gatcaatggt cattccatgg cgttttaaac cgtattgttc cggctcggca taaggtgatt
     4861 tttctgcact ggcttgtttt gcatttgctg ttgatgcaat acctaatgca cctaatacac
     4921 tggctgccat tgcaatacga gagccgtggt taagggcttg acggcgttct tggttgattt
     4981 cttcaaattg ttcctgtgac atcattttat cctcattaat agatatacaa attgtaatga
     5041 taacttgcgt taccgaacgg gttgctatta tagtgatcgc atttctcctg ttttaaccgt
     5101 tcgtctcaat tctttaccca aggagcttaa tgtggatagt ttgactcatc tttttaccca
     5161 atttcagttt cgcacggatt tatttcatct aggtcagtta tgccaaatcg ggagttttaa
     5221 tgaagagaat aaaggctatt tacatttcgt tcgtcaggga cgttttattt taaatcaggc
     5281 tgccgaacgc ccgattacga ttgaacgccc agcgattatt ttttcaccaa ccaatatttt
     5341 gcatagtttg cacccgttag atgatagtgg gttagatata ttttgtatta attttgattt
     5401 tggcaaaggg attcgcaacc cattaactca taccttgcac aatattgtga tcttagagtt
     5461 ggcacagtat ccggaattgg gggtattagc cgatcaaatt tttagtgaag tgaatcagaa
     5521 agggtgtggt tatcaggcaa tgattcatca tttatgtgcc tattttacct tgaaagttgc
     5581 ccgccaatgt ttggaaaaag ggtatattca aacaggtttg ttaaaaggct tggcagataa
     5641 gcaactgggg aaagtgctgt tagctattca caatgcacca gagcgagatt ggaatgtaga
     5701 ggagttggca aatgtggcat taatgtctcg ctcacgcttt gctgcttatt ttaaacaaac
     5761 gatgggggtt tcaccgatgg attatctcac taactggcga ctagcggttg cccagcattt
     5821 attacaaaaa gggataccag tagcattggt ggcagagcaa gtcggttata gccataatgc
     5881 tgctctcagc cgtgtcttta tgcgggaatt agggctttcg cctaccgagt ggctggctca
     5941 aaataaagag tcgtaacctg atgagaaaca aatagccgaa tggtaaaaat gtcaaaaaat
     6001 ttaaccgctt gttatgttgc acaagcggtt aaatgttgcc ttaaatgcca agagaatccc
     6061 aaatctcatc aatgcgtttc accacattgt catctttttc gatgggtgtt ccccattctc
     6121 gggtggtttc acccgcccat ttattggtgg catcaatccc catttttgag cctaaccctg
     6181 caattggcga ggcaaaatcg agataatcta tcggcgtgtg ttcaatcagt gtcgtatctc
     6241 gagccgggtc acaacgggtg gtgatcgccc aaattacatc tttccaatct cgagcgttca
     6301 catcgtcatc gcacacaatc acaaacttgg tgtacataaa ttgacgcagg aacgaccaaa
     6361 ctcccatcat cacccgttta gcgtgtccgg catattgttt tttcatcgtc actaccgcta
     6421 aacggtaaga acagccttca ggtggcaagt agaaatcgac aatttccgga aactgttttt
     6481 gcaaaatcgg aataaagact tcattcaatg cttcacctaa tactgccggt tcatcaggtg
     6541 gtctgccagt gtaggtagaa tgataaatcg catcttttcg catcgtaata tgggtaacgg
     6601 taaataccgg aaaatactct tgctcgttgt agtagccggt gtggtcgcca taagggcctt
     6661 ccaatgcggt ttcttccaga tcgatatagc cctccagcac aatttcgcta cttgccggca
     6721 cttctaactc attggaaata gatttgacca cttcggtttt atgccctcgc aacagccctg
     6781 cgaacgcata ttccgaaagc gtatccggca caggggtgac tgccgctaaa atagtggctg
     6841 gatctgcacc aatcgcaacc gacaccagaa acggtttacc cgggttttcg gctttccact
     6901 cttggaagtc taacgcaccg ccacggtggg aaagccaacg cataatcagt ttgtttttgc
     6961 cgataagttg ctgacgataa atgcctaaat tctggcgttt tttgtaaggc ccttgcgtaa
     7021 tcgtcagccc ccaagtgacc agtggagcga catcgcccgg ccaacagtgc ataatcggta
     7081 atttgtagag atcaacctca tcacccgaaa tcaccacttg ctgacaatcg gctttgctca
     7141 gtaccttagg cggcatattt aaaatttgct tccattgtgg cagttgcccg atcaaatctt
     7201 taaacccttt cggtggttca ggctctttta aaaaggcaag taacttgccc agctcacgca
     7261 gagctttggt atcttcttgc cccattccca gagctacccg tttgggcgtg ccgaataaat
     7321 tacacaacac cgacatttga tagcctttcg ggttttcaaa cagtaatgcc ggcccgcctt
     7381 tgcgtaaggt gcggtcggcg atttctgtca tttctaaata aggatcgatt tcttgctgaa
     7441 tacggactaa ttcaccctga gactcaagga aatcgagaaa ttcacggaga tttttatact
     7501 tcatagcggt catatttttc gatttttttg caagtatata gaaaaacgta aatgaaaaat
     7561 acccataaaa aatttataga aattttgttt tattttgtta gaatagctcg gttcaaatta
     7621 aatgccataa ggggaatttt atgtttaaaa gaacattaat cggtctagcc gtgttaggtg
     7681 caagtgttgc tcaagcggat gtattaacca gtattaagcc tttaggcttt attgccagtg
     7741 ccattaccga aggggtaact gaaactaaag tattattacc ggtaactgcc tctccacacg
     7801 attacagctt aaaaccttca gatgtgactc aattacaatc tgctcaatta gtggtttggg
     7861 tgggtgacgg cttggaaggc tttttagaaa aaagtattga aaaactgccg agagaaaaag
     7921 tattaaccct tgaagatgtt gatgcgattg atgatattgt cgataaagca agcaaaaaag
     7981 aagataaaga cgatgatcac gatcataaac atgaacataa gcacgaacac aagcacgagc
     8041 ataaacacga agggcataat cacgaaggac ataaccacga tcatcacgga catagccacg
     8101 atgaagattg gcatatttgg ctctcaagcg aggcaagtga gctggcagca gagcaaattg
     8161 cggcacgttt aagcgaacaa atgcctgaac acaaagcgaa aattgcggaa aatcttgcaa
     8221 aatttaaagc aaatctaacc gctaaaaaag ccgaaattgc gaaacaatta gagccggtaa
     8281 aagccaaagg ttactacaca ttccacgatg cttacggcta ttttgaaaga gaatatggtt
     8341 taaattcatt gggttcattt accattaacc caactgttgc cccgggtgca aaaacactta
     8401 cagcaatcaa gaaaaacatt gcgaaaaaca aagcacaatg tttatttgcc gagccgcaat
     8461 ttacgccgaa agtaattgaa accttagcaa aagaaactaa agtaaatgtt ggccaattag
     8521 acccactcgg tgcaaaagtt cagttaagtg cgactgctta ccctgaattt ttacaagttt
     8581 tggctgacga atttagccaa tgtttaacaa aataagttaa aaatccccca tttaaatata
     8641 aatgggggat tttgcgatta catcacttaa gcttttttta agaattctga tttcaacata
     8701 attttaccgc aatcgacatt atggtcacct tgagctaaac ggattccttt gaattttgta
     8761 ccttttttca gtacttcaga cgagcctttt aattttaaat ctttgattaa taatacatcg
     8821 tccccgtcag ataataaatt gccattactg tcttttacaa ttagcacatc atcatcttga
     8881 tccgtttctt cgcccgtcca ttcatacgca caatccgggc aaacaaattg aattgagtcg
     8941 tggtaagtat tttcgctttt acattcaggg caggttgggt aaatcatttt aattcctcaa
     9001 attaataaag aaccagatta tataccgaaa tccagcaaaa cgctaagcgg tcatattttg
     9061 ccgatttttt accaatcgag ctaaaagtca gttagaatag ccttaattac acaaaaagga
     9121 ggatactatg atagtcgatc cgaattatca gcaagaatta gaaaaatacg aaaatccggt
     9181 accaagccga gagtttattt taaatacaat tcgtgaacat aacgccccaa tgagccgtga
     9241 tgaattattg tcggcttttc atattgacga tgaagaacga atggaaggca ttcgccgccg
     9301 tctgcgtgca atggaaaatg acggtgaatt ggtgttcacc aaaggcaaac gctatgcgtt
     9361 gccggaaaaa atggatttaa tcaaaggtac agttatcggc catcgtgacg gttacggttt
     9421 tttgcaagtg gaaggacacg aaaaaggggc gactaaaagc gaagattggt ttattcccaa
     9481 cgcccaaatg gtaaaggtaa tgcacggtga ctttgtgctg gcacaaccaa acggcacaga
     9541 ccgcagaggt cggaaagaag tccgcattgt gcgagtgttg gaggcccgta agaaacagat
     9601 tgtcgggcgt tttttccttg aaagcggtat cggttttgtt gtgcctgatg acagccgcgt
     9661 taaccaagat attctcattc cggatgaaca ccgtatgggg gcgagaatgg ggcaagttgt
     9721 ggtggtggaa ttacaggaaa gaaaagcgag ttttagccgc ccggtgggaa tcattactga
     9781 aattctaggc gataatttag cgccgggaat ggaaattgaa attgccctac gcaatcacga
     9841 tattccgcac atttggccgg aaggggtaga aaaacaaatc cgccaattta gtagcgaaga
     9901 agtgccggaa gaagccaagc aagggcgggt ggatttgcga gatctgccac tgattaccat
     9961 tgacggcgaa gatgcccgag atttcgatga tgctgtattt gccaaaaaag agggcaacgg
    10021 ctggcggtta tgggtggcga ttgccgatgt aagttattat gttcgcccaa aaaccgcatt
    10081 agatttggaa gccctaaatc gtggtaactc ggtctatttc ccgaatcggg ttgtgccaat
    10141 gttgccggaa gtgctttcca atggcttgtg ttcactcaat ccacaggttg acaggctctg
    10201 cttggtggcg gaaatgtcgg tttccagcaa aggggaatta caagattatc aattctacga
    10261 agcggtaatg aactctcacg cccgtttaac ttacactaaa gtgtggaaaa tgttggaagg
    10321 tgatgaagcc ttgcgtgaac gctatgctcc attagtgccg catattgaag aactctatgc
    10381 aatgttccaa accttaatga aagctcgcca taaacgaggg gcgattgaat ttgaaaccat
    10441 tgaaaatcaa tttattttca atccgcaagg gcgaattgag cgaattgagc cgttaatccg
    10501 caacgatgct cataaattga ttgaagaatg tatgatttta gccaatattg ctgccgctcg
    10561 ttttgtggaa aaagcgaacg aaccggcgtt atatcggatt cacgataagc cgagtgaaga
    10621 aaaattgctc agttttaaat cctttgtgcg tgagtgtggc ttaacctggg acgtaggctt
    10681 agatccaacc ccaaaagatt acggtgtact actggagcaa attgccgaac gtgccgataa
    10741 agagttgatt caaacgatgt tgctccgctc gctgaaacaa gcagtgtatg cggcggataa
    10801 tatcgggcat ttcggcttgg cattaaccga atatgctcat tttacctcgc cgattcgccg
    10861 ttacccggat ttactgttac accgtgcaat taaatatctg atcgaaaaag gcaaaggcaa
    10921 cactcgctac tataccgatg gcggtggtta tcactacaag ttagatgata tggacgaatt
    10981 cggcgataaa tgttctgcca ccgaacgccg agctgatgag gcaacccgag aagtggcaga
    11041 ttggctgaaa tgcgaattta tgcaagatca tcttggcgaa gagtttgatg gcgtgatttc
    11101 gagtgttacc ggctttggct tatttgtaaa actcaatgag cttttaattg acggattggt
    11161 tcatatttca acgctggata atgattatta ccactatgat gcggaccgac aacgtttaat
    11221 cggtggcagt gggatcatct atcgtttagg cgatgcagtt agagtaaaag taatcaatgt
    11281 gaatttagac gagaaaaaaa ttgattttga gttactcacc ggtaataaga aaaccggcaa
    11341 aaccgccaag aaaaaagcaa aagcgacaga ggttcctgtt ttcaaagagc ctaaaacggt
    11401 aaaaaaagcc aaaaaagtcg ctgagaaaaa accggcaaaa tctgcaaaaa aacggacaaa
    11461 aacgaccgct agtaaatcaa ggaaaaaata gcaaatggat tacaaaaaac aaattttatt
    11521 cagcctttta tttgctttag taattgcaat aataagctat tttttgttta cctatatccc
    11581 gtttgattgt agcgatctga gcaaactcaa cgattcacaa cgtttagagt gccgaactgc
    11641 cgaatttctg ggcgtttatt actggctgcc gcacactacc acgctgtttt tcggctcggt
    11701 gttattatat tgggcggttt atggcatgat ttcattagtg caagcagtgc tcaaacgcta
    11761 acaagcagtt ttgtttttgc aaaaagttgc aaatctcatc tgaataatcc ttccaagatc
    11821 aaaggtctat caaaaaagat agacctttat tgtgtaaata aactaaaact ccttgataga
    11881 tgtatcacat atctataaaa ttccagcaat taagtgggaa aaagtggtaa attgtggaac
    11941 ttttccttaa atttaacctc atttaaaaag gtaaatcagt aaaatgtttc gtggtgcaag
    12001 ttcaatcagc attgatagca aagggcggat cgctattccg acccgttatc gtgccgagct
    12061 attggaaaaa catcacggga tcttagtttg cactgtggat atccgccagc cttgtttgtt
    12121 gctttaccca cttcacgaat gggaaatggt tgaacagaaa ttgttggcac tatctaattt
    12181 tgaccctgtt caacgccgta ttcagcgagt aatgcaaggc tttgctaccg aatgtgaaat
    12241 ggattcggca gggcgaatac tgcttagccc tacacttcgc caacacgcac aattagagca
    12301 acaaattatg ctggttggac aattaaacaa atttgaaatt tggcaagata aacaatggca
    12361 agcacaaatt gccgaagatc ttgcttttgg cagttcggca gaaattttag actgcgaagc
    12421 attgaaaaac ctgtctctct agtaattgga aattgagatg agcgagaacc caaaacatat
    12481 tacagtatta ttgcacgaag cggttgacgg cttggcaatt aagcctaacg gtatctatat
    12541 tgacggtact ttcgggcgtg gcgggcattc tcgcttgatt ttatccaaac tgggcgaaaa
    12601 tgggcgatta atcgcaactg atcgtgaccc acgagcgata gccgaagctc aaacgattag
    12661 tgaccctcgt tttcaaattg aacatacggc attttctgcc attcccgaac tgtgtgaacg
    12721 aatggggttg gtgggcaaaa ttgacggtat tttattggat ttaggtgtgt cttccccgca
    12781 gcttgacgaa gccgaacgag gctttagttt tatgcgtgac gggccgcttg atatgcgaat
    12841 ggataccacc aaaggcttat cggcagccga gtggcttgcc caagtttcgg cagaagattt
    12901 agcttgggta ttgaaagaat ttggcgaaga gcgttttgcc aaacggattg cacaagcggt
    12961 cgtttcttac aataaatctg caaatgaaaa aatcagccgc actttgcagc ttgcgcaaat
    13021 tattgcggat gcggtgccgt ttaaagataa gcacaaacac cctgcaaccc gttcgttcca
    13081 agcaattcgc atttttatca atggtgaatt agacgagctg gaaaaagctt taaattccgc
    13141 attaacggtg ttagcccctg aagggcgttt gtcgattatc agctttcatt ctctagaaga
    13201 ccgaatggtg aaacagtttg tgcgtaagca tagtaaagga atggacgtac cccgtggttt
    13261 accgatttta gaagcagagc taaccaaaaa tattccgctg aaaaccattg gcaaagcgat
    13321 tatgccgagc gaagccgaaa ttgaagcaaa tgcccgctca cgcagtgcgg tattgcggat
    13381 tgccgaaaaa cgctaacagt aaatagggaa gaatatgtcg aacgaacgtt atccgttaca
    13441 tcaaatcatc attgatgata tctttagcca taacaaagtg gctcttttat tgttgattgg
    13501 tgtagtgatt tcagcagtgg ctacgatttg gataacccac cagactcgtt tatcggtgag
    13561 cgaacaaggg caactgattc aagcaaacca aaagttggaa agccaatata ctaatctgca
    13621 attagaagaa aacagcagaa gcagtcgggc aagagttgat gccgccgcta aatcgttcgg
    13681 attacagccg attaaaaaag agcaagaaat tattttagtt gaataaaaaa tggttaaatc
    13741 agttaaatta aaacgtaagc aagaagcccc tgtcgcaaaa gcagagcctc aacaagcaga
    13801 aggtaaaaaa acaccgagtt ttttacctac tcgctttaga gtggttgtgt tttttatgct
    13861 attaatggtt ggtggcttac tagcacaaac cgcctatatt cagctttttg actctgaaag
    13921 attaattaaa gaggctaata accgctcact tcgtactaaa gaactccaat ttacccgtgg
    13981 acgtatttta gatcgtaacg ggcgttttct ctctattagt gtgccaatgt actcattaac
    14041 acttgacccg agagaatact ttgatactaa gctgcgtcgt tctaacgaaa gctggcgtgc
    14101 cttagcgatt gaaatggaaa catcaaaagg taaaattgag gcaaacgtta ataaatttat
    14161 tgaaaagaaa aatttttcaa aagaaaaagt agattttgat ccacgttcta ttttaaatac
    14221 taaaagtgaa ggttattgga ctcagcttgc ccaagttaca ggtttggatt acaacagttt
    14281 aatagaaaaa gtacggaata accctagctc ggttttttta cgtttagata acgaaaattt
    14341 agtaagagaa cgccagaaat tccaagcgtt aagcaaagaa atcggccgtt cctataatga
    14401 cataatggac gagctttata gcaaaaaccg ccagcgattc ctttacttat cccgtcatca
    14461 atctgaagcg atcagcgaat atgcaaaaga actagatatt gatgcattag tgattaaagt
    14521 cgaatcacgc cgtttttacc cgctggcaga agaatcttca cagttgatcg gttttactga
    14581 taaagatgat atgcacggtt cggaagggct ggagcgtagt tttgattcct tacttatcgg
    14641 caaaaacggt aaacaaatta tccgaaaaga tgccaaaggc aatattgtgg aaaatatccg
    14701 ttcggagaaa cagtacgatc cgcaagatgt tatgttaagc attgatgaag aattgcagtc
    14761 tatggtgtac ggtgaaatca aaaaagcggt acaggaaaat aatgcggaat caggcactgc
    14821 ggttttggtt gatgtgcaaa ccggcgaaat tttggcaatg gcaaatgccc cttcattcaa
    14881 cccaaacaaa cgggatagtt ttaaacctga attaatgcgt aaccgtgcta ttaccgacac
    14941 ttttgaaccg ggttcaacgg tgaaaccttt taccgtatta accgcattac aaaatggggt
    15001 aacttatcgt gatgaagtta ttggcactcg cccatttgtc gtcaatggac atacaattaa
    15061 agacgttgct ccaagggaca gccttacgct taccggcatc ttgcaaaaat ccagtaacat
    15121 cggggtcagt aaattagccc tcagaatgcc ggcaaatgcg ttagtggata cttacacgaa
    15181 agtcggtttc ggtaaagaca ccggtttagg cttgggtgaa caacgaggta cgaacggtga
    15241 tcgcaaacgt tgggcggata ttgaacgtgc taccctttcc tatggatacg gtttaaatgt
    15301 gaccccatta caacttgccc gtgcttatgc gactttagga agtttcgggc tgtatcgccc
    15361 actttcgatt accaaggtcg atccgccggt gattggcgaa cgggtgctac cggaaaaaac
    15421 cacccgagat gtcgtgcata tgatggaaag cgttgcggct aaaggcgaag gcggacaccg
    15481 tgcagcggtg gacggctacc gtgtagccat caaaaccggt acaatacaca aattagaaaa
    15541 aggtaaatat gttgaaaaat atattgctta taccgcaggg cttgccccgg caagcgatcc
    15601 tcgctttgca ttagtggtat taatcaacga acctaaagca ggcaactatt atggtggctt
    15661 tgtttctgca ccactgttct cacgcattat gggttacacc ttaaaacaac gtaatattaa
    15721 gccggataac ttaacggaaa atacccaaag tgccgtgcgt gaaattaaat tagaacgccc
    15781 tatcaattaa ggttagctat gaaacgttta ctcccttttc tgacagaact tgatgcttgg
    15841 gtggaagaac tcaccgagct aaaacaaatg acacttgata gtcgccaagt tcaagccggt
    15901 gatctctttg ttgctttaaa aggacatcaa gtcgatggca gaaaatttat tccgaatgcg
    15961 atagaacaag gagcagcaat tattttggct gaggctgatg aagatcaacc ggaaattgag
    16021 cttgatccga aatttgcaaa atttaaccta gatcgcaccg cttgttgcaa ggttgtctct
    16081 gttccacgtc tgccaaaatt gctctctgaa attgcaggag ctctttacca taacccgtca
    16141 cacaagctga ctttagccgg cattaccggc acgaacggta aaacgactac tgctcaatta
    16201 ttagcacaat ggcataattt attgggtggg aaatcggcag taatgggtac tatcggcaac
    16261 ggtttgtacg gacaagtgca agaagcggta aataccaccg gctctgccat tgaaattcag
    16321 cataatcttg cgaactttgt tgaacttgga gcggattttt gtgcgatgga agtcagctct
    16381 cacggtttgg ctcaatttag agccgaagcc ttggattttg atttagcgat ctttacgaat
    16441 ttaagccgag atcaccttga ttaccacaac acgatggaag agtatgccca agccaaattc
    16501 cgtctcttca acgaattaag caccaaagct caagtaatta acgccgatga tgaaatcggg
    16561 cgtgaatggc tgacacaatt accaaatgca gttgcggtaa gcaccgatcc gaagtttgca
    16621 ggcaaccacc aatttgtcaa agccactgcg gtaaaattta ccctacaagg ggcaagtatt
    16681 gcgtttgaat caagttgggg caatggcgag ttacatagcc gtttaatcgg ggctttcaat
    16741 gtaaataatc tgcttaccgc ctttgccgga cttttagctc ttggctttga tattcaagaa
    16801 ctggttaaaa ccgccccgaa tttagttggc gtagcaggtc gaatggaatg cattaccgct
    16861 ccaaataagc caatggtaat tgtggactat gctcacaccc ctgatgctct tgaaaaagcc
    16921 ctacaagcgg ctcgtttaca ttgcgaaggc gaactttggt gcattttcgg ctgtggtgga
    16981 gaccgtgacg ccggcaaacg cccattaatg gcgacgattg ccgagaaatt aaccgataaa
    17041 gtgattgcta cagacgacaa ccctcgcacc gaagataatc aaaagattat ggcagatatt
    17101 gtgaaaggtt ttagtaaacc ccaacaaatt atccacaatc gtgaagaggc aattaaaacc
    17161 gccattgagc aagctaaagc cacagatgtg attctaatcg caggcaaagg tcacgaagat
    17221 tatcagatta ttggcacaga gaagttacat ttttcggatc aggaaacggc aaggaaatat
    17281 ctgttttaat gtcactttct ttgcacaagc aaagaaaagt gacagtgaca aatacaaaat
    17341 gctcgtaatt aattttataa agaaaaagat aaatcaatga taaaactaac cacccaacaa
    17401 atcgctgaaa tcctaaatgc caaattgatc ggcaatggcg aaactgtggt agaaaccacc
    17461 agcaccgaca cccgacaagc ggttgaaaac ggcttatttt ttgcattaaa gggcgagaac
    17521 tttgatgctc atcactatct tcaaaatgca gtcgcacaag gttgtgtagc ggttgtggtt
    17581 gagcgtgagt gtgaaattga tgtaccacaa cttgtggtgg cagatacccg tttggcattg
    17641 ggggaattgg cgaaatggtt aaaagctaag ctgaacccga aaacggtagc gatgacaggt
    17701 tcttccggca aaacaaccgt caaagagatg acggcaaaaa ttctgcaaaa aatgaccgct
    17761 tgcgaacagg aagtgcttta tacttttggt aacttaaaca atgacttagg tgtaccgatg
    17821 accttgcttc gcttaaccga acagcataaa tatgcggtca ttgagctggg ggcaaatcat
    17881 atcggtgaaa tcgcttatac caccgctatc gctcagcctg atgcctgctt ggtgaataat
    17941 gtggctgcgg cgcatttaga ggggtttggt tcattagcag gcgtggcaca agccaagggc
    18001 gaaatttatc gtggcttgaa agaaaatggc aaagcgattg tcaatttagc tttttattat
    18061 ccgcaatggc aaaaagagat tggctcacgg gaaatgcaat ctttctctta tatcgggtca
    18121 gattcggatt cttacgcaga ttactgggcg gaagatgtag aactgcattt aagcggttca
    18181 cgctttacgc tacatacccc acagggcgaa attgctattg atctgcctta tttgggcaaa
    18241 cataacgtga gcaatgcctt agcggcaact tcgctggcga tgtctgttgg ggcaacgcta
    18301 gaagcagtta aggcagggct tgagcagcgt tcaatggtaa aagggcgttt gtatccggtg
    18361 caaattaacg accactgttt gtttattgat gacacttaca acgccaatgt ggattcaatg
    18421 aaatcggcga tttctgtttt ggaaaattat ccggcttatc gtatttttgc agtgggtgat
    18481 atggcggaat tgggtgaaga aagtagcaaa tgccaccaag aagtagcgga ttttgccaaa
    18541 aatgcagcat tagatttaat cgtgagcttt ggaaaagaaa gtgcggtaat cagccaacag
    18601 gcagaacatc attttaccga taaacagcaa atggttgatt tcctactgcc gattattttg
    18661 caaaaaatcg aacaaaaaca accgcttgta ttattggcaa aaggctctcg tagccagaaa
    18721 atggaaaccg tgatttccga attgtgtaaa ccgtttaacc taaatttcta attattttta
    18781 aggactaagc aatgttagtt tggcttgcag aactattggt tcaatataac acagcgttta
    18841 acgttgtctc ttatattact ttccgtgcca ttatggcgtt attaactgca atgggaatcg
    18901 ggctttggat cgggccgaaa gtaattcgcc gtttgcagat cttaaaattt ggtcaggaag
    18961 tgcgtaatga cggaccggaa agccatttca aaaaacgtgg tacgccaaca atgggcggag
    19021 tgatgattct cgcagcgatt ggggtgagta cattgctttg ggcagatctg cgtaattcct
    19081 atgtttggtt cacgctgttt gtgctatttg gctacggtgc agtgggcttt gttgatgatt
    19141 atcgtaagat ctctcgtaaa aataccgatg gtttgattgc ccgttggaaa tatttttggt
    19201 tatctgctat cgcattagtg gcggtgtttg gtatgtatgc ggtgggtaaa gataccgctg
    19261 caacacaatt agtcgtgccg ttttttaaag atgtgatgcc gcaactcggt ttattttata
    19321 ttgtgttatc ctatttcgtg attgtcggca ccagtaatgc ggtaaaccta acggacggct
    19381 tagacgggct tgcgattgtg ccaactatta tggtcgcatc tgcctttgcg ttaattgcgt
    19441 gggcaaccgg taactttaat tttgcacaat atttacatat tccttttatt ccaaatgccg
    19501 gtgaattggt tattttatgt actgcgattg tgggagcagg tttagggttc ttatggtata
    19561 acacctaccc tgcacaggtg tttatgggcg atgttggctc actttcgctc ggcggtgcat
    19621 taggcgtgat tgcagtatta gttcgccaag aattattatt ggtggtaatg ggcggtgtat
    19681 ttgtggttga agccctctcg gtgattttac aagtaggttc atacaaatta cgccaaaaac
    19741 gtattttccg aatggctcca attcaccacc attttgaact caaaggctgg tctgaaccac
    19801 gggttatcgt gcgtttctgg attatcacgc taatgctggt tttagtcggc ttagtaacat
    19861 tgaaattacg ttaattgatt gaataaggtg cattgagata atgtacctta tgttattttt
    19921 aaattacaga ataaattatg caaaaacaat acgaaaacaa aaccgttact attatcggct
    19981 taggtacaac agggttatct tgtgtggatt tctttaagaa aaaaaatgcc aatatccaag
    20041 tgattgacac ccgagcaaac ccagccggag cggataaatt ggacgtaact attccgttgc
    20101 ataccggtgg gttaaacagt gaatggttgc tgaaatctga tcttattgta attagcccag
    20161 gtttagccgt tgccacacct gaaattcagc aagcgattca agctggtgtt gaaatagtcg
    20221 gtgatgttga actgttttgt cgggaagcga aagctccgat tattgcgatc accggttcaa
    20281 acggcaaaag taccgtaacg actttaacta ccgaaatggc gaagcaagcg gggattaaag
    20341 tgggaatggg tggcaacatc ggtgtgccgg tattaagttt gctggagggc gattatgacc
    20401 tttttgtgct ggagctatcc agcttccagc ttgagacaac ttattcactg aaagcaaaag
    20461 ctgccactgt tttaaatatt agcgaagatc atatggatcg ctacgattcg attgccgact
    20521 atcgccaagc gaaattgcgg atttacgata atgcggaaaa tatcatcgta aacggtgaag
    20581 atgcccaaac ttacccgata caagcggtca aaaaagtgat tcgttttgca gaacaaaatg
    20641 cggaatatag cctacgcaat cagatgcttt attcaggcga tgatgcaatt atccaaacta
    20701 aacagatgct gattagcggc cgtcataatg agatgaatgc gttagcggcg atggcattag
    20761 cagaagcggc gaatgttcct cgtgaaggca ttgtgaaagc tttgcaaatt tatggtggtt
    20821 tgccacaccg tttccaagcg gtggcaacca atgatggcgt gcgttgggtc aatgattcca
    20881 aagcgaccaa tgtgggtagc acggtagcgg cattaaacgg cttgaatatt gccggtacac
    20941 tttatttact tttaggtggt gacggcaagg ctgcggattt ttccgaactc aaaccattaa
    21001 ttaataagcc aaatattgtc tgctattgtt tcgggcaaga tggagcggca ttggcagaat
    21061 taagcgaaca aagtgtgttg gttgaaacga tgcagcaagc aattgaagca atccgcccac
    21121 aactgaaaaa aggcgatatg gtactgcttt ctccggcttg tgccagttta gatcagttta
    21181 aaaactttga gcaacgtggc gaggtattta tggcattagc acaaggacag cacgcataat
    21241 gttagaaaga attaagtcgg aatgggataa atgggtcaga ttaacccctt ctaattcact
    21301 ttatgacaga actctaattt ggctattttt aggcctgcta attatcggtt ttgtgatggt
    21361 aacatctgct tcactcccag ttagcacaag gttgaataac gatccatttt attttgcgat
    21421 tcgagacggg ctgtatatta ttgcttcaat tatcttttgt tatgtttttg tacaaatccc
    21481 aattgaaaaa tgggaaaagc ataacttggc actgtttttt atttcaatcg gttttttaat
    21541 cgccgtactc attttcggcc gctcaattaa tggtgcagtg cgttggattc cgttgggtat
    21601 tctcaacttt cagccggcag aattagccaa attagcggtc atttgctatt ttgccagttt
    21661 ctatgtacgt aaatatgatg aaattcgtaa agaaaaagcc agtttctggc gaccggcagt
    21721 gattttattc ttattcggct tcttgctgat tttgcagccg gatttaggta gtacctttgt
    21781 attatttgtt ctcactttct caatgctttt cattgtgggg gcaaaaatta tgcaatttat
    21841 gtttttaggc gtggtgggaa cggtgttatt tgcggtgttg attttaacct cggaataccg
    21901 tttaaaacgt gttacctcct ttatggatcc gtttgctgat gcttatggcg acggtttcca
    21961 gctctcgaac tcacaaatgg catttggaca aggtgaattt tggggacaag gtttaggtaa
    22021 ttcggtacaa aagctagaat atttgccaga ggcacatact gactttgtaa tggcggttat
    22081 tggtgaagaa tttggtttct ttggtattgc ttgcatcgta cttttactta ttctattaac
    22141 ggtgagagcc ttaaaaatca gtaaagaatc tttggtgctg gaagagcgtt ttaaaggcta
    22201 tatggcattt gggattgcga tttgggtttt cctacaaggc ttcgtaaact taggggtggc
    22261 atcaggtttg ctgccaacga agggcttaac cttcccatta gtgagttatg gtggttcgag
    22321 tttggtaatt atgtcgattg cgattgcagt tttgctacga attgaccacg aaaaccgtgc
    22381 cgagcgaatc gggcacgcaa aaattaaaac catctagccg agcggtctgc aacgttacaa
    22441 tttgcaaaat tttacaaaaa tgagaccgct tgtattagct ggaaagcata aaaattcagt
    22501 aaaatagcac gttttagaat aaaaaagagt tgaaaatggc gaagaaatta ttagtaatgg
    22561 caggtggaac aggggggcac gttttccctg caattgccgt agctcgagag ctacaaaaac
    22621 aaggctggca aatccgctgg ctggggacga aagaccgaat ggaagccact cttgtgccga
    22681 aacacggtat tgagattgat tttattgaaa tctcaggctt gcggggtaaa ggcgttgcag
    22741 cattgttgaa agcaccgttt gctattttta aagcggtgat gcaagcccgc aaaatcatta
    22801 aaaattatca gcctgatgcg gtgttgggaa tgggcggtta tgtgtccggt ccgggcggta
    22861 ttgcggctaa attatgtggc gtgccggtga ttttacacga gcaaaacgca gttgccggcc
    22921 taaccaatgt gtggctatcc aaaattgccc gcaaggtgtt acaggctttc cctactgctt
    22981 ttaaagaggc cgaagtagta ggtaatcctg tacgtgaaga tttatctgct cttccgctgc
    23041 cgaatgaacg tttcgccaaa cgaggctacc cgattaacat tttagtaatg ggtggcagcc
    23101 aaggggcaag agtgatcaac caaaccgtgc cggaagtggc aaaagtgttg ggtaataatg
    23161 tgtttatcag ccaccaagtc ggtaaaggta atttagccgg tatcgaagaa gtctatcaac
    23221 aaaccggcaa tgggattgct tccgagttta ttgatgatat gaaagccgcg tatgagtggg
    23281 cagatttggt gatttgtcgt tccggtgcgt taacggtgtg tgaaattgcc gccgtaggtc
    23341 tgcccgctgt gtttgtgccg ttccaacata aagacaggca acaattttta aacgctaact
    23401 atttggcggc agatggagca gcagtgatta tcgaacagag cgatttcact ccaaaggcat
    23461 tacagcaagc cttagaaccc ttaattgcca atcgccaact cttattggat atgtcaatgc
    23521 gagccagagc aaaatccacc ccaatggcag caaaacgtgt agcggaagtg attattcaag
    23581 aagcgaatta acttactaca agcggtcgtt tttggtaaaa attttgcaaa atgtaaccgc
    23641 ttgcgaatag attaaaagga caataaatga aaaatttcca agataaagtc aaaaaattag
    23701 tgcctgaaat gcgtcgtgtc agccaaattc attttatcgg gattggcgga gccggtatga
    23761 gcggcattgc ggaagtgtta ttaaacgagg gataccaaat ttcaggttcg gatattgcag
    23821 acagagcggt tacacaacgt ctatccgcag ccggagcgaa agtctttatc ggacaccaag
    23881 cagaaaatat tgctggggcg agtgtggtgg tggtttctac tgcgattgat gaaaccaacc
    23941 ctgaaattat tgccgctcga gaagctcgaa ttccggtgat tcgccgagca gaaatgcttg
    24001 ccgaaattat gcgttttcgc cacggcattg cgattgcagg cacacacggt aaaaccacta
    24061 caaccgcaat gatttcaatg atctacaccg aagcaaaatt agatccgact ttcgtgaatg
    24121 gcggtttggt aaaatctacc ggcaaaaatg ctcatttggg ggcgagccgt tatttaattg
    24181 ccgaagccga tgagagtgat gcttctttct tgcacttgca gccaatggtg tcggtagtaa
    24241 ccaacattga gcctgaccat atggacacct atggtggcga ttttgagaaa atgaaagaga
    24301 cttacgtacg atttttgcgt aacttacctt tctacggctt agcggtaatg tgtgccgatg
    24361 atgaaacggt aatggaaatt gctcctcgtg tcggcagaca agtgattacc tatggcttta
    24421 gcgaaaatgc ggattaccga attgaagatt accagcaaac cggcttccaa gagcattaca
    24481 ccgtagtttg cccaagcggt gaacgaattg atgtgctgtt gaatgtgccg ggtatgcaca
    24541 atgccttaaa tgcaaccgct gcgttagcgg tggcaaaaga agaagggatt ggcaatgagg
    24601 cgattttagc tgctttagct gatttccaag gggcaggacg ccgctttgac caattaggtt
    24661 catttattcg cccgaacggc aaaattatgt tagttgatga ctacggccac cacccaactg
    24721 aagttgatgt aaccattcaa gccgctcgtt caggctggga aggtaaacgt gttgtgatga
    24781 ttttccaacc gcaccgctat tctcgtaccc gtgatttatt cgatgaattt gtacaagtac
    24841 tgtctaaagt cgatgccttg attttattgg atgtgtatgc tgccggcgaa gctccgattg
    24901 tgggggcaga cagtaaagcc ttagcccgtt caatccgtaa tttaggtaag gtcgatccga
    24961 ttttggtttc agataccgat caacttggcg aggtattaga tcaaattatt caagacggtg
    25021 atttaatttt ggcacaaggt gcgggcagtg taagccgcat ttctcgtggc ttggctgaga
    25081 gctggaaaaa ttaaatactc tctccccttg cgggagagag accgaaaaat acttcgttca
    25141 gaagtatttt tcagagagag ggtatatatt taaaggattt caaatgagta ttaaaaacga
    25201 aaaaattgcc gtcttattcg gtggcgtttc gcaagagcgt gaagtttcac tgaattctgg
    25261 tgcagcggta acagctgcat taaaaagttt aggctataac gtagaaggca ttgatactaa
    25321 agaattcccg attgaaaaat taaaagaaaa agggattcag cgtgtattta atattttaca
    25381 cggcggtatt ggcgaaaatg gcgtactgca aggtgcgtta gagcaaatgg gtattcctta
    25441 caccggttgt ggcgtaatgg catcagcagt gacgctggat aaattccgga ctaaattatt
    25501 atggaatgca gtaggtttac caacagcgga tatggtggtg gttcagcgtg gacaagcggt
    25561 cgattttgac caaattattg caaaattagg cttaccggta tttgtgaagt cttcgtgtga
    25621 aggctcaagt gtgggtgtat tcaaagtaaa aaccaaagaa gaattggcac cggcaattca
    25681 cgaggcatta aagtttgatt ccattgtgtt ggtggaagaa tttttagccg gtaatgaata
    25741 ttctgtaccg gtattagacg gacaagttct accggcggta caagtaattc cggacggcga
    25801 attttatgac taccacgcaa aatatgtgtc ggataacacc caatatgtag taccggcatt
    25861 aaatgacgaa cgccaagcag aggtcgccaa attagtgaaa gcggcttacg atgtggttgg
    25921 ctgtcgaggt tggagccgta ttgatgtgat ggaagatggc gaaggaaaat tccgcttggt
    25981 tgaagtaaat accaacccgg gaatgaccag tcacagtatt ttcccaaaat cagcagcaac
    26041 agttggtatt tcctttgaaa aattagttga acgcgtattg gagttaagtg cttaatgggc
    26101 atcttccgca agaagaacag cacaaatgtg cgtttgaatg ttcttaatcc aaaaacacct
    26161 gtttctccac gtaaatggct agtattcatt aagccattaa ttgtgttatt atgtacacta
    26221 tttgtattcg gtgtgtatag taattggcaa aatatactcg aaagttggga taaaacaccg
    26281 attcgcgctt atgcattaac acataaaaca caatttacaa caaatgcaga tattcgtgaa
    26341 actttgtcta aagaacctgc tctaaaagga tatttcggac aaaatattca agaggtcaaa
    26401 gataagcttt tatctatacc ttgggttaaa gatgtggctg ttcgtaaact ttatcccgac
    26461 cgattaagta ttactttgct agaacataaa cccgttgcaa tttggaatga tactaacttt
    26521 gtctcagaac aaggaaccgt ctttagttta ccgaaagaca gaatcgataa aaatggactt
    26581 ccattactct atggtccaga tacggaagga aaaagtgtat tagaggcatg gaataaaatc
    26641 cgagctgatc taaatgcccg caacttggat ttaacctccg tttctgtaga taatcgaggt
    26701 tcttggacaa ttaggctttc taatcaagta gaattaagat taggaagagg ggaatggact
    26761 tctaaaattg atcgttttgt aataatcttt cctgaaattc atatacctga aggtaataga
    26821 ttagcttatg ttgatttacg ttatccacat ggcgcggcgg ttggatttag tcctataaaa
    26881 aattaaactc agtgaacaca aaaacattat gacaaaagca gtagaatcaa aaattatcgt
    26941 tggtcttgac attgggacat caaaggttgt tgccgttgtt ggtgaagtat tacctgatgg
    27001 tgtaattaat gttatgggag ctggcgtttg cccttctaaa ggagtcgatc gaggtggcgt
    27061 tattgatctt gacgctgccg ttaattctat tcaaagagcc attgagcagg cggaatctat
    27121 tgccgattgt caaattatgg gtgtaacact ggcaatctca ggtcagcata ttgttggttt
    27181 aaatgaagca ggatcatcaa cattatctgg aggtattgtt acccaagata atattgaaag
    27241 tgctgtggat atggcaaagg caattaaatt acaagatggc ttagaaacat tacacatgat
    27301 tccacaagaa tatcacgtgg atagattgcc tgcgactaaa aatccaattg gcttatcggg
    27361 tatgcgttta caagttcaag cacacttaat tgcttgccat caagcttggt taaaaaactt
    27421 aaaaaatgcg gttgaacatg ctaaattaaa agtcgatcaa gttgtatttt caggtcttgc
    27481 ctctagctat tctgttttaa ctgaagatga aaaagagctg ggtgtttgct taattgatat
    27541 tggtggcggt acgatggatg tactagttta taccgatgga gcattaagat acagtaaagt
    27601 cattccattt gcaggtaata acattactga ttatttggct cgtgtattta cgacatctcg
    27661 ccctgaagct gaaagcctta aagtaggtta tggtagcgca atttcgcctc caacccataa
    27721 ttcagataaa aaaattgagg tggcaggact aggtggacgg atggcaagaa cctttacccg
    27781 agctcaggtg gcaacggtta cctcacaatg ttataacgat ttgctaaaag ttgttgaaga
    27841 ggaattaacc caattacgcc atgaactttt ccaaaaagga ataaaacaag agttaattgc
    27901 cggtgtagtc attactggtg gtggctcaca aattgaagat attgtagaat gtgctaaatc
    27961 aatttttggt tcacaagttc gtgttggata tccactcaat attactggct taaccgatta
    28021 tgtgaataaa ccacaatatg caacagcatt agggctttta caatatagcc actataatta
    28081 tactgaacaa ggtacaagta cagattctaa tgaagatatc tttgctccta ttggtcgtgg
    28141 aaccaagaaa atcattgact tcttcaaatc aaaattttaa tagtgttaaa ataaacacgc
    28201 agggagataa aaatgtttga acctattatt gaacaaacgc aagatgctat cattaaggta
    28261 gtgggtgttg gtggcggtgg cggtaatgcc gtagacagaa tgtctcgctc tgccgatgat
    28321 attaaaggtg ttgaattctt tgatgtaaat actgatgctc aagttttaag aaaaagaacc
    28381 acacgccaaa ctatccaaat tggagcaagt acaactaaag gtttaggtgc aggtgctgat
    28441 ccaatggtag gaaaacaagc tgccgaagaa gatcgtgagg ctatcgctaa tgcattaaaa
    28501 ggtgcaaata tgacctttat tgctgttggt atgggtggag gtaccggtac cggagcagcc
    28561 cctgttgttg ctcaaattgc caaagagcaa ggctcactaa ctgtaggcgt tgtaacaaaa
    28621 cctttccgct tcgaagggcc tcgccgtatg cgctttgcag accaaggcat taaagagctt
    28681 tctcaatatg ttgattctct tattataatt cctaatgata aattacgtgg tttaggtaag
    28741 caaacaacag cagtagatgc ctttgccgca gcaaatgatg ttttaagtaa ctgtgtgctt
    28801 ggtattacca atatgattac cagttcgggc ggttctaccg gtgcagatat taacgtggac
    28861 ttcgcggatg ttcgtacagt aatgtctggt aagggacacg ctatgattgg tacaggtttt
    28921 gctgaaggtg aagttggtga aggacgagcg gaaaaagcaa tgaatgatgc catttctagt
    28981 ccattacttg aaaatgtgga tatttcaggt gcaagtggta tgctcatcaa cattagtgct
    29041 gggacagatt tcttattaga agaagtttat gctatgatgg acttaattta tggctttgca
    29101 acagaagatg ccgcaattgt atttggttgt aactattacc ctgaaatgga tggaaaagtg
    29161 agtgtcactc ttgtcgcaac aggaataggc caacctgagg aagctctaca tatgccacat
    29221 aaggctcagc cagtatatgc acagcaagga aatcatgttc aagctacaca gcctactcag
    29281 ccaaaccatg cggtacaaca accaaacttt actcaaccgt caagttatgg tcagccaaat
    29341 caatttagtg gtcaaccaca accactacaa caacctgtgg ctccaaaacc acaatcggtt
    29401 gatacagcac aaatttttaa cccaaattca attccgggtt ttatgagaaa tagtcaataa
    29461 cttccactca tttcggaagt aaggacaaaa tatgactaaa caaagaacat taaaacaagc
    29521 agcaaaagta acaggtattg gcttacatag cggcaaaaaa gtaaccttaa cgttacgccc
    29581 tgccccagct aatacaggag ttatttatgc ccgtaccgat ttagagcctg tcgtttattt
    29641 ccctgcaagc gcagactcta ttcgtgatac acaattatgc acatgtatgg taaatgatga
    29701 tggtgttcgt atttcaacag tagaacattt aaacgcagca atgtcagcat taggcttaga
    29761 taatgttatt gttgaagtag atgcacctga aattccgatt atggacggta gttcaagccc
    29821 atttatctat cttttattag atgccggcat cgaagaacaa gatgcaccga agaaatttat
    29881 tcgcattaaa gaaacagtac gcgttgaaga aggcgataaa tgggccgaat taaaaccata
    29941 caataaaggt tttaaattga acttcactat tgactttgag cacccattaa tccccaaaaa
    30001 tgtagggagc tattccattg atttttctgc tgagaacttt attcagcaac taagtcgagc
    30061 gagaaccttt acatttatga aggatgtaga atacttgcaa tctattggtc ttgcattagg
    30121 tggaagcctt gataatgcta ttgtattaga tgattaccga attctaaatg aagacggttt
    30181 acgatttaaa gatgaactgg ttcgccataa aatgctggat tcgataggtg acttatatat
    30241 gtgtggttat aatatcctag gtgaatttag tgcatataaa tcaggtcatg gcgttaataa
    30301 taaattatta agagctgtat tggaaaataa aaacgcttgg gagtttgtta cctttgaaga
    30361 taaagcagaa gtcccacaag gttaccaagt acaacaagaa atttttattt agtctaaatg
    30421 gcttaaaaga cgaacagaaa tgttcgtctt ttattttgca aattttttct aatatttaac
    30481 cgcttgcaac ccgcctcatt agcgattttt tcgcccttat ctatttactg tttaaaaaaa
    30541 cagttgtact atatacccat acagttaatc ttgtgtggtg tattatgctt actcaactta
    30601 ctattaataa ttttgcgatt gttcgccatc ttattcttga attaaatgaa ggtatgtctg
    30661 ttattaccgg tgaaaccggt gccgggaaat caatcgctat tgatgcctta gggctatgct
    30721 tgggttatcg ttctgaaagt gggatgatta gaaacggttc ggacaaagca gatataagtg
    30781 caacctttac tatgcagcca catagccctg cttatttatg gctacaagag catgaactgc
    30841 ttgatgaaga taatcctcaa gagtgtatct tacgccgtat gattaatatt gatggacgct
    30901 caaaagcctt tgtaaataac cgatcattac ctgtttcaca acttcgagag ttggggcaat
    30961 atcttattca tttaaatggg caacacgcac cacaattact cctaaaaaac gaatatcaac
    31021 ttgaaatagt cgatcattat gccacgttac agcctctatt gatgaagatg gcaaagcaat
    31081 atgggaattg gaaagaactg aataagcagg taaaaaattt ccaaaaacag tgccaagaaa
    31141 atgaagctcg caaacagcta ttagaatatc aagttgagga attagatgaa tttgcaatta
    31201 aagcaaacga atttgaagaa atggaagaga aatacaatat cttgtcttct tccgaggagc
    31261 ttactgagct ttcagatgaa atcacacgct tattaagtga tgatgaaatc aatgcaaaca
    31321 gtctgattta taaagcgtta cgcaatgcag aaaacttggc tgaggttgat agccaatatc
    31381 agggcatttt agatatgctt aatgaggccc tgattcagat tcaagaagca agctccgaag
    31441 tggctcaatt agccagtaaa attgaacaag atccggaatt actacaggag ctggataata
    31501 gaattgcaca aactatatcg ttagcacgca aacaccatat tcaaccgaat gaattatggc
    31561 aatatcacgc gacattaaaa gcagaactac aggaattact ggattttgaa gataatgaag
    31621 aacaactcat tcaaaatgaa aaacaagctt accaagagtg tataacatta gcagaagaaa
    31681 tttaccaaaa acgtctagat gccacacata agctctctga acaagtaaca aaacaaatta
    31741 aacacttagc aatggaaaac ggtgagttct ttattcatat agaacataat cttgaaaaaa
    31801 tgtctgcaaa tggtgctgac tatgtcgagt ttaatttacg cagcaattta ggacaacaac
    31861 cccaaccact ggcaaaaatt gcttctggtg gtgagctatc tcgcatttct ctggcagtac
    31921 aagtgcttac cgcaaataaa ctttctacgc caactattat ttttgatgaa gttgatgttg
    31981 ggattagtgg ctctgctgcc actacagtcg gaaagctact gcgtaagcta ggcgaaaaat
    32041 gccaagtatt atgtgtaacc catttacctc aagtggcaag ttacggcaac cagcagttta
    32101 atgtacaaaa atatgtagaa aataatcaaa ctgaaacgca aatgacatta ctcacagaag
    32161 cagagcgtat tcacgccttg gctcgactat taggcggaag cgaaatcacc gaaacggttt
    32221 tagctaatgc aaaagaaatg ctaaatttag cgaaaaataa cgaatagcca aaaagaaaaa
    32281 tcgcatcaat gaatattgat gcgattatga atttggtgga ggtaaacggg atcgaaccga
    32341 tgacctcttg catgccatgc aagcgctctc ccaactgagc tataccccct taatacaagc
    32401 ggaataatat gctttccgct tgaagatgtc aatggcttta atcaagcaag gtgttgattg
    32461 attaaaaact agctattcgc ctgaataaac tcaatcgctt tttgtaagcg agctaaggtt
    32521 ctttctttac cgactaattt ggcggtgata tccattgacg gcgattgccc acttcctgtt
    32581 accgctaaac ggaacggcat accgactttg cccataccaa tttccagctc ggcagcggtt
    32641 tggttcattg cctcgtggat attttccacc gtccagtcat tgcaagcggt caatttttcc
    32701 aataattttg caagtggagc aacggcttcg gctttgaagt ttttagcagc agctttttcg
    32761 tcgtaagcct taaattcttg atagaaatag cggctgcttt cggcaagctc ttttaaggtt
    32821 ttgcaacgtt cgcccagtac agggataatt tcttccaatt ttggaccgct tgtgaaatca
    32881 atgccttgag tttgcatatg ccattcaaga tgttttgcca cataacttgg ggcaagactg
    32941 cggatatagt gttggttcaa ccattgtaat ttttcagtgt taaatgcact tgccgattta
    33001 ctgactgaat gaatgtcgaa cagctcgatc atttcgtcac gagagaaaat ctcttggtcg
    33061 ccgtgtcccc agcctaaacg cacaaggtag ttaattaagg cttccggtag atagccgtca
    33121 tcacgatatt gcattacgct caccgcaccg tggcgtttgg agagtttttg cccgtcatcg
    33181 ccgttgatca ttgaaacgtg ggcgtaggtt gggattggtg ctcctaatgc tttcaaaatg
    33241 ttgatttggc gtggtgtatt gttgatatgg tcttcacccc gcacaacgtg agtaatgccc
    33301 atatcccagt cgtccaccac cacacagaaa ttgtaggtcg gcgagccgtc agtacggcga
    33361 ataatcaagt catctaattc gctattggcg atttcaattc gcccacgcac cgcatcgtca
    33421 aatactaccg agccttcggt cgggtttttg aaacgcacaa catgtggttg gctcgggtcg
    33481 ttttgcggat tgtgtaagca gtgctgatcg tatttcgctt tctctttatt tgcttcttgc
    33541 tctgcacgta cttcgtctaa acgttctttc gagcagtagc aacggtatgc cgtgccggct
    33601 tctaacattt ggtcgatcac ttggttatag cgatcgaaac gcttggtttg aaagtatggg
    33661 ccgtgttccc acgccaaatc cagccattcc ataccctcta aaatagcggc ggttgcctca
    33721 ggggttgagc gttcaagatc ggtatcttca atacgtaaca caaattcacc atcattatgc
    33781 ttagcatata accaagagta gagcgcggtc ctcgccccac ctacgtgcaa gtagccagtt
    33841 gggctaggtg caaaacgggt acggactttt acattcggat ctaaggggaa aagggtttca
    33901 attttcattt tatattgcct aattgatgat tcttaagaaa aacttgtcta ttttactacg
    33961 cttgagggtg aatcatagta aaaaattaaa tttgcggggt aaaaaatcag caaacggggt
    34021 aaaaagaaca aaaagggttt gacgaaacag caaaaatctc tataattcac ttccacaaca
    34081 gcgggcgatt agctcagttg ggagagcacc tcccttacaa ggagggggtc actggttcga
    34141 gaccggtatc gcccaccact tcaacttaag tgtttcgttt tcaaattccc tttgatttta
    34201 agtctcaagt gggcgattag ctcagttggg agagcacctc ccttacaagg agggggtcac
    34261 tggttcgaga ccggtatcgc ccaccactta agactaaaat cataaacttc aaatggcgat
    34321 ttttcgtatc tgaagggcga ttagctcagt tgggagagca cctcccttac aaggaggggg
    34381 tcactggttc gagaccggta tcgcccacca tctatttagt atcaaagcct aaaacttata
    34441 tcataatcta ataacccctt taaagtcata actaaaaagg gaaaataaat tcagatggcc
    34501 tgttgcatct gcataaatgc ctttctacgt gcagaaatta atctttttct atctttaatt
    34561 tgcttaattt gacgcaggcg taatttcctt gtcagtaggg atttcttttt cttcaatttt
    34621 ctcataagaa gaattctcct gttttatttg accatctggt aaattttctt gttcttgcat
    34681 cttttgctct tcaactcgtt gataattaat aatactacca taataacgcc gtatattttc
    34741 aacatactgt aatgcttcat atcctcgagc atagccgtat tttagattag cataataacg
    34801 tttttccgca agcaatggca gattcttttt aacatcaagc caattatccg gatcaccacc
    34861 aagttgtttt gttaatcgac gaagatccaa caagtgcccc aatcccatat tatacgctgc
    34921 taggctatac caaattctat ctgcttgagg aatagtttcc ggcatttgtc tcattagcat
    34981 atgtaaatat tcagatcccg ctttgatact ttgtgcaggg ttagtcctat cagaaatttt
    35041 cattctatct gccgtatctt ttgtcagcat cataattccc ctcactccgg ttggagaagt
    35101 tgcattagga tcccaatgag actcctgata ggcgatagcc gccagcattt gccattctaa
    35161 ttcaccttta tgtgcccgaa aaaggggttc atatttaggt aaaatagttt taattgcatt
    35221 caaatagctc tgaatatcaa cataatcaaa cttagctaaa tgattaaaat atttctcttc
    35281 tattcttgat atcagcccag tttccataga ataagacata aaatccagca gcacagattg
    35341 cagttcacta taagaactat ttgctaaata ccataacact gggttttcat cagttaaatc
    35401 aaaccctacg gctaaattag gattaatatg ctgtgcagca gaaatatcaa ccgacattgc
    35461 aattgtatgt gaaatttcac cttgtgcgac ttttaacaat agctcttctt gtgtaaattt
    35521 atccgagatc tgccatttta gttccggatt atccacctta agctgattta atattggaat
    35581 taccgcagaa ccggctggaa taatcacatt ttcccgcaaa tcggaaagtc gatatggtct
    35641 agcacttccc tttttataaa caagctgcca agaagccgaa taataggaag gacctatctg
    35701 aaattcatcg tttaattcag aatggtaaag cagcccagcg gcagcaatat caacatcatt
    35761 atttcttaag gcctcaaaca atttctcgct actatcataa gttttaatat caagattgac
    35821 ctttaaatat tgagcaaagg ctgttgctaa atcatattca atgccacttt ttccttcagg
    35881 accaacaaag taagaaagtg gatggttgat cattccaacc tttaacgttt tgctttgctg
    35941 aatttgtgta taatgatttg cttctgaatg aatgattttt tgccaaggaa aaatcatatc
    36001 ccaagcccac agtaacaatg ctacggcaat aaaaaggcga gcaattaatc ctttcaattt
    36061 aaaatcctca ttatttcaag ctaagcatta agcctatctg aaattacaaa ttaacggaat
    36121 aatactttat agtttaatta tttattaaaa
//
LOCUS       DANMBQ010000011        31383 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.011, whole genome shotgun sequence.
ACCESSION   DANMBQ010000011 DANMBQ010000000
VERSION     DANMBQ010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 31383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31383
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.011"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            236..982
                     /locus_tag="PXE92_000500"
     CDS             236..982
                     /locus_tag="PXE92_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5759780.1"
                     /translation="MQLRHKQIMEYIQQFDEANVQELAEHCGVSIETIRRDLNKLDKD
                     GLLHRTHGGAVSHKKRDIGRSFTTRQRLNSEAKRSIAENVLEYLQPESVIALDASSTS
                     WNVAQRIPNIPCTVVSSSMRIIYSLSHKPHIKTIATGGIYSEKYDAFYGPLSEQLLTR
                     LKIDLAILSCTGIADGAIWESNEINISLKRKLIANSKQVFLLADHSKFERKDLFRIED
                     LSCIDKLFINQPPPDFLKNYCLAHQIEIII"
     gene            1178..2941
                     /gene="fucI"
                     /locus_tag="PXE92_000501"
     CDS             1178..2941
                     /gene="fucI"
                     /locus_tag="PXE92_000501"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HDL5759781.1"
                     /translation="MTTLKSTPVKIGIRPTIDGRRLGVRESLEDQTMNMAKAVAQLIQ
                     SEVRHPNGDFVECVIADSTIGGVAEAAACAEKFKRENVGAVITVTPCWCYGSETIDMD
                     PHMPKAIWGFNGTERPGAVYLAAALAGHSQLGLPAFSIYGTEVQEADDQSIPDDVREK
                     LLHFARAGLAVATLRGKSYLSIGSVSMGIAGSIVNQQFFQEYLGMRNEYVDMTEIKRR
                     LDRHIYDAEEFKLAMSWVKTYCKEGIDVNAPENQRSPEEREKLWEDVVKMTIIARDLM
                     VGNPRLAELGYSEEALGHNAIAAGFQGQRQWTDHLPNGDFMEATLNSTYDWNGVRAPY
                     IMATENDSLNGVNMLFGNLLTGQAQIFADVRTYWSEDSVERVTGWRPESGFIHLINSG
                     SAALDGTGQHTDRAGKPTIKPAWEVTEEDGKRCLENTCWCPAVHEYFRGGLSSQFLTK
                     GGMPFTMHRINLIKGIGPVLQIAEGWSIDLPENVHDILNKRANETWPTTWFVPRLTGK
                     GAFTDVYSVMANWGANHCVATFGHVGADLITLASMLRIPVCVHNVEDKDVFRPSAWNG
                     FGQDKEGQDYRACANFGPLYK"
     gene            3135..4568
                     /gene="fucK"
                     /locus_tag="PXE92_000502"
     CDS             3135..4568
                     /gene="fucK"
                     /locus_tag="PXE92_000502"
                     /EC_number="2.7.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
                     /protein_id="HDL5759782.1"
                     /translation="MPISLIFDCGATNLRTIAINQAGEIVAAHHLPNNTQPDVESPEF
                     HIWDIEEIWSKLMTCAKQTLSQLSEQQRQEIVGISVTTFGVDGALFDKNGKQLYPIIS
                     WKCPRTLPIMENLANYLDVEALYQRNGVGHYSFNTLFKLLWLKENKPEIYQQAESFLF
                     ISSILTYLLTGVQTTDRTMAGTSMMTNIENDSWDKTVLDLLGLTENHFPPMKSAGEVV
                     GTLKGEISQELGLSGQIPVISCGHDTQFAIFGSGAGYNQPVLSSGTWEILMVRTPKAK
                     PQWQFVQNGLTIEFDSQSGYFNPGVQWVASGVMEWFGKRFFSDIANTEHYYRTMIEEA
                     AEVPAGSNGVKLVGNFDGTTAKTGSIIGLSMHITRGEIYRAGLEYMAHRLKEGLDVLQ
                     EVGHFNAESLICVGGGSKNALWNQIRADVLNRPIDVVDFPESTVLGAAMFTFTGAGVF
                     ENPNAAQQAMKPNVKRVEPSSNSQFYK"
     gene            4643..5074
                     /gene="fucU"
                     /locus_tag="PXE92_000503"
     CDS             4643..5074
                     /gene="fucU"
                     /locus_tag="PXE92_000503"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HDL5759783.1"
                     /translation="MLKGIHPAISPDLLKVLAEMGHGDELVLSDAHFPAHSIHQNVIR
                     ADGLSVATLLEGISALFEFDQYVEAPLAMMQAVKGDTLDPSVEERYLNAIKKVNGTAP
                     KIERVERFAFYDRAKNAYAVVITGELAKYGNIIIKKGVTPV"
     gene            5134..5787
                     /locus_tag="PXE92_000504"
     CDS             5134..5787
                     /locus_tag="PXE92_000504"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HDL5759784.1"
                     /translation="MDRKILARQIIDTCLEMTRIGLNQGTAGNVSVRYKDGMLITPTG
                     TPYEQMTEDSIVFVDGNGKHEEGKLPSSEWQFHLAVYEARPELNAVVHNHAKNCAAVS
                     ILGEPIPAIHYMIACTGTNHIPCVPYAPFGTHQLADYVREGIKHSKAILLAHHGLITA
                     DKTLEKALGIAHEVEVIAEWYLKLLATGKPIPTLNKEQMDIVLGKFKSYGSWVESEQ"
     gene            5849..7378
                     /locus_tag="PXE92_000505"
     CDS             5849..7378
                     /locus_tag="PXE92_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5759785.1"
                     /translation="MQNEVILTMKNISKSFAGVNALKGVELTLRKGEVHALMGENGAG
                     KSTLMKCLLGVYQADEGEIIYKGQPVRFESVLEAQKAGISMIFQELNLIPHLTVAENI
                     FFAREPLKHGLVDKDKMVEESAKLLNFFEIDVDPNDEVRMLSVAKQQMVEIAKALSFD
                     VEVLIMDEPTSALTEKEIDKLFELVDRLRAKGVSIVYISHRMEELKRICNHITIFRDG
                     TYVSNHKFNEITMDEIITKMVGRSLDNHFPPKTAVVTNDIILSIMNAERKGVFEPLNF
                     DLRKGEILGITGLVGAKRTELARAIFGADPLDSGEIFVHENKVSIKDPSDAIKAGIAY
                     LSEDRKLNGVAVRMSIRENITMASMDKVANQIGVISYDEEEKASKTFIDKMEIKTPTI
                     EQKVQNLSGGNQQKVVIGKWLFREAKVMIFDEPTRGIDVGAKYAIYQLLDELAANGVG
                     VIVISSELPEVLGVSDRIIVMREGRMTGMLETKKTNQEEIMHYATGVKNMFAREYGVE
                     K"
     gene            7375..8373
                     /locus_tag="PXE92_000506"
     CDS             7375..8373
                     /locus_tag="PXE92_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5759786.1"
                     /translation="MNEKQKEMLRKMAALAGLVLLIIFFSVTNEYFFTSNNIMTVGLQ
                     TSTIALIGIGATCVILTGGIDLSTGSVVALSGVAAAMIVNAGVPVPLGMILGILVGGI
                     CGLINGILVTRMKLPPFIATLGMMMVARGLALYVTNAAPVSGMPESFANLGNGALFKI
                     VEEGANGLPKVVFAGIPYPVIIMIFITVLFTFALSKLKVGRYLYAIGSNEEAARLSGI
                     KTNIVKIYAYVASGLLSGLTGVILASRLVTAQPNGGVSYELDAIASAVVGGTSLMGGV
                     GTIPGTLIGSFIIGVLRNGLNMNGVSSFVQMIVIGLVIIVAVSLDQLRQSKKAGKK"
     gene            8397..9344
                     /locus_tag="PXE92_000507"
     CDS             8397..9344
                     /locus_tag="PXE92_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5759787.1"
                     /translation="MKKSALFTATLFGLSTLFAGSAMAKSDEIAVIVKSANSTFWQNV
                     RKGAETAGKDIGGQYKVTFQGPEAETAIDAQVNMVDNAVNRGVAGIVLAASDPVALVP
                     AVKKAYESGIPVVLIDSGINSDGKYYQSFLATDNRAAGKLAAEKLLAKVKGGKVAVMS
                     FTQGAASAIERTGGFIDEIKAKADYKLVGPYYSDSDMTKALNQTEDVLGSNPDLAAIF
                     GANEPTAVGMARAVKQKGFAGKIVAVGFDGNSDLQNFVRDGTLDGIVVQSSYQMGYKG
                     VDTIGKLIKGEKVEKVIDTGVVYVTKENIDSEEAKGVLY"
     gene            9400..9651
                     /locus_tag="PXE92_000508"
     CDS             9400..9651
                     /locus_tag="PXE92_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIB"
                     /protein_id="HDL5759788.1"
                     /translation="MSNTLTDKALVVIAALGGRENIVDVYACITRLRVEVKNTDIVEW
                     DKIKSVGALGVVTSGSVIQSIFGSDAEAYRDEIKRILNI"
     gene            9780..10931
                     /gene="fucO"
                     /locus_tag="PXE92_000509"
     CDS             9780..10931
                     /gene="fucO"
                     /locus_tag="PXE92_000509"
                     /EC_number="1.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
                     /protein_id="HDL5759789.1"
                     /translation="MANRLILNETSYHGKGAIQNIVHEVTSRSFKKALVVTDKDLIKF
                     NVAQKVTALLDAAGLPYEIFDEVKANPAVDVIKAGVAKFKASSADYLIAIGGGSPIDS
                     AKAIGIIINNPEFSDVLSLEGVAPTHQKCVPIIAIPTTAGTAAEVTINYVITDEAKKR
                     KFVCVDVHDVPAVALVDPDMMESMPKSLAAATGMDALTHAIEGYITKAAWELTDALHL
                     KAIELIGRSLRGAVEKNPKDVEAMALGQYVAGMGFSNVGLGAVHSMAHPLSAYYDTPH
                     GIANAVLLPYVMEFNKNYTGEKYREIARAMGVKGVDEMSQEEYRNAAIAAVQQLSQDV
                     GIPPKLHQIGVKEADLAALSVDAFNDVCTGGNPRDCTAEELLEVYRIAY"
     gene            11198..12643
                     /gene="aldA"
                     /locus_tag="PXE92_000510"
     CDS             11198..12643
                     /gene="aldA"
                     /locus_tag="PXE92_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDL5759790.1"
                     /translation="MVKQHKMYINGEFVPALDGRTLAVYNPATEKAISEVPRGGADDA
                     KIAIDAAEAAQEAWERLPAIERGKYLRQIAVGIRERADEIARTISEEMGKTLSLATVE
                     VHFTADYLDYMAEWARRYEGEIIQSDRPNEHIFLYKKAIGVTTGILPWNFPFFLIARK
                     AAPALVTGNTIVIKPSEDAPNNAILFSEIVHQVGLPKGVFNVVTGYGNEVGPELSGNE
                     KIGMVSFTGSQFAGQKVMEAASKNIIKVNLELGGKAPAIVLDDADLELAATAVVNSRI
                     INSGQVCNCAERIYVQSSIKEQFVQKLVEKMQAVKYGNPLEQQDIDMGPMVNEKGLHK
                     VQEMVTHALHQGGNLVLGGNVVEGTGYYFEPTIIDNVDNSMDIMRHEIFGPVIPVATF
                     DTIDEAIRLANDCEYGLTSSVYTQNINKAMKVISRLKFGETYVNRENFEAMQGYHAGW
                     RKSGIGGADGKHGLEEYLQTQVVYLQFDDKV"
     gene            12899..13546
                     /locus_tag="PXE92_000511"
     CDS             12899..13546
                     /locus_tag="PXE92_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HDL5759791.1"
                     /translation="MSIFQQTNPNRRRYGLAVFIGIIAGIISAFVKWGAEHPFPPRSP
                     IDLFTAACPQPVLDAMNAAADQVAAKTIALQECSRAFLNPPHVFLRDYIGIDPTEAAF
                     TFADHAFNWIGVTHMIFSLVFAIGYCIVAEIFPKIKFWQGIGAGIIANICVHYITFPA
                     LGLTPPVAEWPLYEHISELVGHIFWFWTIEVIRRDLRNRITREPDAEVPLDQPFR"
     gene            complement(13679..15055)
                     /gene="trkA"
                     /locus_tag="PXE92_000512"
     CDS             complement(13679..15055)
                     /gene="trkA"
                     /locus_tag="PXE92_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HDL5759792.1"
                     /translation="MKVIILGAGQVGSTLAENLVSEDNDIVLVDNDPTRLDKLKDKHD
                     LQVIRGEYASPQTLRDAGAGDADLLVAVTNSDEVNMIACQIAYTLFNVPTKIARIRSA
                     DYVRERERLFNDDVLPIDHIIAPEILVKEDILRLIHYPGALQITHFADELVSIVNVKA
                     YYGGPLVGYPISALRDHLPHIDARVVAIFRQDKAIVPQGSTIIEAGDEVFFICATQHI
                     RAVMSELQRLDRPHKRIMIVGGGSIGSSLARDLEDQYRVKIIERNPVRAEKLAEKLSK
                     TMVLTGDASDEELLFEEHIENIDLFLAVTSDDEANIMSALLAKRLGAKKVIILVQRPA
                     YLHLIQGGTIDIAISPQQATISALASYVRKGDILQVSSLKLGVAGAVEIIAHGDATTS
                     KVVGRQIRELKLPQGAIVGAVVRGEEVIIAHKSTMIAENDRVIIFVNDKKQIDEIEKL
                     FQLGVFFL"
     gene            complement(15055..16386)
                     /gene="rsmB"
                     /locus_tag="PXE92_000513"
     CDS             complement(15055..16386)
                     /gene="rsmB"
                     /locus_tag="PXE92_000513"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HDL5759793.1"
                     /translation="MKKQSFKALSSRAISATIILQVLDQGKSLSTLIPDAQKQLEPKD
                     LPLVQEITFGVCRVLPRLESIIKLLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAA
                     VDEVVNATKTLKLDSFRALTNGVLRRFLREQEEILAKVDKHWQTLHPEWLVNKLKKAY
                     PNWREIVEANNQRPPMWIRVNQQHIKTNDYAALISELVEPEFAKNSENPTACVPKCAL
                     LLERAVNVNQLPHFEQGWATVQDAHAQWSAELLGAENGETVLDACAAPGGKTTHILEK
                     APKAKVMALDIEESRLSRVRENLVRLGQIAQVICGDASKPEEWLEEGVLFDRILLDAP
                     CSATGVIRRHPDIKWLRKEGDIAELATLQGEILKALWQRLKPNGILLYATCSVLPQEN
                     SEQIQRFLQDTPNAKQLEIDFNGEKVLEKQFFPQPNGGDGFFYAKLQKVAE"
     gene            complement(16438..16863)
                     /locus_tag="PXE92_000514"
     CDS             complement(16438..16863)
                     /locus_tag="PXE92_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL5759794.1"
                     /translation="MYNKLLIAIDLADLKSAKYVVDTALQMTAKNPNAVYRVVSIIEP
                     VDNSLISAFLPKNFDKEVVAEANQKLHEFTKNHFPEGSKVQHIVAYGTIYEEICRIAD
                     EKSVDLIMMLASSKPNAKGLSSNTVKVARNTTKPILVLR"
     gene            complement(16956..19604)
                     /locus_tag="PXE92_000515"
     CDS             complement(16956..19604)
                     /locus_tag="PXE92_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter permease"
                     /protein_id="HDL5759795.1"
                     /translation="MSVESKVDYDDLQDMVASNDSGGRTPSGLAKKAIVYVAILWSVF
                     QIYYASPLPFVFQEWLTHAGINLNVVVDDTKARSIHLAFAMFLAFLSYPAFASSPKHH
                     IPKIDWVFAIVGAGLALYYIFFYEGLVKRFGAPNTQDIIAGCLGILLVLEATRRSLGL
                     PLVIIAIVFLIYNFFGQYFPADWIVSHRSGSLSQIINQQWITTEGVFGVALGVSTKYV
                     FLFVLFGALLDKAGAGNYFIKTAFAYLGHLRGGPAKAAVVSSALTGLISGSSIANVVT
                     TGTFTIPMMKRVGFTKEKAGAVEVASSVNGQIMPPVMGAAAFLMIEYVNMPYSQLITH
                     AFLPALISYIALVYIVHLEACKMNLQGLPRAEEPSPILVFLLRTVASILVIVGLAIGV
                     YYGLGWIRDVAEDYAFMIVCAFLGLWYLLAIRRVASYPDLEADDPNSEIVSLPKRKPT
                     VNAGLHYLIPVVVLLWCLMVEMLSPGLSAFWGTITLIFIQLTQRPLLNFFRKESVTKE
                     IIKQGVRDVVDSLEAGGRNMTGIALATATAGIIVGVVALTGFGVQLSSVIELLSMGNI
                     VLMLILVAVFSLILGMGLPTTANYIVVSSLMATVIMEVGRQNGLIVPLIAVHLFVFYF
                     GIMADVTPPVGLASFAAAAISGGSPINTGMVAFKYSLRTVILPFLFIFNTDLLLIDLR
                     YPGHGWVVFITATVGVLAFTSATMQYIVTKNKWWETALLVVAAFALFRPGFFMDRIYP
                     SERHIEPVQFEEQLLASKVGQNVTLKVEGLNPYGKEIEFYAQLPVPEGATGEERLKNL
                     GLTLIQTDEKIKVDGVETPKVVIDMVEMDSPAAKAGLNWDQTIHYIAVPQDAPSKDWI
                     FIPALLLVFGIVANQRRRVKKQCVIA"
     gene            complement(19806..20768)
                     /locus_tag="PXE92_000516"
     CDS             complement(19806..20768)
                     /locus_tag="PXE92_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HDL5759796.1"
                     /translation="MKKLVKLSFLASLVMGTASVQAAETFVTIGTGGQTGVYYVVGQS
                     ICQLVNRDSAKTGLKCNAPSTGASVANLNAIAAKEMDMGIAQSDWQYHAYNGSSSFEG
                     KKNDKIRAIFSLHPEPFTVMARTDSGIKSFDDLKAKRVNVGDPGSGTRATMNVILAAK
                     GWTDKDFKVASELKPAEMASVMCDNNLDAITYNVGHPNGALKEAAASCDAKLVPVTGP
                     EIDKLVADHSYYAKATIPGGLYKGSDEPTETFGVYATLVTSADVDADKVYNVTKAVFD
                     NFDRFKRLHPAFEHLKQEEMIKNALSAPLHEGAIRYYKEKGWIK"
     gene            complement(20952..22799)
                     /gene="selB"
                     /locus_tag="PXE92_000517"
     CDS             complement(20952..22799)
                     /gene="selB"
                     /locus_tag="PXE92_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HDL5759797.1"
                     /translation="MIICTAGHVDHGKTSLLQALTGTNTAHLPEEQKRGLTIDLGYAY
                     LPIENDILGFIDVPGHQRFLSNMLAGLGGIQHALLVISAEEGIKPQTEEHLDILHLLN
                     FQHIMIVITKADRAEETQISHLIEQVKTSYPFLAEAKTFVTSAKTQQGIEELKAHLIQ
                     LNQQHTQTHKPFRYAIDRVFNVKGAGLVVTGTTVAGKVSVGSELFLSNGKKVRVKAIH
                     AQNTPSETGVAGQRLALNIANVEKEEIKRGDWITELEPKFATDRITVQLTANQAFKEN
                     SIVHLYHFASHITGKLNLLEGQQAVKNQQFFAEVILDEPLHIAVGDKLIIRSGDDSLT
                     LAGAEVLEIHSPKRHKRTEARLALVKNLAKTTACNDFATRLDLYLQNRAMDLSLLLWA
                     EQCFAEDIAKLGFDVSSKWLFNSDFKAQAQQRVLEKMAEYHLQHQDQIGVTKARLYRI
                     ALLDLPENLANQFIEDLVEQKALVNSRGWLHLPEHRIELNADELQIWQQIRPLFEATN
                     QALWVRDIASQLSIDETQMRNLLYKVGKLGYLIPIVKDRFLLSEQIGQFATLIKDFIA
                     QNGSISVNQLRDELQYGRKLTVQLIEYFDRSGFLRRKGDVHLLRDSETF"
     gene            complement(22809..23105)
                     /locus_tag="PXE92_000518"
     CDS             complement(22809..23105)
                     /locus_tag="PXE92_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5759798.1"
                     /translation="MMKFDYNIVWLQKAEIKLFYQADYILQQSQNPIIAEQFYDAIKS
                     EVDKLSFTADVYRLRKKKEIPILNGKYQVKFLIGQENVYIVDFKSARQNSYSFL"
     gene            complement(23102..23278)
                     /locus_tag="PXE92_000519"
     CDS             complement(23102..23278)
                     /locus_tag="PXE92_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759799.1"
                     /translation="MELILAQDLAKLRTDKPQSFYTNDELDLLHQLENGLIETKSHAQ
                     VMEDLRKKLGITEK"
     gene            complement(23347..23979)
                     /gene="pdxH"
                     /locus_tag="PXE92_000520"
     CDS             complement(23347..23979)
                     /gene="pdxH"
                     /locus_tag="PXE92_000520"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005575912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HDL5759800.1"
                     /translation="MDLHHIREDYTKKVLSIRDCHSNPITQFEQWLSEAINAKVNEPT
                     AMNIATVAANGRPSSRMVLLKEVNSQGFVFFTNYQSRKGWEIADNPFGCLTFFWAELQ
                     RQVRIEGKIAKIPEAESDAYFDSRPYTSRLGAWASEQSQPIENYKALLLKSAQFALKY
                     PLSVPRPPHWGGYILIPDSIELWQGRSSRLHDRIHYWLENNEWKKERLSP"
     gene            complement(24037..25419)
                     /locus_tag="PXE92_000521"
     CDS             complement(24037..25419)
                     /locus_tag="PXE92_000521"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HDL5759801.1"
                     /translation="MQQLFRQIPSLDLLLKKPQAVELCQKFAYSSVAEQARSLLTQAR
                     QFISQQQALPDFIADENLFFIRLEQKVQALSEVKIRSVFNLTGTVLHTNLGRGLWSEK
                     AIQAATNAMRNNVALEFDIEAGKRSHRDNYISELLQILTGAEAACIVNNNAAAVLLML
                     ATFAQGKEVIVSRGELVEIGGAFRIPDIMAQAGCKLVEVGTTNRTHLKDYRNAITENT
                     AFLMKVHTSNYHIEGFTSSVSEEELVALGKEFNLPVITDLGSGSLTDMQALNLPAEPK
                     VQQKVAAGVDLVSFSGDKLLGGPQAGIIVGSQAMISQLQQHPLKRVLRCDKVILSALE
                     ATLRHYLFPEQLTDNLPTLHLLTQPLETLQHKAERLKQALHKRLNSAYILQIELSLAQ
                     IGSGALPTETLPSVAVTISAEKQSDLIALEQQFKTYPSPIIGRFAQQKFWLDLRSVAE
                     FDKLIEMLEY"
     gene            25487..25581
                     /locus_tag="PXE92_000522"
     tRNA            25487..25581
                     /locus_tag="PXE92_000522"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:25521..25523,aa:Sec,seq:tca)
     gene            25788..26477
                     /locus_tag="PXE92_000523"
     CDS             25788..26477
                     /locus_tag="PXE92_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HDL5759802.1"
                     /translation="MSTLSRDSILSQIQNGLIASCQPVDDGPMDKPEIVAAMAAASVI
                     GGAKGIRIEGVDNLKAARAAVNVPIIGIVKRDLPDSPVRITPFLEDIDALAEAGADII
                     AVDGTFRTRPVSIEEAVKRIHEKGCLAMADCSTLEEGLHCQQLGFDIVGSTMSGYTGG
                     EMPDEPDYQLVKDLKAAGCNVMAEGRYNTPELAKTAIEIGADYVTVGSALTRLEHIVS
                     WFADSVKSAQK"
     gene            26487..27389
                     /locus_tag="PXE92_000524"
     CDS             26487..27389
                     /locus_tag="PXE92_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HDL5759803.1"
                     /translation="MRCLAIDIGGTKIATAIVQHNQVSQRQQIQTPTDKPQADQAGSL
                     HQAIGEIMQHYQGQFDFVAVASTGIINKGVLTALNPKNLGGLAEFPLKQSIEKHTDKP
                     IALLNDVQAAVCAEYLNEDQQAVKNFVFITVSTGVGGGIILNGELQIGSNGIAGHIGH
                     TLADPNGPLCGCGRVGCVEAVAAGRAIEAVSSQWEKPCSPKEVFERFRQGNPQAVELV
                     QKSAKAIANLIADLKISLDIQKVVLGGSVGLAEGYLPQVSNYLAEMPSVYHCVLENAL
                     SGQDAGLIGAAWWAENQLNQGFTL"
     gene            27414..28292
                     /gene="nanA"
                     /locus_tag="PXE92_000525"
     CDS             27414..28292
                     /gene="nanA"
                     /locus_tag="PXE92_000525"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HDL5759804.1"
                     /translation="MKNLKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYV
                     GGSTGENFMLSTEEKKEIFRIAKDEAKDEIALIAQVGSVNLKEAVELGKYATELGYDS
                     LSAVTPFYYKFSFPEIKNFYETIIRETGNKMIVYSIPFLTGVNIGVSQFAELFENEKI
                     IGVKFTAGDFYLLERLRKAFPNHLIYAGFDEMMLPATVLGVDGAIGSTFNVNGIRARQ
                     IFELAQQGKIKEAFEIQNVTNDLIEGILGNGLYQTIKGLLELEGVQAGYCREPMTKEQ
                     TPAQKEVTKQLKAKFL"
     gene            complement(28353..28559)
                     /locus_tag="PXE92_000526"
     CDS             complement(28353..28559)
                     /locus_tag="PXE92_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759805.1"
                     /translation="MDNKQTNGFNDIIVKADITQNIWSTGFYDIGRELKSENTRQEKV
                     RLKYNGDTLHRGRKSRMASLIASR"
     gene            complement(28517..29155)
                     /locus_tag="PXE92_000527"
     CDS             complement(28517..29155)
                     /locus_tag="PXE92_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759806.1"
                     /translation="MKKILLLVLLLTLATQADEGNNTQVCAEQQHQIIAHYFKISQEK
                     LSARTLASACKTAPNNSTETLVSYAVIEPKYSKENYQNDENTPKWTLFVARVNDNAIL
                     QSWEQDMEIDASIDVNADSLKIDTARYILNDKVRAFGVRFNNAARGPSAPEYSANDHL
                     MLFVPEKEKLKLVFDYPMTFWSILDDKETKTETQTWYCKWITNRPTASMILL"
     gene            complement(29397..30116)
                     /locus_tag="PXE92_000528"
     CDS             complement(29397..30116)
                     /locus_tag="PXE92_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5759807.1"
                     /translation="MSKPNIYDESFSERMKWIAKNSFKDNYSEFARAVGVAQASLSRW
                     VKGEADPSRSNLVKIAEVSNVSLEWLATGKESKPQSENTSIVAREFERLEKMADDIVS
                     MINSFRTINVSAGFGSFNEGVTKPDGQEPYADSLLQSLGVKAHNCGVFWANGTSMHPT
                     IADSDQMLVDFSKREPRGDDKIYLVQNGESVWVKRIRKEWDYIELISDNESYRPIQIT
                     AEEAQNLQIIGQVVHIGHSLV"
     gene            30293..30571
                     /locus_tag="PXE92_000529"
     CDS             30293..30571
                     /locus_tag="PXE92_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5759808.1"
                     /translation="MSVLNDVKKTAQRDWHKADILAELRKKGWSLRSLAKAGNVSHNT
                     LKSVLDKPYPKMERLVANAIGVAPEVIWAGRTAERIERNRRPTLTNKF"
     gene            30616..>31383
                     /locus_tag="PXE92_000530"
     CDS             30616..>31383
                     /locus_tag="PXE92_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5759809.1"
                     /translation="MSELSLKTHYSVAELLSFKLSSLPSAHKNVLEKAIRENWQSQKR
                     KGRGGGVEYELISLPTEVQQEIRTKLLKLLPAEISKGELSVVRQNIDLEQITDKQLST
                     ADARIMVVRWFLMQEVQLGLSRTKTLDQVIAAVASSEIPAEICKAIMAGNSKAGGKLK
                     LSKRTLHSWVLAYEAGENSAERLKQMIPLKTQKRAVPERCGWLQAFLPFYQTFSNVAL
                     TQAYAQFAMQYEGEDLPTESQVRYALKQLPDYVVQQGR"
BASE COUNT         9203 a         6734 c         6662 g         8784 t
ORIGIN      
        1 atattaaaaa taattctcaa caccaaacgt tcgcaaattt tacagagata aaaatgattg
       61 tcaattagtc tgaaatgaaa tttcacaaaa tatattacaa attttacaaa aagttcccta
      121 aatttaaccg cttgcaacac aaaatgtgat cgccttctaa aaatcaaatt tgcttgctcg
      181 acagtaacgc tacaagcggt taaatttgga gaaaaattta caaaaaggat agattatgca
      241 gctgcgacac aaacagataa tggaatatat acaacagttt gatgaagcta acgttcaaga
      301 attggcggaa cattgtgggg tttcgattga aactatccgc cgagatttaa ataagctaga
      361 taaagatgga ttattacatc gcactcacgg tggagctgtg agccataaaa agcgagatat
      421 tggtcgctca tttaccaccc gacaacggct gaacagtgag gcgaaacgca gtatcgcaga
      481 aaatgtgttg gaatatttac aaccagaatc ggtgattgct ttagatgcca gctcaacctc
      541 ttggaatgtg gcacagcgta ttccaaatat tccttgcacc gttgtcagca gttcaatgcg
      601 gattatctac agcctttcac acaaaccgca cattaaaacg attgccaccg gtggtattta
      661 ttccgaaaaa tacgatgcct tctatggtcc attatccgag cagttactga cccgtttaaa
      721 aattgatctt gccattcttt cttgtacagg cattgccgat ggggcgattt gggaatcaaa
      781 tgaaattaat atttccctta aacgtaaatt aattgcgaac agtaaacagg tttttttatt
      841 agccgatcac agtaaatttg agcgtaaaga cttgtttcgt atcgaagatt tatcttgcat
      901 tgataaatta tttatcaacc aacccccacc ggactttctc aaaaattatt gcttagcaca
      961 tcaaattgaa atcattattt agtgatttct gcccgatttt attcagaaat aaaacaaatc
     1021 gggcattctt ttttcactca tttttaccaa aatcccccat tttttgtgat cgcactcaca
     1081 aaatttaaac taaattcgca tttttcttca taactcatat tgcgtatgca taataaattc
     1141 aatcgcaaat ttttttaacc aatcgggaga actatttatg acaacgttga aatctacccc
     1201 tgtaaaaatt ggtatccgcc caaccattga cggtcgccgt ttaggagtgc gtgaatcact
     1261 tgaagatcaa acaatgaata tggcaaaagc cgttgcacaa ttaattcaat ctgaagtccg
     1321 ccacccaaat ggtgatttcg ttgaatgtgt gattgctgat tccaccatcg gtggtgttgc
     1381 cgaagctgcg gcttgtgcag aaaaattcaa acgtgaaaat gtcggagcgg tgattaccgt
     1441 aaccccttgc tggtgctacg gttctgaaac cattgatatg gacccacata tgccgaaagc
     1501 catttggggc tttaacggaa cagaacgccc aggtgcagtt tatttagctg ctgctttagc
     1561 aggtcatagc caattaggtt taccggcatt ctccatttat ggcacagaag tacaagaagc
     1621 tgacgatcaa tctattccag acgatgtgcg tgaaaaatta ctccactttg cccgtgccgg
     1681 cttagcagtg gcaaccttac gaggaaaatc atatttatct atcggctctg tttcaatggg
     1741 tattgccggt tctatcgtaa accaacaatt cttccaagaa tatttgggta tgcgtaacga
     1801 atatgtggat atgaccgaaa ttaaacgccg tttagatcgc catatttacg atgccgaaga
     1861 atttaaatta gcaatgagct gggtgaaaac ctattgcaaa gaaggtattg atgtcaacgc
     1921 accggaaaat caacgcagcc cggaagagcg tgaaaaactc tgggaagacg tggtgaaaat
     1981 gaccattatt gcccgtgatt taatggtggg taatcctcgc ttagcagagc taggctatag
     2041 tgaagaagcc ttagggcata atgcgattgc tgccggtttc caagggcaac gccaatggac
     2101 agaccatttg ccaaacggcg attttatgga agctaccttg aattcgacct atgactggaa
     2161 cggcgttcgc gcaccataca ttatggcaac tgaaaacgac agcttaaatg gcgtgaatat
     2221 gttgttcggt aacttattaa ccggtcaggc acaaatcttt gccgatgtgc ggacatactg
     2281 gagcgaagac tcggtagaac gtgtcaccgg ctggcgtccg gaaagcggtt ttatccactt
     2341 aatcaactcc ggctctgcgg cgttagacgg aacaggtcag cataccgata gagcaggcaa
     2401 accaactatt aaaccggctt gggaagtgac tgaagaagac ggtaaacgtt gtttagaaaa
     2461 cacctgttgg tgtccggcag ttcacgaata tttccgtggt ggtttatctt cccaattctt
     2521 aaccaaaggt ggaatgccgt ttacgatgca ccgtatcaac ctgatcaaag gtatcgggcc
     2581 ggttttacaa attgccgaag gttggtctat cgacttgccg gaaaatgtac acgacatttt
     2641 aaacaaacgc gccaatgaaa cctggccgac cacttggttc gtacctcgct taaccggaaa
     2701 aggcgcattt accgatgtgt atagcgtaat ggcgaactgg ggtgcaaacc actgtgtggc
     2761 aaccttcgga cacgttgggg cagacttaat taccctcgcc tcaatgctcc gcattccggt
     2821 ttgtgtgcac aatgtggaag ataaagacgt attccgccca agtgcgtgga acggtttcgg
     2881 tcaagacaaa gaaggtcaag actaccgtgc ttgtgctaac ttcggaccat tatataaata
     2941 atacacaatc accctctccc cttgtgggag agggacagcc aagcaattcg ttcagaattg
     3001 aatggcaggg agagggctac aagcggtcgc ttttctctca aaatttacaa atccctctct
     3061 ctgattaaat tgctaaacgc aatttaatct atctctctaa aagggagata ttaggataag
     3121 taaaggagat aacaatgcca atttctctta ttttcgactg tggtgccacc aacctccgta
     3181 cgattgcgat taatcaagcg ggtgaaattg tggcagccca tcatctaccg aataacacac
     3241 aaccagatgt ggaaagccca gaatttcata tttgggatat tgaagagatc tggtcgaaat
     3301 taatgacctg tgccaaacag acgctttctc aactttcaga acaacaacgg caagagattg
     3361 ttgggatttc agtaaccacc tttggcgtgg acggtgcatt atttgacaaa aacggcaagc
     3421 agctttatcc gatcatttct tggaaatgcc cgagaaccct accgattatg gaaaaccttg
     3481 ccaattatct tgatgttgag gcgttatatc aacgtaatgg cgttggacat tatagtttca
     3541 acaccttatt caaattattg tggttaaaag agaacaaacc agaaatttat caacaagctg
     3601 agagtttctt attcatctca tctattttga cttaccttct tacaggcgtg caaacaaccg
     3661 accgcacaat ggcgggaacg tcaatgatga caaacatcga aaacgattcg tgggataaaa
     3721 cagttttaga tttattaggc ttaaccgaaa accattttcc tccaatgaaa agtgcaggag
     3781 aagttgtggg aacattaaaa ggagaaattt cccaagagtt aggtttaagc ggtcaaattc
     3841 cagtaatttc ttgcggacac gatactcaat ttgccatttt tggctcagga gctggctata
     3901 accaacctgt gttaagttca ggcacttggg aaattttaat ggttcgtacc ccaaaagcaa
     3961 aaccacaatg gcaattcgtt caaaacggct taaccattga gtttgatagc caatctggtt
     4021 atttcaaccc aggtgtgcag tgggtagctt caggtgtgat ggagtggttt ggcaaacgtt
     4081 tcttctctga tatagccaat actgaacatt actaccgcac aatgattgaa gaagcggcag
     4141 aagtgcctgc tggctcaaac ggtgtgaaat tagtcggcaa ttttgatggc acaacagcta
     4201 aaacaggttc aattatcggc ttatctatgc acatcactcg tggcgaaatt taccgtgcag
     4261 gcttggaata tatggctcat cgtctaaaag aagggttaga tgtattacaa gaagtcggtc
     4321 attttaatgc tgagagtttg atttgtgtgg gaggtggttc taaaaacgct ttatggaatc
     4381 aaattcgagc cgatgtctta aatagaccga ttgatgtagt ggatttccct gaaagtaccg
     4441 tattaggcgc ggcaatgttt acttttacag gtgctggtgt atttgaaaat ccaaatgcgg
     4501 ctcaacaggc aatgaagcca aatgtgaaac gggttgagcc atcgtcaaat agtcaatttt
     4561 ataaataaag tttctcccct ctctctgatt tgaggttcat tcagaacatc aaatcagaga
     4621 gagggtaaaa aaggagttca aaatgttaaa aggtattcac ccggcaattt ctccagattt
     4681 attaaaagtc ttagccgaaa tggggcacgg cgatgaatta gtgctttctg atgcacactt
     4741 ccctgctcac tctattcatc aaaacgtcat tcgtgcagat ggcttaagtg ttgccacctt
     4801 attagaaggc atttctgctc tgtttgaatt tgaccaatac gttgaagccc cacttgcaat
     4861 gatgcaagca gtaaaaggcg acacgctcga tccaagcgtt gaagagcgtt acctcaatgc
     4921 aattaaaaaa gtaaacggaa cagccccgaa aatagagcgt gtagaacgct tcgctttcta
     4981 tgatagagcc aaaaacgctt atgccgttgt cattacaggc gagttagcca aatacggcaa
     5041 cattattatc aaaaaaggcg taacaccggt ttaattacaa gcggttaaaa aagcagaatt
     5101 ttttacaaat ataaaattaa aaggagttca acaatggaca gaaaaatact ggcgagacaa
     5161 atcattgata cttgtcttga aatgacccga attgggttaa atcaaggtac agcaggcaat
     5221 gtgagcgtac gttataaaga cggtatgctc attacgccaa caggtacacc ttatgagcaa
     5281 atgaccgaag attctatcgt ctttgttgat ggcaacggca aacacgaaga gggaaaactc
     5341 ccttcaagtg agtggcagtt ccatttagcg gtttatgagg ctcgccctga attaaatgcg
     5401 gtagttcaca accacgctaa aaactgtgcc gcagtgtcta ttttaggtga acctatccct
     5461 gccattcact atatgatcgc ctgcaccggc actaatcaca ttccttgtgt accttatgcc
     5521 ccgttcggca ctcaccaatt agccgactat gtacgtgaag gcattaaaca cagcaaagca
     5581 attttactcg ctcaccacgg cttaatcacc gcagataaaa ccctcgaaaa agccctcggc
     5641 atcgcccacg aggtggaagt gatcgcagaa tggtatttga aactgctcgc tacaggaaaa
     5701 cctatcccaa cgctaaacaa agaacaaatg gatatcgtac tcggaaaatt taagtcctat
     5761 ggttcttggg tggaaagcga acaatagcct gccataaata acatacaagc ggtgatattt
     5821 cttaaaattt ttacaaacgg agtgcagtat gcaaaatgaa gtaatactca cgatgaaaaa
     5881 catcagtaaa tcctttgcgg gggtcaatgc gttaaaaggt gttgagctta cgctgcgtaa
     5941 gggcgaagtt cacgcattaa tgggcgaaaa cggtgcaggt aaatccacct tgatgaaatg
     6001 cttgctgggc gtatatcaag ccgatgaagg tgaaatcata tataaaggtc agcctgttcg
     6061 ctttgagtcg gtattagagg cacaaaaagc gggcattagt atgattttcc aagaactgaa
     6121 cctcattccc catttaacgg tggcagagaa tattttcttc gcccgtgagc cactcaaaca
     6181 cggtttagtg gataaagaca aaatggtgga agaatcggct aaattgctga atttctttga
     6241 gattgatgtt gatccaaacg atgaagtgag aatgttgtcg gtagccaaac aacagatggt
     6301 agaaattgcc aaagcccttt catttgatgt ggaagtactg attatggacg agccgacctc
     6361 cgctcttacc gaaaaagaga tcgataaatt atttgaattg gtcgatagac tgcgtgccaa
     6421 aggggtgagc attgtctata tttctcaccg aatggaagaa ttaaaacgta tctgtaacca
     6481 tattacgatt ttccgtgatg gcacctatgt atctaaccat aaattcaatg aaatcacgat
     6541 ggatgagatc attaccaaaa tggttgggcg ttcattggat aaccatttcc caccaaaaac
     6601 cgctgtggtg acaaacgaca ttatcctctc gattatgaat gctgaacgta agggagtgtt
     6661 tgaaccattg aactttgact tacgcaaagg agaaattctg ggcattaccg gcttggttgg
     6721 agcaaaacgt actgaactgg ctcgagccat cttcggagca gacccacttg atagcggtga
     6781 gatttttgtg cacgagaaca aagtcagcat taaagatccg agtgatgcaa ttaaagccgg
     6841 tatagcctat ttgtcggaag accgtaagct caatggtgtt gcagtaagaa tgtcgattcg
     6901 tgagaatatc acgatggcat ctatggataa agttgccaat caaataggtg tgatttctta
     6961 cgatgaagaa gaaaaagcct caaaaacttt catcgacaaa atggaaatca aaaccccaac
     7021 gattgagcag aaagttcaaa acttaagtgg tggtaaccaa caaaaagtgg taattggtaa
     7081 atggttattc cgtgaagcaa aagtgatgat ttttgatgag ccgactcggg gaattgatgt
     7141 cggagcaaaa tatgctatct atcaactgct cgatgagctt gctgccaatg gcgtgggtgt
     7201 tatcgtgatc tcttccgaat tgcctgaagt cttgggagtt tccgaccgca tcattgtaat
     7261 gcgtgaaggt agaatgacag gtatgctcga gactaaaaaa accaaccaag aagaaattat
     7321 gcattatgca actggtgtta aaaatatgtt tgctcgtgaa tatggggtgg aaaaatgaat
     7381 gaaaaacaaa aagaaatgtt aagaaaaatg gctgcattgg ctggcttagt actattaatc
     7441 atctttttca gcgtaaccaa tgaatacttc tttacctcca ataacattat gacagtaggg
     7501 ctacaaacct ctaccattgc gttaattggt attggggcaa cctgtgtgat cttaaccggt
     7561 ggaattgatt taagtaccgg ttcagtagtt gcactctccg gtgtggcagc tgcaatgatt
     7621 gtaaatgccg gtgtacccgt accactagga atgattttag ggattttggt cggcggtatt
     7681 tgtggcttaa tcaacggcat tttagtcacc agaatgaaat tgcctccgtt tattgctacc
     7741 ctcggtatga tgatggttgc ccgtggttta gcattgtatg ttaccaatgc cgcaccagtt
     7801 tccggaatgc ctgaatcctt tgccaatctc ggtaacggag cattatttaa aattgtggaa
     7861 gaaggggcaa acggcttgcc gaaagtggta tttgcaggta ttccttaccc tgtgattatt
     7921 atgatcttta ttaccgtact attcactttc gctctctcta aactgaaagt cggacgctat
     7981 ctttacgcaa ttggttctaa cgaagaagcc gcacgcttat ccggcattaa aaccaatatt
     8041 gtcaaaatct atgcctatgt tgccagtggc ttactctctg gtttaactgg cgttatcctt
     8101 gcctcccgcc tcgtcaccgc ccagccaaac ggtggggtct cttacgagct ggatgcgatt
     8161 gccagtgctg tggtgggcgg cacatcgctt atgggcggtg tgggtactat ccccggcaca
     8221 ctcatcgggt cattcattat cggggtactc cgtaatggtt tgaatatgaa tggcgtttct
     8281 tcatttgttc aaatgattgt catcgggctt gtgattatcg tggcggtctc tctcgaccag
     8341 ctccgccaat ccaaaaaagc cggtaaaaaa taatccactc ttaaaggaga attaaaatga
     8401 aaaaatcagc attatttact gcgaccctct ttggtttatc gaccttattt gcaggcagtg
     8461 caatggcaaa atctgatgaa atcgctgtga ttgtgaaatc tgccaactct accttctggc
     8521 aaaacgtgcg taaaggggct gaaactgccg gcaaagatat tggaggacaa tacaaagtca
     8581 ccttccaagg gccggaagcc gaaacagcga ttgacgccca agtgaatatg gtggacaacg
     8641 ccgtaaaccg tggcgtggca ggcatcgtac tggctgcctc agacccggta gcattagtgc
     8701 cggcggtgaa aaaagcttat gagagtggca ttccggtggt gcttatcgat tccggcatca
     8761 acagtgacgg caaatactac caatctttcc ttgccaccga caaccgtgca gcaggtaaat
     8821 tagcagcgga aaaactgctt gccaaagtca aaggcggcaa agtggcagtg atgagcttta
     8881 cccaaggggc agcatcagcg attgagcgta ccggtggttt tattgacgaa atcaaagcaa
     8941 aagccgatta caaactggtc ggcccgtact actccgattc ggatatgacc aaagcgttaa
     9001 accaaaccga agacgtatta ggttctaacc ctgatcttgc agcgatcttc ggggcgaacg
     9061 aaccgactgc ggtaggaatg gcacgagcgg tgaaacaaaa aggctttgcc ggcaaaattg
     9121 tagcggtggg ctttgatgga aactccgacc tacaaaactt cgtgcgtgac ggaacactag
     9181 acggcatcgt ggtgcaatct tcctaccaaa tgggctataa aggcgtggac accatcggca
     9241 agctgattaa aggcgagaaa gtcgaaaaag tgattgatac cggggtggtt tatgtcacga
     9301 aagaaaacat tgatagcgaa gaagcgaaag gtgttcttta ctaacattca agttaaacgg
     9361 ggtggggttg cccacccttt cagccgaaag gaagccaata tgtcaaatac ccttaccgat
     9421 aaagccttag tggtgattgc cgcacttggc ggtcgagaaa atattgtcga tgtttacgcc
     9481 tgtattaccc gcctacgtgt ggaggtgaaa aataccgaca ttgtggaatg ggataaaatt
     9541 aaatctgtcg gtgcgttagg cgttgtgacc tcaggctcag ttattcaatc tatttttggt
     9601 agcgatgccg aagcctaccg tgatgaaatc aaacgtattt tgaatattta gcctaagcac
     9661 actcacaaca aaagaatcgc aacaagcggt gaaattttta tcaaaatttg caaaaaaatg
     9721 acgtaatttg accgcttgca agttaatcga attgtttaac ttttaagaag gaaaatagta
     9781 tggcaaatcg tcttatcctc aatgaaacca gttaccacgg caaaggagca atccaaaata
     9841 ttgttcacga agtgaccagc cggagtttca aaaaagccct tgtggtaaca gacaaagacc
     9901 tgatcaaatt taacgttgcc caaaaagtca ccgccttgct tgatgccgca ggcttgcctt
     9961 atgagatttt cgatgaggtc aaagccaacc cggcagtcga tgtgatcaaa gcgggggtcg
    10021 caaaattcaa agcctccagt gccgattatt taattgcgat tggtggcggc tcaccgattg
    10081 atagtgccaa agcgattggt attatcatca ataaccctga gtttagcgat gtactttcat
    10141 tggaaggtgt cgccccaacc caccaaaaat gtgtgccgat tatcgccatt ccaactaccg
    10201 caggtacagc cgcagaagtc acgattaact atgtcattac cgatgaagcg aaaaaacgca
    10261 aatttgtgtg cgtggacgtt cacgatgtgc cggcagtggc gttagtcgat ccagatatga
    10321 tggaatctat gccgaaaagc ttggctgccg caaccggtat ggacgctctc acccacgcca
    10381 ttgaaggcta cattaccaaa gcggcgtggg aattaaccga tgctctacac cttaaagcga
    10441 ttgagctgat cggccgttca ttgcgtggtg cagtggagaa aaatccgaaa gatgtcgagg
    10501 caatggcatt gggacaatat gtggctggaa tgggcttctc caacgttggg cttggcgcgg
    10561 ttcacagtat ggcacacccg ctttctgcct attacgacac cccacacggc attgccaacg
    10621 cagtattact gccgtatgtg atggaattta ataaaaatta caccggcgaa aaataccgtg
    10681 aaattgcccg agcaatgggg gtaaaaggcg tagatgaaat gagccaagaa gagtaccgca
    10741 acgccgccat tgctgccgta caacagcttt cacaagatgt cggcattccg ccaaaactgc
    10801 atcaaatcgg cgttaaagaa gccgatttag cggcattatc ggtcgatgcc tttaatgatg
    10861 tctgcaccgg tggcaacccg agagattgta cggctgagga gctgttggag gtatatcgga
    10921 tcgcatacta agttctatct ttgttaaata gacaagcggt gattttttaa taaaaatttg
    10981 caatttctgt taaaaaaata ctgatagtca taatgcccga tttctcatat ttatggaaaa
    11041 atcgggcatt ttcgttgctt ttttatcgcc aagaaatgtg attttgttca catttatatc
    11101 tataaattaa caaaaataaa acaatttgtt tgcaaaggcg gttcagttac cgaatgatag
    11161 tcatcaactt ccactgtgga taaaaaagga gcaactcatg gtgaaacaac ataaaatgta
    11221 tattaatggt gaatttgtgc ctgcgttaga tggtcgcact ttagcagtct ataaccctgc
    11281 caccgaaaaa gctatctccg aagtccctcg tggcggagct gatgatgcca aaatcgctat
    11341 cgatgctgct gaagccgccc aagaagcttg ggaacgttta ccagcgattg aacgaggaaa
    11401 atatttacgt caaattgctg tggggattcg tgagcgtgcc gatgaaattg ctcgcactat
    11461 ttccgaagaa atgggtaaaa ctctgtcctt agcaaccgtt gaggtacatt ttaccgctga
    11521 ctacttagac tatatggcag aatgggcgag acgttatgaa ggggaaatta tccaaagtga
    11581 tcgcccaaat gaacatattt tcctatacaa aaaagcgatt ggcgtcacca ccggcatttt
    11641 accttggaac ttcccgttct tcctcattgc ccgtaaagcg gctccggcat tagtaacagg
    11701 taatactatt gtgattaaac cgagtgaaga tgcacctaat aatgcgattc tcttttcgga
    11761 aatcgtgcat caagtcggtt tacctaaggg ggtatttaat gtcgtcaccg gctatggcaa
    11821 tgaagtcggg ccggaacttt caggcaatga aaaaatcggt atggtttcct ttaccggtag
    11881 ccagtttgcc ggacaaaaag tgatggaagc cgccagcaag aatatcatta aagtcaattt
    11941 ggaattgggc ggaaaagcac cggctatcgt attagacgat gcagatcttg agcttgctgc
    12001 taccgctgta gtaaattctc gaatcatcaa ttcaggacag gtttgtaact gtgcagaacg
    12061 catttatgta cagagttcaa ttaaagagca atttgtccaa aaattggtag agaaaatgca
    12121 agcggtgaaa tatggtaatc cattagaaca acaagacatt gatatggggc cgatggtaaa
    12181 tgaaaaaggc ttgcataaag tgcaggaaat ggtgacacac gcactgcatc aaggaggtaa
    12241 tctggtatta ggtggtaacg tggttgaagg aacaggctac tactttgagc caactattat
    12301 cgacaatgta gataactcta tggatattat gcgtcacgaa atttttggtc cggtcattcc
    12361 ggttgcgaca tttgatacca ttgatgaagc gattcgctta gccaatgatt gtgaatatgg
    12421 cttaacctct tcggtttaca cgcaaaatat caataaagcg atgaaagtaa tttcccgctt
    12481 aaaattcgga gaaacttatg taaaccgtga aaactttgaa gcaatgcaag gctaccacgc
    12541 cggttggcgt aaatcgggta ttggcggtgc tgacggtaag cacggcttag aggaatacct
    12601 acaaactcag gtggtttatc tgcaatttga tgataaagta tagattcttc taaaaactcc
    12661 cacttatcaa aataagcggg agttttcttt taggttaacc ttgtatcaaa attgcaaaca
    12721 aaaatattct aatgttaagt aaatgtttaa taattattta tggttaactc tttttggcta
    12781 attaatttgc aatttaaatt aattgagtgc agaatgccat tagccttttt tgaaatcaca
    12841 ttccataaaa tggcttgatt aacacaacac aattatcact caaattagga ttttcattat
    12901 gagtattttc caacaaacca atccaaaccg ccgtcgttat gggctagctg tatttatcgg
    12961 gattattgcc ggtattattt cagcattcgt aaaatggggg gcagaacatc ctttcccacc
    13021 tcgtagccct atcgatctgt ttaccgctgc ttgcccgcaa cctgtgttag atgcaatgaa
    13081 tgccgcagca gaccaagtgg ctgccaaaac catcgcatta caagaatgtt cacgtgcatt
    13141 tttaaaccca ccacacgttt tcttacgtga ttatattggt atcgatccaa ctgaagcagc
    13201 atttaccttt gctgaccacg cgttcaactg gattggtgtc acccatatga ttttctcgtt
    13261 agtctttgcg attggttact gcattgtggc ggaaatcttc ccaaaaatta aattctggca
    13321 aggtatcggt gccggtatca tcgctaatat ttgtgttcac tacatcacct tcccggcatt
    13381 aggtttaaca ccaccggttg ctgaatggcc gttatatgaa cacatttctg aattagttgg
    13441 tcatattttc tggttctgga ccattgaggt gattcgtcgc gatttacgta accgtattac
    13501 gcgtgaacct gatgccgaag tgccgttaga tcaaccgttc cgttaattta aaattagctc
    13561 gatttataca aaagccgcaa tcacgttgcg gctttcttat tttacaagcg gtcaaatttt
    13621 catgaaaatt taccaaacaa aaagcacatt gtttcatgta gcaatgcgga gcttggcttt
    13681 ataagaaaaa tacaccaagt tggaacagtt tttcaatttc atcgatctgt ttcttatcgt
    13741 tcacaaaaat aatcacacgg tcattttctg caatcatggt ggatttgtgg gcgataataa
    13801 cttcttcgcc tcgcaccacc gccccaacaa ttgccccttg cggtagtttt aattcacgga
    13861 tttgtcgtcc aaccactttt gaagtggttg catcgccgtg agcgataatt tctaccgctc
    13921 ctgcaacccc aagtttgagt gaagaaactt gtaaaatatc gccttttcta acgtaactag
    13981 cgagagcaga aatagtagct tgttgtgggg aaatggcaat atcaatagtg ccaccttgaa
    14041 tcaggtgtaa ataggcaggg cgttgcacta aaataatcac ttttttcgcc ccaagccgtt
    14101 ttgccagcag ggcggacata atattcgctt catcatcact ggtgacggca aggaataaat
    14161 caatattctc aatatgctcc tcaaacagca actcttcatc ggaggcatca ccggtaagca
    14221 ccatcgtttt agatagtttt tctgctaatt tttcggctcg aaccggattg cgttcgataa
    14281 tttttacccg atactgatct tctaaatccc gagctaacga agagccgatg ctccctccac
    14341 cgacaatcat aatccgctta tgtgggcgat caagccgttg tagttcactc attactgctc
    14401 gaatatgttg ggttgcacag atgaaaaaga cttcatcacc tgcctcaata atagttgaac
    14461 cttgtggcac aatcgctttg tcttggcgga aaattgccac gacccgagca tcaatatgcg
    14521 gtaaatgatc acgcagggct gaaatcgggt aaccgaccaa aggcccaccg taataggctt
    14581 ttacattcac gatactgact aactcatcag caaaatgagt aatttgcaac gcccccggat
    14641 agtgaataag gcgtaaaata tcttctttga ctaaaatttc aggggcaata atatggtcaa
    14701 taggcaatac atcatcatta aacaaccgct ctcgttctct cacataatca gcactgcgaa
    14761 tacgggcaat tttggtcggc acattaaata aagtgtaagc aatttggcaa gcgatcatat
    14821 tcacttcatc actattagtt acagcaacta atagatcagc atcacctgca ccggcatcac
    14881 gcaaggtttg aggtgaagca tattcgcccc gaatcacctg taaatcgtgt ttatctttga
    14941 gcttgtctaa acgagttggg tcattatcca ccaagacaat atcattgtct tcactcacca
    15001 aattttctgc cagcgtagaa ccaacttgtc ctgcccctaa aataattact ttcattactc
    15061 tgctactttt tgtagttttg cgtagaagaa accatcacca ccgtttggtt gtgggaagaa
    15121 ctgtttttct aacacttttt cgccgttaaa atcgatttca agttgttttg cattcggtgt
    15181 atcttgtaaa aaccgttgaa tttgctcgct attttcttgc ggtaacaccg agcaagtggc
    15241 atataacaaa atgccgtttg gctttaacct ttgccataac gccttgagaa tctcaccctg
    15301 taatgtggct aattctgcaa tatcaccctc tttacgcaac catttaatat cagggtggcg
    15361 gcgaatgact ccggttgcgg aacaaggggc atcaagtaaa atgcggtcaa acagcacacc
    15421 ctcttcaagc cattcctcag gtttggaagc atcgccacaa attacctgtg caatctgccc
    15481 cagtcggact aagttttcac gcactcggct taaacggctc tcttcaatat ccaacgccat
    15541 aacctttgct ttcggtgctt tttctaaaat atgggtagtt ttgccacccg gtgcggcaca
    15601 ggcatctaaa acggtttcac cattttctgc cccgagcaac tccgctgacc attgtgcgtg
    15661 agcatcttgc acggttgccc aaccttgctc gaaatgtggc agttggttca catttaccgc
    15721 tctctccagc aataaagcac actttggcac gcaagcggtc ggattttctg aattttttgc
    15781 aaattcaggc tcaaccagct cgctaatcaa cgccgcataa tcattggtct tgatatgttg
    15841 ttgattgact cgaatccaca ttggtgggcg ttggttgttt gcttcaacaa tttctcgcca
    15901 gttcggatag gcttttttaa gtttattgac caaccattca gggtggagcg tttgccaatg
    15961 tttatctacc ttcgctaaga tttcttcttg ctctcgcaga aaacggcgta gcacaccgtt
    16021 agtcaaggct cggaagctat ccagttttag cgttttagtt gcattcacta cctcatcaac
    16081 cgcagcgtgt gccggcactc gcatataaag cagttggtat aaacccacta acagtaagca
    16141 atgcaccaaa cgggttttgc ctttcagcgg tttttcaact aataatttga tgatcgattc
    16201 caagcgaggc agcacacggc acactccgaa ggtgatttct tgcactaagg gtaaatcttt
    16261 tggttcaagc tgtttttgag cgtcaggaat caaggtggaa agtgatttac cttgatctaa
    16321 cacctgtaaa ataatggttg cacttattgc tctagaagaa agtgctttga acgattgttt
    16381 tttcataaat aaaaatgcca ttccgacaga atggcactat tgtaactgaa tgcgggatta
    16441 tcttaaaact aaaattggct tggtggtgtt gcgagccact ttaaccgtat tagagcttaa
    16501 gcccttcgca tttggtttgc tgcttgccag catcataatt aaatccaccg acttttcatc
    16561 ggcaatacgg caaatttctt cataaatcgt accatacgcc acaatgtgct gcacttttga
    16621 accttcagga aaatggtttt tggtaaattc gtgcaatttt tggtttgctt cagccaccac
    16681 ttctttatcg aaatttttcg gcaagaatgc agaaattaag ctgttatcca ccggctcaat
    16741 aatagacaca acccgataaa ccgcattcgg attttttgcc gtcatttgta atgccgtatc
    16801 taccacatat ttagcacttt ttaggtcggc taaatcaatc gcaataagta atttgttata
    16861 catatttatt ccgtaggggc aggtcctgtg cctgcccgaa tattaactaa aatagcggac
    16921 gggcacagga cccgtcccta catagcatat aaatactatg caataacaca ctgttttttc
    16981 actctacggc gttggtttgc cacaatacca aataccaaca atagagcagg aatgaagatc
    17041 caatctttag aaggagcatc ttgcggtacg gcaatgtagt gaatggtttg atcccagttt
    17101 aagcctgctt tagctgccgg agaatccatt tctaccatat caatcaccac ttttggtgtt
    17161 tctacgccat caactttgat tttttcatcg gtttgaatta gcgttaagcc taagtttttc
    17221 aaacgctctt cgccggttgc tccttccggt acaggtaatt gagcgtagaa ctcaatttct
    17281 ttaccgtaag ggtttaatcc ctctactttt aaagtaacat tttgacctac tttgcttgca
    17341 agcaactgtt cttcaaactg caccggctcg atatgacgtt cagacggata aattctgtcc
    17401 ataaagaagc ccggacggaa caaggcgaaa gcggctacaa ccagcaacgc cgtttcccac
    17461 catttgtttt tagtcacaat atattgcatt gtagcagagg taaaggcgag aaccccaaca
    17521 gttgcggtaa taaacacaac ccagccgtgc cccggataac gcagatcaat taataataaa
    17581 tcggtattaa aaataaataa gaacggtaaa atgacggttc ttaaactata tttaaatgcc
    17641 accataccgg tattaatcgg gctaccgcct gaaattgctg ccgcagcgaa cgaggctaaa
    17701 ccaacaggtg gagtcacatc tgccataatc ccaaaataga atacgaataa atgcaccgca
    17761 atcaacggca cgattaaccc gttttgacga ccgacttcca tgataaccgt tgccattaat
    17821 gatgacacca caatgtagtt tgcagttgtc ggtaagccca ttcccaaaat taagctgaat
    17881 acggctacca agatcaacat tagcacaatg ttgcccattg ataggagttc aatcacactt
    17941 gaaagctgaa ccccaaagcc cgttagtgcc acaacgccga caataatccc tgctgttgcg
    18001 gtagcgaggg cgataccggt catattacga ccgccagcct caaggctatc taccacatct
    18061 cgaacacctt gtttgataat ctctttggtt acgctctctt tacggaagaa attcagtaac
    18121 gggcgttggg ttaattgaat aaaaattaag gtaatggttc cccagaatgc ggataagccc
    18181 ggcgaaagca tttccaccat taagcaccaa agtagcacaa ccacaggaat aaggtaatgt
    18241 aaacctgcat ttacggttgg ttttcttttt ggtagagaaa caatttctga gtttggatcg
    18301 tccgcttcta aatcagggta gcttgccaca cggcgaatag ccagtagata ccataagcct
    18361 aagaaagcac agacaatcat aaacgcataa tcttctgcca catcacgaat ccaacctaag
    18421 ccgtagtaaa cgccaatcgc taatcctacg atcactaaaa ttgaagctac ggttcttagc
    18481 aagaagacta aaatcgggct tggctcttcg gctcttggta agccttgtaa attcatctta
    18541 caagcttcta aatgcacgat atacaccaac gcaatatacg aaattaacgc aggtaagaag
    18601 gcgtgagtaa tcagctggct atacggcata ttcacatatt cgatcatcaa gaacgctgca
    18661 gcccccatta ccggtggcat aatttgaccg tttactgatg aggcaacttc caccgcaccg
    18721 gctttttctt tggtaaagcc gacccgtttc atcattggaa tagtgaatgt acctgtcgtc
    18781 acgacgtttg caatcgaaga gcctgaaatc aagccggtta aagcggaaga aaccaccgcc
    18841 gcttttgccg gaccaccacg caaatgccct aaataggcaa aggcggtttt aataaagtag
    18901 ttacctgctc ctgctttatc gagcaacgcc ccaaataata cgaacaggaa cacatatttg
    18961 gtcgaaaccc caagggctac accaaacacg ccttcagtgg taatccattg ttggttgata
    19021 atttgagaaa gcgaacctga gcggtggctt acaatccaat ctgccgggaa atattgcccg
    19081 aagaagttat agatcaggaa tacaatcgca ataatcacaa gcggtaagcc aagactacgg
    19141 cgggtcgctt ccagcaccaa taaaatccct aaacagccgg cgataatatc ttgcgtattt
    19201 ggcgctccaa aacgtttcac caaaccttca tagaagaaaa tataatacaa cgctaaccca
    19261 gctcctacga tggcaaacac ccaatctatt ttaggaatat gatgtttagg cgagctggca
    19321 aaagcagggt aagataggaa cgccaagaac attgcaaagg ctaagtggat agaacgggct
    19381 ttggtgtcgt ccaccaccac attcaaatta atgcctgcgt gagtaagcca ttcttggaat
    19441 acaaacggca atggagaagc ataataaatt tggaacacag accaaagaat ggcgacatac
    19501 acaatggctt ttttcgcaag accggacggg gttcgccccc cactgtcatt ggaggcaacc
    19561 atatcttgta ggtcatcgta atcaacctta gattcaactg acataaagac tcctcaaaac
    19621 gcaagcggtc attttcttat taaattttac aaatttcctc aaaaaacaac cgcttgctcg
    19681 tgaaaacact gttgataagt tatcaattaa aggtgaaaat cgataactta tcaacagttt
    19741 caaaaaagca aaaaaccagc acgctaaaaa acgtgctgat tgaatcaaat tacagaaagg
    19801 aaatattact taatccaacc tttctcttta tagtaacgaa ttgcaccttc gtgtaacgga
    19861 gcagaaaggg cgtttttgat catctcttct tgttttaagt gttcaaacgc cggatgtaaa
    19921 cgtttgaaac ggtcgaagtt atcaaatacc gctttggtta cattgtacac tttatctgca
    19981 tccacatcgg cagaagtcac taacgttgca tatacaccga aggtttctgt cggctcatcc
    20041 gaacctttat ataaaccgcc cggaatcgta gctttggcat aatatgagtg atctgccact
    20101 aatttatcaa tttcagggcc ggttaccggc actaatttcg catcgcaaga agcggctgct
    20161 tcttttaacg caccattcgg gtgacctacg ttataagtga tggcatctaa gttgttatca
    20221 cacattacag atgccatttc tgccggtttc aattcagaag ccactttgaa atctttatcc
    20281 gtccagcctt ttgccgctaa aatcacgttc attgttgcac gagtaccgga acccgggtcg
    20341 cccacgttta cacgttttgc ttttaaatca tcgaacgatt taatgcctga atcggtacga
    20401 gccattactg taaacggttc cgggtgaagc gagaaaatgg cacgaatttt atcgtttttc
    20461 ttaccttcaa atgagcttga gccgttatag gcgtggtatt gccagtctga ttgtgcaatc
    20521 cccatatcca tttcttttgc tgcaatcgca tttaagtttg caaccgatgc ccctgttgaa
    20581 ggagcgttac attttaaacc tgtttttgct gaatcacggt ttactaattg gcaaatagat
    20641 tgacccacaa cataataaac accggtttga ccgcctgttc cgatagtcac aaatgtttca
    20701 gccgcttgaa cagatgctgt tcccatcaca aggcttgcaa ggaaagaaag tttgactaat
    20761 tttttcattt ttaactccta aaattaagga tcagaaaaca aagatttatt gttttgagcc
    20821 actgctcaca ctacaagaga tacaaaactt ctttgagttg catttgcctc ttagagcttg
    20881 tttttagcat agattttata attagtaaat ttattttttc gcataaaaaa atctatgcct
    20941 aatgccacaa gctaaaatgt ttcactatct cttaacaaat gcacatcgcc ttttcgtctt
    21001 aaaaaaccgc tacgatcaaa atattcaatt aattgtaccg tcaattttcg cccatactgc
    21061 aactcatctc gcaactggtt caccgaaatg ctgccgtttt gggcgataaa atctttaatt
    21121 aacgttgcaa attgcccgat ttgttcgctt aataaaaatc tatctttgac gattgggatt
    21181 aaatagccca atttcccgac tttatacagc aaattccgca tttgggtttc atcaatcgag
    21241 agctggcttg caatatccct cacccaaaga gcttgattgg ttgcctcaaa cagcggtcga
    21301 atttgttgcc aaatttgcaa ttcatcggcg ttcaattcga ttcgatgttc cggcaaatgt
    21361 aaccaaccac gactattgac caaggctttt tgctccacca aatcctcaat aaattgattt
    21421 gccaagtttt caggcaaatc caataacgct atgcgatata aacgagcttt ggtcacgccg
    21481 atttgatctt gatgttgcag gtggtattct gccatttttt ccaacacccg ttgctgggct
    21541 tgagctttaa aatccgaatt aaataaccat ttagacgaga catcaaaccc cagttttgca
    21601 atatcctctg caaaacattg ctccgcccat aacagcaagg ataaatccat cgctctgttt
    21661 tgcagataga gatcaaggcg tgtcgcaaag tcattacaag cggtggtttt tgctaaattt
    21721 tttaccaaag ctaaacgggc ttcggtacgt ttatgccgtt ttggtgagtg aatttccagc
    21781 acctccgctc cggctaacgt taggctgtca tcaccgctgc ggatgatcaa cttatcacca
    21841 acggcaatat gaagtggttc atctaaaatc acttctgcaa aaaattgctg atttttgacc
    21901 gcttgttgcc cctcaagcaa attcaatttg ccggtaatgt gcgaagcaaa atggtaaaga
    21961 tgcacaatgc tgttttcttt gaaggcttga ttggcagtga gttgaaccgt aatgcgatcg
    22021 gtggcaaatt tcggctcaag ctcggtaatc caatcgcctc gcttgatttc ctctttttcc
    22081 acgttagcga tatttaacgc caaacgttgc cctgccactc ccgtttccga aggcgtattt
    22141 tgggcgtgaa tcgctttgac ccgcactttt ttaccattcg acaaaaataa ctcagagcca
    22201 acgctcactt ttcccgccac cgttgtgccg gtaacgacca accctgctcc tttcacatta
    22261 aacacacggt caatcgcata acggaacggt ttatgggttt gggtatgttg ttgatttaat
    22321 tgaattaaat gtgcttttaa ttcttcaatc ccttgttgcg tttttgccga agtaacaaag
    22381 gtttttgctt ccgctaaaaa cggatagctt gttttcactt gctcaattaa gtggctgatt
    22441 tgagtttctt ccgcccgatc tgccttagta atcacaatca taatatgctg gaaattcagc
    22501 aggtggagaa tatccaaatg ctcttcggtt tgtggcttaa tcccttcttc ggcagaaatc
    22561 accaacaggg cgtgttgaat gccgccaagc cctgccagca tattagataa aaaacgctga
    22621 tgacccggca catcaataaa ccctaaaata tcgttctcaa tcggtaaata ggcatagccc
    22681 aaatcaatgg ttagcccacg tttttgttct tcgggcaaat gggcggtgtt agtgccggtt
    22741 aaggcttgta aaagcgatgt tttgccgtgg tcaacgtgac cggcggtgca gatgatcatt
    22801 gatagtcctt ataaaaatga gtaactattc tggcgagcag atttaaaatc tacaatatag
    22861 acattttcct gaccaatcag gaactttact tggtacttac cgtttaaaat gggaatttct
    22921 tttttcttgc gaagtcgata aacatcggca gtaaaggaaa gtttatccac ttcacttttt
    22981 attgcatcat aaaattgttc tgcaataatc gggttttggg attgttgtaa tatataatct
    23041 gcttgataaa acaattttat ttctgctttc tgtagccaaa caatattgta atcaaacttc
    23101 atcatttttc cgtgattccc aattttttgc gtaaatcttc catcacctga gcgtgggatt
    23161 tagtttcaat taagccattt tctaattgat gtaataaatc aagttcatca ttagtataaa
    23221 aactttgtgg cttatctgtg cgtaattttg ctaaatcttg tgcgagtatg agttccatat
    23281 ttccccctta caaacttaga ttattcaata ttgtaacctg ataaaactaa agttcaagga
    23341 gtgtatttaa ggcgataacc gctctttttt ccactcatta ttttccaacc aataatgaat
    23401 gcggtcgtgt agccggctac ttctgccttg ccagagttca atactgtcgg gaatcagaat
    23461 atagccaccc caatgcggtg ggcgaggcac tgaaagtgga tatttcaatg caaattgagc
    23521 tgattttagc aacaaagcct tgtagttttc gataggctga ctctgctcgc tcgcccaagc
    23581 ccccaaacgg ctggtgtaag gacgagagtc aaaataggca tcggattctg cctctggaat
    23641 ttttgctatt ttcccttcaa tccgcacttg acgttgtaat tctgcccaaa agaaggttaa
    23701 acatccaaaa ggattatcgg caatttccca ccctttacgg ctttgataat tggtaaagaa
    23761 cacaaagcct tgtgaattta cctctttcaa cagcaccatt cggctacttg gtcgcccgtt
    23821 tgctgcaacg gtagcaatat tcattgctgt cggctcattc actttggcat tgattgcctc
    23881 actcaaccat tgttcaaatt gggtgattgg gtttgagtga caatctcgga ttgaaagcac
    23941 ttttttggtg taatcttctc gaatgtggtg cagatccata aggattcctt tatcttattc
    24001 taaataatcg gacaggcaca gtctgcccta ccaaaattaa tattccaaca tctcaatcaa
    24061 cttatcaaac tccgcgaccg agcgtaaatc taaccaaaat ttctgctgag caaaacgccc
    24121 gataatcggg cttgggtagg ttttaaattg ttgttccaat gcaattaaat cgctctgttt
    24181 ttcagcggaa atagtcactg ccaccgaagg taaggtttct gtgggtaacg caccgctgcc
    24241 gatttgagcg aggcttagct caatttgcaa aatataagca gaatttaacc gcttgtgtag
    24301 tgcctgtttt aatcgctctg ctttgtgttg caaggtttca agcggttgag tgagtaaatg
    24361 aagagtcggc aagttatcgg ttaattgctc cggaaataag tagtggcgta gcgttgcctc
    24421 aagtgccgat aaaatcactt tatcgcaacg tagcacccgt tttagcgggt gttgttgcag
    24481 ttggctaatc atcgcttggc taccgacaat aatgccggct tgcggcccgc ctaataattt
    24541 atcgccagag aaggaaacca aatctacccc agccgctact ttttgctgaa cctttggctc
    24601 agcaggcaaa ttaagagctt gcatatcagt tagcgaacca ctgcctaagt cggtaatcac
    24661 aggcaggtta aactctttac cgagagccac caattcctct tccgacaccg aactggtgaa
    24721 cccctcaatg tggtagttac tggtgtgaac tttcattaaa aaggcggtat tttcggtgat
    24781 cgcgttgcga taatccttta aatgagtgcg attagtcgta ccaacttcca ccaatttgca
    24841 accggcttga gccataatat ccggaatgcg gaatgccccg ccaatttcca ccagctcgcc
    24901 acgggaaacg atgacttcct tgccttgtgc gaaggttgct aacatcaaca acaccgctgc
    24961 cgcattatta ttcacaatgc aagcggcctc cgctccggta agtatttgca acaactcgga
    25021 aatgtagtta tctcggtgcg agcgcttgcc tgcttcaata tcaaattcca acgccacatt
    25081 gtttcgcatt gcgttggttg ctgcctgtat cgccttttcc gaccacaacc cacgccctaa
    25141 gttggtgtgt aacaccgtac cggttaagtt gaacacggaa cggattttca cctcactcaa
    25201 cgcttgcact ttttgttcca gccttataaa aaacaggttt tcatcggcaa taaaatccgg
    25261 caaggcttgc tgttgggaaa taaattgacg tgcttgagta agcaaactcc tagcttgttc
    25321 agccacgctg gaatatgcaa atttttggca taattcgacc gcttgtggct ttttcaacaa
    25381 gaggtcgagc gagggaattt ggcgaaatag ttgttgcata atgtgaatga ttgagagaat
    25441 attttggaca attctaataa ataaagtaca atattgccaa tttttcggaa gtgcgtcatc
    25501 tccggtgagg tggcaggact tcaaatcctg ttgaggacgc cagcgttctc gggtgggttc
    25561 aactcccatg cacttccgcc acatttcaaa agccgttaat ctttaacggc tttttgcatt
    25621 tctgccacat tctctctttc cgttttgata aaaaatgaga cttagctcac atttttttat
    25681 ttttctgttt gtagtaaaaa tttattaaat tataattatt tggagtattt tttcacaaac
    25741 aaaatctagt ccattgacta ccttttgaac ataaaaaagg aactgttatg tcaacactat
    25801 ctcgtgattc tattttaagt caaattcaaa acgggctgat tgcctcctgc caaccggttg
    25861 atgacggccc catggataaa cctgaaattg tcgccgcaat ggcagcagcc tctgtgattg
    25921 gtggtgctaa aggcattcgc attgaaggtg tcgataattt aaaagccgct cgtgcggcag
    25981 tgaatgtgcc gattatcggc attgtaaaac gtgatttgcc agattcccct gtgcgtatta
    26041 cgccattttt agaagatatt gatgccttag ccgaagccgg tgccgatatt attgcggtgg
    26101 acggcacatt ccgcacccgc ccggtcagca ttgaagaggc ggtaaaacgc attcacgaaa
    26161 aaggttgctt ggcaatggcg gattgctcca cccttgaaga aggtttacat tgccaacaat
    26221 taggctttga tattgtgggt agtacaatgt ctggctacac cggtggcgaa atgcctgatg
    26281 agccggacta tcaattagtg aaagatttaa aagctgccgg ctgtaatgtt atggcggaag
    26341 gtcgctacaa cacgcctgaa ctggcaaaaa cggcgattga aatcggggcg gattacgtta
    26401 ccgttggatc ggcattgacc cgcttagagc atattgtgag ctggtttgcc gactctgtaa
    26461 aatcggctca aaaataggag ctgcttatgc gttgtttagc aatagacatc ggtggcacga
    26521 aaattgccac ggcaattgtg caacacaatc aagtgtcaca acgccaacaa attcagaccc
    26581 cgactgataa accacaagct gatcaggcag gcagtttgca tcaagcgatt ggtgagataa
    26641 tgcaacatta tcaagggcaa tttgattttg tggcagttgc ctcaacaggc attatcaata
    26701 aaggggtgct taccgcatta aatcctaaaa atttaggcgg attggcagaa tttccgttga
    26761 aacaaagcat tgaaaaacat accgataagc cgattgcatt attaaatgac gtgcaagcgg
    26821 cggtgtgtgc cgaatattta aatgaagacc aacaagcggt caaaaatttt gtatttatta
    26881 ccgtttccac cggcgtaggc ggcggcatta ttttaaacgg cgaactgcaa atcggcagta
    26941 acggcattgc aggacatatc gggcatactc tagccgatcc gaacgggcct ctctgtggtt
    27001 gtggacgagt cggctgtgtc gaagcagtcg cagcagggcg tgcaatagag gcagtttcca
    27061 gccaatggga aaagccttgt tcaccgaaag aggtgttcga gcgattccgc caaggcaacc
    27121 cacaagcggt cgaattagta caaaaatctg caaaagcgat tgctaattta attgcagatt
    27181 taaaaatcag tttagatata caaaaagtgg tgttaggtgg cagtgtgggc ttagcggaag
    27241 ggtatttacc gcaggtgtcc aactatttag ctgaaatgcc gagcgtatat cattgcgtat
    27301 tggaaaatgc tctatccggg caagatgccg gcttaatcgg tgcggcttgg tgggcggaaa
    27361 accaacttaa tcaaggtttt actctttaac aaattctaac tccggagatc caaatgaaaa
    27421 acttaaaagg tatttttagt gcgttactcg tctctttcaa cgaagacggc accatcaacg
    27481 aaaaaggctt acgccaaatt atccgccaca acatcgacaa aatgaaagtg gacggtttat
    27541 atgtcggcgg ttcaaccggt gaaaacttta tgctttctac cgaagagaaa aaagaaattt
    27601 tccgcattgc caaagacgaa gcgaaagatg aaatcgccct tatcgcccaa gtcggtagcg
    27661 taaacttaaa agaggcggta gaactgggta aatatgccac agaattaggc tacgacagct
    27721 tatctgcggt cacaccgttc tactacaaat tcagcttccc ggaaatcaaa aatttctacg
    27781 aaaccattat tcgtgaaacc ggcaacaaaa tgattgttta ctccattccg ttcttaaccg
    27841 gcgtaaacat cggtgtgagc caattcgctg aattatttga aaacgaaaaa atcatcggtg
    27901 taaaattcac tgccggcgat ttctacctgt tagagcgttt acgcaaagcg ttcccgaacc
    27961 acttaatcta cgcaggtttc gatgaaatga tgctaccggc aacggtatta ggtgtggacg
    28021 gtgcaatcgg ctcaaccttc aacgtaaacg gtattcgtgc aagacaaatc tttgaattag
    28081 cccaacaagg caaaatcaaa gaagcatttg aaatccaaaa tgtaaccaac gatttaatcg
    28141 aaggcatttt aggcaacggt ttataccaaa ccatcaaagg cttattggag ttagaaggtg
    28201 tgcaagcagg ttactgccgt gagccgatga cgaaagaaca aactccggca caaaaagaag
    28261 tgaccaaaca gttaaaagct aaattcttgt aatttaagtt gcaaaaggct aaacgaaaat
    28321 caccgcttgt agtaacaagc ggtgattttt tctcaacgac ttgcaattaa tgaagccatt
    28381 ctgctttttc taccacggtg taacgtgtca ccattatatt ttaatcgcac tttttcttgg
    28441 cgagtatttt ctgatttcaa ctctctacct atatcataaa accctgtact ccagatattt
    28501 tgagtaatat ccgcttttac aataatatca ttgaagccgt tggtctgttt gttatccatt
    28561 tgcaatacca agtttgtgtt tccgttttgg tttctttatc atctaaaata gaccaaaaag
    28621 tcatcgggta atcaaaaaca agttttaact tttctttttc cggcacaaat aacatcaaat
    28681 gatcatttgc agaatactca ggagcacttg gaccacgagc agcattatta aacctcacgc
    28741 cgaaagctct tactttgtcg tttagaatat aacgggcggt atcaatttta agactatctg
    28801 cattcacatc gatagaggca tcgatctcca tatcctgctc ccacgattgc aatatcgcat
    28861 tatcattcac acgagcaaca aaaagcgtcc acttaggtgt gttttcgtcg ttttgataat
    28921 tttctttgct gtatttaggc tctattaccg cataactcac taaggtttcc gttgaattgt
    28981 taggagctgt tttacaggca gaagctaaag tacgagcaga aagtttctct tgagaaatct
    29041 taaagtaatg agcaataatt tgatgttgtt gctcagcaca aacctgtgtg ttattacctt
    29101 catctgcttg agttgcaagc gtaagtaaaa gaactaagag gagtatcttt ttcatataga
    29161 tttatccgta tagaaagata actcattcta tggggtactg actctttttg catagagaga
    29221 aagaaaaaaa tttggtcgga aaaataacgg cgagcctagc gaaaacaagg gttcgccgta
    29281 attttatggg ggaagctatg taaaaaacaa aatgagcagg attagaaaaa aatgagcagt
    29341 ttttgcgata ttttttgcat aggtttgatc ggttttaaaa ctattttaaa tctgttttaa
    29401 actaaagagt gtccgatgtg gactacctgc ccgatgattt ggaggttttg agcttcttcg
    29461 gcggtaatct gtattgggcg gtaggactcg ttatcgctaa ttaattcaat atagtcccat
    29521 tcttttctaa tccgtttaac ccatacgctt tccccattct gcacaagata aatcttatca
    29581 tcaccacgag gctctcgttt gctgaaatct accagcattt ggtcactgtc tgcaatggta
    29641 gggtgcattg atgttccatt tgcccaaaac acgccgcagt tgtgggcttt tacgccgagg
    29701 ctttgcagca ggctgtcggc gtaaggttct tgcccgtctg gcttcgttac gccctcgtta
    29761 aagctgccaa agcctgctga aacgttgatt gttctgaagc tgttaatcat tgaaacaata
    29821 tcatcagcca ttttttctag tcgctcaaac tctcttgcca caatactggt attctctgat
    29881 tgtggtttgc tttccttacc tgttgccagc cattcaaggc tcacatttga cacctctgct
    29941 atttttacaa gatttgaacg agatggatct gcctctcctt ttacccacct agatagtgat
    30001 gcttgggcta cccccactgc tcttgcaaac tcactgtaat tgtccttaaa gctatttttt
    30061 gcaatccatt tcattctttc tgagaagctc tcatcgtaaa tgtttggttt actcatcttt
    30121 tacgtttcca ttaataaagt tttactcgta aaacatactc ataaaccatt gatttttaag
    30181 ttatttatga ataaagcaaa aatattttag atgtttttat gttttacggt tgatttgttt
    30241 aaagttttac ggttaaatac acgcatcaaa tagataaaaa gaggtgtatc gaatgagtgt
    30301 attaaacgat gttaaaaaaa ccgcacagag agattggcat aaagccgata ttcttgcgga
    30361 acttcgtaaa aaaggttggt cacttcgttc tttggctaaa gcaggcaatg ttagccataa
    30421 cacgctgaag tctgttttag acaagcctta ccccaaaatg gaacgcttag ttgcaaatgc
    30481 cataggggtt gcccctgaag tgatttgggc tgggcgaaca gcagaacgca ttgaacgtaa
    30541 tcggcgacca actttaacta ataagtttta atcataaatg atctttaacg taaaagatat
    30601 aggagaagaa catttatgag cgaattaagt ttaaaaacgc actattcagt ggctgaattg
    30661 ttaagtttta agttatctag cctaccaagt gctcataaaa atgtgcttga gaaagcaata
    30721 agggaaaact ggcaatctca aaaacgcaaa ggcagaggcg gcggggttga atatgaatta
    30781 atcagtttac ccaccgaagt ccaacaggaa atccgcacca agttactcaa acttcttcct
    30841 gctgaaatca gcaaaggcga attgagtgta gtgcgacaaa acattgattt ggagcagata
    30901 accgataaac aactttctac ggcagatgct cgcattatgg tggtgcggtg gttcttgatg
    30961 caggaagtgc agttggggct aagccgcaca aaaacgctag accaagtcat tgcagcggtg
    31021 gcaagcagtg aaattcctgc tgaaatttgc aaagcgatta tggcgggcaa tagtaaagcc
    31081 ggtggaaagt taaagctatc taaacgcacc ttgcatagtt gggtgctggc gtatgaggca
    31141 ggcgaaaatt cagcggaacg gttaaaacag atgataccgc tgaaaacaca aaaacgtgcc
    31201 gtgcccgagc ggtgtggttg gttgcaagcc tttctgccgt tttatcaaac ctttagcaat
    31261 gtggcactca cacaggctta tgctcaattt gcaatgcagt atgagggcga agatttacct
    31321 acagagagcc aagttcggta tgccttgaag cagttgcccg attatgtggt gcaacaaggg
    31381 cgg
//
LOCUS       DANMBQ010000012        30501 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.012, whole genome shotgun sequence.
ACCESSION   DANMBQ010000012 DANMBQ010000000
VERSION     DANMBQ010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 30501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30501
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.012"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            43..549
                     /locus_tag="PXE92_000531"
     CDS             43..549
                     /locus_tag="PXE92_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDL5759810.1"
                     /translation="MAMSNIGLDKEIAKKLADELNGLLATYQVFYTNVRGYHWNVRGV
                     NFFELHAKFEEIYDDLVTKVDEIAERILTLGHTPQNAFSQYLTKSQIQEHIGVSAAQE
                     CLRGTLNGFKTLLGQQREILALANDANDEGTASQMSDYIKEQEKLVWMFTAACAECSD
                     YAQGCSCN"
     gene            608..1321
                     /locus_tag="PXE92_000532"
     CDS             608..1321
                     /locus_tag="PXE92_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HDL5759811.1"
                     /translation="MAMSQGFQFKQFFIRHDRCAMKVNTDGILLGAIAHIKDCQNILD
                     LGIGSGLVALMLAQRTDDCCHITALELEPNAYQQAVENAQNSAWANRISVLQGDVMQQ
                     AFEQKFDLIVSNPPYFADSLAARTTERDLARSISHYSHLNWLAKAKPWLAENGKITLI
                     LPIAAAEKLVDQSEQIGLYCVEQWLIFTKSGKLAKRSIVSFSLNKQKREHKELIIYDL
                     DNCYTTEFKRLTQDFYLNF"
     gene            complement(1432..2436)
                     /locus_tag="PXE92_000533"
     CDS             complement(1432..2436)
                     /locus_tag="PXE92_000533"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005651072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDL5759812.1"
                     /translation="MAFNLKNRHLLSLVNHTEREIRFLLDLARDLKRAKYAGTEQQKL
                     KGKNIALIFEKTSTRTRCAFEVAAYDQGAHVTYIDPNSSQIGHKESMKDTARVLGRMY
                     DAIQYRGFKQSVVQELADYAGVPVFNGLTDEFHPTQMLADVLTMIENCEKPLSQISYV
                     YIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEDAFVKMCEKFAAESGARMTVTED
                     IETAIKGVDFVHTDVWVSMGEPLESWTERIDLLMPYRVTPELMQATDNPKVKFMHCLP
                     AFHNSETKVGKEIAEKYPALANGIEVTEEVFESPMNVAFEQAENRMHTIKAVMVASLA
                     "
     gene            complement(2524..3363)
                     /locus_tag="PXE92_000534"
     CDS             complement(2524..3363)
                     /locus_tag="PXE92_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HDL5759813.1"
                     /translation="MQSYPYLLVNVFATSHFGGNPLAVFYEADGLTDLQMQLIARQFN
                     LSEVVFIQSSTDSQAVKKLKIFTPDYEMPFAGHPTVGAAFVLHSAFDFPTTYRLQTNA
                     GLVAIQHQHNVTTFALTNGVNLENTPLSRAECASILGLNVADIASEPCYVNTGVEQLL
                     VELASQQAVEKCKINANLAEKAFLKDSVYVWCREGNEAKVRLFFQSQGSIVEDPGTGS
                     AAANLGGWHIAQGKIPIQLQISQGDEIQRPNRLLLKVDQNGKIFVGGEVILVGKGEFY
                     LPE"
     gene            3553..4887
                     /locus_tag="PXE92_000535"
     CDS             3553..4887
                     /locus_tag="PXE92_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5759814.1"
                     /translation="MLYAEFLLLLAFLYAGSRYGGIGLGVVSGIGLFVEVFFLGMPLS
                     APPISVMLVILAVVTCASILEAAGGLKFMLQVAERILRSNPKRITFLGPLVTYLMTLM
                     LGTGHSVYSIMPIIGDIALKNKIRPERPMAAASVASQLGITGSPLSAAVAYYLTEIVK
                     LPGFEGVTLLNVVGVTITATFCGVIAMSLYSLRRGKELEDDPEYQRRMQDPELRKQIE
                     QTSATSLDEKLPASAKNSVYLFLAAIATIVIIAMIPAIKPTVAATGKVAGMDQIIQIV
                     MLTFGGLILILTKTDPKKVPNGIVFKSGMVATIAIFGIAWMSDTYFTHAMPAFKEGVT
                     EMVRAQPWTFAFALFAVSVVVNSQAVTAKMLLPVGIAMGLPAPLLVGLMPATYAYFFI
                     PNYPSDIATVNFDVTGTTKIGKYYFNHSFMAPGLVGVITACIVGIAVANVLI"
     gene            complement(4967..5377)
                     /locus_tag="PXE92_000536"
     CDS             complement(4967..5377)
                     /locus_tag="PXE92_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL5759815.1"
                     /translation="MNSTLTNLQPLAFLITRVVAGYMFLLHGTAKFFEFPMSMTNGNG
                     SVPLASIYGVGGILEIVGGIFFILGLFTRQTAFILSGMMAYAFFIAHGAQGNVLLPLL
                     NGGELAGVYSVLFLTYIFIGGGKYSLDAKLFNKA"
     gene            complement(5500..6177)
                     /locus_tag="PXE92_000537"
     CDS             complement(5500..6177)
                     /locus_tag="PXE92_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL5759816.1"
                     /translation="MNLFGFRCFHCNHPLAIGVQGICSHCQKLLKPTPYCRHCGMSAV
                     EFRNACGYCLKNEPKWHKLVRVNEYRAPLSHWVHQFKFQQQYWWDQALARQLLLAIKQ
                     AQREQVLSLPEVIMPVPLFWHRHWKRGFNQSELLCDWLSKWLQIPLDTQSLQRVRATV
                     SQRELTAAERRKNLRGAFFYQPLKAYKRVAIVDDVLTTGSTLNVICAELLKAGVVEIQ
                     VWVLARA"
     gene            6295..7107
                     /locus_tag="PXE92_000538"
     CDS             6295..7107
                     /locus_tag="PXE92_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL5759817.1"
                     /translation="MKSLQKPIKIVFFDIDDTLYVKHKAYIPKSITEQVLPRLKAKGI
                     IPAIATGRNHGCFPEALKPYLNPEIGFELFVTINGQYNFYKDQIISDYSLSREQIERI
                     IEKANALGILYAFITPMTIAVSETNPIVHEAVLPITPNYLIDPHYYEKEKIVQMLLFY
                     TEEQKQAVENSGIFANDLKEARWHPNAVDILRKENSKARGIQDVLATLNIEIESAMAF
                     GDGINDLEMLPTVGVGVAMGNGVPELKAVADFITKPLEEDGILYALETLEVI"
     gene            complement(7155..7424)
                     /locus_tag="PXE92_000539"
     CDS             complement(7155..7424)
                     /locus_tag="PXE92_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5759818.1"
                     /translation="MGLLYLLLLNTLIGYGSYGEALNHWDTSKVSIVTTMLPIFTMIF
                     SNLSYYFYPHIFAKPDMNWISYLGALVVVSGAILAIAGDKLFRRN"
     gene            complement(7397..8074)
                     /locus_tag="PXE92_000540"
     CDS             complement(7397..8074)
                     /locus_tag="PXE92_000540"
                     /inference="COORDINATES: protein motif:HMM:NF013088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5759819.1"
                     /translation="MKQRPLLGFSLALTAAMTWGTLPIAAQQVLKVIDAQTLVWVRFV
                     VASVGLLLILGFAKRLPKLTACSKKELGLILLGVCGLSANFFLFAEALHYVSPTINQV
                     LWQLAPFSMILLGVLLFKEKFGLFQKIGFVLLIAGLVAFFNDKFAEILQLNTYALGVL
                     LSAGASLIWVLYGVAQKLLLAKFNSQQVLFIIYIGCSLLMLPFASPAQLGNLEDGFLW
                     GCFIYCC"
     gene            complement(8176..8433)
                     /gene="rpmA"
                     /locus_tag="PXE92_000541"
     CDS             complement(8176..8433)
                     /gene="rpmA"
                     /locus_tag="PXE92_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007369914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDL5759820.1"
                     /translation="MATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSIIAD"
     gene            complement(8454..8765)
                     /gene="rplU"
                     /locus_tag="PXE92_000542"
     CDS             complement(8454..8765)
                     /gene="rplU"
                     /locus_tag="PXE92_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDL5759821.1"
                     /translation="MYAVFQSGGKQHRVSEGQVVRLEKLELATGEKVEFDSVLMVVNG
                     EDVKIGAPVVAGAKVVAEVVAQGRGEKVKIVKFRRRKHSRKQQGHRQWFTEVKITGIQ
                     A"
     gene            9043..10041
                     /gene="ispB"
                     /locus_tag="PXE92_000543"
     CDS             9043..10041
                     /gene="ispB"
                     /locus_tag="PXE92_000543"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HDL5759822.1"
                     /translation="MAVQLFSLEQIQALANEDMQAVNAEILAQLNSEVLLINQLGHYI
                     IAGGGKRIRPLIAVLAARALGYRGKKHITAAAFIEFVHTATLLHDDVVDESDMRRGRP
                     TANAHFGNAASVLVGDFIYTRSFQMMTDLDSLRVLKVMSAATNALAEGEVQQLMNVND
                     PNTTEANYMRVIYNKTARLFEAATQCVAIAADASEEIETALKNYGCYLGTAFQLIDDI
                     LDYSAQSESLGKNVGDDFVEGKPTLPLLHAMHAADKAGKTTQAELIRNAIENGGELEQ
                     IPQVLAIMQEHQSLDYAMQKAREEAQKAVDSLGVLPESEYKQALVSLAYLSVDRSY"
     gene            10144..10890
                     /locus_tag="PXE92_000544"
     CDS             10144..10890
                     /locus_tag="PXE92_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDL5759823.1"
                     /translation="MTEQNQRPQEHIESVRARRRAQNQKKGPNAPFVREKLTLPNGHN
                     KLLLHSCCAPCSGEVMEAIHASGIEFTIYFYNPNIHPLKEYLIRKEENIRFAEKWGIP
                     FIDLDDDYENDRKEWFKKAKGMEWEPERGIRCTMCFDMRFEKAAEYAHNNGFPVFTSC
                     LGISRWKDMNQINDCGHRAAAKFDDVVYWDYNWRKGGGSQRMIEISKRERFYQQEYCG
                     CVYSLRDSNKWRLETGRQRIEIGKLYYSPD"
     gene            11307..12242
                     /gene="fabD"
                     /locus_tag="PXE92_000545"
     CDS             11307..12242
                     /gene="fabD"
                     /locus_tag="PXE92_000545"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDL5759824.1"
                     /translation="MSKFAMVFPGQGSQAVGMLADLAPQYPIVEETFKQASDVLGYDL
                     WDLVQNGTAEELGQTHRTQPALLASSVALFRIWQQKFPEQKPAVMAGHSLGEYSALVC
                     AGVLDFQDAIKLVELRGRAMQEAVPAGSGAMFAIIGLDNESIIKACEQAASETGEIVS
                     AVNFNSPGQVVIAGTKAAAEKAGELCKAAGAKRALPLAVSVPSHCALMKPAAEKLAEA
                     LQNIELNQPLVPVINNVDVAVETDADTIRNALVRQLYSPVRWTETVEKMAQDGITTLY
                     EIGPNKVLTGLAGRIVKELSAKAVNDVASFEAVEA"
     gene            12259..12723
                     /locus_tag="PXE92_000546"
     CDS             12259..12723
                     /locus_tag="PXE92_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759825.1"
                     /translation="MSKETLFMLISALIALVILPLAYTVGIAKETLGGNMGMLSIAAG
                     CSFLAYFLSLNPKIRHAFIGGSAITAAAIQAWVLYGVLLSENDPKSAVVLFQIYLFSS
                     LGPLFFSAIWAFTRPRWIYPKQGSAVKYALFGGLTTVINYLITLFIFYILTL"
     gene            12744..13466
                     /gene="fabG"
                     /locus_tag="PXE92_000547"
     CDS             12744..13466
                     /gene="fabG"
                     /locus_tag="PXE92_000547"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL5759826.1"
                     /translation="MSKIALVTGATRGIGKAIAEELVAKGYIVVGTATSEKGAESISA
                     YLGENGKGLVLNVADAESIESVLKQIKETFGDVDVLVNNAGITRDGLLMRMKDEDWFD
                     IIQTNLTSVYRLSKAVLRPMMKKGGRIITIGSVVGSMGNPGQTNYCAAKAGLVGFSKS
                     LAKEVASRGITVNVVAPGFIATDMTDELTEDQKNAILSQIPAGELGSPQDIAKAVAFL
                     ASDDARYINGETIHVNGGLYMS"
     gene            13585..14883
                     /gene="brnQ"
                     /locus_tag="PXE92_000548"
     CDS             13585..14883
                     /gene="brnQ"
                     /locus_tag="PXE92_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HDL5759827.1"
                     /translation="MTRNTLVVGFLLFAIFFGAGNLIFPPKLGYESSTEFFSAISGFV
                     LTGVGLPLLGIIVSAFYNGGYKSALDKIHPWFSLAFLTSIYLAIGPFFAGPRTAATAY
                     EMAIMPFLGDSSQVSMLIFTLIYFAFTLWLALNPNKMVDRIGAILTPILLITIIGLVI
                     RAGFILDTDPQITTPNTNEQSYFFKGMVDGYLTMDALASLAYSVIVLNAIRGKGVSQA
                     ALQRQTVSAGLVAAVALAVIYISLGWIGNNMPISANTLSMLSERKLDLGTYILNTVTT
                     QAFGELGRSVLGVIVSLACLTTAVGLAVSVSEYFNEIFPKISYKVYAILFTVISFTVA
                     NQGLKEVISKSIPVLLVLYPIAMTVILMLLINLVIKLPLSAQRLSLLLVTIVAIASVA
                     GVGFTENLPLKSYSMEWLPFAIIGAIIGAIIHPLTGRKHK"
     gene            14929..15753
                     /gene="mutM"
                     /locus_tag="PXE92_000549"
     CDS             14929..15753
                     /gene="mutM"
                     /locus_tag="PXE92_000549"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HDL5759828.1"
                     /translation="MPELPEVETSVRGVSPYLVGQTIEQIIVRQPKLRWTVSPELSQM
                     AGAKITAVERRAKYLIIRTDKGDILVHLGMSGSLGILQERQQKEIGKHDHVDLITQNG
                     TILRYNDPRKFGCWLWAEKAEDHELLRKLGPEPLSNDFTADYLFAKSRKKTTACKTFI
                     MTNEVVVGVGNIYACESLFMAGIHPELAAQNLTKKQCERLVKTIKEVLTKAIIQGGTT
                     LKDFIQPDGKPGYFAQVLQVYGRKGETCNDCGKPIETKVIGQRNTYFCPKCQRLPK"
     gene            complement(15836..16270)
                     /gene="dtd"
                     /locus_tag="PXE92_000550"
     CDS             complement(15836..16270)
                     /gene="dtd"
                     /locus_tag="PXE92_000550"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HDL5759829.1"
                     /translation="MIGLIQRVKFAKVEVEGQVVGEIASGLLVLLGVEKDDDEAKADK
                     LLEKVLNYRVFSDSEGKMNLNVQQAGGSLLVVSQFTLAADTNKGLRPSFSKGASPVDA
                     ERLYAYFHQQAATKIHTQTGQFAADMQVSLQNDGPVTFWLQV"
     gene            complement(16245..17090)
                     /locus_tag="PXE92_000551"
     CDS             complement(16245..17090)
                     /locus_tag="PXE92_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
                     /protein_id="HDL5759830.1"
                     /translation="MLNRLWRFIKLFAKRYNENNIAISAGYLTYSTMLAIVPFIVVLF
                     SIFTFFPIFHEANEQLKAFIYDNFAPSASEMVSEYIELFVSNAKQMGLVSFIGLFVVT
                     IMLIKSIDEALNTIWHDNRQRPMWFSFLLYFLILLFGPLLAGASIAISTYVMSLSIFN
                     GNGALSLGQHLLELMPFLLIWLLFTLVYKFIPIRKVKFQHAAIGALMAAIFFTLGKKA
                     FIWYITAFPSYQAIYGALAVLPIMLLWIQLSWQVVLLGGQFAAVLDEMETDKGSINDR
                     LNSAG"
     gene            complement(17092..18330)
                     /gene="proA"
                     /locus_tag="PXE92_000552"
     CDS             complement(17092..18330)
                     /gene="proA"
                     /locus_tag="PXE92_000552"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HDL5759831.1"
                     /translation="MQMIELAQQAKQASFELAQFGNLQKNQALLTIADSLEQRAEEIL
                     YANAKDIEFAQAQGISLAIIDRLLLNEDRLKDIANDVRNVAKLADPVGQVMDGGVLDS
                     GLKIERQRVPLGVILTIYEARPNVTIDVASLCLKTGNAVILRGGKETKFTNAVLVDVV
                     QDALEKAGLPKLAVQAVTDPDRALLLELLKLDRYIDMVIPRGGAGLHQFCKENSTIPV
                     IVGGIGVCHLFVEKTADQEKSLEVIANAKTQRPSTCNTLETLLVEKAIAVEFLPKLVA
                     KMQQLGVTIHSNDLQKIEGIEPLDQAKLSQEWLSLDLNVVVVNDLQQAVEHIRHYGSQ
                     HSEGILTSDYQLARQFVQQVDAAAVYINASTRFTDGGEFGLGAEVAVSTQKLHARGPM
                     GLEALTTYKWVCEGDYLVRG"
     gene            18614..20497
                     /gene="mutL"
                     /locus_tag="PXE92_000553"
     CDS             18614..20497
                     /gene="mutL"
                     /locus_tag="PXE92_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HDL5759832.1"
                     /translation="MINTTPKQLIHILPPQLANQIAAGEVVERPASVVKELVENSLDA
                     GANTIQIDIEKGGSQLIRIRDNGCGISKQDLPLALARHATSKISSLEDLEAILSLGFR
                     GEALASISSVSRLTLTSRTAEQTEAWQAYAQGREMAVEIQPASHPIGTTIEVANLFFN
                     TPARRKFLRTDKTEFAHIDEVVRRIALAKPNISFSLSHNGKIVRQYRKVQDNSVEQQQ
                     KRVAAICGDEFIQHSTYIDRQHGDLHLHGWVGSPALARLQNDLCYSYVNGRMMRDKTI
                     NHAIRQAYGDSIASGYYPAFVIFLDLDPTMVDVNVHPAKHEVRFHQGRLVHDFILQGV
                     LNSLQQTQPTLELRNEVNEPLPSYVQDTNRQAAGQNIFVSQTAPQAAEFTQKNASRSS
                     YTPKFERSNSVSSSAQKWYKELVGGDLHQTTPTIKTQSTLVEPKTEPQTEHKTEAVSQ
                     KITQIAPLASHHSQALAIVKNQAVLIKEEENFYLLPLATLAELKLKLQLEKGQSQALL
                     IPLNLSLDQQQTERWQQTKEELTKLGFSISEKQWQAQTRLTVLSVPQAVREQNLQQLL
                     FALFNQTQAVNLAEFFAKKCEKPTACTLSDVIALLSEIELYANGKKELEGIRKEVDFS
                     KFL"
     gene            complement(20516..20785)
                     /locus_tag="PXE92_000554"
     CDS             complement(20516..20785)
                     /locus_tag="PXE92_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL5759833.1"
                     /translation="MREIEYSNAFKRDYKKCAVESLSSSLIEALYFLINDKPLPEKYC
                     DHALTGEWKGFRDCHIQPDLVLIYRKVEDDKLELLRIGSHSHLFG"
     gene            complement(20772..21038)
                     /locus_tag="PXE92_000555"
     CDS             complement(20772..21038)
                     /locus_tag="PXE92_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL5759834.1"
                     /translation="MANSALVSVRISPEIKEQASEVLAGIGLTVSDVMRMTLAKIATE
                     KRFQFDYQPNFETAEVLRAVKNGEEKLHSANSIADLMEQLNARD"
     gene            21478..22431
                     /gene="miaA"
                     /locus_tag="PXE92_000556"
     CDS             21478..22431
                     /gene="miaA"
                     /locus_tag="PXE92_000556"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDL5759835.1"
                     /translation="MNKKPLALFLMGPTASGKTDLAIALRQELPVEVISVDSALIYKG
                     MDIGTAKPSKEELALAPHRLIDILDPAESYSAMNFHADALREMADITSQGKIPLLVGG
                     TMLYYKALLEGLSPLPSADPAIRAEIESRAAQHGWATLHQELVKIDPIAGARINPNDS
                     QRINRALEVFYITGKTMTELTAQQGEALPYNILQFAIAPQDRAVLHQRIEQRFHKMIE
                     LGFEEEVKRLFLRKDLHINLPSIRCVGYRQMWEYLQGDISLDEAIFKGICATRQLAKR
                     QITWLRGWQGELTWLDSLAPTSSKAKMVEKIDHYLKNCDNI"
     gene            22500..22772
                     /gene="hfq"
                     /locus_tag="PXE92_000557"
     CDS             22500..22772
                     /gene="hfq"
                     /locus_tag="PXE92_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HDL5759836.1"
                     /translation="MAKGQSLQDPYLNALRRERIPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPARALSHNNNNQAQHAQPAAEVTEQAE"
     gene            22792..24177
                     /gene="hflX"
                     /locus_tag="PXE92_000558"
     CDS             22792..24177
                     /gene="hflX"
                     /locus_tag="PXE92_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HDL5759837.1"
                     /translation="MLNESLPNSEENSAFGFALSEASQTTEAASPTDPENQDKAILVH
                     LYLGQHKDVENLLEFKTLAESAGVEVLATLTTSRQSSHIKYYVGQGKAEGIAEAVERL
                     GATVVLVNHQLSPAQTRNLQSLCGCRVVDRTGLILDIFAQRARSHEGKLQVELAQLRH
                     LSTRLVRRVTNQDQQKGGAVGLRGPGETQLETDRRLIKVRIQQLLNRLEKVSKQRNQN
                     RKTRQKADIPTVSLVGYTNAGKSTLFNAITQAGVYAADQLFATLDPTLRRIQVQDVGT
                     TILADTVGFIRFLPHDLVSAFKSTLQETTEATLLLHVIDGSDERKNENIDAVNQVLDE
                     IGALDIPTLLVFNKIDKLEGVEPHIERNADGTPVAVYLSAQENSGIELLFQAIQERLR
                     SNLVCENLLLPVTAGAIYAQFKAENCIKTEHFNEFGERIISIEINEVQWNKWVKQFPD
                     LAEYIELAKWG"
     gene            complement(24399..30470)
                     /locus_tag="PXE92_000559"
     CDS             complement(24399..30470)
                     /locus_tag="PXE92_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5759838.1"
                     /translation="MNKIFKVIFNQTTQKMEVVSELARSQGKAASSTDKRGTIKLAAA
                     SILGGATLISGMAAFMLSATPAEAAVIIDRIEVQQKAPKKVVNGGIDIYTNTSLATDS
                     ITNPYNYFNPGSLSYADRTKLQESNNSVNKEKDSRLLYKSNTTSAIVIGHNAVALDNN
                     RKSRGKPKASGIAIGDYSYSGGGLSIAIGSFSRTASIGSVALGTSARAEGFNSFAAMR
                     QSAAIADYSTAIGSTSWANATASFAIGASATALGDRSFAIGSGTPQTVDGSYGHENRR
                     SIYDGQNNTLAFGTDAFSIGTKAKTNGNHSFAIGTNAWSGGFKLENSNISELGQVINP
                     DTAKVANNAFALGTNTRANSNDTLAFSTNASATGDGSIAFGVNSNTTGIGAIAFGNAS
                     KAWKSNAISIGWNANSHAEKVISIGSHSNASKDGAMAIGDTANSSGNNSVAIGYSANV
                     SKANATAVGTRANITHEGGTAIGFEAKSKGNYATAIAYNSTAKGKNSIAAGVNSTVSG
                     IRAAALGYNNTVSGKDTFVLGSNVTVKTKGSVILGSDSTEATATKEDTATVGTLKYSS
                     FAGDENVVDGDYVSVGNATNARQIKFVAPGKIASNSTDAINGSQLYAVADTLVKTGFN
                     ITADHSGLGGGAKEDNVKLGETVKYTSTDKNVVTTVTNNTIDFGLSDNISVGGKPGKD
                     GSVGVKGADGKDGVTIKPEAIVFHGVDGVNGKDGKDGKASIKVEKGAKGLDGNDGKDG
                     ESKTRIVYEKPNGDKEEVATLNDGLKFGANDGKVHDAKLNTQVDIKGATTNTDWAKFD
                     AGKNIMTQVVGNTITVALAKDLAGLDSATFGTQGDSTVINKDGVTIAKKDPNDATKSN
                     VTLTEDGLSNGGNQITNVDSGLKGKDGQPVKLTEAAGDVLNNAVNVGDLKNTVTETVT
                     EVTTDAFGLKDENNKEFKQNLGTTAKIIGDGNVKTNVVEKDGGHALEVSLVNNITVGK
                     DGEPGKVGIAGKDGKDAIALDGKDGAITVGRPGKDGIDGTIGVNGKDGSAVVLNGKDG
                     SIGLNGTNGKDGLTIKGTEGKPGLVGKDGLPGKDGVTRIQYQPTDGNGDPIGEPEQVA
                     TLNDGLHFKGDDATLVSKKLNETLEIIGGADKDKLTANNIGVNSKDGKLSVQLAKDLK
                     DLNSATFKPQDGENGQEGKGPTTVVNNNGVTITPKDGTDGKAVKLTEDGLDNGGNQIV
                     NVKSGIDGLAGKDGINGKDGKPITSVNDLTDDQLKEVGTNAANINDVVNASNDIIEKG
                     FSIAADNGETDHVKLGETVKYTSKDKNIITTVSDNVIDFTLNNDFTIGGPGKDGSIGV
                     KGADGTVGVTLNGKDGSIGLTGPKGADGKDGASATISVKDGAKGLDGNDGKDGESKTR
                     IVYEKPDGTTEEVATLNDGLRFVGDDGKEIVKKLNETLKISGGDTDLTNLSDNNIGVV
                     NNNGALTVKLAKDIDLTKDGSVTIGDTTVNNDGLTIKDGPSVTKAGINAGDKKIINVQ
                     DGEISATSKDAVNGSQLYQVQEVANAGWNLTANGKDKGNVKPGATVDLNNKDGNIIIT
                     KEGNNVTFGLKNNLTIGGKDGKDGQIGIAGKDGKDGVTIKGDGTITAGRDGKDGVDGS
                     IGATGKDGASVVLNGKDGSIGLTGPKGADGKDGASANIAVKDGAEGVDGTNGKDGLPG
                     ENGKTRIVYETKDKDGKTVTEQVATLNDGLIFSGNNEDVKNRQKLNTEVKVKGEGVDK
                     TASENFKSASGNINVKANGTDTLEVQLAKAIDLTEDGSVTTGDTTVNNNGLTIKDGPS
                     VTKGGIDAKGTKITNVKDGDVTATSKDVVSGSQLYNAMQNTGWYLTVDGNVAETSEKG
                     AQRVNNNGKVAVSGGKNIVVSRKGSTVEVATSSNLEFDSVKVGGTTISSTVAKDGVNE
                     LNIAGSKNAQTRITNVAPGVKGTDAVNVNQLKGAENRLNNRISNVDKDLRAGIAGALA
                     AGNLYHVTQPGKSMVSAGVGAYRGQGAIAVGYSRLSDNGKVGIKFSVNSNSRGDTGAA
                     ASVGYQW"
BASE COUNT         8907 a         6787 c         5979 g         8828 t
ORIGIN      
        1 ctaatttaat tttttaagat taacaattaa gaggagcata ttatggcaat gtcaaatatc
       61 ggtttagata aagaaatcgc aaaaaaatta gcagatgagt taaatggttt attagctact
      121 taccaagtgt tttacactaa tgtacgtggc taccattgga atgtacgtgg tgtgaacttc
      181 tttgaattac atgcaaaatt tgaagaaatc tacgatgatt tagtgacaaa agtagatgaa
      241 attgcagaac gtattttaac cttaggtcac acacctcaaa atgcgttcag ccaatattta
      301 accaagtcac aaattcaaga acatattggt gtttcagctg cacaagaatg tttacgtggt
      361 actttaaatg gtttcaaaac attactggga caacaacgtg aaattcttgc tctagcaaat
      421 gatgcaaacg atgaaggtac tgcttctcaa atgagtgatt acatcaaaga acaagaaaaa
      481 ttagtatgga tgttcactgc agcttgtgct gaatgttcag actacgcaca aggttgttct
      541 tgtaactaag ttgcaataat ataattaacc cccgataatg aaagattatc gggggttact
      601 ttttcagata gctatgtcgc aaggatttca atttaaacag ttttttattc ggcacgacag
      661 atgtgcaatg aaagtcaata cagatggtat tctattggga gcgattgctc acataaaaga
      721 ttgtcagaat attttagatc tgggtatagg ttctggttta gtagcactta tgcttgctca
      781 gagaacagat gattgttgtc acattactgc gttggaactt gaaccaaatg cctaccaaca
      841 agcggtcgaa aatgcccaaa attctgcatg ggcaaatcgg atttccgttt tgcaaggtga
      901 tgtgatgcag caggcatttg aacagaaatt tgacttgatt gttagtaacc caccttattt
      961 tgcagattca cttgcagctc gaaccacaga gagagattta gctcgctcaa ttagccatta
     1021 cagccacttg aattggctgg caaaagcaaa accatggtta gcagagaacg ggaaaattac
     1081 actgatttta cctatagcag ctgcagaaaa attagttgac caaagtgaac aaattggatt
     1141 gtattgtgtt gaacaatggt taatttttac caagagcggc aaattggcta aacgcagtat
     1201 agtgagtttt agtttaaaca agcaaaagcg tgaacataaa gagctgatca tctatgatct
     1261 agataattgt tacactactg agtttaaaag acttacccaa gatttttatt tgaattttta
     1321 atttactccc cgggttagtg ttttccacaa atcttcttca gctacgatga tctagcctta
     1381 agctaaaaag cagattacca cccaagataa tccgcttttt agacttagct attatgccaa
     1441 acttgctacc attaccgctt taatagtgtg cattcgattt tctgcttgct cgaatgccac
     1501 attcattggc gattcaaaca cctcttcggt tacttcaatg ccgtttgcca gtgccggata
     1561 tttttcggcg atctctttac cgactttagt ttcactgttg tggaacgccg gtaagcagtg
     1621 cataaatttc actttcgggt tgtcggttgc ttgcattaat tcaggcgtta ctcggtaagg
     1681 cattaataaa tctatacgtt cagtccagct ctctagcggt tcacccattg aaacccaaac
     1741 atcagtatgc acaaaatcga cacctttaat tgcagtctca atatcttcgg ttaccgtcat
     1801 tcttgccccc gattcagctg caaatttttc acacattttc acgaatgcat cttccggtaa
     1861 taaggctttc ggggcacaaa ttcgcacgtc catccccaat ttcgccccaa tcaacaggag
     1921 tgaattaccc atattattgc gagcatcgcc gatatagaca taactgattt ggctaagcgg
     1981 tttttcgcaa ttttcgatca tcgttagcac gtcagccaac atttgggttg ggtggaattc
     2041 atcggttaag ccgttaaaca ccggcacgcc ggcataatcg gcaagctctt gtactaccga
     2101 ttgtttaaag ccgcgatatt gaatcgcatc atacattctg cctagcactc gggcggtatc
     2161 tttcattgat tctttatgcc cgatttgcga ggagttcggg tcaatatagg taacgtgagc
     2221 cccttgatcg taagctgcta cttcaaaggc acaacgagta cgggtcgagg ttttctcaaa
     2281 aattaaggca atatttttgc cctttaattt ttgctgctca gtgccggcat atttcgcccg
     2341 ttttaaatct cttgctaaat ccaacaaaaa gcgaatttca cgctcagtgt ggtttactaa
     2401 actgagtaaa tgtctgtttt ttaagttaaa tgccattttg tttctccctg taaacattaa
     2461 aatttatttt atgcaaaata attgcataaa aattcactta tagcaaacag aatttgctta
     2521 ccctcattcg ggtaaataaa actcgccttt gccgactaaa ataacctctc cgccaacaaa
     2581 aatcttcccg ttttgatcga cttttaataa caggcgattc ggccgttgaa tttcatcacc
     2641 ttgtgagatc tgaagctgga ttggtatttt gccttgtgca atgtgccaac cgcctaaatt
     2701 tgccgctgcc gaaccggtgc cggggtcttc gacaatcgaa ccttgcgatt gaaaaaacag
     2761 tcgcactttc gcctcatttc cctcacgaca ccaaacatat acactgtctt tcaaaaatgc
     2821 tttttcagcc agatttgcat ttattttgca cttttcgacc gcttgttgag aagctaactc
     2881 aaccaataac tgctccacgc cggtgtttac ataacaaggc tcggacgcaa tatccgcaac
     2941 attcagcccc aatattgagg cacattctgc acggcttagc ggtgtgtttt ccaggttcac
     3001 accattggtt aaagcaaaag tagtcacatt atgttgatgt tgaatcgcta ccaatccggc
     3061 attagtttgc aagcgatagg ttgttggaaa atcaaaggcg gaatgcaaca caaaagccgc
     3121 tccaacagtt gggtggccgg cgaacggcat ttcataatca ggcgtaaaaa ttttgagttt
     3181 tttgaccgct tgtgaatcgg tggaagattg aataaatacc acttcagaaa ggttaaattg
     3241 gcgagcaata agttgcattt gtaagtcggt taatccgtcc gcttcataaa atactgcaag
     3301 cgggttgccg ccaaaatggc ttgttgcaaa cacattcacc agcaaataag gatagctctg
     3361 catttatcac tccttacata aacttaaagc cacattgggc gaaaattcta ccattttggt
     3421 ggcgaatcgt aaaattggaa aatttatcgg tatccctctt tagagttaac tatttttgat
     3481 ttatctcaaa gttttaaaaa aaagattagg tcatacttct ttctagtgat tattttttaa
     3541 tttgaggttc ttatgcttta tgcagaattt ttacttttat tagccttttt atatgcaggt
     3601 agccgttacg gtggcatcgg tttaggtgtg gtttccggca tcggcttatt tgttgaagtg
     3661 ttcttcttag gaatgccgct ttccgctccg ccaattagcg tgatgctcgt gattttggct
     3721 gtagttactt gtgcctccat tctagaagcc gctggcggtt tgaaatttat gttgcaagtt
     3781 gccgaacgca ttttgcgtag caacccaaaa cgtattacct ttcttggccc acttgtcact
     3841 tatctgatga ccttaatgct cggcacaggg cattcggttt actctattat gccgattatc
     3901 ggtgatattg ccttaaaaaa taaaattcgc ccggaacgcc cgatggcagc agcctctgtt
     3961 gcttcacaat taggtattac cggtagccca ctttctgctg cagttgccta ttacttaacc
     4021 gaaatcgtta aattaccggg ctttgaaggg gtgactttat tgaatgtagt cggcgtaacc
     4081 atcaccgcaa ccttctgtgg tgtgattgcg atgtcattat atagcttacg tcgtggtaaa
     4141 gagttggaag acgatcctga gtatcaacgc cgtatgcaag accctgagct acgcaaacaa
     4201 atcgagcaaa cgagtgcaac gtctttagac gaaaaactac cggcaagtgc gaaaaactcg
     4261 gtttatctgt tcctagccgc tattgcaacc attgtgatta ttgcaatgat tccggctatt
     4321 aaaccaacgg ttgctgctac aggaaaagtt gccggtatgg atcaaatcat tcaaatcgtg
     4381 atgctaactt tcgggggttt aatcttaatt ttaactaaaa ccgacccgaa aaaagtacca
     4441 aacggcatcg ttttcaaatc cggtatggta gcaaccattg cgattttcgg gattgcttgg
     4501 atgagtgata cttacttcac ccatgcaatg ccagcgttca aagaaggggt aacagaaatg
     4561 gttcgagccc aaccttggac attcgccttc gccttgtttg cggtatctgt agtagtaaac
     4621 agccaagccg taaccgcaaa aatgttatta ccggtaggca ttgcaatggg cttgcctgct
     4681 ccattattag ttggtttaat gccggcaact tatgcttact tctttattcc gaattatccg
     4741 tctgatatcg caaccgttaa ctttgacgta accggtacaa ctaaaatcgg taaatattac
     4801 ttcaaccaca gctttatggc tccgggttta gttggcgtaa ttactgcctg tattgtcggt
     4861 atcgccgttg caaatgtgct aatttaattt taacaaaaaa acaagcggtc agattaagta
     4921 aattttttac caaatctgac cgcttgatta tttactgcaa aaccaattag gctttgttaa
     4981 agagttttgc atctaacgag tattttccgc caccgataaa aatataggtt aagaataata
     5041 ccgaatacac gcctgctaat tcaccgccgt ttaataaagg taatagcaca ttgccttgag
     5101 ctccgtgagc aataaagaac gcgtatgcca tcatacctga aaggataaac gctgtttggc
     5161 gggtaaatag acctaaaata aagaaaattc cgcccacaat ttccaaaata ccgcctacac
     5221 cataaatgga ggcaaggggt acactgccgt ttccgttggt catcgacatt ggaaattcaa
     5281 aaaatttcgc tgtgccgtgt aataaaaaca tataaccggc aacaacacgg gtgattaaaa
     5341 acgctaaagg ttgtaaattt gttaaagtag agttcatttg ctttccttaa aataaattgt
     5401 gatataaagg tcaattgatt gaggcaggca ttctatttta aaaacctata cttcacaatc
     5461 cagccgtcat gaaatagatt atttaccatt aataaacaat taggctctcg ctaacaccca
     5521 aacctgaatt tctactactc cagctttgag taactcggca caaattacat ttaaggtgga
     5581 acctgtggtg agcacatcat caacaatcgc cactcgttta taggctttta acggttgata
     5641 gaaaaatgcc ccacgcagat ttttccgccg ttcagcagcg gtcaattctc tttgtgagac
     5701 ggttgctctc acacgttgta aactctgggt atccagcgga atctgtaacc acttcgataa
     5761 ccaatcacac aataattcgc tttgattaaa ccctcttttc caatgtctgt gccaaaaaag
     5821 tggtacaggc ataatcactt caggcaagct cagaacctgt tccctttgag cttgtttgat
     5881 tgccagcagc aattgtcggg caagggcttg atcccaccaa tattgctgct ggaacttaaa
     5941 ttgatgtacc caatgtgaaa gtggcgctcg gtattcattt accctcacta atttatgcca
     6001 cttcggttca tttttcaaac aatagccaca agcgtttcga aactccaccg cactcattcc
     6061 acaatgacga caataagggg ttggttttag caatttttgg caatggctgc aaatgccttg
     6121 cacgccaata gcgagtggat gattacaatg aaagcaacgg aagccgaata aattcacatt
     6181 tcctcctttt atttgcagat tatcaaattt agccttattt tttccggcta tttttgtgac
     6241 atcgctcgaa aaaagagtaa aatctcatta tcagtaaata aaaaggaaac cgagatgaaa
     6301 tccctccaaa aaccgatcaa aattgtcttt ttcgatattg atgacaccct ctatgtaaaa
     6361 cataaagcct atattccaaa atcaattacc gagcaggtat tacctcgttt aaaagccaaa
     6421 ggcattattc cggccattgc caccggcaga aatcacggct gttttcctga agctctcaaa
     6481 ccttatttaa accctgaaat cggttttgag ctgtttgtta ccattaacgg gcaatataat
     6541 ttctataaag atcaaataat tagtgattat tcgttaagcc gtgagcaaat tgaacgtatt
     6601 atcgaaaaag cgaatgcttt gggtattctg tatgccttta ttacgccaat gacgattgca
     6661 gtttccgaaa ccaatccgat tgtgcacgaa gcggttttac cgatcacacc gaattatttg
     6721 atcgatccac actactacga aaaagagaaa attgtgcaaa tgttactgtt ctacaccgaa
     6781 gagcagaaac aagcggtcga aaatagtggc atttttgcaa atgatttaaa agaggctcgc
     6841 tggcacccca atgcggtaga tattctgcga aaagaaaatt cgaaagctcg tggcattcaa
     6901 gatgtattag caaccttgaa tattgagatt gaaagtgcga tggcatttgg cgatggtatt
     6961 aacgacttgg aaatgctccc gaccgtaggt gttggtgtgg caatgggtaa tggcgtgccg
     7021 gaattaaaag cggtggcaga tttcatcacc aagccgcttg aggaagacgg cattctatac
     7081 gctcttgaaa ctcttgaggt gatttaaaag caagcggttg taagtttttc tccatttaca
     7141 accgcttgta gtttctaatt acgcctaaat agcttatcgc ctgcaatcgc taaaatcgcc
     7201 ccactgacga ccaccaacgc cccaagataa ctgatccaat tcatatccgg cttggcaaaa
     7261 atatgcggat aaaaatagta gctaaggttg gaaaagatca tcgtaaaaat cggcaacatc
     7321 gtggttacaa tgctaacctt tgaagtatcc caatgattca acgcctcacc gtatgaaccg
     7381 tagccaatta aggtgttcaa cagcaataaa taaagcaacc ccacagaaaa ccatcctcaa
     7441 gattgcctaa ctgtgccggt gaggcaaacg gtaacatcag cagagaacag ccgatgtaaa
     7501 taataaacag cacttgctga gagttaaatt tcgctaataa taatttttga gccacgccgt
     7561 atagcaccca aatcaagctg gctccggcac tcaataacac tccgagagcg taggtgttga
     7621 gctgtaaaat ttcagcaaat ttatcgttaa aaaatgcgac aagccctgca atcaataaca
     7681 caaatccaat cttttgaaac aagccgaact tttccttaaa caataatacg cctagtagaa
     7741 tcatcgaaaa tggagctaac tgccacaata cttggttaat ggtgggcgaa acatagtgta
     7801 gagcctctgc aaacaaaaag aaatttgccg acagaccaca cacccctaac aaaattaaac
     7861 cgagttcttt tttgctacaa gcggtcaatt tgggtaaacg ttttgcaaat cctagaatca
     7921 gcaatagccc tactgatgcc acaacgaacc taacccaaac taaagtttgg gcatctatca
     7981 ctttcaatac ttgctgggcg gcaatcggta gcgttcccca ggtcattgct gcggttaatg
     8041 caagtgaaaa gccaagtaag gggcgttgtt tcatcgtgga aattcctttt tctattctat
     8101 gtttctatat tttagaaaga ttgagataca aaaaaacccc gccattggcg aggtctctta
     8161 ttgattttga aatgattagt cagcaatgat gcttacatat ttacggcttt tctcgccttt
     8221 cacttcaaat ttaactttac cgtcagcagt tgcaaataaa gtgtggtctt tacccatacc
     8281 tacatttgaa cctgcgtgga atttagtacc acgttgacga acgataatgc tacctgctaa
     8341 tacagattca ccaccgaaac gtttaacacc aaggcgttta gcttcagaat cacgaccgtt
     8401 acgagttgaa ccaccagctt ttttagttgc catcttctag atctcctctg aaattatgct
     8461 tgaatcccag tgattttcac ttctgtgaac cactgacgat gaccttgttg tttacggctg
     8521 tgtttacgac gacggaactt aacgatttta actttctcgc cacgaccttg tgctacaact
     8581 tcagccacta cttttgcacc tgctacaacc ggtgcaccga ttttaacatc ttcaccgtta
     8641 acgaccatta acactgagtc aaattcaact ttctcaccag ttgcaagttc aagtttttct
     8701 aaacgaacta cttgaccttc acttactcgg tgttgtttgc cgccactttg gaaaactgcg
     8761 tacatattta ctccgctatg tgccaactgc ttttgctttt aggcactaaa ttaattcata
     8821 aaaatagggt tgcaattcta cggaaaaaga ttcgaaagag caagagcgat tttgagaatt
     8881 ttttgaaatt tgcaaaaaat ggtaaaaata ctaccgcttg tttcaactgc gactaaaaaa
     8941 caatagactg ctccgatttt acaacaaaat cataattctt ttttgaacac aggctaaatt
     9001 aaggtagaat ctactcaatt ttcgtcttac tttatggatt cgatggctgt gcaacttttt
     9061 tctttagaac aaattcaagc ccttgcgaat gaagatatgc aagcggtaaa tgccgaaatt
     9121 ttagctcaac ttaattccga agtgctactg attaaccagc tcggacatta tatcatcgca
     9181 ggcggtggga aacgtattcg cccgttaatt gcggtgcttg cggctcgtgc cttgggttat
     9241 cgtggtaaaa agcatatcac ggcggctgct tttattgagt ttgtgcatac tgctacactt
     9301 ttgcacgatg atgtagtcga tgaatccgat atgcgtcgtg gcagaccaac cgcaaacgcc
     9361 cattttggca atgcggctag tgtattggta ggggatttca tctatacccg ttcgttccag
     9421 atgatgacgg atttagactc tctgcgtgtg ttaaaagtga tgtctgccgc caccaatgcg
     9481 ttggcagaag gggaagttca gcaattaatg aacgtgaacg acccaaacac cactgaagcg
     9541 aactatatgc gggtcattta caataaaacc gcccgcttgt ttgaagccgc cactcaatgc
     9601 gtggcgattg cggctgatgc ttctgaggaa attgaaaccg cattaaaaaa ttacggttgc
     9661 tacttaggca cggcattcca gctgattgac gatattttag actactccgc tcaaagcgaa
     9721 agtttaggca aaaacgtagg cgatgacttt gtggaaggta agccaacctt gccattgctc
     9781 cacgcaatgc acgctgccga caaagcaggc aaaactactc aagcagagct gattcgcaat
     9841 gctatcgaaa acggcggcga attggaacaa attccacaag tattggcaat tatgcaagaa
     9901 catcaatctc tggattatgc catgcaaaaa gcccgtgaag aagcccaaaa agcggtggat
     9961 tcattagggg ttttaccgga aagcgagtac aaacaagcct tggtttcatt ggcgtattta
    10021 tcggtggatc gctcttatta atttgcaaaa aatcatataa atttaaccac ttgtaggggc
    10081 aaatgatatt tgccccataa cctataattc ttttgggcaa atgttatttg ccccaacata
    10141 acaatgactg aacaaaacca acgaccccaa gaacatattg aaagcgtacg agcgagacgc
    10201 cgtgctcaaa atcagaaaaa aggcccgaat gccccgtttg tgcgtgagaa attaacgctg
    10261 ccaaacggac ataacaaatt actgctgcac tcttgctgtg ccccttgctc gggtgaggta
    10321 atggaggcta ttcacgcctc cggcattgag tttacgatct atttttataa cccgaacatt
    10381 cacccgctga aagagtattt gatccgcaag gaagagaata ttcgctttgc cgaaaagtgg
    10441 ggtattccgt ttatcgattt agacgatgac tacgaaaacg accgcaaaga gtggttcaaa
    10501 aaagccaaag gaatggaatg ggagccggaa cgaggcattc gttgcacaat gtgctttgat
    10561 atgcggtttg aaaaagcagc ggaatacgct cacaacaacg gtttccctgt atttaccagt
    10621 tgcttaggca tttcccgatg gaaagatatg aaccaaatca acgactgtgg tcaccgtgca
    10681 gcagccaaat ttgatgacgt ggtttactgg gactacaact ggcgtaaagg cggcggctca
    10741 caacgaatga tcgaaatcag caaacgtgaa cgtttctacc agcaagaata ctgcggttgc
    10801 gtctattcgt taagagatag caacaaatgg cggttggaaa cagggcgtca gcggattgaa
    10861 atcggtaagc tctattactc acccgattaa atgttacttt tctttgcttc gccaaagaaa
    10921 agtaaccaaa agaaaggcga cccgaacttc gcttagttac gatttcctta acggaaaatt
    10981 tgtaaactcg ctacgctcaa acagtacaaa ttttcctaga aatcgcaagt cgctcagacg
    11041 ggacaagcgg tacattattc aaaatttttt acaaaatata gtgatgtact cttcccttct
    11101 gaaccgcccg aacgtgtttg aattggtagg aaaatttact ctgagcgaag cgaatgtaaa
    11161 ttttccgtga aaccaattca aactaagtga ggataagcgg tgaagtaggg gtgtttcttt
    11221 ggttactttc tttgcacatg caaagaaagt aacgaaaact cagatataga tttcaactta
    11281 aaaatttaca gaaggaataa taacaaatgt caaaattcgc tatggttttc cccggtcaag
    11341 gctcacaagc ggttggaatg cttgccgacc ttgcgccaca atatccaatc gtggaagaaa
    11401 ccttcaaaca agcaagtgat gtgcttggct atgacttatg ggatttagtg caaaacggta
    11461 ctgccgaaga gttagggcaa acccaccgca ctcaacctgc gttgcttgcc tcaagcgtgg
    11521 cacttttccg catttggcaa caaaaattcc ctgagcaaaa accagccgtg atggcagggc
    11581 atagtttggg tgaatactca gcgttggtgt gtgccggtgt gttggatttc caagatgcga
    11641 ttaaattggt cgagttgcgt ggtcgtgcaa tgcaagaagc cgtgccggca ggcagcggtg
    11701 cgatgtttgc gattatcggt ttagataacg aaagcattat taaagcgtgc gagcaagcag
    11761 caagcgagac cggtgaaatt gtctctgcgg taaactttaa cagcccgggg caagttgtga
    11821 ttgccggcac aaaagcagcg gcagaaaaag caggagaatt gtgtaaagcc gcaggtgcaa
    11881 aacgtgcgtt accattagcg gtgagcgtac cttcacactg tgctttaatg aaaccggcgg
    11941 cagaaaaatt agccgaagcc ttgcaaaata ttgagctaaa tcaaccgctt gtccctgtta
    12001 tcaacaacgt ggatgtggca gtggaaacag atgccgatac cattcgtaat gcacttgttc
    12061 gccaacttta cagccctgtt cgttggacgg aaaccgttga aaaaatggca caagatggca
    12121 tcactacttt atatgaaatc gggccaaaca aagtcctaac cggtttagca ggtcgtattg
    12181 taaaagaatt atcagccaaa gcggtaaatg atgttgccag ctttgaggcg gttgaggctt
    12241 aattttcggg agcgtaaaat gagtaaagaa accctattta tgctaataag tgcattgatt
    12301 gccttagtga ttttaccttt agcttatact gttggtatcg ctaaagaaac attaggcgga
    12361 aatatgggaa tgttatccat tgctgccggt tgctcatttt tagcctattt tttaagtcta
    12421 aacccgaaaa ttcgccacgc ctttatcgga ggttcagcta ttacagctgc tgctattcaa
    12481 gcttgggtat tatatggtgt gctattaagc gaaaatgacc ccaaaagtgc ggtcgtttta
    12541 tttcaaattt atctgtttag tagtttaggg ccactgtttt tttcagctat ttgggcattt
    12601 actcgcccac gttggattta ccctaaacaa ggtagtgcgg tgaaatatgc cttatttggt
    12661 ggcttaacga ccgtgataaa ctacttgatt acccttttta ttttttatat tctgacgtta
    12721 taacgtcata ctaaggagaa tttatgagca aaatcgcatt agttacaggg gcaacccgtg
    12781 gaatcggcaa agcgattgcc gaagaattgg tagcaaaagg ctacatcgta gtcggcaccg
    12841 caacctctga aaaaggggcg gaatctattt cagcttattt aggcgagaac ggcaaaggct
    12901 tagtgctaaa tgttgccgat gcagagtcga ttgagagcgt attaaagcag atcaaagaga
    12961 cctttggcga tgtggacgtg ttagtcaata acgccggcat tacccgtgac ggcttattaa
    13021 tgcgtatgaa agatgaggat tggttcgaca tcattcaaac taacttaact tcggtttatc
    13081 gtttatccaa agcggtatta cgcccgatga tgaaaaaagg cggacgcatt atcacgatcg
    13141 gttctgtggt cggctcaatg ggcaacccgg ggcaaaccaa ctactgtgct gccaaagcag
    13201 gcttagttgg tttttctaaa tctttagcga aagaagtagc aagccgcggc attacggtaa
    13261 acgtggttgc tccgggcttt atcgccactg atatgaccga tgagctaacc gaagatcaga
    13321 aaaatgcgat tttaagccaa attcctgccg gtgaactcgg ttctccacaa gatattgcca
    13381 aagcagtcgc tttcttagcc agcgatgatg cccgttatat caacggtgaa accattcacg
    13441 ttaatggcgg tttatatatg agctaatccg ctacaagcgg tcttttttca accgagcttt
    13501 gtaaattcag agttcggttt tgttatttgt tattttgtgt tatcacctgc tttataggta
    13561 taggtgaaaa agtgtgaata tgttatgact agaaatacat tagtagtagg ctttttattg
    13621 tttgctattt tctttggtgc cggcaatctg attttcccac caaaattagg ttatgaaagt
    13681 agtacagaat ttttctcagc catttcaggc tttgttttaa ctggagtagg gcttcctcta
    13741 ctcggtatta tcgtcagtgc attttataat ggaggctata aatctgcatt agacaaaatc
    13801 cacccttggt tttctttagc attcctaact tctatctatt tagcgatcgg tccattcttt
    13861 gccggtccgc gcacggcagc aactgcctat gaaatggcga taatgccgtt tttaggggat
    13921 tccagccaag tgtcaatgtt aatttttacc ttaatttact ttgcctttac cctatggtta
    13981 gcgctaaatc caaataaaat ggttgatcgc attggtgcaa ttcttacccc gatcttgctt
    14041 ataaccatca ttggattagt tattcgagcc ggctttattt tagataccga tccacaaatc
    14101 actacgccta atacgaatga acaatcttac ttttttaaag gtatggttga tggctatcta
    14161 actatggatg cacttgcttc gttagcctat tcggtaattg tattaaatgc tattcgtggg
    14221 aaaggggtaa gccaagccgc attacaacgc caaacagttt ctgccggctt agttgcagca
    14281 gttgctctag ctgtaattta tatttcattg ggttggattg gtaataatat gccaattagt
    14341 gcaaacacac tttcgatgtt atcagaaaga aaattggatc taggtactta cattcttaac
    14401 actgtgacta cccaagcctt cggtgaactc ggacgtagtg tcttaggagt gattgtttca
    14461 cttgcctgtt taaccactgc tgtcggttta gccgtatcag tcagtgaata ctttaatgaa
    14521 attttcccga aaatttcata taaagtttat gctatcttat ttactgtgat tagttttact
    14581 gttgctaacc aaggattaaa agaagttatt agcaaatcca ttccggtatt attagttctc
    14641 tacccaatag caatgactgt cattttaatg ttgctgatta atttagtgat taaacttccg
    14701 ttgtctgcac aacgtctatc actcctatta gtgacaattg tagcgatagc ttcagttgcc
    14761 ggtgtcgggt ttaccgaaaa cttgcctcta aaatcctact cgatggaatg gctacctttc
    14821 gctatcattg gagctattat tggagcaatt atccacccgc ttaccggtcg aaagcataaa
    14881 taaagtaaag gcagtgagca ttcactgcct cttttttagg agagaataat gcctgaatta
    14941 cccgaagttg aaaccagcgt tcgtggtgta tcgccctatt tggttgggca aactattgaa
    15001 caaatcatcg ttcgtcagcc aaagttacgt tggacggtga gtcctgaatt aagccaaatg
    15061 gcaggggcaa aaattaccgc agtagaaaga cgtgccaaat atctgattat ccgcaccgac
    15121 aaaggcgata ttttggtgca tctgggaatg tccggctcgc tcgggatttt gcaagaacgt
    15181 caacaaaaag aaattggcaa acacgaccac gtcgatctta ttacccaaaa cggcacaatt
    15241 ttacgctata acgaccctcg caaattcggc tgttggctat gggcagaaaa agcagaagat
    15301 cacgaactgt tgcgtaaact cgggcctgaa ccgctttcaa acgatttcac agcagattac
    15361 ttatttgcaa aaagccgcaa aaaaacgacc gcttgtaaaa cctttattat gaccaatgaa
    15421 gtggttgttg gggtggggaa tatctatgcg tgcgaaagtt tatttatggc aggcattcac
    15481 cctgagcttg cagcacaaaa cctgactaaa aaacagtgcg aacgtttagt aaaaaccatc
    15541 aaagaagtgc tgactaaagc gattattcaa ggcggcacaa cactgaaaga ttttatccaa
    15601 cctgacggca aaccaggcta ttttgctcaa gtgttgcaag tgtatggaag aaaaggggaa
    15661 acctgtaatg actgcggaaa gccgattgaa actaaagtaa tcgggcaacg taatacctat
    15721 ttttgcccga agtgtcagag attgccgaag taatctaata ataaactctc tccccctgag
    15781 ggagagagac agcttgttga aacgttaagt gaaacaagca gagagagggt aaaacctaaa
    15841 cctgcaacca aaaggtaaca ggcccgtcat tttgtaggct gacttgcata tcggctgcaa
    15901 attgcccggt ttgggtatga atcttagtgg cggcttgttg atgaaagtag gcatacaaac
    15961 gttcggcatc aaccgggctt gctccttttg agaaactagg acgcaagcct ttattggtat
    16021 ccgccgcaag ggtaaactgt gaaaccacta acaaactgcc acctgcttgc tgtacgttta
    16081 agttcatttt cccctcgcta tccgaaaaca cccgataatt cagcactttt tccagtagct
    16141 tatctgcttt cgcttcatca tcgtcttttt ccacaccgag cagcaccaac aaaccgcttg
    16201 caatttcgcc aacgacttgc ccttcaacct ccacttttgc gaatttaacc cgctgaatta
    16261 agcctatcat taatgctccc cttgtctgtt tccatttcgt ctaaaaccgc cgcaaattgc
    16321 ccgccaagta ataccacctg ccaacttaac tgaatccata acagcataat cggtaacacc
    16381 gctaatgctc cataaattgc ctgataagac gggaaggcag taatatacca aataaaggct
    16441 ttcttcccta aagtaaagaa aatcgctgcc attaatgccc cgatagcagc gtgttgaaat
    16501 tttacctttc taattggaat aaatttatac actaaggtaa aaagtagcca aattagcaaa
    16561 aacggcatca attctaataa atgctgcccg agcgataacg ctccatttcc attaaaaata
    16621 gaaagcgaca ttacataggt gctaatcgca atgctagcac cggcaagcag cgggccaaac
    16681 agcaaaatga gaaagtaaag caagaaagag aaccacatcg gacgctgacg attatcgtgc
    16741 caaatggtat tcaatgcctc atcaatactc ttaatcagca taatagtaac cacaaataag
    16801 ccgataaaac ttaccagccc catttgtttg gcattactga caaacaactc aatgtattcc
    16861 gacaccatct cgctcgcact cggggcaaag ttgtcataaa tgaacgcttt taactgctcg
    16921 tttgcttcgt ggaaaatcgg aaaaaaggta aaaatggaaa acagcacgac aataaacggc
    16981 actatcgcca gcattgtgct ataagtgaga taaccggctg aaatcgcaat gttattttca
    17041 ttgtaacgct tggcaaagag cttaataaat ctccacagtc gatttaacat cttaacctct
    17101 caccaaataa tcgccttcac acacccattt gtaggtggtt aaggcttcta atcccatcgg
    17161 gcctcgtgcg tgtaatttct gcgtgctaac tgccacttct gcccctaaac caaactcacc
    17221 accatcggta aaacgggtgc tggcattaat ataaaccgcc gcggcatcaa cctgttgtac
    17281 aaattgacgg gcaagttgat aatcggaggt taaaatcccc tctgaatgct gcgaaccata
    17341 atggcggata tgctctaccg cttgttgcag gtcattcacc accaccacgt taagatcaag
    17401 cgataaccac tcttggctca attttgcttg atcaagcggt tcaattcctt caattttttg
    17461 caaatcgtta ctgtgaatag taacgccaag ctgttgcatt ttggcgacca atttcggcaa
    17521 aaattccacc gcaatcgctt tttccaccaa cagcgtttcc agcgtattgc aagtgcttgg
    17581 gcgttgcgtt ttggcattag cgatgacctc tagagatttc tcctgatccg ctgttttttc
    17641 cacaaacaga tgacaaaccc caatcccccc cacaatcacc ggaatggtcg aattttcttt
    17701 acagaattga tgtaaacctg caccgcctcg agggatcacc atatcaatgt agcgatctag
    17761 cttcaatagt tccaataata aggctcgatc cggatccgtc accgcttgca ctgccaattt
    17821 cggcaagccg gctttttcta acgcatcttg cactacatca accaacacag cattggtaaa
    17881 tttggtctct ttaccgccac gcaaaatcac tgcattgccg gtttttaggc ataatgatgc
    17941 cacatcaatg gtcacattcg ggcgagcttc gtaaatggtt aaaatcaccc cgagcggcac
    18001 acgctggcgt tcgattttca aaccgctgtc taacacgcca ccgtccatca cctgccccac
    18061 cggatccgct aatttggcaa catttcgcac atcgttagca atgtctttta gccgatcttc
    18121 attcaataat aagcggtcaa taatcgccaa tgaaatccct tgtgcttgag caaattcaat
    18181 atctttggca ttagcgtata aaatttcttc tgcacgttgc tcaaggctat cggcaatcgt
    18241 gagtaaggct tggtttttct gtaggttgcc aaattgagcc agctcaaaac tagcttgttt
    18301 ggcttgctgg gcaagttcta tcatctgcat aaattaggtc tcatttaatc aatattctcc
    18361 ataatctaac acgttctttt atgtgaagaa atatgcaaaa gccaagaaaa ttggataaaa
    18421 tgggggaatt ttaaaacatt acgcaattcc cctctccctg atttttctcc tgaacggaga
    18481 aaaatctatc cctctcctac aaggggagag ggtagaattt aactctctcc ccttgtggga
    18541 gagagaccgc ctacagattc gttcagaatc tgtaggcaga gagaggggta aaaacagata
    18601 aaacttaaac aaaatgataa acactacccc taaacagcta atccacattc ttccgcctca
    18661 actggcaaac caaattgctg ccggcgaggt ggtggaacgc cctgcgtctg tggtaaagga
    18721 gctagtggaa aacagtttag atgccggagc caatactatt caaatcgaca ttgaaaaagg
    18781 cggctctcag cttatccgca ttcgagataa cggttgtggt atcagcaagc aagatttacc
    18841 gctggcactt gctcgccacg ctacgagcaa aatcagcagc ttggaagatt tagaagccat
    18901 tttaagttta ggctttcggg gcgaagcatt ggcaagtatc agctcggttt cacgtttaac
    18961 actgacctct cgtaccgcag agcaaaccga agcatggcaa gcctatgcac aagggcggga
    19021 aatggcggtg gaaattcagc ctgcctcaca cccgattggc acaaccattg aagtagcaaa
    19081 tctgtttttt aacacaccgg cacggcgtaa atttctacgc accgataaaa ccgaatttgc
    19141 ccatattgac gaggtggttc gccgcattgc ccttgccaag ccgaatatca gtttcagctt
    19201 aagccataat ggtaaaatcg tccgccaata tcgcaaagtg caagacaatt cggtagagca
    19261 gcaacaaaaa cgggttgcag ccatttgcgg tgatgagttt attcaacatt caacttatat
    19321 tgacaggcaa cacggggatc tgcacctaca cggctgggtt ggctcaccgg ctcttgcccg
    19381 tctgcaaaac gacctttgct acagctatgt gaacgggcga atgatgcggg ataaaaccat
    19441 caatcacgcc attcgccaag cctacggcga cagcattgca agtggttact atccggcttt
    19501 tgtgatcttt ttggatttag atccgacaat ggttgatgta aacgttcacc cggctaaaca
    19561 cgaggtgcgc tttcatcaag gaagactggt acacgacttt attttgcaag gcgtactcaa
    19621 cagcctgcaa caaacccaac ctacgcttga actgcgaaat gaagtgaacg agccgttacc
    19681 gagctatgtt caagacacta accgccaagc tgcggggcaa aatatttttg tgtcgcaaac
    19741 cgctccacaa gcggccgaat ttacgcaaaa aaatgcaagt cgatcaagct atacgcctaa
    19801 atttgaacga agcaacagtg tgagttcgtc cgctcaaaaa tggtataagg aattggttgg
    19861 tggcgatttg caccaaacaa cgccaactat caaaacgcaa agcacgcttg ttgagccaaa
    19921 aacagaaccc caaactgaac ataaaacaga agccgtttcg caaaaaatta cgcaaattgc
    19981 accgcttgca agccaccatt cacaagcctt agcgattgta aaaaaccaag cggtgttaat
    20041 taaagaagag gaaaattttt acctgcttcc actggcaaca ttagccgagc ttaaactcaa
    20101 gctacaactg gaaaaagggc aatctcaagc gttgttgatc ccactgaatc tcagtttaga
    20161 tcaacaacaa accgaacgct ggcaacaaac caaagaagaa ctaactaagc ttggcttttc
    20221 gatcagcgaa aaacagtggc aagcccaaac acggctcaca gtgctttccg taccacaggc
    20281 tgtcagagaa caaaacctgc aacagctttt atttgctctg ttcaaccaaa cacaagcggt
    20341 caatttagcc gaattttttg caaaaaaatg cgaaaaaccc accgcttgta cgctaagtga
    20401 cgtgattgct ctactctcag aaattgagct ttatgccaat gggaaaaaag agctggaggg
    20461 aataaggaag gaagtggatt tttccaagtt tttatagtct aaagggcaat accctttagc
    20521 caaataaatg agagtggctg ccaattcgca gcagctctag cttatcatct tccacttttc
    20581 gatagataag aaccaaatca ggttggatat ggcaatccct aaagcctttc cattcgccgg
    20641 ttaaagcgtg atcgcagtat ttctcaggta atggcttgtc attaatcaga aaatacaacg
    20701 cctcaattaa tgaagaggat aaagactcaa ccgcacattt tttatagtca cgtttaaaag
    20761 cattactata ctcaatctct cgcattgagt tgctccatta aatccgcaat actatttgct
    20821 gaatgtagct tttcctcgcc attcttaaca gcccttaata cttctgctgt ctcaaaatta
    20881 ggctgataat caaactgaaa acgtttttct gttgcgattt tcgctaatgt cattcgcatc
    20941 acatcagaga cagtcaagcc gataccggct aacacctcac ttgcttgctc tttaatttca
    21001 gggctgattc ttacgcttac taatgcacta tttgccatca aaaactcctt ttgtatatca
    21061 aatgatatac aaaataacat ttaacaaaaa attgtgcaat aaaaaagaaa ttcaaagaaa
    21121 agaaatgaat agttaaaatt agctcgttac aagaaatcat tgagttactc aagaaatcaa
    21181 ggtaatataa agaagtctgg gcggaacacg aacccgcccc tagcatctag ccgcttacaa
    21241 gaacagatag attagttgaa agagcgtgaa aatttcaact gctgcacaca gaaacccaag
    21301 tgcaactaaa atcaatagta gttctttcat tgtaagcctc cttagtgcta ctaaggatga
    21361 tttaggctca ggctactgcg aatagcccta acgagcctac cagtagcaca atcaggattg
    21421 taacaaaaaa gctgtgaatt tcacggcttt ttttgtatct atatacagta tattaatatg
    21481 aataaaaaac cccttgccct ttttttaatg gggccgactg cctccgggaa aaccgattta
    21541 gctattgctt tacgccaaga attgccggtt gaggtaatca gtgttgattc tgccttaatt
    21601 tacaaaggaa tggatattgg cacggcaaag ccaagcaagg aagagcttgc ccttgcaccg
    21661 catcgcttga ttgatatttt agaccctgcc gagagctatt cggcgatgaa tttccacgct
    21721 gatgcgttgc gtgaaatggc agatattacc tcacagggta aaattccgct cttggtgggt
    21781 ggcacaatgc tttattacaa ggcattgctt gaagggttat ctcccctgcc ctctgccgat
    21841 ccagccattc gggctgaaat cgaaagccga gcggcacaac acggctgggc aacattgcat
    21901 caagaattag tgaaaatcga cccgattgcc ggtgcaagaa ttaacccaaa tgacagccaa
    21961 cggatcaacc gagcgttaga agttttttac attaccggca aaacgatgac cgaactcact
    22021 gctcagcaag gtgaggctct accttataat atcttacaat ttgcaatcgc tcctcaagat
    22081 cgtgcagttc tacaccaacg gattgaacaa cgctttcaca aaatgattga gctaggcttt
    22141 gaagaggagg tcaagcggtt atttttacgc aaagatttgc atattaattt gccctcgatt
    22201 cgctgtgtgg gctaccgcca aatgtgggaa tatttgcaag gcgatatttc gctcgatgag
    22261 gcgatcttta aaggcatttg tgccacccgc cagctggcaa aacggcagat tacttggctg
    22321 cgtggctggc aaggcgaact gacttggtta gatagtttag ctccgaccag ttctaaagca
    22381 aaaatggtgg aaaagatcga tcattattta aagaattgtg ataatatcta aacgcctttg
    22441 gcacttatcg cattatttgg tgtcttaaaa atcacacaac tataaaaagg aaaataacaa
    22501 tggcaaaagg tcaatcttta caagatccat atttgaatgc acttcgtcgt gagcgtattc
    22561 ctgtttcaat ttatttagtt aacggcatta aattacaagg tcagatcgag tcgttcgacc
    22621 aatttgtgat tttattaaaa aacactgtaa gccaaatggt gtataaacac gctatttcaa
    22681 cggttgttcc tgcccgtgcg ttatcgcata acaataacaa ccaagcccaa cacgctcagc
    22741 ctgctgccga agtaactgaa caagcggaat aataacatta ttactcaacc aatgttaaac
    22801 gaatcattgc caaactcaga agaaaattct gcgtttggct ttgctttatc tgaagcaagc
    22861 caaactacag aagccgcctc gcctaccgat ccagaaaatc aagataaagc cattttggtg
    22921 catctctatc tcgggcaaca taaagatgtt gaaaatttgc tggaatttaa aacgctggca
    22981 gaatctgccg gtgtcgaagt gctggcaacg cttaccacca gccgccaaag ttcgcatatc
    23041 aaatattatg tggggcaagg caaagcggag ggaattgccg aagcggtaga acgactcggg
    23101 gcaacagtag tgctggtgaa ccatcaactt agcccggctc agacccgtaa tttgcaatcg
    23161 ttatgcggct gccgtgtggt ggatagaacc ggcttgattt tggatatttt cgctcaacgg
    23221 gcaagatcgc acgaaggcaa actacaagtc gagctggcac aacttcgcca tttatcgacc
    23281 cgtttggttc gccgagttac taatcaagac caacaaaaag gcggagcagt tggcttgcgt
    23341 ggtccaggtg aaacacagct cgaaaccgat cgccgtttga ttaaagtgcg aatccaacag
    23401 ttactcaacc gcttggaaaa agtcagcaag caacgcaatc aaaatcgaaa aaccagacaa
    23461 aaagccgata ttccaacagt atccttagtg ggctatacca atgccggcaa atctaccctg
    23521 tttaatgcga ttacccaagc tggtgtttat gctgccgatc aactttttgc gacccttgac
    23581 ccgactttac gccggattca ggtgcaagat gtcggcacga caattcttgc cgatacggta
    23641 ggttttatcc gttttctacc gcacgattta gtttcagcct ttaaatctac cctgcaagaa
    23701 accaccgaag ctactttact gctccacgtc attgacggct cagacgaacg caaaaacgaa
    23761 aatattgatg cggtaaatca agtgttggac gaaatcggag cgttagatat tcctacttta
    23821 ttggtattca ataaaattga taaattagaa ggtgtagaac cgcatattga acgcaatgcc
    23881 gatggcacgc cagttgccgt gtatctttcc gcccaagaaa atagcggcat tgagctgtta
    23941 ttccaagcca ttcaagaaag gcttcgcagt aacttagtgt gtgaaaactt gctcctcccg
    24001 gttactgccg gtgcaattta cgcacaattt aaagcagaaa actgcattaa aaccgagcat
    24061 tttaatgagt tcggtgaacg gattatctct attgaaatta acgaagtgca atggaacaaa
    24121 tgggtgaaac aatttccgga tctagccgaa tatattgagc tggcaaaatg ggggtaatta
    24181 atctcacttc tgagtaagtt atatttaaat tatgcaagcg gtcaattctt tacgtttttt
    24241 tgcaaaaaag tgtaaagaat tgaccgcttg ttttatccat taaatccaat ttagccaata
    24301 aaaaaatccc tcaaataaac cagatttccc cgttctattt gaaggatttt atttattctt
    24361 ccccaaaagt ggggaagaaa agcttaatca agcagttact accactgata acctacgctt
    24421 gcagcagcac ctgtatcacc acggctgtta gagttaacac tgaatttgat acccacttta
    24481 ccattatctg ataaacgaga ataacctaca gcaatagctc cttgaccacg gtaagcacct
    24541 acaccggctg aaaccatcga tttaccaggt tgtgttacgt gatataaatt acctgcggct
    24601 aatgcacctg caatacctgc acgtaagtct ttatctacgt tactgatacg attgttcaga
    24661 cgattttctg cacctttcaa ctgattcaca ttaacagcat cagtgccttt cacacccgga
    24721 gcaacgttcg taatacgtgt ttgcgcattc ttgctacctg caatgttaag ctcatttacg
    24781 ccatcttttg caacagttga actgatagtt gtaccaccaa ctttcactga atcaaattca
    24841 agattgcttg aggttgccac ttcaacagtt gaacctttac gtgaaacaac gatgtttttg
    24901 ccacctgaaa cggccacttt accattgtta ttaacacgtt gagcaccttt ctctgaagtt
    24961 tcagctacat taccatcaac agtgagatac cagcctgtat tctgcattgc attatacaac
    25021 tggctaccgc tcacaacatc tttacttgtt gccgttacat caccatcttt aacgttagtg
    25081 atcttcgtgc ctttcgcatc aataccgcct ttagttacac ttgggccgtc tttaatggtt
    25141 aaaccattgt tatttacggt tgtgtcgcca gttgttacag aaccatcttc cgttaaatca
    25201 attgctttcg ctaattgtac ctctaatgtg tctgtaccat tcgctttcac attgatgttg
    25261 cctgatgctg acttaaagtt ttcagaagct gttttatcca caccttcacc tttcacttta
    25321 acttcagtat tcagtttctg acggttcttc acatcttcat tgttaccaga gaagattaaa
    25381 ccatcattta aggttgcaac ttgttctgtg acagttttac cgtctttatc tttggtctca
    25441 taaacgatac gagtcttacc gttctcaccc ggtaatccat ctttaccatt tgtaccatca
    25501 acaccttcag caccatcttt cactgcaata tttgcacttg caccatcttt accgtcagcg
    25561 cctttcggac cggttaagcc gatagagcca tctttaccgt ttaatacaac agaagcgcca
    25621 tctttacctg tagctccaat tgaaccatca acaccgtctt taccgtcacg gcctgcagta
    25681 attgtgccgt cacctttaat ggttacgcca tctttaccgt ctttgccagc aataccgatt
    25741 tgaccgtctt taccatcttt accaccaatg gttaagttgt ttttcaagcc gaaggtcacg
    25801 ttattacctt ctttagtaat aataatgtta ccgtctttgt tgtttagatc aactgttgct
    25861 cctggtttaa cgttgccttt gtctttacca tttgctgtta agttccaacc tgcgttagca
    25921 acttcttgca cttgatataa ctggctacca tttaccgcat ctttgctggt tgcagaaatt
    25981 tcaccgtctt gaacgttaat gattttctta tcgcctgcat tgataccggc tttagttaca
    26041 cttgggccat ctttgatagt taaaccatca ttatttaccg tagtatcacc aatagttaca
    26101 gaaccatctt tcgttaaatc aatgtctttc gctaatttaa ctgttaacgc accattgttg
    26161 tttacaacac cgatattgtt atcggacagg ttcgttaaat cagtatcacc gcctgagatt
    26221 tttaacgtct cattaagttt cttaacgatt tctttaccgt catcacctac gaatcttaag
    26281 ccatcgttca gtgttgcaac ttcctcagtt gtaccgtctg gtttctcata aacgatacgg
    26341 gttttgcttt cgccatcttt accgtcgtta ccgtcaaggc ctttagcacc gtcttttaca
    26401 gagatagttg cacttgcacc atctttaccg tcagcgcctt tcggaccggt taagccgata
    26461 gagccatctt taccgtttaa agtaacacca actgtaccat ctgcaccttt aacaccgatt
    26521 gaaccatctt tacctggacc gccaatggta aaatcgttat ttaacgtaaa gtcaatcaca
    26581 ttatcactta ctgttgtgat gatgtttttg tctttagagg tgtacttaac agtttcacct
    26641 agtttaacgt gatcagtttc accattatcc gctgcaatgc taaagccttt ctcgataata
    26701 tcgttgcttg catttacaac atcattaata ttcgcagcgt tagtaccaac ttcttttaat
    26761 tgatcgtctg ttaagtcgtt cactgaagtg attggcttac catctttacc gttaatgccg
    26821 tctttacctg ctaaaccgtc aataccgctc ttcacgttaa caatttggtt gccgccattg
    26881 tctagaccgt cttcagtaag cttaactgct ttaccatctg tgccatcttt tggcgtgata
    26941 gttacgccat tattatttac tactgttgtt ggacctttac cttcttgacc attctctcca
    27001 tcttgtggtt tgaatgtagc tgagttcaag tctttaagat ctttagctaa ttgaacagat
    27061 aatttaccat ctttgctgtt tacgccgatg ttatttgcag ttagcttatc tttatcagct
    27121 ccaccaatga tttctaaggt ttcattcaat ttcttagata ctagtgttgc atcatcacct
    27181 ttaaagtgta aaccatcatt taaagtagct acttgctctg gttcacctat aggatcacca
    27241 ttgccatctg ttggctgata ttggatacga gttacaccat ctttacctgg taaaccatct
    27301 ttaccaacaa gccctggttt gccctcagta cctttaatgg ttaaaccatc tttaccattt
    27361 gtaccgttca agccgattga accatcttta ccgttaagaa caactgcaga accgtcttta
    27421 ccgtttacac cgatagtacc atcaatacca tctttgccag ggcgacctac agtgatagct
    27481 ccatctttac catctaaagc aatagcatct ttaccgtctt taccagcaat accaacttta
    27541 cctggttcac catctttacc aacagtaata ttattcacta ggctaacttc taatgcatgg
    27601 ccaccatctt tctcaacaac gtttgtttta acattgccat caccaatgat cttagctgtc
    27661 gtacctaagt tttgcttaaa ctccttgttg ttctcatctt ttagaccaaa cgcatctgtt
    27721 gtcacctcag taacagtctc agtaacagta tttttcaagt caccgacgtt aaccgcattg
    27781 ttaagaacat cacctgctgc ctcagtaagt ttaacaggtt gaccatcttt accttttaag
    27841 ccgctatcaa cattggtgat ttggttacca ccgttgctta agccatcctc tgttaaggta
    27901 acattagatt tagttgcatc attaggatct ttcttagcaa tcgttacacc atctttattg
    27961 ataactgtag aatcaccttg tgtgccgaat gttgcactat ctaagcctgc tagatctttt
    28021 gctaacgcca cagtaatggt attgccaaca acctgtgtca tgatattttt accagcatca
    28081 aacttagccc aatcagtgtt tgttgtagca cctttaatat ccacctgcgt atttaatttc
    28141 gcatcgtgaa ctttgccatc attcgcaccg aattttaagc catcgttaag tgttgcaact
    28201 tcttctttat caccatttgg tttttcgtaa acaatacgag ttttgctttc gccgtcttta
    28261 ccgtcgttgc cgtcaagacc tttagcacct ttctcaactt taattgatgc tttaccatct
    28321 tttccatctt ttccatttac gccatcaacg ccgtggaata cgatggcttc tggtttaatt
    28381 gttacaccat ctttaccatc agcaccttta acaccaactg aaccatcttt acctggttta
    28441 ccaccaacag agatgttatc ggataagcca aaatcgatgg tattatttgt tacggttgta
    28501 acaacattct tatcggttga ggtgtactta acagtttcac ctaacttcac attgtcttct
    28561 ttagcaccac ctcctaagcc agagtgatcc gctgtaatgt taaagccagt tttaactaaa
    28621 gtgtcagcta ctgcgtaaag ttgtgaaccg ttaatcgcat ctgttgaatt ggaagcaatt
    28681 ttacccggtg caacaaactt aatttggcga gcattggttg cattacccac actcacataa
    28741 tcaccatcaa caacattttc atcgccagca aagctgctat attttaatgt gccaacagtt
    28801 gcagtatctt ctttagttgc ggttgcttca gtagagtcag aacctagaat tacagaaccc
    28861 tttgtcttaa cagtaacatt agaacctaat acgaaagtat ctttacctga aactgtattg
    28921 ttataaccta aagccgcagc acgaataccc gaaacagtac tatttacacc ggctgcaatt
    28981 gagtttttac cctttgcggt tgagttgtaa gcaatagcag ttgcataatt accttttgat
    29041 ttggcctcaa aaccaattgc tgtgccacct tcatgcgtaa tattggcacg tgtacctact
    29101 gctgtcgcat tcgccttact tacattagca ctataaccta tcgcaacaga attattacca
    29161 cttgaattag ccgtatcacc aattgccatt gcaccatctt tgctcgcgtt agaatgcgaa
    29221 ccaatactga tcactttttc tgcatgagag tttgcattcc aaccaatgct aatagcatta
    29281 cttttccagg ctttagaagc attaccaaaa gcaatcgcac cgattcctgt tgtattcgaa
    29341 tttacaccaa aggcgataga accatcacct gttgcacttg catttgttga aaacgccaaa
    29401 gtatcattcg aatttgcacg agtattcgta cccaaagcaa atgcattatt tgctactttc
    29461 gctgtatcag gattaattac ctgtcctaat tcagaaatat ttgaattctc taatttaaag
    29521 ccaccggacc aagcgttagt accaatggca aatgaatggt taccattagt tttcgcttta
    29581 gtaccgattg agaatgcatc tgttccaaat gctaaagtat tattttgccc atcataaatt
    29641 gaacgtctat tttcatgacc gtaacttcca tccactgtct gtggagtacc actaccaatc
    29701 gcaaaagaac ggtcacctag cgctgtagcc gaagcaccaa tggcgaagct agctgtagca
    29761 tttgcccaag atgttgaacc aattgcagta gaataatctg caattgcagc agattgacgc
    29821 attgcagcaa atgagttaaa tccttccgca cgtgcagagg tacctaatgc tacagaacca
    29881 atacttgcag tacgagaaaa agaaccaatt gcaatagaca atccccctcc agaatatgaa
    29941 taatcaccaa tggctatgcc tgacgctttc ggttttcctc tactttttct gttattgtct
    30001 aaagctacag cattgtgtcc aattacaatt gctgaggtag tattagactt atacaataat
    30061 ctagaatcct tctccttatt aacagagtta ttagattctt gaagcttagt tctgtctgca
    30121 taggataagc tacctgggtt aaagtagtta tatggattcg taatagaatc tgtagccaaa
    30181 ctagtgtttg tataaatatc tataccacca ttaacaactt tttttggtgc tttttgttgt
    30241 acttctattc tatcaataat caccgccgct tctgccggtg tagcagaaag cataaaggct
    30301 gccattccac tgataagggt tgctccccct agaatgctag ccgctgctaa tttaatagta
    30361 ccgcgcttat cagtagaaga agcggcttta ccttgcgatc gagcaagttc agacacaact
    30421 tccatttttt gcgtcgtttg gttaaaaata accttaaata ttttgttcat aattttatac
    30481 ctttagaatt attataaagc t
//
LOCUS       DANMBQ010000013        29870 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.013, whole genome shotgun sequence.
ACCESSION   DANMBQ010000013 DANMBQ010000000
VERSION     DANMBQ010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 29870)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29870)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29870
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.013"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..1036
                     /locus_tag="PXE92_000560"
     CDS             <1..1036
                     /locus_tag="PXE92_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5759839.1"
                     /translation="CLCCNAKRIFYLLTFYKGFETSQIATAFSLLVFTSQAFSLFAGS
                     WGDSFGRYPIMMLGCLLDALAYILLLTTKNYPLLLLATFFFGLGSTLFSTNARAFLLA
                     NIQDTGDSYQLKTKAQGKFLKVSSLSAMVAPLLTIPFIFYRKAEWLIWISCCIEIIML
                     FVMFKTAPKTHECANGQCERFKFGALKGILNEQFIFVHLLLFIPLGLGSAFYIIFPYI
                     FTNLLDKPELVSVSFFVNNLIAVLLQSDFSRKLNLTVHKLIYIAPILIILQIMPWFYA
                     LQWLSTITAFLYLVIFATITVYANTALSNMLVKLDNGKNQGLMFGSSKLILAITTLGV
                     MNVLPYIFLI"
     gene            complement(1033..2166)
                     /locus_tag="PXE92_000561"
     CDS             complement(1033..2166)
                     /locus_tag="PXE92_000561"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HDL5759840.1"
                     /translation="MLIFMMNEYSPNYYIGVMSGTSLDGVDIALLDFAKNPPKMTACD
                     FFPMPEELRADISALLKTGETNLQKLGEIDHRLGLLYAETINAFLAKNQLKAEDIQAI
                     GCHGQTVWHSPDSEYPFTTQIGDMNLVAEQTGITTIADFRRKDMAVGGQGAPLVPAFH
                     QAIFSDPNRLTVVLNIGGISNISVLNPNSPTVGYDVGAGNTLMDSWIEQHQGKRYDKN
                     GEWARTGKLNTELLATLLDESFFAKAPPKSTGRELFNLTWLAKKLENLTACQPQDVQR
                     TLAEFTAQSIANELLRFESSLPRLLLVCGGGSRNPLLMERISALLPEWEVTTTTEFGL
                     DIDYVEAAAFAWLAYQRIHNLPSNMPSVTGAKKAVSLGVIYPA"
     gene            complement(2358..3197)
                     /gene="queF"
                     /locus_tag="PXE92_000562"
     CDS             complement(2358..3197)
                     /gene="queF"
                     /locus_tag="PXE92_000562"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDL5759841.1"
                     /translation="MNYNDKSLSALKLGQKTEYKSEYDASLLQPVPRKLNRDSLGITQ
                     EQPFNRGADVWTCYELSWLNQNGLPQVAIADVAIDFKSENLIESKSFKLYLNSFNQTK
                     FSSIEEVGKTIQADLARCASGQVSVKIYQLSHYTQQPIVDFAGDCIDEQDIQIDSYAF
                     STHYLENIAEDELVEETLVSHLLKSNCLITSQPDWGSVQIRYKGKKLNREKLLRYLVS
                     FREHNEFHEQCVERIFCDLMQFAEPEKLTVYARYTRRGGLDINPFRSNFEEVPENLRM
                     ARQ"
     gene            complement(3202..3750)
                     /gene="gmhB"
                     /locus_tag="PXE92_000563"
     CDS             complement(3202..3750)
                     /gene="gmhB"
                     /locus_tag="PXE92_000563"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HDL5759842.1"
                     /translation="MGKKAIFLDRDGTINIDHGYVHQIDDFQFIDGVGKALKQLQDKG
                     YLLVLVTNQSGIARGYFSEAQFMQLTEWMDWSLDEDYGVVLDGIYYCPHHPEGKGEYR
                     KDCDCRKPKAGMFTQAIQDLNIDPSQSYMVGDKLEDILAAEAAGVKTKVLVRTDKAVT
                     EEGQAKADLVLDSLVDLVKYIK"
     gene            complement(3750..4217)
                     /gene="bcp"
                     /locus_tag="PXE92_000564"
     CDS             complement(3750..4217)
                     /gene="bcp"
                     /locus_tag="PXE92_000564"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDL5759843.1"
                     /translation="MNILQAGDKAPKFTLQNQADEPVSLSQFAGKKVLVYFYPKALTP
                     GCTTQACGLRDSKSELDELNVVVLGISTDLPKKLAQFVEKKALNFTLLSDPDHQVAEA
                     FGVWGEKKFMGKTYDGIHRISFLIDEQGGGEQVFDKFKTGEHHQMIVDYLRGR"
     gene            complement(4304..4501)
                     /locus_tag="PXE92_000565"
     CDS             complement(4304..4501)
                     /locus_tag="PXE92_000565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759844.1"
                     /translation="MKFGYLNGVLEGKGKMRFDEAKLHAESEFEKYRIVQDRLFESDF
                     DKVLKEMLRSENQYRPSFSTT"
     gene            complement(4470..4952)
                     /locus_tag="PXE92_000566"
     CDS             complement(4470..4952)
                     /locus_tag="PXE92_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5759845.1"
                     /translation="MIDKQIRNSTAEFLIFTQQNGAENITVRYEDNEIWLTQKLIAQL
                     FDCSTDNVSLHLKNIFNSRELDPNSVTEDFSVTAADVKNYRTKHYNFDAVISIGYRVN
                     SVRATQFRQWATKVLRNFAQKGYVIDRQRMENGTFLNEDYFEQLLAEIREIWLSERRS
                     "
     gene            complement(5095..6252)
                     /gene="hemW"
                     /locus_tag="PXE92_000567"
     CDS             complement(5095..6252)
                     /gene="hemW"
                     /locus_tag="PXE92_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HDL5759846.1"
                     /translation="MNLILPPLSLYIHIPWCVQKCPYCDFNSHAQKGLIPEQEYIEHL
                     LADLSQDLTAYRVAIGDRKLYSIFIGGGTPSLFSAEGIAYLLIEVEKRIAFEPNIEIT
                     LEANPGTAEAERFLGYAQGGVTRISMGIQSFEPEKLLKLGRIHDANEAKQAIKFAQNS
                     AKSGLQSFNIDLMHGLPNQSVKQALADLETGISLNPPHLSWYQLTIEPNTMFYYRKPT
                     LPDDDELWDIFEQGHQLLTNAGYEQYETSAYAKKGYQCRHNLNYWRFGDYLAIGCGAH
                     GKISYPTGEIYRFSKIKHPKGYMRGEYRYSQDLIELDDRPFEFFMNRFRLLEATPKQE
                     FEWFTGLDREVVRPTIDWALNQNYISETATHWQITQHGKLFLNELLEGFLE"
     gene            6474..8057
                     /locus_tag="PXE92_000568"
     CDS             6474..8057
                     /locus_tag="PXE92_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5759847.1"
                     /translation="MKKQFEHNESRRGFMKLIAGVGAGMAFSGTLGTFTPKAFAAPAA
                     GSTIEAGIAYPISTGFDPLTSSGASSMAANLHIFEGLVDLHPATRKPYLALAAAEPEK
                     IDDVTYRITLRDGAKFHNGNPVTTEDVVYSFERVLDPAKASLFAQFIPFIDTVKKVDD
                     KVVEFKLKYPFALFKERLTIVKIVPKAVVEAGQAAFDANPVGTGPYKFVSATKDDRIV
                     FEAFADYNGGYPAQVEKMTWFLLSDDAARVTAQESGRVQAIESVPYLDAERLKRKGTV
                     ESVQSFGLLFLMFNCEKAPFNNPKVRQALHYGLDTQKLIDVVFLGNAKAATSYVQDTH
                     PDYVKANSQYDFDKAKAEALLAEAGVTELKFELLATDHSWVKECAPLILESWNSLKGV
                     KVSLKHLQSGALYGTHVDKGAYEVVIAPGDPSVFGNDLDLLLSWWYRGDVWPKRRFRW
                     SETAEYAEVQKLLDEAAKNPAASKEAWAKAINIIAEQVPLYPIIHRKLPTAWNDKALT
                     GFQPLPTTGMSFIGVGRAK"
     gene            8269..9222
                     /locus_tag="PXE92_000569"
     CDS             8269..9222
                     /locus_tag="PXE92_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5759848.1"
                     /translation="MEIILRLLWRRLMALPVMILGVTALVFIVLQFTPGDPATVALGE
                     SASEAAKEIYREQHGLNDPLLVQYFRFLGNLFVLDFGMTTPPEQPIVDMIAKAFPLTL
                     QLTFIGVFLAAIVSFTLGVTAALYRDTWIDQLIRLISVAAVATPSFWLGILLIQYFSL
                     KLDWLPSGGFIPFSEDPKGYVNSMVLPSLALAVPVCASLIRVVRTTMVEEMDKDYVRT
                     AIGNGVPYSTVIRHNVLRNALITPVTVLGLRVGYLLGGAVVIEQIFDLPGMGKLIFNG
                     IVNHDLNLVQGVVLTIAFTFVLVNIIVDILYLLINPKIRSL"
     gene            9224..11194
                     /locus_tag="PXE92_000570"
     CDS             9224..11194
                     /locus_tag="PXE92_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/oligopeptide/nickel ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HDL5759849.1"
                     /translation="MFRQGLAARLASGGARFRALSTSSKIALLFIVFIALVAIFAPLV
                     APYDPLQTLRPVQAPSGDYLFGTDRLGRDIFSRMVWGARTSLFIGLGAVGVAILFGSI
                     LGATAATADKFGNEVIMRFMDILMAFPGIALAAVLLATFGNSVPVIIVTIAVVYTPQL
                     ARVVRANVVSQWEEDYVRAERVIGGSRTYILLKHVVRNTAAPVLVFATVMVADAIVFE
                     ASLSFLGAGVQPPFPSWGNILSEGRNLVLSGFWWATTFAGIMILLTVLALNILAEGLT
                     DALVNPKLKRSTQSKEDVAKPLATDVQEAMSETLALKRYLLKLHEKETTRTDRMQLNS
                     TAKPILQVKNLSIRFPNRYGETPLVDNISFTVHEGETMGLVGESGCGKSITAFSIMGL
                     LPKTAKITGEILFTDRSGKQHNLLESADLNALRGHEISMIYQDALSALNPSMRIKDQM
                     AQLISRGGKQSAETLLQWVKLDPEKTLNRYPHELSGGQRQRVLIAMALAREPKLLIAD
                     EPTTALDVTVQAEVIKLLNELREKLGFAMVFVSHDLALVAQIAHHITVMYAGQVVETA
                     PTTPLLANPTHEYTRGLLGSVLSTELRAERLYQIPGSVPSPFDFAKGDRFASRSLRPD
                     ANPEQHLKLVPTGDHPQHFWASHLEDPQSKEA"
     gene            11209..12015
                     /locus_tag="PXE92_000571"
     CDS             11209..12015
                     /locus_tag="PXE92_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5759850.1"
                     /translation="MSMKFIKEQPIIELSNIVVQFASRDGTLFNPKKFTAVNDVSLAI
                     HAGETVGLVGQSGCGKSTLASVMIGLQKPTSGTVKFNGLEMKYGSAEARKYFGSQVSV
                     IFQDPATALNPRMRVLDILKDPMDIHNILQPQEREKRVYDLLSRVGLPRSAALVEPTR
                     LSGGQKQRVAIARALALNPKLIVADEPTSALDVSVRAQVLNLLADLKKELNLAMVFIS
                     HDLQTVHQVSDRIVVMNGGKIVEMGDASDVFERPTQEYTRTLIEAAPSLL"
     gene            12078..13664
                     /locus_tag="PXE92_000572"
     CDS             12078..13664
                     /locus_tag="PXE92_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDL5759851.1"
                     /translation="MIQITQTINIDLLIVGSGIAGLSAAVEAKEKGINTLLISKSTIG
                     SGASYFPLKATLGIQVTGDEADKIHFKEDIENIGKGKINPNVVQAYIEDSPQAIELLH
                     RIGFQPWKRNDNRPACFAKYPRPIYLIKDWRESALRAKQILQEQHIAFYENATLLHIV
                     TDNNQVQGAVFSLTTSGQISYIFCKTKHLILAAGGIAGLYKDNLYPADVIGSLHYVAQ
                     QAGATLVNLAFIQFIPAFVEPKYKVLFGEHTLKYVTQITDSKGNNLFPHLNAEQFAKM
                     VLERSHYAPFSLDFAGVEFDLVMMKHLLENPHEKGIYLKYSPKLYEDTEEFYTVYLNW
                     LKNEVGIDLVQDKIAIKPFAHSCNGGIQINQWGESAVKGLFAIGEISHCIEGANRMGG
                     NSVGGGLVFAKRAVSEIVRSLEQNDLQKNSEISPLAMAEKALNQLANSTANLELTASE
                     VLSTIREKMALYANVYRTRSNLKLLLEELNRLEQEFDPIYHAQYQGIEIYNALKTAQL
                     VVNQMLNEQSLGAHYLDEQN"
     gene            13710..15092
                     /gene="nhaC"
                     /locus_tag="PXE92_000573"
     CDS             13710..15092
                     /gene="nhaC"
                     /locus_tag="PXE92_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL5759852.1"
                     /translation="MNNYLLKLKPMTAVILSLLTVFILGFTMIGLGWVPQISILAVIV
                     MLLLFGLINKIPFKNMQEGMASGLMSSIGAVYLFFFIGLLVSALMMSGAIPTLMYYGL
                     SVISPELFYISAFALSSVVGIALGSSLTTTATIGVAFIGMASAFGANPAIVAGAVVSG
                     AFFGDKTSPLSDTTTIAASVVGIDMFAHIRNMLYTTIPAWILTALFLWFLTEPTDAQN
                     LANIENLKTNLQETGLIHGYSLLPFVTLILMAIKRVNSIYIIVTTVTLSLIITYIHSS
                     PTLEQLGNYFFTSYKPVEGVDLGEVASLVSRGGINSMFFTITIVLLALSLGGLLQILG
                     ILPALLNGISGFLTSTGRVTLVVASTAVGINVLIGEQYLSLLLSGNTFRSTYERLGLE
                     VKNLSRTIEDAGTVINPLVPWGVCGVFISSVLNVPVLDYLPYAFFCYICLILTLIFGF
                     TGVTISKKAN"
     gene            complement(15135..16331)
                     /gene="ispC"
                     /locus_tag="PXE92_000574"
     CDS             complement(15135..16331)
                     /gene="ispC"
                     /locus_tag="PXE92_000574"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDL5759853.1"
                     /translation="MKKLVILGSTGSIGKSTLSVVEHNPNPNQYEVFALVGGKNVELM
                     LEQCRQYQPTFAAMDDEKSAQALKTALATLGSKTEVLAGQAAICELAAHSEVDMVMAA
                     IVGAAGLLPTLSAVKAGKTVLLANKESLVTCGQIFIDEARKSGAKLLPVDSEHNAIFQ
                     SLPPEAQQKVGFCPLAELGVSKIILTGSGGPFRTKPLNEFDAITPAQAVAHPNWSMGK
                     KISVDSATMMNKGLEYIEARWLFNATAEEMDIIIHPQSIIHSMVRYIDGSVIAQMGNP
                     DMCTPIAHTMAYPNRINAGVPPLDFFKLKELTFIEPDFARYPNLKLAIEAFAEGQYAT
                     TAMNAANEIAVEAFLNEQIRFTDIVNVNRTVVENIAPIQVSEIADVLHIDKLARELAK
                     QAVLQL"
     gene            complement(16450..18648)
                     /gene="relA"
                     /locus_tag="PXE92_000575"
     CDS             complement(16450..18648)
                     /gene="relA"
                     /locus_tag="PXE92_000575"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP diphosphokinase"
                     /protein_id="HDL5759854.1"
                     /translation="MVAIRYSHQLEPNNFELSSWCASLNMSPVTFEQIHNAWSYAQEK
                     LDTDYSLMWYGIEMVEVLHGLNMDDDSLVAAMLFPLVKHNVIDLVQLKEDFSNDIKNL
                     VKGVLEMENIRQLSANNVSDLQIDNIRRMLLAMVDDFRCVVIKLAERIAYLRDSNHHS
                     EEDTVLAAKECSHVYAPLANRLGIGQLKWELEDYCFRILHPVSYTQIAKFELGERRVD
                     RERYIANFVADLTACLSPEIKNVQIYGRPKHIYSIWKKMQKKRLRFNQLFDIRAVRVI
                     VPTLEDCYTALGIIHTKYTHLPEHFDDYIANPKPNGYQSIHTVVLGEGEKTIEVQIRT
                     QQMHDDAELGVAAHWKYKEGATAGRSGYEEKIVWLRKLLEWQNDLADSGDMVAEMRSQ
                     IFDDRVYVFTPRGEVIDLPQKATPLDFAYAIHSEIGHRCIGAKVAGRIVPFTYHLQMG
                     DQVEIITQKEPNPSRDWLNPNTGFVNTGKARSKIIAWFKKLDREKNIPIGKEALEAEM
                     EKFGFTLKQIEEYALPRYNLKQFDDLYAGIGGGDIRLHQLMHFLQSKLIKPTAEQEDE
                     AVLKQVNKNTNQPKPSKGYVIVEGVGNLMHSIARCCQPIPGDEIVGYITQGRGISIHR
                     ADCEQLFELQSLNPERVVEADWGEGYTSGLSLTIRVIANDRNGLLRDVSAIMANEKVN
                     VLGVSSRTDVKRSLATIDMEIQLNNVEILNKLLARIAQLDDVIEAKRLSS"
     gene            18902..20209
                     /locus_tag="PXE92_000576"
     CDS             18902..20209
                     /locus_tag="PXE92_000576"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDL5759855.1"
                     /translation="MTILALGINHKTASVGLREKVAFVDDKRKLALEQIQTSGLAESV
                     VILSTCNRTELYFHQPNISPREESEENIQWREQCFRWFAQIHQLDESELRECLYFKQN
                     LEAANHLMKVASGLDSLILGEPQILGQVKQAYQYSEDFYQHQQKAMSTKLSRLFQRTF
                     ATAKRVRSETEIGSQAVSVAYAACGLARQIFDNFGKLRFLLVGAGETIELVARYLIQH
                     GAKNIMLANRTHIRAEMLAEKLNAPMQILSLSALQLGLNQADVVISSTGSPDTLISKE
                     MVEIAQKQRQFDPLLLIDIAVPRDIDEKAGDLEGVYAYSVDDLQNIIQRNMAQREEAA
                     KQAAEIVKEESKAFFEWLKQQQSSDLIKRYRQDAEQTRQELLEKALQAISQGQDSQKV
                     LSELSYKLTNQLLHAPTQALQAMAKSGNSTGLQSFSRALRLEE"
     gene            20394..21929
                     /gene="der"
                     /locus_tag="PXE92_000577"
     CDS             20394..21929
                     /gene="der"
                     /locus_tag="PXE92_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDL5759856.1"
                     /translation="MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGH
                     ANIAGYDFIVIDTGGIDGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGI
                     AQYLRQREKTTVVVANKTDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLA
                     PLGEQLNAEQFNQEQAGENAKNVANEETDEWDTEFDFENEEDAALLDEALAEEAEESI
                     EDKNIKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIID
                     TAGVRKRGKVNLAVEKFSVIKTLQAIQDANVVLLTIEAREGISDQDLSLLGFILNAGR
                     SLVIVVNKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAY
                     ACATQKTSTSMLTRILRMAADEHQPPLVNGRRVKLKYAHPGGYNPPIIVIHGNQVEKL
                     ADSYKRYLSNYFRKSLKIIGSPIRILFQEGNNPFAGKKNKLTPSQLRKRKRLMKFIKK
                     SKK"
     gene            22025..23452
                     /gene="hldE"
                     /locus_tag="PXE92_000578"
     CDS             22025..23452
                     /gene="hldE"
                     /locus_tag="PXE92_000578"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HDL5759857.1"
                     /translation="MMMQYSPKFNNAKVLVLGDVMLDRYWFGATNRISPEAPVPVVKV
                     QDIEERAGGAANVAMNIASLGVPVTLHGLIGDDDAGRALDKLLNSHQIQNHCVVINSH
                     PTITKLRILSRHQQLLRLDFEEGFHNVDSTALLAKLSQEITAYGALILSDYGKGTLES
                     VQQMIQIARNAKVPVLIDPKGTDFERYRGATLLTPNMSEFEAVVGHCKDEDEIVSKGL
                     KLIADYDLSALLVTRSEKGMTLLRPNHEPYHLPTQAKEVYDVTGAGDTVISVLATAIA
                     DGRAYEEACYLANAAAGVVVGKLGTSTVSPVELENAIHQRTATGFGVVSEAELKAIVE
                     EAKKRGEKIVMTNGCFDILHPGHVSYLENARKLGDRLIVAVNTDASVKRLKGEARPIN
                     DLAARMAVLAGLASVDWVVPFDEDTPQRLISEILPDLLVKGGDYKPEEIAGSQEVWAN
                     GGDVRVLNFENGCSTTNVIKKIQAL"
     gene            23466..24020
                     /gene="pyrR"
                     /locus_tag="PXE92_000579"
     CDS             23466..24020
                     /gene="pyrR"
                     /locus_tag="PXE92_000579"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HDL5759858.1"
                     /translation="MAREKIIIDTEQFQRTISRISHQIIEKHGDLQDVVIVGIKRRGA
                     EIAELIQKRIEDLAQTRLPYMALDITFYRDDLDLIYQDPVFMGADNQLNLNGKKVILV
                     DDVLFTGRTIRAALDALLDFGRAARIELVIFVDRGHRELPIRADYVGKNIPTAKNEQI
                     QVQTLSYDGINQVVLVPAANKESA"
     gene            24093..25043
                     /locus_tag="PXE92_000580"
     CDS             24093..25043
                     /locus_tag="PXE92_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL5759859.1"
                     /translation="MKMKLVKSLFAVAVATMSLTQTAHAFEERVVALVNDTPIMQSQV
                     QRVLGKKKATETAQRAAIDQVIDDMLVQQAMKEAGVKVSPAAVNQAVENVAIQNGITY
                     GQLLDALDYQGITLEQFKRNIAQQMAMEQVRHISISKSIQVAPQQVQALAKELMAKDK
                     AAGKLKTVSGKEHRISHILLKTNPILNDAQAKAKLSSLTTDINSGKISFEEAAKTHSV
                     DYASGADGGDLGFNFLEIYDPAFANVASKIKPNQISAPFKSQFGWHILKVTDTRNGDR
                     TEDAYHQRAYQQLVNKQAEEASKDWVKALRKTANIQYVGQ"
     gene            25105..25971
                     /gene="rsmA"
                     /locus_tag="PXE92_000581"
     CDS             25105..25971
                     /gene="rsmA"
                     /locus_tag="PXE92_000581"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDL5759860.1"
                     /translation="MSSTNSKKHLGHTARKRFGQNFLHDMNIIHSIVSAINPKNGQFL
                     LEIGPGLGALTEPVAELVDKLTVVEIDRDLAERLRHHPFLNQKLTIIEQDALRFNFRD
                     YFNQLNLDEDSVRVFGNLPYNISTPLIFHLLTFHDLIQDMHFMLQKEVVKRLCAAPNS
                     KAYGRLTIMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPYNQLPYPAKDVYWLNR
                     VTTQAFNQRRKTLRNALSTLFSAEQLDALGVDLTARAENLTIADYVRLANWLHDNPPA
                     IDTTEELVDEDC"
     gene            complement(26082..26711)
                     /gene="upp"
                     /locus_tag="PXE92_000582"
     CDS             complement(26082..26711)
                     /gene="upp"
                     /locus_tag="PXE92_000582"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDL5759861.1"
                     /translation="MKIVEVKHPLVKHKLGLMREAEISTKDFRELANEIGSLLTYEAT
                     KDLEMESVEINGWSGEKIAVERIKGKKVTVVPILRAGLGMMDGVLEHIPSARISVVGI
                     YRDEETLKPVPYFSKLANDVDERLAIITDPMLATGGSMVATIDLLKKAGCKQIKVLVL
                     VAAPEGIKVLEAAHPDVELYTASIDSHLNENGYIIPGLGDAGDKIFGTK"
     gene            complement(26736..28421)
                     /gene="fadD"
                     /locus_tag="PXE92_000583"
     CDS             complement(26736..28421)
                     /gene="fadD"
                     /locus_tag="PXE92_000583"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HDL5759862.1"
                     /translation="MEKIWLNNYPPYSPKTIETDQYESLVEMFEAAIQRHPDIPAYIN
                     MGQVLTFRKLEERSRSFAAYLQNELRLKKGDRIALMMPNLLQYPIALFGALRAGLVVV
                     NVNPLYTPRELEHQLNDSGAKAIVIVSNFAATLEKIVFNTEIKHVILTRMGDQLSFGK
                     RTLVNFVVKYIKKLVPKYKLPHAVSFREALSIGKQRQYVKPNIVSQDLAFLQYTGGTT
                     GVAKGAMLTHQNLIANMMQAKWIVEPLLGNSANMIGLVPLPLYHVLALSMNCLLFIEL
                     GLTGLLITNPRDIPGFIKELKKYKVSVITGVNTLFNALLNHESFKEVDFSHLKLSVGG
                     GAAIQSSVAKRWHDLTGVHIIEGYGMTECSPLISATRGDSVEYSGSIGVPVPNTDIRI
                     VDDEGKEVPLGERGELVVKGPQVMQGYWNRPDETAQVLQDGWMATGDIVVMGDDLNLR
                     IVDRKKDMIIVSGFNVYPTEIEEVISQNPKVNEVVAIGVPSEASGESIKIFVTKKDES
                     LTRDELRTYCRQFLTGYKIPRDIEFRDELPKSNVGKILRRVLRDEELAKVNKA"
     gene            complement(28399..28863)
                     /locus_tag="PXE92_000584"
     CDS             complement(28399..28863)
                     /locus_tag="PXE92_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR reducing system RseC family protein"
                     /protein_id="HDL5759863.1"
                     /translation="MMIEQATVVEYQNGVAIVQCYAKSSCGGCVAQSACGSKALSALA
                     GEKIDPRFRIEVDEPLKVGDKVELGLAENILLKSVFLIYGIPLLVLVMTAVGFSQFFA
                     NELIVLFIMLLSTGITFWAVRKLIHKHSKQANFSPIFLGKVLGDYNGKNMAK"
     gene            complement(28860..29843)
                     /locus_tag="PXE92_000585"
     CDS             complement(28860..29843)
                     /locus_tag="PXE92_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucB/RseB C-terminal domain-containing protein"
                     /protein_id="HDL5759864.1"
                     /translation="MLFKIKKYLLLFWVISACYTFAWAESTIKTPLAYLTAMSEAHKK
                     STYELVYILQQGSDTESFRLRHAFTHNKEYAQLLNLDHSREEIILKNNKVSYLGYNFR
                     PFSLNSSQILDNLPNVLYTDYANLKGYAFLDAGKDRISDRITKVIRMKPNDTLRYAYI
                     LWIDEETHLLLKSQVLNMDNLVLEEFRVLQLYQSPELDRIANVIESLMLPTLTTVKKE
                     EFPKSDGWQVKWLPTGFRLIQQQTVTGATYQVESEYVDSRVYSDGLSTLTIYIMPSQG
                     VSFNEYAWQQGKLTILNQTINDRDIVIIGDVPLQSAKQIMNNIGFKEGAQP"
BASE COUNT         8636 a         6429 c         5927 g         8878 t
ORIGIN      
        1 ttgcttatgc tgcaatgcaa agcgtatttt ttatctactt acattctaca aaggctttga
       61 aaccagccaa attgcaactg cattttcttt gttggtcttt accagccaag cattttccct
      121 ttttgcaggt tcttggggtg atagttttgg acgttaccct atcatgatgc ttggctgttt
      181 gctcgatgcc ctagcttaca ttttattact gacaacaaaa aattaccctc tgctattact
      241 tgctaccttt ttcttcgggc tcggtagcac cttatttagt accaatgcga gagcattctt
      301 attagccaat attcaagata ccggagatag ttaccaactc aaaactaagg ctcaaggtaa
      361 atttctgaag gtatcaagcc tgtcagcgat ggtagcacca ttacttacta ttccatttat
      421 tttctaccgt aaagcagaat ggcttatttg gattagctgc tgcattgaaa ttattatgct
      481 attcgttatg tttaaaaccg cacccaaaac acatgaatgt gcaaatgggc aatgcgaacg
      541 ctttaaattt ggtgcattaa aaggaatact aaatgaacaa tttatttttg tacatttatt
      601 actttttatt ccgcttggtc taggaagtgc attttatatt atattcccct atatattcac
      661 caatcttctg gataaaccag aattagtctc tgtctcattc tttgtgaata atttaattgc
      721 agtgttattg caatctgatt tttcacgaaa attaaatctg acagtacata aacttattta
      781 tattgcacca atactgatta tacttcaaat aatgccttgg ttttatgcac tccaatggct
      841 ttcaaccatc actgcatttc tctatttagt gatttttgcc actattaccg tgtatgcgaa
      901 tacggcacta tctaatatgc tagtgaaatt agacaatggt aaaaaccaag gcttaatgtt
      961 tggaagctct aaattaattt tagctattac cactctcgga gtaatgaatg tattacctta
     1021 cattttctta atctaagcag ggtaaatcac gcccaaactc acggcttttt ttgctcctgt
     1081 cacgctaggc atattactgg gtaaattatg gattcgctgg taagctaacc aagcaaaagc
     1141 ggcagcctct acataatcaa tatctaaacc aaattctgta gtggttgtaa cctcccactc
     1201 gggaagtaaa gcagaaatcc gttccattaa taacggattt cttgacccac caccacaaac
     1261 taaaagcaag cgaggcagag agctttcaaa gcgtaataac tcattggcaa tactttgagc
     1321 agtaaattct gccagcgtgc gttgcacatc ttgtggctga caagcggtca aattttccaa
     1381 tttttttgca agccacgtta aattaaacag ctcccgccca gtgcttttag gcggggcttt
     1441 agcaaaaaac gactcgtcta ataacgtcgc taacagttca gtattgagct tgcccgttct
     1501 cgcccattcg ccgtttttat cgtatctttt gccttgatgt tgttcgatcc aactatccat
     1561 caaagtattt ccggctccta catcataacc aactgtaggg gaattgggat ttaacaccga
     1621 aatattgctg atgccgccaa tattcagcac cactgttaga cgatttggat cgctaaaaat
     1681 agcttgatga aatgccggca caagcggagc cccttgccca cctactgcca tatctttacg
     1741 ccgaaaatca gcgatagtgg taataccggt ttgctctgcc accaaattca tatcgccaat
     1801 ttgggtggtg aagggatact cagaatccgg tgaatgccac accgtctgcc cgtgacaacc
     1861 tatggcttga atatcttctg cttttagctg atttttcgct aaaaacgcat tgatcgtttc
     1921 tgcataaagc aagcctaaac ggtgatcaat ttcccccagt ttttggagat tggtttcgcc
     1981 ggttttaagt aacgcagaaa tatccgcccg taattcctcc ggcattggaa aaaaatcaca
     2041 agcggtcatt ttcggtggat tttttgcaaa atccagcaaa gcaatatcca ccccatcaag
     2101 gctcgtgccg gacattacgc ctatatagta atttgggcta tattcattca tcataaaaat
     2161 caacatctgc tatttgttac ttttctttgc tttgccaaag aaaagtaacc aaaagaaagg
     2221 caacccgagc ttcaccgcta tcctcgctta gtttgaattg gcttaacggc aaatttacat
     2281 tcgctccgct cagagtaaat ttacctacca attcaaacac gctcaggcgg ttcagacggg
     2341 aacaaaaaac aacaaaatca ttggcgtgcc attcttagat tttccggcac ttcctcaaaa
     2401 ttcgatctaa acggattgat gtctagcccg cctcgtctgg tgtagcgtgc gtaaactgtt
     2461 aatttttccg gctcggcaaa ttgcattaaa tcacagaaaa tgcgttccac acattgttcg
     2521 tggaactcat tatgctcacg gaacgacact aaataacgta acagtttttc acggtttagc
     2581 tttttgcctt tgtagcgaat ttgcacactt ccccagtcag gctgtgacgt aattaagcag
     2641 ttagatttga gcaaatggct gactaaggtt tcttccacca actcatcttc tgcaatgttc
     2701 tctaaataat gagtcgaaaa cgcataactg tcgatttgaa tatcttgctc atcaatgcaa
     2761 tcgcctgcaa aatcaactat cggctgttgc gtgtagtgtg ataattggta aatttttacc
     2821 gaaacctgac cgcttgcaca gcgagccaga tccgcttgaa tcgttttccc aacttcttct
     2881 attgagctaa atttggtttg gttaaaactg ttcaaataga gcttgaaact tttcgattca
     2941 attaagtttt cgctcttaaa atcaatggcg acatctgcaa tcgctacttg cggtagccca
     3001 ttttggttca accaagatag ctcatagcaa gtccacacat cagcccctcg gttaaaaggc
     3061 tgctcttgtg taatgcctaa actatcacgg tttaatttac gaggaacagg ttgcaaaagc
     3121 gaggcatcat attcgctttt gtactcggtt ttttgcccta atttcagggc ggaaagggat
     3181 ttatcgttat aattcattgc tttatttaat atattttact aaatcaacta aactatctaa
     3241 caccaaatcg gctttagcct gaccctcttc cgtcactgct ttgtcagtgc gaaccagcac
     3301 tttggttttc acgccggcgg cttctgcggc aaggatatct tctaatttat cgcccaccat
     3361 ataagattgg cttgggtcga tgtttaaatc ttgaatcgct tgagtaaaca tacctgcttt
     3421 aggcttacgg caatcacaat ctttacggta ttcgcctttg ccttcggggt gatgtgggca
     3481 gtagtaaata ccgtctagta ccacgccata atcttcatcg agcgaccagt ccatccattc
     3541 ggttagttgc ataaattgtg cttcgctaaa atagcctcgg gcaatgccag attgattggt
     3601 taccagcacc aataaataac ctttgtcttg tagctgtttt aacgccttgc cgacaccgtc
     3661 aataaattga aaatcatcaa tttgatgcac atagccgtga tcgatattaa ttgtgccgtc
     3721 acggtctaaa aaaatggctt tttttcccat tagcgacccc gtagataatc cacgatcatt
     3781 tggtgatgtt cgccggtttt aaatttatca aacacttgct cacccccccc ctgctcatca
     3841 attaaaaaac tgatgcgatg aatgccgtca taggtttttc ccataaattt cttttcgccc
     3901 catacaccaa aggcttctgc aacttggtga tccgggtcag ataataaggt aaaattaagt
     3961 gcttttttct ctacaaattg agctaatttt ttcggtaaat cggtgctaat tccgagaaca
     4021 accacattga gctcatcaag ttctgatttg ctgtcacgca gtccgcacgc ttgcgtagtg
     4081 caaccgggtg taagagcttt cggataaaaa taaaccagta cttttttgcc ggcaaattga
     4141 gagagagaaa ccggctcgtc agcctgattc tgaagggtaa atttaggggc tttatcgcct
     4201 gcttgtaaga tattcatttg taatttttcc ataaaaaata accgcttgca ttatacacgg
     4261 caagcggtca aacttggcaa aaaatttgca aaatgcggtt gttttatgtt gttgaaaatg
     4321 atggacggta ttgattttcc gaacgcaaca tttctttcaa taccttgtca aaatcgcttt
     4381 caaataatct gtcttgaaca atgcggtatt tctcaaattc gctttctgcg tgcaatttcg
     4441 cttcatcaaa acgcattttg cctttgccct caagaacgcc gttcagataa ccaaatttca
     4501 cgaatttctg ccagcaactg ctcaaaataa tcttcattta aaaatgtacc attttccatt
     4561 ctttggcggt caatcacata gcctttttgg gcgaaattcc gtaatacttt agttgcccat
     4621 tggcgaaatt gtgtcgcccg caccgagttt accctatagc ctatcgaaat aacggcatca
     4681 aagttgtagt gtttggtacg ataatttttg acatctgcgg cagttaccga gaaatcctcg
     4741 gtaactgaat ttggatcgag ttccctacta ttaaaaatgt tttttaaatg caaagaaaca
     4801 ttatctgttg agcaatcaaa aagctgagca attaattttt gcgtaagcca aatttcgtta
     4861 tcttcatagc gaacggtaat attttctgcc ccattttgtt gagtaaaaat caaaaattcg
     4921 gcggtactat tacggatttg tttatcgatc ataagctctc cttattgtga aggctatgct
     4981 actaaacact gtttttttgt ctagtaaaaa atgaggattt ttcgacgcag atcacaaaaa
     5041 acgcctgtaa tttagcatta caatgcggtc tttttttagt cgtttttttg caaattattc
     5101 caaaaatcct tccagtaatt catttaaaaa caatttaccg tgttgggtaa tttgccaatg
     5161 ggttgcggtt tcggaaatat agttttggtt taacgcccaa tcgattgtcg ggcgaacaac
     5221 ttccctgtct aaccctgtaa accattcaaa ttcttgtttt ggtgtcgctt caagtaatct
     5281 aaagcggttc ataaaaaact caaacgggcg gtcgtctaat tcaatcaaat cttggctgta
     5341 gcgatattca cctcgcatat aacctttcgg gtgtttgatt ttgctaaagc gataaatttc
     5401 cccggtcgga tatgaaattt tgccgtgagc gccacaacca atcgccaaat aatccccaaa
     5461 tcgccaataa tttaaattgt gtctgcattg gtagcctttt ttggcataag ccgaggtttc
     5521 atactgctca tagccggcat tcgttaaaag ttgatgccct tgctcgaaaa tatcccataa
     5581 ctcgtcatca tcaggcaagg ttggcttacg ataatagaac atcgtattcg gctcaatcgt
     5641 gagctgatac cacgataaat gcggtggatt gagtgaaatc cctgtttcta aatccgccaa
     5701 ggcttgttta accgattggt ttggtaagcc gtgcattaaa tcaatgttga aactttgcaa
     5761 gcccgatttt gcagaatttt gggcaaattt aatcgcttgt tttgcttcat ttgcatcgtg
     5821 aatccgtcct aatttcaata atttttccgg ctcaaaactt tggattccca ttgaaatgcg
     5881 ggttacgcca ccttgtgcgt aacctaaaaa tcgctctgcc tctgcggttc ccgggttcgc
     5941 ttccagtgta atttcgatat ttggctcgaa tgcaatccgt ttttctactt caattaataa
     6001 ataagctatc ccttccgctg aaaataagct cggggtgccg ccgccaataa aaatagaata
     6061 taatttacga tcacctattg ccactcggta agcggtcaaa tcttgggata aatctgcaag
     6121 taaatgttcg atatattctt gctcgggaat taatcctttt tgagcgtgcg agttaaaatc
     6181 gcaataaggg catttttgca cgcaccaagg gatatggata taaaggctta aaggcggtaa
     6241 aatcaggttc actgtcaatt tttcatttat gattaaattg gcgaataata acgaaaagca
     6301 cgtgaagtga aaagcaaaga ttttcgtgag ctagatcaca aattcaataa ttcttgcttt
     6361 accactttga cattaatgat atgataaatt caattcaaaa aagtgcattt tttgataaat
     6421 tcacttcagc aaataatacc gcccctatca taaaaactta aaggagcttt aagatgaaaa
     6481 aacagtttga acacaacgaa tcccgccgtg gttttatgaa actaattgca ggtgtcggtg
     6541 ccggtatggc atttagtggc actttaggta catttacacc taaagcattt gcagcccctg
     6601 ccgccggctc aacgattgag gccggtatag cttatcccat atcaaccgga tttgacccgc
     6661 ttacctcaag cggtgcatcc tcaatggcgg caaacctcca tatttttgaa ggcctcgtgg
     6721 acttacatcc agccactcgc aaaccatatt tagcattggc agcagcagag cctgaaaaaa
     6781 ttgatgatgt aacctatcga attactttac gtgacggggc taaattccac aatggtaatc
     6841 cggttaccac tgaagacgta gtttactcat ttgaacgtgt attagaccca gctaaagcat
     6901 cacttttcgc acaattcatt ccatttattg acactgtgaa aaaagttgat gacaaagtgg
     6961 ttgaattcaa attgaaatat ccatttgcgt tattcaaaga gcgcctaacc attgttaaaa
     7021 tcgtaccaaa agcagtggta gaagccggtc aagctgcatt tgatgctaat ccagtgggga
     7081 ctggcccata taaatttgta tccgcaacta aagatgatcg tattgttttc gaagcatttg
     7141 cagattataa cggtggctac ccggcacaag tcgagaaaat gacttggttc ttactttctg
     7201 atgatgccgc tcgtgtaacc gctcaagaat ctggccgtgt tcaagcaatt gagtctgtgc
     7261 cttacttaga tgcagaacgc ttaaaacgta aaggtaccgt tgagtcagta caatcattcg
     7321 gcttactgtt cttaatgttt aactgtgaaa aagcaccgtt taacaacccg aaagttcgcc
     7381 aagcgttaca ttatggctta gatacccaaa aattaattga tgtggtgttc ttaggcaatg
     7441 caaaagctgc tacatcttac gtgcaagata ctcacccgga ttatgtgaaa gcaaattcgc
     7501 aatatgattt cgataaagcg aaagccgaag cgttattagc agaagcgggt gtgacagagt
     7561 taaaatttga attgttggca accgatcact cttgggtgaa agaatgtgcg ccattaattc
     7621 ttgaatcgtg gaacagctta aaaggcgtga aagtttcact caaacactta caatcaggtg
     7681 cattatatgg cacacacgtt gataaaggtg catacgaagt tgtgattgca cctggcgacc
     7741 catcagtttt cggtaatgac ttagacctat tattaagctg gtggtatcgt ggtgatgtat
     7801 ggccgaaacg tcgtttccgc tggtctgaaa cagctgaata tgcagaagta caaaaactgc
     7861 ttgatgaagc ggccaaaaat cctgctgctt ctaaagaagc ctgggcgaaa gcaatcaata
     7921 ttatcgctga acaagtgcct ctttacccaa ttattcaccg taaattgcca actgcgtgga
     7981 atgataaggc attaacaggt ttccaaccat taccaacaac aggtatgtca tttatcggtg
     8041 ttggtcgtgc taaatagtcg taacggctag ctaaatgcaa gcggtaatat tttacaaaaa
     8101 atttaccgct tgcataaata aaaatcaaaa tgatgtaata ttcgtcttat atcactcaga
     8161 attcttacca tttctatatt ttcatttata atcctacata tcactatatt agcttgtagg
     8221 taaacttaga tttaattttg gagtgtaact acactcaagg agaagaaaat ggaaattata
     8281 ctccgattat tatggcgtcg cctaatggct ctgccggtaa tgatcttagg cgtaactgcc
     8341 ttggtattta ttgttttaca attcaccccc ggagatccgg caaccgttgc tctcggtgaa
     8401 agcgccagcg aagccgctaa agaaatctat cgtgaacaac atgggttaaa tgatccattg
     8461 cttgtacaat attttcgctt tttagggaat ttattcgtat tagatttcgg tatgacaacc
     8521 cctccagaac agcctattgt tgatatgatt gctaaagcat tccctttaac attacagctt
     8581 acctttattg gggtcttctt agctgctatc gtctctttca cattaggtgt aacggcagca
     8641 ctttaccgtg atacttggat tgatcaatta atccgtttaa tctcggttgc cgctgttgcc
     8701 acaccttctt tctggttggg tattttattg attcaatact tctccttaaa attagattgg
     8761 ttgccttcag gcggttttat tccatttagc gaagatccaa aaggctatgt aaactcaatg
     8821 gttctccctt cactcgcttt agctgttcct gtatgtgcct cattgatccg tgtcgtgcgt
     8881 acaacaatgg tagaagaaat ggataaagat tatgttcgaa cagccatcgg taatggtgta
     8941 ccttactcaa cggtgattcg ccacaacgtg cttcgtaatg ccttaattac tccggtaaca
     9001 gtattaggtt tacgggttgg ttatttatta ggtggtgcag ttgtgattga acagatcttc
     9061 gacttaccgg gaatgggtaa attaattttc aacggtatcg tcaatcacga cttgaactta
     9121 gtgcaaggtg tagtattaac tatcgcattt actttcgtgt tggtgaatat cattgttgat
     9181 attctttact tgctcattaa tccaaaaatt cggagtttat aatatgtttc gccaaggatt
     9241 agctgctcga cttgcttcag gcggtgcaag atttagagca ttatcaacca gctcaaaaat
     9301 cgccttactc tttattgtat ttatcgcatt agtcgctatt tttgcaccat tagtagcgcc
     9361 ttatgaccca ctgcaaacgc tacgtccagt gcaagctcca agcggtgatt atttattcgg
     9421 tacagaccgt ttaggacgtg atattttctc gcgtatggta tggggagcaa gaacatctct
     9481 ctttatcggt ttaggtgcgg taggcgttgc gattctattc ggtagtattt taggggcaac
     9541 tgcggcaacc gccgataaat tcggtaacga agtgattatg cgttttatgg atatcttaat
     9601 ggcattcccg ggtatcgcat tagctgctgt attacttgcc actttcggta actctgtacc
     9661 tgtgattatc gtgactattg cggttgttta cactccccaa cttgcccgag tggtgcgtgc
     9721 taacgtagta tctcaatggg aagaagatta tgtgcgtgcc gagcgtgtaa ttggtggtag
     9781 ccgtacttat attctattaa aacacgttgt gcgtaatact gctgcaccgg ttttagtatt
     9841 cgcaacagtg atggttgctg atgccatcgt atttgaagca tcactttcat tcttaggtgc
     9901 aggtgtccag cctccattcc catcttgggg aaatatctta tctgaaggtc gtaaccttgt
     9961 attaagtggc ttctggtggg ctacaacttt cgcagggatt atgattttat taaccgtact
    10021 tgcgttaaat atccttgctg aaggcttaac cgatgcgtta gtaaatccaa aactaaaacg
    10081 ttcaactcaa agtaaagaag atgtcgcaaa accattggca acagacgttc aagaagcaat
    10141 gtctgaaact cttgcgttaa aacgttactt actcaaatta cacgagaaag aaacgacccg
    10201 tactgaccgt atgcaattaa actcaacggc caaaccgatt ttacaagtga aaaacttatc
    10261 aatccgtttc ccaaatcgtt atggtgaaac tccgcttgtt gataatatca gctttactgt
    10321 tcacgaaggc gaaaccatgg gcttagtggg tgaatctggt tgtggtaaat caatcaccgc
    10381 attctcaatt atgggtttat taccaaaaac tgcaaaaatc actggtgaaa tcctctttac
    10441 cgaccgttca ggtaaacaac acaatctttt agaatcagcc gatttaaatg cccttcgtgg
    10501 tcacgaaatc tcgatgattt accaagatgc attaagtgcg ttaaacccat caatgcgtat
    10561 taaagaccaa atggcacaat taatcagccg tggtggtaaa caatcagcag aaacattatt
    10621 gcaatgggta aaacttgacc cggaaaaaac gctcaaccgt tatcctcacg agttatctgg
    10681 aggacaacgt cagcgtgtat taattgcaat ggcacttgct cgtgaaccga aactattgat
    10741 tgctgatgaa ccaacaacag cattagacgt aaccgttcaa gctgaagtga tcaaattatt
    10801 aaacgaatta cgtgagaaac ttggatttgc aatggtattc gtgagccacg acttagcttt
    10861 agtggcacaa atcgctcacc acatcacggt aatgtatgct ggtcaagtgg ttgaaactgc
    10921 accaactacg ccattattgg caaacccaac acacgaatac acacgtggat tattaggctc
    10981 ggtactttct accgaattgc gtgcagaacg cctataccaa attccgggca gtgtgccttc
    11041 accatttgat tttgcgaaag gtgaccgttt tgcgagtcgt tcattaagac cagatgcaaa
    11101 ccctgaacag cacttgaaat tagtgccaac cggtgatcac ccacaacact tctgggcttc
    11161 acacttagaa gatccacaat ctaaagaagc ataaaggaga gcaatacgat gagtatgaaa
    11221 tttatcaaag aacagccaat tattgaactg tctaatattg ttgtgcaatt tgcttctcgt
    11281 gacggcacct tatttaaccc gaaaaaattc acggcggtaa atgatgtcag cctagcaatt
    11341 cacgccggtg aaacagtcgg tctggttgga caatctggtt gtggcaaatc tactttagcc
    11401 agtgtgatga tcgggcttca aaaaccaacc tccggcacag taaaatttaa cggcttagag
    11461 atgaaatatg gcagtgcgga agctcgcaaa tatttcggta gccaagtgtc agtaattttc
    11521 caagacccgg caaccgccct aaatccgcgt atgcgtgtgt tggatatttt aaaagatccg
    11581 atggatattc ataatatctt acaaccgcaa gaacgtgaga agcgggttta tgatttgctc
    11641 tctcgagtcg gtctacctcg ttcagcggcg ttggtcgagc caacccgatt atctggtggg
    11701 caaaagcaac gtgtagcgat tgctcgtgca ttggcattaa atccgaagct gattgtggct
    11761 gatgaaccaa cctctgcact tgacgtatcg gttcgagctc aagtactgaa cctgctggca
    11821 gacttgaaaa aagaactcaa tttagcgatg gtatttatct ctcacgactt acaaaccgtt
    11881 caccaagttt cagaccgcat tgtggttatg aacggcggta aaattgtgga aatgggcgat
    11941 gcttcagacg tatttgaacg cccaacgcaa gagtacaccc gaaccttaat tgaagcagca
    12001 ccatctttat tataattgtg ctttgtgcct acaagcggta aaatttttcg caaattttac
    12061 cgcttgtgtt tttatttatg atccaaatta cccaaaccat taacattgat ttattaattg
    12121 tcggctctgg catcgctggg ctttctgctg cagttgaggc aaaagaaaaa ggcattaata
    12181 ccttactgat tagcaaatct acgattggct cgggagcgag ctactttccg cttaaggcaa
    12241 cacttggcat tcaagtaacc ggcgatgaag ccgataaaat tcactttaaa gaagatattg
    12301 aaaacatcgg caaaggcaaa atcaacccta atgtggtaca agcctatatc gaagattcac
    12361 cacaagcgat tgaactactc caccgtatcg gctttcagcc ttggaagcgt aacgacaacc
    12421 gtccggcttg ttttgccaaa taccctcgcc caatttattt aattaaagat tggcgggaat
    12481 ctgccctacg agcgaaacag attttgcaag agcaacacat tgctttctat gaaaatgcta
    12541 cccttttaca catcgtcaca gacaataacc aagtgcaagg tgcggtattt tcgctcacta
    12601 caagcggtca aatttcctat attttttgca aaaccaagca tcttatttta gccgcaggcg
    12661 ggattgctgg gctgtataaa gataatctct acccggctga tgttatcggt tcacttcatt
    12721 atgtggcaca acaagccggg gcaaccttgg ttaatcttgc ctttattcag ttcattcctg
    12781 cctttgtcga gccaaaatac aaggtgctat ttggcgaaca tacattgaaa tatgtcaccc
    12841 aaatcaccga ttctaagggt aacaatctat ttccacactt aaatgccgag caatttgcaa
    12901 aaatggtgct ggaacgtagc cattatgctc ctttcagcct tgattttgcc ggcgtggagt
    12961 tcgatttagt gatgatgaaa catttgcttg aaaaccctca cgaaaaaggc atttacctta
    13021 aatacagccc caaactgtat gaagacacgg aagagtttta taccgtctat ttgaattggc
    13081 tcaaaaatga agtcgggatt gatttagtgc aagataagat tgcaatcaag ccgtttgctc
    13141 atagctgtaa cggcggcatt caaattaatc aatggggcga aagtgcagta aaagggctat
    13201 ttgcgattgg tgagatttct cactgcattg aaggggcaaa ccgtatgggt ggtaactcag
    13261 tcggcggtgg cttagtgttt gccaaacgtg cggtatcgga aattgttcgt tcgctagaac
    13321 agaatgattt gcaaaaaaac agcgaaatct caccgcttgc aatggcagaa aaagcattaa
    13381 atcagcttgc taattcaact gctaatctag aactaactgc cagtgaagtg ctttctacta
    13441 ttcgagagaa aatggcgtta tacgccaatg tgtaccgcac tcggagcaac ctcaaactac
    13501 tacttgagga attaaaccgt ttggaacaag aatttgaccc aatctatcac gctcaatatc
    13561 aaggcattga aatttacaat gcgttaaaaa ccgctcaatt agtggtcaat caaatgctaa
    13621 atgagcagag tttaggcgcg cactacttag atgaacaaaa ttagtctata atagccaact
    13681 tatttaaaaa taataaatta ggagtataaa tgaataacta cctacttaaa ttaaaaccaa
    13741 tgacagcggt catactttcg cttttgacgg tctttatctt aggttttaca atgattgggc
    13801 ttggctgggt gcctcaaatt tcaattctag ccgtgattgt aatgctgcta cttttcggct
    13861 taatcaataa aattccgttt aaaaatatgc aagagggtat ggcaagcggg ctgatgtcca
    13921 gtattggtgc ggtttaccta ttctttttta ttggattatt ggtttcagct ttgatgatgt
    13981 ctggtgcgat tccaacctta atgtattatg gcttaagtgt gatttcacct gaattatttt
    14041 acatttctgc attcgcatta agttctgtag taggtattgc gttaggcagt agtttaacca
    14101 caaccgccac catcggtgtt gcttttatcg gtatggcttc tgctttcggt gcgaaccctg
    14161 cgattgtagc aggtgcggtg gtttcagggg cgttttttgg cgataaaacc tctccacttt
    14221 cagacactac taccattgct gcttccgtag tgggcattga tatgttcgct catatccgta
    14281 atatgcttta taccaccatc cctgcgtgga ttttaacagc attattcctt tggtttttaa
    14341 ccgaacctac tgatgcacaa aatttagcaa atatagagaa cctaaaaacc aatttgcaag
    14401 aaacaggatt aatacacggc tactctttgc taccttttgt tacgttaatt ttaatggcaa
    14461 ttaagcgtgt taattcaatt tatattattg taactacagt aacactctcg ctaattatta
    14521 cctatatcca cagttcgcca acccttgaac agctagggaa ttatttcttt accagctata
    14581 aacctgttga aggcgtagat ttaggcgaag tggcatcatt agtctctcgt ggtggcatta
    14641 atagtatgtt ctttaccatc actattgtat tgcttgcgtt aagtttaggt ggtcttttac
    14701 aaatcctcgg cattttaccg gcactactta acggcattag cggcttttta accagcacag
    14761 gacgtgttac tcttgtagtt gccagcactg cggtgggaat taacgtctta atcggtgagc
    14821 aatatttgag cttattgtta tcaggtaata ctttccgctc aacttatgaa cgtttaggct
    14881 tagaagtgaa aaacttatct cgcaccattg aagatgcagg cacggtaatc aacccattag
    14941 tcccttgggg cgtgtgcggt gtgtttatca gtagcgtatt aaatgtaccg gtgttagatt
    15001 atctaccata cgcattcttc tgttatatct gtttaatcct taccttaatt tttggattta
    15061 ccggggtaac aatcagtaaa aaagctaact aatatgtgaa aaatgcctac aaatttgtag
    15121 gcattttctt ttcattagag ctgaagaaca gcttgtttgg ctaactctct ggcgagttta
    15181 tcaatatgca atacatcagc aatttcactg acttgaattg gagcaatatt ttccaccacc
    15241 gttctattca cgttcacaat atccgtaaag cggatttgct cgtttaaaaa cgcctcaacg
    15301 gcaatttcat tggcggcatt catcgctgtt gtcgcatact gtccttctgc aaaagcctca
    15361 atcgctaatt ttaagttcgg gtaacgggca aaatccggct cgataaaggt tagctctttt
    15421 aatttaaaga aatctaatgg tggcacacca gcattaattc ggtttggata tgccatcgtg
    15481 tgagcaatcg gcgtacacat atccgggttg cccatttgag caatcaccga gccatcaata
    15541 taacgcacca tcgaatgaat aattgattgt gggtgaatga tgatatccat ttcctcggct
    15601 gttgcattaa acaaccagcg ggcttcaata tactccaagc ctttgttcat cattgtggct
    15661 gaatcgactg aaattttctt acccatagac caattggggt gagcaactgc ttgagccggt
    15721 gtaatcgcat caaattcatt taatggctta gtacggaacg gtccacccga tcctgttaaa
    15781 ataattttac tgacacccag ttcagcgagt ggacaaaacc cgactttttg ctgtgcctcc
    15841 ggtggaagcg attggaaaat cgcattgtgt tcactatcta ccggtaagag cttcgcaccg
    15901 gatttacgag cctcatcaat aaaaatttgc ccacaggtta ccagcgattc tttatttgcc
    15961 aacaatacgg ttttacccgc tttcaccgca gaaagtgtcg gtaataaccc tgctgctcct
    16021 acaatagcag ccattaccat atccacttcg gaatgtgcag caagctcaca aatagctgct
    16081 tgaccggcta acacttcagt tttagacccc aaagttgcca atgccgtttt taatgcttgt
    16141 gcggattttt catcatccat tgccgcaaaa gtcggctgat attgacgaca ttgctccagc
    16201 attaattcaa cattctttcc accaactaac gcaaacacct catattggtt tgggtttggg
    16261 ttatgctcaa ctaccgataa agtgctttta ccgatagaac ctgttgaacc taaaatcact
    16321 aattttttca ttttgtttct ctttatctaa tgactgataa gggcgaaaga tttttcgccc
    16381 ctacgccgta attatgcgga tactcattcg ttgtttgtaa attgtttagc aaaaacaacc
    16441 gcttgtagat taactcgaaa gccgttttgc ttcgataaca tcatctaatt gagcgatacg
    16501 agccaataat ttattcaaaa tttcaacgtt gttaagctga atttccatat caatggtggc
    16561 aaggctacgt ttcacatcgg ttcggctgga aacgcctaac acgtttactt tttcatttgc
    16621 cataattgca ctgacatctc gcagtaagcc gttgcggtca ttggcaatca ctcgaatggt
    16681 taagcttaaa ccagaggtat agccttcgcc ccaatccgcc tccacaactc gttctgggtt
    16741 gagactttgt aattcaaaca gttgctcaca atctgcacgg tgaatcgaaa tccctctgcc
    16801 ttgtgtgatg taacccacga tttcatcacc cggaatcggc tggcagcaac gggcaatgga
    16861 atgcattaag ttccctacgc cctctacaat cacatagcct ttgcttggct tcggctgatt
    16921 ggtgttttta ttcacctgtt taagtaccgc ttcgtcttct tgttcggcgg tcggtttaat
    16981 taattttgat tgcaagaagt gcattaactg atgaagacga atatcgccac cgccaatacc
    17041 ggcatagaga tcatcaaact gttttaagtt atagcgaggc agagcatatt cttcaatttg
    17101 cttgagcgta aaaccgaatt tttccatttc ggcttcaagg gcctctttgc cgattggaat
    17161 atttttctct cggtctaatt ttttaaacca cgcaataatt tttgagcgag ctttgcctgt
    17221 attcacaaaa ccggtattcg gattgagcca atctcggctt gggttcggct ctttttgggt
    17281 gataatttca acctgatcgc ccatttgcag atgataagta aacggcacaa tccgccctgc
    17341 cacttttgct ccaatgcaac gatgcccgat ttcactatga attgcataag caaaatcaag
    17401 tggtgtagct ttttgcggta aatcgatcac ctcgcctctt ggggtaaaga cataaacacg
    17461 atcatcaaaa atttgcgaac gcatttctgc caccatatcg cctgaatcgg caagatcgtt
    17521 ttgccactca agcaatttgc gtagccacac gattttttct tcgtagcccg aacgccctgc
    17581 ggttgccccc tctttatatt tccagtgagc ggctacgcct agctccgcat catcgtgcat
    17641 ttgctgggta cgaatttgca cttcaatcgt tttttcacct tcgcctaata caactgtatg
    17701 aatagactga taaccgttag gttttgggtt agcaatataa tcatcgaaat gttccggcaa
    17761 atgggtatat ttggtgtgaa taatgcctaa tgccgtgtag caatcttcta acgttggcac
    17821 tattacccgc acagcccgaa tatcgaaaag ctgattaaat ctcaaccgtt ttttctgcat
    17881 tttcttccaa atgctgtaga tatgtttcgg gcgtccataa atctgcacat tcttgatttc
    17941 aggacttaaa caagcggtca gatctgctac aaaatttgca atataacgct cacgatccac
    18001 acggcgttcg cccaattcaa atttagcaat ttgagtgtaa gagacagggt gtaaaatgcg
    18061 gaaacagtaa tcttccagct cccatttgag ctgcccgata cccaatcgat tggcaagcgg
    18121 tgcataaacg tgagaacatt ctttagcggc gagaacggta tcttcttcgg aatggtggtt
    18181 actatcacgc aggtaggcaa ttcgttcggc aagtttaatc accacacagc ggaaatcgtc
    18241 caccatcgcc aacaacatgc gacggatatt gtcgatttgc agatccgaca cattattggc
    18301 actaagctgg cggatattct ccatttcgag tacgccttta actaagtttt tgatgtcgtt
    18361 actgaaatct tcttttaatt gcaccaagtc gatcacattg tgttttacca gaggaaaaag
    18421 cattgcggca actaagctgt catcgtccat attcaagccg tgcaatactt caaccatctc
    18481 aatgccatac cacatcagac tatagtcggt atccagtttt tcctgtgcat aactccacgc
    18541 attgtgaatc tgctcaaaag tcacaggaga catattcagg cttgcacacc aactcgacaa
    18601 ctcaaaatta ttcggttcaa gttgatggga ataacgaatt gctaccataa ggcctccttg
    18661 taaatttttg tggaaattag accgcttgta cagcttaaaa tggagtttta ttatacgtgg
    18721 aaattcagaa aaaatttacc cctaatcgaa aatttaatcc aagttatctt atcctcttta
    18781 ctccttaaga ggtagcaacc ttgtgataaa tcaaacctat caacacaatc atttgcacga
    18841 cttcacgctc ttgattaaaa tacttgcgtt tttattttga tctttatttt tgtgggtagc
    18901 aatgacaatt ttagctttag gaatcaacca taaaaccgcc tctgtgggtt taagagagaa
    18961 agtggcgttt gtagatgaca aacgtaaact ggctcttgaa caaatccaaa cgagcggatt
    19021 ggctgaaagc gtggtcattc tctctacctg caaccgcacc gagctctact tccaccagcc
    19081 taatatttct ccccgtgaag agagcgagga aaatatccaa tggcgtgaac aatgtttccg
    19141 ctggtttgcc caaattcatc aacttgatga aagcgagttg cgtgaatgtt tatattttaa
    19201 acaaaattta gaagccgcta accacttaat gaaagtggca agcggattag attcactaat
    19261 tttaggcgaa ccacaaattt tagggcaggt taaacaagcc tatcaatata gcgaagattt
    19321 ctaccaacat cagcaaaaag cgatgtccac caagctatca cgcttgttcc aacgcacctt
    19381 tgccaccgca aaacgagtac gttccgaaac cgaaatcggc agccaagcgg tgtcagttgc
    19441 ttatgcagct tgcggtttag cccgtcaaat tttcgataat tttggcaagt tacgcttttt
    19501 gctggtaggg gcaggcgaaa ccattgaatt agtcgcccgc tatttaattc aacacggggc
    19561 gaaaaatata atgttggcaa accgcaccca tattcgggcg gaaatgttgg cggaaaaact
    19621 aaacgctcca atgcaaattc tgtcgttaag tgctttgcaa ctcggtttaa accaagctga
    19681 tgtagttatt agctccaccg gtagccctga taccctaatc agtaaagaaa tggtggaaat
    19741 tgcgcaaaaa caacgccaat ttgacccact tttgctgatt gatattgccg ttcctcgtga
    19801 tattgacgaa aaagccggcg acttagaggg cgtttacgct tatagtgttg atgatttaca
    19861 aaatattatc caacgcaata tggctcagcg tgaagaagcc gccaaacaag ccgctgaaat
    19921 cgtcaaagag gaaagcaaag cattttttga atggttaaaa caacagcagt ctagtgattt
    19981 aatcaaacgc tatcgtcaag atgcggagca aacccgccaa gaattgttgg agaaagccct
    20041 acaagcaatc agtcaagggc aagacagcca aaaagtatta agtgagctaa gctacaaact
    20101 caccaaccag ttactacacg ccccaaccca agcgttacaa gcaatggcaa aaagtggcaa
    20161 ctccaccggc ttacaaagtt tttcaagagc attacggcta gaagaatgat gctcagcaca
    20221 ttcttttagg catatttgca aaaaattgaa catttttaac cgcttgcgga cgcacgccgt
    20281 gcgtccctcc ccgtgttccc gatcttcttc taatttcaac ttccccaaat ttccgctata
    20341 ataagccaat ttttgcaact attttgcaaa taaccggata tagaggatac aaaatgactc
    20401 ctgttgttgc cctagtgggc agacctaatg tcggcaaatc gactttattt aaccgtttaa
    20461 cccgtactcg agatgcctta gtagcagatt tccccggctt aacccgagac cgtaaatatg
    20521 gtcacgctaa tattgccggc tacgatttca ttgtaatcga caccggtggt attgatggta
    20581 cagaggaagg cgtggaagaa aaaatggcgg aacaatcttt attggcgatt gaagaagccg
    20641 atgtggtgct tttcttggtt gatgcccgag ccggattatt acctgccgat gtcggcattg
    20701 ctcaatattt acgccaacgt gaaaaaacca cggtggtggt tgccaataaa accgatggta
    20761 ttgatgccga ctctcactgt gccgaattct atcaattagg cttaggcgaa gtagaacaaa
    20821 ttgctgcagc acaagggcgt ggggttacgc agcttatcga gcaagtgtta gctcctttag
    20881 gcgaacagct aaatgccgag caatttaacc aagaacaagc gggcgaaaat gctaaaaatg
    20941 ttgcaaatga agaaacagac gaatgggata ccgaattcga ctttgagaac gaagaagatg
    21001 cggcattatt agatgaagcc ttggcagaag aagcagaaga gtcgattgaa gataaaaata
    21061 tcaaaattgc gattgtcggt cgtccgaatg ttggtaaatc aacactgacc aaccgcattt
    21121 taggcgaaga gcgtgtggta gtttatgata tgccaggaac aacccgtgat tctatttata
    21181 ttccaatgga gcgtgacggt cagcaatata ccatcattga taccgccggt gtgcgtaaac
    21241 gtggcaaagt gaatttagcg gttgagaaat tctcggtaat taaaaccttg caagccattc
    21301 aagatgcaaa cgtggtgcta ttaactattg aggcccgaga aggtatttcc gatcaggatt
    21361 tatcactact cggctttatt ctaaatgctg gtcgttcatt ggtgattgtg gtaaacaaat
    21421 gggacggctt gtcgcaagat attaaagatc aagtgaaatc agagttagat cgccgtttag
    21481 attttattga ttttgccaga gtgcatttta tctcggcatt gcacggctca ggcgtgggga
    21541 atttgtttga ttcagtaaaa gaagcctacg cttgtgcaac gcaaaaaacc tcgacctcaa
    21601 tgctgactcg cattttgcgt atggctgctg atgaacacca accaccattg gttaatggtc
    21661 gccgagtgaa attaaaatat gctcacccgg gtggctacaa cccaccaatt attgtgattc
    21721 acggcaatca ggttgaaaaa ttagcggatt cttacaaacg ttatttaagt aattatttcc
    21781 gtaaaagttt aaaaattatc ggctcgccaa ttcggatttt attccaagaa ggcaataatc
    21841 cttttgccgg taagaaaaac aaactgacac caagccaatt acgcaaacgt aaacgtttga
    21901 tgaagtttat taagaaaagt aagaaataat atctaacgat agcgcaagca tccacgcttg
    21961 tgctaaaact aataatggca caagcgtgga cgcttgcgcc atcatttaac agagaatatt
    22021 aactatgatg atgcaatact ctccaaaatt taataatgct aaagtgctgg tgcttggcga
    22081 tgtaatgtta gaccgttact ggttcggggc aaccaatcga atttcgcctg aagcccctgt
    22141 gccggtggtg aaagtacaag atattgaaga gcgtgccggc ggtgcggcaa acgtggcgat
    22201 gaacatcgcc agccttggcg taccggtaac attacacggc ttaattggcg atgatgatgc
    22261 cgggcgtgct ttagataaat tacttaattc ccaccagatc caaaatcatt gtgtggtgat
    22321 taattcgcac ccaaccatca caaaattgcg gattctttcc cgccatcagc aattattgcg
    22381 gttggatttt gaagagggtt ttcacaatgt agattctacc gccctacttg caaaactttc
    22441 gcaagaaatt accgcttacg gagcattaat tctctcggat tacggcaaag gcacattgga
    22501 atcggtgcaa caaatgatcc aaattgcccg caatgctaag gtgccggtgc tgatcgaccc
    22561 gaaaggcaca gactttgaac gctatcgtgg ggcaacattg cttacaccaa atatgtcgga
    22621 atttgaagcg gtggttgggc attgtaaaga tgaggatgag attgtcagca aagggttaaa
    22681 actgattgcc gactatgatt tatctgcact attagttacc cgttcggaaa aaggaatgac
    22741 cttacttcgc ccgaaccacg agccttatca tctgccgacc caagccaaag aggtttatga
    22801 tgtaaccggt gcaggcgata ccgtaatcag tgtattagcc actgcgattg ccgatggcag
    22861 agcctatgaa gaagcctgct atttagccaa tgctgccgcc ggtgtagtcg taggtaaatt
    22921 agggacttca accgtcagcc cggttgagct ggaaaatgcg attcaccaac gcactgccac
    22981 cggttttggc gtggtttctg aagccgaatt aaaagcgatt gtggaagaag cgaaaaaacg
    23041 tggcgaaaaa atcgtgatga cgaacggttg ctttgatatt cttcaccccg gtcacgtttc
    23101 ctatttggaa aacgcccgta aattaggcga ccgattaatt gtagccgtca ataccgatgc
    23161 ttcggtaaaa cgcctaaaag gcgaagctcg cccgattaat gatttagctg cccgtatggc
    23221 agttttagct ggtttagcct ctgtagattg ggttgtgcct tttgatgaag atacaccaca
    23281 acgtttaatc agtgaaatcc tacctgattt attggtaaaa ggtggtgatt acaagccgga
    23341 agagattgcc ggcagccaag aagtatgggc aaacggcggc gatgtgcgag tattgaactt
    23401 tgaaaacggc tgttctacca ctaatgtgat caagaaaatt caagcactat aatggtaata
    23461 agcgaatggc gagagaaaaa atcattattg ataccgagca atttcagcgc acaatatctc
    23521 gtatttcaca tcaaattatt gaaaaacacg gtgatttgca agatgtagtg attgtcggca
    23581 tcaaacgtcg aggagctgaa attgccgagt taatccaaaa acgcattgaa gatttagctc
    23641 aaacacgctt gccttatatg gcgttagata ttacgttcta ccgtgatgac ctagacttaa
    23701 tttatcaaga tcccgtattt atgggagccg ataatcagct aaatctgaac ggtaaaaaag
    23761 tgattttggt tgatgatgtt ctgtttaccg gcagaaccat tcgggcggca cttgatgcac
    23821 tcttagattt tggcagagct gccagaattg aactggtgat ttttgtcgat agaggtcatc
    23881 gggaattgcc tatccgagcc gattatgtcg gaaaaaatat tccaacggct aaaaacgagc
    23941 aaattcaggt gcaaacgctc tcgtatgatg ggattaacca agtggtctta gttcctgctg
    24001 ccaataaaga aagtgcttaa attaagtgaa ccttttcgct aaacttatct ctaaggaaaa
    24061 gttactgctt aattacctcc attaggattg ttataaaaat gaaattagtc aaatcattat
    24121 ttgctgttgc cgttgcaaca atgagtctta cccaaaccgc ccacgcattt gaagaaagag
    24181 tggtggcgtt agtgaatgat acccctatta tgcaaagcca ggttcaacgt gtgcttggca
    24241 agaaaaaggc gacagaaact gctcaacgtg cggctattga tcaagtgatt gatgatatgt
    24301 tggtgcaaca ggcaatgaaa gaagccggcg ttaaagtcag cccagctgcg gtaaaccaag
    24361 cggttgaaaa tgtagcaatt caaaacggca ttacttacgg tcagttatta gatgcgttag
    24421 attatcaagg tattacactt gaacaattca aacgtaatat tgctcaacaa atggcaatgg
    24481 aacaagttcg ccatatcagc attagcaaat cgattcaggt tgcaccacag caagtgcaag
    24541 ctctggcgaa agagttaatg gcgaaagata aagcagcagg caaattgaaa accgtttctg
    24601 gcaaagagca tcgcattagt catattttgc tcaaaaccaa cccgatttta aatgatgctc
    24661 aagccaaagc aaaacttagc agcttaacta ctgatattaa ctcaggcaaa atcagctttg
    24721 aagaagcggc aaaaacccat tctgttgatt atgcctcagg ggcagacggt ggagatttag
    24781 gttttaactt cttagaaatt tacgatccgg catttgcgaa tgttgcatca aaaatcaaac
    24841 caaaccaaat ttctgctccg tttaaatcgc aatttggttg gcatatttta aaagtcaccg
    24901 acactcgtaa cggagacaga accgaagatg cttaccacca acgtgcttat cagcaactgg
    24961 tgaacaagca agccgaagaa gcctctaaag attgggtaaa agcgcttaga aaaaccgcca
    25021 atattcaata tgtcggtcaa taattaaaat ttttaagaac ctcgcataat gcggggttct
    25081 tttcttattt caaaaaggat aacaatgagt tctacaaatt ccaaaaaaca tttaggtcat
    25141 accgctcgta agcgtttcgg gcaaaacttt ttgcacgata tgaacattat tcacagcata
    25201 gtttcagcca ttaacccgaa aaacggacaa tttttattag aaatcggtcc gggtttagga
    25261 gcattaaccg agccggttgc cgaattggta gataaactca cggtggttga aattgaccgt
    25321 gatttagcag agcgtttacg ccaccacccg tttttaaacc aaaaactcac cattattgag
    25381 caagatgccc tacgctttaa tttccgtgac tattttaacc aactcaactt agacgaagac
    25441 tcggtgcgtg tgtttggtaa cttaccttac aacatttcta cgcccttgat attccacctg
    25501 ctgacctttc acgacttaat tcaagatatg cactttatgt tgcaaaaaga ggtggtgaaa
    25561 cgtttatgtg ccgcgccaaa cagtaaagca tacgggcgtt taaccattat ggctcaatac
    25621 tattgccaag taattccggt gctggaagtg ccgccaaccg cctttaaacc ggcaccaaaa
    25681 gtcgattctg cggtagtgcg tttagtgcct tataaccaac tgccttatcc ggcaaaagat
    25741 gtgtattggc tcaatcgggt cacgactcaa gcctttaacc aacgccgtaa aaccttacgc
    25801 aatgctcttt caaccctgtt tagtgcggag caactggacg ccttaggcgt tgatttaacc
    25861 gcccgagcgg aaaaccttac cattgccgat tatgtgcgtt tggctaactg gctacacgac
    25921 aacccgccgg caattgatac aaccgaagaa ttggttgatg aagattgcta atcaataaat
    25981 tacaagcggt catttttcta ccaagatttg caaatcttta gtgaaaaatg gccgcttgtt
    26041 taaatcagct ttacttgttt tgctgttact tagttttgat gttacttggt gccgaaaatt
    26101 ttatcccctg catcgcctaa gcctggaatg atatagccgt tttcgtttaa gtgactatcg
    26161 attgaggcgg tgtagagttc aacatctggg tgggcggctt ctaatacttt aatcccctct
    26221 ggagcggcaa ctaacactag cactttaatc tgcttacagc ctgctttttt caggaggtca
    26281 atggttgcta ccattgagcc accggttgca agcattgggt cggtgataat ggctaaacgc
    26341 tcatcaacat cgttggctag tttggagaaa tacggcacgg gctttaaggt ttcttcgtca
    26401 cgataaatcc caaccacact aattctggca cttggaatat gctctaacac accgtccatc
    26461 atacctaagc cagcacgcag aatcggcaca acagtcactt ttttgccttt aattcgctca
    26521 accgcaattt tctctccgct ccagccattg atctccacac tttccatttc cagatctttg
    26581 gttgcttcgt aagtaagcag actaccaatt tcattcgcta gctcacggaa atctttggtg
    26641 ctgatttccg cttcacgcat taagcccaat ttatgcttta caagtgggtg ttttacttca
    26701 acaattttca ttttaagctc cttaattagt gtaatttaag ccttattcac ctttgctaat
    26761 tcttcgtctc ttaacactcg gcgaagaatt ttgccgacat tactttttgg taattcgtca
    26821 cggaattcga tgtctcttgg aattttgtag ccggttaaga attgacgaca ataggttctc
    26881 aattcatctc gagttaaact ttcatctttt ttggttacaa aaattttaat gctttcgccg
    26941 gaagcctcac tcggcacacc aatcgccact acttcattca cttttgggtt ttgggaaatc
    27001 acttcttcaa tttcggttgg gtacacatta aaaccggaga caataatcat atctttttta
    27061 cgatcaacaa tgcgtaagtt cagatcatcc cccattacca caatgtcacc ggttgccatc
    27121 caaccatctt gtagcacttg tgccgtttca tcaggacggt tccaatagcc ttgcattact
    27181 tgcggccctt tcaccaccag ctcgccccgt tcgccgagtg gtacttcttt gccttcatca
    27241 tccacaatac gaatgtcagt atttggcact ggcacgccaa tagagccgga atattccacc
    27301 gaatcgccac gggttgcact aatcagcgga gaacattctg tcattccata accttcgata
    27361 atatgtacgc cggttaaatc gtgccagcgt tttgccacgc tagattggat cgctgcaccg
    27421 ccacctacac ttaattttag gtgtgaaaaa tcaacctctt taaaactttc gtgattaagt
    27481 aatgcattaa acaatgtatt taccccagta atcactgaaa ctttgtactt ttttaattct
    27541 ttaataaagc ctggaatatc gcgcggatta gtaattaata atccggtaag tcctaattcg
    27601 ataaagagca agcaattcat cgaaagtgct aagacgtgat acagcggtaa aggtaccaat
    27661 ccaatcatat tggcagaatt acccaacaat ggctcaacaa tccattttgc ctgcatcata
    27721 ttagcaatta agttttgatg agtcagcatt gcccctttcg ctacacctgt agtaccgcca
    27781 gtgtattgta aaaaggcgag atcttggctg acaatattcg gttttacata ttgacgctgt
    27841 ttgccaatgc ttaaggcttc acggaagctg accgcatgtg gcaatttata tttcggcact
    27901 aattttttga tgtatttcac cacaaaattg actaaggtgc gtttgccgaa tgaaagttgg
    27961 tcgcccattc gggtcaaaat aacgtgctta atctcagtat taaagacaat tttttctaag
    28021 gtagccgcga agttcgagac tatcacaatc gctttcgcac cactgtcatt taattgatgt
    28081 tctaattcac gcggcgtata aagcgggttg acattcacca ccacaagccc ggcacgtaat
    28141 gcgccaaata aagcgatcgg atattgcaat aaattcggca tcatcaatgc gattcgatca
    28201 ccttttttca ggcgtaattc attttgcaaa taagcggcaa acgagcggct acgttcttcc
    28261 aatttacgga acgttaaaac ctgccccata ttaatataag ctggaatatc agggtggcgt
    28321 tgtatcgctg cttcaaacat ttccactaaa gattcatatt gatctgtttc aatcgttttt
    28381 ggtgaataag gcggataatt atttagccat attttttcca ttatagtctc ctaaaacctt
    28441 acctaaaaag ataggtgaaa aatttgcttg tttgctgtgt ttatgaatca attttcttac
    28501 agcccagaat gttatacctg ttgaaagcaa cattataaat aaaacaataa gctcatttgc
    28561 aaaaaattgc gaaaatccga ccgctgtcat cacaagaacc agcagaggaa tgccataaat
    28621 taaaaacacg cttttgagca agatattttc agctaaccct agttcaacct tatcgcctac
    28681 ttttaggggt tcatctacct caatacgaaa acgagggtca attttttcac ctgctaatgc
    28741 tgataatgct ttgctgccac aagcagactg agctacacag ccaccacagc tacttttagc
    28801 ataacattgt acaatagcca caccattctg atattccacc accgtagcct gttcgatcat
    28861 catggctgag ctccttcctt aaaaccaata ttgttcataa tttgcttagc cgattgcaac
    28921 ggcacatcac caataatcac aatatctcta tcattaatcg tttgatttaa aatcgttaat
    28981 ttaccttgtt gccaagcgta ctcattaaaa ctcacgcctt ggctaggcat aatataaata
    29041 gttaatgtag ataaaccatc actatatact ctgctatcta catactcact ttccacttga
    29101 tatgtcgcac ctgtgactgt ttgttgctga attaacctaa accctgtcgg caaccacttc
    29161 acctgccaac catcagactt aggaaattct tcttttttca ctgtcgttaa tgttggtaac
    29221 attagtgatt ctattacatt tgcaatccta tccaattctg gagattgata aagttgcaaa
    29281 actctgaatt cttctaatac caaattatcc atattcaaga cttggctttt aagtaataaa
    29341 tgtgtttctt catcaatcca tagtatatag gcatatctta aagtatcatt tggcttcata
    29401 cgaattacct ttgtaattcg gtcagaaata cgatctttac cagcatctaa aaaggcataa
    29461 ccttttaaat ttgcataatc tgtgtaaagt acattaggga ggttatctaa aatctgtgaa
    29521 ctatttaaac taaaaggacg aaaattatac cccaaatagc tgaccttgtt attttttaaa
    29581 ataatttctt ctcggctgtg atctaaattc agtaattggg catattcttt attatgggta
    29641 aaagcatgac gtaaacggaa agattctgta tcacttccct gttgaagaat ataaactaat
    29701 tcataagtgg attttttatg tgcttctgac atagccgtta aatatgctaa tggtgtttta
    29761 atagttgatt ctgcccaagc aaatgtatag caggcagaaa taacccaaaa caacaataag
    29821 tattttttta tcttaaaaag catatttatt ctcaagccaa attaacttag
//
LOCUS       DANMBQ010000014        29554 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.014, whole genome shotgun sequence.
ACCESSION   DANMBQ010000014 DANMBQ010000000
VERSION     DANMBQ010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 29554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29554
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.014"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(73..657)
                     /locus_tag="PXE92_000586"
     CDS             complement(73..657)
                     /locus_tag="PXE92_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfoxide reductase heme-binding subunit YedZ"
                     /protein_id="HDL5759865.1"
                     /translation="MLTWLRILIHLGCLLPLVWVAQLLYTGNETILGADPIKELEHFL
                     GYGAIVIFCIMFLLGIALQYLKKNQYQILRRPLGLWAFVWAALHISSYLLLELSLDVK
                     LFFSELAGRPYLILGAAAFFILSIMAITSLPMLKRKLGTRWGTIHQWAYPALVLAMVH
                     YYWSVKSVTFDPIIIGVLVLFIVAHKIQAKFAKK"
     gene            complement(657..1610)
                     /gene="msrP"
                     /locus_tag="PXE92_000587"
     CDS             complement(657..1610)
                     /gene="msrP"
                     /locus_tag="PXE92_000587"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HDL5759866.1"
                     /translation="MKKLTIQDVTPETIFYQRRKIITALGLGIAASALPKVSMAETQR
                     HLQSLQFKPDPNKGLELTPENKVIGYNNFYEFGVDKSAPAKNAANFKTDPWTLEIGGE
                     VENPFSLNHQQLLNTFPLEERIYRFRCVEAWSMVVPWIGFELARLIEMAKPTSKAKYV
                     VFHTLYDPAQMPGQKNRLLGGGIDYPYVEALRLDEALNSLTLLSVGLYGKTLPPQNGA
                     PIRLVVPWKYGFKSIKSIVKITFAEKRPLTTWESLAPNEYGFYANVNPNVDHPRWSQA
                     SERVIGAGGLLSVKRQPTLMFNGYENEVANLYRGLDLKVNY"
     gene            1719..2285
                     /locus_tag="PXE92_000588"
     CDS             1719..2285
                     /locus_tag="PXE92_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDL5759867.1"
                     /translation="MKSLSSTQIEEIRKQMVKFATLQLADKDLAEDVVQDALTNAYKH
                     SASFRREAALKTWIFAILKNKILDLLRTRKRHIPVSSLCEEEESPSAFFDRHDHWLEH
                     QDVTEWRGVAQSTYQKEFWAIFDICLNKLPAQQARVFMMREHLEMSSAEICQECEISL
                     SNLNVLLHRARLRLQECLSRNWFREESK"
     gene            2282..2467
                     /locus_tag="PXE92_000589"
     CDS             2282..2467
                     /locus_tag="PXE92_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL5759868.1"
                     /translation="MKCRQATELISQSCDEKLRLQQHMRLQLHLLVCPKCRNFNKNTK
                     KLGKILRAYCNDKDAPF"
     gene            2497..2781
                     /locus_tag="PXE92_000590"
     CDS             2497..2781
                     /locus_tag="PXE92_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759869.1"
                     /translation="MRYWLISLSILLSGCVVPVTPTGQAGIPMPIIIGVSDPLDSKEV
                     HICTLKPFTQEYRSEHSSRGRAKLNVQKQCRANHSEMFCEEKDIVCKTYD"
     gene            2885..3928
                     /locus_tag="PXE92_000591"
     CDS             2885..3928
                     /locus_tag="PXE92_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL5759870.1"
                     /translation="MQPINIAIAGAGFSSRVFHIPFLKQDARFNIVKVYERTSNNAAE
                     WLPNAETVRDFNALLTPEVDLVLITTPNQTHYAMVKESLLAGKHVLVEKPLVATVAEA
                     EELAELAKRQGKVLYVYQNRRWDSHIATAKSLMEQNLLGELVDCEIRFDRYAKEKNVK
                     VWKESGELGTGLVYDLGVHLIDQALYLFGKPEAVYADVRYQHEGALVDDNFDIQLYYA
                     NGFKVVLKASRYAREPSPTFVLHGKLGSYLKQTPDNQEDLLKNGVQPIGKDWNIEEKE
                     NWGILHTEVEGNVVRQPYRNAEVSYQNLFDDLYQAIAHNAEPIIKLEDVIFVLKVIES
                     VFESAKLGQKIYL"
     gene            4168..5274
                     /locus_tag="PXE92_000592"
     CDS             4168..5274
                     /locus_tag="PXE92_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HDL5759871.1"
                     /translation="MNKLIASLVASSCATAFAAPVQQNNFHTTTHTYEFTQSYDLVVP
                     QGSKGTTNLWIPLPSDTDYQTVKSIEFEGSYKNAYITENNAYGAKTLFATWDTDAPKR
                     DLKVKMVIQTQDREPMAQGALANYQMPEKITYSVDVLEYLKPTAHIKTDGIVKEYADK
                     IVGNEQNPLKKAELIHKWIVDNMERDNSVLGCGDGDVEKILTTKVLKGKCTDINSVFV
                     ALARASNIPAREVFGIRLGQAVKMGQYSKTAFGSSKDGVANESGGQHCRAEFYLAGFG
                     WVPVDSADVAKMRLAEKKDVDDADVQAVSKYLFGNWEMNWVGFNHGRDFDLYPQPELT
                     PLNNFGYPYAEVGGDPLNSFEAKEFGYEFISKEL"
     gene            5249..5617
                     /locus_tag="PXE92_000593"
     CDS             5249..5617
                     /locus_tag="PXE92_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759872.1"
                     /translation="MNSSLKSYNHKFITMCVTAIVSAVTSTFCCIGPLVYLVFGISSP
                     WLMELNQLEFLQLPMLLISLAAFGYGFWLLNFSNKIICTKYFSRRTLVILYWVVSVVV
                     MFFLTYPYVLPYILEMWSGE"
     gene            5619..5927
                     /locus_tag="PXE92_000594"
     CDS             5619..5927
                     /locus_tag="PXE92_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL5759873.1"
                     /translation="MKKYIATMLLAFGLVHSSYAQEKTAQIETKQAEKTVVLHIPEMY
                     CQLCVYLVNKELRAVEGVISTKASMKERKATVVVKESVDNQALIQAVGNLKYTAKVIE
                     "
     gene            6165..6719
                     /gene="srlA"
                     /locus_tag="PXE92_000595"
     CDS             6165..6719
                     /gene="srlA"
                     /locus_tag="PXE92_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725059.1"
                     /note="catalyzes the phosphorylation of incoming sugar
                     substrates along with their translocation across the cell
                     membrane; the IIC domain forms the PTS system
                     translocation channel and contains the specific
                     substrate-binding site; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HDL5759874.1"
                     /translation="MIEAITHGAEWFIGLFQKGGETLVGMINGILPLLISLLVVMNAL
                     IKFVGQDRIERLAQRSAGNPISRYLILPVIGTFVFCNPMTLSLGRFLPERYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLGLPLGPLAISYLLVGMFTNFFRGWI
                     TDFTTAFFEKRMGITLDREVHLSH"
     gene            6750..7751
                     /locus_tag="PXE92_000596"
     CDS             6750..7751
                     /locus_tag="PXE92_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HDL5759875.1"
                     /translation="MSNKAIYIEKGNGGWGGPLTLPVVEGKKVLYMTGGTRPAIVNKL
                     VELTGWEAVDGFKEGEPPAEEIGIAIIDCGGVLRCGLYPKRRIPTINIHSTGKSGPLA
                     EFIVEDIYVSAVKENNIRLIDADGSVPVATEQAKPTSSTTATAKEYDSSKKITEQSDG
                     LLAKIGMGMGSVAALFFQAGRDTIDTVLKTILPFMAFVSALIGIIIASGLGDVIAHGL
                     TPLANSPIGLVTLALICSFPLLSPFLGPGAVIAQVIGVLVGTQIGLGNIPPHLALPAL
                     FAINAQAACDFIPVGLSMAEAKQDTVRVGVPSVLVSRFLTGAPTVLIAWAVSAFIYQ"
     gene            7796..8194
                     /gene="srlB"
                     /locus_tag="PXE92_000597"
                     /gene_synonym="gutB"
     CDS             7796..8194
                     /gene="srlB"
                     /locus_tag="PXE92_000597"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HDL5759876.1"
                     /translation="MHRLSKRENIYMTIIYQTTFTKIGNFAQESLTDDMLITFKQGAP
                     ADLQDYCFIHNPSELSSPLEVGDIAEFDGVAYPITAVGSVASENLSALGHITFRFDGA
                     NDAEFPGSVHVIGTPPQGLTENSTLIIKRD"
     gene            8242..9030
                     /gene="srlD"
                     /locus_tag="PXE92_000598"
     CDS             8242..9030
                     /gene="srlD"
                     /locus_tag="PXE92_000598"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HDL5759877.1"
                     /translation="MNNEKKVAIVVGGGQTLGAFLSEGLADAGYRVVVADLNGENAQK
                     VAADINAKQGEGNAIGVQVDAADEPSVEALAKATDTVFGRADVLVYSAGTAKASPIWD
                     FNLNDFDLSVKVNLTGYFLTAKHFSRLMIRDGIKGRIIQINSKSGKVGSKYNSGYSAA
                     KFGGVGLTQSLALDLADKGITVHSLMLGNLLKSPMFQSLIPQYAAKLGIPESEVEQVY
                     IDKVPLKRGCDYQDVLNVLKFYAGEEAAYCTGQSINITGGQVMF"
     gene            9199..9579
                     /gene="gutM"
                     /locus_tag="PXE92_000599"
     CDS             9199..9579
                     /gene="gutM"
                     /locus_tag="PXE92_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
                     /protein_id="HDL5759878.1"
                     /translation="MDSITLLIILAMIMWLLQAVLGWLQIKAFNQAFMEISKKGKVTV
                     GRNSGRFNPKSVIVLAFDDEKKVVDSLCMKGFSVFARPQKLASVIGLSLDQIVPEKIF
                     PSDKRSQFALKVAISSGYSCSDQK"
     gene            9642..10289
                     /gene="hxpB"
                     /locus_tag="PXE92_000600"
     CDS             9642..10289
                     /gene="hxpB"
                     /locus_tag="PXE92_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HDL5759879.1"
                     /translation="MQINSVIFDMDGVMIDSEPQWAEAQIAVLADLGINITEQDCEQL
                     TRGKRIDELSDTWIKKFQLSVSNQALSEAILAHGCAAIEQHGKALTGLYELLDFLKSN
                     QIKLAVATSSPPVVIKAVFDRLKLWDYFPIRCSAMDEEYGKPHPAVYLSAVKKLGIEK
                     QECIVIEDSVTGLIAAKAANLTTFLVNTDYQNEKFSIADKRMASLLDVIEKLKQH"
     gene            10332..11129
                     /locus_tag="PXE92_000601"
     CDS             10332..11129
                     /locus_tag="PXE92_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor"
                     /protein_id="HDL5759880.1"
                     /translation="MKPFERRQQILAYLAQHGRTEVDVLADYFKLTGATIRKDLTSLE
                     EDKKVLRTYGSVVLIDEEILEREEKINKEDKDDKPLAQKTGINLQQKQAIGQKAAELI
                     NEGNSIIFDAGSTVLQMIPHLKAFDNLSLMTNSLTIFNEILKLNKSYNLLISGGTFRE
                     KSASFHGYFAESAFIGSNFDILFIGTDGLDLDVGLTTFNEVYKVSSLMCDAANKIVLL
                     ADSSKFGRKSPNIVCGLEKIHTIITDEGLSQEMREQIKAKGIELLVV"
     gene            11140..12075
                     /locus_tag="PXE92_000602"
     CDS             11140..12075
                     /locus_tag="PXE92_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HDL5759881.1"
                     /translation="MNHLDSAKETLNLYAQQIITLNHRLSEEFNEVVNMILACQGRVV
                     VGGIGKSGLVGKKMVATFASTGTPSFFLHPTEAFHGDLGMLKPIDMVILISNSGETDD
                     VNKLIPSLKNFGNKIIAMTGNPYSTLGRNADVILNIGVEREACLNNLAPTSSTLVTMA
                     LGDALAIALMKARDFRPEDFARYHPGGSLGRKLLNRVRDVMVRKVPTASLDTTFTECL
                     SVMNEGRMGVAVIMQDDKLEGIITDGDIRRTLAKFGAESLNKTADEIMTRNPKTINDT
                     EFLAKAEDLMKELKIHSLIAVNDEGKVTGLMEFSS"
     gene            complement(12119..12669)
                     /locus_tag="PXE92_000603"
                     /pseudo
     CDS             complement(12119..12669)
                     /locus_tag="PXE92_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005752768.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            12971..14830
                     /locus_tag="PXE92_000604"
     CDS             12971..14830
                     /locus_tag="PXE92_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HDL5759882.1"
                     /translation="MSNLKVKVQGFGRFLSNMVMPNIGAFIAWGFITALFIPTGWLPN
                     ETFAKLVGPMITYLLPLLIGYSGGKLVGGERGAVVGAITTMGIIVGSEIPMFLGAMIV
                     GPLGGWAIKTFDKAIDGKVKSGFEMLVNNFSVGIIGMILAMLSFAFIGGIVTQISAAL
                     GAGVGALVEAGLLPVTSIIVEPAKILFLNNAINHGVFTPLGTAQAQEVGKSILFLIEA
                     NPGPGFGILLAYMFFGRGTAKQTAGSASIIHFLGGIHEIYFPYVLMSPRLILAVIAGG
                     ATGVLTNSLLGGGLIAPASPGSIFAILAMTAPGAHFAVVASVILSCAVTFAIASILLK
                     TQKGEASLEDAQAQTQAMKAESKGVVNGNINKIYVACDAGMGSSAMGASMLRKKVQAA
                     GLNIEVQNLAINDLPQDAQLVITHKDLTARATQRVATAQHLSLTNFLDSAFYDSLVAK
                     LANHQPQQAVQNTQNFANPVEEPQAEGLKLQAAQVFLGLQANSKEEAIRFAGEQLVKA
                     GFVQPSYVDAMFAREQMVSTYLGEGLAVPHGTSDAKDSVLKTGIVVCQYPNGVRFTDE
                     EDGVAKLVVGIAAKGNDHIQILSAITNALDDEQAMKTLTSTNDVEKVLALLSK"
     gene            14934..16073
                     /locus_tag="PXE92_000605"
     CDS             14934..16073
                     /locus_tag="PXE92_000605"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HDL5759883.1"
                     /translation="MNALHFGAGNIGRGFIGKLLADARIFVTFADINQTQIDQINQNK
                     QYGVKIVGDDSRVEIVKNIAAINSKDENAVIEQVKNTDLITTAVGPNVLGFIAPLFAK
                     ALVARVESGNTQPLNIIACENMVRGTTFFKGKIFEHLTAEQQAEIEKVVGFVDSAVDR
                     IVPPAEPNPADPLEVTVEEFSEWIVDQTQFKGDIPNIKGMELTDNLMAFVERKLFTLN
                     TGHLICAYLGKQAGVKWIKEAIAIEEIKTQVKATMEESGAVLIKRYGFDPQAHSAYIE
                     KILKRFANPYLNDDVNRVGREPIRKLSENDRLIKPLRGTLEYGLPYQNLVKGVVMALQ
                     YRNEEDPQAVELAEFIANHGVAAAVEKYTGLTDQAVIAQVVELYQ"
     gene            16085..16600
                     /locus_tag="PXE92_000606"
     CDS             16085..16600
                     /locus_tag="PXE92_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MltR family transcriptional regulator"
                     /protein_id="HDL5759884.1"
                     /translation="MMDYIDKLSEETTLRGFLSIANQRFAKAVEQLIERVFRKTDFAL
                     KSVVDSLFEHQGPLADIEVRLKVLLGLGVISPKVFEDISLFLEVKQHLNEEEDEFAFS
                     HPAVVKFAKDLHHIDFLPINELLNMKASAANKDSMLFQMQQMRLEKMVRSSLILAVTE
                     IDEQLNVESPL"
     gene            16740..18605
                     /locus_tag="PXE92_000607"
     CDS             16740..18605
                     /locus_tag="PXE92_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDL5759885.1"
                     /translation="MQSLLSFVPDFLKQELFWVMALLVFAIWQFIQNKLRMDVVALIV
                     MLFFSLTNILSVKEVLAGLSDPNVVLIALLFIVGEGLVRTGVANQVSDWLMRVSGASE
                     TKVLVLLMLCIAGLGSFMSSTGIVAIFIPVVLAICSGMGISPRRLMMPLSVAGLISGM
                     MTLIATPPNLVAHSELVKSGFEGFNFFSFTPIGLIILVMGIGYMLIARRWLDNGEQSN
                     THSQAQKFSMSQLIEEYQLKERAKMVLVEADSDCVGKSIGQLNLRIEQGLNIIAIQRT
                     KRFRKITVSASVNEIFQPKDILLLDTALDDETYQQRCEQLKLRPIELKGEYFSSQYRS
                     VGMAEISVMPEAECIGKTIRELKFRSRYHLSIVGLKRGDEIIQEELLDTPLKFGDILL
                     VMGVWQQIHRMDDDHRDFFLLRDPAESKNAPPALSQAPHALFSVLTMVLLMITGIVPN
                     VMAALIACLMLGKFRCVDMKSAYDSIHMPSIVLIVGMMPFSIALQKTGGVDLTVRLLL
                     DAMQGLDVHFVLIVLFVVTAIISAFISNTATAILVMPIAIAIANQLGYSPAPFVMTVA
                     VSASAAFMTPVSSPVNTMVLAPAGYKFIDFVKVGVPFTVLVMLVSVFVIPMLFPL"
     gene            complement(18895..19146)
                     /locus_tag="PXE92_000608"
     CDS             complement(18895..19146)
                     /locus_tag="PXE92_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759886.1"
                     /translation="MDKQAILKLFRDNSTAGNSQPSQEPIQVFNNSNVIIQNGDNATV
                     IAGCTVDNNTNLTCADKQRVHDLIHSLEQRNRASRDEGA"
     gene            complement(19158..19640)
                     /locus_tag="PXE92_000609"
     CDS             complement(19158..19640)
                     /locus_tag="PXE92_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5759887.1"
                     /translation="MKIECKKVIGFGNRIEQSRKNAKLSRSEVCDALGGIAISTLQAW
                     EADTREPPISKLMALSQILNVEPCYLLTGERHSQSLNVTREPQPVYATKPQTEEGEVV
                     VIKAKLQEAIETLEEVLEITQREMKPAGKAQMVWAFYELLTQEKSEKEKMVGLLKLVA
                     "
     gene            19824..20087
                     /locus_tag="PXE92_000610"
     CDS             19824..20087
                     /locus_tag="PXE92_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5759888.1"
                     /translation="MSTLEDIKKTAKDWHRADIIAALHKAGWSLRQLSLKHGYSQSST
                     LKNAVDRPWLKGERIIAEAIGISPEEIWPERYAQRNHKKFADR"
     gene            20103..20633
                     /locus_tag="PXE92_000611"
     CDS             20103..20633
                     /locus_tag="PXE92_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5759889.1"
                     /translation="MSENSLKTHYSAKELAELSLACLPKTKQGVLYQAKKQGWTTHKK
                     VGVGGEILEFALSNLPQEIQTEIRSRFMSAVVEAKPKKLPAVRAEVDVGNLTTKQREI
                     ADARMALVAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLVELVAVANAKKTAKRTIV
                     PIFSPIMPDFPLDSRD"
     gene            complement(20649..21776)
                     /locus_tag="PXE92_000612"
     CDS             complement(20649..21776)
                     /locus_tag="PXE92_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HDL5759890.1"
                     /translation="MNKLKSINLQVYIMLIAIVVIMSFFSIATDGAYLSARNISNLLR
                     QTSITGILAIGMVFVIISAEIDLSVGSLMGLLGGFAAISNVWWGWPLSLTIIVTLILG
                     VMLGAWSGWWVAYQKVPSFIVTLAGMLAFRGVLVGLTNGTTVSPISNEMTTIGQGYLP
                     DMVGMILGTIGIFCFIVWGSYQRKARQKLNLTVPSMSKDTLKYGLVAIIVLGAIYLLN
                     DYRGVPFPVLVLVILAIAGTFLARKTAFGRHIYAIGGNIDAARLSGISVEKVKLAIFA
                     LNGLLVAIAGLILSSRLGAGAPSAGQNAELDAIAACVIGGASLAGGIGSIYGVVIGAF
                     IIALLDNGMSMLDVPTFWQYIVKGGILLLAVWVDTISKKKA"
     gene            complement(21780..23294)
                     /gene="xylG"
                     /locus_tag="PXE92_000613"
     CDS             complement(21780..23294)
                     /gene="xylG"
                     /locus_tag="PXE92_000613"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HDL5759891.1"
                     /translation="MAKLLEMKNITKKFGEVVALNNISISLETGEILSLCGENGSGKS
                     TLMKVLCGIYPAGDYEGEIYFSGEKLIARNIKDTEEKGISIIHQELTLVKNMSILENM
                     FLGNEITKSGITDDNEMYLRCKTLLEQVQLDIDPNTKVGELGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEKETEILLSLIKDLQAHNIACVYISHKLNEVKAISDKICVIRDG
                     EHIGTRSAEGMSEDDIITMMVGREITSLYPHEPHNIGEEVLRVENLTAWHPTNTHIKR
                     VDNANFVLRQGEILGIAGLVGSGRTEMAQCIFGSYQGKYQGDIFLHKQPIKIKNCAQA
                     IENHIVMVPEDRKKHGIIPIMGVGKNITLSSLPQFCFGKKVINEPLEETIINQSIAKL
                     KVKTSSPELAIGRLSGGNQQKAILAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ
                     LAKEGMAIIVISSELPEVLGISDRVLVMHQGKIKADLINQDLTQEKVMEAALKE"
     gene            complement(23361..24362)
                     /gene="xylF"
                     /locus_tag="PXE92_000614"
     CDS             complement(23361..24362)
                     /gene="xylF"
                     /locus_tag="PXE92_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005576719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5759892.1"
                     /translation="MKLKSKLLAIATATLMVLSNASVAKDLKIGMSIDDLRLERWQKD
                     RDIFVNKAESLGAKVFVQSANGDATAQISQIENMLNKDIDVLVIIPFNGEVLSNVIAE
                     AKKEGVKVLAYDRLINNADVDFYVSFDNEKVGELQAKSIIGQKPEGNYFLMGGSPVDN
                     NAKLFRKGQMKVLQPLIDSGKIKVVGDQWVDSWLAEKALQIMENALTANKNNIDAVVA
                     SNDATAGGAIQALSAQGLSSKVAISGQDADLAAIKRIIAGTQTMTVYKPITNLADKAA
                     EIAVALGKDEKVEMNAQLNNGMKEVPAYLLEPVVVTKENIDDTVIKDGFHTKDAVYK"
     gene            24604..25923
                     /gene="xylA"
                     /locus_tag="PXE92_000615"
     CDS             24604..25923
                     /gene="xylA"
                     /locus_tag="PXE92_000615"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HDL5759893.1"
                     /translation="MSNYFDKISKVQYEGANSTNPFAFKHYNPDEVVLGKTMAEHLRL
                     AVCYWHTFCWTGNDMFGVGSLDRSWQKTGDLLQGAKQKAEIAFEFFQKLGIPYYCFHD
                     VDVAPEGNNFKEYQHNFNTIVDILEQKQAETGVKLLWGTANCFTNPRYMSGASTNPNP
                     EVFAWAAAQVFTAMNATKRLGGENYVLWGGREGYETLLNTDLKREREQIGRFMQLVVE
                     HKHKIGFNGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAG
                     HTFQHEIATATALDIFGSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKAGGFTTG
                     GFNFDAKIRRQSTDPYDLFHAHIGAIDVLALSLKRAAKMLEDQALQKVVDNRYAGWNQ
                     DLGLQILNGKASLEDLAKIVETQGLDPKPVSGQQEYLENLVNSYIYR"
     gene            26076..27521
                     /gene="xylB"
                     /locus_tag="PXE92_000616"
     CDS             26076..27521
                     /gene="xylB"
                     /locus_tag="PXE92_000616"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HDL5759894.1"
                     /translation="MYIGIDLGTSGVKVVLLDENQHIIAITQKSLPIFRPHPLWSEQN
                     PQDWWNATNEAMLELSATQDLQAVKAIGLTGQMHGATLLDNADNVLSPAILWNDGRSF
                     MECEELEQLVPNSREITGNLMMPGFTAPKLRWVDKHQPDIAEKVSKVLLPKDYLRLLM
                     SGEYASDMSDASGTMWLDVGKRNWNKSLLNACGLDIENMPKLFEGNQITGYLRPTLAE
                     QWKMKSVPIVAGGGDNAAGAIGIGLYQTGQAMLSLGTSGVYFVVSDKFQANPQKAVHS
                     FCHALPDRWHLMSVILSAASAVDWAVKSLGLKDVSTLFQQVEASQTASDAIFLPYLSG
                     ERTPHNDPYAKGVFWGLSHNDNQITMAKAVIEGVSFALAEGIEVLHETGVVADNIALI
                     GGGAKSVYWRQLLADISGKTFEYRTSGDVGPALGAAKLAQIALNPNQDIATFCQPLPL
                     EQVYQPTPARYAEYQQKRQKFTELYRRLKGL"
     gene            complement(27584..27907)
                     /locus_tag="PXE92_000617"
     CDS             complement(27584..27907)
                     /locus_tag="PXE92_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QacE family quaternary ammonium compound efflux
                     SMR transporter"
                     /protein_id="HDL5759895.1"
                     /translation="MNVWILLAISICLEIAATNLLKLSNGFTKAIPTIGSLALYGLSF
                     YFLSIIFRTLPVGIVYAIWSGVGIVLTALVAYFAFGQKIDLAGLIGISLIIAGVLVIN
                     LFSKV"
     gene            28031..28573
                     /locus_tag="PXE92_000618"
     CDS             28031..28573
                     /locus_tag="PXE92_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase family protein"
                     /protein_id="HDL5759896.1"
                     /translation="MAQVYIVHGYTANADKHWFPWLEQELAKCGVSCERLNMPDSAKP
                     SLDGWLNHLAQNVELTDQTVFVGHSLGCIAILNFLAKNYAKIKGAVFVSGFYQPVENL
                     PELSAFTNYYAILPSVSSFPSYVVSALDDKVVNHQYSDALAQHLHADYIRLNQGGHFL
                     DREGVTELPVVLELVKKLLE"
     gene            complement(28744..29553)
                     /gene="dapF"
                     /locus_tag="PXE92_000619"
     CDS             complement(28744..29553)
                     /gene="dapF"
                     /locus_tag="PXE92_000619"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005698184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HDL5759897.1"
                     /translation="MHGLGNDFMVVDGVTQNVYLTEEMIRTLSDRHRGIGFDQLLLVE
                     PPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKGKMVLS
                     LQEDGKVRVNMGEPIWEPSQVPFTANKFEKNYILRTELQTVLCGVVSMGNPHCVLQVD
                     DVKTAPVNELGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACGSGACG
                     TVAVGIMQGLLDNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDGFIKL"
BASE COUNT         8626 a         5915 c         6400 g         8613 t
ORIGIN      
        1 gttttagtcg ttatctagga cagcccctta ttttttgtat gtagtttgac tgctgcaagc
       61 ggtgtgattt tgctattttt ttgcaaattt agcctgtatt ttatgagcaa caataaacag
      121 cactaagact ccgatgataa ttggatcgaa tgttacgctc tttaccgacc aataataatg
      181 taccatcgcc aatactaatg caggataagc ccactggtga atcgtccccc agcgtgttcc
      241 taattttcgt tttagcatag gcagcgaagt tattgccatt atgcttagaa tgaaaaaagc
      301 agctgctcct aaaatcaaat atgggcgacc ggcaagctcg ctaaaaaata attttacatc
      361 aaggcttaat tctaacaata gatagcttga aatatgtaga gctgcccata caaacgccca
      421 taagcccaat ggacggcgta aaatttgata ctggtttttc tttaggtatt gtagggcaat
      481 accaagtaga aacattatac aaaaaatgac gattgcacca taaccgagaa aatgctccag
      541 ctctttaatc ggatcggcac ctaatattgt ttcattaccc gtatataata gctgtgctac
      601 ccaaactagc ggtaataaac agccaagatg aatgagtata cgtaaccagg ttagcattag
      661 tagttcacct ttaaatctaa gccacggtat aaatttgcca cttcattttc gtagccatta
      721 aacattagtg ttggttggcg tttgacggat aataacccgc ctgcaccaat tactcgttca
      781 gatgcttgcg accaacgtgg atgatcaaca tttggattca cattagcata aaagccatat
      841 tcatttggag caagactttc ccaagtagtg agtgggcgtt tttcagcaaa ggtgattttc
      901 acaatcgact taatactttt aaagccatat ttccaaggca cgactaagcg aataggagca
      961 ccgttttgcg gtggcagggt tttaccgtat aaaccgacgg atagtagtgt taatgaattt
     1021 aaggcttcat ctaagcgtaa agcttctaca taaggataat caatcccacc gcctagcaag
     1081 cgattttttt gccccggcat ttgtgcagga tcatataaag tgtgaaagac cacatatttg
     1141 gctttactgg ttggttttgc catctcaatt aagcgagcta actcaaagcc gatccacggc
     1201 acaaccattg accacgcttc aacacagcga aaacggtaaa tgcgttcttc tagtggaaac
     1261 gtattaagca attgttgatg atttaagcta aacggatttt caacttctcc gccaatttcc
     1321 aatgtccaag gatcggtttt gaagtttgcc gcattttttg ctggtgcact tttatccacg
     1381 ccaaactcat agaaattgtt atagcctatt actttgtttt ccggagtgag ttcaagccct
     1441 ttatttggat ccggtttaaa ctgtagtgat tgcaagtgtc tttgtgtttc tgccatactt
     1501 actttaggca atgcagaagc tgcaatacct aaacctaacg cggtaataat tttacggcgt
     1561 tggtagaaaa tagtttcggg tgtaacatct tgaattgtta attttttcat cgaactatcc
     1621 tttttttatg aattgttgtt attattttgg actcagctga tctagaattc ttacaaaata
     1681 agtgtaattt tttattgggt attccctaaa ggagatatat gaagagtcta tcttctacac
     1741 agatagaaga gattagaaag caaatggtta aatttgccac cctacaacta gccgataaag
     1801 atttagctga ggatgttgta caggatgcct taaccaatgc ctataagcat tcagcctctt
     1861 ttcggcgaga agctgcactt aaaacttgga tttttgctat tttaaagaac aaaattttag
     1921 atttactcag aacacgaaaa cgacatattc cagtcagttc tctatgtgag gaagaagaat
     1981 caccaagtgc ctttttcgat cgccacgatc attggttgga acatcaagat gtaactgaat
     2041 ggaggggggt agctcaatca acttaccaaa aagaattttg ggcaattttt gatatttgtt
     2101 taaataaatt acccgcccag caagcacgag tatttatgat gcgtgaacat ttggagatga
     2161 gtagtgcgga aatttgccaa gaatgtgaaa tttctctctc taacttaaat gtattacttc
     2221 atcgtgctcg tttacgttta caagagtgtt tatctcgcaa ttggtttaga gaggaatcaa
     2281 aatgaaatgc aggcaagcaa cagaacttat ttcacagtct tgtgatgaga aacttcgttt
     2341 gcaacaacat atgcgtttgc agttgcatct tttggtatgc cctaaatgcc gaaattttaa
     2401 taaaaatacc aagaaattag gcaagatatt aagagcttac tgtaacgata aagatgctcc
     2461 gttctgattt attatacatt ttaaaaggag aaaaatatgc gttattggtt aataagttta
     2521 agcatactat taagtggctg tgtcgtgccg gttactccta cggggcaagc cggtatccct
     2581 atgccgatta taattggtgt ctcagatcca cttgattcca aagaggttca catttgtact
     2641 ctaaagccat ttactcagga atatcgtagt gaacatagta gccgaggcag agccaaatta
     2701 aatgtacaaa agcaatgccg tgcaaaccac agtgaaatgt tttgtgaaga aaaagatatt
     2761 gtttgcaaaa cctatgatta gttaaacaag cggtcgtatt ttatctgttt tttgcaaaat
     2821 tttcctaaaa tttgaccgct tgtttattta agcagataac atcaaaattt tatgaggatt
     2881 gtctatgcaa cccatcaata ttgccatcgc aggtgccggc ttttccagcc gagtttttca
     2941 tatcccgttt ttgaaacaag atgctcgttt taatattgta aaggtatatg aacgaacctc
     3001 taacaatgcg gcagaatggt tgccgaatgc agaaacagtg cgggatttca acgctctttt
     3061 aacgccagaa gtggatttag tgctgattac cacaccgaat caaacccatt atgcaatggt
     3121 aaaagagtca ttgcttgcag gcaaacacgt tttagttgaa aaaccgttag tggcaacagt
     3181 ggctgaggcg gaagagttgg cggaacttgc aaagcggcaa ggaaaggtgc tttatgtgta
     3241 ccaaaaccgc cgttgggaca gccatattgc gacggcaaaa tcgctaatgg agcaaaattt
     3301 actgggagag ttggtagatt gcgaaattcg ttttgaccgt tatgcgaaag agaaaaatgt
     3361 taaagtatgg aaagaatcag gcgagcttgg tacaggttta gtgtatgatt taggcgtaca
     3421 tttaattgac caagctttgt atcttttcgg gaagccggag gcggtgtatg ctgatgtgcg
     3481 ttatcagcac gaaggggcat tggttgatga taactttgat attcagctct attatgctaa
     3541 cggttttaaa gtggtgctga aagccagccg atatgctcgt gaaccaagcc cgacatttgt
     3601 attacacgga aaattaggct cttatctgaa acaaactccc gataatcaag aagatttgct
     3661 gaaaaatggc gtacaaccta ttggcaaaga ttggaatatc gaagaaaagg agaactgggg
     3721 aattttacac actgaagtgg aaggtaatgt ggttcgccag ccctatcgaa atgccgaagt
     3781 cagttatcaa aacttgtttg atgatttgta ccaagccatc gctcacaatg ctgagccaat
     3841 tatcaaactc gaagacgtca tttttgtgct aaaagtgatc gaaagcgtat ttgaaagtgc
     3901 aaaattaggg caaaaaatct atttgtaaaa ttttgaggat ttttgaccgc ttgttattct
     3961 ctctgatggc gcaagcgtcc acgcttgtgc ctattgatta ttttagcttt gtttctagta
     4021 caagcgtgga cgcttgcact atctaaaaaa tcatctcccc cattgctttt cccatctcga
     4081 ttggctaata tgcaacctca atccgtagtt agaatactta atatgttaag ttttaactgt
     4141 tttttcactc taataaggat catttcaatg aataaactta ttgcctcttt ggtggcttca
     4201 agctgtgcga cggcttttgc tgctcctgtt caacagaaca atttccacac cactacccac
     4261 acttacgaat ttacgcaatc ttatgattta gttgtgccac aaggctcgaa aggaacaact
     4321 aatttgtgga ttccgttgcc gtctgatacc gattatcaaa cggtaaaatc gatagagttt
     4381 gagggaagtt acaaaaacgc ctatatcaca gaaaataacg cttatggtgc aaaaaccttg
     4441 tttgccactt gggatactga tgcaccaaag cgtgatctaa aagtgaaaat ggtgatccaa
     4501 acccaagatc gtgagcctat ggctcaaggg gcgttggcaa attaccaaat gccggagaaa
     4561 atcacttatt ctgttgatgt attggagtat ttaaaaccaa cggctcacat taaaacagac
     4621 ggtattgtga aagaatatgc cgataaaatt gtgggtaacg agcaaaatcc gttgaaaaaa
     4681 gcggaactta tccacaagtg gattgttgat aatatggaac gtgataactc ggtgctaggc
     4741 tgtggcgatg gcgatgtgga gaaaattctc accaccaaag tgctaaaagg taaatgtacc
     4801 gacatcaact cggtgtttgt agcacttgct cgtgcctcta acattcctgc tcgtgaagtg
     4861 tttggtattc gtttagggca agcggtaaaa atggggcaat attccaaaac cgcatttggt
     4921 agctcaaaag atggcgtggc gaatgaaagc ggcgggcagc actgccgtgc agagttctat
     4981 ttagcaggct tcggctgggt gcctgtagat tctgccgatg tcgctaaaat gcgtttagcc
     5041 gagaaaaaag acgtggatga tgctgatgtt caagcggtct cgaaatactt attcggcaac
     5101 tgggaaatga actgggtagg cttcaatcac ggacgtgatt tcgatttata tccacaaccg
     5161 gaacttacac cactgaataa ctttggctac ccttatgctg aggtaggtgg tgacccgtta
     5221 aactcgtttg aggcgaaaga atttggctat gaattcatct ctaaagagtt ataaccataa
     5281 atttatcaca atgtgcgtga ccgccatagt gtcggcggtg acctccacat tctgttgtat
     5341 tgggccactg gtttatttag tgtttggcat ctcttcccct tggttgatgg agctaaacca
     5401 actggagttt ctacaactgc cgatgttgct gatttcgctc gctgcgtttg gctatggctt
     5461 ctggttgctg aatttttcca acaaaatcat ctgcaccaaa tacttctccc gcagaaccct
     5521 ggtcattttg tattgggtag tttctgtggt ggtgatgttc tttttaactt acccttatgt
     5581 attgccttac attttggaaa tgtggagcgg agaataaaat gaaaaaatat atcgcaacga
     5641 tgctgttggc ttttggtttg gttcattcaa gctacgcaca agaaaaaaca gctcaaattg
     5701 aaacgaaaca agcagagaaa accgtcgtcc tccatattcc ggaaatgtac tgccagctct
     5761 gcgtttattt agtcaataaa gaactacgag cagtagaagg tgtgatttcc accaaagcct
     5821 caatgaaaga gcgaaaagcg actgtggtgg taaaagaaag tgtggataac caagccctga
     5881 tacaagcggt cggaaacctc aaatatactg caaaagtcat tgaataaaac caaagctcaa
     5941 acattattgt ttgagctttt ttaatttagc cttccttttt tcccccatct aatattcaaa
     6001 cttcactttt gttttgattt aaaatgaaaa aataatttat tttgaaagtt gtttctcatt
     6061 ttgtgatcgc tgtcacagtt tttaaaataa aaataattta ctatttgcac atctcataac
     6121 agagatgaaa gaaaaatatt ttattttgaa aaacggagat cggtatgatt gaagcaatta
     6181 cacacggagc agaatggttt atcggcctgt tccaaaaagg cggtgaaacc ttagtcggta
     6241 tgataaacgg tattttgcca ctcttaattt cattattggt tgtaatgaat gccctgatta
     6301 aatttgtagg gcaagatcgg attgaacgac ttgctcaacg tagtgccgga aaccctattt
     6361 cacgttattt gatcttaccg gtgatcggca ctttcgtttt ctgtaacccg atgacattaa
     6421 gcttagggcg tttcttaccg gagcgttaca aaccaagcta ctacgccgca gcctcttata
     6481 gttgccactc tatgaacggc ttattccctc acatcaaccc gggtgaatta ttcgtttatt
     6541 taggtattgc cagcggttta accaccttag gcttaccact tgggccttta gccatcagtt
     6601 atttattagt cggtatgttt accaatttct tccgtggctg gataacagac ttcaccaccg
     6661 cattctttga aaaacgaatg gggatcacct tagatagaga agtacattta tcccactaac
     6721 caagtaactg aaatacagag gaatagatta tgagcaacaa agcgatttac attgaaaaag
     6781 gcaacggtgg ttggggtggt ccattaacat tacctgttgt ggaaggcaaa aaagtgcttt
     6841 atatgaccgg cggcactcgc cctgcgattg ttaataaatt ggtggaatta accggctggg
     6901 aagcggttga tggttttaaa gaaggcgaac cgccggcaga agaaatcggg attgcgatta
     6961 ttgattgcgg tggggtatta cgctgtgggc tttacccaaa acgccgtatt ccaaccatta
     7021 acattcactc caccggtaaa tccggccctt tagcagaatt tattgtggaa gatatttatg
     7081 tttcagcggt gaaagaaaac aatattcgct taattgatgc cgatggaagt gtgcctgtgg
     7141 caacagagca agcaaaacca acttcatcaa cgacagcaac ggcaaaagag tatgactcca
     7201 gcaaaaaaat caccgaacaa agtgatggtt tattagcaaa aatcggtatg ggaatgggat
     7261 cggtggcggc gttattcttc caagccggac gagacactat tgatacggtg cttaaaacca
     7321 ttttaccgtt tatggcattt gtttctgcgt taatcgggat catcattgcg tcaggtttag
     7381 gtgatgtgat tgcccacggc ttgacccctc tggcaaacag cccaatcggt ttagttacac
     7441 tggcgttgat ttgttccttc cctctccttt ccccattctt agggccggga gccgtgattg
     7501 cacaagttat cggcgtgtta gtcggtacgc aaatcggttt aggcaatatt ccgccacatt
     7561 tagcactgcc ggcactcttt gctattaatg ctcaagccgc ttgtgatttt attcctgtgg
     7621 gtctttcaat ggcggaagca aaacaagata ccgtacgggt gggtgtaccg tcagtattag
     7681 tcagccgttt tttaaccggt gcaccgaccg tgctgattgc gtgggcagtt tccgcattca
     7741 tctaccaata attaaccacg atacaagcgg tggaatttga aaaatttttt gcaaaatgca
     7801 ccgcttgtca aaacgagaga acatttatat gacgattatt tatcaaacga cctttaccaa
     7861 aatcgggaat tttgctcagg aatcattaac agacgatatg ttaatcactt ttaaacaagg
     7921 cgcaccggca gatttacaag attactgctt cattcataat ccatctgaat taagtagccc
     7981 tttagaagta ggcgatatcg ctgaatttga tggcgtagct tatccgatta cggcagttgg
     8041 tagcgttgca tctgaaaact tatccgccct cggacacatt accttccgtt ttgacggggc
     8101 aaatgatgcg gaatttccgg gaagcgttca cgttatcgga acaccgccgc aaggcttaac
     8161 agagaactca accttgatta tcaagcgtga ttaatgacgg attaaaaata atttcaaatt
     8221 gaaaatttag aggaatacat tatgaacaat gaaaaaaaag ttgctatcgt tgttggcggc
     8281 ggtcaaacac ttggagcttt tttatctgaa ggcttggcag atgccggtta tcgtgtggtg
     8341 gttgctgact taaacggcga aaatgcacaa aaagtggcag ccgacattaa tgccaaacaa
     8401 ggcgaaggaa atgcgattgg ggtgcaagtc gatgcggctg atgaaccaag cgttgaagca
     8461 ctagctaaag caacagatac cgtattcggg cgtgccgatg tattggttta cagtgcaggc
     8521 acagcgaaag catcgcctat ttgggatttc aacttaaacg attttgattt gtcggtaaaa
     8581 gtgaatttaa ccggttattt cttaaccgca aaacacttct cccgcttaat gattcgtgac
     8641 ggtattaaag ggcgtatcat tcaaattaat tctaaatcgg gtaaagtagg gagtaagtat
     8701 aattccggtt atagtgcagc gaaatttggt ggtgttggtt taacacaatc gttagcatta
     8761 gacttggcag ataaaggcat taccgtgcat tcattaatgt taggcaattt attgaaatcg
     8821 ccgatgttcc aatcgttaat tccgcaatat gcggcaaaac tcggcattcc ggaaagcgaa
     8881 gtagagcaag tttatattga taaagtgcct ttaaaacgtg gctgtgatta tcaagatgtg
     8941 ttgaatgtct taaaattcta tgccggcgaa gaggcagctt attgcacagg acagtctatt
     9001 aatattaccg gtggtcaggt aatgttctaa gcaaacaagc ggtcaaattt gtcgattttt
     9061 ttacaacaat ttgcaaaaaa tgactaaaat aaaccgcttg ttaattcgcc acaccggtta
     9121 atatgccaca ggggaaagcg tattgttttg aaatcgcagg tacgtttagg ctctgtggct
     9181 ttttattaag gagcaatgat ggattcaatt acacttctga ttatattggc aatgataatg
     9241 tggctgttac aagccgtttt gggttggctt caaattaaag cctttaacca agcctttatg
     9301 gaaatcagta agaaaggcaa agtaacggtt gggcgtaata gtggtcgttt taatcctaaa
     9361 tcggttattg tgttggcgtt tgatgatgag aaaaaagtgg tagatagcct ttgtatgaaa
     9421 ggattttccg tctttgccag accgcagaaa ttagcgtctg tgattggttt gtctcttgat
     9481 caaattgtgc cggaaaaaat ctttccaagc gataaacgtt cacaatttgc cttaaaagtg
     9541 gcgatatctt ccggatatag ttgctcagat caaaaataat gcgatttttt atttcatttt
     9601 gaatattttt ttagttaaaa atgagataat ggagaataaa tatgcagatc aatagtgtca
     9661 tctttgatat ggacggggta atgattgatt cagaacccca atgggcagag gctcaaattg
     9721 cagtattagc cgacttaggt attaatatca ccgagcaaga ttgcgaacaa ctcaccagag
     9781 gtaagcggat tgatgagttg agcgacactt ggattaaaaa atttcagtta tctgtttcca
     9841 accaagcatt aagtgaagcc attttggcac acggttgtgc tgcgattgaa caacacggca
     9901 aagcattaac gggtttatat gaattattgg atttcttaaa atctaatcag atcaagttag
     9961 ccgttgcaac ctcatcgccg ccggtggtga ttaaagcggt gtttgatcgc ttaaaactgt
    10021 gggattattt cccgattcga tgcagtgcaa tggacgaaga atatggcaag ccacaccctg
    10081 cggtctattt gagtgcagtg aaaaaattag gcattgaaaa acaagagtgt attgttattg
    10141 aggacagtgt aaccggctta attgccgcca aagccgctaa tttaactaca tttttggtga
    10201 ataccgatta tcaaaatgaa aaattttcaa ttgccgataa aagaatggca tcgctactag
    10261 atgtcattga aaaattaaaa cagcattagc acagattagc tcgctccaat ctttgctaaa
    10321 ttggaggaac aatgaaacct tttgaaagaa gacagcaaat tttagcctat ttagctcagc
    10381 acggtagaac cgaagtggac gtgctggcag actattttaa gctaactggt gcaaccattc
    10441 gtaaagattt aacttcactt gaagaagata agaaagtctt gcgtacttat ggcagtgtag
    10501 tcttaattga tgaagaaatt cttgaacggg aagagaaaat caataaagag gacaaagacg
    10561 ataaaccgct tgcacagaaa accggcatta atcttcaaca aaagcaagct atcgggcaaa
    10621 aagctgcaga gttaattaat gagggaaact ctattatttt tgatgcaggc agcacagtgt
    10681 tacaaatgat tccccattta aaagcatttg ataacctctc tttaatgaca aatagtttaa
    10741 ctattttcaa tgagattttg aaactcaata aatcctataa cttactgatt tccggtggta
    10801 catttcgtga gaaatcagct tcatttcacg gttattttgc tgaatccgct tttattggtt
    10861 caaattttga catactcttt attggcacag acggactaga tttagacgtt ggattaacga
    10921 ctttcaatga agtatataaa gtcagttcgc taatgtgtga tgcggcaaat aaaatcgtct
    10981 tacttgccga ctccagtaag tttggacgta aaagtccgaa tattgtgtgt gggttagaaa
    11041 aaattcatac tatcattacc gatgaaggat tatctcaaga aatgagagaa cagattaaag
    11101 cgaaagggat tgagctgtta gttgtataag ggcgtaaaaa tgaatcattt agacagtgca
    11161 aaagaaacgt taaacctcta tgctcagcag attatcacgc taaaccatcg actttctgaa
    11221 gaatttaatg aggtggtaaa tatgatactc gcttgtcaag ggcgagtggt tgttggcggt
    11281 attggaaaat cggggctggt tggcaaaaaa atggtggcaa cttttgcctc caccggtaca
    11341 ccgagctttt tcttgcaccc gacagaggct tttcacggcg atttgggaat gctgaaaccg
    11401 attgatatgg taattctgat ttctaacagt ggtgaaactg atgatgtgaa taaactgatt
    11461 ccaagcctga aaaatttcgg caataaaatt attgcgatga caggtaatcc ttactccaca
    11521 cttgggcgaa atgccgatgt gattttaaat attggtgtag agcgtgaagc ctgcctgaat
    11581 aatctagctc caaccagctc tactttggta acgatggctt taggcgatgc gttagccatt
    11641 gcgctaatga aagcccgtga tttccgccct gaagattttg cccgctacca cccgggtggc
    11701 agtcttggtc gtaaattatt gaacagagtg cgagatgtga tggtgcgtaa agtgccaacc
    11761 gccagcttag acaccacctt taccgaatgt ttatctgtga tgaacgaagg gcgtatgggg
    11821 gtggcggtaa ttatgcaaga cgataaattg gaaggcatta ttaccgatgg tgatatccgc
    11881 cgcacattag cgaaattcgg ggcggagagc ctaaataaaa ccgctgacga aattatgacc
    11941 cgtaatccaa aaaccattaa cgataccgaa tttttagcca aagccgaaga tttaatgaaa
    12001 gagctgaaaa ttcactcatt aattgcagtg aatgatgagg gtaaagtaac gggattgatg
    12061 gagttctcta gttaatttat agatgtaacg atggcgcaag cgtttacgct tgtgccgttc
    12121 actgacatat atcaatatct aataaaacag gtaagttgtt agcataattt cttgcactgc
    12181 tatatttcca ttcaaatgcc tcgcatacaa aaccgcttac gatagggttg ttgtgaatat
    12241 ggtttagctt ttcatcaaaa aatttctgag aatagattgt tatcggttgg ttatgatgtt
    12301 gccaaagttg gtattgcttg acattatttc gttgtttagc tgcccgagta aacatccata
    12361 ataaccattc ttttctactt tcttggggat ttgttttaat ttgctgaatc aacatttaga
    12421 tgtaaatgtt ttaaaatctc ttattaaatc tgacgggttt tggtcttttg cttgaaataa
    12481 taaatgaata tggcttggca taatgcagta gccatataaa atcatccctt tttgttttcg
    12541 acaataattc aatgattgga taatggtttg aaaataatct tctcgaataa atagatcaat
    12601 ccaataaact gttgcaaaac taacaaaata ggctccgctc ttctcataaa acttatattt
    12661 tctactcatt atgaacctct aaagtgcagt ttatgctgat agtaatatag gtgaacagtt
    12721 agggttagca attcatttta ttttttcgat gtagatcgca aaaatagaat tatgcttggc
    12781 acaagcgagg acgcttacgc catctttact ccaaaaatgt gagatagatc acattttcaa
    12841 atctgcccaa aaaaatttaa tgtgatctac ttcacatttc tgagagaaac atttttgtaa
    12901 cttttgaaag tggtgctaat ttaagcacga ttttttcaac cctaattttc tctccttttt
    12961 tgaggtttct atgtctaatt taaaagtgaa agtccaaggt tttgggcgtt tcttatcgaa
    13021 tatggtgatg ccgaatatcg gtgcctttat tgcgtggggc tttatcaccg ccctgtttat
    13081 tccaaccggt tggttgccga acgagacttt tgctaaactg gtcggtccga tgattactta
    13141 cttgctgcca ctgttaatcg gttacagcgg tggtaaatta gtcggtggtg agcgtggtgc
    13201 ggttgtaggt gcgattacta caatgggtat tatcgtgggt tctgaaatcc cgatgttctt
    13261 aggtgcgatg attgtaggtc cattaggcgg ctgggcgatc aaaaccttcg ataaagcgat
    13321 tgacggcaaa gtaaaaagcg gttttgagat gttggtaaac aacttctcgg tcgggatcat
    13381 cggtatgatt ttggcaatgc tttcatttgc tttcattgga ggtatcgtca cccaaatctc
    13441 tgcggcatta ggtgcaggtg tgggggcgtt ggttgaagct ggtcttctgc cagtaacctc
    13501 tatcatcgtt gaaccggcga aaatcctatt cttaaacaat gcgatcaatc acggtgtgtt
    13561 cacgccattg ggtacagcac aagcacaaga agtgggcaaa tctattctgt tcttgattga
    13621 agcgaacccg ggtccgggct ttggtatctt gcttgcctat atgttctttg gtcgtggcac
    13681 agcaaaacaa accgctggta gtgcgtcaat cattcacttc ttaggcggta ttcacgaaat
    13741 ttatttcccg tatgtgttaa tgagcccacg cttaattctt gcagtgattg caggcggtgc
    13801 aaccggcgtt ttaaccaact cattattagg tggcggttta atcgcaccgg cttccccggg
    13861 ttctattttt gcgattttag caatgaccgc accgggtgct cactttgcag ttgttgcctc
    13921 cgtgattctt tcttgtgccg tgacttttgc gattgcgtca atcttactca aaacccaaaa
    13981 aggtgaagcc tcattggaag atgcacaagc acaaactcaa gcgatgaaag cagaaagcaa
    14041 aggcgtagta aatggtaaca tcaacaaaat ctatgtagcg tgtgatgccg gtatgggttc
    14101 aagtgcgatg ggtgcgagta tgttacgcaa aaaagtgcaa gcggcaggtt taaacattga
    14161 agtacaaaac ttagcgatca acgacttacc gcaagacgca caactggtga ttacccacaa
    14221 agacttaacc gctcgtgcaa cacaacgtgt ggcaacggct caacacttat cgctcactaa
    14281 cttcttagac agtgcgttct atgacagctt agtggcaaaa ctggctaacc accagccaca
    14341 acaagcggtg caaaatacac aaaattttgc aaacccggtg gaagaacctc aagccgaagg
    14401 gttaaaattg caagcagccc aagtcttttt aggcttacaa gctaacagta aagaagaagc
    14461 gatccgcttt gccggtgagc agttagttaa agcgggcttt gttcaaccaa gctatgtaga
    14521 tgcaatgttc gcccgtgagc aaatggtttc aacttactta ggcgaaggct tagctgtgcc
    14581 acacggtaca tctgatgcca aagacagcgt actgaaaacc ggtatcgtgg tctgccaata
    14641 cccgaacggc gttcgcttca ccgatgaaga agacggcgtg gcgaaactgg tggtcggtat
    14701 tgcagcaaaa ggcaacgacc atatccaaat tttaagtgca attaccaacg cactggacga
    14761 tgaacaagca atgaaaacac tgacctcaac aaatgacgtg gaaaaagtgt tagcattatt
    14821 atctaaataa tcaccctgtt gtgtaggggc gggtcctgtg cccgcccatt atcctacaaa
    14881 atttagggcg ggcacaggac ccgcccctac gttttataga ggaacaatca tcaatgaacg
    14941 cactccattt tggtgccggt aatatcgggc gtggctttat cggcaaattg cttgctgatg
    15001 ctcgcatttt cgtgactttt gccgatatta accaaactca aatcgaccaa atcaaccaaa
    15061 acaagcaata cggcgtgaaa atcgtgggcg atgacagccg tgtggaaatt gtcaaaaaca
    15121 ttgcggcaat taactcgaaa gacgaaaatg ccgtgattga gcaagtgaaa aacaccgatt
    15181 taattaccac cgcagtcggc ccgaatgtgc ttggctttat tgccccactg ttcgccaaag
    15241 cgttagtggc tcgtgtggaa agtggcaaca cccaaccgct gaacattatc gcctgtgaaa
    15301 atatggtgcg tggcacaact ttctttaaag gtaaaatttt tgagcattta actgccgagc
    15361 agcaagcaga aattgaaaaa gtggttggtt ttgttgatag tgcggtggac agaattgtac
    15421 cacctgccga gccgaaccct gctgatccgt tggaagtcac ggtggaagag ttcagcgagt
    15481 ggattgtgga tcaaacccag ttcaaaggtg acattccaaa catcaaagga atggaattaa
    15541 ccgataacct gatggcgttt gtggaacgca aactgttcac cctgaacacc gggcatttaa
    15601 tctgtgccta cttgggcaaa caagcgggcg tgaaatggat taaagaggcg attgcgattg
    15661 aggaaatcaa aactcaggtg aaagccacaa tggaagagag cggtgctgtg ctgattaaac
    15721 gttacggctt cgacccacaa gcccattcag cgtatatcga aaaaatcctc aaacgttttg
    15781 ccaacccgta cttaaacgat gacgtaaacc gtgtagggcg tgagccaatc cgcaaactga
    15841 gcgaaaacga ccgcttgatc aaaccgttgc gtggcacgtt ggaatatggc ttaccgtatc
    15901 aaaacttggt caaaggcgtg gtgatggcat tgcaatatcg caatgaggaa gacccacaag
    15961 cggtcgaact tgccgaattt attgcaaatc acggtgtggc ggcagcggtg gaaaaataca
    16021 ccggtttaac cgaccaagcg gtcattgctc aagtggtgga attatatcaa taattcttga
    16081 cactatgatg gattacatcg acaaactcag tgaggaaacc accctgcgtg gtttccttag
    16141 cattgccaat caacgctttg ccaaagcggt tgaacagttg attgaacgag tgtttcgcaa
    16201 aacggacttt gcgttaaaat ccgtggtgga ttccttgttt gaacatcaag gaccgctggc
    16261 tgacattgaa gtacgtttaa aagtgttgct tgggttgggg gtgatctcac ctaaagtgtt
    16321 tgaagatatc tcgcttttcc ttgaagtcaa acagcatttg aatgaggaag aagacgagtt
    16381 cgcattttct cacccggcgg tagtgaaatt tgccaaagat ttgcaccata ttgatttttt
    16441 gcctatcaat gaattgctga atatgaaagc gagtgcagcg aataaagatt cgatgctctt
    16501 tcaaatgcag caaatgcggt tggaaaaaat ggtacgttca agcctgattt tggcggtaac
    16561 tgaaattgac gaacaactga atgtggaaag cccattgtaa aaatttcgtc aaaactaacc
    16621 gcttgtactg agcattcacg ccgtacgtga ttgctttttc ctttcttttt gatcttatcg
    16681 gcttttttct ttgcttaaag cggtgtaatc tatccctaac tattttggag gatatggtta
    16741 tgcaatcgtt gctctctttt gtgccggatt ttcttaagca agaactgttt tgggtaatgg
    16801 cgttattggt atttgcgatt tggcaattta tccaaaacaa gttgcgtatg gacgtggttg
    16861 ccttaattgt aatgctgttt tttagcctga ctaatatttt atcagtcaaa gaagtgttgg
    16921 caggcttaag tgacccaaac gtggtgctga ttgcgttgct ctttattgtc ggagaaggtt
    16981 tggtgcgaac cggcgtggcg aaccaagtca gcgattggtt gatgcgggtg tcgggagcga
    17041 gcgaaaccaa agtgctggtg ctgctaatgc tctgtattgc cgggcttgga tcttttatga
    17101 gttccaccgg cattgtggcg attttcattc cggtggtgct tgccatttgc tcgggaatgg
    17161 gaatttctcc tcgccggtta atgatgccgt taagtgttgc cggacttatc agcggtatga
    17221 tgaccttaat tgccacacca cccaaccttg ttgctcattc cgaattagta aaatcaggtt
    17281 ttgaaggctt caatttcttc agttttactc cgattggatt aattatttta gtgatgggca
    17341 tcggctatat gctgattgcc cgccgttggt tggataatgg tgagcaaagc aatactcaca
    17401 gtcaggctca aaaattttca atgtcgcagt taattgaaga gtatcaactt aaagagcgag
    17461 ccaaaatggt gctggtggaa gcagattcag actgtgtcgg caaatctatc gggcaactga
    17521 atttacggat tgagcaaggg ctaaacatca ttgcaattca acgcactaag cggtttagaa
    17581 aaattaccgt cagtgcctcg gtaaacgaaa ttttccagcc gaaagatatt ttactgcttg
    17641 atactgccct cgatgatgaa acttaccaac aacgctgtga acagctcaaa cttcgcccga
    17701 ttgagctaaa aggcgaatac ttttcctcac aatatcgctc ggtgggtatg gcggaaattt
    17761 cggttatgcc tgaagcagaa tgtatcggta aaactattcg ggaactcaaa ttccgctcaa
    17821 gataccattt aagcattgtc ggcttaaaac gtggtgatga aatcatacaa gaggaactgc
    17881 tcgatacgcc actcaaattc ggcgatattt tattggtgat gggcgtatgg caacaaattc
    17941 accgtatgga cgacgatcat cgagatttct tcttgcttag agatccggca gaaagtaaaa
    18001 acgcccctcc ggcgttaagc caagcccctc acgctctgtt ctcagtgctg actatggtgt
    18061 tgctgatgat taccggcatt gtgccaaacg tgatggcagc gttgattgcc tgcttaatgt
    18121 taggcaagtt ccgctgtgtg gatatgaaaa gtgcttatga ttcgattcat atgccaagca
    18181 ttgtgttgat tgtggggatg atgccgtttt ctattgcctt acaaaaaacc ggtggtgtgg
    18241 atttaaccgt taggcttcta cttgatgcaa tgcaaggctt agatgtacat tttgttctaa
    18301 tagtattatt tgtagtaaca gcgattatca gtgcttttat ttccaacaca gcgactgcaa
    18361 ttttggttat gccgatagcc attgcgattg ctaaccaact tggctactca ccggcacctt
    18421 ttgtgatgac ggtcgctgtt tcagcctccg ccgcttttat gacgccggtt tcttcaccgg
    18481 taaatacgat ggtattagca ccggcaggct ataaatttat tgatttcgtt aaagttggtg
    18541 tgccgtttac tgtactggtg atgctggtgt cggtgtttgt gattccgatg ttatttccgc
    18601 tctaaacact cctctaaatt acaagcggtc atttttggta atctgacgtt gacggtaaaa
    18661 ttgttgagta tgtctggcaa catagtgtgg ggtactgatc ttttttgcat agagagaaag
    18721 aaaaaaattt gggcggaaaa ataacggcga ggctaggaaa tacaaggctt cgccgttttt
    18781 gtttggggtg agttatgcaa aaaacgaaaa tgagcaaaaa tagaaaaaaa tgggctattt
    18841 ttacgttatt ttttgcatag gtctgagcag gtttaaacgg attttaaaac aattttaagc
    18901 gccctcatct cggctggctc ggttgcgttg ctctaagctg tgaatgaggt cgtgtacacg
    18961 ttgtttatcg gcacaggtta ggttggtgtt attatccacc gtgcagccgg caatcaccgt
    19021 ggcgttatcg ccgttttgaa tgatgacgtt gctgttatta aacacctgta taggctcttg
    19081 gcttggctgg ctgttgccgg cagtgctatt gtctctgaat aatttgagaa tggcttgttt
    19141 gtccatattg tcccctgtta tgccaccagt ttgagtaatc ccaccatttt ttctttttcg
    19201 cttttttctt gcgtgagaag ctcgtagaaa gcccacacca tttgggcttt tccggcaggc
    19261 ttcatttccc gttgggtaat ttccagcacc tcttccaacg tttctattgc ctcttgtaac
    19321 ttagctttga taacaactac ttccccttct tctgtctgcg gttttgtggc atacacaggc
    19381 tgtggctctc ttgtgacatt aaggctttgc gagtgtcgct cacctgttaa taggtagcaa
    19441 ggctcaacgt taagtatttg tgacaaagcc ataagttttg atataggagg ttctcttgta
    19501 tcagcctccc acgcttgtaa tgtagatatt gcaatacctc ctagggcatc acaaacctca
    19561 gatctactta attttgcatt ttttctgctc tgttctattc ggttaccgaa accaataacc
    19621 tttttacact ctattttcat aactgtaaaa aaataagttg agatttttag ccttttacac
    19681 tctaaaaacc tataaataaa tcaataactt acagcaaact aagtttattt gctcataaat
    19741 caactataaa gcaacctttt tacactttat ttttagtaaa aataggtata ttatctaaat
    19801 cgttaagcga aaggagttat ctaatgagta cattggaaga tattaaaaaa acagcgaaag
    19861 actggcatag ggccgacatc atcgctgctt tacataaagc gggttggtcg cttagacaac
    19921 tctcattgaa gcatggctac agtcaatcca gcaccttgaa aaacgctgta gatcgtccgt
    19981 ggttaaaggg tgagcgtatt attgccgaag caatcggtat atcacccgaa gaaatttggc
    20041 ctgaacgtta tgctcaacga aaccataaaa aatttgccga cagatagctt aaagaggttt
    20101 ttatgagtga aaacagtcta aaaacacact attcggcaaa agaattggct gagttaagtt
    20161 tagcctgttt acctaaaaca aagcaaggag ttttgtatca ggcaaagaaa caaggatgga
    20221 ctactcataa aaaggttgga gttgggggag aaattttaga atttgcactc tcaaacctcc
    20281 ctcaagaaat ccaaaccgaa atccgctccc gctttatgtc ggcggtggtg gaagccaagc
    20341 cgaaaaagtt accggcagtg cgtgcggagg tggatgtggg aaacctgacc accaaacagc
    20401 gagaaattgc tgatgcacga atggcactgg tggcgtatgt gttggaactg gaaggctcaa
    20461 tgagccggat taaagcgata acctaccttt gcaaccttgc caaacaaggc gaaatgccac
    20521 cgcacttggt ggagctggtt gccgtagcaa atgctaaaaa gacggcaaaa cgcacaatag
    20581 ttcccatttt tagcccgatt atgccggatt tcccgttgga tagtcgagat tgaccgcttg
    20641 ttatccaatt aggctttttt cttgctgatg gtatctaccc aaactgcaag cagtagaatt
    20701 ccacctttaa cgatatattg ccagaaggtt ggcacatcaa gcatactcat accgttatcc
    20761 agcaaagcaa taataaatgc tccaataact acgccataaa tgctaccgat accgccggct
    20821 aaactggctc caccaatcac gcaggcggca atcgcatcta attcggcatt ttgcccggcg
    20881 gaaggtgcgc cggctccaag acgtgagctt aaaatcaagc ctgcaatggc aactaataag
    20941 ccgtttaagg caaaaatcgc aagtttgact ttttcaactg aaatccccga gaggcgagcg
    21001 gcatcaatgt tgccaccaat cgcataaatg tgacgcccga aggcggtttt tctggccaag
    21061 aatgtgccgg caatggctag aatcaccaac accaataccg ggaatggcac accacggtaa
    21121 tcattgagta ggtagatcgc acctaatacg ataattgcaa ctagtccgta tttcagcgtg
    21181 tctttcgaca tagaaggcac agtaagattg agtttttgtc tggctttgcg ttggtagcta
    21241 ccccaaacaa taaagcaaaa tatcccgata gtacctaaaa tcatacccac catatcaggc
    21301 aaatagcctt gaccaatggt tgtcatttca ttgctaatcg gtgaaacggt tgtcccgttg
    21361 gttaagccga ccaatacacc acgaaacgcc agcataccgg caagagttac aataaaggac
    21421 ggcacttttt gataagcaac ccaccaaccg ctccaagcac ccagcatgac gcctaaaatt
    21481 aaagtaacta taatagttaa cgagagcggc cagccccacc atacattact gatggcggca
    21541 aatccaccga gtaagcccat tagcgagcca accgataaat caatttctgc ggaaataatc
    21601 acaaatacca taccgatggc aagaataccg gtaatggagg tttggcgtaa caggttggag
    21661 atatttctgg cacttaaata agcaccgtca gttgcaatag agaaaaagct cataatcaca
    21721 acaattgcaa tcagcataat ataaacttgt aaattaatcg attttaactt attcataggt
    21781 tactccttga gtgccgcttc cattactttt tcttgggtaa ggtcttggtt aatcaaatct
    21841 gctttaattt tgccttggtg cataaccaat acacgatcac taatgcctaa aacttcaggt
    21901 aattcggagg aaatgacgat aattgccata ccttctttag ctaattggtt gatgagctta
    21961 taaatttcat attttgctcc cacgtcgata ccacgggtcg gctcatctaa aatcaggatt
    22021 ttagggttaa gcaataggca ttttgccaaa attgcttttt gctgattacc gccacttaac
    22081 cgtccaattg ctaattcagg cgaggaagtt ttcactttca gttttgcaat agattggttg
    22141 ataatggttt cttccagcgg ttcatttatt acttttttgc caaaacaaaa ttgcggtaat
    22201 gaagagagag ttatgttttt acccaccccc ataattggaa tgatgccgtg ttttttgcga
    22261 tcttccggca ccatcacaat atggttttca atcgcttgtg cacaattttt gattttaatc
    22321 ggttgcttat gcagaaaaat atcaccttga tatttgcctt ggtaagagcc aaaaatacat
    22381 tgtgccatct cggttcgccc tgaaccgacc aaaccagcaa tacctaaaat ttcaccttgg
    22441 cgtagtacaa aattagcatt atcaacccgt ttgatatgtg tattggttgg gtgccaagcg
    22501 gttaaatttt caactcgaag gacttcttca ccaatattgt gtggctcgtg tgggtagagc
    22561 gaggtaatct cacgtccaac catcatcgta ataatatcgt cttcactcat tccctctgca
    22621 ctgcgagtac cgatatgttc gccgtctcga atgacacaga ttttgtcgga aatggctttc
    22681 acttcattca atttgtgtga aatataaaca caagcaatat tgtgagcttg taaatcttta
    22741 attaaactca gcagaatctc ggtttctttt tcggttaacg aggcggtagg ctcgtctaaa
    22801 atcaacaacc gtacctgttt attcaatgct ttggcaattt caaccaactg ttgttgccct
    22861 aaacctagct ctccaacttt ggtgtttggg tcaatatcca actgcacttg ttcaagtaag
    22921 gttttacaac gcagatacat ttcattgtca tctgtaatcc ctgatttggt aatttcattc
    22981 cctaaaaaca tattctccaa aatcgacata ttttttacta aggtcaattc ttggtgaata
    23041 atcgaaatgc ctttttcttc agtatctttg atatttctgg caatcaattt ttcgccggaa
    23101 aaatagattt ccccttcata atcaccggca ggataaattc cacataatac tttcatcaga
    23161 gttgatttgc ctgaaccatt ttcaccacat aaagaaagta tttcgccggt ttcaagggaa
    23221 attgaaatat tatttaatgc cacaacctca ccgaattttt tagtgatgtt cttcatttct
    23281 aataatttcg ccatacttag ttagcccctt attttcaaaa atggcgagga agcctcgcca
    23341 tctagaaaaa ttaaagtgat ttatttatat actgcatctt tggtatggaa gccgtcttta
    23401 attactgtgt catcaatatt ttctttagtt acaacaaccg gctctaataa atatgccggt
    23461 acttctttca taccgttatt taattgagca ttcatttcta ctttctcatc tttacctaat
    23521 gcaacagcaa tttcggcagc tttgtcggct aaattggtaa ttggtttata cactgtcatc
    23581 gtttgcgtac cggcaataat acgtttaatt gcggctaaat ctgcatcttg tccggaaatt
    23641 gcaaccttgc tggataaccc ttgggcactt aacgcttgaa ttgcaccgcc tgcggttgca
    23701 tcgtttgaag ctacaactgc atcaatatta tttttattag cagttagtgc attttccata
    23761 atctgtaatg ctttttcagc aagccaagaa tctacccatt gatcgcctac cactttaatt
    23821 tttccactgt caattaacgg ttgtagcacc ttcatttgac ctttacggaa cagcttcgcg
    23881 ttattatcta caggtgaacc acccattagg aaataattcc cctccggctt ttgcccaata
    23941 atgcttttag cctgcaattc acctactttt tcattatcaa atgaaacata aaaatccaca
    24001 tcggcattat tgattaagcg gtcgtaagca agtaccttaa caccttcttt cttcgcctcg
    24061 gcaatcacat tggataacac ttcgccgtta aacggaataa tcaccaatac atcaatatct
    24121 ttattcaaca tattctcaat ttgtgagatt tgtgcggttg catcgccatt tgccgattga
    24181 acgaagactt ttgctcctaa gctttccgct ttattcacaa aaatatctcg gtctttttgc
    24241 caacgctcta agcgtaaatc atcaattgac ataccgattt ttagatcttt agcaacagaa
    24301 gcattgctga gtaccattaa agtcgccgta gcaatggcta ataatttaga cttaagtttc
    24361 atagttcacc tcattggtta tgaaaatgtg agcatctttt tcgcccgtaa gcagtctggg
    24421 cttatttcaa atgaagttca attatcatat ttattaatat cattatgatt tttcactttt
    24481 gtgatctacg ccacattaac caataatcga aatccaaaaa cgaaatatcg taattgaagg
    24541 ttttgcataa ttttccgatg atgttaccga aagattattt ttccaattca taggagcatt
    24601 attatgtcta actatttcga caaaatctca aaagtacaat atgaaggggc taattccacc
    24661 aacccgtttg cattcaaaca ttacaacccg gatgaagtgg ttttaggcaa aacgatggca
    24721 gaacatctgc ggttagcggt ttgctattgg cacaccttct gctggacggg taacgatatg
    24781 tttggcgtgg gttcgcttga cagaagctgg caaaaaacgg gggatttact gcaaggtgcg
    24841 aagcaaaaag cggaaattgc ctttgaattt ttccaaaaat taggcattcc ttactactgc
    24901 ttccacgatg tggatgttgc accggaaggc aacaatttca aagaatatca gcacaatttc
    24961 aacactattg tggatatttt agagcaaaaa caagctgaaa caggcgtgaa attattatgg
    25021 ggtacggcga actgctttac caatcctcgc tatatgtcgg gtgcttcaac caatccgaat
    25081 ccggaagtct ttgcttgggc ggcagcacaa gtctttaccg caatgaacgc aaccaaacgc
    25141 ttaggcggcg aaaattatgt attatggggc ggacgtgaag gttatgaaac cctactcaac
    25201 actgacttaa aacgtgagcg tgaacaaatc ggtcgcttta tgcagttagt ggtggaacat
    25261 aaacacaaaa tcggttttaa cggcacttta ttaattgagc caaaaccaca agaaccaacc
    25321 aaacatcaat atgactacga tgttgccacc gtttacggtt tcttaaaaca gtttggtcta
    25381 gaaaaagaga tcaaagtcaa cattgaagca aaccacgcca ctcttgcagg gcatactttc
    25441 caacacgaaa ttgcgactgc caccgcatta gatatttttg gctcgattga tgccaaccga
    25501 ggtgatccgc aattaggttg ggataccgac caattcccaa acagcgtgga agaaaacacc
    25561 cttgtgatgt atgaaatctt aaaagcaggt ggtttcacaa cgggcggttt caactttgat
    25621 gcgaaaatcc gccgccaaag taccgatccg tatgatttat tccacgcaca tatcggggca
    25681 attgatgtgt tagccctttc gctaaaacgt gcggcaaaaa tgctggaaga tcaagcatta
    25741 cagaaagtag tagataaccg ctacgctggc tggaaccaag atttgggctt acaaattcta
    25801 aacggtaaag caagccttga agatttggca aaaatagtgg aaacccaagg gttagatcca
    25861 aaacctgttt ccggtcagca agaatatttg gaaaatttgg taaatagcta tatttaccgt
    25921 taatctacaa gcggttgttt tttatcaatt ttttgcaaag ttaagctcga tctgatcccc
    25981 ctctttgcta aagaggggtg atagatctcc aaaacttaaa attgcaaatg ttccgaataa
    26041 aatgaccgct tgtattcaat aacaaaggaa tatttatgta cattggaatc gatctcggca
    26101 catcgggtgt gaaagtcgtg ttactcgatg aaaatcaaca cattattgcc atcacacaaa
    26161 aatcacttcc tatttttcgt ccacacccat tgtggtctga acaaaatccg caagattggt
    26221 ggaatgccac caatgaagcg atgttagaac tttccgctac tcaagattta caagcagtaa
    26281 aagcgattgg tttaaccggg caaatgcacg gagcgacttt actagataac gcagataatg
    26341 tactttcccc tgcgatttta tggaatgacg gacgtagttt tatggaatgc gaagagttag
    26401 aacagcttgt gccaaatagc cgtgaaatta caggcaacct gatgatgccg ggctttaccg
    26461 ctccgaaatt gcgttgggtt gataaacacc agcccgatat tgccgaaaaa gtcagcaaag
    26521 tcttgctacc gaaagattat ctccgcttgt tgatgagcgg cgaatatgcc tctgatatgt
    26581 ctgatgcctc cggcacaatg tggcttgatg tgggtaaacg gaattggaac aaatcgctac
    26641 taaatgcttg cggattagac attgaaaata tgccgaaact gtttgaaggc aatcaaatca
    26701 caggttattt acgtccaacc cttgccgagc aatggaaaat gaaatctgtg ccgattgtgg
    26761 caggcggtgg cgataatgct gccggtgcaa tcggcattgg cttataccaa accgggcaag
    26821 ctatgctctc attggggact tcaggggttt attttgtagt gagcgataaa tttcaggcta
    26881 atccgcaaaa agcagtgcat agtttttgcc acgctttacc tgatcgttgg catctgatgt
    26941 cagtaatatt aagtgccgct tctgcggtag attgggcagt aaaatcattg ggactaaaag
    27001 atgtatcgac tttattccaa caggttgaag caagccaaac ggcatctgat gctattttct
    27061 taccttattt atcgggtgaa cgtacaccgc ataatgaccc ttatgcgaaa ggcgtatttt
    27121 ggggattaag ccataatgac aaccaaataa cgatggcaaa agccgtgatt gaaggggtaa
    27181 gtttcgcttt ggctgaaggg attgaggtac tccacgaaac tggtgtagtt gctgacaata
    27241 ttgcattaat tggcggtgga gcaaaaagtg tgtactggcg acaactactt gccgatatta
    27301 gcggtaaaac ctttgaatac cgcaccagtg gtgatgtcgg tccggcatta ggggcggcaa
    27361 aactcgctca aattgcgcta aacccaaatc aggatattgc tacgttctgt cagccgttac
    27421 ccctggaaca ggtttaccaa ccaacccctg cccgctatgc agaatatcaa caaaaacgcc
    27481 aaaaatttac tgagctttac cggcggttaa aggggttata attcttgcca actattacaa
    27541 gcggttgatt ttgcagattt ttttgtaaaa tcaaccgctt gtatcacact ttagaaaaca
    27601 aattaatcac caatacaccg gcaataatga ggctgatgcc gattaagcct gccaagtcaa
    27661 ttttctgtcc gaaagcaaaa taagcaacaa gggcggtaag gacaatccct acgccggacc
    27721 aaatagcata cacgattccg accggtaggg tgcggaaaat aatagagaga aagtaaaagg
    27781 ataaaccgta taaggcgagc gagccaatag tcggtatagc tttggtgaag ccgttgctta
    27841 atttgagtaa attggtggca gcgatttcga ggcagatgga aatcgcaagt aaaatccaaa
    27901 cgttcattga tgacctcttt gcgtaaatgc gtgctatttt acctgagttg caaaaaaatt
    27961 taaaaaaatc accgcttgtt ttttcctgat taagctatgg tacaatcttt ggtgaatcag
    28021 gaggtgtgaa atggcacagg tttatatcgt acacggttat acggcgaatg ccgataagca
    28081 ttggtttcct tggctggagc aagaattagc gaagtgtggt gtcagttgtg agcggttgaa
    28141 tatgccggat tcggcaaagc cgtcattaga tggttggtta aatcatcttg cacaaaatgt
    28201 ggagctgacc gatcaaacgg tttttgtcgg gcatagttta ggttgcattg ccattttgaa
    28261 ttttttagcc aaaaattacg ccaagattaa aggggcggtg tttgtgtcgg ggttctatca
    28321 accggtagaa aacttacccg aactgtctgc ctttaccaac tattatgcga ttttgccgag
    28381 cgtatcgagc tttccaagct atgtggtaag tgcgttagat gataaggtcg tgaatcacca
    28441 atacagtgat gcgttagccc aacatttgca cgcggattat attcggttaa atcaaggcgg
    28501 gcattttttg gatagagaag gtgttaccga attacctgtg gtgttggagt tggtgaagaa
    28561 gttactcgag tgaaacctgt tttggtacaa gcgaggacgc ttgcaccatc tataagttga
    28621 atttaaacaa aagttataca tcagtctgat agtgccagcg tccacgctgg tacttttgta
    28681 taaaccaacc ctattttgca aaaaaacggt aaaaataaac cgcttgcctc cctatgggaa
    28741 aacttacagt ttaataaatc catcataaat gtgggtggca tcgccggtca tatacagagg
    28801 atgccctact ccttgccatt caataatcag cgttccaccg ggtaaatcca cctgcacttt
    28861 gttatctaac aagccttgca taatgccgac cgccactgtg ccgcacgcac cgctaccaca
    28921 ggcttgggtt tcgcctgctc cacgctcata cacccgtaat ttaacgtgat tgcgattcac
    28981 tacttgcata aagctgatat tcgcccgttc aggaaaacgc tcgtggcttt ctagtaacgg
    29041 cccgagttca tttaccgggg cggttttcac atcatcaact tgcagtacgc agtgcggatt
    29101 ccccattgaa accacgccac ataacacggt ttgtagctcg gtgcgtaaaa tatagttttt
    29161 ctcaaattta tttgctgtaa aaggcacttg cgaaggttcc caaatcggtt cgcccatatt
    29221 cacacgcact ttgccgtctt cttgcaaact tagcaccatt ttgccttttg cggtgctaac
    29281 gtgaatgtct tttttgttgg ttaagccttt gagcgtaaca aaacgggcaa aacatctcgc
    29341 cccattgcca cattgcgaca cttcactgcc gtctgcatta aaaatgcgat agtgaaaatc
    29401 taattcaggg tcgtaaggcg gttcaaccaa taaaagttgg tcgaaaccga taccacgatg
    29461 gcgatcagaa agcgtacgga tcatctcttc ggtaaggtaa acgttttggg ttacaccatc
    29521 aaccaccata aaatcattgc ctaagccgtg catt
//
LOCUS       DANMBQ010000015        28220 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.015, whole genome shotgun sequence.
ACCESSION   DANMBQ010000015 DANMBQ010000000
VERSION     DANMBQ010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28220)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28220)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28220
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.015"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            2..247
                     /locus_tag="PXE92_000620"
     CDS             2..247
                     /locus_tag="PXE92_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1049 domain-containing protein"
                     /protein_id="HDL5759898.1"
                     /translation="MIVAVTIGANNDQLITFNYIFAQSELRLSTLVAILFGLGLILGW
                     LVTGIFYLKIKFQNVALNRRVKRQAQQITELTTPKAE"
     gene            251..1447
                     /gene="lapB"
                     /locus_tag="PXE92_000621"
     CDS             251..1447
                     /gene="lapB"
                     /locus_tag="PXE92_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HDL5759899.1"
                     /translation="MLELLFLLLPIAALYGWYMGQRSAKKDQETASNKFSREYVTGLN
                     FLLSNQQEKAVDLFLSMLQKQESENHIASESQFEAELTLGNLFRSRGEVDRALRIHQT
                     LVNSPHYSFDQKLLAKQQLAKDFMVAGFYDRAENYYISLVDEPEFAKYSLSQLAVIYQ
                     KTREWKKAINVTEKRLRIEPDADKIPLSHFYCEYAQGVKFDDKAAFIESLNKALEYYP
                     QSTRASIILGDFYLEEGEYLRALSYFEQILVQDPDYISEVLGRIKQSYMALEDLNGYE
                     LFLIRANRVKHNSSVDIALTEFIEEKDGINAAHSKLYQQLSTYPNLITFHRFIRYQAD
                     FAEEGNGKESLVLLHNMVGNQIKRSFQYRCLNCGYQSYRLMWQCPSCNQWEKIKPVQS
                     IEGIIQ"
     gene            1471..2163
                     /gene="pyrF"
                     /locus_tag="PXE92_000622"
     CDS             1471..2163
                     /gene="pyrF"
                     /locus_tag="PXE92_000622"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDL5759900.1"
                     /translation="MNNKVIVALDYETEREALEFVDLVDPSLCRLKVGKEMFTTLGTN
                     FVKQLHERKFDVFLDLKYHDIPNTVARAVRSAADLGVWMVDLHASGGLAMMEEAKKIL
                     EPYGKEAPLLIAVTVLTSMEDLDLLQIGINASPMEQVIRLAHLAQRAGLDGVVCSPQE
                     VEVLRTHCGQDFKLVTPGIRPKGTDFGDQRRVMTPKQAVETGSDFLVIGRPITQAQDP
                     LAVLKSINQSIS"
     gene            2246..2557
                     /gene="yciH"
                     /locus_tag="PXE92_000623"
     CDS             2246..2557
                     /gene="yciH"
                     /locus_tag="PXE92_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HDL5759901.1"
                     /translation="MTLVYSTETGRIKSEVIKEERPKGDGIVRIQRQTSGRKGKGVCL
                     ITGLDLEDKALNSLASELKRKLGCGGSFKDGVIEIQGDNRGFIKQILEQKGFKVKLAG
                     G"
     gene            2660..4822
                     /locus_tag="PXE92_000624"
     CDS             2660..4822
                     /locus_tag="PXE92_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDL5759902.1"
                     /translation="MWKKTLIAVFLASQYAFAVGTGKEPSKSYTETELKQLKNDWLAI
                     YQKELQYAENLRLKQRENFQQINYLADAAISQKNLSLSTEQIIQRLLLTLAGYPLEMK
                     AEWKLLNAKITLKQATESEVKAFISKYPDSLYQRQLQNLMFELLYREQKFPELLEYAQ
                     NVKQSSLADQCRLFSARYELAASKAQINPEVSQVTEQKAENAELLALVQEFDRFWLAT
                     PKLTSDCANLESYWRDQGLKTDEKMRLKAVELIKQNANAELANLAANVNNENLKIWLS
                     SVEKVANNPADLQNFIENQPLDSPFYADNKAIIQQLFAKYVRTLSENMENPSFQQYQT
                     WAEKYQLSSEEINGWKNAFITRFFDNPEPTFQFWRDEQIKLLKTDNLTERRLRMAIWQ
                     KADLNEWLVLLSQQAKEKAEWRYWAAKEEKNEAKRKVDFESLAKERGFYAMLAAQQLG
                     IVYQIPMLEVPELTQAQLELYANQLARIQELRELGQFDQARKIWIDWIKNIKPEAGEN
                     TPTKIQLALIKYAKDKNWYDLAVEGTIQTKAFDYLDLRLPNAYSDWFDLHLQDKKISK
                     TFAQAIARQESAWNAQAQSHANARGLMQLLPTTAQKTAKDNGLTFKDGNDLFQPFNNI
                     MLGTTHLMELNEKYPNNRILIASAYNAGAGRVEQWLKRSNGQLAMDEFIASIPFYETR
                     GYVQNVLAYDYYYQMLYSDINDKNGLKMFYQEELTRKY"
     gene            4871..4947
                     /locus_tag="PXE92_000625"
     tRNA            4871..4947
                     /locus_tag="PXE92_000625"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4905..4907,aa:Met,seq:cat)
     gene            5174..5635
                     /gene="rimP"
                     /locus_tag="PXE92_000626"
     CDS             5174..5635
                     /gene="rimP"
                     /locus_tag="PXE92_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDL5759903.1"
                     /translation="MATLEQKLEDLVLDSIEALGFELVGIECQRAGRFLTVRLYIDKE
                     GGVTIDDCSDVSRQVSAIFDVEDPIADKYNLEVSSPGLDRPLFTVAHYERFIGQDVVI
                     HLRIPMFDRRKWQGKIKQVEGDFITLTVENEDRQFAFGNIQKANLVPVFNF"
     gene            5656..7152
                     /gene="nusA"
                     /locus_tag="PXE92_000627"
     CDS             5656..7152
                     /gene="nusA"
                     /locus_tag="PXE92_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDL5759904.1"
                     /translation="MSKEILLAAEAVSNEKQLPKEAIFEALETALTIATKKSRDLDID
                     VRVVVDRKTGDFQTFRRWAVVENVNNMTREISLEAAQFEDPNVQLGDFIEDEVESIEF
                     GRVAIQTFGQVVKTKIREAEKTKIIDEFRSDLGKIILATVKKVTRDNIFLELQGKSED
                     IKGEAVIVREDMIPRENFRPGDRVRGVLYEIKPESKGPQLFVTRAKPVMLEELFKLEV
                     PEIGEGVIEIKGSARDVGSRAKIAVKTHDKRIDPVGACVGMRGARVQAISNELGGERV
                     DIVLWDENPAQFVINAMAPADVSSIVINDETHSMDIAVEAKNLAQAIGRNGQNVRLAT
                     QLTGWALNVMTVEELTKKSEEEDGKVINLLTSALEIDEEFAQVLIEEGFTSLEAIAYV
                     PVDTLTAIDGLEDEDLVEELQSRAKNAITKKALEEEKLLKSAQIEEKLLTLEGMDRHI
                     AFKLAEKQITTLEELAEQGVDDLADIEELSEEKAGELIMAARQICWFN"
     gene            7137..9704
                     /gene="infB"
                     /locus_tag="PXE92_000628"
     CDS             7137..9704
                     /gene="infB"
                     /locus_tag="PXE92_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDL5759905.1"
                     /translation="MLVQLSKEDNKMTEEKKTLSLGGARKASKVNTTTTSGKVKAVEV
                     KEKKPKIDAKALQEKAAKEAAAAKARAEKEAAEKLAKEKAEAEAKEKAAKKAAESTAS
                     KPISVPVMPSSKAKEEKPKAQQVQPKQEKAVDPEKEAKRKEEAELRRKQEELAQQKAE
                     MEAKRAAENARRLAEIAREEAEDNGNEDFDDERFTSSYAREAERDNDRRSEGNRGRNG
                     KGNVAKAKKGGREEDKNERSADRRNHKEVKGKGKQGKKGAALQQAFTKPAQVVKADVV
                     IGETITVAELANKMAVKATEIIKMMMKMGEMVTINQVIDQETAQLVAEELGHKVILRK
                     ENELEEAVLEDRDTHAEKVTRAPVVTIMGHVDHGKTSLLDYIRKAKVAAGEAGGITQH
                     IGAYHVETDDGKMITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTIEAIQ
                     HAKAAGAPLVVAVNKIDKPEANPDRVEQELLQHEVISEKFGGDVQFVPVSAKKGMGID
                     DLLEAIILQSEVLELTAVKDGMASGVVIESYLDKGRGPVATILVQSGTLNKGDIVLCG
                     FEYGRVRAMRDENGKDVESAGPSIPVEVLGLSGVPAAGDEATVVRDEKKAREVALYRQ
                     GKFREVKLARQQKAKLENMFSNMAAGDVAELNIIVKADVQGSVEAISQSLMELSTDEV
                     KVKIVGSGVGGITETDATLAAASNAIMVGFNVRADASARRVIENENIDLRYYSIIYEL
                     LNDVKAAMSGMLQPEFKQEIIGLAEVRDVFRHPKFGAIAGCMVTEGIVKRNNPIRVLR
                     DNVVIFEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVKVGDQIEVFEVVEVKRTI"
     gene            9789..10169
                     /gene="rbfA"
                     /locus_tag="PXE92_000629"
     CDS             9789..10169
                     /gene="rbfA"
                     /locus_tag="PXE92_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDL5759906.1"
                     /translation="MSREFKRSDRVAQELQKEVAVILQREVKDPRIGMVTVSDVEVSR
                     DLAYAKIFVTFLFDNDAEAIKQGMQGLEKASPYIRTLLGKAMRLRIVPELRFIYDESL
                     VEGMRMSNLVSSVIKNDEEKHKED"
     gene            10172..11095
                     /gene="truB"
                     /locus_tag="PXE92_000630"
     CDS             10172..11095
                     /gene="truB"
                     /locus_tag="PXE92_000630"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDL5759907.1"
                     /translation="MSRPRKRGRDIHGVFLLDKPQGMSSNDILQKVKRIFQANKAGHT
                     GALDPLATGMLPICLGEATKFSQFLLDSDKRYLVTAKLGERTDTSDAEGQVVETKAVA
                     VTKSQILAALEKFRGDILQVPTMFSALKHNGKPLYEYARAGITVEREARPITIFELNF
                     IEYKAPFLTLEVHCSKGTYIRTLVDDLGEELGCGAHVTMLRRTAVADYPIEKMMSYAD
                     LQNLAENQPLAELDQHLLPMDTAVSALAKINLSSEQTKAVGFGQRIRFDNLNQLYGLV
                     RLYSEDEQFLGVAEITNDTVIRPNRMINLTE"
     gene            11098..12178
                     /locus_tag="PXE92_000631"
                     /pseudo
     CDS             11098..12178
                     /locus_tag="PXE92_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252783.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
     gene            complement(12216..12740)
                     /gene="tadA"
                     /locus_tag="PXE92_000632"
     CDS             complement(12216..12740)
                     /gene="tadA"
                     /locus_tag="PXE92_000632"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HDL5759908.1"
                     /translation="MFIKPNQTSCPLQISEQDIAFMQYALDLADLAEAKGEIPVGAVL
                     VDKNQQIIGRGWNQTIQLCDPSAHAEMQAIRQAGQTLGNYRLLDCTLYVTLEPCPMCA
                     GAILHSRIKRLVFGASDYKTGAVGSRYHLFEDYKMNHFLEVHGNVLGRECSQKISDFF
                     KQRRLQKKGDALIK"
     gene            complement(12822..14630)
                     /locus_tag="PXE92_000633"
     CDS             complement(12822..14630)
                     /locus_tag="PXE92_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDL5759909.1"
                     /translation="MTTESLTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGR
                     DVLGMAQTGSGKTAAFSLPLLAQIDPTQRHPQMLVMAPTRELAIQVADACEQFAKNMK
                     GIRVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADE
                     MLRMGFIDDVETVMAELPETHQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAP
                     DIEQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALN
                     GDMTQQAREQTLDKLRSGRLDILVATDVAARGIDIERISLVINYDIPLEEESYVHRIG
                     RTGRAGRSGRALLFVEPRERRLLRNIENLIKKPINEVAIPNHEILMEKRREKFKARIS
                     KQLEHHDLEKYRELLEDLFTADQDHEELAAAMMMLLQEKQKLILPPDPVVRAARSERG
                     RDRNERNDRRNGREHRENNGVAMDLYRIELGREDGVEVRHIVGAIANEGDISSRYIGH
                     IKLYDKYSTIELPQGMPNHLVQHFAHKARVLSKPMQMTLLGSANSASNANPFEGRGRR
                     GNDRNDRGGRRDGGFNKDRKGGFKEKRFSEKRGRRD"
     gene            complement(14832..15755)
                     /gene="nlpI"
                     /locus_tag="PXE92_000634"
     CDS             complement(14832..15755)
                     /gene="nlpI"
                     /locus_tag="PXE92_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HDL5759910.1"
                     /translation="MVQLFKLFRIRFLLLNLISVLMLSGCTSRYADLVSIKNLALAEL
                     NPQLRFEQEAMVVRLSQVLEEAPLTPSEQADLYFERGVIYDSLGLWSLARYDFAQAIS
                     LNQRMAAAYNYMGLYLLLEGDYDSSIDAFNAVLELDREYSYTYLNRGLAFYYSGRYSE
                     AQRDLLHFYEEDKKDPYRALWLYFNELEFTPTEAKNNLQKRANNLSSDYWGTNIVNYF
                     LGKLNLAQVRAIMERDAKENSSQYAEILTETYFYLAKQQLKLDHKDEAISLFRLALAN
                     QVFNFVEYRFALFELSQIRGMTQTTPVVDKE"
     gene            complement(15836..17986)
                     /gene="pnp"
                     /locus_tag="PXE92_000635"
     CDS             complement(15836..17986)
                     /gene="pnp"
                     /locus_tag="PXE92_000635"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDL5759911.1"
                     /translation="MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVV
                     AKKDVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLF
                     PEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQF
                     VLNPTTSEQKISRLDLVVSGTDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENI
                     KEFVKEAGKPRWDWVAPEPNTDLINKVKALAETRLGDAYRIVEKQVRYEQIDAIKAEV
                     IAQLTAEDETVSEGTIIDIITALESQIVRSRIIAGEPRIDGRTVDTVRALDICTSVLP
                     RTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLFHYNFPPYSVGETGRI
                     GSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLALM
                     DAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDI
                     KIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRADISDYAPRIHTMKIDPKKIKD
                     VIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGNAAKAVMARIEEIVAEVEVNQIY
                     NGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLTVGQEVQVKVVEIDRQG
                     RIRLTMKDINNTNEANAEETVAENVVETEQENNF"
     gene            complement(18248..19528)
                     /gene="phoR"
                     /locus_tag="PXE92_000636"
     CDS             complement(18248..19528)
                     /gene="phoR"
                     /locus_tag="PXE92_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HDL5759912.1"
                     /translation="MKVKLSLKHFLLELLLAAAVAGVFNLFFPAYFFWFSFCLLVLLI
                     WHHHTESSLLQLLRPNEQSGRSKVTTMEHLSQSAAFYHERLRQDKIKTLRLLSKLNKH
                     IQYLPDAIIICQENGEISWCNNVAQELFEFYWDKKSNKSIFNVIFYPEFKSYFRQQRH
                     HRPLVLLTHNKRYIELNLNRYDSNSRLIVARDVTSFVRLMHSRQTFLANMNHELRTPL
                     TILQGYLEMLENEPHNMALQQKALNAMKEQSQRMTNLLRQLSLLVKIEHSNDSEHNEV
                     QMSALISAIQKNTEILSQNQQILFDIEPNLTVWGDQEQLQSAVSNLIYNAIRHAGEGV
                     TIQICCQRDNQEPNTAIFSVQDDGIGIDAHHITHLTERFYRVDESRSNKTGGSGLGLA
                     IVKHALEQHHSTLEIESEAGKGSRFSFKLPLIKK"
     gene            complement(19531..20217)
                     /gene="phoB"
                     /locus_tag="PXE92_000637"
     CDS             complement(19531..20217)
                     /gene="phoB"
                     /locus_tag="PXE92_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006996031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HDL5759913.1"
                     /translation="MNNKILIVEDERAIREMLSLYLSKQYQVIEAEDYQSAINKLGEK
                     PELILLDWMMPGRSGIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYIT
                     KPFSPQVLLARIEAVWRRSYDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLL
                     HFLMTHPEKVYRREQLLDFIWGNDIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGS
                     GYRFSNHFQD"
     gene            complement(20301..21071)
                     /gene="pstB"
                     /locus_tag="PXE92_000638"
     CDS             complement(20301..21071)
                     /gene="pstB"
                     /locus_tag="PXE92_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HDL5759914.1"
                     /translation="MLPTDLETKLHINNLNFYYGDFHALKNINMRIAKNKVTAFIGPS
                     GCGKSTLLRTLNRMFELYPNQRATGEINLDGENLLTSDTDISIIRAKVGMVFQKPTPF
                     PMSIYDNVAFGIRLFEKLPKSELNDRVEWALTKAALWNEVKHKLNQNGDSLSGGQQQR
                     LCIARGIAVKPEVLLLDEPCSALDPISTMKIEELINELKHDYTVAIVTHNMQQAARCS
                     DYTAYMYLGELIEFGDTKQIFDKPKFRQTEDYIKGKMG"
     gene            complement(21081..21929)
                     /gene="pstA"
                     /locus_tag="PXE92_000639"
     CDS             complement(21081..21929)
                     /gene="pstA"
                     /locus_tag="PXE92_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005650601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDL5759915.1"
                     /translation="MKNYQNRRFYCRKIKNVLMLSLAYSAVLFGLFWLVWIIVTLLQK
                     GIPALSWELFTRPTPAPNETGGLRNAIVGSILIVSTATLIATPIGILAGTYLSEYGRY
                     TKLAKFTRFLNDVLLSAPSIIIGLFIYAIYVAQVKHYSGWAGSLALAVLVIPIVVRTT
                     DSMLNLVPNNLREAAAALGCPRWRVITMISYRAARSGIITGVLLAVARISGETAPLLF
                     TALSNQFASLDMNAPMANLPVVIYQYAASPFADWNTLAWAGAMLITLFVLSLNIITRL
                     YFSKTK"
     gene            complement(21926..22885)
                     /gene="pstC"
                     /locus_tag="PXE92_000640"
     CDS             complement(21926..22885)
                     /gene="pstC"
                     /locus_tag="PXE92_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDL5759916.1"
                     /translation="MHKHKIDNKCLNHPWVEGLFHHTTRFFALLVFALLVVVLVSLLL
                     GSWEALSRFGVSFLWENEWNPVNDRYGALVPIIGTLISAGIALVIAVPVSFGIATFLT
                     ELAPQWLKRPVGTAVEMLAAIPSIIYGMWGLFVFVPLFQEYVQPYLIDTFGQLPFIGM
                     LFSGAPFGIGLFSAGLVLAIMIIPFIASIMRDVFSVVPPLLKESAYGLGSTTWEVIWK
                     VVLPYTKTGVIGAIMLGLGRALGETMAVTFVIGNAFMLPDSVFSPSTSIASAIANEFN
                     EAGGLQKSALMSLGLILFLITSIVLAASRLLIARMGKQEGKRE"
     gene            complement(22966..24003)
                     /gene="pstS"
                     /locus_tag="PXE92_000641"
     CDS             complement(22966..24003)
                     /gene="pstS"
                     /locus_tag="PXE92_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005756281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HDL5759917.1"
                     /translation="MAKRFKLLTVLGISFSLSVAANAQTITGAGASFPYPIYAKWAGL
                     YEKETGNKINYQSIGSGGGQQQIIAKTIDFGASDDPMKGETLAEHKLLQFPAIIGGTV
                     PVVNIPELKSGELKLSGKVLADIFLGKITQWNDPAIVALNQDIALPAKTILVVRRSDG
                     SGTTFGWTNYLSKVSAEWKEKVGEGKSVKWPVGQGGKGNEGVAAYVKQLKYSIGYVEY
                     AYAKQNALAWVSMQNADGKFVQPSRETFAAAAANADWSQTAGMGVILTNEAGEKAWPI
                     TAASFILIHQHSDKPEQTKGVFKFFDWAFKHGKDAAAELDYVPLPDNVVEKIQTQWKT
                     EVKDGQGNSLY"
     gene            24188..26434
                     /gene="parC"
                     /locus_tag="PXE92_000642"
     CDS             24188..26434
                     /gene="parC"
                     /locus_tag="PXE92_000642"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HDL5759918.1"
                     /translation="MTTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLK
                     PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYKAMVLMAQPFSYRY
                     PLVDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPK
                     YLPARLPHILLNGTMGIAVGMATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGP
                     DYPTEAEIITPKAEIARMYEQGRGSIKMRAVWKKEEGEIVISALPHQASPSKIIEQVA
                     TQMRNKKLPMVDDIRDESDHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNM
                     NMIGLDGKPAVKNLLTILNEWLSFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNID
                     EVIEIIRNEDEPKAELMARFNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKERD
                     ELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPTEDVTVI
                     LSEKGWVRCAKGHDIDVQALSHRAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLP
                     SARSQGEPLTGKITLPEGAVVQQVLMASPETKVLMASDSGYGFICTFADLVSRNKAGK
                     AVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPQLSKGKGNKIINISA
                     AAAKSGDEYLARLLVIKPTNSLVFVSGKRKITLKPSDVDNYRGERARKGSQLVRGLST
                     NSTVEIVE"
     gene            complement(26505..27857)
                     /gene="lysC"
                     /locus_tag="PXE92_000643"
     CDS             complement(26505..27857)
                     /gene="lysC"
                     /locus_tag="PXE92_000643"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HDL5759919.1"
                     /translation="MSHLSVAKFGGTSVANFDAMTSSANIVIADANTRVVVLSASAGV
                     TNYLVELANGCEKEHRDEVIAAVRQIQYNIIEKLQHQDAVKAEIDELLERIETLAESA
                     SLATSAALSDELISHGEMMSTKIFTQLLIERGHPAVWVDVRDVVATNSHYGKAAPNDE
                     KTQQQSDNVIKPLIASGKIVITQGFIGRDDEGKTTTLGRGGSDYSAALLAEVLNANDV
                     LIWTDVPGIYTTDPRVVPNAQRIDTMAFNEAAEMATFGAKVLHPATLLPAVRSNIPVY
                     VGSSKAPEQGGTWVTRDPQPRPTFRAIALRRNQILLTLSSLSMLHAQGFLANVFAILA
                     KHKISVDVITTSEVSVALTLDKTGSASSGADMLSAELLDELNAYCNVQVESDLALVAI
                     IGNNLHAQSGVAKKLFHTLENYNIRLISYGASSNNVCTLVKNAEADDVVRSLHKGLFE
                     "
BASE COUNT         8438 a         5549 c         6290 g         7943 t
ORIGIN      
        1 tattattgtc gctgttacga ttggagccaa taatgatcaa cttatcacct ttaactatat
       61 ttttgctcag agtgaattac gcttatcaac gttagttgcg attttatttg gcttaggatt
      121 gattcttggt tggttggtaa cgggtatttt ttacttaaaa attaagtttc aaaacgttgc
      181 tttaaatcgt cgtgtaaagc gccaagctca gcaaataact gaattaacga ctccaaaggc
      241 tgaataatca atgcttgaat tattgttcct tttattgcct attgcagcac tatatggctg
      301 gtatatggga caacgtagtg caaagaagga tcaagaaacc gctagtaata agttctctcg
      361 tgagtatgtt acggggttaa attttctttt atctaatcag caggaaaagg cggtggacct
      421 tttcctctct atgttacaaa aacaagaatc cgaaaatcat attgcatctg aatcccaatt
      481 tgaagcggag ttaaccctag gtaatctttt ccgttcaaga ggtgaggtag atcgtgcctt
      541 acgtattcac caaacattag tgaatagccc tcattattca tttgatcaaa aattattagc
      601 aaaacagcaa ttagctaaag actttatggt tgcaggtttc tatgaccgtg cagaaaatta
      661 ttacatttca ttagttgatg aacctgagtt tgctaaatat tctttatctc agcttgctgt
      721 tatttaccaa aaaaccagag aatggaaaaa agcgattaat gttacagaaa aacggcttcg
      781 aatagagccg gatgcagata aaataccgct ttcacatttt tattgtgaat atgcgcaagg
      841 ggttaaattt gatgataaag cggcatttat tgaatcgtta aataaagcgt tagaatatta
      901 tcctcaatcc acacgcgctt ctataatatt aggtgatttc tatttagaag agggagaata
      961 tctaagagca ttaagctatt tcgaacagat tcttgtgcaa gaccctgatt atattagcga
     1021 agtgcttgga cgaattaagc aaagctatat ggctcttgag gacttaaatg gctatgagtt
     1081 atttctcatt cgagcaaacc gagtaaaaca taatagtagt gtagatattg ctttaactga
     1141 atttattgaa gaaaaagatg gtatcaatgc tgcacattct aaactatacc agcagttgag
     1201 tacttatccg aatttaatta cttttcaccg ctttattcgc tatcaagcag attttgcgga
     1261 ggaaggaaat ggtaaggaaa gcttagtttt attacataat atggtgggaa atcagataaa
     1321 acgcagcttc caatatcgct gtttaaattg tggttatcaa agttatcgct taatgtggca
     1381 atgtccttct tgtaatcaat gggaaaaaat taagccggta caaagtatcg aaggtattat
     1441 tcaataaaga aagaatctga ggaattgaaa atgaacaata aagtaattgt tgcgttagac
     1501 tatgaaactg aacgtgaagc attagaattt gtggatttgg tcgatccgtc gctttgtcgt
     1561 ttaaaagtag gcaaagaaat gtttacaacc ttaggcacaa attttgtcaa acaattacac
     1621 gaacgtaaat ttgatgtatt ccttgattta aaatatcatg atattccaaa tacggttgct
     1681 cgagcagtac gttctgctgc tgatcttggt gtgtggatgg ttgacttgca tgcttctggt
     1741 ggtttagcca tgatggaaga ggcaaagaaa attttggagc cttatggcaa agaggcacca
     1801 ttattaattg cagtgacggt tctaaccagt atggaagatt tggatttgct tcaaataggt
     1861 attaatgctt cgccgatgga acaagttatt cgtttagcac atttagcaca acgggctggt
     1921 ttagatggcg tggtatgttc tccacaagaa gttgaggtat tacgtaccca ttgtggtcaa
     1981 gattttaaat tagtgacccc aggaatccgg ccaaaaggaa cagattttgg ggatcaacgc
     2041 cgagtgatga cacccaaaca agcagtagaa acaggctcag attttttggt tattggtcgt
     2101 cctattaccc aagctcaaga tccgcttgcg gtattaaaat ctattaacca atctatcagt
     2161 taattcattg catttttaat gaaggcggaa aaatttccgc cttttttaat caaacaagcg
     2221 gttatttttg aggaaaaatt tgtaaatgac attagtctat tcaacggaaa caggcagaat
     2281 aaagtccgaa gtaataaaag aagaacgccc taaaggggat ggtattgtgc gtattcaacg
     2341 tcaaacaagc ggtagaaagg ggaaaggtgt ttgccttatc accggtcttg atttagagga
     2401 taaagcctta aattctcttg cttcagagct taaacgtaaa ttgggttgtg gtggctcatt
     2461 taaagatgga gtaattgaaa tccagggcga taatcgagga ttcattaagc aaatcttaga
     2521 acagaaaggt ttcaaagtga aactggcagg tggttgagtt ttaaacaatt atcagctggc
     2581 agtttttaaa taacttcatt ttatttgaaa cttcattcct acttttctgc ctaaaactca
     2641 cgattaagga gaaaaactaa tgtggaagaa aacgttgatt gctgtatttt tagcaagcca
     2701 atatgctttt gcggtaggaa ccgggaaaga accatcaaaa agttatactg aaacagaatt
     2761 aaaacaatta aaaaatgatt ggttagcgat ttatcaaaaa gagctacagt atgcagaaaa
     2821 tttgcgttta aaacagagag aaaattttca gcaaattaat tatttggcag atgcagcgat
     2881 tagtcagaag aatttatcac tttcaacgga gcagataatt cagcgtttat tactaacctt
     2941 agcgggttat ccgttggaga tgaaagctga atggaagctg ctaaatgcta aaataacgtt
     3001 aaaacaagcc acagaaagtg aagttaaagc atttatttca aaatatcctg attctttgta
     3061 tcaaaggcag ttacagaact tgatgtttga gctgctctat cgtgaacaga aatttccgga
     3121 gttactggaa tatgctcaaa atgtaaaaca gagtagtctt gccgaccaat gccgtttatt
     3181 ttctgctcgt tatgaactgg cagcaagtaa agctcaaatc aatccggaag tttctcaagt
     3241 aactgagcaa aaagcagaaa atgcagaact gcttgctttg gtgcaagagt ttgatcgctt
     3301 ttggcttgct acgccgaaat taacttctga ttgtgcgaat ttagaaagtt attggcggga
     3361 tcaggggctt aaaaccgatg aaaaaatgcg tttgaaagcg gtcgaattaa ttaaacaaaa
     3421 tgcaaatgca gaattggcga atttggcggc aaatgtaaat aatgagaatt tgaaaatctg
     3481 gctatcttcc gttgaaaagg tagcgaataa tccggcagat ttgcaaaatt ttatcgaaaa
     3541 tcaaccgctt gattccccat tttatgctga taataaagcg attattcagc aactctttgc
     3601 taaatatgtg cgaactttat cggaaaatat ggagaacccg agtttccagc agtatcaaac
     3661 gtgggcagag aagtatcaac tttccagcga ggaaatcaat ggctggaaaa atgcttttat
     3721 cactcgattt tttgataacc cagaaccaac attccaattt tggcgtgatg agcaaatcaa
     3781 gttgctcaag acagacaatt taactgaacg ccgtttacga atggcaattt ggcaaaaagc
     3841 agatttaaat gagtggctgg ttctgctatc tcagcaggcg aaagaaaaag cagaatggcg
     3901 ttattgggct gcgaaagagg agaaaaacga agcgaagcgt aaagttgatt ttgaaagctt
     3961 agctaaagag agaggctttt atgctatgtt ggctgctcaa caattaggca ttgtttacca
     4021 aatcccgatg cttgaagtgc ctgaattgac acaagcacag cttgaattgt atgcaaacca
     4081 attagctcgt attcaagagt tgcgagagct agggcagttt gaccaggcaa gaaaaatatg
     4141 gattgactgg ataaaaaaca tcaagccgga agcaggtgaa aatacaccaa ctaaaatcca
     4201 gttagccctg ataaaatatg ccaaggataa aaattggtat gatttggcgg tggaaggtac
     4261 aattcaaaca aaagcctttg attatcttga tttgcgatta ccgaatgcct attcggattg
     4321 gttcgattta catctgcaag ataaaaaaat cagcaaaacg tttgctcagg cgattgctcg
     4381 tcaagaaagt gcgtggaatg ctcaggctca atcgcacgct aatgcgagag ggctaatgca
     4441 actgttaccg acaacagcac aaaaaaccgc taaagataac ggtttaacct tcaaagatgg
     4501 caatgatctc tttcaaccgt ttaacaatat tatgttaggc acaacccatt taatggagtt
     4561 aaacgaaaaa tatccgaata atcggattct gattgcctct gcttataatg caggagcagg
     4621 gcgtgttgag cagtggctga aacgtagtaa cgggcagtta gcaatggatg aatttattgc
     4681 cagtatcccg ttttatgaaa ccagaggcta tgtacaaaat gtgctggcgt atgactacta
     4741 ttatcaaatg ctctatagcg atataaatga taaaaatgga ttaaaaatgt tctatcaaga
     4801 ggaattaaca agaaaatatt aaaaaatgct tgtgtttttg tgtagaaccg ctataatgca
     4861 ccccatcaga cgcggggtgg agcagcttgg tagctcgtcg ggctcataac ccgaaggtcg
     4921 ttggttcaaa tccggccccc gcaaccagtt ttaagctcac agctttggtt aaagttgtga
     4981 gttttgtttt atatgctgta gcaaatttgc aaaaaatttg gcaaaaaaga ccgcttgttg
     5041 tggttgctac agcaaaaaac aaaccgctta aagccccacg gtttcccgtc tggggctttt
     5101 ttgcggaaat tggtacagca ttaacgtatc aaagctggtt tatccggctt tttttatatt
     5161 tggagattat gacttggcaa ctttagaaca aaaattagaa gatttagtgc tcgattctat
     5221 tgaagcatta ggctttgaat tagtcggcat tgaatgccaa cgtgcaggcc gttttttaac
     5281 ggtgcgttta tatattgata aagaaggtgg cgtgacgatt gatgattgta gcgatgtcag
     5341 ccgccaagtg agtgcgattt ttgatgtgga agatccgatt gccgataaat ataacttaga
     5401 ggtttcttca ccagggttag atcgtccatt atttaccgtt gcccactatg agcgttttat
     5461 cgggcaagat gtagtgattc atttacgcat tccgatgttc gatcgccgta aatggcaagg
     5521 taaaatcaaa caagtagaag gtgatttcat cactttaacg gtagaaaatg aagatcgcca
     5581 gttcgcattt ggcaatattc aaaaagcaaa tttagttccg gtttttaatt tttaagataa
     5641 aggtaaactg acaaaatgag taaagagatt ttattagctg cggaagcagt ttcaaacgaa
     5701 aagcaattac caaaagaggc aatttttgaa gccttagaaa ccgctttaac cattgcaacc
     5761 aaaaagagcc gtgatttaga tattgacgtg cgtgtggtgg tagatcgtaa aaccggtgat
     5821 ttccaaactt tccgtcgttg ggctgtggtt gaaaatgtga ataatatgac ccgtgaaatc
     5881 agcttagaag cggcacaatt tgaagatcca aacgtacaat taggcgattt tattgaagat
     5941 gaagtagagt ctatcgagtt cggtcgtgtg gcgattcaga cttttggtca ggtagtcaaa
     6001 accaaaattc gtgaagcgga gaagacgaaa atcattgatg aattccgttc ggatttaggc
     6061 aaaattattc ttgccactgt gaaaaaagta acccgtgata atattttcct tgagttacaa
     6121 ggtaaatcag aagatatcaa aggcgaagcg gtcattgtgc gtgaagatat gatcccacgt
     6181 gaaaacttcc gcccgggtga ccgtgtgcgt ggtgtgttat acgaaatcaa gcctgaatca
     6241 aaaggacctc agcttttcgt tacccgtgct aaaccggtga tgttagaaga gctattcaaa
     6301 ttggaagtgc ctgaaattgg cgaaggcgta attgagatca aaggttcagc ccgtgatgtc
     6361 ggctctcgtg caaaaattgc cgtgaaaacc cacgataaac gtattgaccc ggtaggggct
     6421 tgtgtgggta tgcgtggtgc tcgtgttcaa gctatcagca atgaattagg cggcgagcgt
     6481 gtggatatcg tactttggga cgaaaatccg gctcaatttg tgattaatgc aatggctccg
     6541 gcagatgtaa gctctattgt gattaacgat gaaactcact caatggatat tgcggttgaa
     6601 gcgaaaaatc tggctcaagc tatcggtcgt aacggtcaaa acgtgcgttt ggcgacacaa
     6661 ttaactggtt gggcattaaa tgtaatgacc gttgaagagc taacgaagaa gagcgaagaa
     6721 gaagatggta aagtcatcaa tttattaact tctgctttag aaattgatga agaatttgct
     6781 caagttttaa ttgaagaggg ctttacgtct cttgaagcga ttgcttatgt gccggttgat
     6841 actttaacgg cgattgacgg tttagaagat gaagatttag tcgaagaatt acaatctcgt
     6901 gccaaaaatg cgatcacgaa aaaagcgtta gaagaagaga agttattaaa atcagctcaa
     6961 attgaagaaa aattattaac gcttgaaggt atggatcgcc atatcgcatt caaattagct
     7021 gaaaaacaga ttacgactct tgaagaactt gcagagcaag gtgttgatga tttagccgat
     7081 attgaagaac tttcagaaga gaaagctggc gagctaatta tggcagcacg ccaaatttgt
     7141 tggttcaact aagcaaagag gataataaaa tgacagaaga gaaaaaaaca ctttcgcttg
     7201 gtggcgctcg caaagcgagt aaagtgaata caaccacaac cagtggtaaa gtaaaagcgg
     7261 ttgaagtaaa agagaaaaaa ccgaaaattg atgcaaaagc attgcaagaa aaagcagcaa
     7321 aagaagctgc cgcagcgaaa gctagagctg aaaaagaagc agctgaaaag ttagccaaag
     7381 aaaaagccga agctgaagct aaagagaaag ctgcaaaaaa agcagcagaa tcgaccgcta
     7441 gtaaaccgat ttctgtgccg gtaatgccaa gcagcaaagc aaaagaagaa aaaccgaaag
     7501 cacaacaggt acagccaaaa caagagaaag cggttgatcc tgaaaaagaa gctaaacgca
     7561 aagaagaagc tgagttacgc cgtaagcaag aggaattagc tcagcaaaaa gcggaaatgg
     7621 aggcaaaacg tgctgcagaa aatgcccgcc gtttagcaga aattgctcgt gaagaagcgg
     7681 aagataacgg caacgaagat tttgatgatg agcgttttac ttcttcttat gctagagagg
     7741 ctgagcgtga taatgaccgc cgtagtgagg gaaatcgtgg tcgtaacggc aaaggcaatg
     7801 tggctaaagc gaaaaaaggc ggacgtgaag aggataaaaa cgaacgcagt gcagatcgtc
     7861 gcaaccataa agaagtaaaa ggcaaaggta aacaaggtaa gaaaggtgca gctttacaac
     7921 aagcctttac caaaccagct caagttgtta aagctgatgt ggtgattggt gaaactatca
     7981 ctgtggctga attggctaat aaaatggcag tgaaagcgac tgaaatcatc aaaatgatga
     8041 tgaaaatggg tgaaatggtg acgatcaacc aagttatcga ccaagaaacc gcacaattag
     8101 tggcggaaga acttgggcat aaagtgattt tgcgtaaaga aaatgagtta gaagaagcgg
     8161 ttttagaaga tcgtgatact cacgcagaaa aagtaacccg tgcaccggta gtgactatta
     8221 tgggccacgt tgaccacggt aaaacctcgt tacttgacta cattcgtaaa gccaaagtgg
     8281 cggcaggtga agcaggtggt attacccagc acattggtgc ataccacgtt gaaaccgatg
     8341 acggcaagat gatcactttc ttagataccc cggggcatgc agcctttacc tcaatgcgtg
     8401 cgcgtggtgc gaaagcaact gacatcgttg ttctcgtcgt tgcggctgat gacggtgtaa
     8461 tgccacaaac tattgaagct atccagcacg ccaaagcagc gggtgcgcca ttagtggtag
     8521 cggtgaataa aattgataaa ccggaagcga accctgaccg tgtagaacaa gagttactac
     8581 aacacgaggt tatttctgag aaattcggtg gcgatgtgca attcgtgccg gtatctgcga
     8641 aaaaaggtat ggggatcgat gatttactag aagccattat tctgcaatcc gaagtgcttg
     8701 aattaaccgc agtaaaagac ggtatggcaa gcggcgtggt aatcgaatct tacttagata
     8761 aaggtcgtgg ccctgtggca actatcttgg ttcaatccgg tacgctaaac aaaggcgaca
     8821 ttgttctatg tggttttgaa tacggacgtg tgcgtgcaat gcgtgatgaa aacggtaaag
     8881 atgttgaatc agcaggtccg tctattccgg tagaagtatt aggcttatca ggcgtgcctg
     8941 ctgccggtga tgaggcaacc gtcgtgcgtg atgagaagaa agcccgagaa gtggctcttt
     9001 atcgccaagg taaattccgt gaagtaaaac tggctcgtca gcaaaaagct aaactggaaa
     9061 atatgttcag taatatggca gccggtgatg tggcagaatt gaacatcatt gttaaagcag
     9121 acgtacaagg ctcggtagaa gcgatcagcc aatccttaat ggaactttca accgatgagg
     9181 tgaaagtgaa aattgttggt tcaggtgtag gtggtattac cgaaactgat gcaaccttag
     9241 ccgcagcttc taatgctatt atggtcggct ttaacgtgcg tgccgatgcc tctgcccgcc
     9301 gtgtgattga aaacgaaaat atcgatttac gttactactc catcatttat gagctattaa
     9361 atgacgtgaa agcagcaatg agcggtatgt tacagcctga attcaaacaa gaaattatcg
     9421 gcttggcaga agtgcgcgat gtgttccgcc acccgaaatt tggggcgatt gccggttgta
     9481 tggtgacaga aggtatcgtt aaacgtaaca acccaatccg tgttctgcgt gataacgtag
     9541 taatttttga aggcgagtta gaatctctcc gccgtttcaa agatgacgta tctgaggtgc
     9601 gtaacggtat ggaatgtggt atcggcgtta aaaactacaa cgacgtaaaa gttggcgacc
     9661 aaatcgaagt gtttgaagtg gttgaagtaa aacgtactat ttagcctaat tttgtgtagg
     9721 ggcgtattgc atacgccctt tgtatttttt agggcgtgaa gcatcacgcc cctataaaag
     9781 agaaaaatat gtccagagaa tttaaacgta gtgaccgtgt ggcacaggag ctacaaaaag
     9841 aagtggcggt gattttacaa cgtgaggtaa aagatcctcg cattggtatg gtgactgttt
     9901 ctgatgtgga agtatcaaga gatttggcgt atgccaaaat ttttgtgact ttcttatttg
     9961 ataacgatgc tgaagctatt aagcaaggta tgcaaggctt ggagaaagca agcccctata
    10021 ttcgaaccct tttaggtaaa gcaatgcgtt tgcgtattgt gcctgaactg cgttttatct
    10081 acgatgaatc gctagtcgaa ggtatgcgta tgtctaacct tgtgtctagt gtaatcaaaa
    10141 atgacgaaga aaaacataaa gaggactaat tgtgtctaga cctcgcaaac gtggccgtga
    10201 tattcacggc gttttcttat tagataaacc acaaggaatg tcttcaaacg atattctgca
    10261 aaaggtaaag cgaattttcc aagcaaataa agccggacat accggggcgt tagaccctct
    10321 cgcaaccgga atgctgccga tctgtttagg tgaagcgacc aaattttcgc aatttttgtt
    10381 ggattcggat aaacgttatc tcgtcaccgc aaaattaggc gagcgaaccg atacttcaga
    10441 tgcggaaggg caagtggtgg aaaccaaagc agttgcagtg acaaaatctc aaattttggc
    10501 tgctttggag aaatttagag gtgatatttt gcaagtgccg acaatgtttt cggccttaaa
    10561 acacaacggc aaacccttgt atgaatatgc ccgagcaggg attacggtgg agcgtgaggc
    10621 tcgcccgatt acgatttttg aactaaattt cattgaatac aaggctccat ttttaaccct
    10681 tgaggtgcat tgttctaaag gtacttatat ccgaactttg gtcgatgatt taggcgaaga
    10741 gttgggctgt ggtgcacacg ttacgatgct acgccgtaca gcagtggcag attatccgat
    10801 tgaaaaaatg atgagctatg cagatttgca aaatttagcc gaaaatcaac cgcttgcaga
    10861 gttagaccag cacttattgc cgatggatac ggcagtttct gcattagcaa aaataaattt
    10921 aagttcagag caaactaaag cggtgggttt tggtcagaga attagatttg ataatctgaa
    10981 ccaactttat ggtttggtac gtttatattc agaagatgaa caatttctcg gtgtggcaga
    11041 aatcaccaat gatactgtga ttcgtcctaa ccgaatgatt aacttaacgg aataagaatg
    11101 aaatcgataa tttttacctt acctttagcg attatcactt tagccttagc cggttgttca
    11161 agtgataatc aagaaagtta tgccggctta aacttagatg ctaaatacag taaatctcgc
    11221 tcggtcagtc attttaatga ttatgtgcat tttctgaaac agaaggcagc aggggcagga
    11281 gtgtctgcaa aaaccttaaa tgctcagaaa ttcattcatt acaacgccag agcggtgcag
    11341 ttagatcaac agcaagctgc acgaagacgt gacccgaatg taccgcctcc gccaccaaat
    11401 ccaagtttta aacaaagtat taactcaagc gaaggtggat caggcaagtg aacgttggta
    11461 tgaatataat agccagctta cccatgccag ccaaaaatat ggggtacaaa aagagtatat
    11521 tttggcactt tggggaatgg agagcagctt tgggcgtaac caaggggatt ttgatgtact
    11581 ttcggtgttg gcaaccctcg cctttgatgg tcgccgtgag aagttattta cgcaagaatt
    11641 tgtgaatgcg atgaaaatgc tcgatgacgg cacaattaaa cgctatgaat tgcttggatc
    11701 ttgggcagga gcgatgggac aaactcaatt tatgccaact tcttacttaa cctatgcagc
    11761 tgatggcaat aatgacggta aaaaagatat ttgggagaat gaagccgatg catttgcctc
    11821 gattgccaat tatctttcaa cagtaggttg ggataatcaa ctaccttggg gtgttgaggt
    11881 taaattagct tcaccgatgg atttaagttt cgccggtctt gaaaccaaca aagcgaaaac
    11941 attggcggaa tggcaagcct taggtattta tttagcttat ccgaatggac aagaatcggc
    12001 aaaattagct caattacacg gcaaagaggt ttggttgatt cgtccggata aagaagcggg
    12061 aagagcgttt ttagtttcta ataatttccg tactttaatg gattggaata aatcgaataa
    12121 ccttggtatc agtatcggaa aatttgccga tcgaatttta gcttcagttg gtcaataatc
    12181 gaataaaagc atagtagcaa agcctatcta tgcttttatt ttatcaaagc gtcgcctttc
    12241 ttctgcaaac gacgttgctt aaaaaaatca ctgatctttt ggctacattc tctgcccaat
    12301 acattgccat gcacttctaa gaaatggttc attttataat cttcaaacag atgatagcgt
    12361 gaacctaccg cacctgtttt ataatcactt gccccaaaaa ccaatcgctt aatccgacta
    12421 tgtaaaattg caccggcaca cattgggcaa ggctcgagcg taacataaag ggtacaatct
    12481 aacagacggt aattccctaa agtttgtcct gcttgacgaa ttgcctgcat ttcagcgtgt
    12541 gcagatggat cacagagttg aatggtttgg ttccagcctc tgccgataat ctgttggttt
    12601 ttatcaacca gtactgcccc aaccgggatt tcgccttttg cttcggctaa atcagcgaga
    12661 tcaagggcgt attgcataaa ggcgatgtct tgctcggaga tctgaagtgg acaagaagtt
    12721 tgatttggtt tgataaacat agttgcaaaa aattgagttt ttttgaccgc ttgtaaaatg
    12781 ccccacgagg gtggggcatc gcttacttcg cttagtgtcg tttagtcacg acgaccacgt
    12841 ttttcactga aacgtttttc tttaaagcca cctttgcggt ctttattgaa acccccgtct
    12901 cggcgaccac cacgatcatt acgatcgtta ccacggcgac cacgaccttc aaatggattt
    12961 gcattacttg cactgtttgc agagccaagt aatgtcatct gcattggttt gcttaataca
    13021 cgtgctttgt gagcgaaatg ttgtacgaga tgatttggca ttccttgcgg caactcaatg
    13081 gttgagtatt tatcataaag tttgatatgc ccgatgtaac ggctgctgat atccccctcg
    13141 ttggcaatcg ctccaacaat atgacgaact tccacaccgt cttcacgccc caattcaatg
    13201 cggtataaat ccattgccac accattgttt tcacggtgtt cacgaccgtt acgacgatcg
    13261 tttcgctcat tgcggtcacg tccacgttca gaacgggcag cacgcacaac cggatccggt
    13321 ggcagaatca gtttttgttt ttcttgcagt aacatcatca tcgccgctgc taattcttcg
    13381 tggtcttgat ccgcagtaaa taaatcttcc aacaattcac gatatttttc taaatcgtga
    13441 tgttctaact gcttagaaat gcgggctttg aatttctcac ggcgtttttc cattaaaatt
    13501 tcgtggtttg gaatcgccac ttcattaatt ggttttttga ttaaattttc gatattgcgt
    13561 aataagcggc gttcacgagg ctcaacaaac agtaaggcac gacctgaacg accggcacga
    13621 ccggtacgtc cgatgcggtg aacataagat tcttcttcta acggaatatc gtagttaata
    13681 accaagctga ttcgctcaat atcaatacca cgggcagcaa catcggtggc gactaaaata
    13741 tctaaacgac cggagcgtaa tttatctaag gtttgctcac gggcttgctg ggtcatatcg
    13801 ccgtttaatg ccgcagtacg gtagccgttg cgttcacaca attcggtaat atcaatagta
    13861 ccggttttgg tgcgggtaaa gatgatagca gcatcaaatt cttctacttc taggaaacgc
    13921 aataacgcat cgtttttacg gaagccgttt accagccagt agctttgttc aatatccggg
    13981 gctgaacgct cggttgcctt aatttttacc tcttgcggat ctttcataaa acgacgggta
    14041 atacggcgaa tcggctccgg catggtggca gagaagagag cagtttgatg tgtttccggt
    14101 aattcagcca ttaccgtttc aacatcgtca ataaagccca tacgcagcat ttcatcggct
    14161 tcatctaaca cgatgaattt taattcggat aaatctaatg tgccacggcg gatatggtca
    14221 agaatacgcc caggtgtacc cactactact tgtgagcctt gttttaaagc acgtaattga
    14281 atgtcgtaac gttgtccacc ataaaccgtc actacacgaa tgcctttcat attttttgca
    14341 aactgctcac aagcatcggc tacttgaatc gcaagctcac gggtgggtgc catcaccaac
    14401 atttgcgggt ggcgttgtgt tgggtcaatt tgtgccaaca gcggcagcga gaatgcggcg
    14461 gttttaccgc tcccggtttg tgccatacca agcacatcac gaccggctaa taaatgagga
    14521 atacattctt gttgaatggg tgatgggttt acaaagccca tttcatttac agcatcaagg
    14581 attggttgag gtaagcctaa atcggcgaaa gttaaagatt cagttgtcat aaaaaaccat
    14641 ttgtttggaa cgcacaaagc agaaaatatc gactattttt ctgcacagcc attaatgaaa
    14701 attatattgt tgaaatttag gaagaaatga aataacaaag caagtgatgc tttaaaaatc
    14761 ccctgagtat aagcggttaa atttacaaaa ttttttgcga aattaaccgc ttgtattgtc
    14821 ctaatctttc cctattcttt atcaacaacg ggagtcgttt gagtcatacc acgaatttgt
    14881 gataactcaa acagggcaaa acgatactca acgaagttaa acacttgatt tgcaagagca
    14941 agacgaaaga ggctgattgc ctcatcttta tgatctaatt tgagttgttg ttttgctaag
    15001 tagaaatacg tttctgtcag tatttctgca tattgtgagc tattttcctt agcgtcacgt
    15061 tccattatag cacgaacttg agctaaattg agcttcccta aaaaataatt tacgatattt
    15121 gttccccagt aatccgaaga aagattatta gctcgctttt gtaaattatt tttagcttct
    15181 gttggtgtaa attccagctc attaaaatag agccataatg ctcgataagg atctttctta
    15241 tcttcttcat aaaaatggag aagatcacgc tgggcttcag aatatctgcc gctataatag
    15301 aaagccaaac ctcgattgag ataggtgtag ctatattccc gatctaattc caatacggca
    15361 ttaaacgcat caatcgaact gtcgtaatcg ccttccagca gcagatacag ccccatatag
    15421 ttataagctg ccgccatacg ttgattgagc gaaatggctt gagcaaaatc ataacgggct
    15481 aacgaccata aacctaaact gtcgtaaata acgcctcttt caaaatagag gtctgcttgc
    15541 tcagagggcg ttaatggggc ttcttccaat acttggctga gtcttaccac cattgcctct
    15601 tgttcaaagc gaagttgagg attaagttct gccaatgcta agtttttaat tgaaaccaaa
    15661 tcggcatacc gactggtaca gccgcttagc attaaaacag aaattaaatt cagtaataag
    15721 aaacggattc gaaacaactt aaaaagttgt accattacag catatccctc aattaaggaa
    15781 aattaaaaac tgaataacgg acactcaaag tccgttattc gcctttatta ttgaactaga
    15841 aattattttc ttgttctgtt tctaccacat tttcagctac agtttcttct gcatttgcct
    15901 cgttggtatt attgatgtct ttcatcgtca gacgaatgcg tccttgacgg tcaatttcta
    15961 ccactttcac ttgtacttct tgaccaacgg ttaagtagtc cgctacacgc tcaacacgtt
    16021 cgttggtgat ttgtgaaatg tggactaaac cttctttgcc acctaagatg gaaacgaatg
    16081 caccgaagtc caccacacgg gttactttac cgttgtagat ttggtttact tccacttcgg
    16141 caacgatctc ttcaatacga gccattactg ctttcgctgc attgccgtca gttgccgcaa
    16201 ttttcaccgt accgtcatca tcaatgtcga tagaagtatt ggtctcttcg gttaaagcac
    16261 gaattgttgc accgccttta ccaatcacat ctttgatttt cttcggatcg atcttcattg
    16321 tgtgaatgcg tggggcatag tcagaaatat ctgcacgagg tgccggaatg gcttgttcca
    16381 ttacacctaa aatgtgcatt cttgcacctt tagcttggtt taaggcaata cgcataattt
    16441 caggggtgat cccttcgatt ttgatgtcca tttgcagcgc agtcacaccg gtacgggttc
    16501 ccgctacttt aaagtccata tcgcctaagt ggtcttcatc acctaagatg tcagaaagta
    16561 ccacgaattt ctcgtcttct ttcacgagcc ccattgcgat accggcaacc gctgctttga
    16621 ttggcacacc tgcgtccatc aacgcaagag acgcaccaca cacagatgcc attgaagaag
    16681 aaccgttaga ttcagtgatt tcagacacca cacgcactac atacgggaac tcttcagcgg
    16741 ttggcatcac ggctaatacg ccacgttttg ctaaacgacc gtgaccgatt tcacggcgtt
    16801 ttggcgagcc gatacgaccg gtttcgccca cagagtatgg agggaaattg tagtggaata
    16861 agaaacggtc agatttttcg ccggtcaatt cgtcaatgat ttgggcatca cgctctgtgc
    16921 ccaatgttgc tactgctaat gcttgggttt cgccacgggt gaaaagagca gaaccgtggg
    16981 tgcgtggtaa cacactggtg caaatatcca atgcacgcac ggtatccacc gtacggccgt
    17041 caatgcgtgg ttcgcctgca ataatacggc tacgcacgat ttggctctct aatgcggtga
    17101 tgatgtcgat gatagtccct tcagaaacag tttcatcttc tgcggtaagt tgtgcaatca
    17161 cctctgcttt aatcgcatcg atttgctcgt aacgaacttg tttttctacg atacgataag
    17221 catcgccaag gcgtgtttct gctaatgctt ttactttgtt gattaaatct gtatttggct
    17281 ctggtgcaac ccaatcccaa cgtggtttgc ccgcttcttt aacaaattct ttgatgtttt
    17341 cgattacaac ctgttgttgc tcgtggccga acaccaccgc cgctaacatt tgctcttcgg
    17401 ttaagatatc cgcttcagat tccaccatca acacggcttt gtctgtacct gaaaccacta
    17461 aatctaagcg gctgattttt tgctcgctgg tggttgggtt taatacgaat tgatcgttga
    17521 taaaaccgac acgagccgca ccgattggac cgttaaacgg cacgccggat aatgaaaggg
    17581 cagccgatgc accgatcatc gcaaccagat caggactgat ttgtgggttt accgatacta
    17641 cggtcgcaat cacttgaatt tcgttaaaga aaccttctgg gaaaagtgga cgcacaggac
    17701 ggtcgatcaa gcgagcgatt aaggtttcac cttcgctagg acgtccttca cgtttgaaga
    17761 aaccgcccgg aatacgaccg gctgcgtaag tacgctcttg ataatctacg gttaatggga
    17821 agaaatcttg cccttctttt acgtcttttt tcgctactac ggtaacaaat acggttgtgt
    17881 cgtccatact tgccattact gctgccgttg cttggcgtgc gatagcaccg gtttctaagg
    17941 tcacggtgtg ctgaccgtat ttaaactgtt ttacaattgg agtcattgaa attttccttt
    18001 taaagaattt actattattg tcgttttatt tctctaaatt gcgactagca aaaaggcttt
    18061 taagtaaaac atttttgata gccgcctctc aataacaaga aataaaactt gtctagtata
    18121 gcgtgatttt tataaaaaat cgcctattat tttgatcttg cacctcagtt ataaagaaat
    18181 tcaaaacttc agtgtaaaat ggggattagt ttgtgaaaag ccttgtgaaa atagtttgat
    18241 tgcatcgcta tttttttatt agaggtagtt taaaactaaa tctgcttcct ttaccggctt
    18301 cactttcaat ttccagtgtg gaatggtgct gttcaagagc gtgtttgaca atagccagac
    18361 ctaaaccgct accgccggtt ttgttgctac gagattcgtc cacacgatag aaacgttctg
    18421 tcagatgggt aatatgatgg gcatcgatac caataccgtc atcttgcacg ctgaaaatcg
    18481 cagtattcgg ctcttgatta tcacgttgac aacatatttg aatggtaact ccttcaccgg
    18541 cgtgccgtat tgcattgtaa attaaatttg atacagcgct ttggagttgc tcttgatctc
    18601 cccataccgt taaattaggc tcaatatcaa acagtatttg ctgattttgg cttaaaatct
    18661 cggtattttt ttgtatggcg gagattaacg ccgacatctg gacctcattg tgttcggaat
    18721 cattggaatg ctcgatttta accaaaagtg agagttggcg aagcaggtta gtcatacgtt
    18781 gactttgctc tttcatcgca ttgagcgctt tttgctgtaa tgccatatta tgcggctcgt
    18841 tttccagcat ttccaaataa ccttgtaata tggtaagagg tgttcgcagt tcgtggttca
    18901 tatttgccaa aaaggtttgt cgtgagtgca taaggcggac aaaagaggtt acatctcgtg
    18961 cgacaataag tctggagtta ctgtcatatc gattgagatt caattcaata tagcgtttat
    19021 tatgagtcag cagtaccaat gggcgatggt gtcgttgttg gcggaaatag cttttaaatt
    19081 caggataaaa aatcacatta aaaatgcttt tatttgattt tttgtcccaa taaaactcaa
    19141 atagctcttg tgcaacatta ttgcaccaag aaatctcccc gttttcttgg caaataatga
    19201 tcgcatcggg taagtattga atatgcttat ttaattttga taacagacgt aaggttttga
    19261 ttttatcttg gcgtaaacgt tcgtgataga atgcggcact ttgagataaa tgctccattg
    19321 tcgttacttt tgacctgccg ctttgctcat taggtctgag taactgaagg agagaagatt
    19381 cggtgtggtg atgccaaata agtagaacca gtaaacaaaa actaaaccag aaaaaataag
    19441 cagggaaaaa cagattgaat acgccggcaa cggctgctgc cagcaaaagt tccaataaaa
    19501 agtgtttaag tgagagctta actttcatta ttagtcctga aaatggttgg aaaaacggta
    19561 tcccgagcca cgtacggttt gaatataacg ctcaaaacca tagggttcaa gactcttacg
    19621 caatcgccga atataagagt ctaccgtgcg atcctcaaca taaatatcat taccccaaat
    19681 aaaatcaagc aactgttcac gacgatacac tttttcaggg tgagtcatta aaaagtgaag
    19741 cagtttatat tccgtgccgc ttaatttcac ttcctgttcg gcaaccaaaa cccgttgtgc
    19801 ctgttgatca agaatcaatc cgtctatatt gatgagattg cttggcggat catagcttcg
    19861 ccgccatact gcttcaatcc gggcaagcaa cacctgtggt gaaaacggtt tggtaatgta
    19921 gtcgtctgca ccggcattca gaccggtaat acagtcttct tcgctactgc gggctgttag
    19981 cataatgatt ggaatttttt cggtttcagg ctgttttttt aggtatttaa ttaaatggat
    20041 acccgaacgc cccggcatca tccaatccag taaaataagc tcgggttttt cgcccagttt
    20101 attgatagca ctttggtagt cttccgcttc aattacctga tattgtttgc tgagatagag
    20161 acttagcatt tcacgaatag cacgttcgtc ttcaacgatc agaattttgt tattcattct
    20221 tcctctccga tgcggtgtga caagcggtcg atttatcgca gaaatttgca aattttttac
    20281 taaaaccgac cgcttgcaga ttaccccatt ttacctttaa tgtaatcttc cgtctgccgg
    20341 aattttggtt tgtcgaaaat ttgtttggta tcaccgaatt caatcagctc gcctagatac
    20401 atataagcgg tatagtcaga acagcgggct gcttgctgca tattgtgggt aactatcgct
    20461 accgtgtagt cgtgcttgag ttcgttgata agttcttcga ttttcatagt cgaaatcggg
    20521 tcaagtgcgg agcagggctc atccagcagt aacacctcgg gtttcactgc aatacctcgt
    20581 gcaatacaga gccgttgctg ttgcccgccg gagagactgt caccattttg gtttaattta
    20641 tgctttacct cattccataa agccgctttg gttaatgccc actctacacg atcgtttagc
    20701 tcggatttcg gcaatttttc aaacagacga ataccaaaag caacattatc gtaaatggac
    20761 atcgggaatg gggtcggttt ttggaaaacc ataccgactt tggctcgaat aatcgaaata
    20821 tccgtatcgg aggtgagtag attctctcca tcaagattga tttcccccgt tgcacgttga
    20881 ttcgggtaga gctcaaacat tcggtttagg gttcgcagta atgttgattt tccacaaccg
    20941 gaaggaccga taaatgcggt cactttattt ttggcaatac gcatattgat atttttcaga
    21001 gcgtggaaat cgccataata aaaattgagg ttgttaatat gtaattttgt ctctaaatcc
    21061 gttggtaaca tatagagtcc ttattttgtt ttgctgaaat acagacgagt gatgatatta
    21121 agagaaagca caaacagagt aataagcatt gcacctgccc aagccaatgt attccagtca
    21181 gcgaacgggc tggctgcgta ttgataaatc accacaggga ggtttgccat tggtgcattc
    21241 atatctaaag aggcaaactg gttggataat gcggtaaaca atagcggtgc ggtttctccg
    21301 gaaatacggg caacagcgag caacacgccg gtaataatgc cggagcgggc ggcacgataa
    21361 gagatcattg taattaccct ccatcgtggg cagccgagag ccgcagctgc ttcacgcaga
    21421 ttattaggca caagattgag catactgtcg gtagttcgaa caacaatcgg aatcactaat
    21481 accgccaatg ctaatgagcc tgcccagcct gaatagtgtt taacctgtgc gacataaatc
    21541 gcataaataa ataagccgat aataatagaa ggagcagaga gcaacacatc attcaaaaaa
    21601 cgggtgaatt ttgccaattt ggtataacgc ccgtattcgc tcaagtaagt gccggctaaa
    21661 ataccgattg gtgttgcaat cagtgttgcg gtactgacaa tcagtataga gccgacaatt
    21721 gcattacgta atcctcctgt ttcatttggt gcaggagtcg ggcgggtaaa cagttcccaa
    21781 gacagtgcag ggataccttt ttggagtaaa gtaacaataa tccagaccag ccaaaataag
    21841 ccaaataata cagcggaata ggcaagactt aacatcaaga cattttttat ttttcggcaa
    21901 taaaagcgtc ggttttggta atttttcatt ctcgttttcc ttcctgttta cccattcgtg
    21961 cgattaataa acgtgaagcg gctaaaacaa tcgaagtaat aaggaacaga attagcccta
    22021 ggctcatcaa cgctgatttt tgtaatccgc cggcttcatt aaattcattg gcgatagcag
    22081 aagcgatgga ggttgaaggg gaaaataccg aatcaggtag cataaaggca ttaccgatca
    22141 caaaggtaac tgccattgtt tcgcctaatg ctcgacctaa cccgagcata attgcaccga
    22201 ttactccggt tttggtgtaa ggtagcacga ctttccaaat aacttcccaa gtggttgagc
    22261 ctaaaccgta agcagactct ttcagtaaag gcggtacaac actgaaaaca tcacgcataa
    22321 ttgaggcaat aaagggaata atcataatcg ccaataccaa gccggcactg aatagcccga
    22381 tcccgaaagg agctccgcta aaaagcatac cgataaaggg aagctgacca aatgtatcta
    22441 tcaaatacgg ttgcacatat tcttgaaata agggtacaaa tacaaacagc ccccacatac
    22501 cgtaaataat agagggaata gccgctagca tttctaccgc tgtgccgaca gggcgtttta
    22561 gccattgcgg tgcaagttcg gttaagaaag tcgcaatgcc gaacgagacc ggaacggcaa
    22621 tgactaatgc aatgccggca gaaatcaatg tgccgataat cggcactaat gcaccgtatc
    22681 ggtcattcac agggttccac tcgttttccc ataggaatga taccccgaat cggcttaatg
    22741 cttcccaact gccaagcaat aatgaaacca gcaccaccac caacaaggca aaaaccagca
    22801 aagcaaagaa acgggttgtg tgatgaaata acccctctac ccaaggatgg tttaagcatt
    22861 tgttatcaat tttatgttta tgcatagtga caactctttt gcaaaatgtt gtgaaaaaac
    22921 gaccgcttgt tgttagttaa gctccataca agcggtcgtt ttgcattagt agagcgaatt
    22981 tccttgtcca tctttaactt ccgttttcca ttgagtttgg attttctcta ctacattatc
    23041 cggtagaggc acataatcca gttcggcagc cgcatcttta ccgtgcttaa atgcccagtc
    23101 gaagaattta aatacccctt tagtttgctc tggtttgtcg ctatgttgat gaatcaagat
    23161 aaaactggcg gcggtaatcg gccaggcttt ttctcccgct tcgttggtta aaataacgcc
    23221 cataccggct gtttggctcc aatcggcgtt agcagcggca gcagcaaacg tttcacggga
    23281 aggctgaaca aatttaccat ctgcattttg catagaaacc caagccagag cattttgttt
    23341 agcataggca tattctacgt aaccaataga atacttgagc tgtttcacat aagctgcgac
    23401 accttcattt ccttttccgc cttgtccgac cggccatttc accgattttc cttcgccgac
    23461 tttctccttc cattcggcag agactttaga aagatagttt gtccaaccga aagttgtgcc
    23521 tgaaccgtct gagcggcgta cgactaaaat tgtttttgcc ggcagggcga tatcttgatt
    23581 aagtgcgaca attgccggat cgttccattg tgtaattttg cctaggaata tatcggcaag
    23641 aactttaccg gacagtttca gttcgcccga tttaagttca ggaatattga caaccggtac
    23701 agttccccca atgatggcgg gaaattgcaa aagtttgtgt tctgctaatg tttcgccttt
    23761 catcgggtca tcagaagcac cgaaatcaat tgttttggca ataatttgtt gctgaccgcc
    23821 accggaaccg atagattggt aattgatttt attaccggtc tctttttcat ataaacctgc
    23881 ccatttggcg tagataggat aagggaaaga agcaccggct cctgtgatgg tttgagcatt
    23941 tgctgcgaca gaaagtgaaa aagaaatgcc taaaacggta agtagtttaa atcgtttggc
    24001 aatcatattg ttctccttaa agttagcgtg agttaatttc acgtgcttag tgtagaaaaa
    24061 gaatatgaca aaatgatgac aatggtaaaa aaatcagaaa aaacgaccgc ttgtgtttca
    24121 ggctagacta aacaggctaa atcgtagaaa atagccctcg tttttttaat ataaatatcg
    24181 ataaaaaatg accacagaaa tcaattatga aggcattgaa cagatgccga ttaagcgttt
    24241 taccgaagat gcttacctca attattcgat gtatgtaatt atggaccggg cattgccgtt
    24301 tattggcgat ggcttgaaac cggtgcaacg ccgtattatt tatgcgatgt cggaacttgg
    24361 gctaaacgcc tcggcaaagt ataaaaaatc agcccgtacc gtgggggatg tattaggtaa
    24421 attccatccg cacggtgata gtgcctgcta taaagcaatg gtgctaatgg ctcaaccgtt
    24481 ctcttaccgc tatccgttag tggacggaca aggcaactgg ggggctccgg acgatccgaa
    24541 atccttcgct gcaatgcgtt ataccgaatc gaaactgtct aaaattgcag aaattttatt
    24601 gggcgagtta gggcaaggaa cggtggatta tcagccaaat tttgatggct cgttggaaga
    24661 accgaaatat ctgccggctc gtttaccgca tattttgttg aatggcacga tggggattgc
    24721 ggtgggaatg gcaaccgata ttccaccaca caatattaat gaattggctg atgccagtgt
    24781 gatgttgctg gataacccga aagcaacgct tgatgatgta ctaagcgtgg tacaagggcc
    24841 ggattacccg acagaggctg aaatcatcac accaaaagcg gaaattgcca gaatgtatga
    24901 gcaggggcgt ggttctatta aaatgcgtgc ggtgtggaaa aaagaagagg gtgaaattgt
    24961 gatttcagcc ttgccgcacc aagcctctcc ttcaaaaatt attgagcaag tagcaaccca
    25021 aatgcggaat aaaaaactac cgatggtgga cgatattcgt gatgaatctg accacgagaa
    25081 cccgattcgc attgtgattg tgccacgctc taatcgcatt gattttgatg cgttaatgga
    25141 tcacctgttt gcgacgaccg atttggagaa aagctaccga gtcaatatga atatgattgg
    25201 cttagacggc aagccggcag tgaagaattt gctgactatt ctcaatgagt ggctgagttt
    25261 tagacgtacc actgtcactc gccgcctgaa ttaccgatta gataaaattt taaaccgctt
    25321 gcatatttta gacggtttga tgattgcatt tctcaatatt gatgaagtga ttgagattat
    25381 tcgcaatgaa gatgagccga aagccgagtt aatggctcgt tttaatctga ccgatgtgca
    25441 agcagaggcg atcctgaact tacgtttacg ccacttagcc aaattggaag agcatcaatt
    25501 acaggcggaa aaatccgaac tggaaaaaga acgtgatgaa ttgcaactga ttttaggctc
    25561 ggaacgccgt ttgaacagcc tgatcaagaa agagattcaa gccgatgcca aagcatttgc
    25621 cagcccacgc cgctcaccat tggttgaacg agcggagtct aaagcgattg cggaaagtga
    25681 cttgactcca accgaagatg tgactgtgat tttgtctgaa aaaggctggg tacgttgtgc
    25741 gaaaggacac gatattgatg ttcaagccct aagccatcga gccggagatg gttatcttgc
    25801 ccacgcaagg ggtagaagta atcagcctgt ggtattttta gacagtacag ggcgagctta
    25861 tgctctcgat ccaacttcac tgccttcggc acgctcgcaa ggcgaaccgc ttacaggcaa
    25921 aatcacccta ccggaaggtg cagtagtgca gcaagtgcta atggcaagtc cagaaactaa
    25981 agtgctaatg gcatccgatt caggttacgg ctttatttgc acctttgcag atttagtttc
    26041 tcgtaataaa gccggcaaag cggttatttc tttaaccgaa aatgcaaaag tactgccgcc
    26101 gcaattattg gaaaatgatg aaaatttatc gcttgtagcg atgagtaatg ttggcagaat
    26161 gttggttttc ccggtgagtg aattacctca actttccaaa ggtaaaggca ataaaatcat
    26221 caatatttcc gccgcagcgg caaaatccgg tgatgaatat ttagcccgtt tattagtcat
    26281 caaaccaacc aactcgctgg tctttgtgtc cggtaaacgc aaaatcacat taaaaccgag
    26341 cgatgttgat aactaccgtg gcgaacgagc aagaaaaggc tcacagctag tgagagggct
    26401 tagtaccaat tcaacggtag agattgttga gtaaagagaa gaagcggtta gggggtaaat
    26461 ccaacaattt tgccccaaat aaccgcttgc aatggagtta ttgcttattc aaataagcct
    26521 ttgtgaagcg aacgaaccac atcgtctgct tctgcatttt tcactaaggt acaaacatta
    26581 ttgctgcttg ctccatagct gattaggcga atgttgtaat tctcaagagt gtggaataat
    26641 tttttcgcca caccggactg agcgtgtaag ttgttgccga taatagcgac taaagcgagg
    26701 tcgctttcta cttgcacatt gcaatatgcg ttaagctcat cgagtaattc cgctgataac
    26761 atatctgcac ctgaagaggc tgagcccgtt ttatctaggg tcaatgcaac gctgacttcg
    26821 gaagtggtaa tcacatcaac cgaaattttg tgtttcgcta aaatcgcaaa tacattcgct
    26881 aagaaacctt gtgcgtgtag cattgaaagg ctggaaagcg tgagtaaaat ttggttgcgg
    26941 cgtaatgcaa tcgcacggaa agtcgggcgt ggttgtggat cacgggttac ccaagtgccg
    27001 ccttgttccg gtgctttgct tgagccaaca tatacaggga tattgctacg cactgccggt
    27061 aataaggttg ctgggtgtaa tactttcgct ccaaatgttg ccatttctgc cgcttcgtta
    27121 aatgccattg tgtcaatgcg ttgagcgttc ggtacaacac gaggatcggt ggtataaatc
    27181 cccggtacgt ctgtccaaat gagtacatcg ttagcattta atacttctgc taacaatgca
    27241 gcagagtagt ctgaaccgcc acgtcctaaa gtagtggttt tgccttcatc atcacgacca
    27301 ataaagccct gtgtaatcac aattttgcct gatgcgatta atggcttaat cacattgtct
    27361 gattgttgct gggttttctc gtcatttggt gctgcttttc cataatggct gtttgttgcc
    27421 acaacgtcac gcacatctac ccatactgcc gggtgtccac gttcaattaa taattgcgtg
    27481 aagattttgg tggacatcat ttccccatgg ctgattaact catcacttaa ggcagctgaa
    27541 gtagcaaggc tggctgattc tgctaatgtt tcaatacgtt ctaataattc gtcgatttcc
    27601 gctttaacgg catcttgatg ttgtaatttt tcaataatat tgtattgaat ttggcggact
    27661 gctgcgatga cttcatcacg gtgttctttt tcacagccgt tagcaagttc cactaagtaa
    27721 ttggttacgc cagcagaggc agaaagtacc accacacgag tatttgcatc agcaattaca
    27781 atattggcag aagaggtcat tgcatcaaaa tttgcaacac ttgtaccacc aaatttagcc
    27841 acagaaagat gagacataat aaaaatttcc ttaaaacaaa aatagataaa tattgtgtta
    27901 ggggatattc ggaaaggaaa tttgagtaga ttatacggtt ttattgttga accaattaat
    27961 cagagcactc catttaatat ggtgaaataa cctattaaat gacagctgat aggattcaac
    28021 ctattcagcc gatgttaatt ccagtctagt gaattcacac ctcggcaatc actcccatca
    28081 cttaattctc aaacggccct agttgcctaa aatcaagttg cctgagtgtt gcacctctcc
    28141 cgtaatggca agcccattac tctttttcaa cagtattgaa aagtgtgcat agaaataccg
    28201 ttttattaat gttttgtcaa
//
LOCUS       DANMBQ010000016        28082 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.016, whole genome shotgun sequence.
ACCESSION   DANMBQ010000016 DANMBQ010000000
VERSION     DANMBQ010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28082
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.016"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            120..848
                     /gene="fabG"
                     /locus_tag="PXE92_000644"
     CDS             120..848
                     /gene="fabG"
                     /locus_tag="PXE92_000644"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL5759920.1"
                     /translation="MNNTVLITGSSRGIGKAIALTLAQQGFDIVVHCRSRVEEAEAVA
                     QAVRNLGKNARVLQFDVADREKVRSILEADVEQHGAYYGVVLNAGLTRDNAFPALTDE
                     DWDSVLRTNLDGFYNVLHPIMMPMIRRRKAGRIVCITSVSGLIGNRGQVNYSASKAGI
                     IGAAKALAIELAKRKITVNCVAPGLIDTDILDENVPIEEILKMIPAGRMGDPDEVAHA
                     VAFLMDEKATYITRQVIAVNGGLC"
     gene            911..2056
                     /locus_tag="PXE92_000645"
     CDS             911..2056
                     /locus_tag="PXE92_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HDL5759921.1"
                     /translation="MKRVVITGIGVVTAFGKEWAEIHGYQPPKHWNRKQLRSLGRVSQ
                     FVVEASERALAQAGLLDENGVIFDWLKDRRMGVACGSSTGSTNDIKDAAELLMTGKSD
                     GFNANTYVRMMPHTTAANIGIFFGLTGRIIPTSSACSSGSQGIGYAYEAIKYGMIPMM
                     LAGGGEEFCASKVYVFDSLYAASRRNDNPKGTPRPYDKDRDGLVIGEGAGMFVLEELE
                     HALARGANIIAEVVGYGANSDGSHVTRPQATTMQRCMELALKDAGIQPNQVGYVNGHG
                     TATEQGDIAETQATTAVFGKIPLSSQKSYLGHTLGACGALESWFSIEMMRDGWFAPTL
                     NLENVDERCGDLDYLQGDGREIHTDYVMNNNFAFGGVNTSLIFKRWK"
     gene            2070..2975
                     /locus_tag="PXE92_000646"
                     /pseudo
     CDS             2070..2975
                     /locus_tag="PXE92_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251927.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dialkylresorcinol condensing enzyme"
     gene            2998..4140
                     /locus_tag="PXE92_000647"
     CDS             2998..4140
                     /locus_tag="PXE92_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HDL5759922.1"
                     /translation="MLSNVYITNTSAFLPNAPVSNDAMEAVLGMVGETPSRVRKMILR
                     SNGIQHRYYAIDPITRQATHSSTELAVQAVKKLGNSATSATCLAVGTSYPDQIMPGQG
                     VMVHGLLDAEPMEVLTTAGVCVAGMAAMKHAYNAVRIGEHRAAIATASETASAIMRSE
                     HFRAEIDHKKLDDARPEIGFEKDFLRWMLSDGAGAVLLANQPNEKGLSLKIHWIDLVS
                     YANEMPVCMYAGAEFIDGNYTGWKAMSEAQRAECSAMAVKQDVKLLNENIVKYTVEKA
                     LERIIPKYKLNAEEIDYFLPHYSSGSFRDKLLEGLQRINFLIPQEKWFTNLTTKGNTG
                     SASIYIMLDEFIRTHDLKQGQKILCYVPESGRFSSCFMLLEAVVNS"
     gene            4189..4404
                     /locus_tag="PXE92_000648"
     CDS             4189..4404
                     /locus_tag="PXE92_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL5759923.1"
                     /translation="MDINDIPQDNSKIFNGERKVIYARNPQPEIRQMISSILACYAWD
                     ENNPFVAKSDARLKALAEVVGKAEIGD"
     gene            4685..5176
                     /gene="rplJ"
                     /locus_tag="PXE92_000649"
     CDS             4685..5176
                     /gene="rplJ"
                     /locus_tag="PXE92_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDL5759924.1"
                     /translation="MALNLQDKQAIVAEVNEAAKGALSAVVADSRGVTVEKMTELRKA
                     AREAGVTMQVVRNTLLRRAVEGTEFECLTDTFTGPTLIAFSNEHPGAAARLFTEFAKT
                     NKEFELKGAAFEGKKQDVAFLATLPTYEEAIARLMGTMKEAAAGKLVRTLAALRDQME
                     AAA"
     gene            5235..5603
                     /gene="rplL"
                     /locus_tag="PXE92_000650"
     CDS             5235..5603
                     /gene="rplL"
                     /locus_tag="PXE92_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDL5759925.1"
                     /translation="MSLTNEQIIEAIASKSVSEIVELITAMEEKFGVSAAAAVAAAPA
                     AGAAAAEEKTEFDVVLAEAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISK
                     AEAEALKKELEEAGAKVEIK"
     gene            complement(5710..6540)
                     /locus_tag="PXE92_000651"
     CDS             complement(5710..6540)
                     /locus_tag="PXE92_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL5759926.1"
                     /translation="MVQKPLNHYLEMQEHFLYVPYLHHHRRIRVLLPKDYHNEGWERY
                     PVLYMHDGQNVFYSKESYSGHSWKIIPTIKSHQELPKMIIVGIDNAGANRLNEYGPWK
                     TTTGSTPETRNAGGLGEEYAKWVVETVKPFIDIHYRTKPQQEHTLLAGSSMGGIITAY
                     MGSRYPHIFGHLGVFSLASWFSEPDFLRFTHQYPLQPNTKVFIQVGTNEGDEIDSHFI
                     SNTNQTYIDCSLNYYQALIRIGVPLDNIRLRIMANEIHHEMHWADHFVEFLHFSLLRK
                     "
     gene            6766..8307
                     /locus_tag="PXE92_000652"
     CDS             6766..8307
                     /locus_tag="PXE92_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HDL5759927.1"
                     /translation="MQASLQDILEVVKAKNLTYQQKLMSLGNIAERLFNPIELLGYTE
                     EEWEHIENQMICDLNEGYAIYRPRYILPDYNVYMQKGCQFLDLPPPTNLDEALDGLLI
                     LYSHVPSITTFPVYIGRLDQLLEPFITDEEQDYIKIKRFLNHIDKTISDSFCHANIGP
                     NDTKAGRLILKAVIELENITPNMTIRYDKTKTSREFAELAAKACLLVSKPSFANDAYY
                     IQDLGEEYGIASCYNALPECGGAYTLTRLRLGTIGRACASVEQMVNEMLPKVAKLALS
                     TMDKRHKFLVEESNFFESSFLVQEGFIKRTNFTSMIAIVGLADAVNHLLKQEGLNETF
                     GQSKRGDEIATLIMDKLQAVNDAHKGLYVERTNNQYLLHAQVGANNHAEDKMNTPAHR
                     IRVGEEPTLLAHLKQSAPFHKYFPSGTGDLFAFDQTYTDHLDAVVDIIDGSFAQGYRY
                     ITTYLKNTDLIRVTGYLVKKSEVERYRKGEAVLRDTTWYGSGTDDCAKVFDRQLRDEE
                     NVNAG"
     gene            8310..9098
                     /locus_tag="PXE92_000653"
     CDS             8310..9098
                     /locus_tag="PXE92_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HDL5759928.1"
                     /translation="MAALSEIFVPLHRIIPFSNVEGQGNRTSIFLQGCKLNCLYCHNP
                     ETIPRYSKEAKQVSLQYLYDQVMEAVPFIRGVTISGGEPTIHHKKLVPLFEALREQGL
                     TCYLDSSGFFDFEATEPLINVTDKFLFDLKGDGAGLQTLCFDRKNQAGKVPEQALPNV
                     NHIKPENLARNLQNLAKLLPLDKVEEVRLVYLNEFYNAHHLLEKVADLLKPYPDVLLK
                     IIRVHTKGARDETGLARFVPTIEQTDELAAFAKRHGIQKVITIY"
     gene            9111..10368
                     /locus_tag="PXE92_000654"
                     /pseudo
     CDS             9111..10368
                     /locus_tag="PXE92_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005760733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
     gene            complement(10447..12456)
                     /locus_tag="PXE92_000655"
     CDS             complement(10447..12456)
                     /locus_tag="PXE92_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5759929.1"
                     /translation="MSAENMPSVIRFEQAVAKKDYESACTELLSILSKLDSNFGGISN
                     IELNMPEQIENLENDKAIYFCTRMAVAITRLFEDPALEISEHGAMRFLTLQRWIALIF
                     ASSPYVNADHILRTYNRNKESANPNTVDLDATLQALIKFCILYLPESNILLNLDAAWN
                     ASSDLTASLCFALQSPRFIGTSSAFAKRAAILQWFPEKLAQIENLNKLPSAISHDVYM
                     HCSYDIEANKHNVKRSLNAVIRRHLLSVGWEDRKIEQLGTRNNKPVMVVLLEHFHSSH
                     SIYRTHSTSMVAAREHFHLIGLGSDAVDEMGQQVFDEFHLLPQDGSLFDRLSFLKDIC
                     DKNNPAVFYMPSIGMDLTTIFASNTRLAPIQAVALGHPATTHSDFIEYVIVEDDYVGS
                     ESCFSEQLLRLPKDALPYVPSALAPQNVVYNLRENPEVIHIGIASTTMKLNPYFLEAL
                     KAIRDRAKVKTHFHFALGQSSGITHPYVERFIKSYLGNDATAHPHSPYDEYLNILHNC
                     DMMLNPFPFGNTNGIIDMVTLGLVGVCKTGPEVHEHIDEGLFKRLGLPNWLITQTAEE
                     YVTQAIRLAENHEERLAIRRDIIENNKLQTLFSGDPRPMGQIFLAKVQAWLADKNSKN
                     AEVEVKTKKVRKAATASQSAKKQTTSKTQTAKAEKDNTAKTETKS"
     gene            complement(12466..13803)
                     /gene="rimO"
                     /locus_tag="PXE92_000656"
     CDS             complement(12466..13803)
                     /gene="rimO"
                     /locus_tag="PXE92_000656"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HDL5759930.1"
                     /translation="MSASPNIGFISLGCPKNLVDSERILTELRADGYNIIPSYENADL
                     VIVNTCGFIDSAVQESLESIGEALEANGKVIVTGCLGAKENQIREVHPKVLEITGPHS
                     YEAVMNHVHKYVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMR
                     GDLASRSIVQVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEATKTVFWNGMPIKS
                     NLITLCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAAGKILPYLDIPLQHASPKILKAM
                     KRPGSIERTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGC
                     FKFSPVEGAVATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDID
                     EEGIIGRSMADAPEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGILNN"
     gene            complement(13958..14650)
                     /gene="mtnN"
                     /locus_tag="PXE92_000657"
     CDS             complement(13958..14650)
                     /gene="mtnN"
                     /locus_tag="PXE92_000657"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HDL5759931.1"
                     /translation="MKIGIIGAMAQEIEILRQVMVEPKVTELAGCKIFEGKINNTRVA
                     LLQSGIGKVAAAIGTTLLIQLTQPDMIINTGSAGGLDPDLNVGDILISTEVRYHDVDV
                     TAFGYEIGQLPANPPTFSPNEQLVELAQKEAKKAGYNVVSGLICSGDAFINGNDKINQ
                     IRQNFPNVVAVEMEAAAIAQVCHGFNLPFVIVRAVSDVADKESHLSFEEFLPLAAEKS
                     STIVLAMLNNID"
     gene            complement(14708..14929)
                     /locus_tag="PXE92_000658"
     CDS             complement(14708..14929)
                     /locus_tag="PXE92_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HDL5759932.1"
                     /translation="MDNNYTLSAKITELETKVAFQELIIEELNQALIEQQFAIDKLQT
                     QIRHIAEKLKGAQLSQVASQAEETPPPHY"
     gene            15017..15742
                     /gene="fkpA"
                     /locus_tag="PXE92_000659"
     CDS             15017..15742
                     /gene="fkpA"
                     /locus_tag="PXE92_000659"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5759933.1"
                     /translation="MLKTKLSLFTLIVGTLFSTNVMAEEKADPKFVDDSSYAVGVLMG
                     KNINGVIESQKDIFTYNQDKILAGVQDTLKKTGKLTDEDLQKQLKSLDAYLSAKEAKI
                     NEEKTKATVAAGDKFRADYKKQSGVKETASGLLYKIEKAGEGNSPKAEDTVKVHYKGT
                     LTDGTVFDSSYDRGEPIEFQLNQLIPGWIEAIPMLKKGGKMEIVVPPALAYGDRAAGK
                     IPANSTLKFEIELLDFKAADAKK"
     gene            15839..16495
                     /locus_tag="PXE92_000660"
     CDS             15839..16495
                     /locus_tag="PXE92_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5759934.1"
                     /translation="MTKKFTPFSDEDHAILASYFPMVDGIAALIGEHCEIVLHSLEFL
                     EHSAIYIANGHNTNRKIGSPITDRALKSLHHMATDSVSKPYFTKAKGGVLMKSITIAI
                     RNGKQHVIGLLCININLEVPTSQFLNSFIAPVDTASEVTFASSVEDLVSQTIQTTIDD
                     VMADRQISNNNKNRQIVISLFEKGIFDIKDSINQVAEKLDISRHTVYLYIRQIKQDND
                     "
     gene            16495..16872
                     /gene="tusD"
                     /locus_tag="PXE92_000661"
     CDS             16495..16872
                     /gene="tusD"
                     /locus_tag="PXE92_000661"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HDL5759935.1"
                     /translation="MDYVLAIKSPVYGSQGAFLAYQVAEELLKANHTICQIFFFQEGV
                     SNANALVNPASDEVNLVEMWKKLAKLHRLPLHLCIAAAQRRGVVDEQISANATHNLAE
                     GFTLAGLGEFSQAVLKADRLLTF"
     gene            16874..17245
                     /gene="tusC"
                     /locus_tag="PXE92_000662"
     CDS             16874..17245
                     /gene="tusC"
                     /locus_tag="PXE92_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HDL5759936.1"
                     /translation="MKKYKLAFLFTQPPFGSAVSREGLDALLAASAFCDEQEIAILFI
                     NDGVFNLIADQQPEKLLQKDHISTFKLLELYDLTECFICQESVSLRGLDNADWLLRML
                     QFKTHAEMIALLNQAEKVMTF"
     gene            17255..17530
                     /gene="tusB"
                     /locus_tag="PXE92_000663"
     CDS             17255..17530
                     /gene="tusB"
                     /locus_tag="PXE92_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HDL5759937.1"
                     /translation="MLYTLSKANYDEETLNFFFSHLSENDAVVLWQDGVLQAVKSPQF
                     FAKLPRCYLLAQDVQARGLQEKLTAFQCISLSELVKLTAVYFPQVAL"
     gene            17646..18545
                     /locus_tag="PXE92_000664"
     CDS             17646..18545
                     /locus_tag="PXE92_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759938.1"
                     /translation="MVMAEENNTWVDKKHETVSTTLDRWANNINSWLGDADPDKPGTA
                     SLRVMLDSRWDKHDKFTYKPRVRGKIKLPILKKHLNVVFGDDELDNELTDKNHAGKLY
                     KNVNPNKRYNSREARDSNSSIGLRWSDGIKALGIETDLDAGIRSGSDIFGRLRISKDW
                     KITDQFSTRLEQIYRYGSESKHYLRTNFENKYTETDTTFIMNHTNFEYRHDVDEERSW
                     GNSLYRQHNFKPLTHISYGISMGGRLDKELSKFNYWGPFVSYRQPIWRNWLFIQPEIS
                     FYNDKDKDRKHFIQTFVRLEAIF"
     gene            18895..22920
                     /gene="rpoB"
                     /locus_tag="PXE92_000665"
     CDS             18895..22920
                     /gene="rpoB"
                     /locus_tag="PXE92_000665"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDL5759939.1"
                     /translation="MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIEKDPE
                     GQQGLEAAFRSVFPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRL
                     VSYDREAAAGTVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTE
                     EILNLFFEKIKFEIADNKLLMTLVPERLRGETASFDIAANGKVYVEMGRRITARHIRA
                     LEKDNVTQIEVPVEYIVGKVAAQDYVDLSSGEVICPANMEISMEMLANLSQAGYNQIE
                     VLFTNDLDHGPYISETLRVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSA
                     ERYDLSAVGRMKFNRSLEIPEGVGSGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGN
                     RRIRSVGEMAENQFRIGLVRVERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEG
                     PNIGLINSLSVYARTNNYGFLETPFRKVVNGQVTEEIEYLSAIEESNNIIAQANSNLD
                     ENFRFTDTYVTCRQQGESGLFKPEEVQYMDISTQQVVSVAAALIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAKRGGTVQYVDASRIVVKVNEDE
                     TIPGEAGIDIYNLIKYTRSNQNTCINQVPCVNLGEPVARGEILADGPSTDLGELALGQ
                     NIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVARDTKLGAEEITADIPN
                     VGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEEMQLCEAKKDLAEELEILEAGLF
                     TRVRNLLIEGGVKESALDGVAREKWLEQTLEDEAKQNQLEQLAEQHEELRKEFERKLE
                     IKRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYD
                     ENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAHGIGDQIDKMIKQQQEVAKLREYMQ
                     KAYDLGHGSQVVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLELGGLP
                     TSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA
                     QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIPE
                     SFNVITKEIRALAIDMELDEA"
     gene            23183..27466
                     /gene="rpoC"
                     /locus_tag="PXE92_000666"
     CDS             23183..27466
                     /gene="rpoC"
                     /locus_tag="PXE92_000666"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDL5759940.1"
                     /translation="MKDLVKFLKAQTKSNEDFDVIKIGLASPDKIRSWSFGEVKKPET
                     INYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRER
                     MGHIELACPVAHIWFLKSLPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQL
                     LTEEQFMDAEERWGDEFEAKMGAEGIQALLRDLDLEHQCETLREELQETNSETKRKKI
                     TKRLKTLEAFLQSGNKPEWMVMTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR
                     NNRLKRLLDLVAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKG
                     KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFRPFIYSKLENRGIA
                     STIKAAKKMVEREDPIVWDILAEVIREHPILLNRAPTLHRLGIQAFEPLLIEGKAIQL
                     HPLVCAAFNADFDGDQMAVHVPLTLEAQLEARALMMSTNNVLSPASGDPIIVPSQDVV
                     LGLYYMTREKVNGKGEGMYFLDPREAEKAYRTGQAELHSRVKVRVTEYEKNEAGELEA
                     KTSLVDTTIGRSILWMIAPKGMPFSLFNQTLGKKAISKLINESYRRLGLKESVVLADQ
                     IMYTGFAYAARSGASVGIDDMVIPEQKYAIIEAAEAEVAEIQEQFNGGLVTAGERYNK
                     VIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASFNSIFMMADSGARGSAAQIRQ
                     LAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT
                     RRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRVLGRVVAEDVLKPGTDE
                     VLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCDTDFGVCAKCYGRDLARGHLINQGE
                     AVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIKLTNAKFVTNKEG
                     KIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKHDGAEVAVGEVVANWDPHTMPVIS
                     EVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALRLVDSNGKD
                     ILIPGTDVAAQYFLPGKAIVTLDDGAEIEVGEALARIPQESVGTKDITGGLPRVADLF
                     EARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFEGEMV
                     QRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQMLR
                     KAVITNAYDSEFLEGEQVEVARVKIANRKRAEEGKPLVEFERELLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQARAKKRAQLEA
                     GIAVVPEFEAPAAKANSFVTDADIEAEFEFVADDATQSLAALLNAGEEE"
BASE COUNT         8283 a         5595 c         6306 g         7898 t
ORIGIN      
        1 agaattatct cgtagaatat taaaaagttt agaacaaaaa aatattctca cttggcacgg
       61 cttaagtcca aaagatccaa cccaatacta cacactcaag aaatagtagg aaatataaga
      121 tgaataatac agttctcatc accggctcaa gccgtggtat cggtaaagcg attgctttaa
      181 cccttgcaca acaagggttt gatattgtgg tacattgccg ttctcgtgtg gaagaagcgg
      241 aagcggtggc acaagcggtc agaaatctcg gaaaaaatgc cagagtgtta cagtttgatg
      301 tggcggatcg tgaaaaagtg cggtcgattt tagaggcaga tgtggaacaa catggtgcct
      361 attacggcgt ggtgctaaat gcagggctta cccgtgataa cgcctttcct gctttaaccg
      421 atgaggattg ggatagcgtg ttgcgtacca atttagacgg tttttataat gtcctgcacc
      481 cgattatgat gccgatgatc cgtcgccgta aagcaggcag gattgtctgt atcacctcgg
      541 tttccggctt gatcggcaac cgtgggcagg tcaattacag cgcttcaaaa gccggcatta
      601 ttggtgcggc aaaagcactc gccatcgagc ttgccaaacg taaaatcacg gtaaactgcg
      661 tggcgcccgg cttgattgat accgatattc tggacgaaaa cgtcccaatc gaagaaattc
      721 tcaaaatgat ccccgcagga cgaatgggcg atcctgatga agtggcacac gccgttgcgt
      781 ttttaatgga tgaaaaagcc acttacatca cacgccaagt catcgctgtg aatggtgggt
      841 tgtgttaact ttaggataat aattcgtagg ggcggatcca gtacccgccc gaagccaaaa
      901 agagataaat atgaaacgag tcgtcatcac cggaattggt gtggttaccg cttttggtaa
      961 agagtgggcg gaaattcacg gctatcaacc gccgaaacat tggaaccgca agcagttgcg
     1021 cagccttggg cgagtgtcgc aatttgtggt ggaggccagc gagcgggctt tagcacaggc
     1081 cggtttgttg gacgaaaacg gcgtgatttt cgactggcta aaagacaggc gaatgggcgt
     1141 ggcgtgtggc tcgtccacag gctctaccaa tgacatcaaa gatgccgccg aattgctgat
     1201 gaccggcaaa tcggacggtt tcaatgccaa cacctatgtg cgaatgatgc cccacaccac
     1261 cgctgccaat attggcattt tcttcgggct gacagggcgg attatcccga cttccagcgc
     1321 ttgctcctcg ggcagccaag gtatcggtta cgcttacgaa gccattaaat acggtatgat
     1381 cccgatgatg cttgccggcg gtggagaaga attttgtgcc tccaaagtct atgtcttcga
     1441 cagcctctat gctgccagcc gccgcaacga caacccaaaa ggcacgccac gcccctatga
     1501 caaagaccga gacggcttag tgatcggcga gggagcggga atgttcgtat tggaagagct
     1561 ggaacacgcg ttagcacgag gggcaaacat tatcgccgaa gtggtgggct acggtgcaaa
     1621 cagtgacggt tcccacgtca cccgcccaca agccaccaca atgcaacgct gtatggaact
     1681 tgcccttaaa gatgccggta ttcaaccgaa ccaagtcggc tatgtaaacg gacacggcac
     1741 ggccaccgag cagggcgaca ttgccgaaac tcaagccacc acagcggtgt tcggcaaaat
     1801 tccgctcagc tcgcaaaaaa gctacttagg gcatacgctc ggtgcgtgtg gtgcattgga
     1861 aagctggttc agcattgaaa tgatgcgaga cggctggttc gccccaacac tgaatttaga
     1921 aaatgtcgat gaacgctgtg gcgacttgga ttaccttcaa ggtgacggac gggaaatcca
     1981 caccgattat gtgatgaaca acaatttcgc cttcggcggt gtgaatacct cattgatttt
     2041 taaacgttgg aaataaccgt tttcaaataa tgaaaaagat attattagtt tattactccc
     2101 aaaccgggca actcacccat ttggcagaaa attttgtaca atcgcttgaa caagcgggcg
     2161 tttttgtgga aaaactcgca atcaaaccgc aacaggaata cccgtttccg tggcggttta
     2221 tgcgtttttt taacaccttc cccgaaaccg tccacctcac accgccgccg attgagcctc
     2281 tgccctttca gcacgaaata tacgatttgg tgatcatcgc ctattccgtg tggtttctct
     2341 cccccagcca gccgattacc gcttttttac agagtgaaca ggcaaaaaag tgttgaagga
     2401 tacgcccgtc atcacgctga tcggctgtcg caatatgtgg ctgatggcgc aggaaaaagt
     2461 gaaaaaactg cttgccgaga gtgaggcgaa gctcattggc aacgtggtca aagtggatca
     2521 atctaacgac tgggcgagtt ttatcaccac accgctttgg atgctgaccg gcaagaaaaa
     2581 aaatcggcaa gctgccgagc gctggcattg ccgaaagcga aatggaagat gtaaaacgct
     2641 tcggggcaaa acttttgcac atttttagcc aaaaccaacc gcttgacagc acccttttcc
     2701 gccaaatgca agcggtcaaa attgacgaaa aattgatgat gagcgaaaaa gtcggtgcga
     2761 gaagtttcca cctttggggc aaattactga tcaagtgcgg tcaaatttca ccgcacttac
     2821 gccaagcggt actctatttt tacatcctct ttttagtgac gttaatttta accgtcgtcc
     2881 cgatttcaac ggtgattaaa cggctattac gcccactgct gaaagaaaaa ttagaaaaac
     2941 aaaaacggta ttttgccgag ccttcgggcg agtaaacgta ccctacacgg aaactttatg
     3001 ctatctaacg tctatatcac caacacctcc gcctttttac ccaacgcccc tgtgtccaac
     3061 gatgcaatgg aagcggtgtt gggaatggtg ggggaaacgc cttcccgagt gcggaagatg
     3121 attttgcgtt ctaacggtat tcaacatcgt tattatgcca ttgacccgat aacccgccaa
     3181 gcgactcaca gcagtaccga gttggcggtg caagcggtca aaaaattggg aaattctgca
     3241 acatcagcga cttgcttggc ggtggggaca tcttaccccg accaaattat gccggggcag
     3301 ggggtgatgg tacacggctt gcttgatgcc gaaccgatgg aagtgctgac cactgccggt
     3361 gtgtgcgtgg cgggaatggc agcgatgaag cacgcctata atgccgtacg catcggtgag
     3421 catcgtgctg cgattgcaac ggcttccgaa accgcctccg ccattatgcg cagtgaacat
     3481 ttccgtgccg aaatcgatca taaaaaactg gacgatgctc gccctgagat cggttttgag
     3541 aaagatttcc tgcgttggat gctctcagac ggtgcagggg cggtattgct tgccaatcag
     3601 ccgaacgaaa aagggttgag cctcaaaatt cactggatcg atctggtctc ttacgctaac
     3661 gaaatgccgg tttgtatgta cgccggtgcg gaatttattg acggcaacta caccggctgg
     3721 aaagcaatga gcgaagccca acgtgccgaa tgctcggcaa tggcggtgaa acaagatgtc
     3781 aaactgctca acgaaaacat cgtcaaatac acggtggaaa aagcattgga gcggattatc
     3841 ccgaaataca agctcaacgc tgaagagatt gactacttcc tgccgcacta ctcgtccggt
     3901 tccttccgag ataaattatt ggaaggttta cagcggatca atttcctgat cccacaggaa
     3961 aaatggttca ccaacctgac taccaaaggc aacactgggt cagcctcgat ctacattatg
     4021 ctcgatgaat ttatccgcac ccacgatctc aaacagggac aaaaaatcct ctgctatgtg
     4081 ccggaaagcg gacgtttttc gtcttgtttt atgcttttgg aagcggtggt aaattcgtaa
     4141 aatcgtaggg acgggggcta ttcccgtcca acaatcatcg gaaaacgtat ggacatcaat
     4201 gacattcccc aagacaacag caaaatcttc aacggcgaac gcaaagtgat ctacgcccgc
     4261 aatccgcaac cagaaatccg ccaaatgatc tcctctattc tcgcttgcta cgcttgggac
     4321 gaaaacaacc cgtttgtagc gaagtctgat gcacggttga aggcattggc ggaagttgtt
     4381 ggtaaagcag aaattggcga ttaagtttga ttttgtgctt tacagggtcg cagattatct
     4441 gtataatttg cgaccttaac ttgcgagagc aagctgatgg tgcttagcct atctaagccc
     4501 cgtctaagac tgtaggggtg aaaacttaat aatcctacat agatggtgaa cagacagaat
     4561 tctctgcttc tggacacctt aggctcaaag aagattgcag tttgtagcaa tgcaagcggt
     4621 aatatttttg ggattttttg taaattctgc ttgaaaaggc agagtgtatc aggagctaaa
     4681 accaatggca ttaaatcttc aagacaaaca agcgattgtt gctgaagtaa acgaagctgc
     4741 caaaggtgca ctttcagctg ttgttgcgga ttctcgcggt gtaacagttg aaaaaatgac
     4801 tgagttacgt aaagcagctc gtgaagctgg tgtgacaatg caagttgtac gtaatacttt
     4861 attacgtcgt gcagtggaag gcaccgagtt cgagtgctta acagatacgt ttaccggtcc
     4921 aactcttatc gcattctcaa atgaacaccc aggtgcagca gcacgtttat tcactgaatt
     4981 tgcgaaaaca aacaaagagt ttgaacttaa aggtgcagcc tttgaaggta aaaaacaaga
     5041 tgttgcattc ttagcaacct taccaactta cgaagaagca attgcacgtt taatgggcac
     5101 aatgaaagaa gctgcggcag gcaaacttgt tcgcactctt gcagcattac gcgatcaaat
     5161 ggaagcagca gcttaatttt aagcactctt ctttattcgt ttaacaactt attttacttt
     5221 aggaatcgat tgttatgtca ttaactaacg aacaaatcat tgaagcgatt gcttctaaat
     5281 cagtatcaga aatcgttgaa ttaatcactg cgatggaaga aaaattcggt gtttcagcag
     5341 cggcagcagt agcagcagct ccagcagcag gcgcagcggc agcagaagag aaaactgagt
     5401 ttgatgtagt attagcagaa gctggtgcaa acaaagttgc tgtaatcaaa gcagtacgtg
     5461 gtgcaacagg tttaggctta aaagaagcta aagacttagt agaatcagct ccagctgcat
     5521 taaaagaagg catctctaaa gcagaagctg aagcacttaa gaaagaatta gaagaagctg
     5581 gcgcgaaagt agaaatcaaa taatttttga tttattttgt cagaacttca agttcaacaa
     5641 accccgatgg aaacatcggg gttttgtttt ttcagaattg tgtaatgtag atatgattac
     5701 ctttatccat tacttgcgca gcagtgaaaa atgtaaaaat tccacaaagt gatctgccca
     5761 gtgcatttcg tggtggattt catttgccat aatccgcagg cggatattgt ctaacggcac
     5821 gccaatccga atcagtgctt ggtagtaatt gagcgaacaa tcaatatagg tttggttcgt
     5881 attagagata aagtgcgaat cgatttcatc gccttcgtta gtgccaacct gaataaacac
     5941 tttggtattg ggttgtaacg gatattggtg cgtaaaacgc agaaaatccg gctcactaaa
     6001 ccaagaggca agcgaaaaca cccctaaatg cccgaaaata tgtgggtagc ggctgcccat
     6061 ataagcggtg ataatgccac ccattgaact gcctgccaat aaggtatgtt cttgctgagg
     6121 cttggtgcga tagtgaatat caataaaggg tttaaccgtt tccaccaccc atttggcata
     6181 ttcctcccct aagcctccgg catttcgggt ttcaggggtt gagccggtgg ttgttttcca
     6241 cgggccgtat tcatttaagc gattagctcc tgcgttatca atgccgacaa taatcatctt
     6301 cggtaattct tggtgtgatt taatggttgg aataattttc caagaatgcc ccgaataaga
     6361 ctctttgctg taaaacacat tttgcccgtc gtgcatatat aacaccggat aacgttccca
     6421 accttcgttg tgataatcct tcggcaatag tacccgaatg cggcggtgat ggtgtaaata
     6481 gggaacatat aaaaaatgct cctgcatttc taaatagtgg ttaagtggtt tttgtaccat
     6541 cagtctgtcc ttttgcttaa attgtggcgt attttacacc ttaatcagtc tgagttaaaa
     6601 caagcggtca gaaaaagtca aaaatttgca aattgctgtt acctaacgca atcggttgcc
     6661 ttatgctttt gaggaatata aaagagaaac tgtgatctaa gtcacagcaa tttttattcg
     6721 gtttgactaa aatccgaact atcacttaat agagaggaaa atgttatgca ggcttcatta
     6781 caagatattc ttgaggtagt aaaagcaaaa aatctcactt atcagcaaaa attgatgagt
     6841 ttaggcaata ttgctgagcg gttatttaac ccgattgaac tacttggcta cactgaagaa
     6901 gagtgggaac acattgaaaa tcagatgatt tgcgatttaa atgaaggtta tgcgatttat
     6961 cgcccacgtt atattttgcc tgattataat gtgtatatgc aaaaaggttg ccaattctta
     7021 gatttacctc cgccaaccaa tttagatgaa gccttagacg gcttgttaat tctgtattca
     7081 cacgttccgt ccattactac ttttccggtg tatatcgggc gtttagacca actgttagaa
     7141 ccgtttataa ccgatgaaga gcaagattac attaaaatca agcgtttctt aaatcatatc
     7201 gataaaacca tttccgattc tttctgccac gctaacatcg ggccgaatga caccaaagcc
     7261 ggtcgtttaa tcttaaaagc ggtgattgag cttgaaaaca ttacaccgaa tatgacgatt
     7321 cgttatgata aaaccaaaac atcgcgtgaa tttgccgaac tggcggcgaa agcgtgcttg
     7381 ttggtgtcca aaccgtcttt tgctaatgat gcctactaca ttcaagattt aggcgaagaa
     7441 tacggaattg caagctgtta taacgcctta ccggaatgtg gcggtgctta cactctgacc
     7501 cgcctgcgtt taggtactat cgggcgtgct tgtgcgagtg ttgaacaaat ggtcaatgag
     7561 atgctgccga aagtggcaaa actcgccctt tccacgatgg ataaacggca taaattcttg
     7621 gtggaagaaa gcaatttctt tgaaagtagc ttcttggttc aggagggctt tatcaaacgt
     7681 actaacttca caagtatgat tgcgattgta ggtcttgctg atgcggtgaa tcatttactc
     7741 aagcaagaag gtttaaatga aacctttggg caaagcaaac gtggcgatga aattgcgacg
     7801 ctgattatgg ataagctcca agcagtaaat gacgctcata aagggctgta tgttgaacga
     7861 accaataacc aatatctgtt acacgctcaa gtgggggcaa ataaccacgc tgaagacaaa
     7921 atgaacacgc cggcacaccg cattcgtgtg ggcgaagagc caaccttatt ggcacactta
     7981 aaacagtctg ctcctttcca taaatatttc ccatccggta cgggggattt attcgccttt
     8041 gaccaaacct acactgatca tttagatgcg gtggtggata ttattgacgg ctcgttcgcc
     8101 caaggttatc gctacattac cacttacctg aaaaatactg atttgattcg agtgacaggc
     8161 tacttggtga aaaaaagcga ggttgaacgt tatcgcaaag gcgaagcggt attgcgtgat
     8221 accacttggt atggttcagg caccgatgat tgtgcgaaag tgttcgaccg ccagctgcgt
     8281 gatgaagaaa atgtgaatgc agggtaacaa tggctgcact ttctgagatt tttgtgccgt
     8341 tacaccgcat tatccccttc tcgaatgtag aagggcaggg caatcgtacc agcatttttc
     8401 tacaaggttg caagctgaat tgcctgtatt gccataaccc ggaaaccatt ccacgttata
     8461 gcaaggaagc aaaacaggtt agcttgcaat acttgtacga tcaagtgatg gaggcagttc
     8521 cctttattcg aggagtcact atttcgggtg gagagccaac cattcatcat aaaaaattag
     8581 tgccactgtt cgaggcgttg cgtgagcaag ggctaacctg ttatttagac agcagcggct
     8641 tttttgattt tgaggcaaca gagccgttaa ttaatgttac cgataaattt ctgttcgatc
     8701 tcaaaggaga tggggcgggc ttacaaacgc tatgctttga tcggaaaaac caagccggca
     8761 aagtgcctga acaggctctt ccaaacgtga atcatattaa acctgaaaac ttggctcgca
     8821 atttgcaaaa tttagccaaa ttattaccgc ttgataaggt ggaagaagta cgtttggttt
     8881 acctcaatga gttttataac gcccaccatt tgctcgaaaa agtggctgac ctacttaaac
     8941 cttacccaga tgtactactt aaaattattc gggtacacac caaaggagcg agagatgaaa
     9001 caggcttggc tcgttttgta cccactatcg agcaaaccga tgaactggca gcatttgcaa
     9061 aacggcacgg tattcaaaaa gttattacta tttactaatg gagacttacg atggatatac
     9121 taattagcat aattggtgtt tttgtgttat taggcttagg tgttttatta tcaaataatc
     9181 gcaaagccat taaatttcgc acaattttgg gcgctttggc gattcaaatt ggttttgccg
     9241 ctcttattct ttactttcca gcgggaagaa atgcattgct agctactgca aattgtgtga
     9301 gcaatattat taattatggt aacgaaggta ttagctttgt gtttggcaat ttagcgaatc
     9361 cgagtaatag cagcattggt tttgtgtttg cggttaaagt attgcctatt attatcttct
     9421 tctctgcgtt aatttcaatg ctttactacc ttggtgtgat gcaatgggtg attaaaatta
     9481 ttggtggagc attacaaaaa acactaggca cttccaaggc agaatcaatg tcagcggcag
     9541 ctaattattt ttgttggtca gacagaagct cctctagttg taaaaccata cattagccgt
     9601 atgacagagt cagaattatt tgccattatg gttggtggaa ctgcttcaat tgctggttcc
     9661 gttatggctg gttatgccgg aatgggcgtt cctttaactt atcttattgc ggcctccttt
     9721 atggctgcac cagctgggtt actatttgct aaattaatgt atcctcaaac ggaaaccttg
     9781 gagagtaaag cagatgacaa tgttgaagtt gaaaagccaa ataacgtggt tgaggcccta
     9841 gctaatggtg ctagtgcagg tgttactttg gctattaatg tcggtgctat gttaatagca
     9901 tttattgcag tgatcgcttt attaaatggc tttattggtg gcattggtaa ttggtttggt
     9961 tatgaggggc taaccttaca aattttatta ggttatttat tccaaccact tgctttctta
    10021 atcggtgtgc cgtggcaaga tgccgatatt gcaggtcaaa tgataggtat gaaacttgct
    10081 gttaatgaat ttgtcggata tcttgagttt gctaaatatc tacagcctga tgctgtggtg
    10141 caattaagcg ataaaactaa ggcaataatt acttttgctt tatgtggttt tgcaaacttt
    10201 agagcaattg cggtattgat tagtggtatc ggaagtatgg caccaagtcg gcgttcagat
    10261 attgctcgtt taggtttaaa agcagtgatt ggcggcacat tggcgaactt aatgagtgca
    10321 actatagcgg gtttctttat tggtttaagt ggtgccacat taggttgata caagcggtta
    10381 aattgactca cttttttgca aaaagcccaa gtaagttaaa tgactacttg ggctttgttt
    10441 aatgaactag ctcttagttt cggtttttgc tgtgttatcc ttttccgctt tggctgtctg
    10501 tgttttcgaa gttgtctgtt tttttgcgga ttggctagca gtagctgctt ttcttacttt
    10561 ctttgtttta acttctactt ccgcattttt agagttttta tccgctaacc atgcctgcac
    10621 tttagctaag aatatttgtc ccatcgggcg aggatcgcca gaaaataatg tttgtaattt
    10681 attattttca ataatgtcgc gtctaattgc taagcgttct tcgtggtttt ccgctaaacg
    10741 aatagcttga gtaacgtatt cctctgctgt ttgggtaatt aaccaattag gtagcccgag
    10801 gcgcttaaat aaaccttcat caatatgttc atgaacttca gggcctgttt tacagacacc
    10861 aactaaacca agcgtaacca tatcgataat gccgtttgta tttccaaatg ggaatggatt
    10921 tagcatcata tcgcaattat gtagaatatt tagatattca tcatatggcg aatgtgggtg
    10981 tgcggttgca tcatttccta aatagctttt gataaaacgt tccacataag gatgcgtaat
    11041 tccactagat tgccctaatg caaaatggaa atgagttttt accttcgccc tatcacgaat
    11101 ggcttttaat gcctctaaga aatatgggtt taatttcata gtggttgatg caattccgat
    11161 atggataacc tctggatttt cacgtaggtt atagaccaca ttttgaggcg ctaatgcgga
    11221 aggcacatag ggtagcgcat cttttggaag acgtaataat tgttcactaa agcagctttc
    11281 ggaaccaaca tagtcatctt ctacgatgac atattcaata aaatcagagt gtgtagttgc
    11341 cggatgacct agcgcaacag cttgaattgg tgctaggcga gtgttactag cgaaaatagt
    11401 ggttaaatcc attccaatgc taggcatata gaatacggct ggattatttt tatcacagat
    11461 atcttttaaa aagcttaagc ggtcaaatag tgagccatct tgtggtaata aatgaaattc
    11521 gtcgaatacc tgttgcccca tttcatctac agcatcactg cctagcccaa taagatggaa
    11581 atgttcgcgt gcagcaacca ttgaggttga atgagtacga taaatagaat gtgatgaatg
    11641 gaaatgctcc aataatacta ccatgacagg tttattattt ctggtaccaa gctgttcaat
    11701 ttttctatct tcccaaccga cagaaagtaa atgacgacga attacagcat ttaacgaccg
    11761 ttttacatta tgtttatttg cttcaatatc ataactgcaa tgcatataaa catcgtgtga
    11821 aatggcgctc ggtagcttgt tcaagttttc aatttgcgct aatttttctg ggaaccattg
    11881 caaaatagcc gcgcgttttg caaaagcaga ggatgtacca ataaatctag gtgattggag
    11941 tgcaaaacaa agtgatgcgg tgagatctga tgaagcattc catgcagcat ctagattcaa
    12001 taaaatatta gattccggta agtataaaat acagaactta attagtgctt gtaatgtggc
    12061 atctaaatca accgtatttg gattagcaga ttctttattt ctattgtaag tacgcaagat
    12121 atggtctgcg tttacgtatg gagaactggc aaaaattaat gctatccagc gttgtaatgt
    12181 cagaaaacgc atagcaccgt gttcggagat ctctaatgca ggatcttcaa acaagcgagt
    12241 aatcgctacc gccattcgag tacagaaata gatagcttta tcattttcta aattttcaat
    12301 ctgctctggc atattcaatt caatattgga aatgccacca aaattactat ctaattttga
    12361 aaggatagac agtagctcgg tacaagccga ttcataatct tttttcgcga ccgcctgctc
    12421 aaaacggatg acgctaggca tattttctgc tgacataatg tatccttagt tgtttaaaat
    12481 tccccacaga tcatactcat ctgcatgtgt aatggttact gaaataattt gccctactgt
    12541 cactaattgg tttgaaggat tatctacata gactacaccg tcaatttccg gtgcatctgc
    12601 cattgagcga ccgataatgc cttcttcgtc aatgtcatca ataattactt gtacggtttt
    12661 gccgattttt gcttgtaagc gagcagcgga aatttcttgt tgtagttgca taaaacggtg
    12721 gaaacgttcc tcttttactt cttccggaac ttgatccggc atatcggtag caacagcacc
    12781 ttccactggg ctgaatttaa agcaaccaac acgatctaat tgtgcttctt ttaagaaatc
    12841 gagtaatagt tggaaatctt cttctgtttc ccctgggaag ccgacaataa aggtagaacg
    12901 cagagttaat tcagggcaaa tttcacgcca ttttttaatg cgttctaagg ttctttcgat
    12961 tgaacccggg cgtttcatcg cttttaagat tttcgggctg gcgtgttgga gtggaatatc
    13021 caaatacggc aaaattttgc cggcagccat aagcggaatt aaatcatcta cgtgtgggta
    13081 tgggtaaaca tagtgcaaac gcacccacac gcccattgag cctaattgct cacatagcgt
    13141 aattaaatta cttttaatcg gcataccgtt ccagaaaacg gttttggttg cttcttcttt
    13201 tttgcgatct aacgaatagg ctgaggtgtc ttgtgagacg attaacagct cttttacccc
    13261 ggcatcaact aggcgttttg cttcatctaa tacttgcacg atagaacggc ttgctaaatc
    13321 gccacgcatt gaaggaataa tgcagaaagt gcagcgatga tcgcagcctt cggaaatttt
    13381 caaataagcg taatgcttcg gtgttaattt aatcccttgt tttggcacta agctggtgta
    13441 agggttaaat tccggttttg gcacatattt atggacgtgg ttcattaccg cctcatagct
    13501 atgtggccct gtaatttcca atactttagg gtgtacctca cgaatttggt tttcttttgc
    13561 ccctaaacag ccggtgacaa ttacttttcc gttagcttct aacgcttcac caatgctttc
    13621 aagagattct tgtactgcgg aatcaataaa accgcaggtg tttacaatca caagatccgc
    13681 attttcataa ctagggatga tgttataacc atccgcacgc agttcggtca aaatacgttc
    13741 ggaatcaact aaatttttag ggcagcctaa gctgataaaa ccaatatttg gtgaagcact
    13801 catataactc tcaataacta aaaagaaaaa tgcctacaat ttttgtctgt aggcaaaaaa
    13861 ctaacaagat tctacaaaat cttgcccaaa atagcgataa caagcggtca atttttaata
    13921 aacatttaca aacttgaaat ttcgctaaca attaaaatta atcgatatta tttagcattg
    13981 ctaatacaat cgtggaagat ttttctgcgg ctaatggcag aaattcttca aaagaaaggt
    14041 gggattcttt gtccgctaca tccgatactg ctcttacgat tacaaatgga aggttaaaac
    14101 cgtgacaaac ctgcgcaatg gctgctgctt ccatttcgac tgcaacgaca ttcgggaaat
    14161 tctgacgaat ttgattaatc ttatcattac cgttaataaa ggcatcgccg ctacagatta
    14221 agcctgaaac cacattgtaa ccggcttttt tcgcttcctt ttgagctaat tcgactaatt
    14281 gctcgtttgg cgaaaatgtt ggcgggtttg ccggtagttg cccgatttca taaccaaagg
    14341 cggtcacatc aacatcgtga taacgaactt cggttgaaat caaaatatca cctacgttta
    14401 aatctggatc taatccaccg gcagagcctg tattaataat catatccggc tgggtgagct
    14461 gtatcagtaa ggtagtgccg atggcggcag caactttgcc gatacccgat tgtaataatg
    14521 ccacacgggt attgttaatt ttgccttcaa aaattttaca acctgctaat tcagtgactt
    14581 taggttcaac cattacttgg cgtaaaatct caatttcttg tgccatcgca ccaataatac
    14641 caattttcat tactttcctt ctctaatgta ttgtttattt tttgaaaaaa acgctatttt
    14701 aacagcatta atagtgagga gggggtgttt cttctgcttg tgaagcaact tggcttagtt
    14761 gagccccttt caatttctca gcaatatggc gaatctgagt ttgtaactta tcaattgcaa
    14821 attgttgctc aataagtgct tgatttaact cttcaataat cagctcttgg aaagcaactt
    14881 tagtctccaa ttcggtaatt tttgccgata atgtataatt attatccatt ttttactaaa
    14941 aaaaggttgt gtgaaaagga attacacttt accctatctt aaattttctt aacagttatt
    15001 tttataagga aaaattatgt taaaaaccaa attatcatta tttactctta ttgttggcac
    15061 actttttagt acaaatgtga tggcagaaga aaaagcagat cctaaatttg tggatgattc
    15121 ctcttatgcc gtgggtgtat taatgggtaa aaatattaat ggtgtgattg agtcacaaaa
    15181 ggatattttt acctataacc aggataaaat cttagccggt gttcaggaca ccttaaagaa
    15241 aaccggtaaa ttaaccgatg aagatttgca aaagcagtta aaatcgttag atgcctattt
    15301 atctgcgaaa gaagcaaaga ttaacgaaga aaaaaccaaa gcaacggtag ctgcaggcga
    15361 taaattccgt gctgattata aaaaacagtc tggcgtaaaa gaaacggctt caggcctgtt
    15421 atataaaatt gaaaaagcag gtgaaggcaa ttcaccaaaa gcggaagata ctgtgaaggt
    15481 gcattacaaa ggcactttga ctgatggcac ggtatttgac agctcttacg accgtggtga
    15541 gccgattgaa tttcagttaa atcaattaat tccgggttgg attgaagcga ttcctatgtt
    15601 gaaaaaaggc ggtaagatgg aaattgtagt gccacctgca ttagcttatg gtgatcgtgc
    15661 cgcaggcaaa attccagcaa attcaacctt gaaatttgaa attgaattat tagattttaa
    15721 agcagcagat gctaagaaat aattcgttat tccttaatta ttgaagatac gtaagcggtt
    15781 agatttatta taatatttgc aaaaaatgtg ataaaactaa ccgcttgtaa tttgtattat
    15841 gaccaaaaaa tttacgcctt tttctgacga agatcacgcc attcttgctt cttactttcc
    15901 gatggtagat gggattgcgg cactgattgg tgagcattgc gaaattgtat tgcattcgtt
    15961 agagtttctg gaacattcgg caatttatat tgctaacgga cacaatacta accgtaaaat
    16021 cggctctccg attactgacc gtgcattgaa atcgctgcat catatggcaa cggatagcgt
    16081 ctccaaacct tattttacca aggcaaaagg tggcgtttta atgaagtcta tcactattgc
    16141 gattcgtaat ggtaaacagc acgttatcgg gttactgtgc attaatatta atttggaagt
    16201 gcctacctca cagtttctca attcttttat tgcccctgta gataccgctt cagaagttac
    16261 ttttgccagt tcagtagaag atttggtttc acaaacgatt caaacgacca ttgatgatgt
    16321 gatggcagat cgtcaaattt ctaacaataa taaaaatcgt caaattgtga tttcgttatt
    16381 tgagaaaggg atttttgata ttaaagattc cattaaccaa gtagcggaga agctggatat
    16441 ttcacgccat actgtgtatc tctatattcg tcaaattaag caggacaatg attaatggat
    16501 tatgtattag cgataaaatc accggtttat ggttcacaag gggcattttt agcctaccaa
    16561 gtggcggaag aattattaaa agccaatcat acaatttgcc aaatattctt ttttcaagaa
    16621 ggcgtgagca atgctaatgc cttagtgaat ccagcaagcg atgaagtgaa tttagtcgag
    16681 atgtggaaaa aattggctaa attgcaccgc ttgcctctgc atttgtgcat tgctgctgcc
    16741 cagcgtagag gcgtggtgga tgagcaaatc tcagctaatg caacacataa tttagccgaa
    16801 ggatttaccc tagccgggtt aggcgaattt agccaagcag tattaaaagc ggatcgatta
    16861 ctgacttttt aagatgaaga aatataaact tgccttttta tttacccagc caccttttgg
    16921 ttcggcagtt agccgtgagg ggctagatgc cttgcttgca gctagtgctt tttgtgacga
    16981 gcaagagata gctatcctct ttatcaatga tggcgtattt aatctcattg ccgatcaaca
    17041 gccggaaaaa ctcttacaaa aagatcatat ttccaccttc aaattattgg agttgtatga
    17101 cttaactgaa tgttttattt gccaagaaag tgtaagttta cgagggctgg ataatgcaga
    17161 ttggttactg cgaatgcttc aatttaaaac tcacgctgag atgatcgcat tgctcaatca
    17221 agctgaaaaa gtaatgacgt tttaaggaat atttatgctt tatacccttt ccaaagcgaa
    17281 ttatgatgaa gaaaccttaa acttcttttt ctcacatctt agtgagaacg atgcggttgt
    17341 tctgtggcaa gatggcgtgc tacaagcggt caaaagtccg caattttttg caaaattgcc
    17401 ccgttgctat ttattggcac aagatgtgca agctcgagga ttgcaagaga agctcactgc
    17461 atttcagtgc atttcattat ccgaattagt caaattaaca gcggtttatt ttccccaggt
    17521 tgcactgtaa cctagagagg atattttttg taataccaaa taatttagat tatgatgtga
    17581 ttcctaaaaa ggagaatatt atgaaaacaa aatgtcttat tccgctacta gcacttacac
    17641 ctgttatggt gatggcagaa gaaaataaca cttgggtaga caagaaacat gaaacagtaa
    17701 gcactacctt agatcgttgg gcaaacaata ttaacagttg gctaggtgat gcagacccag
    17761 ataaaccggg aacggcttct ttacgggtaa tgttagatag ccgttgggat aaacacgata
    17821 aatttactta taagccccgt gttcgtggta aaatcaaact ccctatcttg aaaaagcatc
    17881 taaatgtcgt atttggtgat gacgaactgg ataatgagct taccgataaa aatcatgctg
    17941 gaaaattgta taaaaacgtc aatccaaata aacgctataa ctctcgtgaa gcgagagatt
    18001 cgaactcttc tatcggttta cgttggtctg atggcattaa ggctttaggg attgagaccg
    18061 atttagatgc tggtattcgt tcgggaagcg atattttcgg gcgtttacgc atcagtaaag
    18121 attggaaaat caccgaccag ttcagtaccc gcctagagca aatttatcgt tacggttcag
    18181 agagcaagca ctatttacgt actaactttg aaaataaata taccgaaacg gataccacct
    18241 ttattatgaa ccacaccaat tttgaatatc gtcatgatgt agatgaagaa agaagttggg
    18301 ggaatagttt atatcgtcaa cataacttca aaccactcac gcacatcagc tatggtatca
    18361 gtatgggggg gcgtttagat aaagagttat caaaatttaa ctattggggt ccatttgtct
    18421 cctatcgtca accaatctgg cgcaactggc tctttatcca gcctgaaatc agtttttata
    18481 acgacaaaga taaagatcgt aagcacttta ttcagacatt tgtacgttta gaggctatct
    18541 tctagctatt aagcctcaag tagaatcttg gggcttgttt ttgcaagcgg tcaatttctt
    18601 gccaaaattt acaaaatccg ctataattcc taaccatttt tagcaaaaat tggctgacgg
    18661 cttgaccggt cagccttttg tgcttgaacg caagggctga ttttgtcatt ttaatcagca
    18721 aaatttgcaa atttcctgcc caatttgacc gcttgcagta gcgatttctg actgcttgat
    18781 tggcgattgg aaaatgacat ctcgtacagt ttttataatg ccacttccaa ccgagtcttt
    18841 cgtgtcggat tgtgtaatct caaccaaaat atatttcaga ggctatctta aaaaatggca
    18901 tattcatatt ccgagaaaaa gcgtatccgt aagagctttg gcaaacgccc acaagttctg
    18961 aacgtacctt atctattaac aattcagctt gattcttttg aaaaatttat cgaaaaagat
    19021 cctgaagggc agcaaggttt agaagcggca ttccgttctg ttttcccgat tgtgagcaac
    19081 aatggtgcaa cagaattaca atacgtttct tacgaattag gcgagccggt gtttgacgtg
    19141 cgtgagtgcc aaattcgtgg tacaacctac gctgcaccat tacgcgtgaa attgcgttta
    19201 gtctcttacg atcgtgaagc cgcagccggt acggtaaaag acattaaaga gcaaaacgtg
    19261 tatatgggcg aaatcccatt aatgaccgat aacggtactt tcgtgattaa cggcaccgag
    19321 cgtgttatcg tttctcaatt acaccgtagc ccaggtgtgt tcttcgattc tgacaaaggt
    19381 aaaacccact cttcgggtaa agtgctttat aacgcacgca ttatccctta ccgtggttct
    19441 tggttagatt tcgagtttga tccgaaagat aacttatttg cccgtatcga ccgccgtcgt
    19501 aaattgccgg caaccattat tctacgtgca ttaggctaca ccaccgaaga aatcttaaat
    19561 ttattcttcg agaaaattaa atttgaaatt gccgataata aattattgat gacgttagtg
    19621 cctgagcgtt taagaggcga gactgcatca tttgatattg cagcaaacgg caaagtatat
    19681 gttgaaatgg gtcgccgtat taccgctcgt catatccgtg cgttagaaaa agacaatgtg
    19741 acccaaattg aagtgccggt ggaatatatt gtcggcaaag tagcggctca agattacgtt
    19801 gatttatctt caggtgaagt gatttgcccg gcgaatatgg aaatctcgat ggagatgttg
    19861 gcgaatttat cacaagccgg ttacaaccag atcgaagtat tatttaccaa cgatttagac
    19921 cacggtccat atatttctga aaccttacgt gttgatccaa cttacgaccg tttaagtgcg
    19981 ttggttgaaa tctatcgtat gatgcgtccg ggcgaaccac caacgaaaga agcggcagaa
    20041 gcattattcg ataatatgtt cttctcggca gagcgttatg atttatcggc agtaggtcgt
    20101 atgaaattca atcgctcgtt agaaattccg gaaggcgtag gcagcggtat tttaagcaac
    20161 gatgacatca tcggtgtgat gaaaaaatta atcgaaatcc gtaacggtcg tggtgaagtg
    20221 gatgatatcg accacttagg taaccgtcgt atccgcagcg ttggtgaaat ggcagaaaac
    20281 caattccgca ttggtttggt gcgtgtagaa cgtgcggtgc gtgagcgttt atctttaggc
    20341 gatttagatg gtgtaacacc acaagattta atcaacgcta aaccgatttc agcagcagtg
    20401 aaagagttct ttggttcatc acaactttcg caatttatgg accaaaacaa cccgctttca
    20461 gaggtaacac ataaacgccg tatctcggca ttaggcccgg gtggtttaac ccgtgagcgt
    20521 gccggctttg aagtgcgtga cgtacacccg actcactatg gtcgtttatg tccaatcgaa
    20581 actcctgaag gcccgaatat cggtttgatc aactcactat cggtgtatgc tcgtactaat
    20641 aactacggtt tcttagagac tccattccgt aaagtggtga atggtcaagt aaccgaagag
    20701 atcgagtatt tatctgcgat tgaagaaagc aacaatatca ttgcacaggc gaactcaaac
    20761 ttagatgaga acttccgttt taccgatact tatgtaactt gccgtcagca aggcgaatcg
    20821 ggcttattca aaccggaaga agttcaatat atggacatct caacccaaca agtggtttct
    20881 gtggctgcgg cgttaattcc gttccttgag cacgacgatg cgaaccgtgc gttaatgggt
    20941 gcgaacatgc aacgtcaggc agttccaacc ttgcgtgcgg acaaaccatt agtcggtacc
    21001 ggtatggaaa aaccaattgc tcttgactca ggtgtagcga ttgtcgcaaa acgtggtggt
    21061 acggtgcagt atgttgatgc gtcacgcatt gtagtgaaag taaatgaaga tgaaaccatt
    21121 ccgggcgaag cgggtatcga tatttataac ttaatcaaat acacccgttc aaaccaaaac
    21181 acctgtatca accaagtacc ttgtgtgaac ttgggtgagc cggttgctcg tggtgaaatc
    21241 ttagcggacg gtccttcaac agacttaggt gaattggcat taggtcaaaa tatccgtgtg
    21301 gcatttatgc cttggaacgg ttataacttc gaagactcaa tgttagtttc tgagcgtgtg
    21361 gtacaagaag atcgctttac cactatccac attcaagaat tatcttgtgt ggcgcgtgat
    21421 accaaattag gtgcagaaga gatcaccgct gatattccaa acgtgggtga atctgcatta
    21481 agcaaattag atgaatcagg tatcgtttac atcggtgcag aagtgaaagg tggcgacatc
    21541 ttagtaggta aagtaactcc taaaggtgaa acccaattaa caccggaaga aaaactattg
    21601 cgtgcgatct tcggtgaaaa agcctctgat gtgaaagatt catcattgcg tgttccaaac
    21661 ggtacttcag gtacggttat cgatgttcaa gtatttaccc gtgatggcgt agagaaagat
    21721 aaacgtgcga aagaaatcga agagatgcaa ctgtgtgaag cgaagaaaga cttagcggaa
    21781 gagttggaaa tcttagaagc cggtttattt actcgtgttc gcaacctatt aattgaaggc
    21841 ggcgtaaaag aatctgcatt agatggcgtt gctcgtgaaa aatggttaga acaaaccctt
    21901 gaagacgaag cgaagcaaaa tcagttagaa cagttagcgg aacagcacga agagttacgc
    21961 aaagaatttg aacgtaaact tgagatcaaa cgcaacaaaa ttatccaagg cgacgattta
    22021 gcaccgggtg tgttaaaagt agtgaaagtt taccttgcgg tgaaacgcca aatccagccg
    22081 ggtgataaga tggcgggtcg tcacggtaac aaaggggtta tctcgaaaat caaccctgtg
    22141 gaagatatgc catacgatga aaacggtcag ccggttgaaa tcgtattgaa cccgctgggc
    22201 gtaccgtctc gtatgaacat cggtcagatc ttagaaaccc acttaggctt agcggctcat
    22261 ggtatcggtg atcagattga taagatgatc aaacagcaac aagaagtggc taaattacgt
    22321 gaatatatgc aaaaagccta cgatttaggt cacggctcac aagtcgttga tttaagcact
    22381 ttctctgatg aagaagtgat gcgtttagcg caaaacttac gcaaaggctt accgcttgct
    22441 actccggtat tcgatggtgc acacgaaagc gaaatcaaag gcttattaga gttaggcggc
    22501 ttaccgactt caggtcagat cacactttat gatggtcgta ccggtgagaa atttgagcgt
    22561 ccggtaaccg ttggttatat gtatatgctc aaattgaacc acttggttga tgataaaatg
    22621 cacgctcgtt caaccggttc ttatagcctt gttactcaac aaccattggg tggtaaagct
    22681 caattcggtg gtcagcgttt cggtgagatg gaggtttggg cattagaagc atacggtgcg
    22741 gcttatactc ttcaagaaat gcttacggtg aaatcggacg atgtgaacgg tcgtacgaag
    22801 atgtataaaa acattgtaga tggtacacat tatatggagc cgggtatccc tgaatccttt
    22861 aacgtaatta ccaaagagat ccgtgcatta gcaattgata tggagctgga cgaagcgtaa
    22921 tggtttcact ctcccccttg atgggggaga gacaggcaaa ggatttgttc agaatccttt
    22981 ggcagagaga gggtgatgca agcggtgtaa atttgctaaa tttttgcaaa aatcgaccgc
    23041 ttaccctctc cctgattttg cttctgaacg aggcaaaatc tatccctctc ccacaagggg
    23101 agagggttta aaatcgcaac caaattcgta gagtggatat tctttccacc aaacaaaaca
    23161 acctcaaact aggggcaaaa aagtgaaaga cttagtgaag tttttaaaag cacaaacaaa
    23221 atcgaacgaa gattttgatg tgattaaaat tggtttagca tcaccggaca agatccgttc
    23281 ttggtctttt ggtgaagtga aaaaaccgga aaccattaac tatcgtacct tcaaaccgga
    23341 gcgtgatggt ttattctgtg cacgtatttt cgggccggta aaagattacg agtgcttgtg
    23401 tgggaaatac aaacgtttaa aacaccgtgg cgtaatttgt gaaaaatgtg gtgttgaagt
    23461 aacccaaact aaagtacgtc gtgagcgtat ggggcacatt gaattagctt gccctgtcgc
    23521 acacatctgg ttcttaaaat cactaccgtc ccgtatcggt ttaatcttag atatgccgtt
    23581 gcgtgatatt gaacgtgtgc tttattttga atcttatgta gttactgaac cgggaatgac
    23641 cgatttagag aaaaatcagt tattaaccga agaacaattt atggacgctg aagagcgttg
    23701 gggtgatgaa tttgaagcga aaatgggtgc agaaggtatc caagcattac ttcgtgattt
    23761 agatttagaa caccaatgcg aaaccttgcg tgaagagtta caagaaacca attcagaaac
    23821 caagcgtaaa aaaatcacta agcgtttaaa aaccttagaa gcattcttac aatccggcaa
    23881 caaaccggaa tggatggtga tgacagtatt accggtactt ccaccggatt tacgtccgtt
    23941 agtaccgctt gacggtggac gttttgcgac ttctgactta aacgatttat accgccgtgt
    24001 aattaaccgt aacaaccgtt taaaacgctt gttagattta gttgcaccgg acatcatcgt
    24061 gcgtaacgaa aaacgtatgt tacaagagtc ggttgatgcg ttattagaca acggtcgccg
    24121 tggtcgtgcg attaccggtt cgaacaaacg tccgttaaaa tctttggcag atatgatcaa
    24181 aggtaaacaa ggtcgtttcc gtcaaaactt attaggtaaa cgtgtagatt actcaggtcg
    24241 ttcggtaatt accgtaggcc catacttacg cttacaccaa tgtggtttac cgaagaaaat
    24301 ggcgttggaa ttattccgtc cgtttatcta ctcaaaatta gaaaaccgtg gcattgcttc
    24361 aactattaaa gccgcgaaga aaatggtaga gcgtgaagat cctatcgtat gggatattct
    24421 tgccgaagtg attcgtgaac acccgattct acttaaccgt gcaccaacac ttcaccgttt
    24481 aggtatccaa gcgtttgagc cgttattgat tgaaggtaaa gcgatccagt tacacccact
    24541 cgtgtgtgcg gcgttcaatg cggacttcga cggtgaccaa atggcggttc acgttccatt
    24601 aacccttgaa gcacagttag aagctcgtgc gttaatgatg tcaaccaaca acgtactttc
    24661 accggcaagt ggtgatccga ttatcgtacc gtctcaggac gttgtactcg gtctttacta
    24721 tatgacccgt gagaaagtaa acggtaaagg tgagggaatg tacttccttg accctcgtga
    24781 agcggaaaaa gcataccgta ccggtcaggc tgaattacat tctcgtgtta aagtgcgtgt
    24841 tactgaatat gagaaaaacg aagcaggcga attagaagca aaaacttcgt tagtagatac
    24901 caccattggt cgttcaatct tatggatgat tgcaccaaaa ggtatgccgt ttagcttgtt
    24961 caaccaaacc ttaggcaaaa aagcgatctc gaaattaatt aacgagagct atcgccgttt
    25021 aggtttaaaa gaatctgtgg ttttagctga ccaaattatg tacaccggct ttgcttatgc
    25081 tgctcgttct ggtgcctcag taggtatcga cgatatggta attccggagc aaaaatacgc
    25141 aatcattgaa gcggctgaag cggaagtcgc tgagatccaa gagcaattca acggcggttt
    25201 agtaacagcc ggtgagcgtt ataacaaagt gatcgatatt tgggctgctg caaacgaacg
    25261 tgttgcgaaa gcaatgatgg aaaacctttc aacggaagaa gtaatcaacc gtgaaggtaa
    25321 tccggaaaaa caagcctcat ttaacagtat ctttatgatg gcggactccg gtgctcgtgg
    25381 ttctgctgca cagattcgtc agttagcggg tatgcgtggc ttgatggctc gtccggacgg
    25441 ttcgattatc gaaaccccaa ttactgcaaa cttccgtgaa ggtttgaacg tattacagta
    25501 ctttatttca acccacggtg cacgtaaagg tcttgccgat acggcattaa aaacagcgaa
    25561 ctccggttac ttaacccgtc gtttagttga tgtggcacaa gatttagtta tcattgaaga
    25621 tgactgtggt acgcacgaag gtatcgtgat gacaccactt atcgaaggtg gtgatgtgaa
    25681 agaagccctg cgtgatcgtg tattaggtcg tgtggtggca gaagatgtgt taaaaccggg
    25741 tacagatgaa gtattaattc cacgcaacac cttattagat gaaaaatggt gtgatgtggt
    25801 ggatcgtgaa tctgtggatg tgatcaaagt acgttcggta gtaacttgtg atacagactt
    25861 cggtgtgtgt gctaaatgtt acggacgtga cttggctcgt ggtcacttaa tcaaccaagg
    25921 tgaagcggtc ggtgttattg cggcacaatc tatcggtgag ccgggtacac agttaacgat
    25981 gcgtacgttc catatcggtg gtgcggcttc tgcggcagca aaagaatcta gcatccaagt
    26041 gaaaaacgca ggtacgatta aattaaccaa cgctaaattt gtaaccaaca aagaaggcaa
    26101 aatcgtatta acttctcgta atactgaatt aactgtcatc gacaccttcg gtcgtaccaa
    26161 agaaaactat aaagtgcctt atggtgcggt gctttctaaa cacgacggtg cagaagtggc
    26221 tgtgggtgaa gtggttgcga actgggatcc gcacacaatg ccggtaatct cagaggtatc
    26281 aggtcgtatc caatttagcg acatcgtaga tggcttaacc gttactcgcc aaaccgatga
    26341 attaaccggt ttatcatcta tcgtggtgca agatgtgggt gaacgtgcaa ccgcaggtaa
    26401 agatttacgt ccggcattac gcttagttga tagcaacggc aaagacatct taattccggg
    26461 tacagacgtt gcagcacaat acttcttacc gggtaaagca atcgtaacct tagacgatgg
    26521 tgcagaaatt gaagtcggtg aagccttagc ccgtattcca caagaatctg tggggacgaa
    26581 agatattacc ggtggtcttc cacgcgtagc agacttattc gaagcccgta aaccgaaaga
    26641 gccggcaatc ttggcggaaa tttcaggtat tgtgtcgttc ggtaaagaaa ccaaaggtaa
    26701 acgccgcttg gtaattactc cggcggaagg cgaagcgttt gaagagatga ttccaaaatg
    26761 gcgtcagctc aacgtatttg aaggcgagat ggtacaacgt ggtgatgtga tatcagacgg
    26821 tgcagaaact ccgcacgaca tcttacgctt acgtggcgtt cacgccgtta ccgactacat
    26881 cgtaaacgaa gtgcaagaag tttaccgctt acaaggggta aaaattaacg acaagcacat
    26941 cgaagtgatt gttcgccaaa tgttgcgtaa agctgtgatc accaacgctt acgactctga
    27001 attcttagag ggcgaacaag tggaagtggc tcgtgtgaaa attgccaacc gcaaacgtgc
    27061 tgaagaaggc aaaccgttgg tagaatttga acgtgaattg cttggtatta ccaaagcatc
    27121 tcttgcaaca gaaagcttta tttctgcagc ctcgttccaa gaaaccactc gagtgcttac
    27181 cgaagccgca gtggcaggta aacaagatga attgcgtggc ttaaaagaga acgtaatcgt
    27241 tggtcgctta atcccggcag gtaccggttt tgcttaccac caagcacgag ctaaaaaacg
    27301 tgcccaactg gaagcaggaa ttgcagttgt ccctgaattt gaagcaccgg cagctaaagc
    27361 caattcattc gttaccgatg cagacatcga agctgaattt gaatttgttg cagacgatgc
    27421 aacccaaagt ttagcagcgt tgttaaatgc gggtgaggaa gagtaatagc tcgtagggta
    27481 tgataaatta aaaaatctcc tagaatataa tttctaggag gttttctact tgaatataag
    27541 ggaaaaatat atagaatgta agggcttatt caatttgtgg ataaggtaat caacagtatg
    27601 tcaatagttg ataacatttc ataaagcgtt tcagctactg aacataaact aataaagaat
    27661 ttgataatga ttattgtcat attagattcc ttgtgagtta taatagttga ttgattatta
    27721 taatatatat ttagcagata gcggtttatt cgacgggtat cctaaggtac ctaggctata
    27781 taaagactgt taactattca aatagttagg gacaaccgca atccttagtc tttagttttg
    27841 ctttcattaa attttctatt atggatatat cttggtataa gcctcgtaat tacttacatt
    27901 tcgattcacc cataactctt caacaagcaa ttaaattagt cgctaatcca aataatgtag
    27961 taaaacatag tttctaccca ttcttatctt atacactatc tgtggctaaa ataaaaaagg
    28021 ataaaaatga aggtaaatta gtacgtttaa taaaaaatag aggaatatct tattcatctc
    28081 at
//
LOCUS       DANMBQ010000017        27482 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.017, whole genome shotgun sequence.
ACCESSION   DANMBQ010000017 DANMBQ010000000
VERSION     DANMBQ010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 27482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27482
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.017"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(170..886)
                     /gene="rph"
                     /locus_tag="PXE92_000667"
     CDS             complement(170..886)
                     /gene="rph"
                     /locus_tag="PXE92_000667"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001261764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HDL5759941.1"
                     /translation="MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVE
                     ESVPRFLKGQQQGWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVV
                     DLKALGERTVTVDCDVIQADGGTRTASITGACVALYDAMNKLVANGTLKTNPMKGLVA
                     AISVGIVAGEAVCDLEYLEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLL
                     DLAKQGISQLVEAQRKALAE"
     gene            1167..2030
                     /locus_tag="PXE92_000668"
     CDS             1167..2030
                     /locus_tag="PXE92_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HDL5759942.1"
                     /translation="MIYSMTAFAHLEMKKEWGNAVWEIRSVNQRFLETYFRLPEQFRN
                     LEMTLRERLRSALTRGKVECSLRIDLSKTQNSEIALNKEYAAQVVQSLKWLKETANEG
                     EINLVDVLRFPGVVDNESQDLDQIAQDLLAGFEQILADFIAMRAREGENVQALILQRL
                     EAISVEAAKVQAQMPEILQWQKDRLQQRFDELNLQLDPQRLEQEMVLLAQRVDVAEEL
                     DRLQLHVKETTNILKKGGAVGRKLDFMMQELNRESNTLASKSINADVTNSAVELKVLI
                     EQMREQIQNLE"
     gene            2039..2929
                     /locus_tag="PXE92_000669"
     CDS             2039..2929
                     /locus_tag="PXE92_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HDL5759943.1"
                     /translation="MAMNFKQVSQSYPNLCVPLSQYCLIEIAGVDAEKYLQGQLTCDV
                     AKISVGEHTLTSHCDPKGKMSALLRLYRAENEKFMAIIHRSLLPEALTQLKKYAVFSK
                     VTFTELDTPLYGMAGEAAFAKLSENMTALRLTTGQPRAIVWGEELETTADEQLWTLMD
                     IQDGIPVLLQQNQFELIPQATNLQALESAISFTKGCYIGQETVARAKYRGANKRALFT
                     LAGNFESEISLPEVASAIEMQLGENWRATGTVLTSATDENTLWVQVVLNKDVEPNTKF
                     RANGVALEMVELPYSLAENE"
     gene            complement(2961..3221)
                     /locus_tag="PXE92_000670"
     CDS             complement(2961..3221)
                     /locus_tag="PXE92_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001196283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HDL5759944.1"
                     /translation="MALLITHKCTNCDMCLPECPNEAISVGDDIYIIDPVLCTECVGH
                     YEKPTCQKVCPITNCIIKDPDNIETEEQLWERFVMIHHPDQI"
     gene            3451..3870
                     /gene="rbsD"
                     /locus_tag="PXE92_000671"
     CDS             3451..3870
                     /gene="rbsD"
                     /locus_tag="PXE92_000671"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HDL5759945.1"
                     /translation="MKKTLNLNAQLSHSIATLGHTDSLTVCDAGLPIPNTIERIDLAL
                     TAGVPSFLQTFDVVVSELFVERVLLAEEIKHKNPQVLAALLERLTQLEQTQQNKIQID
                     YVNHEIFKEQTHYSKAVVRSGECSPYANIILYSGVPF"
     gene            3880..5376
                     /gene="rbsA"
                     /locus_tag="PXE92_000672"
     CDS             3880..5376
                     /gene="rbsA"
                     /locus_tag="PXE92_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
                     /protein_id="HDL5759946.1"
                     /translation="METLLKMSGIDKEFPGVKALSNACLSVYGGRVMALMGENGAGKS
                     TLMKVLTGIYSKDAGSISYLGKEVTFKGPKDSQEAGISIIHQELNLVGNLTIAENIFL
                     GRESKTAWGAIDWKKMYAEADKLLARLGVKHSSHQLCAELSIGEQQMVEIAKALSFES
                     QVIIMDEPTDALTDTETASLFKVIRELKAENRGIVYISHRLKEIFEICDDVTVLRDGQ
                     FIGERVIADIDEDQLIEMMVGRRLEEQYPHLHQERGELLLEVKNLSGSGVNNVSFQLH
                     KGEIVGISGLMGAGRTELMKVLYGALPKTAGSIELNGKAISNHCPQDGLNNGIVYISE
                     DRKGDGLILGMSVKENMSLTSLDHFSKAGSIRHDAEKLAVDDFIEMFNIKTPSREQQI
                     GLLSGGNQQKVAIAKGLMTRPNVLILDEPTRGVDVGAKKEIYQLINEFKKDGLSILMV
                     SSDMPEVLGMSDRILVMHEGQISAEFSRAEATQEKLLAAAIGKSTGLN"
     gene            5386..6354
                     /gene="rbsC"
                     /locus_tag="PXE92_000673"
     CDS             5386..6354
                     /gene="rbsC"
                     /locus_tag="PXE92_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HDL5759947.1"
                     /translation="MATQTKQFQLGRFLIEQRSFVALFILIVSVSMINPDFFSVDNIL
                     NILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALTGAVAATLVGSELPILLVIPLVL
                     LLGTAFGGISGAIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPISTGFSDQADAFAF
                     IGTGYLFGIPVPIWIMAVVFGLAWYILKHTPIGRYIYALGGNESATQLSGINVNKIKI
                     FVFAVSGFLSALAGLIVTSRLSSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTL
                     VGALIIGFLNNALNLLDISSYYQMIAKALVILAAVLADNYLGTKKV"
     gene            6377..7255
                     /gene="rbsB"
                     /locus_tag="PXE92_000674"
     CDS             6377..7255
                     /gene="rbsB"
                     /locus_tag="PXE92_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
                     /protein_id="HDL5759948.1"
                     /translation="MKKLTTIASAVMLSLSVAATASAKETIALAVSTLDNPFFVSLKD
                     GAQKKADELGYKLVVLDSQNDPAKELSNVEDLTVRGAKVLLINPTDSEAVGNAVAIAN
                     RNKIPVITLDRGAAKGEVVSHIASDNVAGGKMAGDFIAQKLGSGAKVIQLEGIAGTSA
                     ARERGEGFKQAIEAHKFNVLASQPADFDRTKGLNVTENLLSSKGDVQAIFAQNDEMAL
                     GALRAVSSAKKEVVIVGFDGTDDGVKAVESGKLAATIAQQPELIGSLGVETADKVLKG
                     EKVEAKIPVDLKVISK"
     gene            7376..8305
                     /gene="rbsK"
                     /locus_tag="PXE92_000675"
     CDS             7376..8305
                     /gene="rbsK"
                     /locus_tag="PXE92_000675"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HDL5759949.1"
                     /translation="MKKLTVLGSINADHVISVPYFAKPGETLTGHSCHIAYGGKGANQ
                     AVAAARLGAKVSFIGCIGSDDIGKAMKSAFEQDGIDTRSIKTIPNEMTGIAMIQVAES
                     GENSIVISAGANGHLDETVVAKCAAEITQADYLLMQLETPLPAIVQAAKLAQQNGTKV
                     ILNPAPARALPDELLNLLDMITPNETEAEILTGVKVVDEASAIQAAQVFHQKGIEKVL
                     ITLGSKGVFVSENGVGKIVAGFRVQAVDTTAAGDTFNGALVTAMLEDKPLDQAIRFAH
                     AAAAISVTRKGAQPSIPTRQETLDFLSQQAVSF"
     gene            8319..9329
                     /locus_tag="PXE92_000676"
     CDS             8319..9329
                     /locus_tag="PXE92_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5759950.1"
                     /translation="MATMKDIARLAQVSTSTVSHVINNSRFVSEEIRERVQRVVKELN
                     YTPSALARSLKVNETKTIGMLVTATGNPFFAEVMAGVEQYCQQHQYNLIIATTNGDTE
                     RLQHHLQMLMQRKVDGLLLMCGDTRLNADESLNIPLPLVVLDWWFTELNADKIFENSI
                     SGGYLATKTLIEAGHSKIAIITGNLKKSLAKNRLEGYKKALAEANIPLNPNWVFESHF
                     DFAGGVNGMNALLAQSEKPTAVFACSDTIALGAYQAIWQQGLRIPQDISIIGYDDIEL
                     AKYLSPPLSTISQPKAELGRLAVETLLKRIRFKSTDFQTIMLEPELVLRHSIQTINKN
                     AE"
     gene            complement(9365..9994)
                     /locus_tag="PXE92_000677"
     CDS             complement(9365..9994)
                     /locus_tag="PXE92_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL5759951.1"
                     /translation="MTAPTQILLIDDHPLMRQGMRQLLELDHQFSVVGEASNGTDGIK
                     LALRLEPDVIILDLNMKGLSGLDTLRSLRAQGIDARIIVLTVSDEQSDVFALMDAGVD
                     GYLLKDTDTPELLDNIRKAAAGEVVLSETVRQHLLNRQPENDPLSCLTDRELDVLQWL
                     ATGMSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQQKG"
     gene            10192..12351
                     /gene="rlmKL"
                     /locus_tag="PXE92_000678"
     CDS             10192..12351
                     /gene="rlmKL"
                     /locus_tag="PXE92_000678"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HDL5759952.1"
                     /translation="MTNQTTYFATAARGFEEILKTELEQICAAECKVAQGGVHFTTTQ
                     KGAYQALLHSRLASRILLPLISTKIFSDSDLYASIVSFNWADLFDPRDTFYIDFSGTN
                     REIRNTQFGAMRVKDGIVDYFERKGFARPTVDKDNPDVRIHVYLDRENVVVSLDLSGD
                     ALHIRGYREETGKAPLRETLAAAIILRSGWKVGTPLVDPMCGSGTLLIEAAQMAANIA
                     PQLHRKHWGFNAWKGHQQAMWKAVLDEAFRNVELGAVGENCNSSLQKMFFGFDLDHRV
                     LTKAKQNAKNAGVDHLIQWQQGDVAALKNPIPEKIGTVVCNPPYGERLGTTPALIALY
                     SVFGQRLKQQFAGWNASIFSGEPELLNCLRLRSARQFKAKNGPLDCVQKNYSISEHNK
                     RSDLDENLQFEQNAQVAPDFANRLTKNIKKIEKWAKQQGIDAYRLYDADLPEYNLAVD
                     RYGDHIVVQEYQAPKNIDEQKARQRLLDAVSATLYVTGVETNKLVLKVRQKQKGTNQY
                     EKLANKGEYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMVGEMAKGKTFLNLFAYT
                     GSATVHAALNGAKSTTTVDMSNTYLNWAEQNLELNNLSLRHHRLFQADCLQWLAECRE
                     RFELIFVDPPTFSNSKRMENSWDVQRDHIELMKQLKRILTADGTIVFSNNKRGFKMDF
                     DGLAALGLTAENISHKTLPLDFERNPQIHNCWIVKNV"
     gene            12528..13007
                     /gene="trmL"
                     /locus_tag="PXE92_000679"
     CDS             12528..13007
                     /gene="trmL"
                     /locus_tag="PXE92_000679"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HDL5759953.1"
                     /translation="MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPFGFGWDDKKL
                     RRSGLDYHEFVDIQKYKNFEDFLERAKPKRLFALTTRGEQNHSDVKYELGDFLMFGPE
                     SRGIPKPLLAEMPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQFGYQNAVAAQSI"
     gene            complement(13101..13919)
                     /locus_tag="PXE92_000680"
     CDS             complement(13101..13919)
                     /locus_tag="PXE92_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HDL5759954.1"
                     /translation="MQEIKLFEQKSVRSHYDEEKDKWYFSIIDVIAILTESLDPSAYW
                     RKLKQRLKAEGNETVTNCHGLKMPSADGKMRLTDVADTEQLFRLIQSIPSPKAEPFKQ
                     WLAKVGYERLQEINDPSQSLDRARENWQKMGRSEKWIQQRMMGQETRNKLTDYWKSSG
                     VEQPQDFAFLTNVIHQEWSGLSVQKHKSLKGLKSQNLRDHMSEAELLFTALAELSSRQ
                     IAESMQAVGVDENAQAGKQGGNIAKNARQELENKTGKSVVTGENFLPPAKNEEE"
     gene            14162..14956
                     /locus_tag="PXE92_000681"
     CDS             14162..14956
                     /locus_tag="PXE92_000681"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HDL5759955.1"
                     /translation="MRLIPLETDHDVSVWAARYIVDRINAFQPTKEKPFVLGLPTGGT
                     PEKTYKELIKLYQAGEVSFKNVVTFNMDEYVGLPKEHPESYHSFMFKHFFDHVDIPLE
                     NINILNGMAEDVNAECERYEEKIRFYGKIHLFMGGVGVDGHIAFNEPASSLSSRTRIK
                     TLTEDTRIANSRFFNNDVSQVPKFALTVGVGTLLDAEEVMILVTGHNKALALQACVEG
                     AVNHLWTISCLQLHRRGIVVCDEPATQELKVKTVKYFKELEKNVAR"
     gene            15037..16179
                     /gene="nagA"
                     /locus_tag="PXE92_000682"
     CDS             15037..16179
                     /gene="nagA"
                     /locus_tag="PXE92_000682"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HDL5759956.1"
                     /translation="MNHYALTNCVIYTGEQVLYQHALVVKEDKIDSIVLEENLPLDLQ
                     KIDLKGANLSAGFIDLQLNGCGGVMFNEEITTRTLEIMQETNLRSGTTSYLPTFITSP
                     DEGVKQAVAVMREYLSKHKNQALGLHLEGPYLSVAKKGVHRPEFIREISPEMLDFLCD
                     NGDVITKITIAAENPTADHIKRFNDAGIIVSIGHSNATFAQTKQRIAEGAAFATHLHN
                     AMSPVSNGREGGVVGAVLDSDIYTGIICDGLHVEWGNIRIAKKAKGDKLVIVSDAVAA
                     AGSDIESFIFVGKKVTVKDGKCYDEFGALGGAAITMIESIRNVVQHCDISLNEAIRMS
                     TLYPAKAIGVEETLGSLEAGKIANLAIFDNQFEVKATAVNGQLQWH"
     gene            16261..16575
                     /locus_tag="PXE92_000683"
     CDS             16261..16575
                     /locus_tag="PXE92_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2322 family protein"
                     /protein_id="HDL5759957.1"
                     /translation="MQFKDYLATFPTIDHLAGLNVINSGEVIQHIPAIEGKLGSLKLY
                     NALFAKFDGKLTASAAKQGLEWFAEHVEDAKNNVGKHPNIDLLFRVIEQDLSLSLEPI
                     VK"
     gene            complement(16654..17844)
                     /locus_tag="PXE92_000684"
     CDS             complement(16654..17844)
                     /locus_tag="PXE92_000684"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDL5759958.1"
                     /translation="MTQAIESVLAELKRGVENIYSEEDLITKLKENRPLRIKLGADPT
                     APDIHLGHTVVLNKLRQFQQFGHEVYFLIGDFTGMVGDPSGKNSTRPPLSREDVLRNA
                     ETYKEQIFKILDPQKTKIVFNSEWLGKLGTEGMIRLASNYTVARMLEREDFKNRFTNQ
                     QPIAIHEFIYPLLQGHDSVELKADVELGGTDQTFNLLVGRELQKSAGQKPQVAMTLPL
                     LVGLDGEKKMSKSLGNYIGVTEAPSEMFGKIMSISDDLMWDWYNLLSFRPLDEIAQLK
                     ADVENGKNPRDVKILLAKEIIARFHDEAAADAAEQEFINRFQKGAIPDEVPEFTFEGE
                     IGLAALLKEAGLVPSTSEAIRSAQQGGVKIDGEKVEDVKQTAQKGTFVYQVGKRKFAR
                     ITVK"
     gene            complement(18207..19511)
                     /locus_tag="PXE92_000685"
     CDS             complement(18207..19511)
                     /locus_tag="PXE92_000685"
                     /EC_number="7.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium ion-translocating decarboxylase subunit
                     beta"
                     /protein_id="HDL5759959.1"
                     /translation="MESIIALFKGMGLMHLELGQAIMIVISLVLLWLAIARKFEPLLL
                     LPIGFGGLMSNIPEAGMAMTALDNLLHSGSAEQLAIIAAKVNSTSLDLHSIKDAIALA
                     APSVQNELEVMAGDMGYTAGVLALFYKVAIGYGVAPLIIFMGVGAMTDFGPLLANPRM
                     LMLGAAAQFGIFATVLGALGLNWLGIIDFTLPQAAAIGIIGGADGPTAIYLASKLAPE
                     LLGAIAVAAYSYMALVPLIQPPIMKALTTEQERKIRMVQLRNVSNREKIIFPIVLLLL
                     VALLLPDAAPLLGMFCFGNLLRTSGVVERLNDTAQNALINIVTIFLGLSVGAKLVADK
                     FLQPQTLGILVLGVIAFGIGTASGVIMAKIMNRFSQHKINPLIGSAGVSAVPMAARVS
                     NKVGQEYDKQNFLLMHAMGPNVAGVIGSAIAAGVMLKYISTM"
     gene            complement(19521..21347)
                     /gene="oadA"
                     /locus_tag="PXE92_000686"
     CDS             complement(19521..21347)
                     /gene="oadA"
                     /locus_tag="PXE92_000686"
                     /EC_number="7.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-extruding oxaloacetate decarboxylase
                     subunit alpha"
                     /protein_id="HDL5759960.1"
                     /translation="MTTQPKKIAITDVVLRDAHQSLFATRLRLDDMLPIASELDNIGY
                     WSLETWGGATFDSCIRFLGEDPWVRLRELKKAMPKTPMQMLLRGQNLLGYRHYADDVV
                     DKFVERSVANGMSVFRVFDALNDPRNMQAALQAVKKHGGHAQGTLSYTTSPVHTLQTW
                     LDVTEQLLEIGVDSLVIKDMSGILTPMAAYELVSEIKKRYDVELHLHCHSTTGMAEMA
                     LLKAIEAGVDGVDTSISSMSGTYGHPATESIVATLQGTPYETGLSIPALEKISAYFRN
                     VRKKYAKFEGQLRGIDSRILVAQVPGGMLTNLESQLKQQNASDKLDLVLQEIPRVRED
                     LGNIPLVTPTSQIVGTQAVMNVLMGERYKTIAKETAGILKGEYGRTPAPVNKALQDRV
                     LEGAEPITDRPADHLPPELEKLVAEVTASAKEKGITLSENMIDDVLIVALFQQVGWKY
                     LENRNNPSAFEPVPSADEAKPAQASAASAPKAQTQSGSAIYTVELEGKAFVVKVSEGG
                     DITNIAPTPATPAPQAVDSAPKSANTLSANAEPVNAPMAGNILKVEVKEGQQVAEGDV
                     LLILEAMKMETQICAAKSGTIQGINVKQGDVVAVNDTLMSIA"
     gene            complement(21387..21641)
                     /locus_tag="PXE92_000687"
     CDS             complement(21387..21641)
                     /locus_tag="PXE92_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxaloacetate decarboxylase subunit gamma"
                     /protein_id="HDL5759961.1"
                     /translation="MAPAELFAEGINLMVAGMGFVMLFLLVLIYAISFISKIINQYFP
                     EPVSIPASKTVPQSPPDDLERLRPVIAAAIAHHRRINGQH"
     gene            complement(21831..23018)
                     /locus_tag="PXE92_000688"
     CDS             complement(21831..23018)
                     /locus_tag="PXE92_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL5759962.1"
                     /translation="MSNNNRSALLGAAFLMATSAIGPGFLTQTATFTQTLLASFGFVI
                     LLSILLDIGAQLNIWRIVAVSEKKAQDIANAVLPGAGYFLALLIVMGGLAFNIGNVGG
                     AGLGLNILTGLSPEMGAVVSGAIAVGVFLFHEAGKVMDRFAQIMGFVMIALTIFVAVK
                     ANLPIDDAVVHTFVPEKLDVIAIVTLVGGTVGGYITFAGAHRLLDAGIKGKENLKEVS
                     KSSVSAILIASIMRVVLFLAVLGVVSMGVQLDPKNPAATPFAHVAGDVGLMIFGVVIW
                     AASITSVIGAAYTSVSFITSFSPFIEKHKNCFIVAFIVVSTAVLATIGRPAQVLVFVG
                     TLNGLILPISLGLILLAAHKTKIVGDYKHPVWMTVSGAIVVILMAVLSAMTLSKYISG
                     LMA"
     gene            complement(23293..24030)
                     /gene="pxpA"
                     /locus_tag="PXE92_000689"
     CDS             complement(23293..24030)
                     /gene="pxpA"
                     /locus_tag="PXE92_000689"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HDL5759963.1"
                     /translation="MNHVDLNVDLAEGCGNDHSLLQLVTSANVCCGLHAGDYNEMRKA
                     INWAKENSVRVGAHPSFPDRENFGRTNMQLPDDELKACLLYQLGAAKALCDAENMPMS
                     YVKPHGALYNMAAKDPHLATLIANTVKQFDPNLKLMGLSGSLMLSIAEQHGLETISEV
                     FADRHYLADGSLVPRTRDDAMVESDDEAISQVLQMVLDGTVPTVDGGNVAIKADSICL
                     HGDGEHAVVFAERIKKELQAKGILVKA"
     gene            complement(24017..24946)
                     /locus_tag="PXE92_000690"
     CDS             complement(24017..24946)
                     /locus_tag="PXE92_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDL5759964.1"
                     /translation="MIYIEIIQGFAHIQDLGRYGYRHLGVSHGGAMDSLALQAGNLLL
                     KNANNAPAIELTLGGMRITFDCDTPFCLTGALVEAELDGTPVFSYYRYTANARQTLTI
                     KRIVLGNYAYLCVAGGFLVPQVLGSASTALKAQFGGFQGRMLKAGDNIATGRRDSRLS
                     LMSIEPIDFTSRIRATASSEYEAFTADSRERFWQQGWQLQNNSNRMGYRFAEKALELT
                     ASLEMLSYAAPSGTVQVPPDGQPIVLMADAQTTGGYPKIACIIQADLGRLAQNPFGST
                     VQFEQVSREQAVEIYQKDQNYLETIRRKANESR"
     gene            complement(24943..25590)
                     /gene="pxpB"
                     /locus_tag="PXE92_000691"
     CDS             complement(24943..25590)
                     /gene="pxpB"
                     /locus_tag="PXE92_000691"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDL5759965.1"
                     /translation="MLTIHHTSEHSLLCLAEPPAELAKQQQIWRVAEQARALDGVLEV
                     VVGMNNFTLFHAIGTDSTRLIQAVQQLWENDQAQAAQSPRLIEIPVHYGGEFGEDLFE
                     VAQFHNTTPEEIIRRHTEPTYTVFMIGFQPGFPYLNGLPQNLHTPRRNVPRTKVPAGS
                     VGIGGRQTGIYPFTSPGGWQLLGRTELPLFDIQHNPPTLLTAGDNVRFVAESITL"
     gene            complement(25684..26508)
                     /locus_tag="PXE92_000692"
     CDS             complement(25684..26508)
                     /locus_tag="PXE92_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HDL5759966.1"
                     /translation="MKKLLLFLLFIGNPIFAKSPELMLVEQYQDQDISGWVMSEKLDG
                     VRGFWDGQQLISRQGYPLNPPDYFIQDFPPFAIDGELFSERGKFEEISSIVRSAQPKG
                     WHKLKLQVFDVPNAQGNLIERLATLENYLKQHPTLHIAIIEQIPIKDKAHLQQFYQSV
                     LEQGGEGVIVRNPNAGYIQGRSAQILKIKPVLDEECTVVAHHKGKGKYTDKLGAITCE
                     NQRGRFRIGSGFKDKERENPPPIGSIITYKYRGVTESGKPRFATFWRIRNDQISEN"
     gene            complement(26642..27466)
                     /locus_tag="PXE92_000693"
     CDS             complement(26642..27466)
                     /locus_tag="PXE92_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759967.1"
                     /translation="MEHFIGLGVAGNFAGHLEQAGEEADFAKVKTVEAVQPKAIFPFY
                     VPAENLGDYQFLSTYPLSNTAINFPSDADNLQIEPEVALICEIGYQDQQVVSLTPTHF
                     AAYNDCSIRRPNANKICEKKNWGASSKGLSAIHLPLDNFNKGGTLDNYNIACFHKRNG
                     ELNTYGIDSPAVEYSYFHQKLLDWIVERMNNQPDEGPMNNISEMLKQANYPTKAIISI
                     GATRYTPFGESNLLQVGDVSMVVVYNVKKYSHSQIEEMAKLETFSEDISALIQTVR"
BASE COUNT         7747 a         5721 c         6265 g         7749 t
ORIGIN      
        1 acagatattt tgtaagaagt gcaatatttc cataaaaaaa taattgttat tttatgattg
       61 agtgtatttt gaaaagggaa ataaaaaaat ctacatctga atcagaacgg ttattctgtt
      121 ttgtcagatg tagattttat ttaaaaagaa aatcaaaaag agaagtgaat tattcagcta
      181 acgctttacg ttgagcttca actagctggc taatgccttg cttcgctaaa tctagcaatg
      241 tcagtaattc ttggtgcgag aacggttcgc cttctgccgt gccttgtact tccactaaac
      301 gaccatcttc gaccatcacc acgttcatat cagtttcagc gttggaatct tccagatatt
      361 ctaaatcgca caccgcttcg cctgctacaa taccgacaga aattgctgcg actaaacctt
      421 tcattgggtt agtttttagt gttccattag ctactaactt attcattgca tcgtacaatg
      481 ctacgcacgc accggtaatt gaggcggtgc gagtgcctcc atcggcttga ataacatcac
      541 aatctacggt aacggtacgt tcgcctaagg cttttaaatc taccaccgca cgcagagaac
      601 gggcaatcaa gcgttggatt tccattgtgc gtccgccttg tttgcctttt gccgcttcac
      661 gctgagtgcg agagtgggtg gctcgtggca acataccata ttctgcggta acccaacctt
      721 gttgctgacc ttttaaaaag cgtggcacgc tttcttctac cgtagcgtta cacaatactt
      781 tggtttcgcc aaactcaatt aataccgagc cttcggcata gcgagtgtag ttacgggtaa
      841 ttttaatttc tctaacttgg ttgtttgctc gattatttgg acgcattttc ttttcctttt
      901 gctaaaattt ttaccatttt agcaaagaac acagtaaaat gtgatttttc tttagcaaag
      961 aatttacata gccctcgccc cttgtgggag agggacggat ttttcttcgt tcagaagaaa
     1021 aatcagggag aggggtaagc ggttattttt atctcaaatt ttacaaattc ctccctctct
     1081 ctgaaaaata tttctgaacg aaatattttt cggtctctct ccctcaaggg gagagagctt
     1141 tacttataaa aacacaagga ataccaatga tttatagtat gacagcattt gcccatttag
     1201 aaatgaaaaa agagtggggc aatgcggtgt gggaaattcg ctcggtaaat caacgctttt
     1261 tagaaaccta ttttcgtttg ccggagcagt ttcgcaacct agaaatgacc ttgcgtgagc
     1321 gtttacgttc tgcactgaca cgaggcaaag tagagtgtag cttacgcatt gatttaagca
     1381 aaacccaaaa cagtgaaatt gcgttaaaca aagaatatgc cgcacaggtg gttcaatcat
     1441 taaaatggtt aaaagaaacc gcaaatgaag gcgaaatcaa ccttgttgat gtgctacgtt
     1501 tcccgggcgt ggtggataat gaaagccaag atttagacca aattgctcaa gatttattag
     1561 ccggctttga acaaattctg gcagatttta tcgcaatgcg agccagagag ggcgagaacg
     1621 tgcaagccct gatcttacaa cgtttagaag caatttcagt tgaggctgca aaggtacaag
     1681 cccaaatgcc ggaaattctg caatggcaga aagatcgttt acaacaacgg ttcgatgaac
     1741 tgaatttaca gcttgatcca caacgcttag aacaagaaat ggtgttactt gcccaacgtg
     1801 ttgatgtggc ggaggaatta gaccgcttgc aattacacgt taaagaaacc accaatatcc
     1861 tgaaaaaagg cggtgcggtt gggcgtaaac tggattttat gatgcaagaa ctaaaccgtg
     1921 aatccaacac gctcgcctca aaatcgatta atgcggacgt gaccaattcg gcggtggagc
     1981 tgaaagtgtt gatcgaacag atgcgtgaac aaattcagaa tttagaatag gacagattat
     2041 ggcaatgaat ttcaagcaag tgagccagag ctatccaaat ctctgcgtgc cgctttctca
     2101 gtattgttta attgaaatcg caggggtaga tgctgagaaa tatcttcaag ggcaattaac
     2161 ctgcgatgtg gcaaaaattt cggtgggcga acatacgcta accagccatt gtgatccgaa
     2221 aggcaaaatg agtgcgttac tgcgtttgta tcgtgcagaa aatgagaaat ttatggcgat
     2281 cattcaccgc agcttattgc ctgaagccct gacgcaactt aaaaaatatg cggttttttc
     2341 aaaagtgacc ttcacggaat tagacacccc actttatggt atggcaggtg aagcagcatt
     2401 tgcaaaatta agcgaaaata tgaccgcttt gcgtttaacc acaggacagc ctcgggccat
     2461 tgtttggggc gaagagcttg aaacgactgc cgatgaacag ctctggacat taatggatat
     2521 tcaagacggc attcctgttc tcttgcaaca aaaccagttt gagctgattc cacaggcaac
     2581 caatttacag gcacttgaat ctgcgatttc attcaccaaa ggttgctaca tcgggcaaga
     2641 aacggtagcg agagcgaaat atcgtggggc gaataaacgt gctttattta cccttgccgg
     2701 caactttgaa agcgaaatca gcttaccgga agttgcttct gcgattgaaa tgcaactggg
     2761 cgaaaattgg cgagcaaccg gcactgtgtt gaccagtgcg actgatgaaa ataccctgtg
     2821 ggtgcaagtg gtgctgaata aagatgttga acctaacacc aagtttagag ccaatggtgt
     2881 agcgttggaa atggtcgagt taccttatag tttggcagaa aatgagtaaa acgaacggtc
     2941 atcagggtat gaccgttttt ttatatctga tcagggtgat gaatcatcac aaaacgttcc
     3001 cacaactgct cttcggtttc gatattatca ggatctttga taatgcagtt ggtaatcggg
     3061 caaactttct ggcaagtcgg cttttcataa tgcccgacac attcggtaca taacaccgga
     3121 tcgatgatat aaatatcatc gcccaccgaa atcgcctcgt tcgggcattc cggcaagcac
     3181 atatcacagt tggtacattt gtgggtaatt aataaagcca tagtttatat tgagaaaata
     3241 aaaattaaac aagcggtcga ttttgcaaaa aaatttgcaa atcttaccgc ttgtcactaa
     3301 atgctaccta ttataaagca aaataatttg aactacttca catttttgca atttggttgt
     3361 ttatccgatt aagaaaattt tttatgatgc catcgaaacg tttcgatgga gtattttcca
     3421 acgtgatgga gcgaaaataa aggggttagt atgaaaaaaa cgctaaatct aaatgcacaa
     3481 ctttcgcaca gtattgcgac actcgggcat accgatagtt taacggtttg cgatgccggt
     3541 ttgccgattc caaacacaat agagcggatc gatttggctt taaccgccgg tgtgccaagt
     3601 tttttacaaa catttgatgt agtagttagt gaattatttg ttgaacgagt gctacttgct
     3661 gaagaaatta aacataaaaa tccgcaagtg ttagcagctc ttttggagcg tttaacccaa
     3721 ttagaacaaa ctcaacagaa taaaattcaa attgattatg tgaaccacga aatctttaaa
     3781 gagcagacac attacagtaa agctgttgtg cgttcgggtg agtgttcacc gtatgccaat
     3841 attattttat attcgggcgt gccgttttag ggtggaatga tggaaacctt attaaaaatg
     3901 agcgggatag ataaagaatt tcccggcgtg aaagccttga gcaatgcgtg cttatctgtt
     3961 tacggtgggc gagtaatggc attaatgggc gaaaatgggg caggtaaatc caccttgatg
     4021 aaagtattga cggggattta tagcaaagat gccggctcta ttagctattt aggcaaagaa
     4081 gttaccttta aaggcccgaa agattcacaa gaagccggta ttagcattat tcaccaagag
     4141 ctgaatttag tcggtaattt aaccattgct gaaaatattt ttttgggccg tgagtccaaa
     4201 accgcttggg gagctattga ttggaaaaaa atgtatgccg aggcggataa actgcttgcc
     4261 cgacttgggg taaaacacag tagccatcag ctttgtgcgg agttatccat tggcgagcag
     4321 caaatggtgg aaattgcgaa agccctgagt tttgagtctc aagtaattat tatggacgaa
     4381 ccgaccgatg ctttaaccga tacagaaaca gcatcgttgt ttaaagttat tcgagagtta
     4441 aaagcggaaa atcgaggcat tgtttatatt tcccatcgtt taaaagagat ttttgaaatt
     4501 tgtgatgatg tgacggtgct aagagacggg caatttatcg gcgagcgagt aattgccgat
     4561 attgatgaag atcagttaat tgaaatgatg gttggtcgcc gtttggaaga gcaatatccg
     4621 catttacacc aagagcgtgg cgagttatta cttgaagtga agaatttaag tggaagtggg
     4681 gtgaataatg tgtcattcca attacacaaa ggtgaaattg tgggtatttc cggcttaatg
     4741 ggggcagggc gtacagaatt aatgaaggtg ctttatggtg cattgccgaa aacagccggc
     4801 tcgatagagt taaatggaaa agcgatttcc aaccattgtc cgcaagatgg gttgaataac
     4861 ggcattgtgt atatttcaga agatcgtaaa ggcgatggtc tgattttggg aatgtcggta
     4921 aaagaaaata tgtctttgac ctctctcgat catttctcca aagccggcag tattcgccac
     4981 gatgcagaaa aattggcggt cgatgatttt attgagatgt ttaacattaa aaccccaagt
     5041 cgggagcaac aaatcgggct gctttccggt ggtaatcagc aaaaagtggc gatcgctaaa
     5101 gggttgatga cccgcccgaa tgtgctgatt ttagacgagc cgacacgggg tgttgatgtg
     5161 ggggcgaaaa aagagatcta tcaattaatt aatgaattta aaaaagatgg gcttagtatt
     5221 ttgatggttt cgtccgatat gccggaagtg ttgggaatga gcgaccgcat tttagtgatg
     5281 cacgaagggc aaatcagtgc agaattttca cgagcagaag cgacacaaga aaagctactg
     5341 gcagcagcta ttggcaaaag tacaggatta aattaaggtg tgtttatggc aactcaaaca
     5401 aagcagtttc aacttggcag atttttaatc gagcaacgtt cttttgtagc gttatttatt
     5461 ttaattgtca gtgtttcaat gattaaccct gattttttca gcgtggataa tattttaaat
     5521 attctacgcc aaacctcggt gaatgcgatt attgcggtcg gaatgacctt tgtgatttta
     5581 attgcaggca ttgatttatc ggtcggttcg gttttagcct taaccggtgc ggttgcagcg
     5641 accttagtcg gttctgaatt gccgattttg ttggtgattc cgctggtttt attattaggg
     5701 acggcatttg gtggtattag tggggcgatt gttgctaaag gtaaagtgca ggcatttatt
     5761 gcgactttgg tcacaatgac cttattgcgt gggattacga tggtttatac cgatggcaga
     5821 ccgattagca ccggcttttc tgaccaagca gacgcctttg cgtttattgg gacaggctat
     5881 ttatttggta ttcctgtgcc gatttggatt atggcggtag tgtttgggtt agcttggtat
     5941 attttgaaac acaccccgat tgggcgttac atttacgctt taggtggcaa cgaatcggca
     6001 acccagcttt caggcatcaa tgtgaataaa attaagatct tcgtatttgc cgtgagtggt
     6061 tttttatctg ctcttgccgg cttaattgtg acttcacgtc tctcttctgc tcagccaacg
     6121 gcaggtgtgt cctatgagtt agacgcaatt gcagcggtag ttgttggtgg aaccagtcta
     6181 atgggcggta aagggcgtgt aatgggaacg cttgtcgggg cattaattat cggtttctta
     6241 aacaatgccc ttaatttatt ggatatttct tcatattatc agatgattgc taaagcgttg
     6301 gttattttag cagctgtatt agctgataat tatctaggca ctaaaaaagt ttaatctatc
     6361 tttaaaggag atttctatga aaaaattaac tacgattgca tcagcggtta tgttaagttt
     6421 atcggttgca gccactgctt cggcaaaaga gactatcgct cttgcagtat cgactttaga
     6481 taacccattc tttgtgagcc ttaaagacgg tgcacagaaa aaagcagatg aattaggcta
     6541 caaattagtg gtgcttgatt cccaaaatga cccggctaaa gagctttcca atgtggaaga
     6601 cttaacggtg cgtggggcaa aagtgttatt gattaaccca accgattcgg aagcggtcgg
     6661 aaatgcggtg gctattgcaa atcgcaacaa aattccggtt attacacttg accgtggtgc
     6721 agcaaaaggc gaagtggtta gccatatcgc ttccgataac gttgccggcg gcaaaatggc
     6781 gggagatttc attgctcaga aattaggctc aggggcgaaa gtgattcaat tagaaggcat
     6841 tgccggcact tccgccgctc gtgaacgtgg tgaaggcttt aaacaagcga ttgaagcaca
     6901 taaattcaat gtattagcca gtcaaccggc tgattttgac cgcactaaag gcttaaatgt
     6961 gactgaaaac ttgctctcaa gcaaagggga cgtacaagct atttttgctc aaaatgatga
     7021 aatggcacta ggagctttgc gtgcagtgag ttcagcgaag aaagaggttg taattgtggg
     7081 ctttgacggc acagatgatg gcgtaaaagc cgttgaaagc ggtaaacttg ccgcaacgat
     7141 tgctcaacaa cctgaactga ttggctcatt aggcgtagaa actgccgata aagtgctaaa
     7201 aggcgaaaaa gtggaagcaa aaattccggt tgatttaaag gttatttcaa aataattata
     7261 cttgaagata gcgttcgtct ctgacgaacg ctttgaatta ataaaatagc actcgtcaga
     7321 gactagtgct atcagaatcc tagttttgtt gtactaggta atttgagggc ttaatatgaa
     7381 aaaactcacc gttctcggta gcattaacgc tgatcacgtg atttccgttc cctattttgc
     7441 caaaccgggg gaaacgctca ccggacatag ctgccacatt gcttatggcg gtaaaggggc
     7501 aaatcaggcg gtggcggcag cacgtttggg agctaaggtt tctttcatcg gttgtattgg
     7561 cagtgatgac atcggcaaag caatgaaatc agcctttgag caagatggca ttgacactcg
     7621 ctcgattaaa acgattccga atgaaatgac cggcattgca atgattcaag tggcggaatc
     7681 gggcgagaac agtattgtga tttcagccgg agcgaacggt catttggatg aaacggttgt
     7741 ggcaaagtgt gcagccgaaa tcacacaggc ggattatttg ctaatgcagc tagaaacacc
     7801 gttgccggcg attgtgcaag cagcaaaatt ggctcagcaa aacggcacga aagtaatatt
     7861 aaaccctgcg cctgctcgag cgttacccga tgaactgtta aacttactgg atatgattac
     7921 cccaaatgaa acggaagcgg aaatattaac cggtgtgaaa gttgttgatg aagccagtgc
     7981 gattcaagcc gcacaagtgt ttcaccaaaa gggcatcgaa aaagtgttga ttacacttgg
     8041 ctcaaaaggg gtatttgtaa gcgaaaacgg tgtaggcaaa atcgttgcag gcttccgtgt
     8101 tcaagcggtg gataccactg ccgcagggga tacttttaac ggagcattag tgactgcaat
     8161 gttagaagat aaaccgctgg atcaagccat tcgttttgct cacgcagcgg cagcgattag
     8221 tgtgactcgc aaaggggctc aaccttctat tccgacccgt caggaaacac tggattttct
     8281 aagccaacaa gcggtgagtt tttaggaaaa ttttgcaaat ggcaacaatg aaggatattg
     8341 cacggcttgc acaggtttcc acctcgaccg tttctcacgt tatcaacaat agccgatttg
     8401 tcagcgagga aattcgggaa agagtgcaga gggtggtgaa agaactgaat tacacgcctt
     8461 ctgcattggc tcgtagcctc aaagtgaatg aaactaaaac catcggaatg ctggtaacgg
     8521 caaccggcaa tccgtttttt gcggaggtga tggcgggggt ggagcaatat tgccagcaac
     8581 atcaatataa cctgattatt gccactacca acggtgacac cgagcgtttg caacaccatt
     8641 tgcaaatgct gatgcaacga aaagtagatg gcttgttact gatgtgtggc gataccagat
     8701 tgaatgccga tgagagcttg aatattccgc tgccattggt ggtgttagac tggtggttta
     8761 ccgagctcaa tgcagataaa atctttgaaa attcaatatc cggcggctat ctcgcaacaa
     8821 aaaccttaat tgaagcaggg cattctaaga ttgcgattat tactggaaac ctaaaaaaat
     8881 cattggcaaa aaatcgttta gaaggctaca aaaaagcact tgccgaggcg aatattccac
     8941 tcaatccaaa ctgggtgttc gaaagccatt ttgattttgc cggcggggtt aatggaatga
     9001 atgctttgct tgcccaaagc gaaaagccga cagcggtatt tgcctgtagc gacaccattg
     9061 ctctaggggc ttaccaagca atctggcaac aaggtttacg aataccgcaa gatatttcga
     9121 ttatcggcta tgacgatatt gaactggcaa aatacctttc cccaccgctg agtaccatta
     9181 gccagcccaa agcggaactc gggcggcttg cggtggaaac tttgctaaaa cgaattcgtt
     9241 ttaaatccac tgattttcaa accataatgc ttgaacctga attagtttta aggcattcaa
     9301 tccaaacaat aaacaaaaac gctgaataat gtgaagttat tcagcgtttt ttatccgatt
     9361 tcaattagcc tttttgctgt tccaaataaa gcacggtggc ggcaactcgg gaatgcacgt
     9421 ttaatttacg cagtaaattg cggatatgca cttttacggt ttcttcggaa ataaagagct
     9481 gagccgcaat ttgtttgttc gacataccgg ttgcgagcca ttgtaaaaca tccagttcac
     9541 gatctgttaa gcaacttaaa ggatcatttt ctggctggcg gttgagtaaa tgttggcgaa
     9601 cggtttcgct taataccact tcaccggcag ccgctttacg gatattatct agtagttccg
     9661 gggtgtcggt atcttttaat aaatagccgt ccacaccagc atccattaat gcaaatacat
     9721 cggattgctc gtctgacact gttaaaacaa tgattctggc atctatacct tgagcgcgca
     9781 atgagcgtaa agtatctagc cctgaaagcc ctttcatatt taaatccaga ataatcacat
     9841 ccggctcaag tcgtaatgca agtttgatac cgtcggtgcc gttgcttgct tcacccacta
     9901 cactaaattg gtgatctaat tccaatagtt gacgcattcc ctgacgcatt aatgggtggt
     9961 cgtcaatgag taaaatttga gttggagctg tcatttattt ctcctttcct ttctcttaat
    10021 cggttaattt tgcaattatt aattcaaaat agcaagttta gggatttact aaatgccgct
    10081 tttttgatct tagctaattt ttaactaaaa aagaaattgc aaaactttgc aagaaaaaga
    10141 ccgcttgttc ggctataatt actgccaatt tttatttcaa gtgtgaaaag aatgacaaat
    10201 caaacaacct attttgccac ggcagcccgt ggttttgagg aaatactaaa aaccgaactg
    10261 gagcagattt gtgcggcaga atgcaaagtc gctcaaggcg gtgtgcattt taccaccacg
    10321 caaaaagggg cttatcaggc attattacac agccgtttag cctctcggat cttactgccg
    10381 ctcatcagca ccaaaatttt tagtgatagc gatttatatg cttccatcgt gtcatttaac
    10441 tgggcggatt tattcgatcc ccgtgatacc ttttacattg atttcagcgg cactaaccga
    10501 gaaatccgca acacccaatt tggggcaatg cgagtgaaag acggcattgt ggattacttt
    10561 gaacgcaaag gttttgcccg cccaacagta gataaagata atccggatgt tcgcattcat
    10621 gtttatttgg atcgtgaaaa tgttgtggtt tcgcttgatt taagtggaga tgccttacat
    10681 attcggggct atcgggaaga aaccggtaaa gctccgttgc gtgaaacatt ggcggcagcc
    10741 attattttgc gttccggctg gaaagtcggc acgccattgg ttgatccgat gtgtggttca
    10801 ggcacgttac tgattgaagc agcacaaatg gcagcgaata ttgcccctca acttcaccgt
    10861 aaacattggg gctttaatgc gtggaaaggg catcaacaag cgatgtggaa agccgtgtta
    10921 gatgaggcat tccgaaatgt tgaattgggt gcggtagggg agaattgcaa ttcgtcccta
    10981 caaaaaatgt tcttcggttt tgatctcgat catcgtgtgc tgactaaagc aaagcaaaat
    11041 gcgaaaaatg caggggtaga tcatctcatt caatggcaac aaggtgatgt ggctgcgtta
    11101 aaaaatccga ttccggaaaa aatcggcacg gtggtgtgta acccccctta tggtgaacgt
    11161 ttaggcacaa cgccggcgtt aattgctctt tattcggtgt tcgggcaacg cctaaaacag
    11221 caatttgccg gttggaatgc ctcaattttt agcggcgagc ctgaattgtt aaattgcctg
    11281 cgtttacgtt cagcccgtca attcaaagcg aaaaacggtc cgttggattg tgtgcagaaa
    11341 aattactcca tcagcgagca taacaagcgg tcagatttag atgaaaattt acaatttgaa
    11401 cagaatgctc aagtcgctcc ggattttgca aatcgcttaa ccaaaaatat caaaaagatc
    11461 gaaaaatggg cgaaacaaca aggcattgat gcctaccgtt tatacgatgc cgatctgcct
    11521 gaatataatt tagcggtgga cagatatggc gaccacattg ttgtgcagga ataccaagcc
    11581 ccgaaaaata ttgatgagca aaaagcccgc caacgcttgt tagatgcagt ctctgctacg
    11641 ctttatgtga caggtgttga aactaataaa ttagtgttga aagttcgcca aaaacaaaaa
    11701 ggcacgaatc agtacgaaaa acttgccaat aaaggcgagt atttctatgt gaacgagtat
    11761 ggggcgaaac tgtgggtgaa tttaaccgat tacttggata cgggtttgtt cctagaccat
    11821 cgcttaaccc gtaaaatggt gggcgaaatg gcaaaaggca aaacattcct gaatctgttt
    11881 gcctacacgg gttcagctac ggttcacgct gctcttaatg gggcaaaatc gaccactaca
    11941 gtggatatgt cgaacaccta tttgaactgg gcggagcaaa atttagagct gaataattta
    12001 tcacttcgcc atcatcgttt gttccaagcc gattgcttgc aatggctggc agaatgccgt
    12061 gagcgatttg agctgatttt tgtcgatccg ccgactttct ccaactcaaa acgaatggaa
    12121 aacagttggg acgtgcaacg agaccatatt gagttaatga aacagcttaa acgtatttta
    12181 accgctgatg gtaccattgt gttctcgaac aataagcgtg gctttaaaat ggattttgac
    12241 ggtttggcag cattaggctt aacggcggaa aatatttcgc ataaaacctt accgttggat
    12301 tttgaacgca atccgcaaat ccataattgt tggattgtga agaatgtata gataataccc
    12361 tcgacccttg tgggagaggg atagattttt cttcgttcag aagaaaaatc agggagaggg
    12421 taagaagtta ctgatgaaag agttatttcc ccctctctct gaaaaatatt tctgaacgaa
    12481 atatttttcg gtctctctcc cacaagggga gagagtaagg ctaaaaaatg ttagatattg
    12541 ttttatacga acctgaaatt ccgcaaaaca gcggaaatat tatccgcctt tgtgccaact
    12601 gtggctttcg tttgcatatg attgaaccgt tcggctttgg ttgggacgat aaaaagctcc
    12661 gccgttcggg gctggattat cacgaatttg tggatattca aaaatataaa aattttgaag
    12721 atttccttga gcgtgctaag cctaaacgct tgttcgcctt aaccaccaga ggggagcaga
    12781 accacagtga tgtgaaatat gaacttggcg attttttaat gttcgggccg gaaagcagag
    12841 gcattccaaa gccattatta gcggaaatgc cgatgtcgca aaaaatccgc attccgatgt
    12901 gcaaagacag ccgcagtatg aatttatcta actcggtggc ggtggttgtg tatgaggcgt
    12961 ggcgacaatt cggctaccaa aatgcggtag cggcacaatc tatttaactt gcaagcggtg
    13021 tgattttggc tattttttgc aagtttgtgg tcaaggttgg gggaggctcg accttgacta
    13081 attaagaaca tctattgtgt ctattcttct tcatttttag ctggaggtaa aaaattctct
    13141 ccggtaacaa ctgatttacc tgttttattc tccaattcct gacgggcatt tttggcaata
    13201 ttgccacctt gttttcctgc ttgggcattt tcatcaaccc caactgcctg catactttct
    13261 gcaatttgcc gactggaaag ttcagcaagt gctgtaaata acaattcagc ttcgctcata
    13321 tgatctcgca gattttggct ttttaaacct ttaagcgatt tatgcttttg tacagatagt
    13381 ccgctccatt cttgatgaat cacattggtt aaaaatgcaa aatcttgtgg ctgttcaacc
    13441 cctgacgatt tccaataatc ggtcagttta tttcgggttt cttgtcccat cattctttgc
    13501 tgaatccatt tttcacttcg tcccatcttc tgccaattct cccttgctcg atctagactt
    13561 tgacttggat cgtttatttc ctgtaagcgt tcataaccta cttttgctaa ccattgtttg
    13621 aagggctctg ctttcggact agggatagat tgaataagtc ggaaaagttg ttcggtatct
    13681 gctacatcag tcaaacgcat ttttccgtca gcagagggca ttttcaaccc gtgacaattt
    13741 gtcacggttt cattgccttc tgcctttagc ctctgtttta gcttacgcca ataagcagag
    13801 ggatctaggc tttcggttaa aatagcaatc acatcaataa tagaaaaata ccatttatct
    13861 ttttcttcat cgtaatgact gcgtacagat ttctgttcaa aaagtttaat ttcttgcata
    13921 ataaaaatac tgtatataaa aacaagaaaa gtataacagt tgtcagcttt tcagcaagta
    13981 gcaaaagtga ttttttcgat ctcgatccca aaaatgattt ttgggtattg atttttcaat
    14041 cgataaattt tctgtgatca ggatcacaaa aatagcagaa aaaatagaaa ttgaagttgt
    14101 atttcattaa aataataaaa aatgaagtga tttattcaga attgatattt aaggagagac
    14161 tatgcgttta attccgttag aaactgatca cgatgtgagt gtttgggctg ctcgttatat
    14221 tgttgatcgt atcaatgcat tccaaccaac caaagaaaaa ccttttgtgc ttggcttacc
    14281 aaccggcggt acgcctgaaa aaacctataa agaattaatt aaattatatc aagctggtga
    14341 agtgagcttt aaaaatgtgg tgactttcaa tatggacgaa tacgtcggct tacctaagga
    14401 acaccctgaa agctaccaca gttttatgtt caagcacttt tttgaccacg ttgatattcc
    14461 gcttgagaat atcaatatcc tcaacggtat ggcggaagac gtgaatgcag aatgcgaacg
    14521 ttatgaagaa aaaatccgtt tttatggtaa aatccatctg tttatgggtg gggtcggtgt
    14581 ggatgggcat attgcgttta atgagcctgc atcttcgctt tcttcccgca ctcgaattaa
    14641 aacgcttacc gaagatactc gcattgcaaa ctcacgtttc tttaacaatg acgtaagcca
    14701 agtgccgaaa tttgctttaa ccgttggggt tggtacgttg cttgatgccg aagaagtgat
    14761 gatcttagtg accggccata acaaagcctt agcattacag gcgtgtgtgg aaggggcggt
    14821 aaatcatctt tggaccatca gttgcttaca attacatcgc cgtggtatag tggtgtgtga
    14881 tgagccggca acccaagagc tgaaagttaa aacagttaag tatttcaaag agttagagaa
    14941 aaacgtagct cgctaattct gattttacaa gcggttaatt ttgtaatatt ttttacaaaa
    15001 acgaccgcct gttagcattt aaagagaaga gagaaaatga accattatgc cttaacaaac
    15061 tgtgtgattt acaccggtga acaagtgctt taccaacacg cattagtggt gaaagaagat
    15121 aaaatcgact ccattgtttt ggaagaaaat ttaccgctgg atctgcaaaa aatcgaccta
    15181 aaaggagcga atctttcagc cggttttatt gacttgcaac tgaacggctg cggtggggtg
    15241 atgtttaatg aagaaatcac tacccgcact ttagaaatta tgcaggaaac caatctgcgt
    15301 tcaggcacaa ccagctattt accgactttt attacctcgc ctgatgaggg agtgaaacaa
    15361 gcggtggcgg taatgcgtga gtatttgtcg aaacacaaaa accaagcact cggcttgcat
    15421 ttggaaggac cttatctaag tgtggcaaag aaaggagtac accgtccgga atttatccgt
    15481 gaaatcagcc ctgaaatgtt agatttctta tgcgataacg gcgatgtaat tacgaaaatc
    15541 acgattgcag cagaaaaccc gaccgcagac catatcaaac gctttaatga tgcaggaatt
    15601 attgtatcta tcgggcattc caatgccact tttgctcaaa ccaaacagcg aattgccgaa
    15661 ggggcagcgt ttgctacgca tttacacaat gcaatgtcgc cggtcagcaa cgggcgtgaa
    15721 ggcggtgtag taggggcggt gttggatagc gatatttaca ccggcattat ttgcgatggc
    15781 ttgcacgttg aatggggcaa cattcgcatt gccaaaaaag ccaaaggcga taaattagtg
    15841 attgtcagcg atgctgttgc tgccgcagga agtgatattg agtcgtttat ttttgtcggt
    15901 aaaaaagtca cggtgaaaga tggcaaatgc tacgatgaat tcggagcatt gggcggtgcg
    15961 gcaatcacga tgatcgaatc cattcgcaac gtagtgcaac attgcgatat tagcctgaat
    16021 gaagcaatcc gaatgagtac cctttacccg gcaaaagcga ttggggtaga ggaaacactc
    16081 ggctcacttg aagccggcaa aattgccaac cttgcgattt tcgataatca atttgaagta
    16141 aaagcgactg ctgtaaacgg gcaattacag tggcattaat tttgctacaa attctaagca
    16201 taacagcata taatccaaag gcaggcattg tgtctgcctt ttatttatag ggagaataac
    16261 atgcaattta aagattactt agccactttt ccaactattg atcatctagc cggcttaaac
    16321 gtgataaata gcggtgaagt gattcaacat attcctgcga ttgaaggtaa attaggttca
    16381 ctaaaacttt acaatgcact gtttgcgaaa tttgatggga aattaaccgc tagtgcagca
    16441 aaacaagggt tggaatggtt tgccgaacac gttgaagatg cgaaaaataa tgtgggtaag
    16501 cacccgaata ttgatctatt atttagggta attgagcaag atttatcttt aagtttagag
    16561 ccgattgtta aataagattg cactagtgaa aaataacaag cggtcattat ctgcaaaatt
    16621 tttgcaaata atgactgctt gtgtttaaga ggcttatttc acggtaatgc gtgcaaattt
    16681 gcgtttgccg acttggtaaa caaaagtgcc tttttgagca gtttgtttca catcttccac
    16741 tttttcacca tcaattttaa ccccgccttg ttgggctgag cgaattgcct ctgaagtgga
    16801 cggtactaag ccggcttctt tcagtagagc cgctaggccg atttcaccct caaaggtaaa
    16861 ttcaggcact tcatcaggaa ttgccccttt ttggaaacgg ttgataaact cttgctctgc
    16921 tgcatctgct gccgcttcat cgtggaaacg agcgataatt tcttttgcca gtagaatttt
    16981 cacatcacgc gggtttttgc cattttcaac atccgctttt aattgtgcaa tttcgtctaa
    17041 tggacggaat gagagcaggt tgtaccaatc ccacattaaa tcgtctgaaa tcgacataat
    17101 tttgccgaac atttcgcttg gagcttcagt tacaccaatg tagttgccga gagatttcga
    17161 catttttttc tcgccgtcta agccgacaag tagtgggagt gtcattgcca cttgtggttt
    17221 ttgaccggct gatttttgta actcacgtcc aactaacaag ttaaaggttt ggtctgtacc
    17281 acctaattcc acgtcagctt tcagttctac cgagtcgtga ccttgtagta gcggataaat
    17341 aaattcgtgg attgcgatcg gttgttggtt cgtgaaacgg tttttgaaat cttcacgttc
    17401 taacattcga gcaacggtgt agttggaggc taagcggatc ataccttccg tacctaactt
    17461 gcctaaccat tcggagttga atacgatctt ggttttttgt ggatctaaaa ttttgaagat
    17521 ctgctcttta taggtttcgg cattgcgtaa cacgtcttca cggctaagtg gcggacgggt
    17581 agagtttttt cctgatggat cgcctaccat accggtgaaa tcaccgatta agaaatagac
    17641 ttcgtgtccg aattgttgga attgacgaag tttgttcagc acaacagtat gacctaagtg
    17701 aatatccggt gcagttgggt ctgcccctaa tttaatacgc aatgggcggt tttcttttaa
    17761 tttggtgatt aaatcttctt ctgaataaat attttccacg ccacgtttaa gttcggcaag
    17821 gactgattcg atagcttgag tcatttatct tccttttagt cttgaatata aaaaatggat
    17881 ctattatagc ggtatgaatt gaaattgata ggctataggc gaaaaaaaac gccgtatttt
    17941 gtgggggaat acggcgtaaa gagttggagt gattacctat tatttttgaa gtgatttaat
    18001 gataatgatt atcatctgtt aagtcaatac tttttttgaa aattttcaat aagaattatt
    18061 ctcatcaatt aagtaagatg gatactacgg caattagtga agaatgtaca gcggaatttt
    18121 cgtattgtaa gagtgttggt aagcggtatt tttagaaaaa acctccgaga gcggttattt
    18181 ttcggaggtt ttttgcaaat gaggatttac atcgttgaaa tgtatttcaa catcaccccc
    18241 gctgcaatcg cagagccaat cacgccggca acgtttgggc ccattgcgtg cattaacaag
    18301 aagttttgtt tatcgtactc ttgtccgact ttgtttgata cccgtgcagc catcggcacg
    18361 gcagaaacac ccgctgagcc gataagtggg ttgattttgt gctgactaaa gcggttcatt
    18421 attttcgcca taatcacacc gcttgcagtg ccgatcccaa aggcaatcac gcccaatact
    18481 aaaatgccta gtgtttgcgg ttgtaagaat ttgtctgcga ccaattttgc ccccaccgat
    18541 aaccctaaga aaatcgtcac gatattgatt aacgcatttt gggcggtgtc gtttaagcgt
    18601 tctactacgc cactggttcg cagtaagttg ccaaagcaga acattcccaa taacggtgca
    18661 gcatccggca gtaagagtgc cactaataat agcaacacga tagggaaaat aattttctca
    18721 cggttgctta cattacggag ctgaaccatt cggattttac gttcttgctc ggtggttaag
    18781 gctttcataa tcggcggctg aatcagtggc actaacgcca tataagaata agccgctacc
    18841 gcaatcgcac ctaataattc aggggcaagt ttgctggcaa gataaatcgc ggtcgggcca
    18901 tctgccccgc cgataatccc aatcgcagcg gcttgtggca atgtgaagtc gataatgcct
    18961 aaccagttta gccctaatgc acccagtacg gtagcaaaaa tcccaaattg agccgcagcc
    19021 ccaagcatta acattcgagg gttggcaagt aaagggccga aatcagtcat cgccccgaca
    19081 cccataaaga taataagcgg agcaacgccg tagccgatag caactttata gaataatgcc
    19141 aacacaccgg cggtatagcc catatcgcca gccattactt caagctcatt ttgaacagag
    19201 ggagcagcca gtgcgatggc atctttaatc gaatgcagat caaggcttgt actatttacc
    19261 ttagcagcaa taattgccag ttgctcggca gaaccgctgt ggagtaaatt gtctaatgcc
    19321 gtcattgcca tacctgcttc cggaatgttt gacatcaaac caccaaagcc aataggcagt
    19381 agtaaaagcg gttcgaattt tcgggcgatg gcaagccaaa gcaacactaa actgatgaca
    19441 atcataatcg cttgccccag ttctaaatgc attagcccca tacctttaaa aagtgcaata
    19501 atactttcca taccggactc ctaggcaata ctcattaaag tatcatttac cgccacaaca
    19561 tcgccttgtt tgacattaat gccttgaatc gtgccggatt ttgccgcaca aatttgggtt
    19621 tccattttca ttgcttcaag aatcagtaac acatcgcctt cagcaacttg ttgcccctct
    19681 ttcacttcca ctttcaaaat gttccctgcc attggagcat tcaccggttc ggcattggct
    19741 gatagcgtat ttgcagattt tggtgcagaa tcgaccgctt gcggagccgg tgttgctggt
    19801 gttggagcga tattggttat atcgccacct tcactcacct tcaccacaaa ggctttgcct
    19861 tcaagctcaa cggtataaat ggctgaaccg gattgtgttt gggcttttgg tgcagaagca
    19921 gcggaggctt gtgccggttt tgcttcatca gcacttggca ctggctcaaa ggcagacgga
    19981 ttattgcggt tttccaaata tttccagccc acttgttgga agagtgccac aatcaataca
    20041 tcatcaatca tgttttcaga tagcgtaatg cctttttctt ttgcacttgc agtcacttct
    20101 gccactaatt tttccagttc cggcggaaga tgatcggctg ggcggtcggt aatcggctct
    20161 gctccctcaa gcactctgtc ttgcaaggct ttgtttaccg gtgccggtgt gcgaccatat
    20221 tcgcctttta aaatacctgc agtttctttg gcgatagttt tataacgttc gcccattaat
    20281 acgttcatca ccgcttgtgt gccgacaatt tgtgaggttg gtgtcaccaa cggaatattg
    20341 cctaaatctt cacgcacacg aggaatttct tgtaaaacca agtctaattt atccgacgca
    20401 ttttgttgct tgagttggct ttcgaggttg gtcagcatgc cacccggcac ttgggcaacc
    20461 aaaatacggc tatctatacc acggagctgt ccttcaaatt ttgcatattt tttacgcacg
    20521 ttacggaagt aggcagagat tttctccaga gctggaatgc tcaagccggt ttcatacggc
    20581 gtgccttgaa gtgtggcgac aatagactcg gttgccgggt gaccgtaagt gccggacatt
    20641 gatgaaatgg aggtatcgac accatcgaca ccggcttcaa tcgctttgag caacgccatt
    20701 tcagccatac cggtggttga atggcaatgg agatgtagct caacgtcgta gcgtttttta
    20761 atttcgctga ctaattcata ggctgccatt ggggttaaaa tgcccgacat atctttgatc
    20821 accaacgaat ccacgccaat ttccaataat tgctcggtta catccaacca cgtttgtagg
    20881 gtatgaacag ggctggtggt gtaactcaaa gtaccttgtg cgtgcccgcc gtgttttttg
    20941 accgcttgta atgcggcttg catattgcga gggtcgttga gggcatcaaa tacacggaac
    21001 acactcatac cgtttgccac cgaacgctcg acaaatttat ctaccacatc gtcggcataa
    21061 tgacgataac ccaataagtt ttgcccacgt agcagcattt gcattggggt tttcggcatt
    21121 gcttttttca gctcacgtaa acgcacccac ggatcttcgc ctaaaaaacg aatacaactg
    21181 tcaaaagttg ccccgcccca agtttctaac gaccaatagc cgatattatc cagctcggag
    21241 gcaatcggta acatatcgtc taagcgtaaa cgagtcgcaa aaagggattg gtgtgcatca
    21301 cgcaaaacca catcggtaat cgcaattttt ttcggttgag ttgtcataat caaattcctt
    21361 ctaattattt tatttttgaa atcttgttaa tgttgcccgt taattcgacg atgatgagca
    21421 atcgcagcgg caatcacagg gcgtaaacgc tctaaatcat ctgggggaga ttgaggcaca
    21481 gttttagagg ctggaataga aacaggttcg gggaaatatt gattgataat cttggaaata
    21541 aagctgatgg cataaattaa aaccagcagg aacagcataa caaatcccat tccggctacc
    21601 attaaattta taccttccgc aaagagttct gcaggtgcca taatttatcc ttaaaatgta
    21661 gaaatgatga agaaaatgta gaaaaaattc agatttattt caaattattt agcctcaaaa
    21721 tgagtggtag atcacaaact ttaaacgcaa gcggtcagat tttacaaatt ttttacaaga
    21781 gtagttaaaa tttgcaaaac ctgaccttag gttagcttga agctaagtcg ttatgccatt
    21841 agccccgaaa tatattttga aagggtcatt gcacttagca ccgccattag aatcaccaca
    21901 atcgcccctg aaacggtcat ccacacaggg tgtttgtagt cgcccacaat cttggttttg
    21961 tgagctgcca gcagaattaa cccgagggaa atcggtagaa ttaagccgtt aagcgtccct
    22021 acaaacacca agacttgtgc cggtctgccg atggttgcca gcacggcggt tgaaaccaca
    22081 ataaaggcga caatgaaaca gtttttgtgt ttttcgataa atggcgagaa tgaagtaatg
    22141 aaggaaaccg aggtataagc cgccccaatc acagaggtaa tggaggctgc ccaaatcacc
    22201 acgccgaaga tcatcaaacc gacatcgccg gcaacgtggg caaatggggt agccgcaggg
    22261 tttttcggat caagttgcac gcccattgac accacgccca gcaccgctaa aaacagtacc
    22321 acacgcataa ttgaggcgat taaaatggct gacaccgagc ttttgctcac ctcttttaaa
    22381 ttctctttgc ctttaatgcc tgcatcaagc aaacggtgcg caccagcaaa ggtgatgtat
    22441 ccaccaacag ttccgcccac tagcgtgaca atcgcaatca cgtctaattt ttccggcaca
    22501 aaggtatgca ccaccgcatc gtcgattggc agattggctt ttacggcaac gaagatggtt
    22561 aaagcaatca tcacaaagcc cataatttgt gcaaatctgt ccatcacttt accagcttca
    22621 tggaacagga acacgcccac ggcaatcgca ccgctgacca ccgcacccat ttcaggggaa
    22681 agtccggtga gaatgtttag ccctaaacct gcaccgccca cgttgccgat attaaaggct
    22741 aaaccgccca tcacgataag cagagccaga aagtaacctg cccccggcaa tacggcattg
    22801 gcgatgtctt gagctttctt ttccgatact gctacaattc gccaaatatt cagttgagca
    22861 ccgatatcaa gcaagatcga gagtaagatc acaaagccga agctggcaag tagggtttgg
    22921 gtgaaggtgg ctgtttgggt taagaacccc ggcccgatgg cggaggtcgc cattaaaaat
    22981 gctgccccga gtagggcgct acggttgttg tttgacattg tgttggttcc ttttttgttg
    23041 ttaatgagtc attattcgtg gatttatcat ggtaatattc ccctctttag caaagagggg
    23101 ttaggggaga tttggcagta gaactcatcg aagtgagaga gttaataatg ctcaatttaa
    23161 cctcttgaaa ttacttattt tctccgtaaa tcgcttctgt caaatctccc ccagcccctc
    23221 ttttctaaag aggggagttc gatctccaag agttttattt ctggttttcc gtccattttg
    23281 actaaaacag gatcaggctt tcaccaaaat cccctttgcc tgtaactctt ttttaattcg
    23341 ctcggcaaat accacggcgt gttcgccgtc accgtgtaag caaatgctgt cggctttaat
    23401 cgccacatta ccaccatcaa cggttggtac agtgccgtct aacaccattt gcaagacttg
    23461 gctgatcgct tcatcatcgc tttctaccat tgcatcatca cgggtgcgag gcacgagcga
    23521 gccgtcagct aaatagtggc ggtcggcaaa gacttcggaa atggtttcca aaccgtgctg
    23581 ctcggcaatg ctcaacatca ggctgccgga taagcccatc agtttgaggt tgggatcgaa
    23641 ctgtttgacc gtattggcga taagggtggc aaggtgaggg tctttggcgg ccatattgta
    23701 taaagcgccg tgcggtttaa cgtagctcat cggcatattt tccgcatcac ataaggcttt
    23761 ggcggctccc agttggtaga gcagacaggc tttaagttca tcatcgggca gttgcatatt
    23821 ggtacgccca aagttttccc tatctggaaa actcgggtga gcgccaactc gcacgctgtt
    23881 ttccttcgcc cagttaatcg ctttacgcat ttcattgtaa tcaccggcgt gcaagccaca
    23941 gcagacattc gccgaagtaa cgagctgtaa taatgaatga tcgttgccac aaccttcggc
    24001 aagatcgaca tttaaatcaa cgtgattcat tcgcttttct ccgaattgtt tccaaataat
    24061 tttgatcttt ttgataaatt tcgaccgctt gttcacggct tacttgctca aattgcaccg
    24121 ttgagccgaa cggattttgt gccaaccgcc cgagatcggc ctgaataatg caggcaattt
    24181 tcggataacc accggtggtt tgggcatctg ccatcagcac aatcggctgg ccgtccggcg
    24241 gcacttgcac cgtaccactc ggggctgcgt aggagagcat ttcaagggaa gcggtcaatt
    24301 ccaacgcttt ttctgcaaaa cggtagccca tacggttgct gttgttttgc agttgccacc
    24361 cttgttgcca aaagcgttca cggctatctg cggtaaaggc ttcatattcg ctcgaagcgg
    24421 ttgcccgaat gcgtgaggtg aaatcaatcg gctcaatcga catcaaagaa agtcggctgt
    24481 ctctgcggcc tgtggcgatg ttatcgccgg cttttaacat tctgccttga aaaccgccaa
    24541 attgagcttt gagagcggta cttgccgaac ctaacacctg cggcaccaga aaaccgcctg
    24601 ccacgcataa ataggcgtaa ttgccgagaa caatccgttt tatcgtcagc gtttgacggg
    24661 cgttggcagt gtagcggtaa taggaaaaaa ccggcgtgcc gtccagctcc gcctccacca
    24721 atgcaccggt gaggcaaaat ggcgtgtcgc aatcaaaggt aatccgcatt ccgccaaggg
    24781 taagttcaat cgcaggtgca ttatttgcat tttttaacaa taaattaccc gcttgtaagg
    24841 caaggctgtc catcgcaccg ccgtggctca cgcctaaatg gcgataacca taacgcccta
    24901 aatcttgaat gtgggcaaaa ccctgtatta tttcgatata aatcatagcg ttatactctc
    24961 cgccacaaat ctaacattat cgccggctgt aagtagcgtt ggcggattgt gttgaatatc
    25021 aaacaacggt aactcggttc gtcctaacag ttgccagcca cctggtgagg taaagggata
    25081 aatgcctgtt tgcctgccgc cgatgccgac cgaaccggca gggactttgg tgcgaggcac
    25141 gtttcggcgt ggggtgtgta aattttgcgg taagccgttg aggtaaggaa agccgggttg
    25201 aaagccgatc ataaacacgg tgtaagtcgg ttcggtatga cggcggataa tctcttcggg
    25261 agtggtattg tggaattggg cgacttcaaa cagatcttcg ccaaattcac cgccgtaatg
    25321 gacagggatt tcaatcaggc gtggggattg tgcggcttgg gcttggtcgt tttcccagag
    25381 ttgttgaacc gcttggataa ggcgtgtgct atcggtgcca atggcgtgaa atagggtaaa
    25441 attgttcatt cctaccacca cttccaacac gccatctaag gctcttgcct gttctgccac
    25501 ccgccaaatc tgttgctgtt tggcaagctc tgcaggcggt tcggctaagc agagcaggga
    25561 atgttcgctg gtatgatgaa tcgtcagcat aattgccctc aaattgttac aaaaaggtaa
    25621 caacttttta cgctgatata tccagactgt caattttatt ttgttgaaaa tgtgaaatag
    25681 ctcttaattt tcagaaattt gatcatttct tattcgccaa aacgttgcaa atctgggctt
    25741 gcctgattct gtgacacctc gatatttata ggtaatgatt gagccaatcg gtggcggatt
    25801 ttctcgttct ttatctttaa aaccgctgcc aatccgaaaa cgtccacgtt gattttcaca
    25861 agtgattgcc ccgagtttat cggtatattt ccctttgcct ttatgatggg caaccacagt
    25921 gcattcctca tctaaaaccg gtttgatttt caaaatttgg gcagaacgac cttgaatata
    25981 gcctgcattc gggttgcgaa cgataacccc ttcgccacct tgttccagca cagattggta
    26041 aaattgttga aggtgggctt tatctttaat cggaatttgc tcaataatag cgatatggag
    26101 cgttggatgt tgcttcagat aattctctaa ggtcgccagc cgttcaatca aattcccttg
    26161 tgcatttggc acatcgaaca cctgtaattt cagcttgtgc caacctttgg gctgagcgga
    26221 acgcacaatg cttgaaattt cctcaaattt gccccgttcg ctaaacagtt cgccgtcaat
    26281 cgcaaaagga gggaaatctt gaataaaata gtcgggtgga ttgagcggat aaccttggcg
    26341 gctgatgagc tgttgaccgt cccaaaagcc tcgcacgcca tcgagttttt ctgacattac
    26401 ccagccactg atgtcttgat cttgatattg ctcaacgagc attaactcgg gcgatttggc
    26461 aaaaataggg ttaccaatga agagtaggaa taagagcagt tttttcatag tctctccgaa
    26521 atagtgcctc cgaatatgca aggcactata aaggaaagcg tgcaaacagt cagaaatgaa
    26581 tctcaatttt tcgacgcaga tcgcaaaatt ttccgaaaaa ctgatcgctt gagtgagaaa
    26641 tttaacgtac tgtttgaatt aaagcagaaa tatcctcgct aaaggtttcc aacttcgcca
    26701 tttcttcaat ttggctatga gaatatttct tcacattgta aacgaccacc atacttacat
    26761 cacctacttg caataaatta ctttcgccaa aaggcgtgta gcgtgttgcc ccaatgctga
    26821 taatcgcttt agttgggtag tttgcctgtt ttaacatttc ggaaatgttg ttcatcggac
    26881 cttcatcggg ctgattattc attctctcta caatccaatc gagcaatttt tgatggaaat
    26941 agctgtactc caccgcaggg ctgtcgatgc cgtaggtatt cagctcgcca ttacgtttat
    27001 ggaaacaagc gatgttgtaa ttatccagcg tgccgccttt gttgaagtta tctaacggaa
    27061 gatgaattgc cgaaagccct ttagacgaag ccccccagtt tttcttttca cagattttat
    27121 tcgcattcgg acggcggata gagcagtcat tgtaagccgc aaaatgggtt ggcgtgagcg
    27181 aaaccacttg ctgatcttgg tagccaattt cacaaattaa cgccacttca ggctcaattt
    27241 gcagattatc agcatcactc gggaaattaa tcgcagtatt tgaaagcgga taggtggata
    27301 aaaactgata atcccccaaa ttttccgccg gcacataaaa cgggaaaatc gcctttggct
    27361 gcactgcttc cactgttttc actttcgcaa aatccgcctc ctctccggct tgttctaaat
    27421 gtccagcaaa attgccggcc acgcctaaac cgataaagtg ttccataatc tactccttaa
    27481 tt
//
LOCUS       DANMBQ010000018        27328 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.018, whole genome shotgun sequence.
ACCESSION   DANMBQ010000018 DANMBQ010000000
VERSION     DANMBQ010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 27328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27328
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.018"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(196..378)
                     /locus_tag="PXE92_000694"
     CDS             complement(196..378)
                     /locus_tag="PXE92_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759968.1"
                     /translation="MYQFGYLRTKIGTDTQRAMLWNCPTYVLIIPFLLNTSVKKQYHA
                     FWQKYHQHNNDVSFPY"
     gene            528..1568
                     /gene="selD"
                     /locus_tag="PXE92_000695"
     CDS             528..1568
                     /gene="selD"
                     /locus_tag="PXE92_000695"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020909986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:573..575,aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HDL5759969.1"
                     /translation="MSEPIKLTQFSHGAGUGCKISPKVLGTILQTQLEQFVDPNLLVG
                     NETADDAAVYDLGNGQAIISTTDFFMPIVDAPFDFGRIAAANAISDIYAMGGKPIMAI
                     AILGFPVNKLPAEVAQQIVEGGRFACQQAGIALAGGHSIDSPDPIFGLAVTGIVPTER
                     VKRNASAVAGCELFLTKPLGIGILTTAEKKGLLKPEHQHLASEVMCQINLIGSAFSEL
                     PEVTAMTDVTGFGLLGHLSEVCQGSGLRAEVDFEDIQVLDGTKEYIALGAVPGGTNRN
                     FDSYGHLISAMTDEQKAILCDPQTSGGLLVAVLPQAVEKVQQIANRANVPLFHVGRLL
                     EMEQGKPRIEVI"
     gene            1568..2041
                     /locus_tag="PXE92_000696"
     CDS             1568..2041
                     /locus_tag="PXE92_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HDL5759970.1"
                     /translation="MFKPNVTMACVVHCKGKFLFVEEIEYGKRTLNQPAGHLEKDETL
                     LEGASRELFEETGIRAEMANLVKIYQWQAPRSQTDFLRFLFSVELEEWLEPNPQDADI
                     TQALWLTLAEFEDYIQQQGQCARSPLVVQSVKDYLSGERYPLSLLNAFEWARNGK"
     gene            2031..3239
                     /gene="ubiH"
                     /locus_tag="PXE92_000697"
                     /gene_synonym="visB"
     CDS             2031..3239
                     /gene="ubiH"
                     /locus_tag="PXE92_000697"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HDL5759971.1"
                     /translation="MENKTTTQFDVVIVGGAVTGSVLALALSSFTHHKISIAIVEKSL
                     PDYEQQGGFDARSIALAEGSLQKMGQIRPLAGSSLGEMISEIGTPIQQIQVADKGHFG
                     KTTLKASEQNVAQLGMVVELAKFGRKLTACLAQQANITLFCPNQVVGIERSQQHCGLS
                     LKNGEKLSCSLLVAADGIQSQIAKQCGVETVKVRDYAQSAIIANVELSESHQNQAFEY
                     FTPQGPFALLPLSGNMMSLVWCVKEPNELIQLSDSEFLARLQQQFGWKLGQFVRVSKR
                     FVYPLILQKAQSHIHHRLAVVGNAAQMLHPVAGQGFNLGLRDLTTLAELVALAFNQGK
                     DIGEFSLLSTFENERTQDQARMINATSGLISLFCCEMLPVQVVRNLGLLTVSHSKIAR
                     DFVANQALGW"
     gene            3502..4734
                     /locus_tag="PXE92_000698"
     CDS             3502..4734
                     /locus_tag="PXE92_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease"
                     /protein_id="HDL5759972.1"
                     /translation="MTTENMSTPKQAFIGLQMLFVAFGALVLVPLITGLDPNVALLTA
                     GVGTLIFQICTKRQVPVFLASSFAFIAPIQFGVQQWGIPVTMGALLCSGFIYMALSAL
                     VKAKGVNILHKYFPPIVIGPVIMVIGLGLAPVAVDMATGKSANIAYNTAIIVSMITLV
                     TTLIVAVFAKGLLKLVPILAGLTVGYILSVFMGLVDFTKVVEAPWFSLPKVSAPEFKL
                     DAILYLLPIALAPAVEHLGDVMAISQVAGKDFMKKPGLHRTLLGDGLATSAAAALGGP
                     PNTTYSEVTGAVMLTKNFNPKIMTWAACWAIAFSFCGKIGAFLATIPTFVMGGIMMLL
                     FGAVAVVGINTLIKAKVDLSIPRNLCIASVVMTFGIGGMLINIGEFSLKGISLCALVA
                     IVLNIVLPKEKVEDSAAH"
     gene            4801..5787
                     /locus_tag="PXE92_000699"
     CDS             4801..5787
                     /locus_tag="PXE92_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL5759973.1"
                     /translation="MQKLTFSPPLLNTPCPWCSELESLRELYACEYTGAVTTRTSMPQ
                     PYPHDWAKNQYVLFDSNAQKTASVNTQDATSLQTASLNTIGLSPNNLDTTISFVRTIS
                     NELTAPSSKPFIISVFGSPEEVGECYEKIVAFQTEVKMPLAMEINISCPNIPGEISPA
                     YSAEELSHYLHALQTSLKKLAQGDNTLPIGIKIPPFTYQNQYDELIKGLLQAVENGEN
                     LPISFITSTNTLGSSLVLNAGKAVLNSEVGTGVGGMAGTAIHALSLGNVYTIRQMLDQ
                     EPKLKHLQIIGVGGVNDKAGFERMKSVGADFVGLATALGVKGIGVFKEILSE"
     gene            complement(5828..6238)
                     /locus_tag="PXE92_000700"
     CDS             complement(5828..6238)
                     /locus_tag="PXE92_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="HDL5759974.1"
                     /translation="MLYSVLTAHILLNEPYRNGAHSTQHEHLVVMFEIDEESGYFYAM
                     DLHQTEQPVVDSLFVFRVSDIEQNSLKEPRRLEICWSEDGYQAFLLINGYPHAVFDFR
                     QFVGYNHTKFPMPELGSMWVHKETTNELVEKWLG"
     gene            complement(6304..7614)
                     /gene="eno"
                     /locus_tag="PXE92_000701"
     CDS             complement(6304..7614)
                     /gene="eno"
                     /locus_tag="PXE92_000701"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDL5759975.1"
                     /translation="MAKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTG
                     SREALELRDGDKGRFLGKGVLKAVSAVNNEIANALVGKDGSAQAEIDQIMIDLDGTEN
                     KSKFGANAILAVSLATAKAAAASKGLPLYAYIAELNGTPGVYSMPLPMMNIINGGEHA
                     DNNVDIQEFMIQPVGASTLKEALRIGAEVFHNLAKVLKAKGLNTAVGDEGGFAPNLAS
                     NADALACIKEAVEKAGYVLGKDVTLAMDCASSEFYDKERNVYDMKGEGKTFTSQEFTH
                     YLEGLCKEYPIVSIEDGQDESDWEGFAYQTKVLGDKVQLVGDDLFVTNTKILKNGIEK
                     GIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQ
                     IKTGSMSRSDRVAKYNQLIRIEEALERAGTPAPFNGRKEIKGQA"
     gene            complement(7805..8983)
                     /gene="rlmC"
                     /locus_tag="PXE92_000702"
     CDS             complement(7805..8983)
                     /gene="rlmC"
                     /locus_tag="PXE92_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
                     /protein_id="HDL5759976.1"
                     /translation="MSSLLHCSHFERGDCTSCQWIEKPYSTQLAAKEADLKRLILPFI
                     LQNKTEILPLVGSPISQFRNKAKMVVSGSVERPILGILKDQNDAQSGVDLTDCLLYPS
                     SFHRLFPILKDFIARAGLVPYNISKKKGELKYILITESQYNQSFMLRFVVRSEAKRAL
                     VERELPELLEKLPPNSVVSLNIQPQHAALLEGETEIFLTEQKVLEEHFNGIPLFIRPQ
                     GFFQTNPVVASQLYHTAQSWIEHLPIAKLWDLFCGVGGFGLHCANALQAKNSNVELTG
                     IEISASAIASATKSAEKLGLKQVKFASLDSAQFALNEAGSPPDLVIVNPPRRGIGKLL
                     AEFLNQLGSPYLIYSSCNAVSMANDFTFLTNYELHKVQLFDMFAHTAHYETLTFLVKK
                     "
     gene            complement(8976..10013)
                     /gene="nagZ"
                     /locus_tag="PXE92_000703"
     CDS             complement(8976..10013)
                     /gene="nagZ"
                     /locus_tag="PXE92_000703"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HDL5759977.1"
                     /translation="MLLIDIKDKELTQEEVEMLEHPLVSGLILFTRNFYDKAQIQALV
                     KSIRQRVKKPLLITVDQEGGRVQRFREGFTKLPAMQSFNQLATTPEQAMQLAKETGWL
                     MAAEMFALDIDLSFAPVLDLGHECKAIGDRSFGQEPAAILPVAEAFIDGMREIGMATT
                     GKHFPGHGHVLADSHLETPFDDRPKERIFNHDILPFKQLIAKGKLSAIMPAHVVYTQC
                     DSQPASGSSYWLKEVLRKQLNFNGVIFSDDLGMKGAGFMGNFVERSEKAIQAGCDLLL
                     LCNEPEGLVQVLDGLKYQPTQAQKERRLSLMKRKTVTWRELENSSRYQQTQAELTALQ
                     NNWLEWKEANV"
     gene            complement(10139..10870)
                     /locus_tag="PXE92_000704"
     CDS             complement(10139..10870)
                     /locus_tag="PXE92_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDL5759978.1"
                     /translation="MFDWITNPEAWVALFTLTGLEIVLGIDNIIVISILVSRLPIEQR
                     QSARIIGLGLAMGTRILLLLSLAWMMRLVEPLFTIGNNPISGRDLILLIGGLFLIVKS
                     AMELKESISAESHEEKSESIKKASFFMVLIQIAIFDIIFSLDSVITAVAMADDIPVMV
                     IAIIIAVAVMMLAAKTIGDFVDNNPTIKNLALAFLILIGIVLVGEGFDIHIPKAAVYT
                     AMGFSVVVEMLNIKMRRNQAKLEQA"
     gene            complement(10959..11639)
                     /gene="mutH"
                     /locus_tag="PXE92_000705"
     CDS             complement(10959..11639)
                     /gene="mutH"
                     /locus_tag="PXE92_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HDL5759979.1"
                     /translation="MQLSTFSPTEQALLSKAEWLAGFTLGEIAEMLHIPIPADLKRDK
                     GWVGTLIETALGAKAGSKAEQDFAHLGIELKTIPVNQKGLPLETTFVSLAPLTQNNGI
                     IWETSHVKHKLSRVLWIPVEGERKIPLAERHIGQPILWSPTITQESRLQQDWEELMEL
                     IVLGELHKINATLGEVLQLRPKGRNNRSITSAINAKGEIVQSLPLGFYLRKHFTAEIL
                     QNFLHCPL"
     gene            complement(11731..12366)
                     /gene="lexA"
                     /locus_tag="PXE92_000706"
     CDS             complement(11731..12366)
                     /gene="lexA"
                     /locus_tag="PXE92_000706"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HDL5759980.1"
                     /translation="MRKHLTARQQEIFDFVKNHIETTGMPPTRVEIAREIGFKSPNAA
                     EEHLKALARKGYIEMLSGTSRGIRILVEDENQAANDEDEGLPLIGKVAAGTPILAVEH
                     VENHYPVNGAMFNPSADYLLKVNGNSMEKIGILDGDLLAVHKTNTARNGQVVVARVND
                     EVTVKRLEKKGELIYLHPENDELKPIVVNPAQEYIEIEGIAVGVIRSNAWM"
     gene            12533..14968
                     /gene="plsB"
                     /locus_tag="PXE92_000707"
     CDS             12533..14968
                     /gene="plsB"
                     /locus_tag="PXE92_000707"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HDL5759981.1"
                     /translation="MSGLLNFYRAFLNLPLSLLVKSRSIPTHPVAELELNLEQPIVYV
                     LPYTSQTDLLILQKNCLALNLPDPLQENVIEGQTLLRFVFLDEGRRFFKSKGAKSETE
                     SIFYRYLDLHRANAELDVQLVPVSVLWGRAPGKEDARHLQVLTSFQRFLSMVWFGRDN
                     FVRFSPAVSLRYMVTEYGADEKIAQKIARVAKMHFAKLRYSAMGPRLPNRDAMFNKIL
                     NSEVIQAAIAEEAKKSSPEKARKEAEKIINEIAADVKHESLRVADRVLSWLWNKLYQG
                     INVQNADRVRKLALEGHEIVYVPCHRSHMDYLLLSYLLYHQGLVPPHIAAGINLNFWP
                     AGPIFRSWGAFFIRRTFKGNRLYSTIFREYLAELFYRGYSVEYFIEGGRSRTGRLLEP
                     KTGMMSMSLQALQRGLNRSLSIVPVYIGYEHVLEVDTYAKELRGAAKEKENAGLVLRV
                     LKKLKNLGQGYVNFGEPILVNNYLNQYFPEWKEPSEDGRPKWLNEAVDNISHQVMVNI
                     NKAAAVNAKNLVGSALLASRQRALTREQLIEQLGSYIQLFRNVPYSKDMTLPTESAEV
                     MLNHVIHLPRSGVLIEKDNFGELVRLERESAVLMTYYRNNVQHLFVLPSLVASMVLHH
                     EAVSKDVVIKSVNRIYPFLQAELFLHFKQEELKAHIEAIIAELSRQGVIKNESDMLMI
                     NRSHIRTLQLHSAGVREILQRYYISLSVLLEQPNISRGYLEKESSSIAQRLSVLHGIN
                     APEFFDKAIFSTFTSSLKAQGYFDGDDNLAIAKVKETESLLRSLISIEVQQTIQGAMA
                     KVAESVENPNIAG"
     gene            complement(15073..15636)
                     /locus_tag="PXE92_000708"
     CDS             complement(15073..15636)
                     /locus_tag="PXE92_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HDL5759982.1"
                     /translation="MSAPNSGTNPAPLGLCGFALTTFLLSLINNGTFSGENVGLVLAM
                     GFAFGGTSQMIAGMFEFAKGNTFGFTAFTSYGAFWWSFALFKVFFAANVSAEFVGWYL
                     VAWGTFTLMMFIGTLAKARALQAIFLSLTITFYLLAAGDFTHNTTLTNIGGNFGLLTA
                     FLAFYLAAADIINESFGKTVLPIGEPK"
     gene            complement(15834..16730)
                     /locus_tag="PXE92_000709"
     CDS             complement(15834..16730)
                     /locus_tag="PXE92_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5759983.1"
                     /translation="MDILDRLLAFAQISAGISVKCQLQGDWQLENPHQTGQAIAHIIS
                     YGQAYLQHNGKTHHLKQGDIVFFPRFADHTLRSQIQPLTSKNAVNPEQLGAFTLTQAG
                     LSQSECDMFCLHFYYDHQAELMESLPEMIVFQVAETPLKAMLDILKQEAETPNLAVKS
                     VVNSLAVVILTMILREHLVNHNNQLFGILKGWQDLHLRPLIKAILLNPEHEWQVDDMA
                     AFIHLSRAQLVRLFNKHLCISPHAFVHKIRLQKAAMLLKSQAGSVLSIALSCGFQSES
                     HFITAFKKQYCVTPSQYRQLNP"
     gene            16866..17207
                     /locus_tag="PXE92_000710"
     CDS             16866..17207
                     /locus_tag="PXE92_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL5759984.1"
                     /translation="MSSFQNWTEHTAHVKQSFGKLGQKHPKMLEAYKALGTAAAAEAL
                     DHKTRELIALAVAITTRCESCISVHAEEAAKAGATESEIAGALATAIALNAGAAYTYA
                     LRALEAVEEQK"
     gene            17218..17571
                     /locus_tag="PXE92_000711"
     CDS             17218..17571
                     /locus_tag="PXE92_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL5759985.1"
                     /translation="MKKLAWILGFAAMMPMMSSAKQASVQQVQAEKAAGIWIDVRSAE
                     EFQQGHLNGAINVTHTEIAQRIAEVAPDKNQPIHLYCRSGHRAEAALNELKKLGYSNV
                     TNHGGYDDLIKAGLK"
     gene            17631..18269
                     /locus_tag="PXE92_000712"
     CDS             17631..18269
                     /locus_tag="PXE92_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgB family protein"
                     /protein_id="HDL5759986.1"
                     /translation="MSAFNNFVNFVANIVAPMQRQFINFVRIAICIVMVWIGGLKVCQ
                     YEADGIAHFVSNSPFFSYMYKKGPNLVDDGTGKMVMEYTLHKNPEGKMVAKNIEWHKE
                     NGTYTASYIIGATIVTVGLLTLSGIWFPVSGMAGGLLTFGMSIVTLSFMITTPEIWVP
                     NLGGDMPTPAHGFPYLSAVGRLIVKDVIMMAGGLVAAAECANRILARRKAIA"
     gene            18404..19585
                     /gene="purT"
                     /locus_tag="PXE92_000713"
     CDS             18404..19585
                     /gene="purT"
                     /locus_tag="PXE92_000713"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HDL5759987.1"
                     /translation="MTTIGTPLRTNATKVMMLGSGELGKEVVIELQRLGVEVIAVDRY
                     DNAPAQQVAHRAYTISMLDGNALRDLVEKEKPDFIVPEVEAIATATLVELEQEGYNVI
                     PTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNFEQFQQAIQEIGIPCVVKPIMSS
                     SGHGQSVIKSEADIQQAWDYSQQGGRAGGGRVIVEGFIKFDYEITQLTVRHIHGTSFL
                     APIGHIQVDGDYRESWQPQQMSDIALKKAQETAEKITSALGGRGIFGVELFVCGDEII
                     FNEVSPRPHDTGIVTMASQELSQFALHARAILGLPIPEIYRISPAASKAIVVEGKSDN
                     VRFGGVDKVLAEIGTNIRLFGKGEVNGHRRLGVILARDENTVRALEKARRAYDKLDIQ
                     L"
     gene            complement(19677..21170)
                     /locus_tag="PXE92_000714"
     CDS             complement(19677..21170)
                     /locus_tag="PXE92_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005556599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL5759988.1"
                     /translation="MFKQLQQVGKAFMLPIAILPAAGLLLGIGGALSNKATVQAYPIL
                     DNPTLQGIFQIMASAGSVVFGNLALLLCIGLGIGLAKRDKGVAALAAVVGYLIMTGTI
                     SALIPLFPPETKGIDTGVIGSLVMGLITVKLHNKYHNIQLPQILGFFGGSRFVPIVTA
                     FAAIFVGAVFFLIWPAFQQWLVSAGQGIAEMGEIGTFFYGFLMRLSGAVGLHHMIYPL
                     FWYTELGGTEVVNGETIIGAQKIFFAQLADPTHQGLFTEGTRFFAGRFDTMMFGLPAA
                     CLAMYHAVPKARRGAISGLFLGAALTSFITGITEPIEFMFLFVAPWLYVFHAFLDGVS
                     FYIADLLNISIGNTFSGGVIDFTLFGILQGNENTNWLRVIIVGLPWAALYYFSFLFLI
                     KKFNVMTPGRAEESEEVVEQQTSSLTENAHKIIAALGSANNIENVDACITRLRVAVKE
                     VKAVDKATLKKLGAIDVLEVGGGVQAVFGAKAVLYKSEVNQILGKED"
     gene            21371..23218
                     /gene="ilvD"
                     /locus_tag="PXE92_000715"
     CDS             21371..23218
                     /gene="ilvD"
                     /locus_tag="PXE92_000715"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012055207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDL5759989.1"
                     /translation="MPILRSATSTQGRNMAGARALWRATGMKENDFGKPIIAVVNSFT
                     QFVPGHVHLKDMGQLVAAEIEKAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPTIFVSGGPMEAGKTKLSDQLI
                     RLDLVDAMIESADPNVSDERIDAIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGN
                     GSMLATHADRKELFLRAGREIVELCRKYYQQDDESVLPRSIATFDAFENAMSLDIAMG
                     GSSNTVLHLLATAQEAGVDFKMEDIDRLSRVVPCLSKIAPNTNKYHMEDVHRAGGIMG
                     LLGELDRAGLIHRHVKTVLGLTIEEQLNQYDIIRNKDEDLHKFFRAGPAGIRTTKAFS
                     QDCRWDTVDDDRVNGCIRNVENAVTKEGGLAVLFGNIAEDGCIVKTAGVDESIWKFTG
                     TAIVFESQEDAVAGILGGKVKEGHIVIIRYEGPKGGPGMQEMLYPTSYLKSMGLGKKC
                     ALLTDGRFSGGTSGLSIGHASPEAASGGAIALINDGDTVAIDIPNRSINLMVSDEELA
                     ARRAEMEARGDKAWQPLKREREVSFALKVFGHFATSADKGAVRDKSLLK"
     gene            complement(23352..23702)
                     /locus_tag="PXE92_000716"
     CDS             complement(23352..23702)
                     /locus_tag="PXE92_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TusE/DsrC/DsvC family sulfur relay protein"
                     /protein_id="HDL5759990.1"
                     /translation="MWHFYLMTIELNNIQYPTDASGYLTNLNDWSVELAEKIAEKEQI
                     SLTAEHWEIIYLVRDFYQEYKTSPAIRMLVKTMAQKFGEEKGNSRYLQRLFPDGPAKQ
                     ATKIAGLPKPAKCL"
     gene            complement(23731..24396)
                     /locus_tag="PXE92_000717"
     CDS             complement(23731..24396)
                     /locus_tag="PXE92_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BAX inhibitor protein"
                     /protein_id="HDL5759991.1"
                     /translation="MENRLAHSYSTGESLISTHKVLRNTYMLLAMTLTFSAVVAFVAI
                     QMNAPAMPWWGLLVGFYGLLFLTNATSNSSAGILSVFALTGFLGYTLGPILNRYIGAG
                     LGDIVALAFGATALVFFACSAYVLTTKKDMSFISGMMVALFVVLLVGIIANIFLAIPA
                     LSLALSSLFVIFSSGAILLATSNIIHGGETNYIRATVDLYVSIYNLFVSFLQIFGVLG
                     SDD"
     gene            24602..25150
                     /gene="pgsA"
                     /locus_tag="PXE92_000718"
     CDS             24602..25150
                     /gene="pgsA"
                     /locus_tag="PXE92_000718"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDL5759992.1"
                     /translation="MKLNFPTYLTLFRVGLTPLFIVAFYLPTKYAPEISTLIFFIASI
                     TDAFDGYLARKWNQTTRLGAFLDPVADKVLVAVAFVCVAEYYHTWWITIPICIMIARE
                     IIISALREWMAELGERASVAVSIWGKVKTTAQMLALGGMLWRQNQLMEILAFILLYIA
                     VGLTIWSMMQYLNASKNSLLKS"
     gene            25228..27066
                     /gene="uvrC"
                     /locus_tag="PXE92_000719"
     CDS             25228..27066
                     /gene="uvrC"
                     /locus_tag="PXE92_000719"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDL5759993.1"
                     /translation="MSEFNAKSFLLNVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLAS
                     YFRSQLSSKKTEALVANLANIETTITHSETEALLLEHNYIKENQPKYNVLLRDDKSYP
                     YILLTKHKHPRLTAFRGSKKIAGEYFGPYPNVTAVRETLNLLQKIFPIRQCEDTYYKN
                     RSRPCLQYQIGRCLAPCVEGCYSPVEYDQQVNLVRLFLQGKDHQVVEHLVQKMEDAAE
                     ALDFEGAARFRDQIQSVRAVQEKQFVSNDRLDDLDIISIVYQNGIACVHILFVRQGKV
                     LGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQHRTIPNQIVIDHQLSESKALSEILS
                     EQAGHKVSILDNAIRGDKQRYLALARTNAMAALVLQLKQESHIQSRYQALKEMLKMSE
                     IKRMECFDISHTMGNQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKR
                     YNRELPPEKIPDIIFIDGGKGQLNRALDVFAKLDVEWDKSKPLLIGVAKGVERKAGLE
                     TLIISKWDKEIHLPPDSLALHLIQHIRDESHQHAISGHRKKRQKAFTESGLESIAGVG
                     AKRRQALLKYLGGMQGVKSATLEEIQSVPGISKALAEVIFDTLKNS"
     gene            complement(27071..27268)
                     /locus_tag="PXE92_000720"
     CDS             complement(27071..27268)
                     /locus_tag="PXE92_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5759994.1"
                     /translation="MDMQAVQDYHQRVINKQTVDKNTKQHDEPLNQSDKRSESINLPI
                     HPIIYPSIGVGYHYGWKRYRY"
BASE COUNT         7866 a         5330 c         6129 g         8003 t
ORIGIN      
        1 gactgtcaga tcaagtctga tcttctacaa ctaagccttc tcagaataaa taaattttca
       61 caagcggtgc aactttgcaa aaacttcggt attatgtagc agttgcacaa aaccccaaat
      121 tcattaaaac cgcttaaaaa tgaaatgccc taaactgatt tttcagtcta gggcatttat
      181 tatcacatat tatggttaat agggaaaact cacatcattg ttatgctggt gatatttttg
      241 ccaaaatgcg tgatattgtt ttttcaccga tgtgtttaat aaaaacggga ttatcaagac
      301 ataggtcggg caattccata gcattgcacg ttgtgtatcc gtgccgattt tggtgcgtaa
      361 gtaaccaaac tgatacatta gacccaatcc aaccgtcacc tattctaata gcataataac
      421 taaggtcgca tcattaaatt aaaagctcat tttttgcaaa aaatttccca aattccaccg
      481 cttgttggcg tacaataggc ataattttga tttacgatgg aggcagaatg tctgaaccga
      541 taaaacttac gcagttcagc cacggggcgg gttgaggctg taaaatttcg cctaaggtgt
      601 tagggacaat tttacaaact caattagaac aatttgtcga tccgaattta ttggtaggca
      661 atgaaacggc ggacgatgct gccgtctatg atttagggaa cgggcaggcc attatcagca
      721 ccaccgattt ctttatgccg attgtggacg ccccgtttga tttcgggcga attgctgctg
      781 ccaatgcgat tagcgatatt tatgcgatgg gtggcaagcc gattatggcg attgcgattc
      841 tgggctttcc ggtgaataaa ttgccggctg aagtggctca acaaattgtc gaaggtgggc
      901 gttttgcgtg ccagcaagcc ggtattgcct tggcgggcgg gcattcgatt gattcgcccg
      961 atccgatttt cggcttggct gttaccggca ttgtgccgac cgaacgggtg aaacgcaatg
     1021 cctctgcggt ggctgggtgt gagctgtttt taaccaagcc tttggggatt ggcattctaa
     1081 ccacggcaga gaaaaaaggt ttgttgaagc ctgaacatca acatctggca agcgaggtaa
     1141 tgtgccaaat caacttgatt ggttcagcgt tttccgaact gcctgaagtc acggcaatga
     1201 ctgatgtaac cggttttggc ttactcgggc atttaagcga ggtgtgtcaa ggctcgggct
     1261 tacgggcgga ggttgatttt gaggatattc aagtccttga tggcactaag gagtatattg
     1321 cattgggagc agttccgggt gggacaaatc gcaatttcga cagctatggg catttgattt
     1381 cggcaatgac ggacgagcaa aaagcgattt tgtgcgatcc gcaaacctct ggcggtttat
     1441 tagtggcggt gctgccacaa gcggtcgaaa aagtgcaaca aattgcaaat cgggcaaatg
     1501 tgccgttatt ccacgttggc agattgctgg aaatggaaca gggcaaacca cggattgagg
     1561 taatttgatg tttaaaccaa atgtaacaat ggcttgcgtg gtgcattgta agggaaagtt
     1621 tctgtttgtg gaagaaattg aatatggcaa acgtaccctt aaccagccgg cagggcattt
     1681 agaaaaagat gaaaccttgc tggagggggc aagccgtgag ctgtttgagg aaaccggtat
     1741 tcgggcagaa atggcaaatt tggtgaaaat ttatcaatgg caagcccctc gttcacaaac
     1801 cgatttcttg cgttttctgt tttcggtgga actggaagag tggctggagc cgaatccgca
     1861 agatgcggat attacccaag ccctttggct tactttagca gaatttgaag actacattca
     1921 gcaacaaggg caatgtgcca gaagcccgtt ggtggttcaa tcggtcaaag attatttaag
     1981 cggtgagcgt tatccattaa gtttgttgaa tgcgtttgaa tgggcgagaa atggaaaata
     2041 aaacaacaac ccaatttgat gtggtgattg tgggcggggc agtgaccggc tcggtgctgg
     2101 cattggcgtt aagtagtttt actcatcaca aaatctcgat tgcgatagtg gaaaaatcgc
     2161 tgccggacta tgaacagcaa ggcggttttg atgctcgcag tattgcctta gccgaaggca
     2221 gtttgcaaaa aatggggcaa atcagaccgc ttgcaggctc aagtttaggc gagatgatta
     2281 gcgaaatcgg cacgccgatt cagcaaattc aagtagcgga taaagggcat tttggtaaaa
     2341 cgaccttgaa agcaagcgag cagaatgtgg ctcaactggg tatggtggtg gaacttgcaa
     2401 aattcggcag aaaattgacc gcttgtcttg cacagcaagc taatattacg cttttttgcc
     2461 cgaatcaagt ggttggcatt gagcgttccc aacaacattg tggattgagc ttgaaaaatg
     2521 gtgagaaact aagctgttcc ttgctggtgg cggcagatgg tattcaatct cagattgcaa
     2581 aacagtgcgg tgtggaaacc gtaaaagtaa gggattatgc acaatcggca attatcgcca
     2641 atgtggaact gagtgaatct caccaaaatc aagcctttga atattttacg cctcaaggcc
     2701 cttttgcttt attgcctttg agcggaaata tgatgtcgtt ggtgtggtgt gtgaaagagc
     2761 cgaacgagtt aatccaactt tcagacagtg aatttttagc ccgtttgcaa caacaatttg
     2821 gttggaagtt agggcaattt gttcgagtga gcaagcggtt tgtttatccg ctcattttgc
     2881 aaaaagccca gtcgcatatt caccaccgct tagcagttgt cggcaatgcc gcacaaatgc
     2941 ttcacccggt tgctgggcaa ggtttcaact taggcttgcg tgatttgact accttagcgg
     3001 aattagtggc tttggcgttt aatcaaggga aagatatagg cgaattttcg ctcttatcaa
     3061 cttttgagaa tgagagaacg caagatcaag ccagaatgat aaatgctaca agcggtctga
     3121 tttcgctttt ttgttgcgaa atgttaccag ttcaggttgt gaggaattta gggttattaa
     3181 cggtttccca ttcaaaaata gccagagatt ttgttgctaa tcaggcatta ggttggtaaa
     3241 aaacacaaaa gcagcaattt tctatttgac actgttttta aaaaggcgta ttatccaacc
     3301 cgtttaaaaa tctcaccaaa gccttgaatg caaattcaag gctttttcct ttttagtgaa
     3361 agcctatgaa ttttgtttgc cgtaaaatcg gcaaaaaaat tttgcctaaa attcgcaatc
     3421 gtttgcgaaa taggtttata gcgttgtttt catctgggta actgcaatgg ttacatcgca
     3481 atacatcaaa gagagtaaaa aatgaccaca gaaaatatga gtacgccaaa gcaggcgttt
     3541 atcgggctgc aaatgctgtt tgttgcattt ggggcgttag tattagttcc gctgattacc
     3601 ggtttagatc ctaatgttgc ccttcttacc gccggtgtcg gtacgttaat cttccaaatt
     3661 tgtactaaac gtcaagttcc tgttttcctc gcatcgagtt tcgcttttat cgctccaatc
     3721 caattcggtg ttcaacaatg gggaattccc gtcacaatgg gagcattgct ctgttccggt
     3781 tttatttata tggcattatc tgctttagtg aaagcgaaag gggtgaatat tctgcataaa
     3841 tacttccctc caatcgtgat tggaccggta attatggtga ttggtttagg tcttgctcct
     3901 gttgcggtgg atatggcaac gggtaaatcg gcgaatattg cctataacac cgctattatt
     3961 gtttcaatga taacgctggt aactacgctg attgtggcgg tgtttgcgaa agggctatta
     4021 aagctcgtgc caatattagc aggtttaacg gtgggatata tcttgtctgt ttttatggga
     4081 ttggtggatt ttactaaagt ggttgaagct ccttggttta gtctaccgaa agtttccgca
     4141 ccggaattca aattagatgc aatcttgtat ttattaccta tcgcacttgc tccggcagtc
     4201 gaacacttag gcgatgtaat ggcaatcagc caagttgccg gtaaagattt tatgaaaaaa
     4261 ccggggttac accgcacgct tttaggtgat ggtttagcaa cttcagcagc tgcggcatta
     4321 ggtggcccac caaatacgac ttactctgaa gtaaccggtg cggtaatgct aaccaaaaac
     4381 ttcaatccga aaattatgac ttgggctgcg tgctgggcta tcgctttctc attctgcgga
     4441 aaaatcgggg cattccttgc cactatccct acttttgtga tgggcggtat tatgatgttg
     4501 ctgttcggtg cagttgcggt tgtggggatc aatactctaa ttaaagctaa agttgattta
     4561 agcattccac gtaatctttg tattgcttct gtagtaatga cattcggtat tggcggtatg
     4621 ttaattaaca tcggcgaatt ctcattaaaa gggatcagct tgtgtgcatt agtcgctatt
     4681 gtacttaaca ttgtattacc aaaagaaaaa gtagaagatt ctgctgctca ttaatcaaag
     4741 gacgctgtgg cgtccttttt gctaataacc ctctatttgt aaataaaaag gaataacact
     4801 atgcaaaaac tcacattttc accaccactt ttaaatacgc cttgcccttg gtgttcggag
     4861 ttagagagct tgcgtgaact ttatgcgtgt gaatataccg gtgcggtaac aacccgtact
     4921 tcaatgcctc aaccatatcc acacgattgg gcgaagaacc aatatgtact ctttgattcc
     4981 aacgcacaga aaacagcaag tgtgaatact caagatgcaa ctagcttaca aacagcaagc
     5041 cttaacacca tcggtttaag cccaaataat ctggatacca ccatcagctt tgtacgcacc
     5101 atttcaaatg agctgacagc gccatcaagc aaaccattta ttatttcggt gtttggttca
     5161 cccgaagagg tgggggaatg ttatgaaaaa attgttgctt tccaaactga agtgaaaatg
     5221 cctttggcaa tggagattaa tatctcttgc ccgaatattc cgggtgaaat ttcgcctgct
     5281 tattccgcag aagaattatc acattacttg cacgcactac aaacttcgct aaaaaaactg
     5341 gctcaaggtg ataatacttt accaatcggg attaaaattc caccttttac ttaccaaaat
     5401 caatatgatg aattaatcaa aggcttatta caagcggtcg aaaatggcga aaatttacca
     5461 atttccttta ttacttcaac caatacgctt ggctcatcgc ttgtcttaaa tgctggcaaa
     5521 gcggtattaa attcagaagt gggaacgggc gtaggcggaa tggcaggaac ggcaatccat
     5581 gcactttctt tggggaatgt ttacacgatt cgccaaatgt tagatcaaga gcctaagctc
     5641 aaacatcttc aaattattgg tgtgggcggc gtgaatgata aagccggctt tgagcgaatg
     5701 aaatcggttg gggcagactt tgtggggtta gctaccgcat taggggtgaa aggaatcggc
     5761 gtttttaaag agattctgtc tgaataatga agaggagggc gtgcattgca cgcccgaata
     5821 aatgaaatta gcctaaccat ttctccacta attcattagt ggtttcttta tgtacccaca
     5881 tactgccaag ttccggcatt gggaatttgg tgtggttgta gccgacaaat tggcggaaat
     5941 caaacacggc gtgcgggtag ccgttgatca gtaaaaaggc ttgatagccg tcttcactcc
     6001 agcaaatttc taaacggcga ggttctttta atgaattttg ctcaatatcg ctgacccgaa
     6061 acacaaataa actatccact accggctgtt cggtttggtg taagtccatt gcataaaagt
     6121 agccgctttc ttcatcaatt tcaaacatca ctactaaatg ttcgtgctgg gttgaatgag
     6181 cgccattacg gtaaggttcg ttcagtagaa tatgagcagt taaaacagag tagagcatta
     6241 aattatcctt ataagtaaaa tgccaccgat ttctcagtgg catttaaata tttaatcagg
     6301 caattacgct tgacctttaa tctctttacg gccgttgaac ggagccggtg taccagcacg
     6361 ctctaacgct tcttcgatac ggattaactg gttgtatttc gctacacggt ctgaacggct
     6421 cattgaaccg gttttgattt gacctgctgc tgtacctact gctaaatctg caatggttgc
     6481 atcttcagtt tcgcctgaac ggtgagagat aactgcggtg taacctgcat ctttcgccat
     6541 tttgattgca gctaaagttt cagttaaaga accgatttgg ttgaatttga ttaagattga
     6601 gtttgcgata cctttctcaa taccgttttt caagattttg gtattggtta cgaataagtc
     6661 atcaccaact aattgtactt tgtcgcctaa tactttagtt tggtatgcga aaccttccca
     6721 gtcagattcg tcttgaccat cttcgataga cacgattggg tactctttgc ataagccttc
     6781 taagtagtga gtgaactctt gtgaagtaaa ggttttgcct tcgcctttca tatcgtacac
     6841 attgcgttct ttgtcgtaga attcagatga tgcacagtcc atcgctaaag ttacgtcttt
     6901 acctaacaca tagcctgctt tttctaccgc ttctttaatg cacgctaatg cgtctgcgtt
     6961 tgaagccaag tttggtgcga aaccaccttc gtcacctaca gcagtattta agcctttcgc
     7021 ttttaatact tttgcaagat tgtggaatac ttcagcaccg atacgaagag cttcttttaa
     7081 tgtagaagca cctaccggtt gaatcataaa ttcttgaatg tccacgttgt tgtcagcgtg
     7141 ttcaccacca ttgatgatgt tcatcattgg taatggcatt gagtaaacac ccggtgtgcc
     7201 gtttaattca gcaatgtatg cgtaaagcgg taagcctttt gaagcggctg ctgcttttgc
     7261 tgttgctaaa gaaaccgcta agatagcgtt tgcaccgaat tttgatttgt tttctgtgcc
     7321 atctaaatcg atcataattt ggtcgatttc agcttgtgca gaaccgtctt tgcctactaa
     7381 tgcgtttgca atttcgttat ttacggcaga aaccgctttt aatacacctt tacctaagaa
     7441 acgacctttg tcgccatcac gtaattctaa tgcttcacgt gaaccggtag aagcacctga
     7501 tggagcggct gctaagccta caaaaccacc ttctaagtga acttctgctt ctacagttgg
     7561 gttaccacga gagtcgatga tttcacgacc gattacttta acaattttag ccattgttga
     7621 tgtcctctaa tatacgagtt aatagaaaaa agaataggta tatagtaaag cgattttctg
     7681 cttttgtctt ggaaaaactg attgagtggc agaaaatttg ccactaattt gatctaagac
     7741 tatattcgcc tgagattata gcaacctttg caaaaaacgg caaaaatttg cccgcttgta
     7801 atgcttattt tttgactaaa aaagtcaagg tttcataatg tgctgtgtga gcaaacatat
     7861 caaacagctg cactttgtgt agttcgtaat ttgtcaaaaa tgtaaaatcg ttcgccattg
     7921 agacggcatt acaactggag taaatcaaat aaggtgagcc taattgattt aaaaattctg
     7981 ctaatagttt gccgatacca cgtcgaggtg ggttcacaat cactaaatcg ggtggagaac
     8041 cagcttcatt taaagcaaat tgtgcagaat ctaatgaggc aaattttacc tgctttaggc
     8101 cgagtttttc agccgatttg gtcgcacttg caatagctga ggctgaaatc tcaatgcctg
     8161 tcagctccac gttcgagttc ttcgcttgca aggcgttggc acaatgtaag ccgaaaccac
     8221 cgacaccgca gaacaagtcc cacaatttag caataggtaa atgctcaatc cagctttgtg
     8281 ctgtgtggta aagctggctt gctaccacag ggttagtttg gaaaaagccc tgagggcgaa
     8341 taaatagcgg tatgccgtta aaatgttctt ccagcacttt ttgttcggtg aggaaaatct
     8401 cagtttcgcc ttctaaaaga gcagcgtgtt ggggctgaat attcagacta actactgagt
     8461 tgggtggcag tttttccaac agttcgggca attcccgttc aaccaatgca cgctttgctt
     8521 cactacgaac cacaaaacgg agcataaatg attgattata ttggctttcg gtaatcagaa
     8581 tatattttag ctcacctttt ttcttactga tgttatacgg cactaaacca gctcgagcga
     8641 taaaatcttt caaaatcgga aaaagtctat gaaatgagga cgggtagagc agacagtcgg
     8701 ttaaatccac cccgctttga gcatcatttt gatcttttaa aatgcctaaa atcgggcgtt
     8761 ctacactgcc ggagaccacc attttcgctt tgttacgaaa ttgcgaaatt ggcgagccga
     8821 caagcggtaa gatttccgtt ttattttgca aaataaacgg caaaatcaac cgcttgagat
     8881 cggcctcttt ggcggctaat tgcgtgctgt atggcttttc aatccactgg cacgaagtac
     8941 agtcgccacg ctcaaaatgc gaacaatgca acaagctaga cattcgcttc cttccattcc
     9001 agccagttgt tttgtaaggc cgttaattca gcctgagttt gttggtagcg agagctgttt
     9061 tccagctctc gccaagtcac ggttttgcgt ttcattaaag aaaggcgacg ttctttttgt
     9121 gcttgagtcg gctgatattt cagcccgtct aacacttgca ccaggccttc aggctcgtta
     9181 caaaggagca ataaatcaca gccggcttgg attgcttttt cagaacgctc gacaaaattg
     9241 cccataaagc ccgcaccttt cattcccaaa tcgtcagaga atatcacacc gttaaagttc
     9301 agctgtttac gcaatacctc tttaagccaa tagcttgaac cgcttgccgg ctggctatca
     9361 cattgggtgt aaacgacgtg ggcaggcata atggcagaga gttttccttt ggcaataagc
     9421 tgtttgaacg gcagaatatc gtgattaaaa atccgctctt tcgggcgatc atcaaacggg
     9481 gtttctaaat gcgaatcggc taaaacgtgt ccatgaccgg ggaagtgttt gccggtggtc
     9541 gccataccga tttcacgcat tccgtcaata aaggcttcgg caacaggcaa aatcgctgct
     9601 ggctcttgcc cgaatgagcg atcgccaatc gctttgcatt cgtgtcctaa atccagtacc
     9661 ggagcgaaac tgaggtctat atcgagggca aacatttctg ctgccatcaa ccagccggtt
     9721 tctttcgcta attgcattgc ttgctctggc gttgtggcaa gttggttaaa agattgcatt
     9781 gccggcagtt tagtaaagcc ttcacgaaag cgttgcaccc gaccgccttc ttggtcgaca
     9841 gtaataagca acggtttttt cacccgctgg cgaatggatt tcactaatgc ctgaatttgt
     9901 gctttgtcgt agaaattacg ggtgaataaa attagcccgg aaactaaagg gtgttccagc
     9961 atttcgactt cttcttgagt cagttcttta tctttaatat caatcagtaa cataattttc
    10021 gttgagctat ttgcaaaaaa atgagcagat atgaccgctt gttgtgccta ttctacatta
    10081 aaaagccctt gatgttgatc aagggcgaat gattaagggc ataaatgaga cagagcaatt
    10141 atgcttgttc taatttagct tggttacgac gcatttttat gttgagcatt tcaaccacaa
    10201 ccgagaagcc cattgccgta taaaccgctg cttttggaat atgaatatca aaaccttcgc
    10261 cgactagtac aataccgatt aaaatcaaga acgctaaagc gagattttta atggttgggt
    10321 tgttatctac aaagtcccca atggttttcg ctgctaacat cattaccgca actgcaatga
    10381 taatcgcaat aaccattacc ggaatatcat ctgccattgc cacagcagta atgactgaat
    10441 caagggagaa aataatatca aaaattgcaa tttgaattaa caccataaaa aagctggctt
    10501 ttttaatgga ttcgcttttt tcttcgtgag attcggcaga aatggattct ttcagctcca
    10561 ttgcactttt aacaatcagg aataatccac cgatgagtag aatgagatct ctacctgaaa
    10621 ttggattgtt gccaatagtg aaaagaggct cgaccaaacg catcatccaa gcaagcgaga
    10681 gaagcaataa aatacgggtt cccattgcca gccccaagcc gataattcgg gcagattggc
    10741 gttgttcaat aggtaaacgg gaaacgagaa tactgatgac gatgatgtta tcaatgccta
    10801 atacgatttc aagcccggta agtgtaaaga gcgcaaccca agcttcagga tttgtgatcc
    10861 agtcaaacat aaaaatgtcc ttttaaaaat aagggattaa gtgatatttt ctatcaaata
    10921 gaattaaagc cgacatctta tagagtgtga ggacaaattt aaagggggca atgcaaaaag
    10981 ttttgtaaaa tttcggcggt aaaatgttta cgcaaataga aaccaagagg gagagattga
    11041 acaatctccc ctttagcgtt gatagcagag gtgatagagc ggttatttct acctttgggt
    11101 ctgagttgta acacttcgcc taaggttgca ttaattttat gcagttcacc taacacaatc
    11161 aactccatta attcctccca atcttgctgt aggcgggatt cttgtgtgat agtcggagac
    11221 cataaaatcg gctgaccgat atggcgttcg gcaaggggta tctttcgttc cccttcaacc
    11281 ggaatccaaa gcacacggga aagcttatgt ttaacgtggg aggtttccca aataataccg
    11341 ttgttttggg ttaaaggagc aaggctgacg aatgtggttt ccagcggtaa tcctttctga
    11401 ttgaccggaa tggttttcag ctcaatgcct aaatgtgcaa aatcctgttc ggctttactg
    11461 ccggctttcg cacctaaagc ggtttcaatc agagtaccga cccagccttt atctcgtttc
    11521 agatctgctg gtatcggaat atgaagcatc tcggcaattt cacctaaagt gaaccctgcc
    11581 agccattccg ctttgcttaa taatgcctgc tcggttggag agaatgtaga taattgcatt
    11641 gcacttagtt aattagacta aactggcaag cggtcaaatt taggcagaaa tttgcaaaaa
    11701 attactaaaa aataaccgct tgtgaggaaa ttacatccaa gcattactgc gaataacgcc
    11761 tactgcaatg ccttcaattt caatatattc ttgagcaggg tttactacaa tcggttttaa
    11821 ttcatcgttt tcagggtgta agtaaattaa ttcacctttc ttctctaagc gtttaacagt
    11881 cacttcatca tttacccgag caaccaccac ttgcccgtta cgagcggtat tggttttatg
    11941 aacggctaat aggtcaccgt ctaaaatacc gattttttcc attgaattgc catttacttt
    12001 gagtaaataa tcagcacttg gattaaacat cgcaccattc accgggtaat ggttttcaac
    12061 gtgttcaacc gctaaaatag gtgtgccagc agctactttg ccaatcaacg gtaagccttc
    12121 atcttcatcg ttggcagctt ggttttcgtc ttcgactaaa atgcgaattc cacgagatgt
    12181 acctgataac atttcaatat agcctttacg agcaagggct tttaagtgtt cttctgccgc
    12241 attaggtgat ttaaagccga tttcacgggc tatttctact cgggttggtg gcataccggt
    12301 ggtttcaata tggtttttga cgaaatcaaa aatttcttgc tgacgggcag ttagatgttt
    12361 acgcatttta agttaatcct cactgtcttt atatacagaa aatattgata gtatatacag
    12421 tatttttgat tttgtaacta ataatttcac gaaattccat aaaaatttat ggtagaatgg
    12481 aagaaattag aggttagacc tccaacaata acgattctaa aaggatattt atatgtctgg
    12541 cttattaaat ttttatcgag ctttcctaaa cttaccactt tcacttttag taaaatctcg
    12601 ctctattccg actcatccgg tggctgaact ggaactaaat cttgaacagc cgattgtcta
    12661 tgttctacct tatacctcgc aaaccgattt attaatttta caaaaaaact gcttggcttt
    12721 gaatttgccc gatccgttgc aagaaaatgt gattgaaggg caaacattgc ttcgttttgt
    12781 atttttagat gaaggtcgcc gtttttttaa atctaaaggg gcgaaaagtg agacagagtc
    12841 gattttttat cgttatttag atttacatcg tgctaatgct gaattagacg tccaattagt
    12901 gccggtttcg gtattatggg ggcgggctcc gggcaaagaa gatgcccgcc atttacaggt
    12961 gcttacctca ttccaacgtt ttttatccat ggtttggttt gggcgtgata attttgtacg
    13021 tttctcccct gcagtatcgt tacgctatat ggtaactgaa tatggtgcag atgaaaaaat
    13081 cgctcaaaaa atcgcgcgtg tggcgaaaat gcactttgca aaattgcgtt attcagcaat
    13141 ggggcctcgt ttaccaaatc gtgatgcgat gtttaataaa atcctgaatt cagaggtgat
    13201 tcaagctgcg attgcggaag aagcgaagaa atcatcgcct gaaaaggctc gcaaagaagc
    13261 cgagaaaatc attaatgaaa ttgccgctga tgtaaaacac gagagtttgc gtgtagcaga
    13321 tcgagttctg agctggcttt ggaataagct ttatcaaggg atcaacgtgc aaaatgcaga
    13381 ccgtgtgcgt aaattggcat tagaaggtca cgagatcgtt tatgtgcctt gccaccgtag
    13441 ccatatggac tatttgctcc tatcttatct actttaccat caaggattag taccgccaca
    13501 tattgccgct gggatcaatt taaatttctg gccggcaggc ccgattttcc gtagttgggg
    13561 agcatttttc attcgccgta cctttaaagg aaatcgcctc tattccacca ttttccgtga
    13621 atatttagcg gaattattct atcgtggtta ttcggtcgaa tattttattg aaggcgggcg
    13681 ttcacgcaca ggtcgtttat tagagcctaa aaccggtatg atgtcgatga gcctacaagc
    13741 cttacagcga gggctgaata gatctttaag tattgtgcct gtttatatcg gttatgaaca
    13801 cgtcttagaa gtcgatactt acgctaaaga gttgagaggt gcggcaaaag agaaagaaaa
    13861 tgcgggcttg gtgctacgag tgctgaaaaa actgaaaaat ttaggtcaag gatatgtgaa
    13921 tttcggtgag ccaattttgg tgaataatta cttaaatcaa tatttccctg agtggaaaga
    13981 gccttccgaa gatggacgac ctaagtggtt aaatgaagcc gtggataata tttcacatca
    14041 agtaatggtg aatatcaata aagcggcagc agttaatgcg aaaaacttag tggggtcagc
    14101 attattggca tctcgccagc gtgcattaac ccgtgaacaa ctcattgaac aacttggaag
    14161 ttatattcag ttatttcgta atgtacctta ttctaaagat atgacattac caactgaaag
    14221 tgcagaagtg atgttgaatc atgttattca tttacctcgt tcgggcgttt taattgaaaa
    14281 agataatttt ggtgaactgg ttcgtttaga acgagaatct gctgtgttaa tgacatatta
    14341 cagaaataat gtgcagcatt tatttgtgtt gccttcactt gttgcaagta tggtacttca
    14401 tcatgaggct gtttcgaaag atgttgtgat taagtcggtt aatcgtattt atccattctt
    14461 gcaagcagag ttattcttac actttaagca agaagaatta aaagcacata ttgaagcaat
    14521 tattgcggaa ctaagtcggc agggggtgat taaaaacgaa agtgatatgt taatgatcaa
    14581 tcgctcacat attcgtacct tgcaattaca ttcagctggt gtgcgtgaaa tccttcaacg
    14641 ttattatatt agcctaagtg tcttgttgga gcagccaaat attagtcgtg gctatttaga
    14701 aaaagagagt agttcaattg ctcagcgttt atcagtcttg catggtatta atgcgccgga
    14761 gttttttgat aaggcgattt tctctacctt tacatcaagt ctaaaagcac aagggtattt
    14821 tgatggtgat gataatttag cgattgcaaa agttaaagaa acggaatcgt tgttacgtag
    14881 tttgatttcg attgaagttc aacagaccat tcaaggtgcg atggctaaag tcgcagaatc
    14941 tgtagagaat cctaatatcg caggataata aatcaaagaa gggcgctaac aagcgctcgt
    15001 ttcttgcaat tttgttgcca aaaataaaag ctgaatgcgc gaccacattc agctttttta
    15061 cttcctatat aattattttg gttcaccgat tggtaaaaca gtcttaccaa aactttcatt
    15121 aataatatcc gcagcggcta agtagaacgc taagaatgcg gttaataaac cgaagttacc
    15181 accaatgtta gttagggtgg tgttatgggt aaaatcacct gcggctaaaa ggtagaaagt
    15241 aatggttaaa cttaagaaaa tagcttgtaa tgcacgggct tttgctagtg tgccgatgaa
    15301 catcataagt gtgaatgttc cccaagctac taagtaccaa ccaacgaatt ctgccgatac
    15361 attcgcagca aagaacactt taaataatgc aaaagaccac cagaatgcac catagctggt
    15421 aaacgcagta aagccgaacg tgttaccttt agcaaattca aacatacctg caatcatttg
    15481 tgatgtgcca ccgaaagcaa atcccattgc taaaactaaa cctacgtttt caccgctgaa
    15541 tgtaccgtta ttgattaggc ttagtaaaaa tgtagtaagt gcaaaaccgc ataaaccgag
    15601 cggagccggg ttagttcctg aatttggagc tgacattgaa aacctctgtt atattgttac
    15661 accataagtg tggtaattgt ttatttacgc cgataaatca gacgttatgt gcctaaaatt
    15721 tagggcgata aagtatagcg attttgcagt aaattgacta gaaatttccg agacaagcgg
    15781 tgagattttt gcaaaatttt gccaaaaaat gaccgcttgt tgttgtcatt tagctatgga
    15841 tttaactgcc gatattggct gggtgttacg caatattgct ttttaaaggc ggtaataaaa
    15901 tgcgactcgg attggaagcc gcaagataag gcgatactta ataccgaccc agcttggctt
    15961 ttgagcagca ttgctgcttt ttgtagccta attttgtgta caaaagcatg tgggctaata
    16021 cataaatgtt tgttaaataa gcggactaac tgggcacgag aaaggtggat aaatgccgcc
    16081 atatcatcga cttgccattc gtgttcggga ttaagcaaaa tagctttgat caaaggtctt
    16141 aagtgtaagt cttgccaacc ttttaaaata ccgaataact gattgttatg gttaactaga
    16201 tgttctcgta agatcatagt taaaataaca acagcaagcg agttaaccac agattttacg
    16261 gctaaattag gtgtttctgc ttcttgtttt agaatatcta acattgcttt taatggtgtc
    16321 tcggcaactt gaaatacgat catttcaggt aagctttcca ttaattcggc ttgatggtca
    16381 taataaaaat ggaggcagaa catatcgcat tctgattgag aaagtcctgc ttgggtgagt
    16441 gtaaatgcac ccaattgttc agggtttacc gcatttttgc tggtcaaagg ctgtatttga
    16501 ctacgtaatg tatgatcggc aaatctgggg aaaaatacaa tatctccctg tttaaggtga
    16561 tgggttttcc cattatgttg tagataagct tgcccatagc tgatgatatg agcgattgct
    16621 tgtccggttt gatgcggatt ctcaagttgc caatctccct gtaactgaca tttcacactg
    16681 attccggctg agatttgagc gaaagctaga agcctatcta atatatccat tgttcattcc
    16741 ttatatttcc accttaaatt gcgattattt cattataata tgagctgatt tgataataaa
    16801 gtttatcaga taaacgcaat aataaatgcg ttttttcata ttattcactt taggaggaaa
    16861 tcaatatgtc ttcattccaa aattggacag aacacacagc tcacgttaag caatcttttg
    16921 gtaaattagg gcaaaaacac cctaaaatgc ttgaagctta taaagcatta ggtacagcgg
    16981 ccgcagcgga agcattagat cacaaaactc gtgaattaat tgcattagca gtagcgatta
    17041 caacacgttg tgaaagttgc atcagtgtac acgcagaaga agcggcaaaa gcaggtgcaa
    17101 ccgaaagcga aattgccggt gcattagcga ctgcgattgc attaaatgcc ggtgcggcat
    17161 atacctatgc tttacgtgca ttagaagcgg tggaagagca aaaataagga gcaataaatg
    17221 aagaaattgg cttggatttt aggctttgca gctatgatgc caatgatgtc tagtgctaaa
    17281 caagcatcag ttcagcaagt gcaggctgaa aaagcagcgg gcatttggat tgatgtacgt
    17341 tctgctgaag aatttcagca agggcattta aatggtgcaa ttaatgtaac gcatactgaa
    17401 attgcacaac gtatcgcaga agttgctcca gataaaaatc agccgattca tctttattgc
    17461 cgctcgggtc atcgagctga agcggcgctt aatgagctaa aaaaattagg ttacagcaat
    17521 gtaactaatc atggtggtta tgacgatctg attaaagccg ggttgaaata actgttttga
    17581 gtgccaagca tttgcttggc acttttcgtt tatatctgag gttaaaaatt atgagtgctt
    17641 ttaacaattt tgttaatttt gttgcaaata ttgttgctcc aatgcaacgc caattcatta
    17701 actttgtacg tattgccatt tgtatcgtga tggtttggat tggtggttta aaagtctgcc
    17761 aatatgaagc agacggtatt gcccattttg tgtctaatag cccgttcttt agttatatgt
    17821 acaaaaaagg cccgaattta gttgatgacg gcacaggtaa aatggtgatg gaatataccc
    17881 ttcacaaaaa ccctgaaggt aaaatggtgg caaaaaacat cgaatggcat aaagaaaacg
    17941 gcacttatac tgcatcttat atcatcggtg caaccattgt gacggttggt ttattgacgt
    18001 tatccggtat ttggttcccg gtttccggta tggcgggggg cttactcacc tttggtatgt
    18061 cgattgttac actctctttt atgatcacca cccctgaaat ttgggtgccg aatttaggtg
    18121 gggatatgcc aaccccagcg catggtttcc catatctgtc agcagtcggt cgtttaattg
    18181 tgaaagatgt gattatgatg gcaggcggct tggttgccgc agcggaatgt gcaaatcgca
    18241 ttttagccag acgtaaagcg attgcttaat tgatagtggt aatgcaagcg gtcattttct
    18301 tgtaaaattt tgcaataaaa tgaccgcttg ttttttgtca atttgccata atttcaagta
    18361 taattcaatt acgtaatcgt ttgcttttat ggagaggaat aaaatgacaa caatcggtac
    18421 accgttaaga acgaacgcta caaaagtgat gatgttaggt tcgggcgagt tggggaaaga
    18481 agtggtaata gagctgcaac gcttaggcgt agaagtgatt gcggtggatc gttatgacaa
    18541 tgcacctgca cagcaagtgg ctcaccgtgc ttatacgatt tcgatgttag acgggaatgc
    18601 attgcgagat ttggtggaga aagaaaaacc ggattttatt gtgcccgaag tagaagccat
    18661 cgcaactgca accttggttg agttagagca agagggatat aacgtaatcc caacggcaaa
    18721 agcaacgcaa ttaacaatga atcgagaagg cattcgccga ttggcggcag aagagttggg
    18781 cttaaaaacg tcgccttatc gttttgtgga taattttgaa cagttccagc aagcgattca
    18841 agaaatcggc attccgtgtg tggtcaaacc gattatgtct tcttccggac acgggcaatc
    18901 agtaattaaa tctgaagcgg atattcaaca ggcttgggat tattcgcaac agggcggacg
    18961 tgccggcggt gggcgtgtga ttgtagaggg ttttatcaaa ttcgattatg aaattaccca
    19021 gcttaccgtt cgccatattc acggcacgtc gtttttagct cccatcgggc atattcaggt
    19081 tgatggcgat tatcgtgaat cttggcaacc gcagcaaatg tcggacattg cattgaaaaa
    19141 agctcaagaa accgcagaaa aaattacctc tgcactgggc ggaagaggga ttttcggcgt
    19201 ggaacttttt gtctgtggcg atgagattat ttttaacgaa gtctccccac gtccacacga
    19261 taccggaata gtaacaatgg catcacaaga gctttctcaa tttgctctgc acgcccgtgc
    19321 gattttgggc ttaccgattc cggaaattta ccgcatcagc ccggcagctt ctaaagcgat
    19381 tgtggttgaa gggaaatcgg ataatgtgcg ttttggcggt gtagataagg tattagccga
    19441 aatcgggacg aatatccgct tattcggtaa aggcgaagta aacggacacc gccgattagg
    19501 ggtaattctt gctcgtgatg aaaatacagt gagagcatta gaaaaagctc ggcgagctta
    19561 tgataagtta gatattcaat tataaagtca ggattttgat attcgttgat agtaggcatt
    19621 ttatgcctac tatcctatag gcctctaatc aaattggatg aaaaagttga agattgttaa
    19681 tcctctttgc cgagaatttg gttcacttcg ctcttataca atactgcttt tgctccaaat
    19741 acggcttgta caccgccacc gacttccagc acgtcaatcg caccgagttt tttcagtgtt
    19801 gctttatcca cggctttcac ctctttcact gccacacgca gacgggtaat acaagcatcc
    19861 acattttcga tattatttgc agagccaaga gcggcgataa ttttatgggc attttcagtc
    19921 agtgagctgg tttgttgttc gactacctct tcactctctt ccgcacgtcc cggtgtcatt
    19981 acgttgaatt ttttgatcag gaataggaac gagaagtagt aaagtgccgc ccacggcaag
    20041 ccgactatga tcactcgaag ccagttagtg ttctcgttgc cttgcaaaat gccaaacagg
    20101 gtgaagtcga tcacgccacc ggagaaggtg ttaccaatcg agatgttgag taagtctgca
    20161 atgtagaacg acacgccgtc taaaaaagcg tggaacacat agagccacgg ggcaacaaac
    20221 aggaacataa attcaatcgg ctcggtaatg ccggtgataa aagaggtgag cgctgcacct
    20281 aagaacagac cgctaatcgc accacggcgg gctttcggca cagcgtgata catcgctaaa
    20341 caggcggcag gtaagccaaa catcatcgta tcgaaacgtc cagcgaagaa acgtgtacct
    20401 tcggtaaata agccttgatg ggttggatcg gcgagttggg cgaagaagat tttttgcgcc
    20461 ccgataatgg tttcaccatt taccacttct gttccgccca attcggtgta ccaaaacagc
    20521 gggtagatca tatggtgtaa gccgaccgca ccgcttaacc gcattaagaa accgtagaaa
    20581 aaggtgccga tttcgcccat ttccgcaatc ccttgccctg ctgaaaccaa ccactgttgg
    20641 aaagccggcc agatcaaaaa gaacactgcc ccgacaaaaa tcgcagcaaa ggcggtcaca
    20701 atcggcacaa accgagagcc gccaaagaag ccgagaattt gcggcagctg aatgttgtgg
    20761 tatttgttat gcagtttcac cgtaatcaag cccattacca gcgagccgat cacaccggta
    20821 tcaatccctt tggtttcagg aggaaacagc ggaatgaggg cagaaatcgt gcctgtcata
    20881 atcaaataac cgaccactgc tgccagtgcc gctacgcctt tatctcgttt tgctaatcca
    20941 atgcctaaac cgatacacag taataatgca aggttgccaa acaccacact gcctgccgat
    21001 gccataatct ggaaaatgcc ctgtaaagtc gggttatcca gtatcgggta ggcttgcacc
    21061 gttgccttat tcgacaaagc tccgccaatc cctaacagca aaccggctgc cggtaaaatc
    21121 gcaatcggca gcataaaagc ttttccgact tgttgcagtt gtttgaacat aaaatttctc
    21181 cttttttatg gttgtatttg atggtttata gcatactgaa atttagccgt atgaggtgtg
    21241 atataactca cagatttgca aaatttttag caaattcgac cgcttgtaaa aaaattaccg
    21301 cttgcggaaa aattgaagta gaattaagca tttttttagc aaacacaaca taaaaaattt
    21361 ggagaagatt atgcctattt tacgttcagc aacttccact cagggtcgta atatggcggg
    21421 ggctcgtgca ttatggcgtg caaccggtat gaaagaaaat gattttggta agccgattat
    21481 tgcagtggtg aactcattca cccaatttgt gccggggcac gtccacttaa aagatatggg
    21541 gcagttggtt gcggcagaaa ttgaaaaagc cggtggggtg gcaaaagaat tcaacaccat
    21601 tgcggttgat gacggcattg caatgggaca cggcggaatg ctttattctt taccaagccg
    21661 tgatttaatt gcagacagtg tggaatatat ggtgaatgct cactgtgctg atgcgatggt
    21721 gtgtatctct aactgcgata aaatcacccc gggaatgtta atggcagcaa tgcggttaaa
    21781 tattccgact atttttgtct ctggtggccc gatggaagcc ggaaaaacta aactttccga
    21841 tcaattaatt cgcttggatt tagtcgatgc aatgatcgaa agtgccgacc cgaatgtgtc
    21901 tgatgaacgt attgatgcga ttgaacgtag tgcttgcccg acttgtggtt cttgttcagg
    21961 tatgttcacc gcaaactcaa tgaactgttt aactgaagct ttaggcttaa gtttaccggg
    22021 caatggttca atgttggcaa ctcatgctga ccgtaaagag cttttcctaa gagcaggtcg
    22081 tgaaattgtg gaactttgcc gtaaatatta ccaacaagac gatgagagcg tgttacctcg
    22141 ctcaatcgct accttcgatg catttgaaaa tgcaatgagc cttgatattg caatgggtgg
    22201 ttcaagtaat accgtgcttc atttactagc gactgctcaa gaagccggcg ttgattttaa
    22261 aatggaagat attgaccgcc tctctcgtgt cgtgccgtgc ttaagtaaaa ttgccccgaa
    22321 taccaataaa taccatatgg aagacgtaca ccgtgccggt gggattatgg gcttgctggg
    22381 cgaattagat cgtgcaggtt taatccatcg ccacgttaaa acagtgctag gtttaacgat
    22441 agaagagcaa ctgaatcaat acgatattat tcgtaataaa gatgaagatt tacacaaatt
    22501 cttccgtgca ggtccggcag gaattcgtac tactaaggct ttctcgcaag attgccgttg
    22561 ggacactgtt gatgatgacc gtgtaaacgg ctgtattcgc aatgtggaaa atgctgtgac
    22621 caaagagggc gggttagcgg tattatttgg gaatattgca gaagatggat gtattgttaa
    22681 aaccgcaggg gtagatgagt ctatttggaa attcactggc accgcaatcg tgtttgaaag
    22741 ccaagaagat gcggtagcag gtattttagg cggaaaagtg aaagaagggc atattgtgat
    22801 tatccgctat gaaggtccga aaggcggccc gggtatgcaa gaaatgcttt atccaactag
    22861 ttatttgaaa tcaatgggct taggcaaaaa atgtgcttta ttaactgacg gtcgtttctc
    22921 tggcggtacc tcagggttat ctatcggaca cgcttcaccg gaagccgctt caggaggagc
    22981 gattgcctta attaatgatg gcgatacggt ggcgattgat attccgaatc gttcgattaa
    23041 cttaatggtt tcagatgaag aacttgctgc tcgccgtgca gaaatggaag cccgtggcga
    23101 taaagcgtgg cagccgctaa aacgtgagcg agaagtgtcg tttgcactaa aagtgtttgg
    23161 acattttgcc acctctgctg ataaaggtgc ggtgagggat aaatcgctgt taaagtaaat
    23221 aaattagaaa aaagaagcat ttcaataata tattgatctg ctctttattc agctgaatat
    23281 ttaatctagc tgaatggaga gcagatcgat agcctaattt acatcttttt gttttgatac
    23341 agggaaatgt attacaagca ttttgccggt tttggcagac ctgcaatttt agtggcttgt
    23401 tttgcaggac catcaggaaa caagcgttgt aaataacggc tgttgccttt ttcttcaccg
    23461 aatttttgtg ccattgtctt taccagcatt cgaattgctg gtgaagtttt gtattcttgg
    23521 tagaaatccc gcaccagata aataatttcc caatgttctg cggttaagct aatttgctct
    23581 ttttcggcga ttttttctgc taattctaca gaccaatcat ttaaattagt taaatagcct
    23641 gaagcatcgg ttgggtattg gatattattt aattcaatcg tcatcaaata aaaatgccac
    23701 ataatgtggc attcctctta aactaaaacg ctagtcgtca ctacctagca caccgaagat
    23761 ttgtaagaag cttacaaata ggttgtagat agacacatat aaatcaacgg ttgcacgaat
    23821 gtagttggtt tcgccaccgt gaataatgtt gctggttgcc agtaaaatcg caccgcttga
    23881 gaaaatgaca aacaagctgc ttagggctaa acttaatgcc ggaattgcta agaagatatt
    23941 ggcaataata ccgactaata ataccacaaa cagggcaacc atcattccgc tgataaagct
    24001 catatctttt ttggtggtta atacataagc tgaacaagcg aagaaaacca atgcggttgc
    24061 accgaatgca agggcgacaa tatcccctaa acccgcaccg atgtaacggt ttaaaatagg
    24121 acctaaggta tagcctaaga agccggttaa agcaaatacg cttaagatac ccgcactgct
    24181 gtttgaggtg gcattcgtca agaaaagtaa gccgtaaaag ccgaccaata atccccacca
    24241 cggcatagcc ggtgcgttca tttgaattgc aacaaaagca acaactgcgg agaaagtcag
    24301 ggtcattgcc aataacatat aggtattgcg aagcactttg tgggtgctaa ttagagattc
    24361 accagttgaa tagctgtgag ctaaacgatt ttccataaaa attccttctg tttttgtgtt
    24421 taaatcggaa catccgatgg attaatatct atggataaat ttccataaat caagaagtaa
    24481 ggtagccgta atttattgta aagtcaatgc gattttgtaa cagaagagta aaaaaaaaca
    24541 tttagttgtg ttacacttaa taccactcta ctttatattc cttttcatcg atgaattcgc
    24601 tatgaagctc aatttcccaa cttatttaac cttatttcgg gtaggattaa ccccactttt
    24661 tattgtggct ttttatctgc cgacaaaata tgcgcctgaa atttcaacac ttattttttt
    24721 tattgcatcg attaccgatg cctttgacgg ctatttagca cgcaaatgga atcaaaccac
    24781 ccgacttggt gcatttttag atcctgttgc ggataaagtc ttggtagctg ttgcgtttgt
    24841 ctgcgtggcg gagtattacc atacttggtg gattactatt ccaatctgca ttatgattgc
    24901 ccgtgaaatt attatttcgg ctttgcgtga atggatggcg gagcttgggg aaagggccag
    24961 tgttgccgtt tcgatttggg ggaaagtaaa aacgactgct caaatgctcg cattaggtgg
    25021 aatgttatgg agacagaacc aactaatgga gattttagcc tttattctgc tttatattgc
    25081 agtgggttta acgatctggt ctatgatgca gtatttaaat gcttcaaaga atagtctatt
    25141 gaagtcataa gcggtcatat ttttattctt ttttgcaatt tgtagagtgg aaatatcgct
    25201 ctacaatttt caattttatc aactctaatg tctgaattta acgctaaatc cttcctgtta
    25261 aatgtgcctc accaaccggg tgtttatcgt atgtatgata gtaaaggcac gataatctat
    25321 gtgggtaaag ccaaagattt aaaaaagcgt ttagccagct attttcgtag ccaactttcc
    25381 agtaaaaaaa cggaagcctt ggtggcaaat cttgctaata ttgaaacgac gatcactcat
    25441 tctgaaacag aggcgttact ccttgaacat aattatatta aggaaaatca gccgaaatat
    25501 aatgtgttgc tcagagatga caaatcttat ccttatattc tgttaactaa acataagcat
    25561 cctcgtttaa cagcatttcg tggtagtaaa aagatcgccg gtgaatattt tgggccttat
    25621 ccgaatgtta cggcagttcg ggaaacactg aatttattgc aaaaaatttt tcctattcgt
    25681 cagtgtgaag atacttatta taaaaaccgt tcacgacctt gcttacagta tcagatcgga
    25741 cgctgtttag ccccttgtgt agagggctgt tattcacccg ttgaatacga tcagcaggtt
    25801 aatttggttc gtttgttttt acagggaaaa gatcaccaag tagtcgagca tctggtacag
    25861 aaaatggaag atgcggcgga ggctttggat tttgaaggtg cggcacgttt tcgggatcaa
    25921 attcaatcag taagagcggt gcaagaaaaa caattcgtct ctaatgatag gctagatgat
    25981 cttgatatta tctcgatcgt ttatcaaaat gggattgcct gtgtgcatat cttatttgtt
    26041 aggcaaggta aggtactagg caatcgttct tactttccaa aagtgccaag taatacagat
    26101 ttaaccgagc tcgcagatac ctttgtcggt cagttttatt tacaaatgaa ccagcaccgc
    26161 accataccta accaaattgt aattgatcat caattaagtg aatctaaggc actcagtgaa
    26221 attttaagtg agcaagcagg gcataaagtc agcattttag ataatgccat cagaggtgat
    26281 aaacagcgtt atttagcttt agcgagaact aatgcaatgg cagcattagt tttacaactt
    26341 aagcaagaat cccatattca aagccgttat caggcattga aagaaatgtt gaaaatgtca
    26401 gagattaaaa gaatggagtg ctttgacatc agtcatacaa tgggcaacca aacagtggct
    26461 tcttgcgtgg tgtttgatga aaatgggccg ctaaaatcgg attaccgccg ttttaacatt
    26521 gaggggatta ccggaggtga tgattatgca gcaatggagc aggctctctt gaaacgctat
    26581 aatcgagaat taccgccaga aaagatccct gatattattt ttattgatgg tggcaaaggg
    26641 cagttgaacc gagcgttaga tgtcttcgct aaacttgatg tggaatggga taaatcgaaa
    26701 ccgcttttaa ttggtgtggc aaaaggcgta gaacgtaaag ctgggctgga aactttaatt
    26761 atcagcaaat gggataaaga aattcactta ccgccagata gtcttgcctt gcatttaatt
    26821 cagcatattc gagatgaatc ccaccagcat gccattagtg ggcatcgtaa aaaacgccaa
    26881 aaggccttta ccgaaagtgg attagaatct attgccggtg tcggtgcaaa acgccgacaa
    26941 gcgttgctaa aatatttagg cggaatgcag ggggtgaagt ctgcaacctt ggaagagatt
    27001 caatcagttc cgggaatttc taaagcgttg gcagaggtta tttttgatac attaaaaaat
    27061 agttaaatta tcaatagcga tatcgcttcc agccgtaatg gtagcccact cctatgcttg
    27121 ggtaaattat agggtgaatt ggcagattta tgctttctga gcgtttatcg ctttggttta
    27181 atggctcatc atgttgcttt gtatttttat caacagtttg cttattgatt actcgttgat
    27241 ggtaatcctg aactgcttgc atatccattg gtactgtgct ttgttgttgg ggtgtcgaac
    27301 aggcggttag tgcaacgctc aatccgag
//
LOCUS       DANMBQ010000019        24680 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.019, whole genome shotgun sequence.
ACCESSION   DANMBQ010000019 DANMBQ010000000
VERSION     DANMBQ010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 24680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24680
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.019"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(100..175)
                     /locus_tag="PXE92_000721"
     tRNA            complement(100..175)
                     /locus_tag="PXE92_000721"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(140..142),aa:Asn,seq:gtt)
     gene            complement(181..256)
                     /locus_tag="PXE92_000722"
     tRNA            complement(181..256)
                     /locus_tag="PXE92_000722"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(221..223),aa:Phe,seq:gaa)
     gene            complement(388..1479)
                     /gene="mltC"
                     /locus_tag="PXE92_000723"
     CDS             complement(388..1479)
                     /gene="mltC"
                     /locus_tag="PXE92_000723"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HDL5759995.1"
                     /translation="MKKYAKYLPMLAIIPFLIACGSNKSTKKPKSTRVDYSKDTNGLD
                     ILAGQFSHNIDDIWGSNELLVASKKDYVKYTDKFYTRSHISFEEGVITIETLGNQNHL
                     RNSIIHTLLMGRDPKGIDLFASGDAPISSNPFLNGQVEDQFGRNITNVAIANDFATYL
                     LQNKVQTRRLKNGQTVSFVTIKMVAGHIEVRARQYLPLVRKMAKQYGIEPSLILGIME
                     VESAFNPYAISYANAIGLMQVVPRTAGRDIFARKGMGGQPSREYLYNPSNNIDAGTLY
                     LTILRDEYLDGIEDPVAKRYAMISAYNSGAGAVLRVFDSDRYSAIDRINDLSSDAVYR
                     ILTTAHPSSQARNYLRKVTTAREKYRNIR"
     gene            complement(1496..1765)
                     /locus_tag="PXE92_000724"
     CDS             complement(1496..1765)
                     /locus_tag="PXE92_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HDL5759996.1"
                     /translation="MARTVFCEYLKQEAEGLDFQLYPGELGKRIFDSISKQAWSEWIK
                     KQTMIVNEKKLSMMNPEHRKLLEQEMVNFLFEGKEIIIEGYKPVE"
     gene            complement(1769..2914)
                     /gene="mutY"
                     /locus_tag="PXE92_000725"
     CDS             complement(1769..2914)
                     /gene="mutY"
                     /locus_tag="PXE92_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDL5759997.1"
                     /translation="MNSNSPFPLAKAKASDPFAKAVLAWFEQYGRKHLPWQQNKTLYQ
                     VWLSEVMLQQTQVATVIPYFARFMERFPTVIDLANASIDEVLHLWTGLGYYARARNLH
                     KAAIQIRDEFGGEFPTRFDDVLALTGVGRSTAGAILSSVLDAPHPILDGNVKRVLSRY
                     FAVEGWAGEKAVENRLWQLSESVTPDTQVADFNQAMMDLGAMICTRTKPKCLLCPLQE
                     NCKTNAMQAWDSFPAKKPKKTLPERQTYFLVLKSGSKVLLQKREAKGIWGGLFVFPQF
                     ESLEALKRSDFMQNLQISQQLTAFRHTFSHFHLDITPVLVETDLKKTSENSPLVVEEK
                     AGNYLSKVSSNADYWYDLHQHNEVGLATPVKRILDELAFSVKNEIKD"
     gene            2998..3390
                     /locus_tag="PXE92_000726"
     CDS             2998..3390
                     /locus_tag="PXE92_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5759998.1"
                     /translation="MKSPILGFHHIALIVSDYEKSKHFYTRILGAEIIAETYREQRAS
                     YKLDLRFKDGSQIELFSFPETPPRFTSPETCGLRHLAFRVENIEYAIAFLEQHQLPHE
                     GIRIDEITGKRFTFFRDPDDLPLEFYEV"
     gene            3391..4260
                     /locus_tag="PXE92_000727"
     CDS             3391..4260
                     /locus_tag="PXE92_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5759999.1"
                     /translation="MLYLLIATLIWASSFIVGKVAISAFDPVQIMQIRLTLAAFIALP
                     FFIPAYKKIQKNQHIKVWLISFLTFPLYVILQFSGLKLTSAASAVALLGLNPLLTVLV
                     GYFCFKKQATRLDFILSLFACLGILIMASGSDDSGSINVLGLLLVTLGSLSFIVGMYL
                     SKEILQSVKVIDLTKIMLVQGAITALPITLLFAENWQLPTSLSAWASVAYLGIICTSL
                     AILLWNKGISQSSPILAGILLALEPVFGLLMALVFLSEQLSLVTWVGIIIVICTALLS
                     VLLPMMKRYKRLI"
     gene            4276..4989
                     /gene="sfsA"
                     /locus_tag="PXE92_000728"
     CDS             4276..4989
                     /gene="sfsA"
                     /locus_tag="PXE92_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HDL5760000.1"
                     /translation="MKFPPLSHGILLRRYKRFLADIQLPNGEQITLHCPNTGAMTGCA
                     NPGDTVWFSTSHNPKRKYAHTWELTQTQAGDFICVNTLRANQLVQEALENQWISELAD
                     YQHILPEQKYGSENSRIDFLLKSDLLPDCFVEVKSTTLLTENGVGMFPDAKTERGQKH
                     LRELTKIAEQGLQAVIFFAILHTGIERFEVAKQIDPKYAELFAQAIAQKVQVLSYKMA
                     ISLENGQPIAATLTKKCEF"
     gene            5050..5571
                     /gene="hslV"
                     /locus_tag="PXE92_000729"
     CDS             5050..5571
                     /gene="hslV"
                     /locus_tag="PXE92_000729"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDL5760001.1"
                     /translation="MTTIVCVRKDGKVAIGGDGQATLGNCIEKGTVRKVRRLYKDKVV
                     TGFAGSTADAFILRDLFEKKLELHQGHLVKSAVELAKEWRTERALRRLEAMMIVANDS
                     EFLLVSGSGDVIEPEQDVLAIGSGGNYAKAAALALLRTENNLSAKEIVAEALKIAGDI
                     DIYSNYNHVIEEV"
     gene            5828..7153
                     /gene="hslU"
                     /locus_tag="PXE92_000730"
     CDS             5828..7153
                     /gene="hslU"
                     /locus_tag="PXE92_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HDL5760002.1"
                     /translation="MMSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDL
                     RQEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LADVSMKLVRQQAVEKNKMRAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRK
                     KLREGQLDDKEIEIDVAAQVSVEIMTPPGMEEMTSQLQSLFEGMSPSKTKKRKMKIKD
                     ALKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQ
                     RDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQGRLPIRVELKSLT
                     KEDFERILTEPNASLTLQYRELMKTEGVEIEFTKDGISRIAESAFRVNEKTENIGARR
                     LHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENEDLSRFIL"
     gene            7229..8107
                     /locus_tag="PXE92_000731"
     CDS             7229..8107
                     /locus_tag="PXE92_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 domain-containing protein"
                     /protein_id="HDL5760003.1"
                     /translation="MKNLYKWPAAQSLYPNQGKKSYAGKRFRYRLRSWLHHSKIKQFE
                     QFVTQNPQLIPLLNARPNYSYPVAHRFLDKRFSAKQRLQKITDNLLFLPQKLAHLPPL
                     WEQAVNFGEIIADFELWLNINEHQPMEGFWALELRHRPTNQLVYLLTFGKLDEALLIA
                     VIQGPNFEGSKELVKQLTKSCHGLRPAYLMVETMKALTAVLGYQSLLGIPQKYQNKSR
                     WVQSKRYVVDYDAIFAESGGKPGNYWQLPLELESKKIDEIPSKKRSMYRKRYEMLANL
                     KQTMELMLKTYTGLNG"
     gene            complement(8177..8893)
                     /locus_tag="PXE92_000732"
     CDS             complement(8177..8893)
                     /locus_tag="PXE92_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5760004.1"
                     /translation="MKKTLLTLLFGCVVTAQAQDIKFVMEPSYPPFEMTEEKGEIIGF
                     DVDIANAICKEMNANCTFHSQPFDSLIQSLKQKQFDAAISGMGITEPRKKQVLFSEPY
                     FPSSAAFIAKKDTDFAKVKTIGVQNGTTYQHYLAKEKKEYNVKSYASYQNAILDVQNG
                     RIDAIFGDVPVLAEMARKHEGLDFVGEKINNPNYFGDGLGIATHLKNQVLVDQFNAAL
                     KTIKENGEYQKIYDKWMGGK"
     gene            9300..9803
                     /locus_tag="PXE92_000733"
     CDS             9300..9803
                     /locus_tag="PXE92_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-activating lysine-acyltransferase"
                     /protein_id="HDL5760005.1"
                     /translation="MNQSYFNLLGNITWLWMNSSLHKEWSCELLARNVIPAIENEQYM
                     LLIDNGIPIAYCSWADLNLETEVKYIKDINSLTPEEWQSGDRRWIIDWVAPFGHSQLL
                     YKKMCQKYPDMIVRSIRFYPKQKELGKIAYFKGGKLDKKTAKKRFDTYQEELATALKN
                     EFNFIKK"
     gene            9819..12680
                     /locus_tag="PXE92_000734"
     CDS             9819..12680
                     /locus_tag="PXE92_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX family hemolysin"
                     /protein_id="HDL5760006.1"
                     /translation="MGTRLTTLSNGLKNTLTATKSGLHKAGQSLTQAGSSLKTGAKKI
                     ILYIPQNYQYDTEQGNGLQDLVKAAEELGIEVQREERNNIATAQTSLGTIQTAIGLTE
                     RGIVLSAPQIDKLLQKTKAGQALGSAESIVQNANKAKTVLSGIQSILGSVLAGMDLDE
                     ALQNNSNQHALAKAGLELTNSLIENIANSVKTLDEFGEQISQFGSKLQNIKGLGTLGD
                     KLKNIGGLDKAGLGLDVISGLLSGATAALVLADKNASTAKKVGAGFELANQVVGNITK
                     AVSSYILAQRVAAGLSSTGPVAALIASTVSLAISPLAFAGIADKFNHAKSLESYAERF
                     KKLGYDGDNLLAEYQRGTGTIDASVTAINTALAAIAGGVSAAAAGSVIASPIALLVSG
                     ITGVISTILQYSKQAMFEHVANKIHNKIVEWEKNNHGKNYFENGYDARYLANLQDNMK
                     FLLNLNKELQAERVIAITQQQWDNNIGDLAGISRLGEKVLSGKAYVDAFEEGKHIKAD
                     KLVQLDSANGIIDVSNSGKAKTQHILFRTPLLTPGTEHRERVQTGKYEYITKLNINRV
                     DSWKITDGAASSTFDLTNVVQRIGIELDNAGNVTKTKETKIIAKLGEGDDNVFVGSGT
                     TEIDGGEGYDRVHYSRGNYGALTIDATKETEQGSYTVNRFVETGKALHEVTSTHTALV
                     GNREEKIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDAFNGGDGVDT
                     IDGNDGNDRLFGGKGDDILDGGNGDDFIDGGKGNDLLHGGKGDDIFVHRKGDGNDIIT
                     DSDGNDKLSFSDSNLKDLTFEKVKHNLVITNSKKEKVTIQNWFREADFAKEVPNYKAT
                     KDEKIEEIIGQNGERITSKQVDDLIAKGNGKITQDELSKVVDNYELLKHSKNVTNSLD
                     KLISSVSAFTSSNDSRNVLVAPTSMLDQSLSSLQFARAA"
     gene            12755..14881
                     /locus_tag="PXE92_000735"
     CDS             12755..14881
                     /locus_tag="PXE92_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_063101322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HDL5760007.1"
                     /translation="MEANHQRNDLGLVALTMLAQYHNISLNPEEIKHKFDLDGKGLSL
                     TAWLLAAKSLALKAKHIKKEISRLHLVNLPALVWQDNGKHFLLVKVDTDNNRYLTYNL
                     EQDAPQILSQDEFEACYQGQLILVTSRASVVGQLAKFDFTWFIPAVIKYRKIFLETLI
                     VSIFLQIFALITPLFFQVVMDKVLVHRGFSTLNIITVALAIVIIFEIVLSGLRTYVFS
                     HSTSRIDVELGAKLFRHLLSLPISYFENRRVGDTVARVRELDQIRNFLTGQALTSVLD
                     LLFSFIFFAVMWYYSPKLTLVILGSLPCYILWSIFISPILRRRLDEKFARSADNQAFL
                     VESVTAINMIKAMAVAPQMTDTWDKQLASYVSSSFRVTVLATIGQQGVQLIQKTVMVI
                     NLWLGAHLVISGDLSIGQLIAFNMLSGQVIAPVIRLAQLWQDFQQVGISVTRLGDVLN
                     SPTEQYQGKLSLPEIKGDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSG
                     KSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIAL
                     SDPGMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN
                     PKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEI
                     VEQGKHHELLQNSNGLYSYLHQLQLN"
     gene            14893..16329
                     /locus_tag="PXE92_000736"
     CDS             14893..16329
                     /locus_tag="PXE92_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_140441352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HDL5760008.1"
                     /translation="MKIWLSGIYEFFLRYKNIWAEVWKIRKELDHPNRKKDESEFLPA
                     HLELIETPVSKKPRLIAYLIMLFLVVAIVLASVSKVEIVATAPGKLTFSGRSKEIKPI
                     ENAIVQEIFVKDGQFVEKGQLLVSLTALGSDADIKKTMASLSLAKLENYRYQTLLTAI
                     EKESLPVIDLSRTEFKDSSEEDRLRIKHLIEEQYTTWQKQKTQKTLAYKRKEAEKQTI
                     FAYVRKYEGATRIEQEKLKDFKALYKQKSLSKHELLAQENKLIEAQNELAVYRSKLNE
                     LENDLLNVKEELELITQFFKSDVLEKLKQHIENERQLRLELEKNNQRRQASMIRAPVS
                     GTVQQLKIHTIGGVVTTAETLMIIVPEDDVLEATALVPNKDIGFVAAGQEVIIKVETF
                     PYTRYGYLTGRIKHISPDAIEQPNVGLVFNATIAIDRKNLTSPDGRKIDLSSGMTITA
                     EIKTGERSVMSYLLSPLEESVTESLRER"
     gene            16570..17568
                     /locus_tag="PXE92_000737"
                     /pseudo
     CDS             16570..17568
                     /locus_tag="PXE92_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250818.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     gene            17585..18328
                     /locus_tag="PXE92_000738"
     CDS             17585..18328
                     /locus_tag="PXE92_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5760009.1"
                     /translation="MKQKYIYGLAGLLLLLLGWQLGTALLSQRLPMASMLAPAKTWES
                     FTWLISSGEIFPHLWASLQRIAVGLLAALVIGVPLGLLLGFSKHLEMLCTPSFQLLRM
                     ISPLSWMPIIVMLLGVGDLPIYFLLAFATVWSLIISTTSGVKSIDPQWLQLGRVMSAT
                     RKELLCKIVVPAITGHVLTGLRVAVGIAWVVLVPCEMLGVNQGLGYFILDTRDRLAYS
                     ELMAVIIIIGLIGWALDSLIRLALAKGGR"
     gene            18483..19541
                     /locus_tag="PXE92_000739"
     CDS             18483..19541
                     /locus_tag="PXE92_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HDL5760010.1"
                     /translation="MSVLSSSFIQWLQQNAENLDQSNERADLLIPQIAALGLYKIGVP
                     ETLGGSGGTLVDAIKAVTELGNHSLAAAFVSWGHRTFIEHIIASKNPIPRQSYLADLL
                     NGNLTAGTGLSNAMKFLSGIEELNVNIREENGKRYLNGRLPWVTNLRSYRFVASFVAG
                     FQDERKPLVIAIPSTAKGLTRTKELEFIALQGTNTTSLVFENVELQDEWILADDAPEF
                     LAATRPAFLGLQFGLPFGLVERSLAEIEKSLPFRAILASEWQAQVDALNDIKTRLFNG
                     LNEEGYFVRNPKELFQARIDIVNVVAQTILLELQASGGRGYLKNDTSGFSRRWKEAAF
                     LPVVTPSAVQLRMVLANS"
     gene            complement(19662..20204)
                     /locus_tag="PXE92_000740"
     CDS             complement(19662..20204)
                     /locus_tag="PXE92_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL5760011.1"
                     /translation="MSQFQIHTIESAPETAQEALKAVQQANGFIPNLIGVLANAPTAL
                     ETYRTVGGINSRNSLTAEEREVVQITAAVVNGCGFCVAGHTKIALKALKMPEEVVNAL
                     RATARIDDNKLDTLARFTLAVMLQKAKLTEAQLNEFFAAGYNQQNAIDVILGVSLATL
                     CNYVNNIAEIPINPELQPFA"
     gene            complement(20356..21867)
                     /gene="glpK"
                     /locus_tag="PXE92_000741"
     CDS             complement(20356..21867)
                     /gene="glpK"
                     /locus_tag="PXE92_000741"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HDL5760012.1"
                     /translation="MEKQYIIALDQGTTSSRAVLLDKNANVVEVAQREFTQIYPQAGW
                     VEHNPMEIWSSQSSTLNEVVAKAGIKPDSIAAIGITNQRETTIVWEKETGKPVYNAIV
                     WQCRRTSDITDKLKADGHEEYIRKTTGLVVDPYFSGTKVKWILDNVEGAREKAERGEL
                     LFGTVDTWLVWKLTQGRVHVTDYTNASRTMLFNIHTKQWDDKMLELLNIPRSMLPEVK
                     NSSEVYGQTNIGGQGGVRIPVAGIAGDQQAALYGHLCVKEGQAKNTYGTGCFMLMHTG
                     NTAIQSENGLLTTIACNAKGEPEYALEGSVFIAGASIQWLRDELKIVHDSFDSEYFAT
                     KEDDSNGVYVVPAFTGLGAPYWDPYARGSIFGLTRGANRNHIVRATLESIAYQTRDVL
                     EAMQSDSKAKLQALRVDGGATANNFLMQFQADILDTKVERPKVKEVTALGAAYLAGIA
                     VGFWKDLEELKDKAEIERTFTPDGDQEKRAKRYKGWKKAVRRSLEWAKEDAEE"
     gene            complement(21871..22656)
                     /locus_tag="PXE92_000742"
     CDS             complement(21871..22656)
                     /locus_tag="PXE92_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HDL5760013.1"
                     /translation="MSKSLRNACIGEFIGTGFILFFGAGCVAAAQVAGANFGLWEISI
                     VWGLGVSMAIYISAGISGAHLNPAVTIALAAFYGFEKHKILPYVIAQVAGAFCSVALI
                     YFMYSDLFTAAEAAQGITRGETVGFAGVFSTYPNPNITLVTAFIVEFVITVVLMSTIL
                     AIGDDKNGLPNKALAALLIGLLIAVIGGATGPLTGFAMNPARDFGPKLFAYLAGWGEI
                     ALTGGKEIPYFIIPIVAPICGALFGAWGYKNLIHNNLPANTQE"
     gene            22869..23228
                     /locus_tag="PXE92_000743"
     CDS             22869..23228
                     /locus_tag="PXE92_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CrcB family protein"
                     /protein_id="HDL5760014.1"
                     /translation="MISIGAVLGAMCRWQLAVWLNPILSQFAFGTLAANWLGCLLIGI
                     AMGFNLGESQRLLFISGFLGSFTTFSSFSLELTEKLLAEKWGQFVTVLSLHLIGGLLL
                     TLIGVMLARAVTSGRFC"
     gene            complement(23276..24598)
                     /locus_tag="PXE92_000744"
     CDS             complement(23276..24598)
                     /locus_tag="PXE92_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5760015.1"
                     /translation="MSAMFIIQFAIVLLCILVGARVGGIGLGVFGGLGLAILSFGFGL
                     KPAGLPIDVMFMIMAVVSAAAAMQAAGGLDYMIKIATRILRKNPKYITFIAPLVTWTF
                     TVLAGTGHVAYSVLPVIAEVSRHNGIRPERPLSMAVIASQFAIVASPIAAAVVAVVAF
                     LEPQGVTLGNVLSVTIPATLLGLGLACVFVNKMGKELKDDPNYQRLLQDPEYVKENHI
                     TTNPTELPLKPTAKLSVGLFLFGALLVVLMGAIPALRPVFDGKPMGMAHTIEIVMLSI
                     GALIIFFCKPDGNEITKGSVFHAGMRAVIAIFGIAWLGDTLMQGHMDEVKSMVSGLVE
                     TAPWAFAFALFVLSVLVNSQGATVATLFPVAIAIGIPAPVLIGVFVAVNGYFFIPNYG
                     PIIASIDFDTTGTTRIGKYIFNHSFMLPGLLSMIFSIGFGLLLSNILL"
BASE COUNT         7465 a         5001 c         5163 g         7051 t
ORIGIN      
        1 ttttgaacgc ataatactaa aaattgagca atttcttagt agttagccgg aaagctcaaa
       61 aagaaaaccc tgatgattac tcatcagggc ttcagaatat ggctcctcct gcgggactcg
      121 aacctgcgac atatggatta acagtccacc gttctaccga ctgaactaag gaggaattga
      181 tggtgcctcg aggcggaatc gaaccaccga cacggggatt ttcaatcccc tgctctaccg
      241 actgagctat cgaggcaacg tcgttgcgtg gtgcattatg ctgatttcag cttgcaacgt
      301 caaacgtttt tttgcaaatt taaaaaaacc gctgctcaaa tgtgcttttt ttatactttt
      361 cggctaaaaa acagcataat tcacacatta acgaatattg cgatatttct ctctggcggt
      421 ggttactttt cttaaataat ttctagcttg agaagatgga tgagcagtgg ttaaaattcg
      481 ataaaccgca tcagacgaaa gatcgttaat tctatcaatc gcagagtatc ggtctgaatc
      541 aaacactcgt aataccgcac ctgctccgct attgtatgca gaaatcattg catagcgttt
      601 agccacagga tcttcaattc catctaagta ttcatcacgc aaaatagtca aataaagcgt
      661 acctgcatca atgttatttg atggattata aagatattca cgacttggct gccctcccat
      721 acctttacgg gcaaaaatat cacgcccggc ggtacgaggt acaacctgca ttaagccaat
      781 cgcattggca tagctgatgg cataagggtt gaatgctgat tcgacttcca taatccctaa
      841 aatcaaactt ggctcaatac catactgctt cgccatttta cgcaccagcg gtaaatattg
      901 tctggcacgt acttcaatgt gtcctgccac cattttaatc gttacaaagc tcacagtttg
      961 accatttttc aaacggcgtg tttgcacctt attttgcaac aaataagtcg caaaatcatt
     1021 ggcgatggca acattggtaa tatttcgccc gaattgatct tcaacctgtc cgtttaggaa
     1081 agggttagag ctaatcggtg catcgcctga ggcaaataaa tcaatccctt tcgggtctct
     1141 gcccattaat aaagtatgaa taatcgaatt gcgtagatga ttctgattcc ctaaagtctc
     1201 aatcgtaatc accccttctt caaacgaaat atggctacgg gtgtaaaact tatccgtata
     1261 tttcacataa tctttcttac tggcaactaa cagctcgtta cttccccaaa tatcatcaat
     1321 attgtgagaa aactgccctg ccaaaatatc caaaccattg gtatctttag aataatctac
     1381 tcgggtagat tttggcttct tagtcgattt attgctccca caagcaataa gaaacggaat
     1441 aattgccaac atcggcaaat atttagcata ttttttcatt gtgatttaac ctttattatt
     1501 cgaccggctt atagccttcg atgatgatct ctttaccttc aaataaaaaa ttgaccatct
     1561 cttgttcgag cagtttacgg tgttcggggt tcatcatact gagttttttc tcattgacga
     1621 tcattgtctg ttttttaatc cactcagacc acgcttgctt gctgattgag tcaaaaatac
     1681 gcttacccag ctcccccgga taaagttgaa aatctaaacc ttctgcctct tgttttaaat
     1741 attcgcaaaa tacggtacga gccataattt aatccttaat ctcatttttc acactgaatg
     1801 ccagctcatc taaaatacgt ttaaccggcg ttgctaaacc cacttcgtta tgttggtgca
     1861 aatcatacca ataatccgca tttgaagata ccttagaaag ataatttcct gctttttctt
     1921 cgacaacaag cggtgaattt tcacttgttt ttttcaaatc ggtttctact aaaaccgggg
     1981 taatatccaa atgaaaatgg ctaaaagtat gcctaaatgc agttaattgc tgtgaaattt
     2041 gcaaattttg cataaaatca gaccgcttga gagcctctaa gctctcaaat tgcggaaaca
     2101 caaataagcc cccccaaatg ccttttgctt cccgtttttg taacagcact ttcgagccgc
     2161 ttttcagcac taaaaaatag gtttgacgct ccggcaaggt ttttttcggt ttcttggcag
     2221 gaaagctatc ccacgcttgc attgcattcg ttttacaatt ttcttgtagc gggcagagca
     2281 agcacttagg ctttgtacgg gtgcaaatca tcgcccctaa atccatcatc gcttggttaa
     2341 agtctgccac ttgggtatca ggcgtcacac tttcgcttaa ttgccaaagg cgattttcca
     2401 ccgctttttc acccgcccag ccttctactg caaaatagcg gcttaacacc cgtttgacat
     2461 tgccatctaa aatcgggtgt ggggcatcta acacagaaga caaaatcgcc cctgcagtac
     2521 ttctgcccac tccggttaat gccaacacat catcaaatcg ggtaggaaat tcaccgccaa
     2581 actcatctcg aatttgaatt gccgctttat gcaaatttct tgcccgagcg taataaccca
     2641 gccctgtcca caaatgcaat acttcatcaa tcgaggcatt agctaagtca attacggtgg
     2701 gaaatcgttc cataaaacgt gcaaaataag gaataacggt cgctacttga gtttgttgca
     2761 acattacctc cgacaaccaa acctgataca gcgttttatt ttgctgccaa ggtaaatgtt
     2821 tccgcccata ttgctcaaac caagctaaaa cagctttggc aaacggatca gaagcttttg
     2881 ctttcgctaa aggaaatggg gaattgctgt tcattaaaaa tcttgaaatc cgaaaaataa
     2941 attatcatac tgcaagcggt cagttttacc aaaaatttta cacattaagg aaaaaagatg
     3001 aaatcgccca ttttaggttt ccaccacatt gcattaattg tttccgatta cgaaaaatcc
     3061 aaacatttct acacccgcat tttaggggca gagatcatcg cagaaaccta ccgagagcaa
     3121 cgtgccagct ataaattaga tttacgcttt aaagatggct cacaaattga attattcagt
     3181 tttcctgaaa cgccgcctcg tttcacctcg cccgaaacct gcgggcttcg ccatttggca
     3241 tttcgagtgg aaaatattga atatgccatc gcatttttag aacaacatca attaccgcat
     3301 gaagggatcc gaattgatga gatcaccggc aaacgcttca cgtttttccg agatccggac
     3361 gatctgccgt tagagtttta cgaggtctaa atgttatatt tactgattgc aaccctgatt
     3421 tgggcgagtt cattcattgt aggtaaagtg gcgatttcag cctttgaccc tgtccaaatt
     3481 atgcaaattc ggctgacgtt agcggcgttt atcgctctgc cgttttttat tcctgcgtat
     3541 aaaaaaatcc agaaaaatca gcacattaaa gtctggctga ttagttttct cacttttcct
     3601 ctgtacgtga tcttacaatt ttccggcttg aaattaactt ccgcagcaag tgccgtggca
     3661 ctactcgggc taaacccgct tttaactgtg ttagtcggct atttttgttt caaaaaacag
     3721 gcaaccaggc tcgattttat cctaagttta tttgcctgct tggggatttt aattatggca
     3781 tcgggtagcg atgatagcgg ttcaatcaat gtattaggat tattgcttgt aaccttaggc
     3841 agtttaagtt ttattgtggg aatgtacctc agcaaagaga ttctgcaatc agtaaaagtg
     3901 atcgatttaa ccaagatcat gctggtgcaa ggggcaatta ccgccttacc tattacctta
     3961 ctctttgcag aaaattggca actgccaacc agtctctcag catgggcgag cgtagcatat
     4021 ttaggcatta tttgtaccag cttggcaata ttgttatgga acaaaggcat cagccaatct
     4081 tcgcctattc ttgcaggtat tctactcgca cttgaaccgg tattcggact gctaatggca
     4141 ttggtctttt tatcagaaca gctcagttta gtgacttggg ttgggattat tattgttatt
     4201 tgcaccgcct tactctccgt tttgctaccg atgatgaaaa gatacaagcg gttaatttaa
     4261 caggattttt tgcaaatgaa atttccccct ctttcccacg gcattttact tcgccgttat
     4321 aaacgttttc ttgccgatat tcagttgcca aatggcgaac aaattaccct ccattgccca
     4381 aataccggtg cgatgacagg ctgtgccaac cccggtgata cagtttggtt ttccacctct
     4441 cataacccca aacgtaaata tgctcacact tgggaactaa cccaaaccca agcgggggat
     4501 tttatttgtg tcaatacctt gagagccaat cagcttgtac aagaagcctt ggaaaatcaa
     4561 tggattagcg agcttgcgga ttatcagcac attctgcctg aacaaaaata tggcagtgaa
     4621 aacagtcgga ttgatttttt gctcaaatcg gaccttctgc cggattgttt tgtggaagtg
     4681 aaatctacca cccttttaac cgaaaacggt gtgggaatgt tccccgatgc caaaaccgag
     4741 cgggggcaaa aacatttgcg ggagctgacg aaaatcgctg aacagggctt acaagcggtc
     4801 atttttttcg ctattttgca cacaggtatt gaacggtttg aagtggcaaa gcagatagac
     4861 cccaaatatg ccgaattatt cgctcaagcc attgcacaaa aagtgcaggt tctctcctat
     4921 aaaatggcaa tttcattgga aaacgggcaa cctattgcgg caaccttaac aaagaaatgt
     4981 gagttttaag cttgaaaaca cacagcatat ccccatataa gccaaagttt ttaaaaagaa
     5041 ggatttagta tgacaacgat tgtatgcgtg cgtaaagacg gaaaagtggc tatcggtggt
     5101 gatggtcagg caacgcttgg aaattgtatc gagaaaggca cggtgcggaa agttcgccgt
     5161 ttgtataaag acaaagtggt gacaggcttt gccggctcga ccgctgatgc ctttattttg
     5221 cgtgatttat tcgagaaaaa attggagtta caccaagggc atttagtgaa atcggcagtg
     5281 gaactggcaa aagagtggcg taccgagcgt gctttacgcc gtttagaagc gatgatgatt
     5341 gtcgccaatg acagcgagtt tttattggtt tcaggttcgg gcgatgtgat tgagccggag
     5401 caagatgtgc tggcgattgg ttcaggcggt aactatgcga aagccgctgc tcttgcgtta
     5461 ttacgcaccg aaaataattt atctgcaaaa gaaatcgttg cggaagcgtt aaaaatcgcc
     5521 ggcgatattg atatttacag taactacaat cacgtgattg aagaagttta gttaaataac
     5581 tctctcccct tgtgggacaa atgtttacat ttgaacgttg gctttgccaa cggctccaca
     5641 ggagcgagcg tagcgagtat tgagaccgaa aaatatttcg ttcagaaata tttttcagag
     5701 agaggggtta atgcaaaacg tttaagaaaa aagaccgctt gttaccctct ccctgatttt
     5761 tcttctgaac aaagaaaaat ctgtccctct cccacaaggg gagagggtaa ttaatttaag
     5821 gaataacatt atgtcaatga caccccgtga aatcgtctca gaattagacg cacacattat
     5881 cggacaaaaa gatgcaaaac gtgcggtagc aattgctttg cgtaaccgct ggagaagaat
     5941 gcagttgccg gaagatctcc gccaagaagt gacccccaaa aatattttaa tgatcggtcc
     6001 gaccggtgtg ggtaaaaccg aaatcgcccg ccgtttggcg aagcttgcca atgccccttt
     6061 tatcaaagtt gaggcaacca aattcactga agtggggtat gtgggtaaag aagtggattc
     6121 gattatccgt gatctagctg atgtgtcgat gaaattagtc cgccaacaag cggtcgaaaa
     6181 aaataaaatg cgtgcacaag atgcagcgga agatcgcatt ttagacgtat tattgccacc
     6241 ggcgaaagat cagtggggaa atgtgcagga atccgacaat aattctaccc gccaaacttt
     6301 ccgcaaaaaa ttgcgtgaag ggcaattaga cgataaagag attgaaattg acgtggcagc
     6361 tcaagtgagc gttgagatta tgaccccgcc gggaatggaa gagatgacct cgcaattaca
     6421 atcgctgttt gagggaatgt cgccaagcaa aaccaaaaaa cgcaaaatga aaatcaaaga
     6481 tgcgttaaag gtgatgcttg atgaagaagc ggcgaaatta gtaaatcctg aagagctgaa
     6541 acagcaagcg attgaagcgg tggaacagca cggtattgtc tttattgatg agatcgacaa
     6601 aatctgtaaa aaaggcgagc attcgggtgg agatgtttct cgtgaaggtg ttcagcgtga
     6661 tttacttcca atcattgaag gctcaacggt aaataccaag catggtatgg tgaaaaccga
     6721 ccatattctg tttatctgct cgggggcatt ccaagtggct cgcccgtctg atttactccc
     6781 agaattacag ggtcgcttgc cgattcgtgt ggagttaaaa tcgcttacca aagaagattt
     6841 tgagcgtatt ttaaccgaac cgaatgcctc attaaccttg caatatcgtg agttgatgaa
     6901 aactgaaggc gtggagattg agttcactaa agacggtatc agccgtattg cagaaagtgc
     6961 attccgtgtg aacgagaaaa ccgaaaacat cggggcaaga cgtttacaca ccgtgcttga
     7021 gcgtttgatg gacggcattt cgttcgatgc cagcgaacgc cgtggtgaaa aaatcatcat
     7081 tgatgaaaac tatgtttccg aagcgttaaa tgacgtggtg gaaaacgaag atttaagtcg
     7141 ctttattttg tagttttaag ttatacaagc ggttatttta gcgaaaaatc ttgcgaatta
     7201 gccgcttttc atattgttag ttgtaaaaat gaaaaatcta tacaaatggc ctgctgcaca
     7261 atcgctttat ccaaatcagg gaaagaagtc ttacgcaggg aaacgttttc gttaccgtct
     7321 tcgctcttgg ttgcatcatt ccaaaatcaa gcaatttgag cagttcgtta cacaaaatcc
     7381 acaactgatt ccgctcttaa atgctcgacc aaattacagc taccccgtgg ctcaccgctt
     7441 tttagataag cgtttcagtg caaaacaacg cttacaaaaa atcacagata acctgctgtt
     7501 tttaccgcaa aaattggctc atttaccacc tctatgggaa caagcggtca attttggtga
     7561 aattattgca gattttgagt tatggcttaa catcaatgaa catcagccga tggaaggttt
     7621 ttgggcatta gaacttcgcc acagaccgac taatcagcta gtttatttat taacatttgg
     7681 taagttagat gaagccttgt tgatagccgt aattcaaggt ccgaattttg aaggttcaaa
     7741 agagctggtg aaacaattaa ccaaaagttg ccacggctta cgcccggcct atttaatggt
     7801 tgaaacgatg aaggctttaa cggctgttct tggctatcag agtttactag gcattccaca
     7861 gaaataccag aataaatccc gctgggtgca aagtaagcgc tatgtagtgg attatgatgc
     7921 tatttttgcg gaatcgggcg gaaagccggg aaattattgg cagttacccc ttgaattgga
     7981 aagtaaaaaa atagatgaaa ttccaagcaa aaaacgctca atgtatcgca agcgttatga
     8041 aatgctagct aatttaaagc agaccatgga gcttatgctt aaaacttata ctggcttaaa
     8101 tgggtaaatc aaagaataca agcggtcaaa atctgcaaaa ctttgcaaaa ctttgcaaaa
     8161 aatgaccgct tacaagttac ttgccgccca tccatttatc atagattttt tgatattcgc
     8221 cattctcttt aatcgttttt aatgctgcat tgaattgatc aactaatact tggtttttca
     8281 agtgagttgc aatgcctaaa ccatcaccaa aatagtttgg attattgatt ttctccccta
     8341 caaaatctag cccttcgtgt tttcttgcca tctcagccaa taccggcaca tcgccaaaaa
     8401 tagcatcaat tcgcccattt tgcacatcta aaatagcatt ttgataagag gcataagatt
     8461 tcacattgta ctcttttttc tcttttgcta aatagtgttg gtaagtagtc ccattttgca
     8521 caccaatcgt tttcacctta gcaaaatctg tatctttttt cgcaatgaag gcagcagagc
     8581 ttggaaagta aggctcgcta aataatactt gtttcttacg tggttccgta atacccatac
     8641 ctgaaattgc agcatcaaat tgtttttgtt ttaggctttg gattaagcta tcaaaaggtt
     8701 ggctatggaa tgtacaattt gcattcatct ctttacagat agcatttgca atatccacat
     8761 caaaaccgat aatttctccc ttctcttcgg tcatttcaaa tggaggatag cttggctcca
     8821 tcacaaattt gatatcttgt gcctgcgcag taaccacaca cccgaataaa agggtcaaaa
     8881 gtgttttttt cataaaaagt ccctgtgttt tcattataag gattaccact ttaacgcagt
     8941 tactttctta aaaaaagtct tcttttcata aagtttgttt tatgtcatac aaacacatca
     9001 aattgagatg tagtttctca atcctcttga ttcctctatc tcaaaaaaac aacccaaaag
     9061 aaaaaagaaa agtatatgtt acattaatat tacaatgtaa ttattttgtt taatttccct
     9121 acattttgta taactttaaa acactccttt ttctcttctg attatataaa agacaaaaaa
     9181 tacaatttaa gctacaaaaa acaacaaaaa acaacaaaaa acacgacaat aagatcgagt
     9241 aatgattata ttatgttata atttttgacc taatttagaa taattatcga gtgcaaatta
     9301 tgaatcaatc ttattttaac ttactaggaa acattacttg gctatggatg aactcctccc
     9361 tccacaaaga atggagctgt gaactactag cacgcaatgt gattcctgca attgaaaatg
     9421 aacaatatat gctacttata gataacggta ttccgatcgc ttattgtagt tgggcagatt
     9481 taaaccttga gactgaggtg aaatatatta aggatattaa ttcgttaaca ccagaagaat
     9541 ggcagtctgg tgacagacgc tggattattg attgggtagc accattcgga cattctcaat
     9601 tactttataa aaaaatgtgt cagaaatacc ctgatatgat cgtcagatct atacgctttt
     9661 atccaaagca gaaagaatta ggcaaaattg cctactttaa aggaggtaaa ttagataaaa
     9721 aaacagcaaa aaaacgtttt gatacatatc aagaagagct ggcaacagca cttaaaaatg
     9781 aatttaattt tattaaaaaa tagaaggaga catcccttat gggaactaga cttacaaccc
     9841 tatcaaatgg gctaaaaaac actttaacgg caaccaaaag tggcttacat aaagccggtc
     9901 aatcattaac ccaagccggc agttctttaa aaactggggc aaaaaaaatt atcctctata
     9961 ttccccaaaa ttaccaatat gatactgaac aaggtaatgg tttacaggat ttagtcaaag
    10021 cggccgaaga gttggggatt gaggtacaaa gagaagaacg caataatatt gcaacagctc
    10081 aaaccagttt aggcacgatt caaaccgcta ttggcttaac tgagcgtggc attgtgttat
    10141 ccgctccaca aattgataaa ttgctacaga aaactaaagc aggccaagca ttaggttctg
    10201 ccgaaagcat tgtacaaaat gcaaataaag ccaaaactgt attatctggc attcaatcta
    10261 ttttaggctc agtattggct ggaatggatt tagatgaggc cttacagaat aacagcaacc
    10321 aacatgctct tgctaaagct ggcttggagc taacaaattc attaattgaa aatattgcta
    10381 attcagtaaa aacacttgac gaatttggtg agcaaattag tcaatttggt tcaaaactac
    10441 aaaatatcaa aggcttaggg actttaggag acaaactcaa aaatatcggt ggacttgata
    10501 aagctggcct tggtttagat gttatctcag ggctattatc gggcgcaaca gctgcacttg
    10561 tacttgcaga taaaaatgct tcaacagcta aaaaagtggg tgcgggtttt gaattggcaa
    10621 accaagttgt tggtaatatt accaaagccg tttcttctta cattttagcc caacgtgttg
    10681 cagcaggttt atcttcaact gggcctgtgg ctgctttaat tgcttctact gtttctcttg
    10741 cgattagccc attagcattt gccggtattg ccgataaatt taatcatgca aaaagtttag
    10801 agagttatgc cgaacgcttt aaaaaattag gctatgacgg agataattta ttagcagaat
    10861 atcagcgggg aacagggact attgatgcat cggttactgc aattaatacc gcattggccg
    10921 ctattgctgg tggtgtgtct gctgctgcag ccggctcggt tattgcttca ccgattgcct
    10981 tattagtatc tgggattacc ggtgtaattt ctacgattct gcaatattct aaacaagcaa
    11041 tgtttgagca cgttgcaaat aaaattcata acaaaattgt agaatgggaa aaaaataatc
    11101 acggtaagaa ctactttgaa aatggttacg atgcccgtta tcttgcgaat ttacaagata
    11161 atatgaaatt cttactgaac ttaaacaaag agttacaggc agaacgtgtc atcgctatta
    11221 ctcagcagca atgggataac aacattggtg atttagctgg tattagccgt ttaggtgaaa
    11281 aagtccttag tggtaaagcc tatgtggatg cgtttgaaga aggcaaacac attaaagccg
    11341 ataaattagt acagttggat tcggcaaacg gtattattga tgtgagtaat tcgggtaaag
    11401 cgaaaactca gcatatctta ttcagaacgc cattattgac gccgggaaca gagcatcgtg
    11461 aacgcgtaca aacaggtaaa tatgaatata ttaccaagct caatattaac cgtgtagata
    11521 gctggaaaat tacagatggt gcagcaagtt ctacctttga tttaactaac gttgttcagc
    11581 gtattggtat tgaattagac aatgctggaa atgtaactaa aaccaaagaa acaaaaatta
    11641 ttgccaaact tggtgaaggt gatgacaacg tatttgttgg ttctggtacg acggaaattg
    11701 atggcggtga aggttacgac cgagttcact atagccgtgg aaactatggt gctttaacta
    11761 ttgatgcaac caaagagacc gagcaaggta gttataccgt aaatcgtttc gtagaaaccg
    11821 gtaaagcact acacgaagtg acttcaaccc ataccgcatt agtgggcaac cgtgaagaaa
    11881 aaatagaata tcgtcatagc aataaccagc accatgccgg ttattacacc aaagatacct
    11941 tgaaagctgt tgaagaaatt atcggtacat cacataacga tatctttaaa ggtagtaagt
    12001 tcaatgatgc ctttaacggt ggtgatggtg tcgatactat tgacggtaac gacggcaatg
    12061 accgcttatt tggtggtaaa ggcgatgata ttctcgatgg tggaaatggt gatgatttta
    12121 tcgatggcgg taaaggcaac gacctattac acggtggcaa gggcgatgat attttcgttc
    12181 accgtaaagg cgatggtaat gatattatta ccgattctga cggcaatgat aaattatcat
    12241 tctctgattc gaacttaaaa gatttaacat ttgaaaaagt taaacataat cttgtcatca
    12301 cgaatagcaa aaaagagaaa gtgaccattc aaaactggtt ccgagaggct gattttgcta
    12361 aagaagtgcc taattataaa gcaactaaag atgagaaaat cgaagaaatc atcggtcaaa
    12421 atggcgagcg gatcacctca aagcaagttg atgatcttat cgcaaaaggt aacggcaaaa
    12481 ttacccaaga tgagctatca aaagttgttg ataactatga attgctcaaa catagcaaaa
    12541 atgtgacaaa cagcttagat aagttaatct catctgtaag tgcatttacc tcgtctaatg
    12601 attcgagaaa tgtattagtg gctccaactt caatgttgga tcaaagttta tcttctcttc
    12661 aatttgctag agcagcttaa tttttaatga ttggcaactc tatattgttt cacacattat
    12721 agagttgccg ttttatttta taaaaggaga caatatggaa gctaaccatc aaaggaatga
    12781 tcttggttta gttgccctca ctatgttggc acaataccat aatatttcgc ttaatccgga
    12841 agaaataaaa cataaatttg atcttgacgg aaaagggctt tctttaactg cttggctttt
    12901 agctgcaaaa tcgttagcgt tgaaagcgaa acacattaaa aaagagattt cccgcttaca
    12961 cttggtgaat ttaccggcat tagtttggca agataacggt aaacattttt tattggtaaa
    13021 agtggatacc gataataacc gctatttaac ttacaatttg gaacaagatg ctccacaaat
    13081 tctgtcacaa gacgaatttg aagcctgcta tcaagggcag ttaattttgg tcacgtccag
    13141 agcttccgta gtaggtcaat tagcaaagtt cgatttcacc tggtttattc cggcggtgat
    13201 caaataccga aaaatctttc tagaaacctt gattgtttcg atctttttgc aaatttttgc
    13261 cctaattaca ccgctattct tccaagttgt tatggataaa gtactggtgc atcgaggttt
    13321 ttcaaccttg aatatcatta cggttgcctt agctattgtg atcatctttg aaattgtact
    13381 aagtggtttg agaacctatg ttttttctca tagcactagc cgtattgatg ttgaattagg
    13441 cgctaaatta tttcgacatt tattatcact acccatttct tattttgaaa acagacgagt
    13501 tggagataca gtcgctaggg ttagagaatt agatcaaatt cgtaatttcc ttaccggaca
    13561 agcattaacc tcggtgttag atctcttatt ctcttttatc ttttttgccg taatgtggta
    13621 ttacagccca aaattaacct tggtaattct tggttcattg ccctgctata ttttatggtc
    13681 aatttttatt agtccgattt taagacggcg tttagatgag aaatttgccc gaagtgctga
    13741 taaccaagca ttcttagttg agtcggtaac agccatcaat atgattaaag cgatggcggt
    13801 tgctccacaa atgacggata catgggataa acagctggca agctatgttt catcaagttt
    13861 ccgtgtcacc gtattagcaa ccattgggca acaaggtgta caacttattc aaaaaaccgt
    13921 tatggtgatt aacctttggt taggggcaca cttagttatt tcaggcgatc tgagtattgg
    13981 gcaattaatt gcctttaata tgctatcagg gcaagtgatt gcaccggtga ttcggctggc
    14041 tcagctctgg caagatttcc aacaagttgg gatttccgtc actcgcttag gtgatgtttt
    14101 aaactctcca accgaacaat atcaaggcaa attatcacta ccagaaataa aaggcgatat
    14161 ctcatttaaa aatatccgct ttagatataa accagatgca ccaactattt taaataatgt
    14221 gaatttagaa attaggcaag gagaagtgat tgggattgtt ggacgttccg gttcaggcaa
    14281 aagtactctg actaaattac tgcaacgttt ttatattcct gaaaatgggc aggttttgat
    14341 tgatggacat gatctagcct tagctgatcc aaactggcta cgccgtcaaa taggtgtagt
    14401 gctgcaagat aatgtgttat taaaccgcag tatccgagaa aatattgcgc tatcagatcc
    14461 aggaatgcca atggagcgag taatttatgc agcaaaatta gcaggggctc acgattttat
    14521 ttcagaattg cgtgaaggtt ataacaccat tgtgggtgaa caaggagcgg ggctttcagg
    14581 cgggcaacgc caacggattg cgattgctcg agctttggta aacaacccga aaatcctgat
    14641 ttttgatgag gcaaccagtg ccctcgatta cgaatctgag catattatta tgcaaaatat
    14701 gcaaaaaata tgccaaggca gaaccgtgat tttgattgca catcgtttat cgaccgtcaa
    14761 aaatgcggat cgaattattg tgatggaaaa gggggaaatt gttgagcaag gcaagcacca
    14821 cgaattactg caaaacagta acggacttta ttcctactta caccaattac aacttaatta
    14881 agaaggaaaa caatgaaaat atggcttagt ggtatttatg aatttttcct acgctataaa
    14941 aacatttggg cagaagtatg gaaaattcgt aaagaattag accacccaaa cagaaaaaaa
    15001 gacgaaagtg aatttttacc ggcacattta gaactgattg aaaccccggt ttctaaaaaa
    15061 ccacgtctaa ttgcttattt gattatgcta tttttagttg tggcaattgt gcttgccagt
    15121 gtaagcaaag ttgaaattgt ggcgactgct cccggtaaat taacttttag tggcagaagt
    15181 aaagaaatta aaccgattga aaacgccatt gtacaagaaa ttttcgttaa agatgggcag
    15241 tttgtggaaa aagggcaatt attagtcagc ttaactgcat tgggttctga tgcagatatc
    15301 aaaaagacca tggcttcact ttctttagct aaactggaga actatcgcta ccaaactttg
    15361 cttactgcca ttgaaaaaga gtccttgccg gtgattgatt tatctagaac cgaatttaaa
    15421 gattcatcgg aagaagatcg actacgtatt aaacacttaa ttgaggagca atacaccact
    15481 tggcaaaaac aaaaaacaca gaaaacttta gcgtataagc gtaaagaggc tgaaaaacaa
    15541 acaatatttg cctatgtccg taaatatgaa ggtgcaacac gtattgaaca agaaaaatta
    15601 aaagacttta aggcacttta taaacagaag tctttatcta agcacgaact tcttgcgcaa
    15661 gaaaataaat taattgaggc tcagaatgag ctagctgttt atcgctcaaa attaaatgaa
    15721 ttagaaaatg atctactcaa tgtaaaagaa gaacttgaat tgatcacgca attctttaaa
    15781 agcgatgtgt tggaaaaatt aaagcaacat attgaaaatg aacgccaact tcggctcgag
    15841 ttagaaaaaa ataatcaacg cagacaggcc tcgatgatca gagcaccggt ttccggtacg
    15901 gttcagcaac tgaaaattca cactataggt ggtgttgtta cgactgctga aaccttgatg
    15961 atcattgtgc cggaagacga tgtgttagag gccaccgctc tggttccaaa caaagatatc
    16021 ggctttgttg cagcagggca ggaggtgatt attaaagtgg aaactttccc ttatacacgc
    16081 tatggttatc taactggtcg aattaaacat attagcccgg atgcgattga acaacctaat
    16141 gtaggcttag tttttaatgc aactatagct atagatagga agaatctaac atcgcctgat
    16201 gggcgaaaaa ttgatttgag ttcaggtatg acaataactg ctgaaatcaa aaccggtgaa
    16261 cggagtgtaa tgagttattt actcagccca ttagaagaat ctgtcacaga aagtttaagg
    16321 gaacgctaat cgaaccaaaa caaagccata aaagccattt tgagctttta tggctttatt
    16381 ttttagtcca caagcggtca aaaaagccca attttttaca cttttataac aaattgttct
    16441 aactaaaaat tactaattct tttcttttat aagacgaatc ctctattttc atttcattaa
    16501 cattgaacta gaaaagggga tttatgagcc taagcattac gaatctttct cttggctacc
    16561 gcaaaaatca gcaaaggctt atttgaaaag cacggtgtgc aggtggaaaa accggtgatg
    16621 tttcgcagct gggctcagtt ggtggaagcc tttttaagtg gcaatgtgaa cgtggtgcat
    16681 ctgctttcgc ctatgagttt gtgggcgaaa tatggagcaa atgctccggt gaaagcggta
    16741 atgtggaatc acttggcagg ttcggcttta acggttcgcc ctgaaatcaa cagtattgcc
    16801 gaactctccg gcaaaacggt agcaattccg ttttggtatt caattcataa tatcgttttg
    16861 caacgattat tacgagaaaa tggcttgaaa atcaccgaaa aagagccgaa aagcggtgaa
    16921 gtgcgattaa gtgtaatggc tccgtcagat atggtggcag cgttggcaag tgaggcaatt
    16981 tccggcttta ttgtggcaga gccgttcaat gcgttagcgg aagccaaagg tgtggggaag
    17041 gtgctgcgtt ttagtggcga tgtgtggaaa gatcacgcct gctgtttaac cctaatgcac
    17101 gaatacgata ttcaacaccg cccggaatgg gtgcaaaaag tggtgaatgt cttaaccgaa
    17161 gcccaagtgt ccacgcttgc caaccgtgca gaaaccgctc aattattggc tcggggcagc
    17221 ggctacacgc cgcacgatca aaaagtgctg gaaaaggtac tggctccaac ccaagctcag
    17281 tgggataaat atatcgaaac aggggcaatt caaaaccctc agtggcacca acagcgaatc
    17341 ggtttccaac cgtatccgtt cgattcctat atggaagagc tggtcaaaat gctcaaacag
    17401 acccacattg ccggcaataa tgcgttttta caacagcttg acccggtaga ggcagcgaaa
    17461 gcgattaacg agccgacctt tgtgcgaaaa gcgattgagc aaggcggttg ggttgaaacc
    17521 tttaatttac aaaccggttg gacaagaacc gagcaaatta gtgtataagc gataggaacg
    17581 aacgatgaaa cagaaatata tttacggctt agccggttta ttactgctac ttttaggttg
    17641 gcagcttggc acagccttgt taagccaacg gttgccgatg gcgtcaatgt tagctccggc
    17701 aaaaacctgg gaaagtttta cttggctgat ttcctccggc gaaatttttc cgcacttatg
    17761 ggcgagtttg caacgcattg ctgtcgggct actcgctgcg ttagtgattg gtgtaccgct
    17821 gggcttattg ctcggcttct ccaagcacct tgaaatgctt tgcacgccgt cattccaact
    17881 actacgtatg atttcgccac tttcgtggat gccgattatc gtgatgttac ttggtgtagg
    17941 cgatttgccg atttattttt tactggcgtt tgccaccgtt tggtcgttga ttatttccac
    18001 cacctcaggg gtaaaaagca ttgatccaca atggttacaa ctgggtagag taatgtcggc
    18061 tacccgcaaa gaactgctgt gcaaaattgt tgtaccggct attaccggac acgttctcac
    18121 cggtttacgt gtggcggttg ggattgcgtg ggtggtgctg gtaccgtgcg aaatgctagg
    18181 cgtgaatcaa ggactcggct attttatttt agacacccga gaccgattag cctattccga
    18241 actgatggcg gtaattataa ttatcggctt aatcggctgg gcgttggata gcttaatccg
    18301 cttggcttta gcgaaaggcg gcagataaat tgacaagcgg tcgaaaaatt gcattttttt
    18361 gcaaaaaatc gaccgcttgt ttattcccaa aaagcatatt accttaattt attttatttc
    18421 tagggcataa aaaagcgatt taagatagcg acaaagtaaa ctaattatac gaggtaaaca
    18481 caatgtcggt tctttcatct tcttttattc aatggcttca gcagaacgcc gaaaatttag
    18541 atcaatctaa cgaacgagcg gatttactca ttccacaaat tgccgcacta gggctatata
    18601 aaatcggcgt gccggaaacg cttggcggca gcggtggcac tttggttgat gcgatcaaag
    18661 ccgttaccga actgggtaat cactcgctgg ctgcggcatt tgtttcgtgg ggacatcgta
    18721 cctttatcga gcatattatc gcctcaaaaa atcctattcc ccgccaaagc tatttggcgg
    18781 atctgctaaa tggcaattta accgcaggaa caggtttatc caatgcgatg aaatttctct
    18841 ccggcattga agagttgaat gtgaatattc gtgaagaaaa cggtaaacgc tatttaaatg
    18901 gccgcctgcc ttgggtaacc aatttacgtt cataccgctt tgttgctagt ttcgttgccg
    18961 gttttcaaga cgaacgcaaa ccgctagtga ttgcaattcc ctccaccgcc aaaggcttaa
    19021 cccgcaccaa agaattggaa tttatcgcat tgcaaggcac gaatactacc tctctcgtat
    19081 ttgagaatgt ggaattacaa gatgaatgga ttttggctga tgacgcgcct gagtttttag
    19141 cagccactcg ccctgcgttc ttaggtttac aatttggttt gccctttggc ttggttgaac
    19201 gtagtttggc ggaaatcgaa aaatcgctcc ctttccgtgc aattctcgcc tctgagtggc
    19261 aagctcaagt tgatgccctc aacgatatta aaactcgtct gtttaatggc ttaaatgaag
    19321 aaggttattt tgtgcgtaat ccgaaagagc ttttccaagc gagaattgac attgtcaatg
    19381 tcgtcgccca aactattctg ctagaactgc aagcgagtgg cggacgtggc tatctgaaaa
    19441 atgatacttc aggcttcagc cgccgttgga aagaagcggc atttctgccc gttgttacgc
    19501 caagtgcggt acagctgaga atggtgctgg cgaatagtta agcggataag agacaaattg
    19561 ttgcctcttt tattttgcaa aaaatagtct aaatataacc gcttgcaata aaaataaaaa
    19621 aggatgcatt ttttatgctt cctcaatttt acggctatct attatgcaaa aggctgcaat
    19681 tcagggttaa ttggaatttc ggcaatgttg ttaacgtagt tacataatgt tgccaagctc
    19741 acgcctaaaa tcacatcaat cgcattttgt tggttgtaac ctgcggcaaa aaattcgttt
    19801 aattgggctt cggttaattt ggctttttgt aacattactg caagggtgaa gcgagccaga
    19861 gtgtctaatt tgttatcgtc tatgcgagcc gtggcacgta aagcatttac cacttcttca
    19921 ggcattttta atgcttttaa ggcgatttta gtatgacctg ccacgcagaa accacagccg
    19981 ttgaccactg ctgcggtgat ttgtaccact tcacgttctt cagcggttaa gctgttacga
    20041 ctattaatac cacccacagt gcggtaagtt tccagtgctg ttggtgcgtt ggctaatacg
    20101 ccgatcagat ttgggataaa accgtttgct tgttgcactg cttttagggc ttcttgtgcc
    20161 gtttcaggag cggattcaat agtgtgaatt tgaaattgag acataaatgt tccttatcag
    20221 gttgtttatt ggtgtggctc atcataaaga aaaggctaat ttagaacaaa tcaaaatcac
    20281 tatttaatat aactaaaaga tcttaaaggg agtatagttg cctatactcc ctttgtttat
    20341 gcacaggttg cgtttttact cttctgcgtc ttcttttgcc cattctaatg agcggcgaac
    20401 ggcttttttc caacctttat agcgtttcgc ccgtttttct tggtcgccgt ccggtgtgaa
    20461 ggtgcgttca atttccgctt tgtctttcag ttcttccaaa tctttccaga agccgacagc
    20521 aatacccgca agataagctg cccctaaagc agtgacttct ttcactttcg gacgctcaac
    20581 tttggtgtct aaaatatcgg cttggaactg cattaagaag ttgtttgcgg ttgcaccacc
    20641 gtccacacgt aacgcttgta gtttcgcttt ggagtcagac tgcattgctt ctaacacatc
    20701 tcgggtttgg taagcgatag actctagggt cgcacgcaca atgtggttac ggtttgcccc
    20761 acgggttaaa ccgaaaattg agcctcgtgc atacggatcc caatatggag cacctaagcc
    20821 ggtaaaggca ggtacaacat aaacaccgtt agagtcatct tctttagtgg caaaatattc
    20881 gctgtcaaag ctatcgtgaa caattttcag ctcatcacgc agccattgaa tagacgcacc
    20941 ggcaataaat actgaacctt ccaacgcata ttccggctcg ccttttgcgt tacacgcaat
    21001 ggtcgttaat aaaccgtttt cagattgaat cgcagtgtta ccggtgtgca tcaacataaa
    21061 acagcctgta ccataggtat tcttcgcttg tccttctttc acgcataaat gaccgtagag
    21121 agcggcttgt tggtcacctg caatacccgc gaccggaata cgcacaccgc cttgaccgcc
    21181 gatattagtt tgcccgtaaa cttctgatga atttttcact tcaggtaaca ttgagcgtgg
    21241 aatattgagc aattccagca ttttatcgtc ccattgtttg gtgtgaatgt taaacaacat
    21301 agtacgagaa gcgttggtgt aatcggtaac gtgtacccgc ccttgggtta atttccacac
    21361 cagccaagta tcgaccgtac cgaacagcaa ttcgccacgt tctgcttttt ctcttgcccc
    21421 ttctacgtta tctaaaatcc acttcacttt agtgccggag aagtacggat cgactaccaa
    21481 gcctgtcgtt ttacgaatat attcctcgtg tccgtctgct tttaatttat cggtaatatc
    21541 cgatgtgcga cgacattgcc acacaatcgc attataaaca ggtttaccgg tctctttttc
    21601 ccacacaatc gtggtttcac gttggtttgt gatcccgatt gcggcaatgc tatccggctt
    21661 aataccggct tttgccacca cttcatttaa ggtggaactt tggcttgacc aaatttccat
    21721 cgggttatgt tctacccagc ctgcttgcgg ataaatctgg gtaaattcac gctgagccac
    21781 ttcaaccaca ttggcatttt tatctaataa aaccgcacga gagctggttg taccttggtc
    21841 gagagcgatg atatattgtt tttccataga ttactcctga gtatttgctg gaagattgtt
    21901 atgaatgagg tttttataac cccaagcacc gaataatgca ccgcagattg gggcgacaat
    21961 cggaatgatg aaatacggaa tttcttttcc gcctgttaaa gcaatttcac cccaaccggc
    22021 aagataagca aagagtttcg gaccaaaatc acgagccggg ttcatcgcaa agccggttaa
    22081 cgggccggtt gctccaccaa ttaccgcaat caataaaccg atgagtaatg cggctaaggc
    22141 tttattcggc aagccgtttt tatcatcgcc aatcgctaaa atagtggaca tcaacaccac
    22201 agtaatcaca aattcaacga tgaaggcggt aaccaatgta atattagggt ttggataggt
    22261 ggagaacaca ccggcaaagc caacagtttc gccccgagta atgccttgag cggcttcggc
    22321 ggcagtaaag agatcgctat acataaaata aatcagtgcg acagagcaaa acgctccggc
    22381 aacttgggcg atgacatagg gcaaaatttt atgcttttca aagccgtaga atgcggcaag
    22441 tgctatagtg accgcagggt taaggtgagc accggaaata ccggcagaaa tgtagattgc
    22501 catggaaaca ccaagccccc aaacgatgga aatttcccat aaaccgaaat tcgcaccggc
    22561 tacctgagca gcagcaacac aaccagcacc aaagaaaaga ataaaacctg taccgataaa
    22621 ttcgccaata caggcattac gtaaggattt gctcataaag tttctcctta agatgaaaat
    22681 gattggaaag tgatgaaaaa atgtttgaat atgaacatat ttcggagtga tattgccaaa
    22741 gcggcatttt ttaagcaaat aggaagtttc aaatttgtga aatccatcac attatttttc
    22801 taaatcactc atttttaggt atgatgtgag aaaacgttag atgaggaaaa atgatgtctt
    22861 caatacttat gatttcaatc ggggcggtac ttggagctat gtgccgctgg caattagccg
    22921 tttggctaaa cccgatactc agccaattcg cctttggtac tttagcagca aattggcttg
    22981 gttgtttgtt aattggtatt gcaatggggt ttaatttagg cgagagccag cggttgctgt
    23041 tcatcagcgg ttttttaggc agttttacca ccttttccag tttctcttta gaactaacgg
    23101 aaaaactatt agcagaaaaa tgggggcagt ttgtgacagt gctgagttta catttaatcg
    23161 gtgggctttt gcttactttg ataggtgtaa tgcttgcaag agccgttaca agcggtcgtt
    23221 tttgctgaaa attttgcaaa taaaaaacct cccaaacggg aggttttgcg agcgattaaa
    23281 gtaggatatt ggaaagtaat aaaccaaatc cgatactgaa aatcatacta agtaagcccg
    23341 gtaacataaa gctatggttg aaaatatatt taccgatacg ggttgtgccg gtggtgtcga
    23401 agtcaatcga ggcaataatc gggccgtagt tcggaatgaa gaagtagccg tttaccgcca
    23461 caaatacccc gattagcacc ggtgcaggaa tgccgatagc aatcgctaca gggaataagg
    23521 ttgcaaccgt tgccccttgg ctgtttacca atacggaaag tacgaataat gcgaaagcaa
    23581 atgcccaagg tgcggtttca actaagcctg aaaccattga tttcacttcg tccatatgac
    23641 cttgcattaa ggtatcgcct aaccaagcaa taccgaaaat cgcaatcact gcacgcatac
    23701 cggcgtggaa gacagaacct ttggtgattt cattaccgtc cggtttgcag aagaagataa
    23761 tcaacgcacc aatacttaac atcacaattt caatcgtgtg agccatcccc atcggcttac
    23821 catcaaacac agggcgaaga gctggaattg cgcccattaa taccactaat aatgcaccga
    23881 ataggaataa gcctactgat aatttcgcag tcggttttaa cggtaattcg gttggattgg
    23941 tagtaatgtg attttctttc acatattcag ggtcttgcaa taagcgttga taatttgggt
    24001 cgtcttttaa ttctttgccc attttattta caaacacaca agctaaacct aagcccaata
    24061 aggtcgcagg aatagtcaca cttaacacgt tacccaatgt aacaccttga ggttcaagga
    24121 aggcaaccac agcaactact gccgcagcaa tcgggctggc gacaatcgca aattgtgagg
    24181 cgattactgc cattgaaagt ggacgctcag ggcggatacc gttgtggcgg cttacctctg
    24241 caattacagg taatacagaa taagcaacgt gacctgtacc ggcaagcacg gtgaatgtcc
    24301 aagttacaag cggtgcgata aaggtaatgt atttcgggtt tttacgcaaa atgcgagtgg
    24361 caattttgat catatagtcc aaaccaccgg ctgcttgcat ggctgctgca gccgacacaa
    24421 ccgccataat cataaacatt acatcaatcg gtaaaccggc aggttttagc ccaaacccaa
    24481 atgaaagaat ggctaagccc aagccaccga acacccctaa tccgataccg cctacacggg
    24541 cgccaaccaa aatgcatagt aacactatgg caaattggat aataaacatc gcagacataa
    24601 ttttttgctc ctaaataagt aaatgaaact ctgtgtttga aaaaatctgc atttttcatc
    24661 aaattaatcg gcacgtacta
//
LOCUS       DANMBQ010000020        23758 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.020, whole genome shotgun sequence.
ACCESSION   DANMBQ010000020 DANMBQ010000000
VERSION     DANMBQ010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23758
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.020"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            35..1348
                     /gene="pilQ"
                     /locus_tag="PXE92_000745"
     CDS             35..1348
                     /gene="pilQ"
                     /locus_tag="PXE92_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HDL5760016.1"
                     /translation="MWRIFIYFLCGFSLAYANTISIVLKNAPTSLIFTYLAEETGKNM
                     VLDDNIETKSTLRLENKSVDEIFKTLGKVNKLSLTQEDDIVYIHKKEEKAADLTPLPI
                     MNLQNNGQNTPLVTAPKLITKTLKLHYAKASEVIESLTKGSGTFLSENGYIHFDERSN
                     SLIVKDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGH
                     YKFGGRLEGNGLNNVTNNLNVNFPITGGASAVLQVSSINSRVLDLELSALEQENSVEI
                     IASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLGLEVVPHLSTQNQIL
                     LDLIVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPI
                     LGSIPFIKRLFSQTRDKISKRELVIFVTPYILQSNEKSSNRKKSK"
     gene            1429..1842
                     /gene="nusB"
                     /locus_tag="PXE92_000746"
     CDS             1429..1842
                     /gene="nusB"
                     /locus_tag="PXE92_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDL5760017.1"
                     /translation="MKISPRRRARECAVQAIYSWYISQNTVEEVELAFVTDQDMKGVD
                     MPYFRKLFRGVVDNVEAIDEALRPYLDRKESDVDPIERSILRLSTYELKFEHDVPFRV
                     VINEGIEVAKVFGSDDSHKYINGILDKLAPALGRK"
     gene            1905..2885
                     /gene="thiL"
                     /locus_tag="PXE92_000747"
     CDS             1905..2885
                     /gene="thiL"
                     /locus_tag="PXE92_000747"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HDL5760018.1"
                     /translation="MGEFDIIERYFNASQRPPRKDVLLSIGDDCALTSLKPNQQLAIT
                     TDTLVCGTHFLPTISPADLAYKSVASNLSDLAAMGAEPAWISLALTLPEINHDWLAEF
                     SEHFFEILDHYNVDLIGGDTTCGPLSLTITAQGIVPQDRGLFRHNAKVGDWIYVSGTL
                     GDSAGGLQLLLNQQSEQVNWNKEQSYLIQRHLRPTPRVLLGLTIASIANAAIDISDGL
                     LSDLSHILKRSDCGAVLNLENFPLSDVLLSCYSRTEAEYFALNGGEDYELCFTVPNDN
                     KAKLDKALANIGVTYTCIGQIRSAKEGLTLLRHNQPVTLPSQRGYDHFKK"
     gene            2890..3363
                     /locus_tag="PXE92_000748"
     CDS             2890..3363
                     /locus_tag="PXE92_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HDL5760019.1"
                     /translation="MKPINLKNPIHFFAFGFGSGLLKPAPGTWGSLAGLIVAIALWSI
                     TQSALFFGLLTLVSFIAGCVICTKASQDLEVHDDGRIVWDEIVAIFLMFTCLPEYNLL
                     GYLLAFISFRIFDILKPFPIRYFDEKLESGLGIMFDDILAAIFALISLHLLYYFI"
     gene            3370..3993
                     /locus_tag="PXE92_000749"
     CDS             3370..3993
                     /locus_tag="PXE92_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HDL5760020.1"
                     /translation="MLTILFIHFAGLISPGPDFFYVVRQSASHSVKSGVLAATGISIG
                     IIFWAAFAIFGLAWLSNSIGSLFQYAIMIIGGCYLVYIGSQMVRVTENIIFVENKAQL
                     TPLNPWQEIKKGLLINIFNAKAGVYFTSVISAYVDNLSNTLQMFELLLLFVVSTFIYF
                     CVVALLFSRRPVRLFYAKYSRYIDNISGVIFILFGSMLIYEGFSHFI"
     gene            4105..4710
                     /gene="ruvA"
                     /locus_tag="PXE92_000750"
     CDS             4105..4710
                     /gene="ruvA"
                     /locus_tag="PXE92_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005686751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDL5760021.1"
                     /translation="MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEE
                     ATIFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAI
                     ENEELAKLTKIPGIGRKTAERLLVELKGKFKGMAQSDFFVEVSHEQIVASNTPDPANE
                     ALDALIALGYKPADAEKMIKKVNKSGATSEQLIREALKNSL"
     gene            4847..5851
                     /gene="ruvB"
                     /locus_tag="PXE92_000751"
     CDS             4847..5851
                     /gene="ruvB"
                     /locus_tag="PXE92_000751"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDL5760022.1"
                     /translation="MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVHDQMEIF
                     IKAAKLREEALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLT
                     NLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
                     TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRG
                     TPRIANRLLRRVRDYADVRNNGIITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERF
                     DGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATSRTYAHLGITQID
                     "
     gene            complement(5950..6633)
                     /gene="artM"
                     /locus_tag="PXE92_000752"
     CDS             complement(5950..6633)
                     /gene="artM"
                     /locus_tag="PXE92_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HDL5760023.1"
                     /translation="MWWDYLVEISQGIGTSLQLTFVALIIAFILAIILTFILSLENRP
                     LKWLVNGFITLFTGTPLLIQFFLIYSGPGQFEWITESAAWVLLSDAWFCAMLALALNS
                     AAYSTLLFHGAVKAIPKGQWETCAALGLSRLDTLKILVPYALKRALPSYSNEIVLVFK
                     GTSLASTITIMDIMGYARQLYGTEYDALSIYGMAGVIYLVITGIMTIVLRKLESRVLA
                     FERFETEKA"
     gene            complement(6633..7304)
                     /gene="artQ"
                     /locus_tag="PXE92_000753"
     CDS             complement(6633..7304)
                     /gene="artQ"
                     /locus_tag="PXE92_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HDL5760024.1"
                     /translation="MSSDILNLLVNATLMTLGIALASLLIGMLLSIFFVVLETSKIAC
                     IRKPTSIIITLLRGLPEILVVFLIYFGLIQVIFLITDEFAELNAFWCGAIALGIIFAA
                     YASQSLRGAIKAIPVGQWESGTALGLSRAQVFVRIILPQVWRHALPGLSNQWLVLLKD
                     TALVSLIGVDDLMRQSELINANTHQPFTWYGIAALIYLAITLISQRVIKVLEGRFTRF
                     ERGVA"
     gene            complement(7304..8029)
                     /locus_tag="PXE92_000754"
     CDS             complement(7304..8029)
                     /locus_tag="PXE92_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDL5760025.1"
                     /translation="MKKLLLASAIAFATLSANAQETITFAMEPSYAPFETTNEKGEVI
                     GFDVDIAKALCEELKATCEFKTQSFDSLIAGLKFKNFDAIISGMDITEARQKQVAFTN
                     AYLENSVSYVAMKGKFTPETAKNVGVQNGTTFQQYLSKNAKQYNLKPYASLQSAVLDL
                     KNGRVDMVFGDTPVLAEWLKTEKELDFVGEKVVDKAFFGNGYGIAVNKSNTALLEKLN
                     SALATIKTNGKYEQIYNTWMAGK"
     gene            complement(8055..8789)
                     /gene="artP"
                     /locus_tag="PXE92_000755"
     CDS             complement(8055..8789)
                     /gene="artP"
                     /locus_tag="PXE92_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HDL5760026.1"
                     /translation="MAIRIQNVNFFYGSNQALFDINLEIEKGDTVVLLGPSGAGKSTL
                     IRTLNLMEVPQSGTLAIANHQFDLTAKTDSKAVSLLRREVGMVFQQYHLWPHLTVMQN
                     LIEAPMKVLGLSKEEAVARAKGHLARLRLSEFAERFPLHLSGGQQQRVAIARALMMQP
                     QVLLFDEPTAALDPEITAQVVDIIKELQSTGITQVIVTHEVGVARKVASKVVYMEKGT
                     IIEQGDASCFESPKTEQFAQYLSHSE"
     gene            8997..10760
                     /locus_tag="PXE92_000756"
     CDS             8997..10760
                     /locus_tag="PXE92_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HDL5760027.1"
                     /translation="MIRYFFSLVLSLLMINSSHANLFSQPKFLKSEEAFVFSIQNENE
                     TLQLNWDIADNYYLYKKEIRVTPQNIEIGDITFPAAEQYNDEFFGQVEIYRNHLGLKV
                     PFKEIKDNASIVVEYQGCTKGFCYPPERVELKLDSILSATPEELAQLEAQAVEKSENF
                     AKTDNMAPPENVAKAEQDQLAENLANNRFSIFWFFVLGVGLAFTPCVLPMLPLLSAIV
                     IGNKQRPSTAKALLLSIAYVQGMAVTYTLLGLIVAAIGLPFQIALQSPPVLIGLSIVF
                     ILLACSMFGLYEIQLPNSWQQKLNAMSQKQQGGALGSVFLMGMIAGLIASPCTSAPLS
                     GALLYVAQSGDLVTGGLALYLLALGMGLPLILITLFGNKILPKSGEWLLKVKAAFGFV
                     MLALPVFLLSRVLPSHYEPFLWSALAVAFLIWLVDAIPSNSITKKIIKVLLLLALAIA
                     AKPWADLAWNGSTTQQQTTPHLALEKIQSLADLETKLTASKGKKVMLDLYADWCVACK
                     EFEKYTFSDQNVQNKLNEMVVLQIDMTKNSAENIELMKHFNVLGLPTILFFDENGNEM
                     SQSRVTGFLDAEQFLAWLNKL"
     gene            10770..11339
                     /locus_tag="PXE92_000757"
     CDS             10770..11339
                     /locus_tag="PXE92_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HDL5760028.1"
                     /translation="MNQENHKIEDIIRIFNQCFSDEYNTRLERGGNYPIYLPEFMDED
                     GVPSERPYNVILFAHGYYSSALHEIAHWLVAGEARRKLEDFGYWYEPDGRSAERQREF
                     ESAEIKPQAIEWVLATAAGFRYFASADNLSGNPGDNSAFKQAVYDQVKLYAERGYLPK
                     RAETLRKALCAFYGTPDVIDLAQFDIERI"
     gene            11565..13343
                     /locus_tag="PXE92_000758"
     CDS             11565..13343
                     /locus_tag="PXE92_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HDL5760029.1"
                     /translation="MSTLDFHFIHRFHQQVQALSHHPALRFMQDEKWSEISWLELQKQ
                     VNNLSYALLANGLAVQEKIAIFAQNMPRWTITDIAAMQIRAVAVPIYATSTTKQLEYI
                     LNDGDIKILFVGDQEQYDQAIEIANNCSLLIKIVAMKDSIDLRDFPIAQHWQDFIKVN
                     QDEAELTKRLNDKCLEDLFTLIYTSGTTGEPKGVMLDYANLAHQLQAHNKALPHIDEN
                     DISLSFLPLSHIFERAWVTYVLYRGAVNCYLEDPQQVRQALSTVRPTLMCAVPRFYEK
                     IYTAVWDKVQQAPIHRRALFKWAIRTAEDNLFGKKSAFFHRLQYIMADKLVLGKLRAL
                     LGGRIRMMPCGGAKLDPSIGLFFQSIGINVKLGYGMTETTATISCWQEKGFNINSTGT
                     LMPDVEVKISEENEILVRGGLVMKGYYKKPEATAQAFTAEGFLKTGDAGELDSEGNLY
                     ITDRIKELMKTSNGKYIAPQYIEGKIGKDKFIEQIAVIADAKKYVSALIVPCFDSLEE
                     YAKKLNIRYQDRLELIKHYEVVRMFEQRINELQKDLASFEQIKKFTLLSQAFSTKMEE
                     ITPTLKLRRKVILERYKQQIEKMYES"
     gene            complement(13376..13720)
                     /locus_tag="PXE92_000759"
     CDS             complement(13376..13720)
                     /locus_tag="PXE92_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL5760030.1"
                     /translation="MIQRFEVGSRFSEMAIHNGVAYLAGQVPLDDTADAYTQTQQVLA
                     EIDKWLAKANSDKSKILMATVYLKEMADYAEMNRAWDEWVAPNNAPPRAAVEAKLANP
                     NWKVEIVVTAAV"
     gene            complement(13729..14277)
                     /locus_tag="PXE92_000760"
     CDS             complement(13729..14277)
                     /locus_tag="PXE92_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HDL5760031.1"
                     /translation="MAKLFANSTACLYLENMKKLIFLGLSALALAGCSSTISNPNQLI
                     GQWQCTIEYDDFNIRTVDNLRFSTNGTMTNQGGIYYPIQKSIFEYSLQQNGRWSVKNG
                     AIVYRIVSESVQRSHRSQIWSELQRDAELQQFEENLFSSLSDSDNNKTVELIITDFDE
                     KEMDIKQEIKGHKAYKGQCIKQ"
     gene            complement(14304..15341)
                     /locus_tag="PXE92_000761"
     CDS             complement(14304..15341)
                     /locus_tag="PXE92_000761"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HDL5760032.1"
                     /translation="MALKELDWANLGFSYIKTDYRFIAHWKDGKWNEGELTQDNTLHI
                     HEGSTALHYGQQCFEGLKAYRCKDGSINLFRPDQNAERMQRTADRLLMPRVPTELFIR
                     ACKKVVKANQDWLGPYGSGATLYLRPFLIGVGENIGVKAAPEFIFSVFCCPVGAYFKG
                     GLAPSNFITTDYDRAAPMGTGGVKVGGNYAASLLPHELAVEQSSTTRKFADAIYLDPK
                     THTKIEEVGAANFFGITKDNKFITPISESILPSITKYSLLHLAQERLGMEAIEGDVYI
                     DQLDQFAEAGACGTAAVITPVGGIQHKDKFHVFYSETEVGPVTRRLYAELTGIQFGDV
                     EAPQGWIVKVE"
     gene            complement(15483..15809)
                     /gene="grxD"
                     /locus_tag="PXE92_000762"
     CDS             complement(15483..15809)
                     /gene="grxD"
                     /locus_tag="PXE92_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005705415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HDL5760033.1"
                     /translation="METIDKIKQQISENPILLYMKGSPKFPSCGFSARAVEAVINCQV
                     PFGYVDILTNPDIRAELPKFANWPTFPQLWVEGELVGGCDIVLEMLQKGELQTLLKET
                     AAKHAA"
     gene            complement(15881..16486)
                     /gene="recR"
                     /locus_tag="PXE92_000763"
     CDS             complement(15881..16486)
                     /gene="recR"
                     /locus_tag="PXE92_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDL5760034.1"
                     /translation="MQTSPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGVALS
                     KALNEAMSHIGHCKSCRTFTEEEECTICKNPRRQMSGQLCVVEMPEDIQAIEQTGQFS
                     GRYFVLMGHLSPIDGIGPREIGLDLLQQRLEQESFHEVILATNPTIEGDATANYIAEM
                     CRMYNVKATRIAHGVPVGGSLEMVDGTTLSHSFAGRRDIDI"
     gene            complement(16494..16823)
                     /locus_tag="PXE92_000764"
     CDS             complement(16494..16823)
                     /locus_tag="PXE92_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDL5760035.1"
                     /translation="MFGKGGLGGLMKQAQQMQERMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRIEIDPSLMEDDKEMVEDLVAAAFNDAVRRAEEMQKEKMASVTAGMQLP
                     PGMKFPF"
     gene            16963..18048
                     /gene="recF"
                     /locus_tag="PXE92_000765"
     CDS             16963..18048
                     /gene="recF"
                     /locus_tag="PXE92_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HDL5760036.1"
                     /translation="MALTRLLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIF
                     YLGHGRSFKSHISNRIIHYDKDDFVLHGKIDEAKHSWSVGIQKFRSGETTLKINGEDG
                     NKIADLAHLLPMQVITPEGLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQ
                     RNSALQQVRSYQELKAWDIELVKTTYAVSEMRAEYAEALRPEIEKTCQFFLPEIEIGL
                     SFHQGWEKGADYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVLSRGQLKL
                     LMCALRLAQGEHLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQ
                     DQLNQMQWQDRSDDCLFTVKNGEIQPQ"
     gene            complement(18239..19360)
                     /gene="tyrA"
                     /locus_tag="PXE92_000766"
     CDS             complement(18239..19360)
                     /gene="tyrA"
                     /locus_tag="PXE92_000766"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HDL5760037.1"
                     /translation="MNPLAPLREQIDQVDQQLIALLSERLALVAEVGKVKSEHGIPVY
                     APERETAMISARRSEAEKQGIPADLIEDVLRRIMRESYANENKHGFKRVNSDIQKIVI
                     VGGKGKLGGLFGNYLTLSGYNVEALGRDDWDNAEQILANADVVIVCVPIANTLATIER
                     LQSYLTENMILADLTSVKHQPLQKMLEVHNGAVVGLHPMFGPDIASQAKQVVACCHGR
                     FPERYQWLLEQIKIWGAKIEEIEAAAHDNAMTYIQALRHFSTFAFGLHLSRQPVQLSQ
                     LLALSSPIYRLELAMIGRLFAQDGSLYADIIADKPENLATIETLKESFEQGLDFFKRN
                     DKAGFIKAFEEVHHWFGDYSEQFLKESRVLLQQAHDSRK"
     gene            complement(19415..20473)
                     /locus_tag="PXE92_000767"
     CDS             complement(19415..20473)
                     /locus_tag="PXE92_000767"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HDL5760038.1"
                     /translation="MNTVFNQDSVHNVNIQDEKVLLTPQELKQEFPLPEHLRNQIERS
                     RKTISDIIHRRDKRQLIVIGPCSIHDPVAALEYGKKLKALSEQVSDKLYIVMRVYFEK
                     PRTTVGWKGLINDPKMDGSFDVETGLRIARKLCLDLAELGLPLATEALDPMTPQYLAD
                     LFSWSAIGARTTESQTHRELASGLSMAVGFKNGTDGDLAVALNAMQSSAQSHSFIGIN
                     QQGQVTLLKTKGNADGHIILRGGKTPNYEKQYVDDCEWVLKQANLPTAIMIDCSHGNS
                     NKDYRRQPLVAENVLEQLLAGNTSIIGLMIESNLHAGNQSSELPFEQMKYGVSITDAC
                     IDWQTTEELLTHFAEKLR"
     gene            complement(20513..21550)
                     /locus_tag="PXE92_000768"
     CDS             complement(20513..21550)
                     /locus_tag="PXE92_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5760039.1"
                     /translation="MHNKLLSICILRLSAIGDVCHTLAVIQAIQRKYPSAEITWIIGK
                     TEAYLMKDIPNVHLIPYDKKIGWKGIFTLWQKLSHKRFDFLLNLQTAFRASILSLGIK
                     AKKKIGFNQDRAREMQWLFTNQKVEMTDSPHVLDGQMMFAKAIGIMDLSAQWNLPVSD
                     EDLAYGKQFIDFTRKNILIAPCSSKKEKDWLPERYAEIANWLSKQNINVLIAGSPSQY
                     EMETAAKIQQLAPNCTSIAGKTTLKQLAGVIRQVDLVISSDSGPAHIATTQNTPVIGL
                     YAIHNPRRTGPYNDLDKVVSVYDEAILQSYGKPWQQLAWATKAKGKNWMEKITVESVK
                     QKVVETLKITL"
     gene            complement(21646..23085)
                     /gene="pyk"
                     /locus_tag="PXE92_000769"
     CDS             complement(21646..23085)
                     /gene="pyk"
                     /locus_tag="PXE92_000769"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL5760040.1"
                     /translation="MSRKLRRTKIVCTMGPATDRGNTLEKIIAAGANMVRMNFSHGIP
                     EDHIERANKVREIAARLGRHVAILGDLQGPKIRVSTFKDGKIFLNIGDKFTLDADLPR
                     GEGHQEAVGLDYKNLPNDVVPGDILLLDDGNVQLKVLEVEGVKVHTEVTVGGPLSNNK
                     GINKLGGGLSAPALTDKDKEDIKLAAKIGVDYLAVSFPQSSADLHYARELAKEAGLEA
                     KIVAKVERAETVATEEAMDDIILGADVVMVARGDLGVEIGDAALVGVQKRLIRRARKL
                     NRVVITATQMMESMIKKPMPTRAEVMDVANAVLDGTDAVMLSGETANGDYPVETVKSM
                     AEVCLGAETMPSINISRHRMEGTFKSIEEAVAMSAMYTANHLEGVSAIISLTHSGETA
                     KLTSRISSGLPIYAMSRNQKALNLCALYRGVTPVYYNEDSRTMEGAKKAIAQLKEQGY
                     LLTGELVLLTHGDELKAGGTNTCRILRVE"
     gene            23212..23700
                     /gene="sixA"
                     /locus_tag="PXE92_000770"
     CDS             23212..23700
                     /gene="sixA"
                     /locus_tag="PXE92_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HDL5760041.1"
                     /translation="MNIWIMRHGEAGFNASSDAARCLTDNGIKNTISQGKWLGEHLAN
                     QQIQLDKILVSPYLRAQQTLENVLIGMQAVNFPQHFTNLIESWDEVTPDGNPHTVESY
                     LHFLREEGAKNILLISHLPLVFDLVQILTNNQSNVQFPTSTIAEINWVKTKAELIRVK
                     HT"
BASE COUNT         6996 a         5094 c         4571 g         7097 t
ORIGIN      
        1 cttatgaaat taacatcaaa ttatagaggt tgatatgtgg cgaattttta tatatttctt
       61 atgcggtttt tcattagcct atgcgaatac catttccata gttttaaaaa atgctccaac
      121 ttcgcttatt tttacttatt tagcggaaga aaccggtaaa aatatggtgc ttgatgataa
      181 tattgaaacc aaatcaacac tacgattaga aaataaatcg gttgacgaga tttttaaaac
      241 gcttggcaaa gtcaataaat tatccttaac gcaagaagat gatattgttt atattcacaa
      301 aaaagaggaa aaagcggctg acttaacgcc tctgccaata atgaatttgc aaaataatgg
      361 gcaaaataca ccgcttgtca ccgcccctaa gttaatcaca aaaaccttga aactacatta
      421 tgcaaaggct tcagaggtga ttgagtcgtt aaccaaaggc agcggaacgt ttttatcgga
      481 aaacggttat attcactttg atgaaagaag caatagcctg attgtgaaag acagtgcaaa
      541 atcgcttaaa aatatcgaga atttagtaaa acagctcgac caacccaccg agcaaattgc
      601 gattgaggct agaattgtca ctatcagtag cgagcatttg caagagcttg gcgttcgctg
      661 gggaattttt tctcgtgggg ctgggcacta taaatttggc ggacggctgg aaggcaatgg
      721 actcaacaat gtcaccaata acttaaatgt aaattttccg attactggtg gagcatctgc
      781 cgtattacag gtttcgtcca ttaatagcag agtgcttgat ttagaattaa gtgcattaga
      841 acaagaaaat agtgtggaaa ttattgccag cccacgcctg ttaaccacca ataaaaagcc
      901 ggcaagtatc aagcaaggca cggaaattcc ttatgtgatg tacaacacca aatcggaagc
      961 caccgatgtc gaatttaaag aagcggtatt agggcttgaa gtcgttccac acctttcaac
     1021 ccaaaatcaa attctactcg atctgatcgt tacccaaaat tcgccaaatt cccaatccgg
     1081 cagtagtggc ttaattacga ttgataaaca agagctaaat acgcaagtat ttgccaaaca
     1141 cggcgaaacc attgtacttg gtggtatttt tcaacattta acccaaaaag gcgaagataa
     1201 agtgccgatt ttaggctcaa ttcccttcat caagcggtta tttagtcaaa ctcgagataa
     1261 aatcagcaaa agagagctag tcatttttgt gacgccttat atccttcaat ctaatgaaaa
     1321 gagcagcaac cgcaaaaaat caaaatagca catcataaac gcaagcaaaa ataggggaag
     1381 tgtgatagaa tcagccgtca ttttttgagt taaagattta gaggttttat gaaaatttcc
     1441 ccacgtcgcc gtgcaagaga atgtgcggtg caagccattt attcttggta tatttcccaa
     1501 aacacggttg aagaagtgga attggcgttt gtgaccgatc aagatatgaa aggcgttgat
     1561 atgccttatt tccgtaaact tttccgtggc gttgtggata atgtagaagc cattgatgaa
     1621 gcattacgcc cttatttaga tcgtaaagag tcagatgttg atcctattga acgttctatt
     1681 ttgcgtttat caacttacga attaaaattt gaacacgatg tgcctttccg tgtagtcatc
     1741 aatgaaggga ttgaagtcgc taaagtgttc ggctctgatg acagccacaa atacattaac
     1801 ggcattttag ataaattagc cccagcatta ggcagaaaat aataagattc cccaatttat
     1861 acataaattg gggattttga ttataacgct caaggagatt ttttatgggt gaatttgata
     1921 ttatcgaacg ctattttaat gcttctcaac gcccacctcg caaagatgtt ttactttcta
     1981 tcggcgatga ctgtgcgctc acatcactca aaccaaatca gcaacttgcg atcacaaccg
     2041 atacccttgt ttgcggcact cattttctac cgactatttc acctgccgat ctcgcttata
     2101 aaagtgtggc gtccaattta agcgatcttg ccgcaatggg tgcagaacct gcatggatct
     2161 ctttagcctt aaccttacct gaaattaatc acgattggct agctgaattt agtgaacatt
     2221 tctttgagat tcttgatcac tataatgttg atttgattgg aggggatact acttgtggac
     2281 cactatcttt gacaatcaca gctcaaggga ttgtgccaca agatagaggc ttattccgcc
     2341 ataatgctaa agtaggcgat tggatctatg tttccggcac actcggtgac agtgcaggtg
     2401 gtttgcaact tctgctaaat cagcaaagcg agcaagtgaa ttggaataaa gagcaaagct
     2461 acctgattca acgccattta cgcccaacac ctcgagtttt acttggcttg actatcgcct
     2521 ctattgctaa tgcagcgatt gatatttcag atggtctatt gtctgattta agccatattt
     2581 taaagcgcag tgactgtggt gcagtattaa accttgagaa tttccccttg tctgacgtct
     2641 tacttagttg ttattctcga acagaggcag aatattttgc cttaaacggt ggcgaagatt
     2701 acgaactctg ctttaccgtg ccaaatgaca acaaagccaa attagacaaa gcattagcca
     2761 atatcggagt aacttataca tgtattgggc aaattcgttc ggctaaagaa ggtttaaccc
     2821 tattacgtca taatcagcct gtcaccttgc cctcacaacg aggctacgat cattttaaaa
     2881 aataacgcaa tgaaaccaat taatcttaaa aatccgattc atttttttgc ctttggcttt
     2941 ggttcaggct tattaaagcc tgctcccggc acctggggta gcctcgccgg gctaattgta
     3001 gcaatagcct tgtggtctat cacacaatcc gccctgtttt tcggcttact caccctagtt
     3061 tcttttattg ccggttgtgt tatttgcacc aaagccagcc aagatctaga agtacacgat
     3121 gacgggcgaa ttgtttggga cgaaatagtt gccatctttt tgatgttcac ctgtttgcct
     3181 gaatacaatc ttcttggcta cctgctcgcc tttatcagct ttcgcatttt tgatattttg
     3241 aagccttttc caatccgcta ttttgatgaa aaattagaaa gcggtttagg cattatgttt
     3301 gatgatattc tcgcagccat ttttgccctg atttcacttc atcttttata ttatttcatt
     3361 taaaaattta tgctcactat tttatttatt cattttgccg ggcttatcag ccccggcccc
     3421 gatttcttct atgtcgtcag acaatccgcc agccactcag ttaaaagtgg ggtacttgcc
     3481 gcaaccggaa tctcaatcgg cattattttt tgggcagcct ttgcgatttt tggtttagcg
     3541 tggctcagta atagtattgg ctcgctgttt caatatgcca ttatgattat cggtggctgt
     3601 tacctggttt atattggctc tcaaatggta cgggtaaccg aaaatatcat ttttgttgaa
     3661 aataaagctc aactcacgcc gctaaaccct tggcaggaaa ttaaaaaagg cttattaatc
     3721 aatatcttta atgccaaagc tggcgtttac tttaccagcg tcatttcagc ctatgtagat
     3781 aatttaagca ataccctaca aatgttcgaa ctacttctac tctttgtggt aagtaccttt
     3841 atttatttct gtgtggtggc actactcttt tctcgccgac cggtcagact gttctatgcc
     3901 aaatatagtc gctatattga caatatctca ggcgtaattt tcatcttatt cggctcgatg
     3961 ctgatttatg aaggattcag ccactttatc taatcacaag cggtctgatt tcactaaaaa
     4021 tttgcaaatt ccgctatcaa taaatagtgt tattttatac agtttctgct atgctactgc
     4081 caattttaac tctgagagaa caaaatgatt ggacgattac acggcaaaat tattgaaaag
     4141 caaccgcctg aaattttatt agacgtgcaa ggggtaggct atgaactact gctcccgatg
     4201 accagtttct acagcctgcc acaaattggc gaagaggcga ctattttcac ccatttagtg
     4261 gtgcgagaag atgctcactt gctattcggc tttgcccaaa aacaagatag aactctattc
     4321 cgtgaattaa ttaaaaccaa cggtgtcggg ccgaagctcg cgttggcaat tctatcagca
     4381 atgtcggtgt cgcaatttgc caccgcgatt gaaaatgaag agctggcaaa attaaccaaa
     4441 attccgggaa tcggtcggaa aaccgcagaa cgcttattgg tggaactcaa aggcaaattt
     4501 aaaggaatgg cacagagtga tttctttgtg gaagtatcgc acgagcaaat tgtggcaagt
     4561 aatacgccag acccggcaaa tgaagccctt gatgccttaa tagccctagg ctacaaacct
     4621 gccgatgcgg aaaaaatgat taagaaagtg aataaatccg gtgcaacgag cgaacagctt
     4681 attcgtgagg cgttaaaaaa ttcattatga tattgatagt atagggcgaa agatatttcg
     4741 cccctacaat ctcattttta aaaatatatg tgtaggggca aatcaatatt tgccctcatg
     4801 agtaatatag ggtaatacca ttccactaca acaataatct aaatgtatga ttgaagcaga
     4861 tagaatcatc agtgcctcgc ctaagcgtga ggaagaagtt atagaccgag caatccgccc
     4921 gaaactgctt gccgactatg tcgggcagcc ttctgtgcat gatcaaatgg agatcttcat
     4981 caaagccgct aaattgcggg aagaggcatt agatcacttg ctcattttcg gcccgcccgg
     5041 tttgggaaaa actacccttg ccaacattgt ggcaaacgaa atgggggtga atattcgcac
     5101 aacttcaggg ccggtgctgg aaaaagcagg cgatttggca gcaatgctga ccaaccttga
     5161 accttacgat gtgctgttta ttgatgagat tcaccgcctt tctccagcga ttgaagaagt
     5221 gctttatcct gcaatggaag attaccagct cgatattatg attggggaag gacctgctgc
     5281 tcgttccatc aagctcgatc taccgccttt tacccttgta ggggcaacca cccgtgccgg
     5341 ctcactgacc tcaccgttac gagatcgttt tgggattgta caacgcttag aattttactc
     5401 agtggacgat cttactctga ttgtcaaacg cagcgccgat tgcttaaatc tcaatttgtc
     5461 ggcagacggt gcttatgaag tggctcgccg ctcccgtggc acaccccgta ttgccaaccg
     5521 cttactccgc cgagttcggg attacgccga tgtgcgtaat aatggcatta ttacctcaga
     5581 cattgccaaa caagctctgg caatgctcga tgtggattcg gaaggctttg attttatgga
     5641 cattaaactg ttgcaagcga ttgtagaacg ctttgatggc gggccagttg gattagacaa
     5701 tcttgcggca gctatcggcg aagaacgaga tacgattgaa gatgtgctag agccttatct
     5761 gattcagcaa ggctttctac aacgcacacc aagaggcaga attgctacca gcagaaccta
     5821 tgcccattta ggtataaccc aaatagatta gtcatatttc taaaggcatt gatacataaa
     5881 taaaaagcgg atagttagta ctatccgctt tcatttgcaa aaaatcaata aaatttgacc
     5941 gcttatccgc taggcttttt cagtctcaaa acgctcaaaa gctaatactc tgctttctaa
     6001 ttttctgaga acgattgtca taatgccggt aattaccaag taaataaccc ctgccatacc
     6061 ataaattgat aatgcgtcat actctgtacc ataaagctgg cgagcatagc ccataatatc
     6121 cataatcgta atggttgaag caagcgatgt gcctttaaaa actagcacaa tctcattact
     6181 ataagaaggt aaagcacgtt ttaatgcgta aggcactaaa attttcagtg tatctaaacg
     6241 gctcaaacca agggctgcgc aagtttccca ttgccccttc ggaatcgctt ttaccgcacc
     6301 gtggaacaac aatgtcgaat aggcagcact gtttaacgct aaagccaaca ttgcacagaa
     6361 ccaagcgtcg gataataata cccaagccgc actttctgta atccattcaa attgccccgg
     6421 gccactataa atcaagaaaa attgaattaa taaaggcgtt ccggtaaaaa gcgtaataaa
     6481 tccgtttacc aaccacttta acggacgatt ttctaacgag agaataaacg taagaatgat
     6541 cgctaaaata aaggcaatga tgagcgccac aaaagtgagc tgtaggctgg tgccaatacc
     6601 ctgtgaaatt tcaactaaat aatcccacca cattaagcaa ctcctcgctc aaaacgggta
     6661 aatctacctt ctaatacttt aatcactcgc tggctaatta gagtaatcgc taaataaata
     6721 agtgctgcta tcccatacca agtaaaaggt tgatgagtat tagcattaat taactccgat
     6781 tgacgcatta aatcatctac cccaattaac gataccaatg ccgtatcttt taacagcact
     6841 aaccactgat tgcttaagcc tggtaaagcg tgtcgccaga cttgagggag aataatgcga
     6901 acaaatactt gcgctcggct taaccctaac gccgtaccag attcccactg cccaactgga
     6961 atagctttaa ttgcaccacg taaagattgg gaagcataag cagcaaaaat aatacccagc
     7021 gcaatagccc cacaccagaa agcatttaac tccgcaaact catcggtgat caagaaaata
     7081 acttggataa gaccaaaata gatcaaaaat accactaaaa tctccggcaa cccacgcaat
     7141 aatgtaatta ttatactagt tggtttacgg atacatgcaa tcttactggt ttcaagtacc
     7201 acaaaaaaga ttgacaataa cattccaatc aagaggcttg ccagcgcaat ccctaaggtc
     7261 atcagggttg cgttgacaag taagtttaaa atatcgctag acattatttc ccagccatcc
     7321 aagtattata aatttgctca tatttaccat ttgttttgat ggtagctaaa gccgaattta
     7381 atttttcaag caatgcagtg ttagatttat ttaccgcaat accatatcca ttaccaaaaa
     7441 aggctttatc gactactttt tcacccacga aatctaactc tttttcggtt tttagccact
     7501 ctgccaatac tggtgtatca ccaaatacca tatcaacacg tccatttttt aaatctaaca
     7561 ctgctgattg taggctagcg taaggtttta aattatattg tttggcattt ttgcttaagt
     7621 attgttgaaa agttgtacca ttttgcacgc cgacattctt agctgtttcc ggtgtaaatt
     7681 tccccttcat tgcgacataa cttactgagt tttctaaata agcattggta aaggcaacct
     7741 gtttttgacg cgcttcagta atatccatgc ctgaaataat tgcatcaaaa tttttaaatt
     7801 ttaatcccgc aattaagcta tcgaatgatt gcgttttaaa ttcgcaagtt gcttttagtt
     7861 cttcacataa tgcttttgca atatctacat caaagccaat aacttcacct ttttcatttg
     7921 ttgtttcaaa aggggcgtaa gaaggctcca tcgcaaaagt gatagtttct tgtgcattgg
     7981 cagaaagcgt tgcaaatgcg atagcggaag ctaataataa ttttttcatt gttgtgtcct
     8041 tttgttgtta tagattactc tgagtgagat aaatattgag caaattgctc tgttttcggt
     8101 gattcaaaac aacttgcatc accttgttca ataattgtac ctttttccat gtacaccact
     8161 ttgcttgcca ccttacgagc aacgcctact tcgtgagtca caatcacctg agtaatgcct
     8221 gtagattgca attctttaat aatatcaact acttgtgcag taatttccgg gtcaagtgct
     8281 gcggtaggtt catcaaataa taagacctgt ggctgcatca tcagtgctct ggcaatcgcc
     8341 acccgttgtt gctgaccacc tgaaagatgc agtgggaaac gctcggcaaa ctcgctcaaa
     8401 cgcaaacgtg ccaaatgtcc ttttgctctg gcaaccgctt cttctttgct taacccaagc
     8461 actttcatcg gggcttcaat taagttttgc attacggtta aatgcggcca taaatgatac
     8521 tgctggaaca ccattcccac ctcacggcgt aacaaactca ccgctttgct gtcggtttta
     8581 gcagttaaat caaattgatg atttgcaatc gccaaagtgc ctgattgcgg tacttccatt
     8641 aagtttaagg ttcgaattag ggtactttta cctgccccac tcgggccaag caatacaaca
     8701 gtatcccctt tttcaatctc taagttaatg tcaaataagg cttggtttga gccataaaaa
     8761 aaattgacat tttgaatacg aattgccatt cgttaaaatc ctactacatt taaaataatg
     8821 aatgaatact aattattttt gcataactat gcaatatttt tttcttttag aacaaaattt
     8881 ttgtaataaa atagcactta catcgtctaa catcgttaaa tggcgtaatt tatttggaat
     8941 atgaatactg attacgctat aattttcgcc gagacaatta aaaataggat ttcaatatga
     9001 ttagatactt tttttcactc gtcttgagtt tattgatgat aaactcatct cacgcaaatc
     9061 ttttctctca acccaaattc ctaaaatcgg aagaagcctt tgttttttca atccaaaatg
     9121 aaaatgaaac attacagtta aattgggata ttgcagacaa ttattatctt tataaaaaag
     9181 aaatccgtgt cacgccacag aatattgaga taggcgacat cacttttccc gctgccgagc
     9241 aatataacga tgaatttttc gggcaggtgg aaatctatcg caaccactta gggctaaagg
     9301 taccgtttaa agaaattaaa gacaacgcct caatcgtagt ggaatatcaa gggtgtacca
     9361 aaggcttttg ctatccaccg gaacgggttg agcttaaatt agacagtatt ctctctgcta
     9421 cacctgaaga actggcgcaa ctggaagcac aagcggtcga aaagagcgaa aattttgcaa
     9481 aaaccgacaa tatggcgccc cctgaaaatg tggcaaaagc agagcaagat caactggctg
     9541 aaaatttagc taacaatcgt ttttccattt tttggttttt tgtattaggc gttggattag
     9601 cattcactcc ttgcgtactg ccgatgctac cacttctctc tgcgattgta attggaaata
     9661 agcaacgccc ttctaccgct aaagcattgc tgttaagtat tgcctatgtg caaggaatgg
     9721 cagttactta caccttactt ggcttaattg tagcggctat cggcttgcct ttccaaatcg
     9781 ccttacaaag cccaccggtg ttgattggtt tatctatcgt ctttattctg cttgcctgct
     9841 caatgtttgg cttatacgaa atccagctac caaatagctg gcaacaaaaa ctcaatgcaa
     9901 tgagccaaaa acagcaaggt ggtgcgttgg gtagcgtgtt tttaatgggg atgatcgcag
     9961 gcttaattgc ttccccttgt acttctgccc cactttccgg tgcgttgctt tatgtggcac
    10021 aaagtggcga tttagtcacc ggtggcttag ccctctatct actcgcactg ggaatgggct
    10081 taccgctgat tttgattacc ttattcggca acaaaattct gccaaaatcc ggcgaatggc
    10141 tgttaaaagt gaaagctgca ttcggttttg ttatgcttgc cttaccggtg ttcttattaa
    10201 gccgtgtgct gccaagccac tatgaaccgt ttttatggtc ggcccttgcg gttgcatttt
    10261 tgatctggtt ggtggatgcg attccatcta attcaatcac gaaaaagatc atcaaagtct
    10321 tattattgct cgctttagcc attgccgcta aaccttgggc agatttagct tggaacggct
    10381 caaccactca acagcaaact acaccgcact tagcgttaga aaaaattcaa tcacttgccg
    10441 atttagagac aaaattgacc gcttccaaag gtaaaaaagt gatgctcgat ctctatgccg
    10501 actggtgtgt cgcctgcaaa gagtttgaaa aatacacctt tagtgaccaa aatgttcaga
    10561 acaaactgaa tgaaatggta gtgttgcaaa tcgatatgac gaaaaactcg gctgaaaata
    10621 tcgagctgat gaaacacttt aatgtattag gtttgccaac gattctgttt tttgatgaaa
    10681 acggcaatga aatgagccaa tctcgtgtta ctggcttttt ggatgccgag caatttttag
    10741 cttggctgaa taagttataa agaaaagaaa tgaatcaaga aaatcataaa attgaagaca
    10801 ttattcgcat ttttaatcaa tgcttttctg atgaatataa cactcgccta gagcgggggg
    10861 gtaattatcc gatttacttg cccgaattta tggacgaaga tggtgtgccg agcgaacgcc
    10921 cttacaatgt gattttattt gctcacggct attacagcag tgccttgcac gaaattgccc
    10981 attggctcgt tgctggagaa gctcggcgta aacttgaaga ttttggctat tggtacgagc
    11041 cggacggacg ctctgccgaa cgccaacgtg aatttgaaag tgcggaaatc aaaccgcaag
    11101 cgattgaatg ggtgttagca actgctgccg gttttcgtta ttttgctagt gccgacaatc
    11161 tctcgggcaa tcccggcgat aattcagcct ttaaacaagc agtgtacgac caagtcaagc
    11221 tctatgcaga acgtggctac cttcccaaac gagctgaaac cttgcgtaaa gccctctgtg
    11281 ctttttacgg tacacctgat gtgattgatt tagctcaatt tgatattgaa cgaatttagt
    11341 tgcaaaattt ttaacaaaac agaccgcttg ttgcatatac aagcggtctc atttttgaaa
    11401 aatattgcat ttgtactaaa cgatacccta cttatctatt tctattgcct tgattacttc
    11461 ctatccaaaa ccctttgttt cagagtacaa ctgtttcttt ttttcatatt ttctattata
    11521 ttagcgtaca actgttcact gaaatagaaa gtaaaaataa gattatgagc actttagatt
    11581 ttcactttat ccaccgtttc caccagcaag ttcaggctct tagccaccac ccagctttac
    11641 gttttatgca agatgaaaaa tggtcagaaa taagttggtt agaattacaa aaacaggtca
    11701 ataatctttc ttatgccttg ctggcaaacg gtcttgccgt tcaagagaaa atcgctattt
    11761 ttgcacaaaa tatgcctcgt tggacaatta ccgatattgc tgcaatgcaa attcgtgcgg
    11821 tagcagtgcc gatttatgca accagtacca ccaaacaact tgaatatatc ctgaatgacg
    11881 gggatataaa aatcctcttt gttggcgatc aggaacaata tgatcaagcc atagaaatag
    11941 cgaacaactg ttcgctatta ataaaaattg tcgcgatgaa agactcaata gatctgcgtg
    12001 atttccctat cgctcaacat tggcaagatt tcattaaggt taatcaagat gaagctgaat
    12061 taaccaaacg tttaaatgat aaatgcttag aggatttatt cactttaatt tatacctcgg
    12121 gaacaaccgg tgagcctaaa ggtgttatgt tagattatgc taatttagct catcaacttc
    12181 aggcacataa taaagcactc cctcatattg acgaaaatga tatatccctt tcatttttac
    12241 ctttatcgca tatctttgaa cgtgcttggg tcacttatgt gctatacaga ggggcagtaa
    12301 attgctatct ggaagatcct caacaggtac gtcaagcact ctcaacggta cgacctacat
    12361 taatgtgtgc cgtaccaagg ttctatgaaa aaatctatac tgcggtgtgg gataaagtcc
    12421 aacaagcacc gatacatcgc cgagcgttat ttaaatgggc aatccgtacc gccgaagaca
    12481 atctgtttgg taaaaaatca gcctttttcc accgcttgca gtacattatg gcagataaat
    12541 tggtgctagg aaaattacga gccttactag gcggtcgtat tcgtatgatg ccgtgtggag
    12601 gagctaaatt agatccgtct atcgggctat ttttccaaag tataggcatc aatgtaaaac
    12661 ttggatacgg aatgaccgaa actactgcca ctatttcatg ctggcaggaa aaaggcttta
    12721 atatcaactc aaccggtacc ttaatgcctg atgttgaggt caaaattagt gaagaaaatg
    12781 aaattttagt gcgtggaggc ttggttatga aaggttacta caaaaaaccg gaagccactg
    12841 ctcaagcctt tactgctgaa ggttttctaa aaacgggaga tgccggtgaa ctggattcgg
    12901 aaggcaatct ttatattacc gatcgtatta aagaattaat gaaaacttca aacggtaaat
    12961 atattgcccc acaatacatt gaaggaaaaa taggtaaaga taagtttatt gagcaaattg
    13021 cggtgattgc tgatgccaaa aaatatgttt ctgcgttgat agttccttgc tttgatagcc
    13081 tcgaagagta tgcaaaaaag ctcaatattc gctatcaaga cagattagaa ctcattaaac
    13141 attatgaggt tgtcagaatg tttgaacaac gcattaacga attacaaaaa gaccttgcaa
    13201 gttttgaaca gatcaaaaag tttacactac tttcgcaagc atttagcacc aaaatggaag
    13261 aaattacgcc tacattaaaa ttaagacgaa aggtcattct agaacgctat aagcaacaaa
    13321 tcgaaaaaat gtacgaatca taatgaaaaa cagagatcgt ctttctgctt ttcatttata
    13381 ccgcagcggt aaccacaatt tcgactttcc aatttggatt ggctaattta gcctccaccg
    13441 ccgctcttgg tggagcgtta tttggggcaa cccattcgtc ccacgcacgg ttcatttccg
    13501 cataatctgc catctctttt aaataaaccg tagccattag aattttactt ttatcgctgt
    13561 tggcttttgc cagccattta tcaatttctg caagcacttg ctgggtttgg gtgtaagcat
    13621 cggcggtgtc atctaacggc acttgccctg ccaagtaagc cacaccgtta tgtattgcca
    13681 tttccgaaaa acggctacct acttcaaaac gttgaatcat ttttacctct actgttttat
    13741 acattgccct ttataagctt tatgcccttt tatttcttgc ttgatatcca tttctttttc
    13801 atcaaaatca gtgatgatta gttccactgt tttattatta tcactatcag aaagtgagct
    13861 aaataaattc tcttcaaatt gttgtagctc cgcatcacgt tgtaattcag accatatttg
    13921 tgaacgatgg ctacgctgta cagattctga gacgatacga taaacaatag ccccgttttt
    13981 cacactccag cgcccattct gttgtaatga atactcaaaa atcgactttt gaatagggta
    14041 atatatacca ccttgattgg tcatagtccc atttgtggaa aatcgtaaat tatccaccgt
    14101 acgaatatta aaatcatcgt actcaatagt gcattgccat tgcccaatca gttgattagg
    14161 attagaaatt gttgaggaac aaccagctaa tgcaagtgct gataaaccta aaaaaattaa
    14221 ctttttcata ttctctaaat aaagacaagc ggttgaattt gcaaaaagtt ttgccaattc
    14281 gaccgcttgt tacttgtgta aaattactct acttttacaa tccagccttg cggtgcttca
    14341 acatcgccaa attgaatacc ggttaattct gcgtataaac ggcgggtgac aggccccact
    14401 tcggtttctg aatagaagac gtggaatttg tctttatgtt gaataccacc aaccggcgta
    14461 atcaccgcag ccgtaccaca agcaccggct tcggcaaatt ggtctaactg gtcgatatac
    14521 acatctccct caatcgcttc catacctaaa cgctcttgag caaggtgtag caatgagtat
    14581 ttggtaatac ttggcaaaat cgactctgaa atcggggtga tgaatttgtt gtctttggta
    14641 atcccaaaga agttcgccgc ccccacttct tcaattttgg tatgggtttt cggatctaaa
    14701 taaatcgcat cggcaaattt acgggtagtt gaactttgct caaccgccaa ttcgtgcggt
    14761 aataaactcg cagcgtagtt accgcctact ttcacaccac ctgttcccat tggggctgca
    14821 cggtcatagt cggttgtaat gaagtttgag ggtgctaagc cacctttgaa atatgccccc
    14881 accggacagc agaatacgga aaaaataaat tcaggtgcag ctttcacccc aatattttcg
    14941 cccacgccga ttaaaaacgg acgtaaataa agggttgccc ccgaaccgta aggccctaac
    15001 caatcttgat tggcttttac cactttttta caggcacgaa taaacagctc ggttggcaca
    15061 cgtggcatta ataaacgatc tgcggtgcgt tgcatacgct cggcattttg atccgggcgg
    15121 aataagttaa ttgagccatc tttacagcga taggctttta acccctcaaa acattgttgc
    15181 ccatagtgca gggcagttga gccttcgtga atatgcagtg tattgtcttg agttaattcg
    15241 ccttcattcc attttccgtc tttccaatgt gcaatgaaac ggtaatcggt tttgatataa
    15301 gaaaagccta aatttgccca atctaactct tttaatgcca tgttgtgtcc ttttattttt
    15361 atgttacgaa ataattttga cattctaaaa caaaatagct cttgaggtaa gaagtttaag
    15421 cctaaatcgc aagaaaaaat taaggctctt aaacataaga gccttaacat actggtttga
    15481 aattatgctg cgtgttttgc tgcggtttct tttaataagg tttgaagttc gcctttttgg
    15541 agcatttcta atacgatgtc acaaccgcca actaattcac cttctaccca taattgtggg
    15601 aaagtcggcc agtttgcaaa ttttggcaat tccgcacgaa tatccggatt ggttaaaata
    15661 tccacataac cgaaaggcac ttggcagtta attaccgctt ccaccgcacg agcggagaaa
    15721 ccacaagatg ggaatttcgg tgaacctttc atataaagta gaatcggatt ttcgctgatt
    15781 tgttgtttga ttttgtcaat agtttccatt tttagcctca aaataataat ttaaaatagt
    15841 tgagtaatta tatcagaatt aagttagcac agaaatagct ttaaatatca atatcacgcc
    15901 gtcctgcaaa agagtgagaa agcgttgtgc catcaaccat ttctaatgaa ccaccgaccg
    15961 gcacaccgtg agcaatacga gtagctttca cgttatacat tctgcacatt tcagcaatgt
    16021 agtttgcggt agcatcacct tcaatggtcg gattagtcgc caaaatcact tcgtggaaag
    16081 attcctgttc caagcgttgt tgcaataaat ctaagccgat ttcacgaggg cctataccat
    16141 caatcggcga caaatgcccc atcagcacaa aataacgccc tgaaaattgc ccggtttgct
    16201 caatcgcttg aatgtcttcc ggcatttcta ccacacaaag ttgcccgctc atctgacggc
    16261 gaggattttt acaaatcgta cactcttcct cttcggtaaa agtacggcac gatttgcaat
    16321 gtccgatatg gctcattgcc tcatttaagg cttttgacaa cgccacaccg ccggaacgat
    16381 tacgttgcaa cagatggtaa gccattcgct gtgccgattt cggtccgaca ccgggcaatg
    16441 cacgcaaggc ttccatcaaa ttttcaagta aaggactggt ttgcatactt aaattagaat
    16501 gggaatttca tacccggcgg cagttgcata ccggcagtca cacttgccat tttctctttt
    16561 tgcatttctt ctgcacggcg aaccgcatcg ttaaaggcag cggcaactaa atcttccacc
    16621 atctctttat catcttccat taatgatgga tcaatttcaa ttcggcggca attgtgagcc
    16681 ccgttaatag tgacttttac caaacccgca ccagactcgc ctgttacttc taattgggcg
    16741 atctcttctt gcattttttg catacgctct tgcatttgct gagcctgttt cattaagccg
    16801 cctaagccac cttttccaaa cataattttt cctcttaatt ttcaataaaa aataaacggc
    16861 ttattctact gaaccacttt ctaatccgca agcggttaat ttttcccaaa attttgcaaa
    16921 tttgctaaaa tggctactct ttttattcct cgcactttaa ctatggcttt aacccgttta
    16981 ttaatcaacc attttagaaa tatccaacat accgatttag catttagccc gcattttaat
    17041 tttttagtcg gggcgaacgg aagtggcaaa accagtttgt tggaatcaat tttctatctt
    17101 ggacacgggc gttcattcaa aagccatatc agcaaccgca ttatccatta cgataaagac
    17161 gatttcgtac tacacggtaa aattgacgag gcaaagcaca gttggtcggt cggcattcag
    17221 aaatttcgca gtggcgagac gacacttaaa atcaacggtg aagacggcaa caaaattgcc
    17281 gatttagccc atttattgcc gatgcaagtg atcacccccg aaggcttaac cttacttaac
    17341 ggtggtccga gctttcgccg tgcttttttg gactggggct tatttcacca gcaccctgat
    17401 ttctacgctc attggaacaa tcttcgccgt ttattaaagc aacgtaattc ggctttgcaa
    17461 caagtccgct cttatcaaga actcaaagcg tgggatatcg aattggtgaa aaccacttat
    17521 gccgtgagcg aaatgcgagc cgaatacgcc gaagcgttac gccccgaaat tgagaaaacc
    17581 tgccaatttt tcctgccgga aatcgaaatc ggcttgagct ttcatcaagg ctgggaaaaa
    17641 ggggcggatt atgccgagat tctggcacaa ggttttgagc gggataaagc tcttggctat
    17701 acgatgattg gagctcaaaa agccgatttc cgttttaaag cgaacggctt accggtggaa
    17761 gatgtgcttt cccgtgggca attaaagcta ttgatgtgtg cgttaagact ggctcaaggc
    17821 gaacatttgg tcgcccaaaa acaacgccaa tgcctatttt taattgacga ttttgcctcc
    17881 gaactcgacc caaccaaacg tgagctttta gcacatcgtt taagagaaag tggctcacaa
    17941 gtattcgtta ccgccattac tcaagatcag ctcaatcaaa tgcaatggca agacagaagc
    18001 gatgattgtt tgtttacggt aaaaaatgga gaaattcagc cacagtaagc ggtcagattt
    18061 gggggcaatt ttacaaaaat gtttcttccg atggcgcgag cgtccacgct cgtgccaaaa
    18121 caagcggata attttgcata aaaatttgca aaaaacagct ctttattaac cgcttgtaga
    18181 atattaaata gcactagcgt ggacgctagt gctatcagag caaaacctca acctaccttt
    18241 actttcttga atcgtgagcc tgttggagca atactctact ctctttcaag aactgctcgg
    18301 aataatcgcc aaaccagtga tgcacttcct caaaagcctt gataaaaccg gctttgtcgt
    18361 tgcgtttaaa gaaatctagc ccttgttcaa aactctcttt taaggtttcg atggtggcta
    18421 aattttccgg tttatcggca ataatatcgg catataagct gccgtcttgg gcaaataaac
    18481 gcccaatcat tgccaactct aagcggtaaa tcggcgaaga tagtgccaat aattgagaga
    18541 gttgcaccgg ctggcgagaa agatgtagcc cgaatgcaaa agtggaaaag tggcgtaggg
    18601 cttgaatgta ggtcattgca ttatcgtgtg ctgctgcctc aatctcttca atttttgccc
    18661 cccaaatttt gatttgctca agcaaccatt gataacgttc agggaaacgc ccgtggcagc
    18721 aagcgaccac ttgctttgcc tgacttgcaa tatccggtcc gaacatcggg tgtaaaccga
    18781 ctaccgctcc attatgcact tccagcattt tttgcaacgg ctgatgtttg acggaggtta
    18841 aatccgccaa aatcatattt tcggttaaat aagattgtaa acgctcgatg gttgctaggg
    18901 tgttggcaat cggcacacac acaataacca catctgcatt ggctaaaatc tgctcggcat
    18961 tgtcccaatc atcacgtcct aatgcctcaa cattatagcc ggatagggtt aaataattgc
    19021 caaacagccc acctaatttc cctttaccac caacaatcac gattttttga atgtccgaat
    19081 taactctttt gaagccgtgt ttgttttcat tggcataaga ttcacgcatt atacggcgta
    19141 gcacatcttc aatgagatcc gccggaatac cttgtttttc cgcttcagag cggcgggcgg
    19201 aaatcattgc ggtttctcgc tccggagcat aaacaggaat gccgtgttct gatttgactt
    19261 tcccaacttc tgccacaaga gctaagcgtt cagaaagtaa ggcgataagt tgttgatcaa
    19321 cttgatcaat ttgttctcgt aatggggcta atgggttcat atttgttacc aatttacaag
    19381 cggtcgtttt tatgcaattt tttgcaaatt atctttaacg caacttttca gcaaagtgag
    19441 ttaaaagctc ttctgtagtt tgccagtcaa tacaagcatc cgtaatagaa acaccgtatt
    19501 tcatctgctc gaacggcaat tctgatgatt gattacctgc gtgtaaattg ctttcaatca
    19561 ttaaaccgat aatcgaagta ttgccagcaa gtagctgctc taatacattt tctgccacca
    19621 gcggttggcg gcggtaatct ttattggaat tgccgtggct gcaatcaatc ataatcgctg
    19681 taggtaagtt tgcttgtttt agcacccatt cacaatcatc aacatattgc ttttcataat
    19741 ttggggtttt accgccacgt aaaataatat gtccgtctgc attacctttt gttttgagta
    19801 aagtaacttg cccctgttgg ttaatgccga taaagctatg gctttgagcg gaagattgca
    19861 tcgcattaag tgcaacggct aaatcaccat ctgtaccatt tttaaagcct accgccattg
    19921 acaaacctga ggctaattca cggtgagttt gagactcagt tgttcttgct ccaattgccg
    19981 accagctgaa caaatccgct aaatattgtg gtgtcatcgg atctaaggct tcggtcgcta
    20041 acggcaagcc aagttcggct aaatccaaac agagttttcg tgcgatacgt aagccggttt
    20101 cgacatcaaa agagccgtcc attttcggat cgttaatcag ccctttccaa cctacagtag
    20161 tgcggggctt ttcaaaataa acccgcatca caatatacaa cttatcactc acttgctccg
    20221 aaagagcttt taatttttta ccatattcaa gggcagcaac tgggtcgtga atcgaacaag
    20281 gtccaatcac aatcagttgg cgtttatctc gtctgtgaat aatatcggaa atcgttttgc
    20341 gtgaacgttc aatttgattg cgtaaatgtt ccggcaacgg aaattcttgt tttaactctt
    20401 gtggggtcag taataccttt tcatcttgga tatttacgtt atgcacgcta tcttgattaa
    20461 acactgtgtt cattttaatt tccttttgtg taaatctttt aatacacaaa ctttacaacg
    20521 taatttttaa agtttcaact actttttgtt tcacactctc caccgtgatt ttttccatcc
    20581 aatttttgcc tttagcttta gttgcccaag ctaattgctg ccaaggttta ccataagatt
    20641 gcaaaatcgc ttcatcatat accgaaacca ctttgtctaa gtcattgtaa gggcctgtcc
    20701 gtcttggatt atgaatcgca tacaacccaa tcaccggcgt attttgcgta gtggcgatat
    20761 gggcaggacc tgaatctgaa gagatcacca aatcaacctg acgaataaca cctgcaagct
    20821 gttttagcgt ggttttaccg gcaatactcg tacaattcgg ggcaagttgt tgaattttgg
    20881 ctgcggtttc catttcatat tgcgatggag aacctgcaat taatacattg atattttgct
    20941 tacttagcca gttagcaatt tctgcatagc gttccggcaa ccaatctttc tctttcttgc
    21001 ttgaacaagg agcaatgagt atatttttcc ttgtaaaatc aataaattgt ttgccataag
    21061 ctaaatcttc atcactcaca ggtaaattcc attgtgccga taaatccatt atcccaatgg
    21121 ctttggcaaa catcatttgc ccgtcaagca cgtgaggaga gtctgtcatt tctactttct
    21181 ggttggtaaa caaccattgc atttcccttg ctctgtcttg attaaagccg atttttttct
    21241 ttgctttaat cccaagcgat agaattgaag ctcggaatgc cgtttgtaaa tttaataaaa
    21301 aatcaaaccg cttgtgagaa agtttttgcc aaagtgtaaa gatacctttc caccctattt
    21361 ttttatcata aggaattaag tgaacattcg gaatatcttt cattaaatac gcttccgttt
    21421 tgccgataat ccaagtaatt tcagcactag gatattttcg ttgaatagct tgaataaccg
    21481 ctaaggtatg gcaaacgtcg ccaatggcag aaaggcggag aatacagata gaaagaagtt
    21541 tattgtgcat aataatatca atagttcaga ttacattaag ctatattaag acagaaaaaa
    21601 agccacataa agtgttttat gtggcttttg cgttaatcgt ttagattatt caactcttaa
    21661 gatacgacaa gtatttgtac cgccagcttt taattcatct ccgtgagtta aaagcactaa
    21721 ttcgccggtt aataaatagc cttgttcttt taattgagca atggcttttt tcgccccttc
    21781 cattgtgcgg ctgtcttcat tgtaatatac cggtgttaca ccacgatata acgcacaaag
    21841 gtttaatgct ttttggttac gagacatcgc ataaatcggt aaacctgagc tgatacggct
    21901 ggttaattta gccgtttcgc ctgaatgagt taatgaaata attgccgata caccttctaa
    21961 atggtttgcg gtgtacattg cagacattgc cacagcttct tcgatagatt taaacgtacc
    22021 ttccatacgg tggcgagaaa tgttaatgct tggcattgtt tcagcaccta agcacacttc
    22081 tgccattgat tttaccgttt caacagggta gtcaccgttt gcagtttcgc cggaaagcat
    22141 taccgcatca gtaccatcta acacagcatt tgcaacatcc atcacttcag cacgggtcgg
    22201 cattggtttt ttaatcatcg attccatcat ttgggttgcg gtaattacca cacgatttag
    22261 cttacgagca cggcggatta aacgtttttg cacacccact aaagccgcat caccaatttc
    22321 aacccctaag tcaccacgag caaccatcac aacgtccgca cctaaaatga tgtcgtccat
    22381 tgcttcttca gtcgcaacag tttcggcacg ttcaaccttc gctacaattt tcgcttctaa
    22441 gcctgcttct tttgctaatt cacgtgcata atgtaaatct gcacttgatt gagggaatga
    22501 aaccgctagg taatccacac cgattttcgc cgctaattta atgtcttctt tatctttgtc
    22561 ggttaatgca ggagctgata aaccaccacc taatttgtta atccctttat tgtttgataa
    22621 cgggccacca actgtcactt cagtatgaac tttaacgcct tccacttcca acactttcag
    22681 ttgaacatta ccgtcatcta acaatagaat atcaccaggt actacatcat ttggtaagtt
    22741 tttgtaatct aaacctacag cttcttgatg gccttctcca cgcggtaaat ctgcgtctaa
    22801 ggtgaattta tcaccaatat ttaagaaaat tttaccgtct ttaaatgtcg aaacacgaat
    22861 tttaggacct tgcaaatcgc ctaaaatcgc aacgtggcga cctaatcttg cagcaatttc
    22921 acgcacttta ttcgcacgtt cgatgtgatc ttcaggaata ccgtgagaga aattcatacg
    22981 aaccatattt gcaccggcag caatgatttt ttccaacgta ttgccacgat ctgttgcagg
    23041 tcccattgta caaacgatct tcgttcttct gagttttcta gacattattt gactccatca
    23101 ataaatttaa aaattaagtt aaaatctttc taagcatctt gattatgcgt taaacgaggg
    23161 tcattatacg cctaaatcaa gagagtttaa atacaactaa aggagaatgt tatgaatatt
    23221 tggattatgc gccatgggga agcaggcttt aatgcttcga gtgatgctgc tcgctgttta
    23281 accgacaatg gtataaaaaa caccatttca cagggaaaat ggttaggaga acatttagcc
    23341 aaccaacaaa ttcaattaga taaaattctc gtcagcccat accttagggc gcaacaaacg
    23401 cttgaaaatg tgcttattgg tatgcaagcg gtcaattttc cccaacattt taccaacctc
    23461 attgaaagtt gggacgaggt tacgcctgac ggaaacccgc atacagtaga aagctatcta
    23521 cattttttaa gagaggaagg cgcaaaaaat attcttctga tttcacatct cccacttgtg
    23581 ttcgatctcg tccaaatttt aacgaataac caaagcaatg tacaatttcc aacttcaacc
    23641 atagcagaaa ttaattgggt aaagacaaaa gctgagctaa ttcgagtaaa gcatacttaa
    23701 ttctttcatt tttagaatgt caatataaaa attttcaatt tttttataaa ttgtcgaa
//
LOCUS       DANMBQ010000021        23518 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.021, whole genome shotgun sequence.
ACCESSION   DANMBQ010000021 DANMBQ010000000
VERSION     DANMBQ010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23518
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.021"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            14..1159
                     /gene="lldD"
                     /locus_tag="PXE92_000771"
     CDS             14..1159
                     /gene="lldD"
                     /locus_tag="PXE92_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent L-lactate dehydrogenase LldD"
                     /protein_id="HDL5760042.1"
                     /translation="MIISSANDYRRAAKRRVPPFMFHYADGGSYAEQTLRRNVSDLED
                     IALRQRVLKDMSQLDTGIELFGEKLSMPVTLAPVGALGMYARRGEVQAAKAADNKGIP
                     FTLSTVSICPIEEVAPAIKRPMWFQLYVLKDRGFMKNALERAKAAGCSTLVFTVDMPT
                     PGARYRDMHSGMSGPYKDIRRVLQAMVHPFWAWDVGIHGKPHTLGNVSNYMGKPIDLN
                     NYIGWLTDNFDPSISWKDLEWIREFWDGPMVIKGILDPEDAKDAVRFGADGIIVSNHG
                     GRQLDGVLSSAKALPSIADAVKGEIKILADSGIRNGLDVVRMLALGADCTMIGRSFVY
                     ALSAAGQAGVENLLDIFLKEMKVAMTLTSNAKISDIGRDALVDLSNL"
     gene            complement(1213..1482)
                     /locus_tag="PXE92_000772"
     CDS             complement(1213..1482)
                     /locus_tag="PXE92_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760043.1"
                     /translation="MLSEERFGFFYIFIFIYFSLLSLSIGYIRPELRTTYDYLEIENK
                     RYYVLSIHRNNIYVLGEKTKDNDEFLFFNQDTLKYYRINITKMPN"
     gene            complement(1557..1943)
                     /locus_tag="PXE92_000773"
     CDS             complement(1557..1943)
                     /locus_tag="PXE92_000773"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760044.1"
                     /translation="MTNQKFINSSLTLAFFTLISFSTAYCYAWGIAAFHGYPWWHVEV
                     GNAGIARALAYVFGTFLTIFLFYLIGYALVNKVFKLHYFKYLGWLRVSVLVTIFSLPV
                     MISFYLFIGKVPMYLHLLYLGTTTSI"
     gene            complement(2196..3026)
                     /gene="fghA"
                     /locus_tag="PXE92_000774"
     CDS             complement(2196..3026)
                     /gene="fghA"
                     /locus_tag="PXE92_000774"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HDL5760045.1"
                     /translation="MQQFENYRCFSGEQQVWQHFSASLNCEMKFAIYLPQSAKTQKLP
                     VLYWLSGLTCTEQNFITKSGFQRYADEHHLIVVAPDTSPRGVNVANDEAYDLGQGAGF
                     YLNATQGEWTTHYQMYDYIVSELPTLINAHFPTNGKQSIFGHSMGGHGALTIAFKNPG
                     QYQSVSAFAPIVAPTQVPWGQKAFLAYLGEDQTAWKAYDSVALLEKYRPSLPILIDQG
                     SQDSFLSDQLKPEIFCETADRLGIPYQFNLRDGYDHSYYFISSFIGEHIAFHAKHLKD
                     "
     gene            complement(3106..4164)
                     /locus_tag="PXE92_000775"
     CDS             complement(3106..4164)
                     /locus_tag="PXE92_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HDL5760046.1"
                     /translation="MAYPIKSYATFSATTPLAPHSFERRELLEDDVLIDILYCGVCHS
                     DLHMARNDWGWTQSYPLVPGHEIIGRIIKVGKNAKKFQIGDLVGVGCMVDSCRECSPC
                     QHGLEQYCEVGNIGTYGGIDRFDGTPTQGGYSTCVVVSEDFVLKVSENLDTKAVAPLL
                     CAGITTYSPLRHWNVKAGSKVAVVGLGGLGHMAVKLAKAMGAEVTLFTRSLGKADDAY
                     RLGASRVVLSTDEKQMADVANTFDLIIDTVPYTHDLKPYIPTLALDGTLVLVGLVGEL
                     EQTINTVPMILGRRSISASVIGGIQETQEMLDFCAEHNIVPDVEMIDMQNINDAYERM
                     LKSDVKYRFVIDMGSLKG"
     gene            complement(4351..5286)
                     /locus_tag="PXE92_000776"
     CDS             complement(4351..5286)
                     /locus_tag="PXE92_000776"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03571 family LLM class oxidoreductase"
                     /protein_id="HDL5760047.1"
                     /translation="MNTLSPIFSQVFGQNQLTLGLIAPFMGYQNHIPDNLTTIADNAR
                     LAENLGFSALWVRDVPFYDPHFGDVGQGLDPMVTLGFLSAHTQNIALGTAGLIAPLRS
                     PIHIAKMATSVDSLSHGRFLLGLSSGDRPVEYPAFGADFASRSERFRESIDLINTLTE
                     QDFPHFKGKHYADLTDNLDLLPKPKHRLPIVAIGRARQEMDWLANVPDAWIWHGVNPA
                     DTANIINTLADLRQKDTPTAFGYAQFVEVLDDKNAKAQLFNNIYLRGGAKGLADFWAK
                     EQEKGVKHLALNLKPTQRPADEVLTELAEYALTQF"
     gene            complement(5566..5877)
                     /locus_tag="PXE92_000777"
     CDS             complement(5566..5877)
                     /locus_tag="PXE92_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5760048.1"
                     /translation="MSETEKQAINAPNAVMNGYLTMHYPDWFKPDGIYFNDGAFESFE
                     SSHKLTKDGKIRLVPTAGHTLGHLAVVVDMGEHYILIGGDASYSEQDMLAGNIDGVCN
                     A"
     gene            complement(5884..6276)
                     /locus_tag="PXE92_000778"
     CDS             complement(5884..6276)
                     /locus_tag="PXE92_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5760049.1"
                     /translation="MIKVHCLTTGWVQIKIHHQVARFFARPARVLDVLTDKKWSPKLP
                     IGCWLIEHDDGLILVDTGESSRANDKGYQPWWHPFMQFCERRGVKKHEEVGEILKANG
                     FDPLRIDTVVMTHMHGDHAGGLPNFPNS"
     gene            6408..6968
                     /locus_tag="PXE92_000779"
     CDS             6408..6968
                     /locus_tag="PXE92_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HDL5760050.1"
                     /translation="MNDLRVIKTHLAIQNALIELLDEKLFEKVQVQEIIEKALINRTT
                     FYRYYSGESDLVGKLIKEVKAEYQDLLKKRFESGNLLRFMQTIGNRLLEKRRLILALW
                     QIKTPRHHLYDDMHMLLKNAFIAHAKRITSDDKNWAEKNWDYQAHIFATIALESHKYY
                     FEQGKLLPIPQVFEEWIEMVQVLKSV"
     gene            complement(7034..8023)
                     /locus_tag="PXE92_000780"
     CDS             complement(7034..8023)
                     /locus_tag="PXE92_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HDL5760051.1"
                     /translation="MSKQIQFTKTGSPDVLQIVDVAIPAPKAHEVQIQIQAIGLNRAE
                     MMYREGAYVIDPVFPATLGYEGAGVIVAIGEGVNEVAISDKVSIIPSFMFTEYGTYGE
                     IVNMPKHAVVKHPDNLSMEQASASWMAFVTAYGGLIEFGKVQKGDFVVLGGATSSVGL
                     ASIQIAKMQGATVIALSRTHAKGDVLLEKGADFVIATSEDDVTAKLFEITNGKGVNVV
                     FDPVGRKEAAKIINAMAQDGRYIIYGALSHDDIAVPVFPILGKHLTVRGYELFEITTV
                     PEKLAQAKTFVYDGLASGQLRPEIDKIFAFDEMVKAHEYMASNQQIGKIVVKV"
     gene            complement(8237..9154)
                     /locus_tag="PXE92_000781"
     CDS             complement(8237..9154)
                     /locus_tag="PXE92_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5760052.1"
                     /translation="MTFIIGILAGVLIAFQSAINARLRMHVGAAFLTSFVSFSVGLLF
                     LLGLSLIMQQTPAFSLDNLGNVPLWAWTGGLLGMVGLTANVLIFPKLGGVQTAVMPIL
                     GQVLMGVLIDTFAWLNSPYIAFTASRLFGIGLVLFGVWIAVVLPHLSGLKRKENANLW
                     LWRAVGILGGTALATQAAVNGEFGRQPGSSLGAATVSFGVGAIGLLLVVLFYEKSLPK
                     LCQPTEGKPFWIWSGGILGSLFILAGVWLVPQIGTGSVVMLVLSGLICGSLLVDKFGL
                     FGITQKPILPLQIIGVTLLLAGVAFIRLL"
     gene            complement(9290..9949)
                     /locus_tag="PXE92_000782"
     CDS             complement(9290..9949)
                     /locus_tag="PXE92_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003672168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5760053.1"
                     /translation="MQFFNKEDVINAFHYRASTRSYDGSRKIPAEDFNYILELGRLSP
                     SSVGSEPWQFLVLQNPELRQKIKPYCWGIPTMETSSHIVVILAKKNARYDSQYFSEIM
                     DRRGLQGEAREKAMAVYKKFQEKDIGILDSERSLFDWASKQTYIALGNMMTGAALIGV
                     DSCPIEGFAYQEVNDILAAEGLFDPSEWGVSVMCTFGYRDKEIRQKARKDFETVVKFI
                     E"
     gene            complement(10134..11198)
                     /locus_tag="PXE92_000783"
     CDS             complement(10134..11198)
                     /locus_tag="PXE92_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase"
                     /protein_id="HDL5760054.1"
                     /translation="MAKFRKLFTPFNIKNLALKNRVVMPPMCQYSATNGVPNDWHFVH
                     YTSRAVGGVGLIIVEMTNVAPNGRITPNCLGLWNDEQQQAFKKLVDSVHAQGAKIGVQ
                     IAHAGRKAQDEPDAVAPSAIHYGELDYAGQNLITPRELTTDEVKALVQAFKDSVKRAV
                     EAGFDTIEIHGAHGYLIHQFYSPKSNQRSDEYGQDKMLFGEQVIQAAREVMPSEMPLI
                     VRISAQEYGENGFGLDYGLQVAKRFADAGADVLDISGGGDGVLHAGNHPEFYAGYQVD
                     FARQVKLATGKPVIAVGMLDNPAVGDHILGMGDADLVAVGRALLRDPYWVLNAQYDQN
                     AADSSEMQFVPKQYERGLFM"
     gene            11289..12197
                     /locus_tag="PXE92_000784"
     CDS             11289..12197
                     /locus_tag="PXE92_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5760055.1"
                     /translation="MSDIRTLDFNLLKAFVVLLDECNVSRAAQRLSITQPAMSGILNR
                     LRESFNDPLFVRVQHGMQPTDRALQLGQTARNILQDISSMLQPPILEPEHLNMTLRIA
                     AMDYVQQIIALPLILRLRRLAPNVKVALLPVQGQNIKTLFEQKKIDLALVSRQHLSTD
                     TLKTVLYEERYVCAMSKTHPMAQTPLSLDQFCNLPFAMLSYNGGEFSGATDLALQKIG
                     LQRKVMVSVNHISLLPQLLQGSDLVAVLPERLAKTLPNVYLQPPPIEVEGFTMMMAWH
                     ERTEQDTAHRWLREVLQGVVKPKQAL"
     gene            complement(12267..12818)
                     /locus_tag="PXE92_000785"
     CDS             complement(12267..12818)
                     /locus_tag="PXE92_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5760056.1"
                     /translation="MAKQIAVLIGSGSKTSFSHLTVRHLQKMAPASIQLNIVDIADLP
                     LYDRDLDENSPAQYTRVREAVAVADGVLLVTPEHNASFSAMLKNAIDVVSRPMGQSKW
                     IGKPAGIVTVGASPAGGVRAADQVRTITSGSFVNMPTLPFALNVGNLFTGVFDEQGEI
                     ASETLKSSMQNFINAYAQFVEKY"
     gene            13010..14371
                     /locus_tag="PXE92_000786"
     CDS             13010..14371
                     /locus_tag="PXE92_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HDL5760057.1"
                     /translation="MLFLNKIKQLFIFAFTLVLSACSLVVYKPVETIKQVNVERGYRQ
                     KNVIAESAKDGNIVVIMFSGGGTRAAALGYGVLEEFKKVRVKETNKGNTLLENIDIAF
                     GVSGGSILATYFALEGKDIIPKFADRFLKANFQKDIITEVFSLSNLPRLSSPQYGRGD
                     LLQERLNFALYHGKKFGDLVKNRKGPFAVISATDMNIGQKLTFTQETFDGLCLNLNDL
                     EISRAVAASSSVPLIFAPLTLNNNGGNCHFSMPQEFSAREKAIDGLITKNIEETNHIL
                     SLYQDSKERPFIHLVDGGLTDNLGLASVLEISDVMGIEEMYQYIHQLRVKNIVVINVN
                     AQNEVSSEIDKTANVPGVADVVNTIVNVPIDRTTQINLQRYRQFTDGWNEYANKQPSK
                     IEMHFVSLGLKELPDGDLKKDVLNIATSFYLPEEDVDKLREAARVLLQQSQEYNAALK
                     TLQ"
     gene            complement(14419..14916)
                     /gene="rraA"
                     /locus_tag="PXE92_000787"
     CDS             complement(14419..14916)
                     /gene="rraA"
                     /locus_tag="PXE92_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HDL5760058.1"
                     /translation="MRIDTSALCDLYSDQVDVVEPIFSSFGGASSFFGKITTVKCFES
                     NGLIAEVLEEEGEGRVLLVDGGGAVRRALIDAELAQLAVDNGWEGIIVYGAVRQLDIL
                     ERLDIGIHALAPIPVGADNTDIGEVDTPVNFGGVTFFPEDYVYADLTGIILSQELLDL
                     NDISE"
     gene            complement(15014..15916)
                     /locus_tag="PXE92_000788"
     CDS             complement(15014..15916)
                     /locus_tag="PXE92_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDL5760059.1"
                     /translation="MTEKVTETAPNIDVVAETEKVIHKVSNMNIETMLNEWIIPYGTK
                     ILLAIAIFVVGKFLARLISRLLGKAALKSTKDEMLQSFIVSISYFLLLLIVVIASLSQ
                     IGINTSSLVALIGAAGLAIGLSLQNSLQNFAAGVMLLIFKPFRKGDLIETGGMTGVVE
                     QMGLLVLELRTGDNKTVLLPNGKVFSDSIINYSNNPTRRIDFTFDISYESNLKEAKEI
                     IQRILDANTYVLKDPAPVVAVGALAPHSVQLVVRPWVQTPNYWAAYWEIIEQVKLAFG
                     EAGISIPYNQMELHIKSGSLENKA"
     gene            16025..16987
                     /gene="rluC"
                     /locus_tag="PXE92_000789"
     CDS             16025..16987
                     /gene="rluC"
                     /locus_tag="PXE92_000789"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HDL5760060.1"
                     /translation="MTTEKVISAGVQFFTISEDEAGQRLDNFLLAKLKGVPKSLIYRI
                     VRKGEVRVNKGRNKPEYKLQPDDLVRVPPVRVAEKNEAPISTKLNKVAELESQILYED
                     ESMLVINKPSGIAVHGGSGLSFGVIEALRALRPQARFLELVHRIDRDTSGILLVAKKR
                     SALRSLHEQLREKVVQKDYLALVRGQWQAHTKVIKAPLLKNELASGERIVRVSEEGKP
                     SETRFSIEERYANATLVKASPITGRTHQIRVHTQYAGHPIALDDKYGDAEFDSKMKEV
                     GLQRLFLHAHAIRFEHPKTGEEMVITAPLDKTLKGVLAKLRANY"
     gene            17096..17954
                     /gene="folP"
                     /locus_tag="PXE92_000790"
                     /pseudo
     CDS             17096..17954
                     /gene="folP"
                     /locus_tag="PXE92_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248541.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
     gene            17954..18301
                     /locus_tag="PXE92_000791"
     CDS             17954..18301
                     /locus_tag="PXE92_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HDL5760061.1"
                     /translation="MTTLVYGIKNCDTVKKALKWLEDHNQNPQLHDYRVDGLNADWLV
                     EMEAKFGWENLVNKRSTTWRNLDEEIKNNLNRESALKVLTEQPTLIKRPIVIKEDIAL
                     IGFNEKEYVAAFN"
     gene            18431..19579
                     /gene="dapE"
                     /locus_tag="PXE92_000792"
     CDS             18431..19579
                     /gene="dapE"
                     /locus_tag="PXE92_000792"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HDL5760062.1"
                     /translation="MKNEIISLAQNLIRRDSISPQDKGCQQEIAQRLEKLGFNIEWLP
                     FGDTLNLWATHGSENGKTEPCIVFAGHTDVVPVGDESQWAYPPFSAEIVDGMLYGRGA
                     ADMKGSLSALVVAAETFVQHHPNHKGKVALLITSDEEAAAKDGTVKVVETLMARNEAV
                     HYAVVGEPSSSKVFGDVIKNGRRGSITADLYIEGIQGHVAYPHLAENPVHTSLGFLTE
                     LTTYQWDNGNEFFPPTSLQIANIKAGTGSNNVIPGELYVQFNLRYCTEVTDEIIKAKV
                     AEMLEKHGLKYRISWNLSGKPFLAGNGKLVEAALQAVENVTKITPRLDTGGGTSDGRF
                     IALMGAEVVEFGPLNATIHKVNECVSADDLAHCGEIYYQILEKLLATA"
     gene            19690..21024
                     /locus_tag="PXE92_000793"
     CDS             19690..21024
                     /locus_tag="PXE92_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HDL5760063.1"
                     /translation="MQLYSYICLLFGLAMFISFFTRKLNENIQTTIAITASALVGSLL
                     ILTFGSLGWFNVDKLAISIFEQLDFKSFLLNGMLGFLLFAGSLGIKLPLMKEQRREIA
                     VYALFSTLVSTFLIGALIYGVARLLGLELGFVYCLLFGSLISPTDPIAVLAIIKSLKA
                     PKRLSMHVEGESLFNDGIGLVIFTTIFAVAFGGQEPNLSGITGLFLQEAVGGIVFGLL
                     TGFVAHKFISATDDGSLEILITLTIPTVGFVIANYLHVSGALTMVVAGIMIGNWTRRS
                     GFSEQSQKYLDHFWEMIDHSLNYLLFLLIGLSTLLVDFTFIGGVLMLAAIPICLLARY
                     ISLWIPYQVLKRFRTYNPYTLKIMTWGGLRGGLALAMALSVPAGAAVVSSSEGNLDVR
                     DLILLMTYAVVTFSILVQGSTVEPMIKKSKLVDPRKVALNKLGAPDDVIPHI"
     gene            21131..21640
                     /locus_tag="PXE92_000794"
     CDS             21131..21640
                     /locus_tag="PXE92_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HDL5760064.1"
                     /translation="MLFTGLLCGFLLGFVMQRGRFCITGAFRDLYVTKNSRMFVALLI
                     AITVQSIGIWLLYEAGSFSSPAEDLPLLAVIIGAFLFGIGIIYAGGCATGTWYRAGEG
                     LIGSWVALVIYGLFSASMRTGVLAPLNQELKSNVIQHRTIYETFGISPWVLVFILSVI
                     TLALSAHSI"
     gene            21669..21890
                     /locus_tag="PXE92_000795"
     CDS             21669..21890
                     /locus_tag="PXE92_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL5760065.1"
                     /translation="MNVRLPASGLVCPFPLVEAKAAMAKLNKGDSLTIEFDCTQATEA
                     IPNWAEEEGYEVTDYQQLGDALWEITVVK"
     gene            complement(21955..23463)
                     /locus_tag="PXE92_000796"
     CDS             complement(21955..23463)
                     /locus_tag="PXE92_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDL5760066.1"
                     /translation="MSKCPVTHLTMNNGAPVVDNQNSLTAGPRGPLLAQDLWLNEKLA
                     NFVREVIPERRMHAKGSGAFGTFTVTNDITKYTRAAIFSQVGKKTEMFARFTTVAGER
                     GAADAERDIRGFALKFYTEEGNWDMVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNMRS
                     ATNNWDFWTLLPEAFHQVTIVMSERGIPASYRHMHGYGSHTYSFINAANERFWVKFHF
                     HTQQGIKNLTNEEAAAIIANDRESHQRDLYEAIERGDFPKWKMFVQIMPETDADKVPY
                     HPFDLTKVWPKSDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGISVSPDRMLQ
                     ARLFNYADAQRYRLGVNHHQIPVNAPRCPVHSNARDGQGRVDGNYGSTIHYEPNSFGK
                     WQEQAQYAEPPLKINGDAAHWNYREDDADYFSQPRVLFNMMNDEQKQALFNNTAAGMG
                     DALDFIKYRHIRNCYACDPAYGEGVAKALGMTVEDAIAARATDPALGQPGLL"
BASE COUNT         6685 a         4962 c         5188 g         6683 t
ORIGIN      
        1 tatgaggttt taaatgatca tttcatctgc aaacgattac cgccgtgcgg caaaacgtcg
       61 tgttccccct tttatgttcc attatgcgga tggcggttct tacgccgagc agaccttacg
      121 tcgtaatgtg agcgatttgg aagacatcgc cctgcgtcaa cgtgtgttaa aagatatgtc
      181 gcaactagac accggcatcg agctgttcgg cgaaaaactg tctatgccgg tgaccctcgc
      241 ccctgtcggt gcattaggaa tgtatgcccg ccgtggcgaa gtgcaagcgg ccaaagccgc
      301 agataacaaa ggtattccgt ttaccctttc cactgtctct atttgcccga ttgaagaggt
      361 tgcaccggca atcaaacgcc cgatgtggtt tcagctctat gtgttaaaag atcggggctt
      421 tatgaaaaat gcattggaac gagccaaagc cgccggttgt tccacgctag tgtttaccgt
      481 agatatgccg acccccggcg cacgttatcg tgatatgcac tccggaatga gcggcccata
      541 caaagacatt cgccgtgtgt tgcaggcaat ggttcacccg ttttgggcgt gggacgtggg
      601 cattcacggt aaaccccaca cgttaggcaa tgtgtcaaac tatatgggta aaccgattga
      661 tctgaacaac tacatcggct ggctgaccga taatttcgac ccatcaattt cgtggaaaga
      721 tttagagtgg attcgtgaat tttgggacgg cccgatggtg atcaaaggca ttctcgaccc
      781 agaagatgct aaagatgccg taagatttgg tgcggacggt atcatcgtct ccaaccacgg
      841 tggtcgtcag ttagatgggg tactttcttc tgccaaagcc ctgccaagca ttgccgatgc
      901 agtaaaaggg gagatcaaaa tccttgccga ctctggtatc cgcaacggct tagatgtggt
      961 gagaatgctg gctctcggcg cagattgtac gatgatcggg cgttcctttg tttacgctct
     1021 tagcgccgcc ggtcaagccg gtgtggaaaa cctgctcgac atcttcctta aagaaatgaa
     1081 agtggcgatg acacttacca gcaatgctaa aattagcgac atcggcagag atgctttggt
     1141 agatttaagt aatctttagc tcaaatagcc acaatccgca cgttttaggt gcggattgtt
     1201 attttagata ggctaatttg gcattttggt aatattaatg cggtaatatt tcaatgtatc
     1261 ttggttgaaa aagagaaatt catcgttatc tttagttttt tcgcccagca cataaatgtt
     1321 attgcgatga atagataaga cataatatcg cttattttca atttcaagat aatcatacgt
     1381 tgttctcagc tcagggcgaa tgtagccaat actcaaagaa agtaagctaa aatagatgaa
     1441 aataaaaata tagaaaaaac cgaagcgttc ttcgcttaac attttttgaa tatctaagtg
     1501 gaatacgcgg tggccccaat gtttgtgaaa taataatact gatagggtag ttgtccctag
     1561 atagaggtag ttgtccctag atagagtagg tgtaaataca ttggcacttt gccaataaac
     1621 agatagaaac tgatcattac tggcaagcta aaaatagtaa caagaacact cacccgtagc
     1681 cagccaaggt atttaaagta atgcagctta aaaactttat taactaaagc gtatcctatc
     1741 aaataaaaaa gaaagatagt taaaaatgtg ccaaaaacgt aggctagtgc gcgagctata
     1801 ccggcattac caacctcaac atgccaccac gggtagccat gaaaagcagc aataccccaa
     1861 gcataacagt aagcggtaga aaaagagatt aaagtaaaga aagcgagagt aagagaagag
     1921 ttgatgaatt tctgattagt cataacagta aatagattgc acctacttag ttaaagatga
     1981 aacacaagaa agcagactga gtttagcttc cacccaactc ctttgtttag aggagaactt
     2041 tattaaagca cgacttttgt tgtatttcaa acctttgttt ttatacaaaa caaccgtgtt
     2101 gtaaaaaatg atcgtaaact gaccgcttgt aatgcactct gaatatatcg aaacatgata
     2161 aaaatgataa agcatgtttc gataatttac tgtctttagt cttttaaatg ttttgcatga
     2221 aaggctatat gttcaccgat aaagctacta atgaaatagt agctgtgatc gtaaccatca
     2281 cgtaaattga attggtaggg tattccaagt ctatctgcgg tttcacagaa aatttccggc
     2341 tttaactgat cgctcaaaaa gctgtcttgg ctgccttgat cgattagaat tggcaagctt
     2401 gggcgatatt tttccagcaa tgccacgcta tcatacgcct tccaagcggt ctgatcttcg
     2461 cctaaatatg ctaaaaatgc tttttgcccc caaggaactt gggttggggc gacaatcggt
     2521 gcaaatgccg atacactttg atattgcccc ggatttttaa atgcaatggt taaggcacca
     2581 tgtccgccca ttgaatgccc aaaaattgat tgtttaccgt tagtcgggaa atgagcatta
     2641 atcaatgttg gcagttcgct gacaatgtaa tcatacattt ggtaatgtgt tgtccattcg
     2701 ccttgcgtag catttaggta aaatccggca ccctgaccta aatcataagc ctcatcatta
     2761 gcgacattca cacccctagg gctggtatcc ggtgcgacca caatcagatg atgttcgtcg
     2821 gcataacgtt gaaagccaga tttagtgatg aagttctgct cggtacaggt taaaccagaa
     2881 agccaatata gtacgggtag cttttgtgtt ttagcagatt gcggcagata aatagcaaat
     2941 ttcatttcac agtttaagct ggctgagaaa tgttgccaaa cctgttgttc accgctaaaa
     3001 cagcggtagt tttcaaattg ttgcataata ttccttacaa gcggtttaat tccgctgatt
     3061 ttttgcaaaa ataaaggcgg aactcaccgc ctttatattg taatatcaac ctttcaaact
     3121 tcccatatca atcacaaacc gatatttcac gtctgatttc agcattcgtt cataagcatc
     3181 attgatgttt tgcatatcaa tcatttccac atccggcaca atgttgtgtt cggcgcagaa
     3241 gtcgagcatt tcttgagttt cctgaatgcc gccgatgaca gaggcggaaa tagagcggcg
     3301 gcctaaaatc atcggtacgg tgttgatggt ttgctccaac tcaccgacca agcccaccag
     3361 caccaatgtg ccgtccaacg ctaaggttgg gatataaggt ttcaagtcgt gggtataagg
     3421 cacggtatcg atgattaaat caaaggtatt tgcaacgtct gccatttgct tttcatcggt
     3481 agaaagcacc acacggcttg cgcccaaacg gtaagcatca tcggctttac ccagtgagcg
     3541 agtaaaaagc gtaacttccg ctcccattgc tttggcaagt ttaaccgcca tatgccccag
     3601 tccgccaagc cccacaacag cgacttttga gccagctttg acattccaat gacgcagggg
     3661 cgaataggtg gtaatgcctg cacacaaaag aggggcaacc gctttggtgt ccaagttttc
     3721 agagactttt aatacaaaat cttcactcac caccacgcat gtgctgtaac cgccttgtgt
     3781 tggtgtgccg tcaaagcggt caataccgcc ataagtgccg atgttgccca cttcgcagta
     3841 ctgctccaaa ccgtgctggc aaggactgca ttcacggcag gaatccacca tacaaccgac
     3901 accgaccaaa tcgccgattt ggaatttttt ggcgttttta ccgactttga taatacgacc
     3961 gatgatttcg tgccctggta caagcggata gctttgcgtc cagccccaat cattgcgagc
     4021 catatgcaag tctgaatggc acacgccaca gtacaaaata tcaatcaaaa catcgtcttc
     4081 aagcaattca cggcgttcaa aactgtgtgg ggcaagtggt gtggttgccg aaaaagtggc
     4141 gtaggatttg atagggtaag ccatttttgg ggtttaaatg gctgaaatgg caattactat
     4201 agtgccgatg atttattatt gaaaatcaag atttttgata aatcggtatc agttaaaatg
     4261 ataattgggg gttttcagac tgactgaaaa attattttgc ccattttaaa aacaaaaaca
     4321 ccgccctcat cacaaaagcg gtgtttttca tcaaaattgt gtcaaagcat actctgccaa
     4381 ttctgtaagc acttcatcag caggacgctg agtgggtttt aaattgagtg ccaaatgttt
     4441 cacgcctttt tcttgttctt ttgcccaaaa gtctgccaag ccttttgcac caccacgcag
     4501 ataaatgttg ttaaataact gtgctttggc gtttttgtcg tccaaaactt ccacaaattg
     4561 agcatagcca aatgctgtgg gggtgtcttt ttggcgtaaa tcggcaaggg tgttgatgat
     4621 gtttgcggtg tcggcaggat tcacaccgtg ccaaatccac gcatcaggta cattagcaag
     4681 ccagtccatt tcttgccttg ctcgtccaat cgccacaatg ggcaagcggt gtttgggttt
     4741 ggggagcaaa tccaaattgt ctgttaaatc ggcataatgt ttgcctttga aatggggaaa
     4801 atcctgctcg gttaaggtgt taatcaaatc aatgctttca cgaaaacgct cgctacgaga
     4861 ggcaaaatcc gccccaaatg cagggtattc cacaggtcta tcgccagagg ataagcccaa
     4921 taaaaaccgt ccatgactca aactatccac acttgtcgcc attttggcaa tgtgaatggg
     4981 actacgcaaa ggggcaatca gccctgccgt gccaagggcg atgttttggg tgtgggcgga
     5041 caaaaaacca agtgtaacca tcgggtcaag cccttgcccc acatcgccaa aatgagggtc
     5101 ataaaacggc acatctcgta cccacaatgc tgaaaagccc aagttttcag ccagccgtgc
     5161 attgtcggca atggtggtca aattgtctgg aatgtgattt tgatagccca taaagggggc
     5221 aattaagccc agtgttaatt gattttgccc aaaaacttgg gagaaaatgg gggaaagcgt
     5281 gttcattttg gcgtacctgt cttatttaag ataaggtatt ttaagggctt ttgagtttgc
     5341 ttaaaatggg ataaattgag aaagtgtttt gctaaattgg cataaataga cgctttcaag
     5401 ctgactgaaa atttgcaaaa tttttaataa aaatgaccgc ttgcctttca acaagcggtc
     5461 attccccttt aattttttac caccgtaaac accttatttt tcagccgata ttcacttttt
     5521 tcatcgtgag ccagttgcac aatggttggc ttgcgtttac acaattcacg cattgcacac
     5581 gccgtcaatg ttgccagcaa gcatatcttg ttcagagtaa gaggcatcgc cgccaatcaa
     5641 aatataatgc tcgcccatat ccaccaccac cgccaaatgc cccagcgtat gtcctgcggt
     5701 tggcacaagg cggattttgc cgtctttggt gagtttatga ctgctctcaa aactttcaaa
     5761 cgccccatca ttaaaataga tgccatcagg cttaaaccaa tcaggatagt gcattgttaa
     5821 ataaccgttc atcaccgcat tgggggcgtt gattgcctgt ttttcagtct cactcatcac
     5881 aaatcagctg tttgggaaat tgggcaatcc gcctgcgtgg tcgccgtgca tatgggtcat
     5941 taccaccgtg tcaatgcgta aagggtcaaa gccgtttgcc tttaaaattt cgcccacttc
     6001 ttcgtgtttt ttgaccccac gccgttcgca aaactgcata aacgggtgcc accacggctg
     6061 atagcccttg tcgttggcac gactgctttc gcccgtatcc accaaaatca aaccgtcatc
     6121 gtgttcaatc agccagcaac caatcggcag tttaggcgac cattttttat cggtcagcac
     6181 atcaagcaca cgggcaggac gggcaaaaaa gcgtgccact tgatgatgaa ttttgatttg
     6241 tacccaacct gttgtcagac aatgcacttt aatcattttt gtgttctcat taaaaaatcg
     6301 tgggcatatt gtagaaagtg cggtaacttt tcacaaacat taaaaagttc gtatttggct
     6361 ggatatgcag ataaaattac aaaaatgtat gcttattttg aaaaaagatg aacgatttaa
     6421 gagtaatcaa aacccatcta gcaatccaaa acgctttgat tgaattatta gatgaaaagc
     6481 tgtttgaaaa agtgcaagtc caagaaatca ttgaaaaagc cttgattaac cgcaccactt
     6541 tttaccgtta ttattcgggc gaaagtgatt tggtcggcaa attgataaaa gaggtgaagg
     6601 cggaatatca agacctgctc aaaaagcgtt ttgaaagcgg taatttgctg cgatttatgc
     6661 aaaccattgg caaccgctta ttggaaaaaa gacggctgat tttggcactt tggcaaatca
     6721 aaacccctcg ccatcatttg tatgacgata tgcacatgct gttaaaaaac gcctttatcg
     6781 cccacgccaa acggataaca tcagatgata aaaactgggc tgagaaaaat tgggattacc
     6841 aagcccatat ttttgccacc attgcccttg aaagccataa atattatttt gaacaaggca
     6901 aacttttgcc cattccacag gtgtttgagg agtggataga aatggtgcag gtgttgaaaa
     6961 gtgtttagaa ataactggta aaattttcca taaaaaacac cgctttcatc acaaaagcgg
     7021 tgctttcaaa tcatcaaacc ttaaccacaa tcttaccaat ctgctgattg cttgccatat
     7081 attcgtgagc tttaaccatt tcatcaaagg caaagatttt gtcaatttca gggcgtaact
     7141 gaccgcttgc caaaccgtca tagacaaagg ttttggcttg tgccaatttt tcaggtacgg
     7201 tggtaatttc aaagagttca tacccccgca cggtcaaatg cttacccaaa atcgggaaca
     7261 ctggcacagc aatatcatca tggcttaacg ctccataaat gatgtaacga ccatcttgtg
     7321 ccattgcatt gatgattttt gccgcctctt ttctgcccac agggtcaaat accacattga
     7381 cgcctttgcc attggtgatt tcaaaaagtt tggcggttac atcgtcttcg cttgtggcaa
     7441 tcacaaaatc cgctcctttt tccaaaagta catcgccttt ggcgtgggtg cgagacaagg
     7501 caatcacggt tgccccttgc attttggcga tttggatact ggctaaacca accgaactgg
     7561 ttgcaccgcc cagcaccaca aaatcgcctt tttgtacttt gccaaactca atcagtccgc
     7621 cataagcggt aacaaacgcc atccaactgg cggacgcttg ttccattgac aaattatcag
     7681 ggtgcttgac cacagcgtgt tttggcatat tgacgatttc gccataagtg ccgtattcgg
     7741 taaacataaa ggacggaata atgctcacct tatcgctaat ggcaacttcg ttcacaccct
     7801 cgccaatcgc cacaatcaca ccagcccctt cataacccaa agtcgcaggg aatacagggt
     7861 caatcacata cgccccttca cggtacatca tttcggcacg gtttaagcca atggcttgga
     7921 tttggatttg tacttcgtgt gcttttggtg caggaattgc tacatcaacg atttgcaaga
     7981 catcaggcga acctgttttt gtaaattgga tttgtttgct cattgttttg accttttgtg
     8041 taaataatgg gcgtatttta atgcaatgaa tttattttaa acacaacatc aattgcaaaa
     8101 cacttttgct aaatttacat aaatacattt tcacaatgtc tgaaaagttg ttttgcaaat
     8161 tttaaaaaga aaaccaccgc ttgccgatca caagcggtgg tttttgtggg ttattttgca
     8221 agaggtgtca gcttggctac agtaagcgga taaatgcgac gccggctaag agtaaggtaa
     8281 cgccgatgat ctgcagcggt agaatgggtt tttgtgtaat gccgaacaga ccgaatttat
     8341 ctaccagcag gctgccgcaa atcaggccag agaggacgag catcaccacc gagcctgtgc
     8401 cgatttgggg gacgagccaa acgccagcga ggataaacag gctgcccagt atgccgccgc
     8461 tccatatcca aaacggtttg ccttcggttg gctggcagag tttcggcagg cttttttcat
     8521 aaaacagcac taccagtaat aagccgatgg caccgacacc gaaggagact gttgctgcgc
     8581 cgagtgatga gccgggctgt ctgccgaatt cgccattaac ggcggcttgg gttgctaatg
     8641 cggttccgcc taatatgccg actgcgcgcc acagccataa atttgcgttt tctttgcgtt
     8701 ttagaccgga cagatggggc agtaccacgg caatccatac gccgaataag actaaaccaa
     8761 tgccaaacag gcggctggcc gtgaaggcta tgtaaggcga gttaagccaa gcgaaagtgt
     8821 cgatcagcac gcccatcagc acttggccta aaatcggcat gaccgcagtt tgtacgccgc
     8881 cgagcttggg gaagatcagt acgtttgccg ttagccccac catgccgagt aatccgcccg
     8941 tccatgccca taaggggacg ttgcctaaat tgtcgaggct aaatgctggt gtttgttgca
     9001 tgatgagcga gagtccgagt agaaacagga ggcctacgct gaaagagaca aacgaggtta
     9061 aaaatgccgc acccacgtgc atacgcaaac gggcgttgat ggctgattga aatgcaatca
     9121 gcacgccggc taaaataccg ataataaatg tcatgactaa ctgggttgtg ctgccgcctc
     9181 aaaatgagtg gtggttgaaa agaaatgccg tctgaatgcg gattcagacg gccttaaggc
     9241 ttggtatcgg cgtttacctg atgttgaata gccgttttgc ctagccggtt tattcgatga
     9301 atttcaccac ggtttcgaaa tctttacgtg ctttttggcg gatttcttta tcacggtaac
     9361 cgaaggtaca catcaccgat acgccccatt cgcttgggtc aaataatcct tccgctgcca
     9421 aaatatcgtt gacttcttgg taagcgaaac cttctatcgg acaagaatct acgccaatta
     9481 aagctgcacc ggtcatcata ttgcccaatg cgatgtaggt ttgtttgctt gcccagtcaa
     9541 acaggctgcg ttcgctgtct aaaatgccga tatctttctc ttggaatttt ttatacacgg
     9601 ccatggcttt ttcgcgcgct tcgccttgta aacctcgtct atccataatt tcagaaaaat
     9661 attggctgtc gtaacgggca tttttcttcg ctaaaatcac cacgatatgg cttgaggttt
     9721 ccatagttgg aatgccccag cagtaaggtt tgattttttg ccgtaattca gggttttgca
     9781 acactaaaaa ctgccaaggc tctgagccta ccgaacttgg acttaaacga ccgagttcca
     9841 gaatatagtt gaaatcttca gccggaattt ttctgctgcc gtcgtaagaa cgggtagatg
     9901 cacggtaatg aaaggcattg attacgtctt ctttgttgaa aaattgcatg gaacactcct
     9961 aaaaatgcaa aacagtcttt tcagacggtc tgaaaagtct agatgaaata cggataagta
    10021 taaaagattt aagttatttt taataattga taattttgat atttaggtat aagttgacgt
    10081 gatgagaaaa aacagaccct ctgaatgttc aggcggtctt taacgttggt tgtttacata
    10141 aataatccgc gttcatattg cttcggtaca aactgcattt cactgctgtc tgctgcattt
    10201 tggtcatatt gcgcattcaa tacccagtac ggatcgcgca ataaggctct tcccacagcc
    10261 actaaatccg catcgcccat acctaagata tgatcgccta ccgccggatt atccaacata
    10321 cctactgcaa ttaccggttt gcccgtagcg agcttcactt gacgggcaaa gtctacttgg
    10381 taacctgcgt aaaattcggg gtgattacct gcatgcaata caccatcacc accaccgctg
    10441 atgtctaaga catctgcgcc tgcatcggca aaacgtttcg ctacctgcaa accataatcc
    10501 aagccaaagc cgttttcacc gtattcttgt gcagaaatgc ggacaattaa cggcatttca
    10561 gacggcatca cttcacgtgc tgcctgaatc acttgctcgc caaacaacat tttgtcttgg
    10621 ccgtactcat cactgcgctg attggatttc ggcgaataga attggtgaat tagataaccg
    10681 tgtgcgccgt ggatttcaat tgtatcaaag cctgcctcaa cggcacgttt gaccgaatcc
    10741 ttaaaggctt gaaccaatgc tttgacttcg tctgtcgtca gctcgcgagg tgtaatcaga
    10801 ttttgtccgg cataatccaa ctcaccgtag tgaattgcac ttggagccac tgcatccggc
    10861 tcgtcttggg ctttgcgtcc ggcatgggcg atttgcacac cgatttttgc cccttgagca
    10921 tgaacgctgt ctaccagttt tttgaatgcc tgttgttgtt catcgttcca taagcctaag
    10981 cagtttggcg taattctgcc gtttggcgcc acattggtca tctccacaat aatcaagccg
    11041 acaccaccta ctgcacggct ggtgtaatgc acgaaatgcc aatcgttcgg tacgccgttg
    11101 gttgccgaat attgacacat tggtggcata accacacggt ttttcaatgc taagttttta
    11161 atgttaaacg gggtgaataa ttttctgaac ttcgccatgt tgccttcctt aatgaaatag
    11221 attaggtgga atgataattc agtgctatta tctattcaaa ttgattattg tgatagttag
    11281 gtataaaaat gagtgatata agaacactgg atttcaattt gctcaaagct tttgtggtgc
    11341 tgctggacga atgcaacgtt agccgggcag cacaacgatt atccatcacc caaccggcaa
    11401 tgagcggtat tttaaaccgc ttgcgcgaga gttttaacga tccgttattt gtgcgagtgc
    11461 aacacggtat gcagccaacc gaccgcgcgt tgcaactggg gcaaaccgca cgcaacattc
    11521 tgcaagatat cagctccatg ctgcaaccac ccatattgga accggaacat ctgaatatga
    11581 ccttgcgtat tgccgcaatg gattatgtac aacaaattat tgccttgccg ctgattctgc
    11641 gtttaagacg gcttgctccg aatgtaaaag tcgccttact gccggtgcag gggcaaaata
    11701 tcaaaacttt gttcgagcaa aaaaaaatcg atcttgcctt ggtcagccgc caacatttaa
    11761 gcacggatac gctgaaaacg gtattatatg aagaacgcta cgtatgcgcg atgagcaaaa
    11821 cacacccgat ggcgcaaaca ccgctatcgc tcgatcaatt ctgcaatctt cccttcgcaa
    11881 tgctttctta caacggcgga gaattcagcg gagctacgga tctagcgtta caaaagatag
    11941 gactacagcg caaagtaatg gtctcggtaa accatatttc cctgctgccc cagctgctac
    12001 aaggttccga cttagtcgca gtattgcccg aacgcttagc aaaaacctta cccaatgttt
    12061 atttacaacc tccgcctata gaggtagaag gcttcaccat gatgatggct tggcacgaaa
    12121 gaaccgaaca agatacggcg catcgatggt taagagaggt gctgcagggt gtggtaaaac
    12181 ctaaacaggc tctttaatta ttctttcttt tgctatgaaa aaagccgttt atatttttag
    12241 ataaacggct tttttgcatt ctaatattag tatttttcta caaactgagc ataggcatta
    12301 atgaagtttt gcattgagct ttttaatgtc tcagaggcaa tttcaccctg ttcatcaaat
    12361 acgcctgtaa ataagtttcc tacgtttaat gcgaaaggta aggttggcat atttacaaat
    12421 gagcctgaag taatagtacg tacttgatca gctgcacgta caccgcctgc cgggcttgcg
    12481 ccaacggtta cgatacctgc cggtttgcca atccatttgc tttgccccat tgggcgagaa
    12541 accacgtcaa tcgcattttt aagcattgca gaaaagcttg cattatgctc aggtgtgact
    12601 aataacacgc catctgccac agcaaccgct tcacgcactc tggtgtattg tgccgggctg
    12661 ttttcatcta aatcacggtc gtaaagtggt aagtctgcaa tatccacaat gtttaattga
    12721 atgcttgcag gtgccatttt ttgtaagtga cgaacagtca agtgactaaa tgaagttttg
    12781 ctgccgctac caattaatac tgcaatttgt tttgccattt tataattcct tagtacatag
    12841 agaatatagg cattttatcc ctttcaatct gtttcataaa gcgcttatga tgaaaagcac
    12901 tatttactta tattaaataa ttttgcaaat tttaggccaa atttgaccgc ttttatcttt
    12961 agctaaaaag gttataattt gtagaaatag atcttaattt agggttttta tgctttttct
    13021 aaacaaaata aaacagcttt tcatcttcgc ctttacgcta gtgttatctg cttgcagttt
    13081 ggttgtttat aagccagttg aaacaattaa acaggtaaat gttgaaagag gttatcgaca
    13141 aaaaaatgtg atcgctgaaa gtgcaaaaga cggtaatatt gttgtcatca tgttttcagg
    13201 tggtggaaca agagcggcgg cgcttggtta tggagtgttg gaagagttta aaaaggtaag
    13261 ggtgaaagaa acaaataaag gtaatacttt attagagaat atagatattg cctttggcgt
    13321 atcaggtgga tcgatattag ccacttattt tgcgttggaa ggaaaggata tcattcctaa
    13381 atttgctgac cgttttttaa aagcgaactt tcaaaaagat attattacag aggtgttttc
    13441 gttatccaat cttcctcgtt taagttctcc tcaatatggg cgtggtgatt tattgcaaga
    13501 acgcttaaat tttgcccttt atcatggtaa aaagtttggt gatttagtga aaaatcgtaa
    13561 aggacctttt gctgtgatta gcgcaacaga catgaacatt ggtcaaaaac tgacctttac
    13621 gcaagaaacc tttgatgggc tttgtttaaa tttgaatgat ttagaaattt cccgtgctgt
    13681 tgctgcttct agttctgttc ctctgatttt tgcgccgctt acactgaata acaatggtgg
    13741 aaattgccat tttagtatgc cacaagaatt tagtgctaga gaaaaagcaa ttgatggact
    13801 aattacaaaa aatattgaag aaacgaatca tatactcagc ctttatcaag atagtaaaga
    13861 acgccccttt atccatttag ttgatggtgg attaacagat aatttagggc ttgccagtgt
    13921 gctggaaata tctgatgtta tgggtattga agagatgtac cagtatattc atcagcttag
    13981 ggtgaaaaat attgtagtga ttaatgtaaa tgcgcaaaat gaagtatcta gcgagatcga
    14041 taagaccgca aatgtaccgg gggtggctga tgtagtgaat acaatagtta atgtgccaat
    14101 tgatagaacg acacaaatta atttacaacg ttatcgccag tttacagatg gttggaatga
    14161 atatgcaaat aaacagccat caaagatcga aatgcatttt gtcagtttag gtttaaaaga
    14221 attacctgat ggtgatttaa aaaaagatgt gctaaatatt gcaacatcat tttatttgcc
    14281 ggaagaggat gtagataaat tacgtgaagc tgctcgggtt ttattgcagc aatctcaaga
    14341 atataatgcg gcattaaaaa cactgcagta gtaaaaaacc gaccaagcgg tcggtttttg
    14401 gtattttttt gcaaatattt attcgctgat gtcgtttaaa tccaacaact cttgcgaaag
    14461 aataatgccg gttaagtcag cataaacgta atcttcgggg aagaaggtta caccgccaaa
    14521 attcacaggc gtatccactt cgccaatgtc ggtattatct gctcccactg gaattggcgc
    14581 taaagcatga ataccgatat ctaatctttc caaaatatct aattggcgaa ccgcaccata
    14641 aacgatgata ccttcccagc cgttatctac agcaagttga gccagctctg cgtcaattaa
    14701 ggcacgacga accgcaccgc caccatcgac taacagcact cgcccttcac cctcttcttc
    14761 caaaacttca gcaattaaac cgttgctttc aaagcattta accgtggtaa tcttcccaaa
    14821 gaaggaagaa gcaccgccaa agcttgagaa aattggttca accacatcaa cttggtcaga
    14881 ataaagatcg caaagtgcag aggtatcaat acgcataata tgctcctgtt cgtagattat
    14941 ttagctaaag tataaacctt cgcccaaaat ttgcaaaatt ttatcgaaaa aagaccgctt
    15001 acaggctttt ttcttatgct ttattttcta gtgaaccgct tttaatatgc aattccattt
    15061 ggttgtaagg aatagatata cctgcttcac caaaggctaa ttttacttgt tcgataattt
    15121 cccaatatgc tgcccagtaa tttggtgtct gaacccaagg gcgaacaaca agttgaacac
    15181 tatgcggtgc taaagcgccg actgctacta caggtgccgg atcttttaat acataagtat
    15241 tggcgtctaa aatgcgttgg ataatctctt tcgcctcttt taagttagat tcataagaaa
    15301 tatcaaaggt gaaatcaata cggcgtgtcg ggttgttaga gtagttgatg atgctgtcag
    15361 aaaacacttt gccgtttggt aataacacgg ttttgttatc gccggtgcga agttccaaca
    15421 ctaaaagccc catttgttca accacgccgg tcattccgcc ggtttcgatt aaatcccctt
    15481 tgcgaaatgg cttgaagatt aacaacatca cgccggcagc aaagttttgt aatgagtttt
    15541 gtaatgataa accgatggct aaaccggcag caccgattaa tgcgaccagc gagctggtgt
    15601 taatgccgat ttgtgaaagc gaggcaatca ccacaattaa cagcagtaaa aaatagctga
    15661 ttgagacaat aaaactttgc agcatttcat ctttggttga ttttaatgcg gctttaccga
    15721 gtaaacggct aattaggcgg gcaagaaatt tcccgactac aaaaatcgca atcgccagta
    15781 aaattttggt gccataaggg ataatccact catttagcat agtttcaata ttcatattac
    15841 tgactttgtg gattactttt tcggtttcgg caaccacgtc aatgtttgga gctgtttcgg
    15901 tgactttttc agtcatattg tttccttaaa attaaaatga aaaataagcc tagcgaattt
    15961 gcctcactcg ctaagcggtt ttgtgctaga atttagagca aaattttctc taaaagacaa
    16021 gataatgaca acagaaaaag taattagtgc cggcgttcaa ttttttacga tcagtgaaga
    16081 tgaagccgga cagcgtttag ataatttttt attggcaaag ctcaaaggcg tgccgaaaag
    16141 tttgatttac cgcattgtgc gaaaaggcga ggtgcgggtg aataaaggac gaaacaaacc
    16201 cgaatataaa ttacagcctg atgatttagt gcgtgtgccg ccggtgcgtg tggcggaaaa
    16261 aaatgaagcc ccaatttcga ctaaattaaa caaagtggcg gagctggaga gccaaattct
    16321 gtatgaagat gagtcaatgc tagtaattaa caaaccttca ggcattgcag tacacggtgg
    16381 cagtggttta agttttggtg tgatcgaagc cttgcgtgca ttacgtccac aggctcgttt
    16441 cttggaattg gtacaccgta tagaccgtga tacatcaggc attttgctgg tggcgaaaaa
    16501 gcgttcggcg ttacgttcct tgcacgaaca actgcgtgaa aaagtagtac aaaaagacta
    16561 tcttgccctt gtgcgagggc aatggcaggc tcataccaaa gtgattaaag ctccattgct
    16621 aaaaaacgaa cttgccagcg gtgagcgaat tgtacgggtg agtgaagagg gtaaaccgtc
    16681 cgaaacccgt ttcagcattg aagagcgtta tgccaatgcc actttggtga aagcttcgcc
    16741 tattaccgga agaacccacc aaatccgtgt gcatacccaa tatgccggac acccgattgc
    16801 gttagatgac aaatatggtg atgcggaatt tgacagcaaa atgaaagaag tgggcttaca
    16861 gcgtttattt ctgcacgccc atgctattcg ttttgaacac cccaaaaccg gcgaagaaat
    16921 ggtcattacc gccccgctgg ataaaacttt aaaaggcgta ttggcaaaat taagggctaa
    16981 ttactaaata acttaatgag agagtaagat agcgcaagcg tccacgcttg tgctgtaaat
    17041 caacatagag tggtacaagc gtggacgctt gcaccaacaa aatataagca aaaatatgca
    17101 aatccatttc aaaaattttc aaaaaaatga ccgcttgtta gatttaacca caccgcaaat
    17161 tatggggatc ttaaacttca cgccggattc attttccgat tcgggcaagt ttttttccct
    17221 cgataaagcc ttgttccaag cggaaaaaat gttagctgat gggggcaagc attattgata
    17281 ttggcggtga atccacccgc cctaatgcgg cgattgtgag cttagaacaa gaattagagc
    17341 gtgttgtgcc ggtggtggag gcgatccgca gccgttttga ttgcttgatt tcggttgata
    17401 gctccaaagc agaagtattc aaagagtcgg caaaagtcgg tatggatatc attaacgata
    17461 ttcgagcctt aaccgagccg aatgcgttgg cagcggcagt agaattgggc ttgccggttt
    17521 gtttaatgca tatgcaaggc aacccgcaaa caatgcaaca aaatccgcac tatgatgatg
    17581 tgttggaaga tgtggcagat ttcttaaatc aacggatttt cgagtgcatc accgcaggca
    17641 ttcccaaaga acacattatt ttagaccccg gttttggctt tggtaaaagc gtgaaacaca
    17701 attaccaatt attgaaacac cttaaagcct ttgtggattc aggcttccct gtgcttgccg
    17761 gactttcccg taaatcaatg attggtgcgg tgttagataa accggtagaa caacggctac
    17821 ttggctctgt agtaggggcg ttattagccg ctcaaaatgg ggcgaaaatt ttacgggtgc
    17881 acgatgtggc agaaaccgcc gatgcgttaa aaatctggca ggcaatgctg gaatcagata
    17941 atgaggaaaa atgatgacaa ccttagttta tggcattaaa aattgcgaca cagtaaaaaa
    18001 agccttgaaa tggctcgaag atcataatca aaacccacaa ctgcacgatt accgtgtgga
    18061 cggtttaaat gccgattggt tagtggaaat ggaagcaaaa ttcggttggg aaaacttagt
    18121 taataaacgt agcaccactt ggcgaaacct tgatgaggaa attaaaaaca accttaaccg
    18181 tgagtcggca ttaaaagtgc taaccgaaca gccgacccta attaaacgcc cgattgtgat
    18241 taaagaggat attgctttga ttggttttaa tgagaaagag tatgtggctg cgtttaatta
    18301 attttttccc ctgcttgtag ggacaggtcc tgtgcctgtc cgtagtcttt aggattgttc
    18361 gggcgggcac aggacccgcc cctacaggat atatagcaaa aaattcaccc aaaacaaccg
    18421 cttgtaacct atgaaaaatg aaattatttc ccttgcacag aacctaatcc gccgtgattc
    18481 catcagccca caagacaaag gctgtcagca agaaattgca caacgtcttg aaaaactggg
    18541 ctttaatatt gaatggttgc cgtttggcga caccttgaat ttatgggcaa cgcacggctc
    18601 ggaaaatggt aaaacagagc cttgcattgt gtttgccggg catacagatg tggtgccggt
    18661 aggcgatgaa agccaatggg cttatccgcc gttttcggct gagattgtag atggaatgct
    18721 ttatgggcga ggggcggcag atatgaaagg ctcgctctcg gcgttagttg tggcggcaga
    18781 aactttcgtg caacatcacc caaaccataa gggcaaagtg gcattattga ttacctccga
    18841 tgaagaggca gcagccaaag acggtacggt aaaagtggtt gaaaccttaa tggctcgcaa
    18901 tgaagcggta cattatgcgg tagtgggcga accgtctagt agcaaggtgt ttggcgatgt
    18961 gattaaaaac ggcagacgtg gttcaattac ggcagatctc tatatcgagg gcattcaagg
    19021 gcacgttgcc tatccacatt tggcggaaaa tccggtgcat acgtcactgg gttttttaac
    19081 cgagctgacc acttatcagt gggataacgg taacgaattt ttcccgccta ccagtttgca
    19141 aattgccaat atcaaagccg gcacaggcag taataatgtg attccgggcg agctttatgt
    19201 gcagtttaac ttacgttatt gcactgaagt gaccgatgaa atcatcaaag ccaaagtagc
    19261 ggaaatgctc gaaaaacacg gtttgaaata ccgaataagt tggaatttat caggcaaacc
    19321 attccttgcc ggcaatggaa aattggtcga agccgcctta caagcggtcg aaaatgtcac
    19381 aaaaattacg cctcgtttag acacaggtgg cggtacttcg gacggtcgtt ttattgcatt
    19441 aatgggggca gaggtagtgg aatttggacc actgaacgcc actattcaca aagtgaatga
    19501 gtgtgtgagt gcggatgatt tggcacattg tggcgaaatt tattatcaaa ttttagaaaa
    19561 attattggca actgcataac cctaaatagg cagaatgtta tcaaattgta ttctgcctat
    19621 tttttatgta gctattctgt taaacagcgt ttacactagc ggcagttttt atatttatag
    19681 gtaaatgtta tgcaactcta ctcttatatc tgcttgctgt ttgggcttgc gatgtttatt
    19741 tcgtttttta cccgaaaatt aaacgaaaat attcaaacca ctattgcaat tacagcctct
    19801 gcccttgtcg gctcccttct tattcttacc ttcggttctc tcggctggtt taatgttgat
    19861 aaacttgcca tttccatttt tgaacaactc gattttaaaa gcttcctgtt aaacggaatg
    19921 ctggggttct tgctttttgc cggttcactt gggattaaac taccattaat gaaagagcaa
    19981 cggcgggaaa ttgcagttta tgccttattt tcaaccttag tttctacttt cttgatcggt
    20041 gcgttaattt atggcgtggc aaggctactt gggttagagc tcggctttgt gtattgtttg
    20101 ctgtttggct cactgatttc gccaaccgac ccgattgccg tattggcaat tatcaaaagc
    20161 ctgaaagccc caaaacgcct ttcgatgcac gtggagggcg aatctctgtt taatgacggt
    20221 atcggcttgg tgatttttac cactatcttt gccgttgctt ttggcggaca agaaccaaac
    20281 cttagcggta ttaccggact gttcttgcaa gaagcggtag gcggtatcgt ttttggctta
    20341 ttaaccggtt ttgtggcaca taaatttatt tccgcaaccg atgacggaag ccttgaaatt
    20401 ttaattacgc taacgattcc aacagtcggc tttgtgattg caaactacct acacgtttca
    20461 ggggcattaa caatggtagt tgccggtatt atgattggca actggactcg ccgttccggt
    20521 ttctccgaac agagccaaaa atatcttgat cacttctggg agatgatcga ccattcatta
    20581 aactacctgt tattcctgct tatcggctta agtacactgt tagttgattt cacctttatt
    20641 ggtggggtgt taatgttggc agcaattcca atttgtttgc ttgcacgcta tatcagcctg
    20701 tggattccat accaagtgtt aaaacgtttc cgtacttata acccgtacac cttaaaaatt
    20761 atgacttggg gcggtttacg tggtggatta gcccttgcga tggcactttc cgtaccggca
    20821 ggggctgcgg tggtatcgag ctcagaaggc aatcttgatg tacgtgattt gattttgtta
    20881 atgacttatg cggtagtcac tttctcgatt ttagtacaag gttcaacggt tgaaccgatg
    20941 ataaaaaaat ccaagttggt agatccaaga aaagtggcac tcaataaatt aggtgcacct
    21001 gatgatgtaa ttccacatat ttaatagcat ttataactga ataacatatc attttgctaa
    21061 agattattag ccatctagac ggctttatat ttaaatacct ctcacgttaa tttgttgaga
    21121 ggtatttttt atgttattca caggattatt atgtggcttt ctactcgggt ttgtgatgca
    21181 aagagggcgt ttttgtatta ccggagcatt tcgtgatctc tatgtaacaa agaatagccg
    21241 tatgtttgtg gcacttttaa ttgcaattac ggtgcaatcg atcgggattt ggcttttgta
    21301 tgaagccggc tcttttagtt ctccggcgga agatttgcct ttgctcgcag tgatcattgg
    21361 ggcatttctg tttggtatcg gcattattta tgcaggcggt tgtgctacag gaacgtggta
    21421 tcgtgccggt gagggtttaa tcggcagttg ggttgcactg gttatttatg ggctgttttc
    21481 tgcttctatg cgaaccggtg tgttagcccc acttaatcaa gagctaaaaa gcaatgtaat
    21541 tcaacaccgc acgatttatg aaacatttgg tatttcccct tgggtgttag tgtttatcct
    21601 gagtgtaatt acattggcat tatccgccca cagcatttaa aaggttaatt ttttaaggag
    21661 taataaagat gaacgtacgt ttacctgcct cagggcttgt ttgcccgttt ccattagtcg
    21721 aagccaaagc ggcgatggca aaattgaata aaggcgatag cttaacgatt gaatttgact
    21781 gtactcaagc aaccgaagcc attccaaatt gggcggaaga ggaaggctat gaagttaccg
    21841 attaccaaca acttggtgat gccttgtggg aaattacggt ggttaagtaa ttagcaataa
    21901 aaaagctcta cttttttgta gagcttttgc tttgagtttt gtatttacta aggattagag
    21961 taaacccggt tgacctaatg ctgggtctgt tgctcttgca gcaatagcat cttcaaccgt
    22021 catacctaat gcttttgcca caccttcacc atatgccgga tcacaggcat agcagttacg
    22081 aatatgacgg tatttaatga agtctaatgc atcgcccata cctgcagcag tattattgaa
    22141 taatgcttgt ttttgttcat cattcatcat attgaacaat acacgtggtt ggctgaagta
    22201 gtcagcatcg tcttcacgat agttccagtg ggctgcatca ccattaattt tcagtggtgg
    22261 ctctgcatat tgagcttgtt cttgccattt gccgaagctg tttggttcgt agtgaatggt
    22321 actaccgtag ttaccgtcca cacgaccttg accgtcacga gcgttgctat gaaccgggca
    22381 acgtggagcg tttacaggga tttggtggtg gttcacacct aaacggtagc gttgagcatc
    22441 cgcatagttg aataaacgag cttgtaacat acggtctgga gacacgctga tgcccggcac
    22501 taagttactt ggtgcgaatg cagattgttc cacatcagca aagaagtttt cagggttacg
    22561 atttaattca aactcaccca cttcaattaa cggatagtct gatttcggcc ataccttagt
    22621 taaatcgaac gggtggtatg gtactttgtc tgcatcagtt tcaggcataa tttgaacaaa
    22681 cattttccat ttcgggaaat cgccacgctc aatcgcttcg tataaatcac gttggtgact
    22741 ttcacgatcg ttagcgataa tagcggctgc ttcttcgtta gttaagtttt taatgccttg
    22801 ttgtgtatgg aaatggaatt tcacccagaa acgctcatta gctgcattga tgaagctata
    22861 agtatgtgag ccataaccgt gcatatgacg atatgaagcc ggaataccac gttcactcat
    22921 tacaatagtc acttggtgaa atgcttctgg taataatgtc cagaaatccc agttgttagt
    22981 tgcagaacgc atattcgtgc gtgggtcacg tttaaccgct ttgtttaaat ccgggaattt
    23041 acgtgggtca cgtaagaaga acacaggggt gttgttaccc accatatccc agttaccttc
    23101 ttcggtatag aattttaatg cgaaaccacg aatatcacgc tcagcatctg ccgcaccacg
    23161 ttcacctgca acggtggtga aacgagcaaa catttcagtt tttttaccga cttggctaaa
    23221 aattgccgca cgagtgtatt tagtgatgtc gttagttaca gtgaaagtac cgaacgcacc
    23281 ggaaccttta gcgtgcatac gacgctcagg aatgacttca cgcacgaagt tcgctaattt
    23341 ttcatttaac cataaatctt gcgctaataa tggaccacgt ggacccgctg ttaagctgtt
    23401 ttggttatca acaacaggtg caccgttgtt cattgtcaaa tgtgtaacag gacatttaga
    23461 cataatagaa tcctcataaa ttagaaataa gataggtaat taatccgaag agaattat
//
LOCUS       DANMBQ010000022        23480 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.022, whole genome shotgun sequence.
ACCESSION   DANMBQ010000022 DANMBQ010000000
VERSION     DANMBQ010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23480
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.022"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            18..833
                     /locus_tag="PXE92_000797"
     CDS             18..833
                     /locus_tag="PXE92_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL5760067.1"
                     /translation="MTLPFRAIISDLDGTLLNANHKIGDFTIDTLEQLSKKGVDIFFA
                     TGRNHPDVSQIIGKVNVKNAMLVTSNGARANNLEGKKILNHYLPEDLAFELMNIEFDD
                     QNVCLNSYQGDEWFINKEIAELKKFHQDSGFSYQVVNFAHHHGRNTEKVFFIGKTAEA
                     LVPIEHYIRDTYGDRVQMTYSALLCLEVMAKGVCKANALAELVKLRGYTLADCIAFGD
                     GMNDVEMLSLAGKGCLMGNADPRLKAVLPNNEVIGFNKDEAVASYLRATFGIV"
     gene            899..2062
                     /locus_tag="PXE92_000798"
     CDS             899..2062
                     /locus_tag="PXE92_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL5760068.1"
                     /translation="MKRKTLATLVLIAALGIGGYFYYQQQTNKPQIHYITQAVTRAEI
                     NKNVLATGSVRANKRTEVGAQVSGKIQKLYVELGQSVKQGDLIADIDSSNQSNTLSTA
                     QARLSSYKAQLTSAQVALEVAQSNYNRLNKLYRANSASLNDLETAKNTLASAKATVDN
                     IKAQLKSAEISVNDAKTNLTYTQIISPMDGVIVSVPVSVGQTVNSNQTSPTIVQVADL
                     SKMLIKLEISEGDIAQVKVGQKVKFSTLAEPNREYSATIDSVDPALTTLTDNNYTEQS
                     GNTEAVYYYANVSVDNADNSLRIGMTTQAQITIDKREQVLVVPTSVIKKRGKENYVLV
                     LENEQSVERKIQIGISDTQNTEVLAGLNEGDQVIVTQRADDEKISTARGPRMF"
     gene            complement(2175..3118)
                     /locus_tag="PXE92_000799"
                     /pseudo
     CDS             complement(2175..3118)
                     /locus_tag="PXE92_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251085.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
     gene            3266..4087
                     /locus_tag="PXE92_000800"
     CDS             3266..4087
                     /locus_tag="PXE92_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase, lipoprotein e(P4) family"
                     /protein_id="HDL5760069.1"
                     /translation="MKNIKLSAMSLTALFVLTACSHTHKNSDEHHQMVLQEQATLGIN
                     WMQQSGEYQALAHQAFNAAKVAFDQAKVKKGKKKAVVVDLDETMVDNSLYAGWQVKNH
                     KPFDGESWTRWVNARQTGAIAGAVEFNNYVNSHKGTMFYVSNRKDSSEKAGTIDDMNK
                     LGFSGVSEQTLLLKKDKSNKTPRFEEIEKQGYEIVLYIGDNLNDFGDATYRKSNAERR
                     AFVAENSQQFGKKFIMLPNPNYGDWEGGLDKDYYKGNAESRVKIRHNAIKAWDGK"
     gene            4226..5506
                     /gene="pepB"
                     /locus_tag="PXE92_000801"
     CDS             4226..5506
                     /gene="pepB"
                     /locus_tag="PXE92_000801"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HDL5760070.1"
                     /translation="MTAMKISLSTQNAPEIWGKNAILSANDAGFTVHNPNNDLATIQK
                     AARKIKNQGISTVELTGDSWDLESCWAFHQGFHSVKNQGSVQYPDLDEQQAEFDNRVK
                     CATFVRELINKPSDKLTPEKLAEQAVEFIQKMAKPNTVSYQIIRGEALQEQGYHGIWT
                     VGKGSANPPAFLVLDFNPTNDENAQVLACLVGKGITFDTGGYSLKPSDSMSTMRTDMG
                     GAALLTGSLAFAIARGLNKRVKLYLCCAENMVSHNAFKLGDIITYRNGVTVEVLNTDA
                     EGRLVLADGLIDACKQNPQFIIDAATLTGAAKVAVGNDYHSVLSMDDNLTEALFKSAK
                     TENEPFWRLPFEEFHRGQIASSFADIANIGSVPVGAGASTATAFLSYFVENYQQNWLH
                     IDASATFRKTASDLWAAGATGLGIRTVANLLLSK"
     gene            5557..6039
                     /gene="greB"
                     /locus_tag="PXE92_000802"
     CDS             5557..6039
                     /gene="greB"
                     /locus_tag="PXE92_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HDL5760071.1"
                     /translation="MAKSNYITRSGWQALDQELKFLWREERPKVTQAVSDAAALGDRS
                     ENAEYIYGKRRLRKIDRRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEEGEAK
                     QYRIVGCDEFDPAKNWISIDSPVARALIGKQVDDEIRVETPLGKVLLYINKIWYEQAS
                     "
     gene            complement(6081..9605)
                     /gene="recB"
                     /locus_tag="PXE92_000803"
     CDS             complement(6081..9605)
                     /gene="recB"
                     /locus_tag="PXE92_000803"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HDL5760072.1"
                     /translation="MKNLNPIQLPLNKSVLIEASAGTGKTFTIANLYLRLLLGIGCNP
                     LTVEQILVVTFTKAATEELKNRIRKNIQQCADFLKDQADGLEVESTKSYRNNLDFLAQ
                     IYPLIPNIHEALLRLSIAEREIDTASVFTIHGFCQKMLVQFAFESGVRFDLDLQPNQS
                     DLLKKLSEEVWREQFYPQDLAITYAVAEQLGTPEYALNAVRRYLSTELPEPNASLNQD
                     IAEHLAQYQQFINEVKSYWKTHSDELVETIRHDLKHKITLHGGWYRATTFEAGVEVMN
                     QWANSQHNHFPAGLYLFTTEKIAAGTKKSCEPIDSPHLAKNQAFLTAYKERFENSLSA
                     MLQYQFLIALKAKLAEYKQSHPQRSFDDLLTMLNQALKNLHTGEALSQKIRAMYPFAM
                     IDEFQDTDLTQYEIFSQIFMAENAENGFIMIGDPKQSIYKFRGADIFTYLRAAKQADE
                     QFTLGKNWRSLPEVVQAVNNLFSFANDNSPFLYEDIGFHPVEADSQKGQLVSEQGHFV
                     GYITENSKLDDLAEMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQA
                     KRIKKALAKRNIKSVYLAESASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWG
                     LTAAEIHRYKENEQLWDLKVNQFVEYSNIWKEQGVLPMLHKIYLEQGIIERLKGLENA
                     DRLITDLLHLTEILQETSQALESEAELLRWYEKQVNSPDFNDEQQLRLESEEELIKIV
                     TIHGSKGLQYPIVWLPFVSQKSEGDTQTALSLYRNSQGALDWCLGSEEASFSLQYEAY
                     AEDLRLLYVALTRAESQLNLVLPKEISGWSPLHYLLADGEIPTGKVPVSDYFSQKRIA
                     ANLVEVAGELPFSLWEGEQSSDDYQAKTFSGNIRVVGQITSFTSLYAQHERFSEGKSE
                     RVMDLAQDRDVHIETIEAGYSSETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQIDRE
                     AVAKVCEQLGLSEEWIEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYLRLKN
                     DKALHQLNALLKQHSPLAKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNFLG
                     YLPQNYAKEHIQREMGRQRYDLQYLLYTLALHRYLTARLGEKYDYERDFGGVAYLFLR
                     AMNGENDNGVYFDKPTKQLIEEMDRLFG"
     gene            complement(9664..11055)
                     /locus_tag="PXE92_000804"
     CDS             complement(9664..11055)
                     /locus_tag="PXE92_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDL5760073.1"
                     /translation="MNLRWQEYPENARKLFKLSLPIFISQLSASGMGLADIVMAGLVS
                     DDDVSAIAVSNSIYFPLFLFVSGLLNAITPTVSYLNGSSNRHLIANQVRQGYWIVFAM
                     SIPLMAIFLNSHLILDLMQTPAEFSIKSQQYLAVMAVGLIPALLAVSLRCMNDGLSNP
                     KPAMRITFFGLLLNIPLNYIFIFGKFGLPEMGAVGCGVATAIVNLIMFFMLLHYCYTN
                     SAQKDIRLFEKWIDAPSGQILLKLCKLGLPIAFAIFTEVMLFSTSSLFLSPLGSQVVA
                     SHQAALQTSSLFFMIPMSFGIATTIMIGQTLGQKNVEGAKILSYHALITATALAIIAA
                     IIIILLKNFIPFAFTNNPISIAITAHLLIFAAVYQIPDAIQAVANGILRGYKHTQPIL
                     YVTLFCYWGVSMPLGYILARTDWIVQPMAAQGFWLVFCIGLSLAGGLLLWQMRKIQAV
                     PKAQLIAKLERIK"
     gene            complement(11191..12285)
                     /locus_tag="PXE92_000805"
     CDS             complement(11191..12285)
                     /locus_tag="PXE92_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDL5760074.1"
                     /translation="MKKLAGLFAAGLATVALTACNEEKAAEPKATAAEAKPQATNQTV
                     HLYTWTEYVPEGLLDEFTKETGIKVEVSSLESNETMYAKLKLQGKDGGYDVIAPSNYF
                     VSKMAKEGMLAELDHAQLPVIKELNQDWLNKPYDQGNKYSLPQLLGAPGIAFNTADYK
                     GETFTSWGDLWKPEFAGKVQLLDDAREVFNIALLKLGKNPNTTNPDEIKEAFEELKKL
                     RPNVLSFTSDNPANSFIAGEVSVGQLWNGSVRIAKKENAPVDMVFPKEGPVLWVDTLA
                     IPANAKNKENAHKLINYLLSAKVAEKLTLAIGYPTSNVEALKVLPKEITEDTAIYPSA
                     EVLQKSQWQDDVGDAIELYEKYYQELKAAK"
     gene            12507..13103
                     /gene="grpE"
                     /locus_tag="PXE92_000806"
     CDS             12507..13103
                     /gene="grpE"
                     /locus_tag="PXE92_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDL5760075.1"
                     /translation="MTTQNEHLQEEVKQEEIQPEVVTEETQAEEQNTPQEEPLALAQA
                     RIAELEAYIAEADKREQDIQLRAQAEIQNIRRRAEQDVEKAHKFALEKFSKELLTVVD
                     NLERGLDALDKAVTDETTQALVDGVEMTHKEFINTLAKFGVVAIGEVGEAFNPELHEA
                     ISMQPAEGIEANHVSTVLQKGYTLHGRVIRPAMVMVAN"
     gene            13201..13470
                     /locus_tag="PXE92_000807"
     CDS             13201..13470
                     /locus_tag="PXE92_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760076.1"
                     /translation="MDAAMSLRFDKLRFVKRLQEANQTPEMAEAFANALDEALEQSQS
                     PLATKADLQLELEKLKNEINTTIFKAITLNITILGFLMAIMKFIN"
     gene            13533..13985
                     /locus_tag="PXE92_000808"
     CDS             13533..13985
                     /locus_tag="PXE92_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HDL5760077.1"
                     /translation="MTLQFNAVALLLVVLIILGLISQNSAVTISAAVLLIMQQTLLSK
                     FIPFVDQYGLKIGIIILTIGVLSPLVSGRITLPELAQLLNWKMALSIIAGVLVAWLGG
                     RGVNLMGSQPVLVTGLLIGTVIGVAFLKGVPVGPLIAAGILSLIVGKT"
     gene            14089..18075
                     /gene="hrpA"
                     /locus_tag="PXE92_000809"
     CDS             14089..18075
                     /gene="hrpA"
                     /locus_tag="PXE92_000809"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HDL5760078.1"
                     /translation="METPLQKNHKKPPLVKLENITTADFRRLLGRLKGAENIKNIDHK
                     RSVLAEISQDLTACQARFFARTQHAQNLKIDYPDLPVSARREEILKLISENQVVVIAG
                     ETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAARSVATRIAEELKSELGETVGYKV
                     RFNDQVSENSLIKLMTDGILLAEIQHDSYLNQYDTLIIDEAHERSLNNDFILGYLKQI
                     LHKRPDLKVIITSATIDVERFSKHFNNAPIIEVSGRTFPVEVRYRPIVEDQDQLQGIL
                     NAVDELQAEGRGDILIFMNGEREIRDTAEALQKQELRHSEILPLYARLSAAEQQRIFQ
                     PSGGLNRIILATNVAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASAN
                     QRKGRCGRTSEGICIRLYSEEDFNSRPQFTDPEILRTNLAAVILQMTSLGLSDIANFP
                     FVDAPDSRQIQDGIRLLEELQAIIPNEKIPSTACGGGLGRGEIRSNDGTPPLPTSPRK
                     RGDGFRLTPIGRQLAQLPVDPRLGRMVIEAAKNGSLHEVMMIVSALSIQDPRERPQEK
                     QQSADDKHRRFADKESDFLAFVNLWHFIQAQQKELSKNQFRNLCRKDYLNYNRVREWQ
                     DIYHQLRLAVREMGLKINSEPASYQPIHTALLAGLLSHIGLKDNEKMHYLGARNAHFF
                     IFPNSALFKKQPKWVMAAELVETTKLWGRMVARIEPEWVEPLAVHLTKSSYSEPHWAK
                     SKGAVMASEKVSLYGIPIVAQRSVNYGSIDPTVSREIFIRSALVEGECHNNYKFFKEN
                     HRLIREVEALEHKSRRRDILVDEQVLFEFYDQRIGTEVVSSKHFDTWWKQASKKDPEL
                     LNFEKSFLINDNANLASELDFPNFWHQGDLKLKLSYQFEVGKDHDGVTVHIPLPLLNQ
                     VEPEGFDWQIPGLRHELIVSLIKSLPKSLRRNFVPAPNYADAFLGRAEPFKKPLLDNL
                     SHELRRMTGVLVEPEQWDLSQLPPHLRMTFRVIDDKGKKLQESENLDELKFALKDEVQ
                     NTLSNIADDGIEQSGVHIWNFAELPQFYEQKKAHFSVKAYPAIVDEQTAVGVKLFETE
                     FEQARAMQAGLRRLLLLNVPSPIKYLHEKLPNKAKLGLYFAPFGKVLELIDDCIACAV
                     DQLVEEFGGFVWTEEKFTQLHEFVRANLNDKTVEIAKQVEKCLTLAYELNKRLKGKLD
                     FTMAFALSDIKTQIEGLIYPDFVTKTGYARLADLYRYLTAIERRLDKLLVDSNTDRAK
                     MLRVEAVQEAYKQLLAKLPKSKAVPDEVLEIRYMIEELRVSLFAQQLGTKYPISDKRI
                     LNVINEIK"
     gene            18324..21128
                     /locus_tag="PXE92_000810"
     CDS             18324..21128
                     /locus_tag="PXE92_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL5760079.1"
                     /translation="MYKIKHSFNKTLIAISISSFLSIAYATESIENPQPIIQLSESLS
                     SKYSGKGVKLGVMDEGFMVKHPRHSSHLHPLIHQLTTPEGEVRIYDASYPQFEVNPVE
                     KEDGIDLIPSLETHGAGVAGIIAAQADKTLGDGYSGGIAKGAELYVATKSYKRTLEKV
                     IQDAKKELENAKDEEDEKTPSLDQMAKNDLLASKEKEMAIERAEWASGLNKLLDNNVF
                     AINNSWNPFSISDDINVVDKFYQSIKQNKHNPLLQAIMRAKNSNTLLVFAAGNESKKQ
                     PGVMALLPRYFPELEKNLISAVAVDKEQKIASYSNHCGASKNWCVAAPGDLHVLIGVA
                     DEHKKPQYGLTKEQGTSFSAPAITASLAVLKERFDYLTATQIRDTLLTTATDLGEKGV
                     DNVYGWGLINLKKAVNGPTQFLNDETITVTRDDHWSNPLASQFKITKKGDKSLHLDGE
                     NHLDTVAVEEGRLALNGKTKVKTISNHANLAVNGTEVEQNYSSSGQSQLEVLGKSGLI
                     ANAQANIHLAGSLKIDDKLTEKTEAGDVSATVVQLKDKATYQGGFTQLVENENLAKRG
                     LIQDLYFKESEIIAKVNKPLTDEKADTNGQAGLALLNALRTTPIAYRRSWYNGWLQSA
                     LEQRKLDNLHYAVSNNIYADSLELLRSQNAKGLTQAQQHLFTAYHTPLQTTVWAEHLN
                     QKQSASSKHTDVKHHQSQLGVNHKLADKTVLSATLSQQKNRLEKPFAQATLKQTALNI
                     GLRYHLDNAWFSEATLQFARQKYQQSRRFASHQLGTAETRGSTLGGEMRIGYQFMPNQ
                     WIIEPSLGVQWIQTKMNGLNESGELATQTAAMRYRDVNIVPSVKLQRTFQLEQGSISP
                     YIGLNYLHRLNGKITKITSNIAGKTLHSEATTKRNRQLNGEVGVKLHYKNWFTAMNLD
                     YSRVKSANLFGWKVNVGFSF"
     gene            complement(21269..21706)
                     /locus_tag="PXE92_000811"
     CDS             complement(21269..21706)
                     /locus_tag="PXE92_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HDL5760080.1"
                     /translation="MDWFFNWIGWSILGFVLLALELVLPGVFIMWWGFASLILAFIVA
                     LFTLGQALQIALFAIIATIFSLIWWKYQHGKDKKEDQSSSLNSREHAMLGAQGFVVEI
                     LPNGIARGKFGDTTWRVIGNNLQVADKIEVQKVEGITLFVRKQ"
     gene            complement(21742..22662)
                     /locus_tag="PXE92_000812"
     CDS             complement(21742..22662)
                     /locus_tag="PXE92_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HDL5760081.1"
                     /translation="MNFDLPIVSIAFVVLVLVALSSTIKIVPQGYHWTVERFGRYTKT
                     LSPGLNIVVPFIDRIGRKMNMMEQVLDIPSQEVISRDNASVAIDAVCFVQTVDARRAA
                     YEVNHLEQAIVNLTMTNMRTVLGSMDLDDMLSQRDLINGRLLSIVDEATNIWGVKVTR
                     IEIRDVRPPKELVAAMNAQMKAERNKRADILEAEGIRQAEILRAEGEKQSRILKAEGE
                     RQEAFLQAEARERAAEAEAKATQMVSEAIAKGDTTAINYFIAQKYTEALKEIGSSDNS
                     KVVLMPLEAGNLIGSVAGIAEILKSNKTSS"
     gene            complement(22678..23367)
                     /gene="ung"
                     /locus_tag="PXE92_000813"
     CDS             complement(22678..23367)
                     /gene="ung"
                     /locus_tag="PXE92_000813"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDL5760082.1"
                     /translation="MKTWTEALGEEKQKAYFQQILQYVHNERLAGKVIYPPQNEVFSA
                     FALTEFSDVKVVILGQDPYHGPNQAHGLAFSVKPPVAPPPSLVNMYKELSEDIEGFQI
                     PPHGYLIDWAKQGVFMLNTSLTVEQGRAGSHSQIGWEIFTDKVIAQLNQHRDNLVFLL
                     WGSHAQRKGQFIDRNRHCVLASPHPSPLSAYRGFFGCKHFSKANNYLISQGISPINWQ
                     LSVDVSYSSTH"
BASE COUNT         7291 a         5004 c         4767 g         6418 t
ORIGIN      
        1 attgttagga atagattatg actctcccat ttcgtgcaat tatttccgat cttgatggca
       61 cactattaaa tgccaatcat aaaattggtg atttcactat tgatacatta gaacaactat
      121 caaaaaaagg tgttgatatt tttttcgcca ccggtcgcaa tcatccagat gtgtctcaga
      181 ttattgggaa agtaaacgtt aaaaatgcaa tgttagtcac ttcaaacggg gcaagagcca
      241 acaatttaga gggtaaaaaa attctcaacc attatttacc ggaagatctt gcctttgaat
      301 taatgaacat tgaatttgac gaccaaaatg tgtgcttaaa cagctatcaa ggcgatgaat
      361 ggtttatcaa taaagagatt gcagagttaa aaaaattcca tcaagattca ggatttagct
      421 atcaagtagt aaattttgct catcatcacg gtcgaaatac cgagaaagtg ttttttatcg
      481 gcaaaactgc tgaagcttta gtaccgattg aacattatat tcgggatacc tatggcgacc
      541 gtgtgcaaat gacctactct gccctacttt gccttgaagt gatggcaaaa ggagtgtgta
      601 aagccaatgc tctcgccgaa ttggtcaaat tacggggcta caccttagcc gattgtatcg
      661 cttttggtga cggtatgaat gatgtggaaa tgctaagttt agccggcaaa ggttgtttaa
      721 tgggtaatgc cgatccacgt ttaaaagccg tattaccgaa taatgaagtg attggcttta
      781 acaaagatga agcggtggca agctatcttc gagccacatt tggcattgtt tagttgagag
      841 caactttttt gcaaattttt gtctaaattt gaccgcttgt atatcatcaa ggaacagtat
      901 gaaacgtaaa acattagcca ctcttgtgct aattgccgct ctcggaatag gcggctattt
      961 ttattatcag caacaaacca ataaaccgca aatccattac attacccaag ctgtcacacg
     1021 ggcagaaatt aacaaaaatg tgctggcaac cggttcggtt cgagcgaata aacgcaccga
     1081 agtgggggct caagtttcgg gcaaaatcca aaaactctat gtcgagctcg ggcaatcggt
     1141 gaagcaagga gatttaattg cagatattga ttccagcaac cagagcaaca ccttaagcac
     1201 cgctcaagcc cggctttctt cttataaagc acagctcacc tctgcacagg ttgcacttga
     1261 agtagctcaa tcgaactaca accgcttaaa taaactctat cgggcaaata gtgcctcttt
     1321 aaacgatctt gaaacggcta aaaatacctt agcttcagcc aaagccacgg tggataacat
     1381 taaagcacaa ttaaaatcgg ctgaaatttc ggtaaacgat gctaaaacca acttaactta
     1441 tacgcaaatt atctcgccaa tggacggcgt gattgtgtct gtaccggttt ctgtcgggca
     1501 aacggtcaat tccaatcaaa cttcgccaac tattgtacag gtagcagatt tatctaagat
     1561 gctgattaaa cttgaaattt cggagggcga tattgcacag gttaaagtcg ggcaaaaagt
     1621 taagttttcc acccttgctg agccaaatcg agaatatagt gctaccattg attcagttga
     1681 tccggcactc accacgctga ccgataataa ctacaccgaa caatcgggta ataccgaagc
     1741 ggtttattac tacgctaatg tttccgttga taatgccgat aacagtttac gcatcggaat
     1801 gactactcaa gcccaaatta ctattgataa acgggaacag gttttagttg tacccaccag
     1861 cgtaatcaaa aaacgtggta aagagaatta tgtgttggtg ctggaaaatg agcagtcggt
     1921 tgaaagaaaa atccaaattg gcatttcgga tacgcaaaat accgaagtat tagcaggctt
     1981 aaatgagggt gatcaagtga ttgttaccca aagagcggat gatgaaaaaa tcagcactgc
     2041 acgtggacca agaatgttct aaattctaaa caacaagcgg ttaaattttc tgaacatttt
     2101 gcaaaaaatt agaaaaattt aaccgtttgt ctattcttta ttaaaacatt aaaacgtctg
     2161 tattaaaacg aattttattt ttcgttatcg tttttcattt tagcgaaaat catcgccaaa
     2221 atcgggcctg aaatattgtg ccagaagcta aataccgcac ttggcaccgc aatgataggg
     2281 ttggctttaa agtgtaatgc ggcaagtgct gcccccaatc ctgagttttg catccccact
     2341 tcaatcgcca ccgctttgct gtctgcaatc ggtaatttta ataaacggct cgccaaataa
     2401 ccgattaaat aacctaaacc gttgtgtaat gctactaccg caaaaattaa taaaccggat
     2461 tcaataatac gatctcggct aactgacacc accgccgtga caattaatac gattgcaatc
     2521 actgaaatta atggcattgt ttggctaaat tgctctactt tttgtttgaa aatagtacga
     2581 atcaccacgc ccacaaaaat tggcaatagc accatttgca acaccgaaat aaacattgcc
     2641 gttgcattaa tttctaacca ttggctggca aataaataga aaattgccgg cgtgagcact
     2701 ggggcaagta aagttgaaat agtggtacaa gctaccgata acgctgtgtt gccacgagcc
     2761 aaataggtca tcacgtttga agaagtaccg cccgggcaac aaccaactaa aatcacacca
     2821 atggctaaat ctgcgggtaa gttaaatgct tttgccaatc cataagctac actcggcata
     2881 ccacgaattg agcgatcacg ccgataatca ctgatttcgg atttttcgtt acctcggcaa
     2941 aatctttgaa agttaaggtt aaccccattc ccaacatcac aatccctaac agataaggaa
     3001 tccaaggcag gaattgctta aaggtttccg gaaattgtgc tgcgataaaa gcaaaaaaca
     3061 ccacccaaat ggcgaaggtt ttgctgataa attgtgtaaa ttttaataat gtttgcatat
     3121 agcctctgtg taattgttat aaaaaggtta ctaggctacc ttagtttgct ttaaaagtga
     3181 ataggagcaa taaactatta gccataagca actcttttta ggtataatcg ctctgtttat
     3241 caacaataaa actaaggata tacgtatgaa aaacatcaaa ctttctgcta tgagcctcac
     3301 agctttattt gtattaactg cttgttcgca cacgcataaa aacagcgatg agcatcatca
     3361 aatggtgttg caagagcaag ctacattagg gataaactgg atgcaacaat ccggcgaata
     3421 ccaagctctt gcccatcaag cattcaatgc agcgaaagtg gcattcgacc aagccaaagt
     3481 gaaaaaaggc aagaaaaaag ccgtggtagt agatttagat gaaactatgg tggacaacag
     3541 cctttatgcc ggctggcagg ttaaaaacca caagccgttt gatggtgaaa gctggactcg
     3601 ttgggtaaat gcccgccaaa ccggagcgat tgccggtgca gtggaattta acaactacgt
     3661 taatagccac aaaggaacta tgttctatgt ttcaaaccgt aaagacagca gtgaaaaagc
     3721 cggtactatt gatgatatga acaaattagg ctttagtggt gtgagcgaac aaacactctt
     3781 gttgaaaaaa gacaaatcga acaaaacccc tcgctttgaa gaaatcgaaa aacaaggcta
     3841 tgaaatcgtg ctctatattg gcgacaactt aaacgatttc ggcgatgcga cttaccgtaa
     3901 atcaaacgcg gaacgccgtg cattcgtagc cgaaaacagc caacaattcg gtaaaaaatt
     3961 cattatgtta ccgaacccga actatggcga ctgggaaggc ggtttagata aagattacta
     4021 caaaggcaat gctgaaagcc gtgttaaaat ccgccacaat gcaattaaag cttgggacgg
     4081 caaataatcc gtccttaatc aggttgtaaa aacacgaaac aatgaccgct tgtcaaggct
     4141 atgctctgca agcggtcatt tttgtataaa actttgcaaa agtttgttag gataaagcaa
     4201 aatccatttt ctaaggaaac cgataatgac agcaatgaaa atttcacttt ctactcaaaa
     4261 cgcccctgaa atttggggta aaaatgctat tctttccgca aatgatgcgg ggtttaccgt
     4321 acataatccg aacaacgatt tagccactat tcaaaaagcc gcccgcaaaa ttaaaaatca
     4381 aggtatttca accgtggagc tgaccggcga tagttgggat ttagaatcct gctgggcgtt
     4441 tcatcaagga tttcattcgg taaaaaatca aggctcggta caatacccag acttagacga
     4501 acagcaagcc gaatttgata accgtgtaaa atgtgccact ttcgtgcgtg aattaattaa
     4561 taagccatca gataaattaa cccctgaaaa attagccgaa caagcggtcg agtttatcca
     4621 aaaaatggca aaaccgaata cggtttctta ccagatcatt cgtggcgaag cattacaaga
     4681 acaaggctat cacggcattt ggacagttgg aaaaggctct gccaatccgc ctgcattctt
     4741 agtattagac ttcaacccaa ccaacgatga aaacgcacag gtactggctt gcttggtcgg
     4801 caaaggcatt acctttgaca ccggcggtta tagtctaaaa ccaagcgata gtatgagcac
     4861 aatgcgaacc gatatgggcg gagcggcact tttaaccggc tcacttgctt ttgccattgc
     4921 tcgaggcttg aataaacgag tgaaactcta cctctgctgt gcggaaaata tggtcagcca
     4981 caatgcgttc aaattaggcg atattatcac ttaccgcaat ggcgtaactg ttgaagtttt
     5041 aaacaccgat gctgaagggc gtttagtgct tgccgatggt ttaattgatg cgtgcaagca
     5101 aaatccacaa tttattattg atgctgcaac cctcacagga gcagcaaaag tcgcagtcgg
     5161 caatgactac cactcggtgc tttcaatgga cgacaaccta accgaagcac tatttaagtc
     5221 tgccaaaacg gaaaatgaac cgttctggcg tttaccgttt gaagaatttc accgtgggca
     5281 aattgcttct tcctttgcag acatcgccaa tatcggctct gtgccggtgg gggctggggc
     5341 aagtaccgcc accgcatttt tatcttactt tgtagaaaac taccagcaaa actggctaca
     5401 tattgacgcc tctgccacat tccgcaaaac ggcgagcgat ttatgggcgg caggagcaac
     5461 cggactggga ataagaacag tagcgaattt attgctttca aaatagaaac ttcgtagggg
     5521 caaatcacta tttgctccat aaacaattaa ataactatgg ctaaatcaaa ttacattacc
     5581 cgttcaggct ggcaagcctt agatcaggaa ttaaaatttc tatggcggga agaacgcccg
     5641 aaagtgactc aagcggtgtc tgatgctgcc gcattgggtg atcgaagcga aaatgccgaa
     5701 tatatttacg gcaaacgccg tttgagaaaa atcgaccgcc gtgtgcgttt tttatctaag
     5761 cggctagagg tgctacaaat tgttgattat caccctaaac aagaaggcaa agtctttttc
     5821 ggcgcttggg tggaattaga aaatgaagag ggcgaggcaa aacagtaccg tattgttggt
     5881 tgcgatgagt tcgacccagc aaaaaactgg atttcgattg actcccctgt cgcccgagcc
     5941 ttaatcggca aacaggttga tgatgaaatt agggtagaaa ctccgcttgg taaagtgttg
     6001 ctttatatca ataagatttg gtatgagcaa gcgagttaat tacccataaa ggggcgaaaa
     6061 attttcgccc ctacacatat ttacccaaac aaccgatcca tttcttcaat caactgctta
     6121 gtcggcttgt caaaataaac gccgttatca ttttcgccgt tcattgccct taagaacaag
     6181 taagccactc cgccgaagtc tcgttcataa tcgtattttt cacctaaacg ggcagttaga
     6241 taacggtgta aggcgagagt gtaaagcaga tattgcaaat catagcgttg tctgcccatt
     6301 tcccgttgaa tgtgttcttt cgcataattt tgtggcagat agcctaagaa attcgatttg
     6361 taatcaatta agtagaattt ctcctccact tgcacgatac aatctacaaa gcctcgcaca
     6421 aaaccttcta attgcggtaa ttgcaattca ggtaaagttt ttgctaaagg gctatgttgc
     6481 tttaataacg catttaattg atgtaaggct ttatcatttt ttaagcgtaa atagaattgc
     6541 cactcgttta atcgtttggt ttcatcaatc gcttttaagc agaaatttgc ctctgccaaa
     6601 ggggtagtta gaatacgctc aaaccataat gctgttggtt caatccattc ctcgcttagc
     6661 cctaattgct cgcatacttt agcaacagcc tctctatcaa tttgttcgtt aaattggcaa
     6721 tgctcaaaaa agtgatgtaa caccgtgccc actttaatac cgtgtgggaa ttggaatggc
     6781 gagaaagcgg cagtttcact tgaataacct gcctcaatgg tttctatatg tacatctcga
     6841 tcttgggcta aatccattac cctttctgat ttcccttcac taaaacgctc gtgttgggca
     6901 taaagtgaag taaagctggt aatttgacca accacacgga tattgccact aaaggttttt
     6961 gcttggtaat cgtctgaaga ttgttctcct tcccacagtg agaaaggtaa ttccccggct
     7021 acttcaacca aattagcagc aatccgtttt tggctaaaat aatctgaaac aggcactttt
     7081 cctgtaggta tttccccgtc tgctaacaag taatggagtg gagaccagcc ggaaatctct
     7141 ttcggcaaca ctaagttaag ctgagattcc gcgcgggtta atgccacata cagcaaacgt
     7201 aaatcttccg cataagcctc atactgtagc gaaaaacttg cctcttctga gcctaaacac
     7261 caatccagcg caccttgaga attgcgatat aaacttaatg ctgtctgcgt gtctccctca
     7321 cttttttgtg aaacaaaagg taaccaaaca attggatatt gcaagccttt cgagccgtga
     7381 atcgtcacaa ttttgattag ctcctcttca ctttccaacc gaagttgttg ctcgtcatta
     7441 aaatcgggcg aattaacttg cttttcatac caccgcaaca gttcagcttc agactctaac
     7501 gcttgcgagg tttcctgcaa aatttcggtt aaatgcaata aatccgtaat caagcgatcc
     7561 gcattttcca aacctttcaa acgttcgata atgccctgct ccaagtagat tttatgcaac
     7621 atcggcagaa cgccctgctc tttccaaatg ttgctgtatt ccacaaactg attgactttc
     7681 agatcccaaa gttgctcatt ttccttatag cggtggatct ctgccgccgt taagccccac
     7741 aaggttgagc ctaacgccga taataatgcc ttgtaatgat acggattcag tgcggcttgc
     7801 aataaccaac acaattctgt tgcaatttcc gaaccaaata cagaagctga ttcagctaaa
     7861 tagacggatt tgatattacg ttttgccaac gcctttttga ttcgcttagc ttgtgaacct
     7921 tttcggacta aaatcgcaat atcttttgca gcaaaggatt gaaattcgcc gtttttttca
     7981 actccgaatt tgccttgagc catcgcctca agctgttgat gaatttgata agcacacatt
     8041 tcagccaaat catctaattt actgttttcc gtgatgtagc ctacaaaatg cccttgctca
     8101 ctaactaact gacctttttg gctatcagcc tccactgggt gaaagccaat atcctcataa
     8161 agaaacggag agttatcatt tgcaaaagaa aacaaattat tgaccgcttg caccacttca
     8221 ggcaacgaac gccagttttt gcccaatgtg aattgttcat cagcctgctt tgctgctcgc
     8281 aaatacgtga aaatatccgc cccacggaat ttatagatcg actgtttcgg gtcgccaatc
     8341 ataataaagc cgttctctgc attctctgcc ataaaaattt ggctgaaaat ttcatattgg
     8401 gttaaatcgg tatcttggaa ctcatcgatc atcgcaaaag gatacatcgc ccgaattttc
     8461 tgagacaagg cttcgcccgt gtgtagattt ttcaacgctt ggtttagcat tgtgagtaaa
     8521 tcatcaaaac tgcgttgtgg gtgcgattgt ttgtactctg ccaattttgc tttgagagca
     8581 attaaaaatt gatactgcaa cattgctgac aagctgtttt caaaacgttc cttgtaagcg
     8641 gtcaaaaaag cctgattttt tgcaagatga ggggaatcta tcggctcaca gctctttttc
     8701 gtgccagccg caattttctc tgtagtgaat aaataaagcc ctgccgggaa atggttatgt
     8761 tgcgaattag cccactggtt catcacttcc acaccggctt caaaagtggt cgctcgatac
     8821 caacctccgt gcagcgtaat tttatgcttt aaatcgtggc ggatagtttc aaccagttca
     8881 tctgaatgcg ttttccaata ggatttcacc tcattaataa actgctgata ttgagccaaa
     8941 tgctcggcaa tatcttgatt taaagaggca tttggttcag gtaattcagt agataaataa
     9001 cgccttaccg cattgagggc atattccggc gtaccaagtt gttcggcaac cgcataagtg
     9061 atggctaaat cttgcggata gaattgctct cgccagactt cttcacttaa ttttttaagt
     9121 agatcacttt ggtttggctg taaatccaag tcaaaccgca cgcccgactc aaacgcaaac
     9181 tgaaccagca ttttttgaca aaagccgtga atggtaaaca cgctggcggt atcaatttcc
     9241 cgttcggcaa tacttaaacg taacaatgct tcgtgaatat tcggaatgag cggataaatc
     9301 tgtgccaaaa aatcaaggtt gtttcgatag gattttgtac tttccacttc caaaccatca
     9361 gcttgatctt ttaaaaagtc ggcacattgc tgaatatttt tacggatacg gtttttcaac
     9421 tcttcggttg ctgctttggt aaatgtcacc accaaaattt gttccaccgt taacgggttg
     9481 caaccaatgc cgagcaataa acgcaaatac aggttggcaa tggtaaaggt tttccctgta
     9541 cctgccgacg cttcgattaa aacggattta ttcaaaggta gttggatagg atttaggttt
     9601 ttcatcagca aagttatctt ctaaaagtaa aaagcactgc tatgttccat agcagagaat
     9661 ctgttattta atccgttcta attttgcaat taattgtgct tttggcaccg cttgtatttt
     9721 tcgcatttgc cataataaca agccaccagc caaacttaag ccgatacaaa agactaacca
     9781 aaaaccttga gcagccattg gttgtacaat ccaatcggtt cttgccaaaa tgtagcccag
     9841 cggcatactc accccccaat aacaaaacag agtaacgtat aaaatcggtt gggtatgttt
     9901 ataaccacgc agaatgccgt ttgctaccgc ttgaatggca tccggtattt gataaaccgc
     9961 cgcaaaaatc aataaatgag cggtaatcgc aatcgaaatc gggttgttgg taaacgcaaa
    10021 agggataaaa tttttcaaca aaataataat gatggcggca ataatagcta aagcggttgc
    10081 ggtaatcagt gcgtggtaac ttaagatttt cgccccctcc acatttttct gcccaagtgt
    10141 ttgtccgatc ataatggtgg ttgcaatgcc aaacgacatc ggaatcataa aaaatagcga
    10201 gctggtttgc aatgcagctt ggtggctagc caccacctgt gaaccaagtg gtgacagaaa
    10261 cagcgatgag gtcgaaaaca gcatcacttc ggtaaaaatc gcaaaggcaa tcggcagccc
    10321 taatttgcaa agttttagca aaatttgacc gcttggagca tcaatccatt tctcaaacaa
    10381 acgaatatct ttttgggcag aattggtgta gcaataatgc aacaacataa aaaacataat
    10441 caagttcaca attgcggttg ctacaccaca gcctaccgct cccatttcag gcaagccaaa
    10501 tttgccgaaa atgaaaatat agtttagcgg aatgttcagc aataaaccga aaaaggtaat
    10561 ccgcatcgca ggtttagggt tagataatcc atcgttcata caacgtaaac tcaccgccag
    10621 caaagcagga ataagcccaa ctgccattac tgctaaatat tgttgcgatt tgattgaaaa
    10681 ctcagccggt gtttgcatta agtctaaaat cagatggctg tttaggaaaa ttgccattaa
    10741 tggaatagac attgcaaaca caatccaata gccctgcctt acttggttag caattaaatg
    10801 gcgattgctc gagccgttta agtaagaaac ggttggggta attgcattca gcaaccctga
    10861 cacaaacaga aagagcggaa agtaaatcga attacttacc gcaatcgccg agacatcatc
    10921 atcactcacc aagccagcca ttacaatatc cgccagcccc attccggaag ctgaaagctg
    10981 agaaataaaa atgggtaggg atagtttaaa taatttgcgg gcattttcag gatattcttg
    11041 ccatcttaag ttcatggttt aatctctcaa aatctaagta tgtttttatg attgtacctt
    11101 agaaagcggt cgtttttgcc aaattttttg caactcaaaa gagaaagcct ctaaagattg
    11161 ctccctagag gcttcagaat taatcagcta ttattttgct gcttttaact cttggtagta
    11221 tttttcgtaa agctcaattg catcaccaac atcatcttgc cattgagatt tttgtaaaac
    11281 ctctgcagat gggtaaattg ctgtatcttc agtaatttct ttcggtaata cttttaatgc
    11341 ttctacgttt gaagttgggt aaccaatcgc taacgttaat ttttcagcta cttttgcact
    11401 taataagtag ttgattaatt tatgtgcatt ttctttgttt ttcgcatttg ccggaatggc
    11461 taaagtatcg acccaaagca caggaccttc tttcgggaat accatatcaa ccggtgcgtt
    11521 ttctttcttc gcaatacgta cagaaccgtt ccataactga cctacagaaa cctcaccagc
    11581 aataaatgag tttgccgggt tatcagaggt aaatgaaagc acatttggac gtaatttttt
    11641 caactcttca aaggcttctt tgatttcatc cggattagtt gtatttgggt ttttacctaa
    11701 ttttaataac gcaatgttga atacttcacg agcatcatct aataattgta ctttacctgc
    11761 aaattcaggt ttccacaaat caccccaaga agtgaatgtt tcacctttgt aatctgccgt
    11821 attaaatgca atacccggcg cacctaataa ttgaggtaat gaatatttgt ttccttgatc
    11881 gtaaggttta tttaaccaat cttggtttaa ttctttaata accggaagtt gtgcgtgatc
    11941 taattccgct aacattcctt ctttcgccat tttagataca aagtagtttg atggagcaat
    12001 tacatcataa ccgccatctt tgccttgtaa ttttaattta gcgtacattg tttcgttaga
    12061 ttcaagactt gaaacttcaa ctttaatgcc ggtttctttc gtaaattcat ctaacaaacc
    12121 ttcaggcaca tattcagtcc aagtataaag gtgaactgtt tgatttgttg cttgaggttt
    12181 tgcttcagcc gcagttgctt ttggctctgc cgctttttct tcattacacg ctgttaatgc
    12241 aactgttgct aaacctgctg caaataaacc cgctaatttt ttcatttaag ttttctccgt
    12301 taaagaaaag tgattaaaaa atatagcctt gcctaagggc ggaaaagact agggcatttt
    12361 aagccccccc ccgtattttg caagcctttt ctgattaaaa agtgaattat tttcgcaaaa
    12421 agaaagagat atgcttgaaa tcccttaatt tatcgctata ttaaggaaga tttacatttc
    12481 cagattagtc ttttaaagga taaaaaatga ccactcaaaa tgaacactta caagaagaag
    12541 taaaacaaga agaaattcaa cctgaagttg taactgaaga aactcaagcg gaagaacaaa
    12601 atacacctca agaagaaccg ttagctctcg ctcaagctcg aattgccgag ttagaagcct
    12661 atattgcaga agccgacaaa cgtgagcaag atattcagct tagggctcaa gcagaaattc
    12721 aaaatatccg ccgccgtgca gagcaagatg ttgaaaaagc tcacaaattc gctttagaaa
    12781 aattctccaa agaattgtta acagtggttg ataaccttga acgtggatta gatgcccttg
    12841 ataaagccgt gaccgatgaa accactcaag cgttagttga cggcgttgaa atgactcata
    12901 aagaattcat caatacactg gctaaatttg gtgtggtggc aattggcgaa gtaggcgagg
    12961 catttaaccc tgaattgcac gaagctattt caatgcaacc tgccgaagga attgaagcca
    13021 accatgtcag cacagtgcta caaaaaggct acacgcttca cggacgagtg attcgcccgg
    13081 caatggtgat ggtggcaaac taaattgtcg attttcgacg aagatcacaa aatctcctaa
    13141 aattcctgct tgtgattatg ctaaattagt ttataactta accacaagag gataattgaa
    13201 atggatgcag ctatgagcct acgatttgac aaattacgtt ttgtaaaacg cttgcaagaa
    13261 gccaatcaaa cacctgaaat ggctgaggca tttgctaatg ctctcgatga agccttagag
    13321 caaagtcaaa gcccactagc aacaaaagct gatttgcaac ttgaacttga aaagctaaaa
    13381 aatgaaatca ataccacgat atttaaagca attaccttaa atatcacaat tcttggcttt
    13441 ttaatggcaa taatgaaatt tattaactag ctcaacgttt aattaaccac tcccttactt
    13501 ctatgaagta agggttttta cgttttaatc ctatgacttt acaatttaac gcagtggcac
    13561 ttctacttgt ggtgctgatt attttagggc tgatcagcca aaacagtgcg gttactattt
    13621 cagccgccgt attgctgatt atgcaacaaa ccttactttc taaatttatc ccctttgtcg
    13681 atcaatacgg cttaaaaatc gggattatca ttttaaccat cggcgtactt agccccttgg
    13741 tttcagggcg aattacgctt cccgaacttg cccaactatt gaactggaaa atggcactct
    13801 caataattgc tggcgtgctg gtagcgtggc taggtggcag gggcgtgaat ttaatgggca
    13861 gccagccggt gttggtaact gggcttttaa tcggcacggt gatcggcgtg gcgttcttaa
    13921 aaggcgtacc ggtcgggccg ttgattgcgg cagggatttt gtcactgatt gttggtaaaa
    13981 cctaatgtag ggtggacgta agtccacgca taaaatccct attctgttac gtgggcttac
    14041 gcccacccta caataaatca caaggtctta atgcaaaaga gaaattaaat ggaaacacct
    14101 ttgcaaaaaa atcataagaa accaccgctt gtgaagctgg aaaatatcac caccgccgat
    14161 ttccgccgcc tgctcggtcg cttaaaaggg gcggaaaata ttaaaaacat cgatcacaag
    14221 cggtcagttt tggcagaaat ttcgcaagat ctcaccgctt gtcaggcacg ttttttcgca
    14281 cgaactcagc acgcccaaaa cctgaaaatt gactaccctg atctgcctgt ttccgctcgc
    14341 cgtgaggaaa ttttaaaact gattagcgaa aatcaggtgg tggtgatcgc aggggaaacc
    14401 ggttcgggca aaaccaccca gttaccgaaa atgtgcttag aactcgggcg tggggtgaag
    14461 ggcttgattg ggcataccca gccccgccga attgccgcac gttcggtggc gactcgcatt
    14521 gccgaagagc tgaaatcgga actgggcgag acggtcggtt acaaagtccg ctttaacgat
    14581 caagtcagtg aaaacagctt aatcaagcta atgacggacg gtattctgct ggcggaaatc
    14641 cagcacgaca gctatttaaa tcagtacgat acgctgatta ttgacgaagc tcacgagcgt
    14701 tcgctgaaca acgattttat tttgggttat ctgaaacaaa ttctgcacaa acgccccgat
    14761 ctgaaagtga tcatcacctc ggcaactatt gatgtagaac gtttttccaa acatttcaac
    14821 aacgccccga ttattgaagt ctctggtcgg acattcccgg tggaagtgcg ttatcgcccg
    14881 atagtggaag atcaagatca actgcaaggt attctaaatg cggtggacga actgcaagcc
    14941 gaagggcgtg gcgatattct gatttttatg aacggtgaac gggaaattcg tgacactgcc
    15001 gaagccttgc aaaagcagga actgcgacat agcgaaattt taccccttta cgcccgctta
    15061 tcggctgccg aacaacaacg gattttccag ccaagcggtg ggctaaaccg aattattctg
    15121 gcgaccaacg tggcagaaac ctccctcact attccgaata ttaaatatgt gatcgacacc
    15181 ggcacggctc gtatttctcg ttatagctac cgcaccaaag tgcaacgctt gccgattgag
    15241 ccgatttcgc aagcctccgc caaccagcgg aaagggcgtt gtgggcgaac ctcggaaggg
    15301 atctgtatcc gcctctattc agaagaggat ttcaacagcc gtccacaatt taccgatcct
    15361 gaaattctac gaactaacct tgcagcggtt attttacaaa tgacttcgct tggattgagt
    15421 gatattgcca atttcccgtt tgttgatgcc cctgacagcc gacaaattca ggacgggatt
    15481 cggttgttgg aagaattaca ggcgattatt ccaaatgaaa aaatcccctc caccgcttgc
    15541 gggggagggc tagggagggg ggaaatccgt tctaatgatg gcactccccc cctcccaacc
    15601 tccccccgta aacgggggga tgggtttaga ttaaccccaa tcggtcgcca actcgcccaa
    15661 ctgccagtcg atcctcgctt aggcagaatg gtgatcgagg cggcgaaaaa cggttcgttg
    15721 cacgaagtga tgatgattgt gtcagctctc tcaatccaag accctcgtga gcgtccgcag
    15781 gaaaaacagc agtcggcaga cgataaacac cgccgttttg ccgataaaga gagcgatttc
    15841 ttagcctttg tgaatttgtg gcactttatc caagcccaac aaaaagaact gtcgaaaaac
    15901 cagttccgta atctctgccg taaggattat ttgaactaca accgtgtgcg ggagtggcag
    15961 gatatctacc accaactccg ccttgcagtt agagaaatgg gcttaaaaat taacagtgag
    16021 ccggcaagtt atcagccgat tcacaccgcc ctgctcgccg gcttgttgtc gcatatcggc
    16081 ttgaaagata atgaaaaaat gcactattta ggagcaagaa atgcccactt tttcattttc
    16141 ccgaactcgg cacttttcaa aaaacagccg aaatgggtaa tggccgcaga gctggtggaa
    16201 actaccaaac tttggggacg aatggtcgct cgcattgagc cggaatgggt ggaaccgttg
    16261 gcagtacacc tcactaaatc cagttacagc gaaccacact gggcgaagtc aaaaggagcg
    16321 gtaatggcat cggaaaaagt gtcgctctac ggcattccga ttgtggcaca acgctcggtg
    16381 aattatggct cgatagaccc aaccgtcagc cgtgagattt ttatccgctc ggcgttggtg
    16441 gaaggcgaat gtcacaacaa ttacaaattt ttcaaagaaa atcaccgctt gatccgtgaa
    16501 gttgaggcat tggaacacaa atcccgccgc cgtgatattt tggtggacga gcaggtgctg
    16561 tttgagtttt acgatcagcg gattggcacc gaagttgtgt cgagcaagca ttttgatact
    16621 tggtggaaac aggcaagcaa aaaagatcct gaactgctga actttgaaaa atcgttcctg
    16681 atcaacgaca acgccaacct tgccagcgag ctggatttcc cgaatttctg gcatcaaggc
    16741 gatttaaaac tcaaactgag ctatcagttt gaggtcggaa aagatcacga tggcgtgacg
    16801 gtgcatattc cgctaccgct gcttaaccaa gtggaacccg aaggtttcga ttggcaaatt
    16861 ccggggctac gccacgagct gatcgtctcg ctgattaaat ctttaccgaa atcgctacgg
    16921 cgaaattttg tgccggcgcc gaattatgcg gacgcctttt tagggcgagc cgagccgttt
    16981 aaaaaaccgt tgctggacaa tctaagccac gaactacgcc gaatgacggg tgtattggtc
    17041 gagcctgaac agtgggattt aagccaactg ccgccacatt tgcggatgac tttccgtgtg
    17101 attgatgata aaggcaagaa actgcaagag agcgaaaacc ttgatgagct gaaatttgcc
    17161 ttgaaagatg aggtgcagaa caccctttcc aacattgccg atgacggcat tgagcaaagt
    17221 ggtgtgcata tttggaattt tgccgaattg ccacagttct atgagcagaa aaaagcccat
    17281 ttcagcgtga aagcctaccc tgcgattgtc gatgaacaaa cggctgtggg ggtgaaactg
    17341 tttgaaacgg aatttgagca ggctcgtgca atgcaggcag gacttcgccg tctgctgttg
    17401 ctaaatgtgc catcgccgat taaatatcta cacgaaaaac tgccgaacaa agccaagctg
    17461 ggcttatatt ttgccccgtt cggcaaagta ttggagctga ttgacgactg cattgcctgt
    17521 gcggtagatc agctggtaga agagttcggc gggtttgtct ggacggagga aaaattcacc
    17581 caactgcacg aatttgtgcg ggcaaattta aacgataaaa ccgtagaaat tgccaaacag
    17641 gttgaaaagt gcctcacact ggcctacgag ctaaacaagc ggttaaaagg caagctcgat
    17701 tttacgatgg cgtttgcgtt aagcgacatc aaaacccaaa tcgaagggct gatttacccc
    17761 gactttgtca ccaaaaccgg ctacgcccgc cttgcagatt tataccgtta tttgaccgct
    17821 atcgaacgcc gtttggataa actgttggtg gacagcaaca ccgaccgagc caaaatgcta
    17881 cgggtggaag cagtgcaaga ggcatataaa cagctccttg ccaaactgcc aaaatccaaa
    17941 gcggtgccgg acgaggtact ggaaattcga tatatgatcg aagaactgcg ggtcagtctg
    18001 ttcgctcaac agctcggcac aaaatacccg atttcggata agcggatttt gaatgtgatc
    18061 aatgaaataa agtaatattc cctatacaac aagcggtcag ataagtaaaa aattttgcaa
    18121 ctctgaccgc ttgttttctc gaatacctat tcctctcgct tcagaagcaa acctgctaca
    18181 tttttttgat taaaaaaatc tcaagataaa aattagaaaa ctaaatatat cagaaagttt
    18241 gatctttatc attaactaga ttattattat ttgtaataaa aaattaacta cgtaaaataa
    18301 gcttattttt tggaggtaaa attatgtata aaataaagca ttcatttaac aaaacactta
    18361 ttgcaattag catttctagt tttttatcta ttgcatacgc tacagaatca atagagaatc
    18421 cacaacctat cattcaatta tctgagagcc tcagctcaaa atatagtggc aagggtgtta
    18481 aactaggcgt aatggatgag ggcttcatgg ttaaacaccc tcgccatagt tcacatcttc
    18541 atcctcttat tcatcaatta acaacacccg aaggcgaagt aagaatctac gatgcaagtt
    18601 accctcaatt cgaggtaaac cccgtagaaa aagaagatgg aattgatctt attccttctc
    18661 ttgaaacaca cggtgcaggt gtagctggta ttattgccgc tcaagcagat aaaactcttg
    18721 gtgatggcta tagtggtggt attgcaaagg gagctgagct ttatgttgca acgaagtcat
    18781 ataaacgaac tttagaaaaa gttattcaag atgctaagaa agaattagaa aatgcaaaag
    18841 acgaagagga tgaaaaaacg ccaagtctgg atcaaatggc aaagaatgac ttattagcaa
    18901 gcaaagaaaa agaaatggca attgaacgtg ctgaatgggc atccgggctg aataaattac
    18961 tagataataa tgtttttgca atcaataata gttggaatcc tttttctatt agcgatgaca
    19021 tcaatgttgt agataaattt tatcaatcta tcaagcaaaa taagcacaat ccgctacttc
    19081 aagctattat gagagccaaa aatagcaaca ccttattagt ctttgctgct ggtaatgaga
    19141 gcaagaaaca gccaggcgta atggctcttc taccacgtta ctttcccgag cttgagaaaa
    19201 atttaatttc tgccgttgcg gtagataaag aacaaaaaat tgcttcatac tctaaccact
    19261 gcggagcaag taaaaactgg tgtgtagcag caccgggcga tttacatgtt ttaattggcg
    19321 ttgctgatga acataaaaaa ccacaatatg gcttaacaaa agagcaaggt acgtcatttt
    19381 cagcacctgc tataactgct tcattagcag tattaaaaga acgctttgat tatctgactg
    19441 cgactcaaat tcgcgatact ttattgacta ccgccactga tttaggtgaa aaaggggtcg
    19501 ataatgttta tggctggggt ctcattaacc tgaaaaaagc tgttaatggc ccaactcaat
    19561 tcctaaatga tgaaacgatt accgtaactc gtgatgacca ttggtcgaat ccactcgcca
    19621 gccaatttaa aattacaaaa aaaggggaca aatcactgca tttagacggc gaaaatcatt
    19681 tagatacggt agcagttgaa gaaggtagat tggccttaaa cggtaaaact aaggtgaaaa
    19741 caatcagtaa ccatgcaaat ttagctgtca atggaaccga agttgagcaa aattattctt
    19801 cgtctggaca aagccaatta gaagtgttgg gcaaatctgg gctaattgcc aatgctcaag
    19861 ccaatataca tttagccggc tcgttaaaaa ttgatgataa attaacagaa aaaaccgaag
    19921 caggtgatgt ttcagcgacc gtagtacagt tgaaagataa agcaacttat caaggcggat
    19981 ttacacaatt agtcgaaaac gagaatttag ccaaacgagg gttaatccaa gatctctatt
    20041 tcaaagagag cgaaattatc gcaaaagtga ataagccact aactgatgag aaagccgata
    20101 caaacgggca agccggttta gcattattaa atgcgttaag aactacacct attgcctatc
    20161 gccgtagttg gtataacggt tggctgcaat ctgcactcga acaacgtaaa ttagataatc
    20221 tgcactatgc tgtatctaac aatatttatg cagatagcct tgaattgcta cgtagccaaa
    20281 atgccaaagg cttaacccaa gcacagcaac atttgtttac ggcataccat acaccactgc
    20341 aaacgactgt ttgggctgaa catttgaatc aaaaacaatc agcctcatcg aagcataccg
    20401 atgttaaaca ccaccaatca caattgggag taaaccacaa actggcagat aaaacggtac
    20461 ttagtgcaac actttcacag caaaaaaacc gcttagaaaa accatttgca caagctacct
    20521 taaaacaaac agcattaaat attggcttac gttatcattt agataacgct tggtttagtg
    20581 aagctacatt gcaatttgct cgccagaaat atcaacaaag ccgtcgattt gctagccatc
    20641 aactaggtac tgcagaaacc agaggttcaa cgctcggtgg tgaaatgcgg atcggttatc
    20701 aatttatgcc aaaccaatgg ataattgaac caagccttgg cgtacaatgg attcaaacca
    20761 aaatgaatgg tttaaatgaa agtggcgaac ttgcgactca aacggctgca atgcgttatc
    20821 gtgatgtgaa tattgttcca agcgtgaaat tacagcgaac tttccaactt gagcaaggct
    20881 ctatttcccc ttatatcggg ctaaattact tgcatagatt aaatggaaaa ataaccaaaa
    20941 ttaccagtaa cattgcagga aaaacactgc atagtgaagc aacgacgaaa cgtaatcgcc
    21001 aattaaacgg cgaagtcggg gtgaaactgc attataaaaa ttggtttact gcgatgaatt
    21061 tagattacag tcgagtgaaa tctgcaaacc tatttggttg gaaagtaaat gttggcttta
    21121 gtttctaact tattatggtg ggacacaagc ggttaattta gggtgaaaat ttgcaaattt
    21181 cactctattt tcaaccgctt gagagaaaaa accttgaaca actgttcaag gtttttgttt
    21241 agtgttctat gactaaataa gaaaaaactt attgcttacg gacaaataag gtaattccct
    21301 ccactttctg gacttcaatc ttatctgcta cttgtaaatt attacctata acacgccaag
    21361 tcgtatcacc aaattttcct cgagcgatgc cattaggtaa gatttcaacc acaaagcctt
    21421 gagctcctag catagcatgc tctcgagagt taagggaact gctctgatcc tctttcttgt
    21481 cttttccatg ctgatatttc caccaaataa gactaaaaat agtcgcaatt atcgcaaata
    21541 acgcaatttg taacgcttgc cctaatgtaa aaagtgcaac gatgaaagca agaataagcg
    21601 aggcaaatcc ccaccacata ataaagacac ccggtaatac taattctaat gcaagtagta
    21661 caaagcctaa tatgctccag ccaatccaat taaaaaacca gtccatactc cctccatata
    21721 ctcaattaat ccggttttag gctatgagct tgttttattg ctttttaaaa tttcagcaat
    21781 accagcaaca gaaccaatca aatttccagc ttctaacggc ataagtacaa ctttactgtt
    21841 atctgaagaa cctatttctt tcaaagcttc ggtgtatttt tgtgcaataa aatagttaat
    21901 cgctgtagta tcgcctttag caattgcttc agaaaccatt tgagtggctt tagcttccgc
    21961 ttctgcggct cgttcacgag cttctgcctg taagaatgct tcttgtcttt caccttctgc
    22021 ttttaaaata cgagattgtt tttccccttc agcccgcaga atttcagctt gtcgaatccc
    22081 ttctgcttca agaatatcag cacgtttatt acgctcagct ttcatttgag cgttcattgc
    22141 cgcaaccagc tctttcggtg gacgaacatc ccgaatctca atacgggtga cttttactcc
    22201 ccaaatatta gtcgcctcat cgacaatgga aagtaatcta ccgttaatta aatcacgctg
    22261 agagagcata tcatctagat ccatagagcc gagcacggta cgcatatttg tcatggttaa
    22321 attaacaatt gcttgctcta aatgattcac ttcataggca gctcggcgag catcaactgt
    22381 ttgaacaaaa catacagcat caatcgcaac acttgcatta tcacgtgaaa taacctcttg
    22441 cgatggaata tctaaaactt gctccatcat attcattttt cgcccaatac gatcaataaa
    22501 aggtacgaca atgttcaacc ccgggcttag cgttttagta taacgaccaa aacgttctac
    22561 tgtccaatga tagccctgtg gcacaatttt aatagtcgaa cttaatgcaa ctaaaacaag
    22621 cacaacaaat gcaatactaa caatcggtaa atcaaaattc atcgtttgct ccttaaacta
    22681 atgtgttgaa gaataactaa cgtctactga taattgccaa ttaattgggg atattccttg
    22741 agaaatcaag tagttattgg ctttagaaaa atgtttacaa ccaaaaaatc cacgatatgc
    22801 ggaaagtggt gatgggtgcg gagaagctaa cacacaatgg cgattacgat cgataaattg
    22861 cccctttctc tgagcgtggc ttccccaaag tagaaagact aaattatcac ggtgttgatt
    22921 taattgtgcg atcactttat cggtaaaaat ttcccaacca atttgtgaat gcgaaccggc
    22981 tctaccttgc tcaaccgtta agctggtgtt taacataaat accccttgtt ttgcccagtc
    23041 aattaaatag ccatgcggtg gaatttgaaa tccttcaata tcttcagata attctttata
    23101 catattgacc agagaaggtg gcggggcaac cggcggttta actgaaaagg ctaatccgtg
    23161 ggcttgattt gggccgtgat aaggatcttg ccctaaaatt actactttca cgtcactaaa
    23221 ttcggttaag gcaaaagcac taaacacctc gttttgcgga ggatagatga ctttgccggc
    23281 taatcgttcg ttatgtacat attgtaaaat ttgttgaaaa tacgcttttt gtttttcttc
    23341 gcctaaagct tctgtccaag ttttcataaa accaccaagt gtatattttt tacccaacca
    23401 actcaatcat gtctaaaaat ggttaaattt ttatcgcttt ttatctaaaa aggggtacaa
    23461 taacttcaaa taaatttgaa
//
LOCUS       DANMBQ010000023        22609 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.023, whole genome shotgun sequence.
ACCESSION   DANMBQ010000023 DANMBQ010000000
VERSION     DANMBQ010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22609)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22609)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22609
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.023"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            44..817
                     /locus_tag="PXE92_000814"
     CDS             44..817
                     /locus_tag="PXE92_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5760083.1"
                     /translation="MLKKLSIAALALTLSVSAFAKESLLERINNKGTITVGTEGTYAP
                     YTYHDASGKLTGYDVEVTRAVAEKLDVKVEFKETQWDAMLAGLKGERFDLVANQVALT
                     SPERRATFDKSESYSWDGAALLVREDETKIKTPADVKGVKTAQTLSSNYGEIARENGA
                     DIVPIDGMAQGLLLIQQKRADATFNSHLSLLDYLKKNPNSGLKIVWEKEEKVGAGLIA
                     NKGNDEALAKISKAIVELREDGTLKKLGEQFFGKDISVQ"
     gene            900..1616
                     /locus_tag="PXE92_000815"
     CDS             900..1616
                     /locus_tag="PXE92_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDL5760084.1"
                     /translation="MLNDLLLSIPFMTQARVDLVLSGFWPMVQAAFLVSIPLAIASFI
                     IGMLIAVAVALVRISPATGFFHRLLLWLVKGYISIIRGTPMLVQICIVFYGLPAIGIF
                     IDPIPAAIIGFSLNIGAYGSETIRAAISSVPKGQWEAGYTIGMTYMQTFRRIIAPQAF
                     RVAVPPLSNTFIGLFKDTSLASVVTVTEMFRVAQQVANMSYDFLPVYIEAGLIYWCFC
                     WVLFLIQARLEVRFNRFVAK"
     gene            1626..2378
                     /locus_tag="PXE92_000816"
     CDS             1626..2378
                     /locus_tag="PXE92_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDL5760085.1"
                     /translation="MLKIRNIHKTFGNNAILRGIDLDIQKGQVVVILGPSGSGKTTFL
                     RCLNALEMPEQGTLEFSGNAPLKIDFAVKQSKKEILALRRKSGMVFQNYNLFPHKTAL
                     ENVMEGPVFVQQQAVEIAQKNAKALLEKVGLADKAELYPFQLSGGQQQRVGIARALAI
                     QPELMLFDEPTSALDPELVQDVLNTMKELANEGWTMVVVTHEIKFALDVADVVVVMDG
                     GEIVEQGSPQQLFNHPQHERTKRFLNQIRADK"
     gene            complement(2594..3127)
                     /locus_tag="PXE92_000817"
     CDS             complement(2594..3127)
                     /locus_tag="PXE92_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDL5760086.1"
                     /translation="MEFLAPVISLIVGFLSFVLVLRTWLQFCRVDPRLPISQTLLKIT
                     EPMVSPVGKLIPTVKNICFPALLIAAALVTLQFILFGVDLPRAVLIGLLSVVKTFGQI
                     LFFTTLIRALMSWVTQGNHPLDYTVAQITEPVLGFIRKLLPRTGMLDFSVMVLGFGLL
                     LLNSLFYQIFGGLWAAA"
     gene            complement(3233..3574)
                     /locus_tag="PXE92_000818"
     CDS             complement(3233..3574)
                     /locus_tag="PXE92_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggL family protein"
                     /protein_id="HDL5760087.1"
                     /translation="MAIQRNARQRKKMHLGEYQELGFLIKFTFAEGTGIDQIDETVDR
                     FIDEVIRPNGLALEANGYLNWEGLVCLEKLGKCDESHRQLVKTWLETNGLKEVQVSEL
                     FDIWWDYPAQA"
     gene            complement(3598..4347)
                     /gene="trmB"
                     /locus_tag="PXE92_000819"
     CDS             complement(3598..4347)
                     /gene="trmB"
                     /locus_tag="PXE92_000819"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDL5760088.1"
                     /translation="MSEKQTFADKKRKTVEQAEFTEDGRYLRKVRSFVLRTGRLSDYQ
                     RDMMNNNWANLGLDYQPMPFNFEQIFGNNNPVVLEIGFGMGKSLVEMAEQNPNRNYIG
                     IEVHTPGVGACIAYALEKGVKNLRVICHDATEILRDSIADGTLGGLQLYFPDPWQKAK
                     HHKRRIVQPEFISRVIRKLSPNGFIHFATDWENYAEHMLEVLRQFESELQNTSATNDF
                     IPRPNFRPLTKFEERGHRLGHGVWDLYFTKK"
     gene            complement(4357..5307)
                     /locus_tag="PXE92_000820"
     CDS             complement(4357..5307)
                     /locus_tag="PXE92_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000288132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDL5760089.1"
                     /translation="MNSRILATGSYLPTKVRTNADLEKMVDTSDEWIVTRSGIRERRI
                     AEPDETVATMGAKAAQQALEMAGIEANDIDLIVVGTTTNSHAYPSAACQIQGLLQIED
                     AIAFDVAAACTGFVYALTVADQFVRNGQVKKALVIGSDINSRMLDETDRSTVVLFGDG
                     AGAVILEASEELGIISTHLHASPDLENNLTLRSQKRGEERSGFIEMQGNATFKIAVNQ
                     LSSVVEETLEANNLQKSDLDWLIPHQANLRIITATAKKLEMEMDQVVVTLDKYANTSG
                     ATVPVALDEAVRDGRIQRGQLLLLEAFGGGWTWGSVLVKF"
     gene            complement(5453..6472)
                     /gene="hemB"
                     /locus_tag="PXE92_000821"
     CDS             complement(5453..6472)
                     /gene="hemB"
                     /locus_tag="PXE92_000821"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDL5760090.1"
                     /translation="MQVIQSQYPLRRMRRLRKHDFSRRLVAENQLTVNDLIYPVFVIE
                     GENQRVQVPSMPGVERLTIDQLLVEAAELVKYGVPAVALFPVVGDVKKSLMAEEAYNP
                     QGLAQRAVRALKAQFPELGVITDVALDPFTTHGQDGIIDETGYVLNDVTTEVLVKQAL
                     SHAEAGADIVAPSDMMDGRIGKIREALEQNGFINTQIMAYSAKYASNYYGPFRDAVGS
                     AGNLKGGNKYTYQVDPANGNEGLHEVAMDIQEGADMVMVKPGMPYLDMVWRVKENFGV
                     PTFAYQVSGEYAMHMAAIQNGWLKERECIMEGLLCFKRAGADGILTYFAKRVAKWLYE
                     EAQAK"
     gene            complement(6553..7308)
                     /gene="tatC"
                     /locus_tag="PXE92_000822"
     CDS             complement(6553..7308)
                     /gene="tatC"
                     /locus_tag="PXE92_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDL5760091.1"
                     /translation="MSQVDESQPLITHLIELRNRLLRSFICVLLVFCGLVYWANDIYT
                     LLATPLTDNLPDGATMIATNVATPFFTPIKLTIVVSVFLSVPFILYQIWAFVAPALYK
                     QEKRLVYPLLVSSTLLFYCGVAFAYYVVFPLVFGFLTSTAPEGVTMATDISSYLDFVL
                     TIFMAFGICFEVPVAIILLCWAGVTTPEDLKAKRPYIIVAAFVIGMLLTPPDIFSQTL
                     LAIPMCLLFEVGVLFARFYRPKDDDEPSEQVAQ"
     gene            complement(7295..7939)
                     /gene="tatB"
                     /locus_tag="PXE92_000823"
     CDS             complement(7295..7939)
                     /gene="tatB"
                     /locus_tag="PXE92_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HDL5760092.1"
                     /translation="MFDIGFSELVLIMIVGLVVLGPKRMPIAIRTVMGWVSTIRGLAA
                     NVQNELAQELKLQELKESIKKAEELNLSSLSPELNKTVEDLKMSATQLQDSLNSAKNE
                     LEKTAAESSTIPKLTDEQVAEIQQKIEQESQVLEAQELQKNAQNKPLEVDSLSEQLNV
                     TRTEKPLSADELAEQAEMDESLLTLESYYPPDDDLATPQSSESAQKSEANNVAS"
     gene            complement(7943..8164)
                     /gene="tatA"
                     /locus_tag="PXE92_000824"
     CDS             complement(7943..8164)
                     /gene="tatA"
                     /locus_tag="PXE92_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HDL5760093.1"
                     /translation="MGGISIWQLLIVVAIIVLLFGTKKLRTLGSDLGESVKGFKKAMA
                     DEKKDAEFEKVEAKDAISAEQKAKEKEQA"
     gene            complement(8275..9912)
                     /gene="ubiB"
                     /locus_tag="PXE92_000825"
     CDS             complement(8275..9912)
                     /gene="ubiB"
                     /locus_tag="PXE92_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HDL5760094.1"
                     /translation="MNIKNLNRFYHIIRTFLRYGIDEAIPNLPITRKIKLGRKALFWV
                     KNQHSDKPYGVRLRLALQELGPVWIKLGQMLATRRDLFAPELADQLALLQDNVEPFDG
                     KIARQIIEQALGGKLETWFENFDETALASASIAQVHTAKFNQNQPLAGKDVVLKVIRP
                     GIEPVIKADLELMYEIAHFIPKLSNDGKRLRAVEVVREYEKTILDELDLRKEMHNAIR
                     LRANFENSEMLYVPEMYQDFCHKNLIAMERIYGIPVSNIAELEANSTDMKLLAERGVQ
                     VFFTQVFRDSFFHADMHAGNIFVNREHPENPQYIGIDCGIVGTLNHNDKRYLAESFVA
                     FFNRDYRRVALMHVESGWTPPDTDIDKFEQAFREVCEPIFAKPLSEISFGHVLLNLFN
                     VAREFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQTAKPFLQNWLNEQVGVKAMV
                     RDIKQRLPQYREHFAEFPEALFKALQEQKQINFRLAEINESLKAQNSNANSRFLVLSI
                     SAIVICGAFWKFESLPIWLSVPLLTLFPLVLILSQRK"
     gene            complement(9986..10963)
                     /locus_tag="PXE92_000826"
     CDS             complement(9986..10963)
                     /locus_tag="PXE92_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5760095.1"
                     /translation="MKQIIAQARENAVRAVDFQRVLMYWHIGKRIFEQEQQGQERADY
                     GTYLIKMLAKELEPEFGSGFCSRQLERYRQFYRAFPIATALRSQLNWTQYRRLIQISD
                     SDKREFYLAESCKNNWSSRQLERQINSSLYERLLLSNDKESVLAVARNEQQPVDPKQL
                     IKDPMVLEFLGLKRESAYYEKDLEQAIITHLQDFLLELGNGFSFIARQKRLHLDGDDF
                     FVDLVCYNRLLQCFVIFEIKTHKLTHQDLGQLQMYVNYFDRVEKLPHENATIGVLLCA
                     DKNDAVVKFSLPENQNKIFASQYQLYLPSEQTLIAEVQKEIENFEQKYP"
     gene            complement(11124..11771)
                     /locus_tag="PXE92_000827"
     CDS             complement(11124..11771)
                     /locus_tag="PXE92_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HDL5760096.1"
                     /translation="MLNNVKQQLMLPQFTFGLIETAFNALLKRSPHIEPNLRKLSGKV
                     LKIALTSPKIDFFVLFSESRTDWLGNYEGEADCTVQLAFDTLPKLADKQKLTELINNK
                     SLVLTGDIQVLQHFTALLEQLEKDPAELLSPFVGDVVAQTSTDLAKKLLGKVKAQFEQ
                     NNQHLVENLIQERPVLVHRLQAVHFYDQVEELAQQALKLEQKFTHYVRSSSHQQS"
     gene            complement(11962..12714)
                     /gene="ubiE"
                     /locus_tag="PXE92_000828"
     CDS             complement(11962..12714)
                     /gene="ubiE"
                     /locus_tag="PXE92_000828"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HDL5760097.1"
                     /translation="MQQSAETTHFGFKTVAKEEKQQLVANVFHSVAGKYDLMNDLLSF
                     GIHRVWKRFTIDCSGVRKGQKVLDLAGGTGDFTAKFSRIVGESGEVILADINSSMLEV
                     GREKLRNLGVVGNVSYVQANAECLPFADNTFDCIVISFGLRNVTDKDKALRSMFRVLK
                     PGGRLLVLEFSKPIIDPISQLYNFYSFNILPKVGEVVVNDAESYRYLAESIRMHPKQD
                     ELKAMMEQTGFESVNYYNLSAGIVALHRGYKF"
     gene            13059..14012
                     /gene="corA"
                     /locus_tag="PXE92_000829"
     CDS             13059..14012
                     /gene="corA"
                     /locus_tag="PXE92_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDL5760098.1"
                     /translation="MIRAFGLDNACLISVDETNPTLLNDAIWIDLIDPSEAERTVLEN
                     RLDQTLAEERELEDLEASARFFEDEDGLHLHSFFYCLDDDDYADIATVAFTIRDGRLF
                     TLRDRDLPAFRLYRMRSRREKLIDSNAYELLLDLFETKIEQLADVIEEVYADLEKLSR
                     VILNGQQENENFNDALSRLTEFEDASSKVRLCLMDTQRALSFLLRKTRLPNNQLEQAR
                     DIMRDIESLQPHNESLFQKVNFLMQAAMGYINIEQNRIMKFFSVVSVMFLPATLVAST
                     YGMNFEFMPELHFQYGYPMAIGLMIVAASAPYLYFKRKGWL"
     gene            14165..15970
                     /locus_tag="PXE92_000830"
     CDS             14165..15970
                     /locus_tag="PXE92_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HDL5760099.1"
                     /translation="MLSKLQRFTLMIKSTIIKHPLEILFVTYVTILLINNVSDYELIK
                     RFQNLIALFPICFILLYLIRDTKAYWLFAPIPIAIVFFFGQINLTLLEDSRYWATIFC
                     VFLCLISQYWYKNNHYFVAGTTNKLVNIVFATVLSGIIFATLSAITIAIIALFDLNKQ
                     NNFHIFEKFGIFSSFWAFPVLFLTLEQQTTNDSRYLNRISEMLLNWILSPALIIYTAI
                     IYAYVIFIAAKGQMPDGVVANVALPYLAFGLAIQAVQLLLKNAKWQWFYSHFTYLALL
                     PLTLIWYAIYIRFSHYGLTEARIYLVIGTITLSICYTLLLFKQLAQYRLFSAVSIAII
                     LISVFILDPKTVALKDQTKRLDNYLLKHKLLDVNNKISTKAVLKYQESLNENRDEAEY
                     FYSMLHYVARGMPAAQFKEKYGVNSSYDLMSEIRERNTDPRYFEATNSELVRLTKADM
                     ANAREYITFSSQLYRPNSFSHQKIENKLCQKLLSQGYYFEGNILNIEYQYSETAQDCS
                     SITQDPTEFVIYFKGLGTTIEFNINDILKKIFAKHQLSITQQHKNEVLEKIKGDLLKM
                     DLGNSVLGLKHIELRFEDNIGYIVESISTQYIMLK"
     gene            complement(16013..19042)
                     /locus_tag="PXE92_000831"
     CDS             complement(16013..19042)
                     /locus_tag="PXE92_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4981 domain-containing protein"
                     /protein_id="HDL5760100.1"
                     /translation="MSLPNYYQDPSVLHLNTTLHHAYFIPFAKGQTPNQLEREQSELF
                     TLLNGDWKFNFYPSPHDLPEDFLNTKFTHQIPVPSNWQTQGFDAHQYTNINYPIPFDP
                     PYVPHQNPCGVYQREITFNPKPNKRYLLNFEGVDSCLFVYVNGEFVGYGQISHSTNEF
                     DITKQLKQGKNSLVVVVLKWCDGSYLEDQDKFRMSGIFRDVYILEREQNYLQDFFIRY
                     QLNADLSKAELKVETQFSTYTEAVHFQLFDPENRLVCEQTSGDFCQEICNLCLWNAED
                     PTLYTLCLSYQNEIIEQKIGFRQIRVENGVMLFNNAPIKFKGVNRHDSDPKTGYSISR
                     EQALVDLRLMKAHNINAIRTAHYPNAPWFSELCDQLGFYLIAESDLESHGSSAVYIES
                     PENSIFLNVPNPNKQEEIRQQAVDNFCYFARDPLFKQAILDRNIANVERDKNRTSVII
                     WSLGNESGFGENFEVAARWVKQRDPSRLTHYEGSIYQHSAHQNDLSNLDLYSEMYPST
                     ERLEEYFSDSANHKPFILCEYSHAMGNSSGDMEDYWQTFQRYSGACGGFVWEWCDHAP
                     LLPNSELSAEQKTEKYGYGGDFGETLHDGNFCMDGLVSQQRVPHSNLLEVKNVNRPVR
                     AELKAGKIWLKNQLDFSDLADYLTVHYCFSENGETTLQGQCLVNCQPNQTACLPLTLP
                     EPNGKLQLLTLDYSLNESTALLEKGHHLGFDQITLHQAMVTPALNPRPQAVIFVQDFA
                     NEWRIQQGDYRYTFDKLKGIFSRIEKNGEAVIEQPLDFNIWRAPTDNDRLIREFWKKA
                     GYDNCYTRAYHTELMQDKNGVNITAECGIVATAQSRILTLKVNYHLAPNGEMTIQVQA
                     TRPAHLPFLPRFGLRFFLNKRNNQVSYFGYGEQESYIDKYHLAKLGAYQTSARENHTD
                     YLKPQENGSHFGTHYVQANGITVTSPQPFSFNLSPYTQEELTTKSHSYDLVESPSTVL
                     CVDYKMSGIGSNSCGPNLKPQYRLNETNFEWLLKLSF"
     gene            19220..20077
                     /gene="menB"
                     /locus_tag="PXE92_000832"
     CDS             19220..20077
                     /gene="menB"
                     /locus_tag="PXE92_000832"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005723289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HDL5760101.1"
                     /translation="MLYPSEEFLYAPVEWVDHSEGYTDIRYHKSKDGIAKITINRPEV
                     RNAFRPQTVKEMIEAFSDARFDEKIGVIVLTGEGEYAFCAGGDQKVRGDYGGYKDESG
                     VHHLNVLDFQRDIRTCPKPVVAMVAGYAIGGGHVLHMLCDLTIAADNAKFGQTGPKVG
                     SFDGGWGASYMARLVGQKKAREIWFLCRQYNAQEALDMGLINTVVPYADLEKETVRWC
                     REMLQNSPIALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNEKREP
                     DFSKFRRNP"
     gene            20160..22562
                     /gene="mrcB"
                     /locus_tag="PXE92_000833"
     CDS             20160..22562
                     /gene="mrcB"
                     /locus_tag="PXE92_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1B"
                     /protein_id="HDL5760102.1"
                     /translation="MSDVELNEQSEQEPEQKPKKRNYFLSTLFKIGVIGACSMAFYGI
                     YLDGKIRSKMDGQIWELPAEVYARIESIKIEDNLTLEQTKQALLDNGYRQVSQVATPG
                     DFKIEENQLVLLRRAFPFPETPESQRVLRLTFKQDKLTYIEDLVQGKLIEEFRLDPKL
                     LALLHSDSDEERQALRLQQYPRLLIESLILTEDRRFYQHDGISPIGIARALITNYQAG
                     RTVQGGSTLTQQLVKNLFLSNERSLVRKVNEALMSVILDFRYDKNRILETYLNEIYLG
                     QNGSYQIHGFALASQFYFGRPIQEISLDQIALLVGMVKGPSLYNPWRNPQGAVERRNV
                     VLRLLLDHQVINQELYALLSSRPLNIREKGTIYREQPAFMQALTIDLKNELGEIKSAQ
                     LSGTKIFTTLDRKQQRSAEQAVITGLEDLESKNKKVSDLQSAIVVAEYRTGKVRAIVG
                     DRLTQFAGFNRAIQSKRQIGSLVKPSVYAIALAQPELFRLNTPIQNKQISIKVGSTYW
                     TPRNYDRSFSGSVMLMDALVRSLNIPTVNIGMKVGLKKVIAKQKEMGWDNAEIPPYPS
                     TLLGSYSISPYDVTRSYQVIANEGLKTPLTTIEAIISHNGEMFYQRDSGKVSEQVLPP
                     EAAVQTMYAMQQVVERGTARSLQNDFAKLKLAGKTGTTNNARDTWFVGIDGEHVTTVW
                     LGKDNNGDTNLTGSSGALYVYKQYLERALPQAYRLPKLNTMQWVGINSYGSWNCDSGR
                     QIPVWRDKGQRYCTSAGNVVATEKPSVWDALSLKKENIEAKAEEAEGKQPIPTEEVAP
                     IE"
BASE COUNT         6509 a         4854 c         4598 g         6648 t
ORIGIN      
        1 aaatttgcaa aaaatttatt ttaccaatta aaaggaaatg attatgttga aaaaattatc
       61 aattgctgca ttagctctta ccctttctgt ttctgcattt gctaaagaga gcctacttga
      121 gcgtataaac aacaaaggga ctattactgt gggtacggaa ggaacttatg ccccttacac
      181 ctatcacgat gcgagcggta aattaaccgg ttacgatgta gaagtaaccc gtgcggtggc
      241 tgaaaaatta gacgtaaaag tggaatttaa agagacacaa tgggacgcta tgttagccgg
      301 tttaaaaggt gagcgttttg acttagtggc aaaccaagtg gctttaacca gcccggaacg
      361 tcgagcgaca tttgataaat ccgaatctta cagctgggac ggtgccgcct tattagtgcg
      421 tgaagatgaa actaaaatca aaacccctgc tgatgtaaaa ggcgtgaaaa ctgcccaaac
      481 cttgagctca aactatggcg agattgcccg tgaaaacggt gcagacatcg tgccaattga
      541 cggtatggct caaggcttac tgttaattca acaaaaacgc gccgatgcaa ctttcaatag
      601 ccacttatcg ctattagatt acttgaaaaa gaacccgaat tccggcttaa aaattgtgtg
      661 ggaaaaagaa gaaaaagtgg gtgcaggctt aattgcgaat aaaggcaatg acgaagcatt
      721 agcgaaaatc agcaaagcaa tcgtagaatt acgtgaagac ggcacgttaa aaaaattggg
      781 cgagcagttc ttcggtaaag atattagtgt acaataatcc atattggatt aggcttgggg
      841 cgaattcgcc ccttttattt ttaaatctcc ctcaaaacgg gagattttag gtttttcaga
      901 tgttaaacga tctacttctc tcaatcccct ttatgaccca agctcgggtc gatttagtgc
      961 taagcggttt ttggccgatg gtacaagcgg catttttagt ctctattccg ctggcaatcg
     1021 cctcatttat tatcggtatg ttaattgccg ttgcagttgc attagtgcga attagccctg
     1081 caacaggctt ttttcaccgc ttgctactgt ggctggtaaa aggttatatc tcgattattc
     1141 gcggcacgcc gatgttggtt cagatctgta ttgtgtttta tggtttgcct gcaatcggca
     1201 tttttatcga tccgattccg gcggcaatta tcgggttttc actcaatatc ggggcttatg
     1261 gctcggaaac gatccgtgct gcgatctcct ccgtgccaaa aggacaatgg gaagccggtt
     1321 atactatcgg tatgacttat atgcaaactt ttcgccgtat cattgccccg caagcgtttc
     1381 gagttgctgt tccgccactt agcaacacct ttatcggtct gtttaaagat acctctcttg
     1441 cctccgttgt taccgtaacc gaaatgttcc gggttgctca acaggtagca aatatgtctt
     1501 atgacttcct acctgtttat attgaagccg gtttgattta ttggtgcttc tgctgggtgc
     1561 tatttttaat tcaggcgaga ttggaagtcc gctttaaccg atttgtggcg aaataaggag
     1621 gaattgtgct taaaattcgc aatattcata aaacctttgg caacaacgct attctacgcg
     1681 gcattgattt agatattcaa aaagggcaag tggtagtaat tttaggccct tccggttcag
     1741 gcaaaaccac ctttcttcgt tgcttaaatg cactggaaat gcccgagcaa ggcacattgg
     1801 aatttagtgg taatgctccg ctgaaaattg attttgccgt aaaacagagc aaaaaagaga
     1861 ttttagcgct acgccgcaaa tccggtatgg tgttccaaaa ctacaacctg ttcccgcata
     1921 aaaccgcatt ggaaaatgtg atggaaggac cggtatttgt gcaacaacaa gcggtcgaaa
     1981 ttgctcaaaa aaatgcaaaa gccctgttag aaaaagtcgg actggcggat aaagcagaac
     2041 tctacccgtt tcaactgtca ggcgggcaac agcaacgggt tggcattgca cgagcattag
     2101 caattcagcc ggagctgatg ttatttgatg aaccaacttc ggcacttgat cctgagttag
     2161 tgcaagacgt gctaaatacg atgaaagaac tggcaaatga aggctggaca atggtcgtgg
     2221 ttactcacga aatcaaattt gcccttgatg ttgccgatgt agtggtggta atggacggcg
     2281 gtgaaatcgt tgaacaaggc tcgccacagc aactgtttaa ccacccacaa cacgaacgaa
     2341 ctaaacgttt tttaaatcaa atcagagcgg ataaataaga aacgatagcg ctagcgtcca
     2401 cgctagtgct atctaataaa tggtacaagc ggttaattat gtataaattg ttatactgtt
     2461 ttggcacgag cgtggacgct cgcgccatcg tacagtaaaa tcagctaaca aggttcccca
     2521 taaaggataa ataagacaag gctccttaat cttttagatt aaggagctta tttttagatt
     2581 ttagaaatcc gatttaagcc gcagcccata gtccaccaaa aatttggtag aacaagctat
     2641 ttagtagcaa taagccgaaa cctagcacca ttaccgagaa atctaacatt cccgttcttg
     2701 gcaggagctt gcggataaaa cctaacaccg gttcggtaat ttgtgctacc gtgtagtcta
     2761 atgggtggtt gccttgagtg acccagctca ttaatgcacg aatcaaggtg gtgaaaaata
     2821 gaatttgtcc gaaggttttg accacactta ataagccgat taatactgct ctgggtaaat
     2881 ctacgccaaa cagaataaac tgtaacgtta ccaaagcggc ggcaattaat agtgccggaa
     2941 agcaaatatt tttaacggtt ggaatcagct tgccaaccgg tgaaaccatc ggttcggtaa
     3001 ttttaagtaa ggtttgtgaa atcggtaaac gaggatcaac ccgacaaaat tgcagccaag
     3061 ttcttagcac cagcacaaaa cttaaaaagc caacaataag cgaaataaca ggagctaaaa
     3121 attccatctc tttttctctt tctatacaaa acaagcggtc gttttttaga aaaaatttgc
     3181 aaattttcag taaaatctga ccgcttgtat cttattaaat taactaggca aattaagctt
     3241 gtgctgggta gtcccaccaa atatcaaata attcgctcac ttgaacctct tttaagccgt
     3301 tagtttctaa ccaagttttc actaattggc ggtgagattc atcacatttg cctaattttt
     3361 ctaagcagac taaaccttcc cagtttaagt agccgttcgc ttcaagggct aaaccgtttg
     3421 gtcgaatcac ttcatcgata aaacgatcta cggtttcatc aatttggtca atgcctgtgc
     3481 cttcagcaaa ggtgaattta attaagaaac ctaattcttg gtattcacct aagtgcattt
     3541 ttttacgttg gcgtgcgtta cgttgaatag ccattttttc tctcctctat gaataaatca
     3601 tttctttgta aaatataaat cccacacccc gtgtcctaaa cgatgccctc gctcttcaaa
     3661 tttggttagc gggcggaaat tcggacgtgg aataaaatca ttagttgctg atgtattttg
     3721 caactcgctc tcaaattggc gtaatacttc aagcatatgt tctgcgtaat tttcccagtc
     3781 ggtggcaaaa tgaataaagc cgttagggct taattttctg atcacacggc tgataaattc
     3841 aggctgcaca atacggcgtt tgtggtgttt tgctttttgc caagggtctg ggaagtaaag
     3901 ctgtaagcca cctaatgtac cgtcagcaat gctgtctcgc aaaatttcgg tggcatcgtg
     3961 gcaaattact cttaaattct tcacgccttt ttctaacgca taagcgatac aagcccccac
     4021 cccgggcgtg tgcacctcaa tgccgatata gttgcgattc gggttttgct ctgccatttc
     4081 caccagcgat tttcccattc cgaagccgat ttctaacact accgggttgt tattgccgaa
     4141 aatctgctca aaattaaagg gcattggctg gtaatctaag cctaaatttg cccagttgtt
     4201 gttcatcata tcacgttgat aatcgctcaa acgaccggta cgcaatacaa aactccgcac
     4261 ttttcgtaaa taacgcccat cttcggtaaa ctcggcttgc tcaacggttt tacgtttttt
     4321 atctgcaaaa gtctgttttt ctgacatttt cttgccttaa aacttcacta ataccgaacc
     4381 ccaagtccag ccaccgccga atgcttcaag gagtagtaat tgcccacgtt gaattcgccc
     4441 gtcacgcacc gcttcatcta atgccaccgg cactgttgct ccactggtat tggcatattt
     4501 atcaagggta accaccactt gatccatttc catctctaat tttttcgccg ttgcggtgat
     4561 aatgcgtaaa ttcgcttggt gcggaatcag ccaatctaaa tcggattttt gtagattatt
     4621 cgcttctaag gtttcttcta ccacgcttga aagttggttt actgcaattt taaaggtggc
     4681 attgccctgc atttcaataa agccggaacg ctcttcgcca cgcttttggc ttcttaaggt
     4741 taagttattt tctaaatccg gtgaggcgtg caagtgggtt gaaataatac ccagctcttc
     4801 actcgcctct aaaatcaccg ccccagctcc gtcaccaaat aatactactg tgctgcggtc
     4861 ggtttcgtct aacattctgg aattgatgtc tgaaccaata accaatgcct ttttcacttg
     4921 cccgttacgc acgaattgat cggcaacagt taaagcatac acaaatcctg tacaagccgc
     4981 tgccacatca aaagcaatcg cgtcttcaat ctgaagcaag ccttgaattt ggcaagctgc
     5041 acttgggtaa gcgtgggagt tggtagttgt tcccaccaca attaaatcaa tgtcatttgc
     5101 ctcaattcct gccatttcca gtgcttgttg agcggctttt gcccccattg ttgccactgt
     5161 ttcgtcaggc tcggcaatac ggcgttcacg aatgccggaa cgggttacga tccattcatc
     5221 agaggtatcg accatttttt ctaaatcagc attggtacgc acctttgtcg gtaaatagct
     5281 tcccgttgct aaaattctac tattcatatt tttattattc tcaatcaatt aaatgataat
     5341 ccgttattat agcttgaaaa ccaacaaata tataggcttt acaagcggtc atttttagca
     5401 aaaaagttgc attcacgaac gattttgcac tagaaccacc gcttgctagt atttatttcg
     5461 cttgagcctc ttcgtatagc cacttcgcta ctcgcttggc gaaataagtt agaataccgt
     5521 ctgctcctgc ccgtttaaag cagagtaatc cctccataat gcactcacgc tctttcagcc
     5581 agccgttttg gattgccgcc atatgcatcg cgtattcgcc cgaaacttgg taggcgaagg
     5641 ttggcacgcc aaaattctct ttcacacgcc acaccatatc caaataaggc atacccggtt
     5701 tcaccatcac catatctgcc ccttcttgaa tatccatcgc cacttcgtgc aagccttcgt
     5761 tgccgttagc cggatcgact tggtaagtgt atttattacc gccttttaag ttgccggcag
     5821 aacctactgc atcacggaac ggtccgtaat aattagacgc atatttagcc gaatacgcca
     5881 taatttgcgt attgataaaa ccgttttgct caagggcttc acgaattttg ccgattcgac
     5941 cgtccatcat atcgctcggg gcaacaatat ccgcccccgc ttctgcgtgc gataacgcct
     6001 gttttaccaa tacttcagta gtcacatcat tcagtacata gcctgtttca tcaataatgc
     6061 cgtcttgtcc gtgcgtggta aacgggtcta acgccacatc agtaatcacg cctaattccg
     6121 gaaattgagc ttttaaagct cgcacggcac gctgtgccaa cccttgcggg ttataggcct
     6181 cttctgccat cagtgatttt ttcacatcac ccaccacagg gaaaagagcc accgcaggca
     6241 cgccatattt aaccagttct gcggcttcaa ctaaaagctg gtcgatagtt aaacgctcta
     6301 cacccggcat agaaggcact tgtactcgct gattttcccc ttcgatgaca aaaacagggt
     6361 aaatcaaatc attaacggta agttgatttt ctgccactaa gcggcggctg aaatcgtgct
     6421 tgcgtaaacg acgcatacgg cgtaaaggat attgggattg aattacttgc atttttaatt
     6481 tcctaattct taaaatacct attcttgaaa taagaaaggc atagcaaaca ggtgctatgc
     6541 cttttcaaaa tattactgtg caacctgctc tgatggttca tcatcatctt tggggcgata
     6601 aaaccgagca aatagcacac caacttcaaa caataaacac attggaattg ccaataatgt
     6661 ttgcgagaaa atatctggtg gggtgagcaa cataccaatt acaaatgctg ccacaataat
     6721 ataagggcgt tttgccttta aatcttcggg tgtggttacg cctgcccaac ataacaagat
     6781 aatcgcaacc ggcacttcaa agcagatccc gaatgccata aaaatggtta aaacgaaatc
     6841 aagatagcta ctaatatccg ttgccattgt taccccttcc ggagcggtag aggttaaaaa
     6901 gccaaataca agcggaaata caacataata ggcaaaagcg acaccacaat aaaacagcaa
     6961 tgtgctagat accaataatg ggtaaaccaa acgcttttcc tgcttgtata aagcaggggc
     7021 gacaaacgcc caaatttggt acaaaataaa aggaactgat aaaaacaccg aaaccacaat
     7081 ggttaattta attggggtaa aaaacggagt ggctacattg gttgcaatca ttgttgcacc
     7141 gtctggtaaa ttgtccgtta aaggtgttgc caataaggtg taaatatcat tggcccagta
     7201 aaccaatccg caaaacacca agagcacaca gataaaacta cgcagtaatc ggtttctcag
     7261 ctcaattaaa tgtgtaatca gaggttgaga ctcatcaact tgcgacatta tttgcctccg
     7321 atttctgcgc tgattctgat gattgaggcg tagctaaatc atcatctggc ggatagtaag
     7381 attccaacgt taaaagcgat tcgtccattt ctgcttgttc agccagctca tcagccgaaa
     7441 gtggcttttc tgtccgcgta acattaagtt gctcagataa actatccact tcaagcggtt
     7501 tattttgcgc atttttttgc aattcttgcg cctctaacac ctggctttct tgctcgattt
     7561 tttgctgaat ttctgcgact tgctcatcgg ttaatttagg aattgtgctg ctttccgcag
     7621 ccgttttttc caactcattt tttgcagaat taagcgaatc ttgcaactgg gtggctgaca
     7681 ttttcagatc ttccaccgtt ttatttaatt ctggcgaaag ggagcttaaa ttcaactctt
     7741 ctgccttttt aatgctctct tttaattctt gcagtttcag ctcttgagcc agttcatttt
     7801 gtacgtttgc ggctaaacct cgaattgtac tcacccagcc cattacggta cgaatcgcaa
     7861 tcggcatacg tttcgggcct agcaccacca agcccacaat cataatcagt actaattcag
     7921 aaaaacctat atcaaacacg gattaagcct gctctttctc ttttgctttc tgctctgctg
     7981 aaattgcatc ttttgcttcc actttttcaa attcagcatc ttttttctca tctgccattg
     8041 cttttttgaa gccttttaca gattcgccca aatccgaacc taaagtacgt aatttcttcg
     8101 taccgaaaag taatacgatg attgcaacca caatcagaag ctgccaaata ctaataccgc
     8161 ccataaaaac tcctttcatt taatagggaa tagataaaat aaaacgctgt ttattatatg
     8221 ttactttgac atataaaaaa gtaattttgc aaaaaatttg tcaaaaacaa ccgcttattt
     8281 gcgttgactc aaaatcaata ccagtggaaa taaagttaat aacggcacac ttagccatat
     8341 cggcaaagat tcaaatttcc aaaatgcgcc acagatcaca atcgctgaaa ttgacagcac
     8401 aagaaaacgg ctatttgcgt ttgaattctg tgcttttaaa ctttcgttaa tttccgctaa
     8461 acggaaatta atttgctttt gctcttgtaa ggctttaaac aatgcctccg gaaactccgc
     8521 aaaatgctcc cgatattgcg gtaaacgttg cttaatgtct cgaaccatcg ctttcacacc
     8581 tacctgctca ttcagccagt tttgtaaaaa cggttttgcg gtttgccata aatccaactg
     8641 tggataaacc tgcctgccca aaccttcaat ataaagaagt gttttttgca acaacaccaa
     8701 ctgcggctgc acttccatat taaattctct tgccacatta aacaggttga gcaaaacgtg
     8761 tccgaatgaa atttccgata acggcttagc aaaaatcggc tcacatacct cacgaaaggc
     8821 ttgctcaaat ttatcaatat cggtatccgg cggcgtccag cccgattcca cgtgcattaa
     8881 ggcaacacgg cggtaatctc ggttgaaaaa tgcgacaaaa ctttcggcta aatagcgttt
     8941 gtcattgtgg ttcaacgtgc cgacaatccc gcagtcaatg ccgatatatt gcggattttc
     9001 cgggtgttct ctgttcacaa aaatattgcc ggcgtgcata tcggcgtgga aaaaactgtc
     9061 acggaatact tgggtaaaaa atacctgcac accacgctct gccagcaatt tcatatcggt
     9121 gctgttcgct tccaactcgg caatgttaga cactggaatg ccataaatcc gctccatcgc
     9181 aatcaagttt ttatggcaaa aatcttgata catttcaggc acatacagca tttcgctatt
     9241 ttcaaaattc gcccgaagcc gaatggcatt gtgcatttct ttgcgtaaat ccagctcgtc
     9301 taaaatagtt ttttcgtact ctcgcaccac ttcaaccgcc cgtagccgtt tgccgtcatt
     9361 cgataatttc gggataaagt gagcaatttc atacatcaac tctaaatccg ccttaatcac
     9421 cggctcaatg cccgggcgaa tcacttttaa caccacatct ttgcctgcaa gcggttgatt
     9481 ttggttaaat tttgccgtgt gaacctgtgc aatcgaagca gaagctaagg cagtttcatc
     9541 aaagttttca aaccaagttt caagctttcc gcccaaagcc tgctcgataa tttgacgagc
     9601 gattttgccg tcaaacggtt caacattatc ttgtagcaag gcgagctggt cggcaagctc
     9661 cggtgcaaac agatcacgtc tggtagctaa catttgcccg agcttgatcc aaaccggtcc
     9721 aagctcttgc aaagccaaac gtaaacgtac accgtaaggt ttgtctgaat gttgattctt
     9781 cacccaaaac aaagccttac gccctagctt tattttgcgg gtaattggca gattcggaat
     9841 ggcttcatca ataccatagc gaagaaaagt gcggataata tggtaaaagc ggttgagatt
     9901 tttgatgttc attgaaatat atatttaatg gtaattagga agattttagc aaaattctgt
     9961 aaaaatttaa ccgcttgttg ggctactatg ggtatttctg ctcaaaattc tcaatttctt
    10021 tctgtacttc cgcaataagt gtttgttcag aggggaggta aagttggtat tggctggcaa
    10081 aaattttatt ctgattttcc ggtagcgaaa attttaccac cgcatcattt ttatcggcac
    10141 aaagcaagac accaatagtg gcattttcgt gcggcagttt ttcaactcgg tcaaaataat
    10201 tgacgtacat ctgtaattgc cccaaatctt gatgggtgag cttgtgggtt ttaatttcaa
    10261 aaatcacaaa acattgaagt aaacggttgt aacaaaccaa atcgacaaaa aaatcatcac
    10321 cgtctaggtg caaacgcttt tggcgtgcga taaacgagaa accgttaccc aattctagta
    10381 gaaaatcctg caaatgcgta atgatggctt gctctaaatc cttttcgtaa taagcacttt
    10441 cccgttttag tccgagaaat tccaatacca tcgggtcttt aatgagctgt ttcggatcaa
    10501 ccggctgctg ctcatttctg gcaacagcaa gcacactttc cttatcatta ctgagcaata
    10561 atcgctcgta tagactacta ttaatttgcc gttccagctg gcgtgaactc caattattct
    10621 tacaactttc agccaaataa aattcccttt tgtcagaatc ggagatttga attagacgac
    10681 gatattgtgt ccaattcaat tgcgaccgca gtgcggtcgc aattggaaac gcacgataaa
    10741 actggcgata acgctctaat tgacggctac aaaaaccact tccaaattct ggctcaagct
    10801 cttttgcgag cattttaatc aggtatgttc cataatcagc acgctcttgc ccttgttgct
    10861 cctgttcaaa aatccgtttt ccgatgtgcc aatacatcag cacacgttgg aaatctaccg
    10921 cacgaaccgc attttcacga gcttgagcaa taatttgttt aatatcttag atcatcgttg
    10981 tttctattaa cataaaagcc tccgttttgg attaagttta tgcttaatct atccggaggc
    11041 aatttctttc actcaacttt tcgagtcata tcacaatttt attttgttaa atttaatttt
    11101 gcacaaacgc ttgcgtttga acatcagctt tgctgatggc tcgaagagcg aacgtagtga
    11161 gtaaattttt gctctaattt gagcgcttgt tgggcaagtt cttcgacttg gtcatagaaa
    11221 tgcaccgcct gtaaacgatg caccaacacc ggtctttctt ggattaaatt ctcaaccaaa
    11281 tgttgattat tttgctcaaa ttgagctttt actttaccta gcaatttttt agcaagatcg
    11341 gtgctagttt gagccactac atcgccaaca aaaggggaaa gcagttcggc agggtctttt
    11401 tcgagctgtt caagtaatgc agtgaaatgt tgcaacactt gaatatcgcc cgtcagcacc
    11461 aacgatttat tattaatcag ctcggttaat ttttgcttat ccgctagttt cggcagggtg
    11521 tcaaatgcca gttgcaccgt acaatctgct tccccctcgt agttgccaag ccaatcggtt
    11581 cggctttcgc taaacaacac aaaaaagtcg attttaggcg aagttagggc gatttttagc
    11641 acttttccgg acaatttacg caaattcggc tcaatatgag gcgagcgttt aagtaacgca
    11701 ttaaaagcgg tttcaatcag accaaaggta aattgcggga gcattaattg ttgttttaca
    11761 ttatttaaca ttcgtaccta cttaccctct tcacttttgg gagaaggata gattgttctt
    11821 cattaagaag caaaatcagg gagaggggta tttgcaaaat attgaataaa tatgaccgct
    11881 tgccccctct ctctgcttat ttcgctaaac gctcataagc ggtctctctc ccacaaaggg
    11941 agagagtcat ttaagagaaa actaaaattt ataacctctg tgtaatgcca caatgccggc
    12001 acttaagttg tagtaattca cgctttcaaa gccagtttgt tccatcattg cttttagctc
    12061 gtcttgtttc gggtgcattc ggatcgattc agctaaatag cggtaacttt cggcgtcatt
    12121 taccaccact tcgcccactt tcggcaaaat attgaatgag tagaaattat aaagctggct
    12181 gattgggtcg ataatcggtt ttgagaattc caacacaagt aagcgaccgc ccggttttag
    12241 cacgcggaac attgaacgta gggctttgtc tttgtcggta acattacgca agccaaaact
    12301 aatcacaata caatcaaaag tgttatcagc aaaaggcaag cattcggcat tcgcttgaac
    12361 gtagctcaca tttccaacca cgcctaaatt gcgtaatttt tcccgcccga cttccaacat
    12421 tgagctgtta atatcggcta aaatcacctc accactttca ccaacaatgc gagagaattt
    12481 tgcggtaaaa tcacccgtgc cgccggcaag atccagcact ttttgccctt tacgcacgcc
    12541 actgcaatca atggtaaagc gtttccacac tcgatgaatg ccgaaagaaa gcaaatcgtt
    12601 cattaggtca tatttgcctg ccaccgagtg aaacacattt gcgaccagtt gctgtttttc
    12661 ttctttcgct acggttttaa acccaaagtg ggtggtttct gccgattgtt gcacttcttg
    12721 ttgcacttca tctttaggtg ctaattgttc tacatcgctc attttcttgt ctctagttgc
    12781 aaaatttagg cgtaaccata gcaaaaaagc ggtcgttttt ctttaacttt ttgcaaattt
    12841 tcttaagtaa ataaccgctt tcttgactag aaaagccaaa ttctgtaaca ttcgcacact
    12901 attttttctt gaggattaca cattttggac agtcatagtc gatacttacc cgtttaacct
    12961 atcttgtcta acctcaatgt taccgacaag gtcggtaatg ctcgcctagt atctttgttc
    13021 ctttttgttc caagcctcct aactatttgg agctaaacat gatccgtgct tttggactag
    13081 ataacgcatg tttaatcagc gttgatgaaa ctaacccaac tttattaaat gatgcgattt
    13141 ggattgatct catcgatcca tcagaagctg aacgaaccgt attagaaaac cgcttagacc
    13201 aaacactcgc tgaagaacgt gaattggaag acttagaggc gtctgcccgt ttctttgaag
    13261 atgaagacgg tttgcacctg cactcgttct tttactgctt agatgatgac gattacgccg
    13321 atattgccac tgtcgccttc actattcgtg acgggcgttt gtttaccttg cgtgatcggg
    13381 atttacccgc atttcgcttg tatcgaatgc gttcccgccg tgagaaattg attgacagca
    13441 acgcctatga actcttactc gatttatttg agaccaaaat cgagcagctt gcagacgtaa
    13501 ttgaagaagt ctatgctgac ttagaaaaat taagtcgggt tattctaaac ggtcagcaag
    13561 aaaatgagaa tttcaatgat gccctttctc gcttaactga atttgaagat gcaagttcaa
    13621 aagtgcgttt atgtttgatg gatacgcaac gggcgttaag tttcttactg cgtaaaaccc
    13681 gtttgccgaa taatcagcta gaacaagccc gtgacattat gcgagatatt gaatctctgc
    13741 aaccgcacaa tgaatccttg ttccaaaaag tgaatttttt aatgcaagcg gcaatgggtt
    13801 atatcaatat tgagcagaac cgaattatga aattcttctc ggtggtgtca gtgatgttcc
    13861 tacctgctac gctggttgct tctacttacg gtatgaactt tgaatttatg ccggaacttc
    13921 atttccaata tggctaccct atggcgattg gtttaatgat tgttgccgcc tccgcccctt
    13981 atctttattt taaacgtaaa ggttggttat aatttatttt taaagcctat agttgaataa
    14041 cttaggcttt cttattttaa tgaatatgtt cacctctaaa aacaaataaa gattaaaact
    14101 gtttacctat tatttattca catatatact gtgagatatt cttttcatag gcaggagatc
    14161 tattatgcta agtaagctac aacgctttac cttaatgata aaaagcacca tcattaagca
    14221 tccactggaa attttattcg ttacttacgt cacgatttta cttatcaata atgtgagcga
    14281 ctacgaatta atcaaacgct ttcaaaatct aattgctctt tttcctattt gctttatttt
    14341 gctttacctg atacgcgata ccaaagctta ttggctattc gctccgattc cgatagcaat
    14401 cgtctttttc tttggtcaaa ttaatttaac attattggaa gattctcgtt attgggctac
    14461 catattttgt gtattccttt gtttgatcag tcaatattgg tacaaaaaca accattattt
    14521 tgtagccgga acaactaata aattagttaa cattgtcttt gctacagttt tatctggcat
    14581 tatttttgca acattaagcg ctattaccat agccattatt gctttatttg atttaaataa
    14641 acaaaacaac tttcatattt ttgaaaaatt tggcattttt tctagttttt gggcattccc
    14701 tgttttattt ttaactcttg aacaacagac taccaatgat tctagatatc taaaccgcat
    14761 tagtgaaatg ttactaaact ggattttgtc tccggcatta attatctata ctgcaattat
    14821 ttatgcttat gtaattttta ttgcggctaa ggggcaaatg ccagatgggg ttgttgcaaa
    14881 cgtagcgctt ccctatttag ctttcggcct agctatacaa gcggtgcaat tattactaaa
    14941 aaatgcaaaa tggcagtggt tttattctca ctttacctat ttagcacttt tgccgttaac
    15001 attaatttgg tatgccatct atattcgttt cagccattat ggcttaactg aagcccgtat
    15061 ttatttagtg attggcacaa taaccttatc tatttgctat accttattac tatttaaaca
    15121 gttggcgcaa tatcgtctct tttctgcagt gtcgatagca attattttaa tttcagtgtt
    15181 tattttagat ccgaaaacag ttgcgcttaa agatcaaacc aagcggttgg acaactattt
    15241 gctaaaacac aaattattag atgtaaataa caaaatcagc acaaaagctg tacttaaata
    15301 ccaagaatca ttaaatgaaa accgagatga agccgaatat ttttattcaa tgctccacta
    15361 tgttgccaga ggaatgcctg ctgcacaatt taaagagaaa tatggcgtaa attcaagcta
    15421 cgatttaatg agtgaaataa gagaaagaaa tactgaccca cgttattttg aagctactaa
    15481 ttctgagctg gttcgcttaa ctaaagcaga tatggcaaat gctcgtgaat atattacatt
    15541 tagtagccaa ttatatcggc ctaattcatt ttcccatcaa aaaatagaaa ataagctatg
    15601 ccaaaaactc ctttctcaag gttactattt tgagggaaat atattaaata ttgagtatca
    15661 atactcagaa acggctcaag actgctcttc aataacacaa gatcctactg aatttgttat
    15721 ctactttaaa ggacttggga ctactattga atttaacatt aacgatattt tgaaaaaaat
    15781 ctttgctaaa catcagttat ctattaccca gcaacacaaa aatgaggttt tagaaaagat
    15841 taaaggcgat ttactcaaaa tggatttagg aaattcagta cttgggctta agcatattga
    15901 gttaagattt gaagacaata tcggctatat agtagaaagt attagtacac aatatattat
    15961 gctgaaataa aaggagatgc tcgttcaatt aaatttgaac gagcattttt cgttaaaaac
    16021 tcaatttaag cagccactca aaattagtct catttaaccg atattgcggt ttcaaattcg
    16081 ggccgcaaga gtttgagcca atgccgctca ttttgtaatc gacacacagc acggtggaag
    16141 ggctttctac caaatcataa ctgtggcttt tagtggttag ctcttcctgt gtgtaaggcg
    16201 aaagattaaa actaaacggc tgtggagaag taacagttat cccatttgct tgcacataat
    16261 gcgtaccgaa atggctgccg ttttcctgcg gtttgagata atcggtatga ttttctcggg
    16321 cgctggtttg ataagctccg agtttcgcca aatggtattt gtcgatataa ctctcctgct
    16381 cgccatagcc aaaatagctc acttggttat tccgtttatt caagaaaaac cgcaagccaa
    16441 agcgaggtaa aaacggcaaa tgagcggggc gggttgcctg aacctgaatc gtcatttcgc
    16501 cattcggggc aagatgataa ttcactttca gggttaaaat ccgactttga gcggttgcca
    16561 caatgccaca ttcggcagta atgtttacgc cgtttttatc ttgcatcagt tcggtatgat
    16621 acgccctggt gtaacagtta tcgtagccgg cttttttcca aaactcacga attaagcggt
    16681 cgttatcggt tggggctcgc caaatattga aatccaacgg ttgctcaatt actgcctcgc
    16741 cgtttttctc aatccggctg aaaatgcctt tgagtttatc gaaagtgtag cgatagtcgc
    16801 cctgttgaat ccgccattca tttgcaaaat cttgcacaaa aatgaccgct tgcgggcgtg
    16861 gattaagtgc tggagtgacc atcgcttgat gcagcgtgat ttggtcaaag cctaagtgat
    16921 gccctttttc caacagagcc gtgctttcat ttaaagaata atcaagggtt aaaagttgca
    16981 atttgccgtt tggttcgggc agcgttagcg gcaaacaagc ggtctgattt ggctgacaat
    17041 ttaccaaaca ttgtccctgc agggtggttt cgccgttttc gctgaaacag taatgcacgg
    17101 tcagataatc agctaagtcg ctgaaatcca actgattttt cagccaaatt ttgcccgctt
    17161 ttaactcagc tcgcaccggg cgattcacat ttttcacttc taacaaatta gagtgtggca
    17221 cacgctgttg ggaaaccaag ccgtccatac agaaattgcc atcgtgcaag gtttcgccga
    17281 aatcaccgcc atagccgtat ttttcggtct tctgttcggc acttagctca gagttgggga
    17341 gcagaggagc atggtcgcac cattcccaca caaagccacc gcacgcaccg ctgtagcgtt
    17401 ggaaggtttg ccaataatct tccatatcac cactcgaatt gcccatcgcg tgagaatatt
    17461 cacacaaaat aaaaggtttg tggttggcag agtcggaaaa atattcctct aaccgctcgg
    17521 tgcttgggta catctcgctg tataaatcga ggtttgaaag atcgttttga tgtgccgaat
    17581 gttggtaaat cgaaccttcg tagtgagtta aacggcttgg atcccgttgt tttacccaac
    17641 gggctgcgac ttcaaaattt tcaccaaagc cggattcgtt accaagtgac caaataatga
    17701 ccgaagtgcg gtttttgtct cgctccacat tggcaatgtt gcgatctaaa atcgcctgtt
    17761 tgaacagcgg atctcttgca aaataacaga aattatcgac cgcttgttgg cgaatttctt
    17821 cctgtttgtt cgggtttggc acattcagga aaatgctgtt ttccggactt tcaatataca
    17881 ctgcactgga gccgtgagat tcaagatcac tttcggcaat cagataaaaa ccgagctgat
    17941 cgcacaattc actaaaccac ggagcgttcg ggtaatgggc ggtgcgaata gcgttgatgt
    18001 tatgggcttt cattaagcgt aaatccacca acgcttgctc acggctaatg ctgtagccgg
    18061 ttttcgggtc ggaatcgtgg cggtttaccc ctttaaattt aatcggggcg ttgttgaata
    18121 gcatcacgcc attttccaca cgaatctgac gaaagccgat tttttgctca ataatttcgt
    18181 tttggtagct caagcatagc gtgtagagtg tcggatcttc cgcattccac aaacacaaat
    18241 tgcaaatttc ttggcaaaaa tcaccgcttg tttgctcgca gactaagcgg ttttcagggt
    18301 cgaaaagttg aaaatgcaca gcttcggtgt aggtggaaaa ttgtgtttcc accttgagtt
    18361 ctgcctttga aagatcagcg tttaactggt agcggataaa gaaatcttgc aggtagtttt
    18421 gctcacgttc caaaatataa acatcacgga aaatgcctga cattcggaat ttgtcttgat
    18481 cttccaaata actgccgtca caccatttta gcaccaccac gacgaggctg tttttgccct
    18541 gtttaagctg tttggtgatg tcaaattcat tggtgctgtg gctgatttgc ccgtagccga
    18601 caaattcgcc gtttacataa acaaacaggc acgaatctac gccctcaaaa tttagcaaat
    18661 agcgtttgtt aggcttgggg ttaaacgtga tttcacgctg atacaccccg caagggtttt
    18721 ggtgtggcac ataaggcgga tcaaacggaa tcgggtagtt gatgttagtg tattgatggg
    18781 catcaaagcc ttgagtttgc cagttagacg gcacggggat ttggtgggta aatttggtgt
    18841 tgaggaaatc ctccggcaga tcgtgcggac ttggatagaa attaaacttc caatcgccat
    18901 ttagcaaagt aaataactca gattgttccc gttccaactg attcggcgtt tgccctttag
    18961 caaaaggaat aaaataagcg tggtgtagcg tggtattaag gtgcaacaca ctcgggtctt
    19021 ggtagtaatt cggtaacgac ataaaagccc tatgatcaaa aagatataaa tacgaataca
    19081 ctttaattct cttataaaat agggcaatca actatgtgaa aaattgtgag gcggatcaca
    19141 aaataatttc ctcacctttt tccttcgatt ccgttataat cacaagaatt ttttatgtca
    19201 tttttcaagg aatttaccaa tgttatatcc aagcgaagaa tttttatatg caccggttga
    19261 gtgggttgat cacagcgaag gttacaccga tattcgttac cataaatcaa aagacggtat
    19321 cgctaaaatc accattaatc gtccggaagt gcgtaatgct ttccgtccgc aaacggtaaa
    19381 agagatgatt gaagcctttt ctgatgcccg ttttgatgaa aaaatcggcg tcatcgtatt
    19441 aaccggtgaa ggcgaatatg cgttctgtgc cggcggcgac caaaaagtgc gtggcgatta
    19501 cggcggctac aaagatgaaa gcggtgtgca tcacttaaat gtgttggatt tccaacgtga
    19561 tattcgtacc tgcccgaaac cggtggtggc aatggttgcc ggctatgcga ttggtggtgg
    19621 acacgtttta catatgttat gtgatttaac cattgccgct gacaatgcaa aattcggtca
    19681 aaccggcccg aaagtggggt catttgacgg cggttggggt gcaagctata tggcacgttt
    19741 agtcggtcag aaaaaagcgc gtgaaatttg gttcttatgc cgtcaatata atgcacaaga
    19801 agcgttagat atgggcttaa tcaataccgt tgtgccttat gctgatttag aaaaagagac
    19861 tgtgcgttgg tgtcgcgaaa tgctacaaaa cagcccgatt gccttacgtt gcttaaaagc
    19921 agcattgaat gcagattgtg acggtcaggc tggcctgcaa gagcttgctg gtaatgcaac
    19981 aatgttgttc tatatgacag aagaagggca agaaggacgc aatgcgttca acgagaaacg
    20041 tgagccggac ttcagcaaat tccgccgcaa tccataattg acggcaaata caagcggttc
    20101 gattttgcaa aaaatttgca aaaatcgacc gcttaccttt tctaatttaa gttaatttta
    20161 tgtcagatgt tgagttaaac gagcagagcg agcaagagcc tgagcaaaaa ccgaaaaagc
    20221 gaaactattt cctttcaacc ttattcaaaa tcggggtgat aggagcttgc agtatggctt
    20281 tttacggcat ttatttagac ggtaaaatcc gtagcaaaat ggatgggcag atatgggaat
    20341 taccagctga ggtgtatgct cgtattgaaa gcattaaaat tgaagacaac ttaacgcttg
    20401 agcaaaccaa acaagcgttg ctggataacg gctatcgtca agtttctcaa gttgcgacac
    20461 caggcgattt caaaattgaa gaaaatcagc tggtgttgct acgccgagct ttcccgtttc
    20521 cagaaacacc ggaatcgcaa cgagtgcttc gtttaacttt caaacaagat aaattaactt
    20581 atattgaaga tttggtgcag ggtaagttga tcgaggagtt ccgcttggat ccgaaattac
    20641 tggcgttact gcattccgat agcgatgaag aacgtcaagc attacgctta caacaatacc
    20701 ctcgcttgtt aattgagtca ctgattttaa ccgaagatcg ccgcttttat cagcacgatg
    20761 ggattagccc aatcggtatt gcccgtgctt taatcactaa ctaccaagct ggcagaacag
    20821 tgcagggtgg cagtacctta acgcaacagt tagtgaaaaa cttgttctta agtaatgaaa
    20881 gatcgttggt gcgtaaggta aatgaagcgt taatgtcggt gattttagac ttccgttacg
    20941 ataaaaaccg cattttagaa acctatctca acgaaattta tttagggcag aacggtagct
    21001 accaaattca cggttttgca ttggcaagcc aattctattt tggtcgtccg atccaagaga
    21061 ttagcttaga ccaaattgcg ttattggtgg gaatggtaaa aggtccatca ctgtataacc
    21121 cgtggcgaaa tccgcaaggt gcggtagagc gacgtaatgt ggtgttgcga ttattgctgg
    21181 atcatcaagt gatcaatcaa gaactttacg ctctgttaag ctcccgcccg cttaatattc
    21241 gtgaaaaagg cacgatttac cgtgagcaac ctgcctttat gcaggcatta accattgatt
    21301 tgaaaaatga gttaggcgaa attaagtcag ctcaactttc cggtactaaa atttttacga
    21361 cccttgaccg taaacagcaa cgttcagccg aacaagcagt gattaccggt ttggaagatc
    21421 tggaaagtaa aaataaaaaa gtcagcgatt tgcaatcggc tattgtcgtg gcggaatacc
    21481 gcacaggtaa agtgagggcg atagtaggag accgcttaac ccaatttgcc ggctttaacc
    21541 gtgcgattca gtcaaaacgc caaatcggtt ctttagtcaa accatcggtt tatgcgattg
    21601 ccttggcaca gcctgaatta ttccgtttaa atacaccgat ccaaaataaa caaatttcaa
    21661 ttaaggttgg ttcaacctac tggacacccc gtaactacga ccgcagtttt agtggctcgg
    21721 tgatgttaat ggacgcctta gtccgctctc tgaatattcc aacggtgaat attggtatga
    21781 aagttggctt aaaaaaagtc attgccaaac aaaaagagat gggctgggat aatgcggaaa
    21841 ttccgcctta cccatcaacc ttgctaggtt catattcgat ctcgccttac gatgtaaccc
    21901 gctcttatca agtaattgcc aacgaagggc tgaaaacacc attaaccacc attgaggcga
    21961 ttatttcgca caatggcgaa atgttctatc agcgagatag cggcaaagtg agcgagcagg
    22021 tgcttccacc ggaagctgcg gttcaaacaa tgtatgcgat gcaacaggtt gtggaacgag
    22081 gtacggctcg tagcttacaa aacgattttg ccaaactgaa attagccggc aaaaccggta
    22141 caaccaataa cgctcgagat acttggtttg tgggaattga tggcgaacac gtcacaaccg
    22201 tctggctggg taaagataac aatggggata ccaacctcac cggttcaagt ggtgcattgt
    22261 atgtgtataa gcaatatctt gagagagcct tgcctcaggc gtatagatta ccgaaactta
    22321 atacgatgca atgggtgggg attaatagct atggtagctg gaattgcgat agtggcagac
    22381 aaattccagt ttggcgagat aaagggcaac gttattgtac cagtgcaggt aatgtagtgg
    22441 ctacagaaaa accaagtgtt tgggatgcac tttcgctgaa aaaagaaaat atcgaggcta
    22501 aagcagaaga agctgaaggg aagcaaccaa tccctactga agaagttgca ccaattgaat
    22561 aaaaataaat ttgatagcca ttatcattca agatacacaa gctgataga
//
LOCUS       DANMBQ010000024        20884 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.024, whole genome shotgun sequence.
ACCESSION   DANMBQ010000024 DANMBQ010000000
VERSION     DANMBQ010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20884
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.024"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(161..1510)
                     /locus_tag="PXE92_000834"
     CDS             complement(161..1510)
                     /locus_tag="PXE92_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL5760103.1"
                     /translation="MLLFIMFAAIILLLVLIMKFKVHAFVALIIVSLLTALAAGIPVD
                     KILPTLLNGFGSTLASVALLVGLGAMIGRLLEITGGAKVLADTLINKFGKERAPFALG
                     VASLLFGFPIFFDAGLVVMLPIIFSVAKQFGGSVLRYAFPSAGAFAVMHAFLPPHPGP
                     VASGDLLGVNMGLLVLVGLVCAIPTWYIGTYLFSQFISKRIHVDLPKAFLNGLSANEM
                     AVQNPPSFGKVLTVLVLPIILILFDTGLNTLSVAKVIDGSEMWVQSLRLIGKTPVALL
                     ITLIVAIMLLRDNRSFDQIEKICNNALGPICSIVLVTGAGGMFGGVLRASGIGDVLSE
                     MMKDTGMPIVVAAFIIATVFRVAQGSATVALTTTAALIAPTVAAATDLSQFDLCFIVI
                     AIASGATVLSHVNDSGFWLMSRFLEMDEKTTLKTWTMLETAIGLTGFACALIGSWLL"
     gene            1697..2212
                     /locus_tag="PXE92_000835"
     CDS             1697..2212
                     /locus_tag="PXE92_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HDL5760104.1"
                     /translation="MANGKAFILMGVSSTGKTSVGTAVAQRLGIKLIDGDDLHPRANI
                     LKMASGTPLNDADRTPWLERINDAVFSFEQKSEKGIIVCSALKKKYRDQIRQGNADVT
                     FLFLHGSFELVLARMQQRKGHFMKPEMLQSQFNTLEIPQADEPDVIFIDIDGSFDEVV
                     ERCVKAVEPLL"
     gene            complement(2266..3265)
                     /gene="gntR"
                     /locus_tag="PXE92_000836"
                     /pseudo
     CDS             complement(2266..3265)
                     /gene="gntR"
                     /locus_tag="PXE92_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674159.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
     gene            complement(3358..4518)
                     /locus_tag="PXE92_000837"
     CDS             complement(3358..4518)
                     /locus_tag="PXE92_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HDL5760105.1"
                     /translation="MIEQSYKIALLFNANKIYDRGVMQGIGQFIQASQCTWDIFVEDD
                     FVYHKNSIESLSIDGIIADFDDLETVELLKDIDVPIVAVGGSYQNPDYYPDLPYVATD
                     NYALVEAAFLHLKQKGINQFAFYGYPAETEKHWAIERKNAFIQLMEKYEHHPNCYIGD
                     QFHSDNWVELQAKLGEWLQTLPAHTGIIAVTDARARHLLQTCEHLKIAVPEQLCVIGI
                     DNEELIQYLSRVSLSSVTQGTSQIGYHAVKLLYRKLNNLPVSTKPILIPPVKVEERRS
                     TDYRSLQDPMVIQAMHFIRHRACQGIKVEQVLDHLKISRSNLEQRFKQEMNKTIHQVI
                     HEEKLARATYMLKFTEISTQEIANVCGYPSLQYFYAVFKKEFGKTPKEFRQE"
     gene            complement(4641..5027)
                     /gene="rplQ"
                     /locus_tag="PXE92_000838"
     CDS             complement(4641..5027)
                     /gene="rplQ"
                     /locus_tag="PXE92_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDL5760106.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMASALVEHEIIKTTLPKAKEL
                     RRVVEPLITLAKADSVANRRLAFARTRNVDTVAKLFNELGPRFAQRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRPEVATEAAAE"
     gene            complement(5063..6052)
                     /gene="rpoA"
                     /locus_tag="PXE92_000839"
     CDS             complement(5063..6052)
                     /gene="rpoA"
                     /locus_tag="PXE92_000839"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDL5760107.1"
                     /translation="MQGSVTEFLKPHLVNIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSSKEGVQEDILEVLLNLKGLAVKVQNKDDIILTL
                     NKSGIGPVTAADITHDGDVEIVNPDHVICHLTDKNASINMRIRVQRGRGYVPASARLH
                     TQNDDRPIGRLLVDARFSPVDRIAYNVEAARVEQRTDLDKLVIEMETNGTLDPEEAIR
                     RAATILAEQLAAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAETIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAED"
     gene            complement(6083..6709)
                     /gene="rpsD"
                     /locus_tag="PXE92_000840"
     CDS             complement(6083..6709)
                     /gene="rpsD"
                     /locus_tag="PXE92_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDL5760108.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG
                     ARKPRLSDYGSQLREKQKVRRIYGILERQFRNYYTEANRLKGNTGENLLVLLEGRLDN
                     VVYRMGFAATRAEARQLVSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKAS
                     LELATQREKPTWLEVDATKMEGVFKRRPERSDLSADINEHLIVELYSK"
     gene            complement(6738..7127)
                     /gene="rpsK"
                     /locus_tag="PXE92_000841"
     CDS             complement(6738..7127)
                     /gene="rpsK"
                     /locus_tag="PXE92_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDL5760109.1"
                     /translation="MAKTPVRARKRVKKQIADGVAHIHASFNNTIVTITDRQGNALAW
                     ATAGGSGFRGSRKSTPFAAQVAAERCAEMVKEFGLKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            complement(7144..7500)
                     /gene="rpsM"
                     /locus_tag="PXE92_000842"
     CDS             complement(7144..7500)
                     /gene="rpsM"
                     /locus_tag="PXE92_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDL5760110.1"
                     /translation="MARIAGINIPDQKHTVIALTAIYGIGKTRAKAICAATGIAEDVK
                     IRELSEEQIEKLREEVGKFTVEGDLRREVTLSIKRLLDLGCYRGLRHRRSLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            complement(7638..7751)
                     /gene="rpmJ"
                     /locus_tag="PXE92_000843"
     CDS             complement(7638..7751)
                     /gene="rpmJ"
                     /locus_tag="PXE92_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDL5760111.1"
                     /translation="MKVRASVKRMCRNCKVIKREGVVRVICSDPKHKQRQG"
     gene            complement(7776..9095)
                     /gene="secY"
                     /locus_tag="PXE92_000844"
     CDS             complement(7776..9095)
                     /gene="secY"
                     /locus_tag="PXE92_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDL5760112.1"
                     /translation="MAKQPGYQGSTQKGTGELKSRLLFVLGALIVFRIGSFIPVPGID
                     ASVLSELIRQQQGTIIDMFNMFSGGALSRASIFALGIMPYISASIIIQLLTAIHPPLA
                     ELKKEGEAGRRKISKYTRYGTLLLAFIQSIGISLALPNMVHGLVPNPSILFYVTSVVS
                     LVTGTMFLMWLGEQITERGIGNGISLIIFTGIVADLPATIGQTIEQARQGELSFIVLL
                     LVAIIAFAVTYFVVFVERGQRRIVVNYASRQQGRMMAPARTSHLPLKVNMAGVIPAIF
                     ASSIILFPASITQWFGQSEGFEWLFNLSQLLQPGQPLYVVLFTMAVIFFAFFYTGMQY
                     NPRDTADNLKKSGAFVPGYRPGEQTSRYIDKVMTRLTLIGALYIAFVCLVPYIITSLW
                     KVPFQLGGTSLLIVVVVIMDFIAQVQSHLMSQQYDSVLKKANLKGLN"
     gene            complement(9098..9532)
                     /gene="rplO"
                     /locus_tag="PXE92_000845"
     CDS             complement(9098..9532)
                     /gene="rplO"
                     /locus_tag="PXE92_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDL5760113.1"
                     /translation="MRLNSLSPAEGAKHSAKRLGRGIGSGLGKTGGRGHKGQKSRTGG
                     GVRRGFEGGQMPLYRRLPKFGFTSLKSFHVAEIRLNDLAKVDGNEVTLETLKAANIIT
                     KDILSAKVILAGKIERAVVVKGLRVTKGAKAAIEAAGGSIEE"
     gene            complement(9537..9713)
                     /gene="rpmD"
                     /locus_tag="PXE92_000846"
     CDS             complement(9537..9713)
                     /gene="rpmD"
                     /locus_tag="PXE92_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HDL5760114.1"
                     /translation="MAKIKVTQTRSSIARLPKHKATLKGLGLRHIRHTVELEDTPAVR
                     GMINQVSYMVKVEE"
     gene            complement(9720..10220)
                     /gene="rpsE"
                     /locus_tag="PXE92_000847"
     CDS             complement(9720..10220)
                     /gene="rpsE"
                     /locus_tag="PXE92_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDL5760115.1"
                     /translation="MSNIEKQAGELQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNG
                     RVGFGHGKAREVPAAIQKAMEKARRNMINVALNEGTLQHPVKGSHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALENMKSPEMVAAKRGKT
                     VEEILG"
     gene            complement(10235..10588)
                     /gene="rplR"
                     /locus_tag="PXE92_000848"
     CDS             complement(10235..10588)
                     /gene="rplR"
                     /locus_tag="PXE92_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDL5760116.1"
                     /translation="MDKKVARIRRASRARHLMREQGATRLVVHRTPRHIYAQVIAPNG
                     SEVLAAASTVEKVIKEQVKYTGNKEAAAVVGKIVAERAIAKGIKAVAFDRSGFKYHGR
                     VQSLADAAREAGLQF"
     gene            complement(10603..11136)
                     /gene="rplF"
                     /locus_tag="PXE92_000849"
     CDS             complement(10603..11136)
                     /gene="rplF"
                     /locus_tag="PXE92_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDL5760117.1"
                     /translation="MSRVAKAPVNIPAGVEVKLNGQLLTVKGKNGELSREIHNAVEVK
                     QEADALTFAPREGIANADAQAGTARALVNNMVIGVTEGFTKKLQLVGVGYRAQMKGNA
                     VALSLGFSHPVEHTLPAGVTGECPSQTEIILKSADKQLIGQVAADIRAYRKPEPYKGK
                     GVRYSDEVVRTKEAKKK"
     gene            complement(11153..11545)
                     /gene="rpsH"
                     /locus_tag="PXE92_000850"
     CDS             complement(11153..11545)
                     /gene="rpsH"
                     /locus_tag="PXE92_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDL5760118.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKVAISMPSSKLKVAIANVLAEEG
                     YIESVKVVEGVKPELEITLKYFQNKPVVESIQRVSRPGLRIYKRKDELPKVMGGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            complement(11582..11887)
                     /gene="rpsN"
                     /locus_tag="PXE92_000851"
     CDS             complement(11582..11887)
                     /gene="rpsN"
                     /locus_tag="PXE92_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HDL5760119.1"
                     /translation="MAKQSMIARDVKRAKLADKFYAKREELKKIISDVNASDEDRWAA
                     VLKLQTLPRDSSPIRQRNRCRQTGRPHGVLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            complement(11899..12438)
                     /gene="rplE"
                     /locus_tag="PXE92_000852"
     CDS             complement(11899..12438)
                     /gene="rplE"
                     /locus_tag="PXE92_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDL5760120.1"
                     /translation="MAKLHDYYRDTVVNELKAKFNYSSVMQVPRIEKITLNMGVGEAL
                     TDKKLLDNAVADLAAISGQKPLVTKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLNAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTSA
                     KTDEEGQALLAAFNFPFRK"
     gene            complement(12456..12767)
                     /gene="rplX"
                     /locus_tag="PXE92_000853"
     CDS             complement(12456..12767)
                     /gene="rplX"
                     /locus_tag="PXE92_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDL5760121.1"
                     /translation="MAAKIRQNDEVIVLTGKDKGKRGKVTKVLPNGKVFVEGINIITK
                     HEKPVPALGKAGGLVKKEAAIDVSNVAIFNPETNKADRVGFRFEDGKKVRFFKSNEKT
                     I"
     gene            complement(12778..13149)
                     /gene="rplN"
                     /locus_tag="PXE92_000854"
     CDS             complement(12778..13149)
                     /gene="rplN"
                     /locus_tag="PXE92_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDL5760122.1"
                     /translation="MIQEQTMLDVADNSGARSVMCIKVLGGSHRRYAAIGDIIKVTVK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGAVIRFDGNACVILNNNTEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
     gene            complement(13372..15207)
                     /gene="glmS"
                     /locus_tag="PXE92_000855"
     CDS             complement(13372..15207)
                     /gene="glmS"
                     /locus_tag="PXE92_000855"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDL5760123.1"
                     /translation="MCGIVGAVAQRDIAEILVDGLHRLEYRGYDSAGVAVLNADDKTM
                     QIVRRVGKVKALDEALDTKPLLGGTGIAHTRWATHGEPSETNAHPHRSGKIAVVHNGI
                     IENYEELKIVLQERGYVFQSQTDTEVIAHLVEWELRSASSLLEAVQKTVVQLRGAYGT
                     VVLNEEEPEHLIVARSGSPLVIGYGVGENFLASDPLALLSVTRRFAYLEEGDVAEITR
                     RTVDIYDREGNKAEREIHEGNFEADAADKGQYRHYMQKEIFEQPVAIMNTLDGRIKDG
                     KVDISAIAPNAAEILSKVEHVQIVACGTSYNAGMVSRYWFESIAGVSCDVEIASEFRY
                     RKFVTRPNSLLITLSQSGETADTLAALRLAKESGYMAAMTVCNVASSSLVRESDFAFL
                     TKAGVEIGVASTKAFTTQLTCLLLLNVAIGRLQGRMSEEQEHHIVQSLQRLPAQIESA
                     LVFDKQIEKLSEDFADKHHTLFLGRGEYYPVAMESALKLKEISYIHAEAYAAGELKHG
                     PLALIDSDMPVVVVAPENDLLEKVKSNIEEVRARGGQLYVFADHDAGFEEAEGFKTIV
                     MPKVDEVTAPIFYTVPLQLLSYHIALIKGTDVDQPRNLAKAVTVE"
     gene            complement(15255..16016)
                     /locus_tag="PXE92_000856"
     CDS             complement(15255..16016)
                     /locus_tag="PXE92_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
                     /protein_id="HDL5760124.1"
                     /translation="MSKRNTQQRRHLIVQMVQEKNEVSVDELAHFFETSEVTIRKDLT
                     ALEESGFLLRKYGGAVKIPSEMMEEAFIEQLSIQKKMIAQAARDCIRDHNRIIIDSGS
                     TTGALVKALNQTGLVVMTNSLNLATELTSLECEPTVLMTGGTWDSRSESFQGKVAEQV
                     LRSYDFDQLFIGADGLDLARGTTTFNELVGLSQVMAEVSREVIVLIESQKIGRKMPNI
                     ELKWQNITKIITDSQLSFETKEQIEKMGVEVVIAK"
     gene            complement(16173..16373)
                     /locus_tag="PXE92_000857"
     CDS             complement(16173..16373)
                     /locus_tag="PXE92_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL5760125.1"
                     /translation="MKSILKVVGAMVLMVAVSGCNNMTKTQRNTAIGAAIGGVAGHAI
                     GESTGATLGGAALGGVIGSQIK"
     gene            16598..17632
                     /locus_tag="PXE92_000858"
     CDS             16598..17632
                     /locus_tag="PXE92_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5760126.1"
                     /translation="MKLKKLSLALSTLLLGSAFANSALAEGRLTVYCSATNELCEQEV
                     QAFGKKYNVKVAFVRNGSGSTLAKIEAEKNNPQADVWYGGTLDPHSQAAEMGLLEPYK
                     SPNLEQIIEKFRDPAKLKGNYSSAVYMGILGYGVNLDRIKKLGIEKVPSTWEDLLDPR
                     LAGEIQIADPQSSGTAYTAIATFVQLLGEEKAFDYFRKLHKNISQYTKSGITPARNTA
                     RGETAIGIGFLHDYAIEKKNGANIEMTAPTDGTGYELGGVSILKGARNLDNAKLFVDW
                     SLSKEAQELSWQKGNAFQVLTNTTAESSPYALDPKNLNLINYDFEKYGSSEERKRLID
                     KWVNEVKLAK"
     gene            17700..19630
                     /locus_tag="PXE92_000859"
                     /pseudo
     CDS             17700..19630
                     /locus_tag="PXE92_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016534092.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
     gene            19728..20777
                     /gene="fbpC"
                     /locus_tag="PXE92_000860"
     CDS             19728..20777
                     /gene="fbpC"
                     /locus_tag="PXE92_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric ABC transporter ATP-binding protein"
                     /protein_id="HDL5760127.1"
                     /translation="MNNDFLVLKNVTKSFGKVTVIDNLNLSIPQGKMVTLLGPSGCGK
                     TTVLRLVAGLENPTSGQIFIDGEDVTQSSIQHRDICIVFQSYALFPHMSIGDNVGYGL
                     KMQGVPKEERLQRVKEALELVDLGGFEDRFVDQISGGQQQRVALARALILKPKVLLFD
                     EPLSNLDANLRRSMREKIRELQQRLNITSLYVTHDQSEAFAVSDEVIVMNKGKIMQKA
                     PAKELYLRPNSLFLANFMGESSIFEGTIAGNQININGYQFTLANAEQFELPDGEYLVG
                     IRPEAIHLAEQGNISQLCKIKNAVYMGNHWEIIAEWEGKDLLVNTKPENFYPHIKQAY
                     VHFIEQGVFLLKKEL"
BASE COUNT         5907 a         4666 c         4137 g         6174 t
ORIGIN      
        1 taatgcagca gaaaggtttt ggaataattt acaaaatatt cagtttataa atgaagatat
       61 attaaataaa ccctaacatt ctataataag aaaaagcggt cgattctctg ccaaattttg
      121 caaattttag aagaaaacag accgcttgtc agggttggaa ttagagtaac cagctgccaa
      181 tcaatgcaca ggcaaaaccg gttaaaccga tggcagtttc aagcattgtc cacgttttga
      241 gggtagtttt ttcgtccatt tcaaggaaac ggctcatcag ccagaaaccg gagtcattga
      301 cgtgggaaag caccgtcgca ccggaggcga tagcaatcac gataaaacag aggtcgaact
      361 ggcttaaatc agtcgctgcc gccacagttg gcgcaatcaa cgctgctgtg gtggttaaag
      421 caacggttgc cgagccttgt gcgacacgga ataccgtagc aataataaag gcggcaacca
      481 caatcggcat tccggtgtct ttcatcattt ccgataatac atcgccaatc ccgctggcac
      541 gcaacacgcc accaaacatt ccgcctgcac cggttactaa gacaatcgag cagattgggc
      601 caagggcatt gttacagatt ttttcgattt ggtcgaaact gcgattatcc cgcaacagca
      661 taatcgccac aattaaggta atcagtaaag caacaggggt tttgccgatt aagcgaaggc
      721 tctgcaccca catttcactg ccatcaatca ctttagcaac ggagagggta ttcaagccgg
      781 tatcaaacaa aatcaggata atcggcagca ccaacaccgt gagtaccttg ccaaaacttg
      841 gcgggttttg tactgccatt tcgtttgccg ataagccgtt taaaaacgct ttcggcaaat
      901 caacgtgaat gcgtttgctg ataaattggc tgaacaggta agtgccgata taccacgttg
      961 ggattgcaca aaccaagccc accaagacta acagccccat attcacacca agcagatcgc
     1021 cggaggcaac cgggccgggg tgcggaggta gaaaggcgtg cattaccgca aacgcaccgg
     1081 cagacggaaa cgcatagcgc aacaccgaac cgccgaactg ttttgccacg ctaaaaataa
     1141 tcggtaacat caccaccaag ccggcatcaa agaaaatcgg gaagccgaat aacagcgagg
     1201 caacgcccaa cgcaaaaggc gcacgttctt tgccgaattt attgataagc gtatccgcaa
     1261 gcactttcgc cccgccggtg atttcaagca agcgaccaat catcgcccca agccccacca
     1321 gtaacgccac tgatgccagc gtactaccaa aaccattcaa caatgttggc aggattttat
     1381 ctaccggaat accggcagct aatgcagtga gcaggctcac aataatcaat gccacaaaag
     1441 cgtggacttt aaatttcata atcagcacca gcaataaaat gatggcagca aacataatga
     1501 acagtaacat aggatctcct aaggttgaat tgttatcggt aacataacca aaaagcagtt
     1561 tagagtaaac ggttgcaggg cttttatttt aaaaatgtga tctacttcaa gttttctgga
     1621 aatagcagat gatttttcag cataacctgt tacattaacg gctaagttaa cgttaccagt
     1681 aacacaagga aattcaatgg caaacggcaa agcatttatt ttgatgggcg tgtccagcac
     1741 cggcaaaacc agcgtgggaa cggcagtcgc acagcggttg ggaataaaat tgattgatgg
     1801 ggacgactta caccctcgtg ccaatatact gaaaatggca agtggcacgc cactcaatga
     1861 tgcagatcgc acaccgtggt tggagcggat taacgatgca gtgttcagtt ttgaacaaaa
     1921 aagcgaaaaa gggattatcg tctgctcagc attgaagaaa aagtaccgag accagatccg
     1981 acaaggcaat gccgatgtga cttttctatt cttgcacggc tcgtttgaac tggtgctggc
     2041 tcgaatgcaa caacgcaaag ggcattttat gaaaccggaa atgcttcaaa gccaatttaa
     2101 tacgctggaa attccgcagg cagacgaacc agatgtgata tttattgata ttgacggcag
     2161 ttttgacgag gtggtggagc gttgcgtgaa agcagttgag ccgttgcttt aatcacaagt
     2221 ggtggatttt gcggattttt ttgcaaattt aaccgcttgt ccgggctaca cactttcccc
     2281 caaatggatc tgatagccca agttaattat ggagctttgt tgtggtacgc cgtgaatacg
     2341 gttgagcagc tcttgggcgg caactctgcc tatttcaagg cgaggtgtga tgacgctggc
     2401 aagctgtggc gtgagggatt gcccgacatc gtgtccgtga aagccggcga ttttaatctg
     2461 ctgcggcaca tgaatgccta accgttggca ctcaaataat gccccgattg ccaaatcgtc
     2521 attggtgcaa aaaatgccgt ctagctgcgg aatgtgttgc agggcttgtt ttagctggct
     2581 tgcgccaagc gtgaaagaag aatgctctgc agtagtaatg ctgtgtgggc ttaagccgtg
     2641 tttgagcatt gcctgttcgt agccctgcat tttcagctga gagcgtttat ccattctcgc
     2701 cccgaaatac accacctgtc ggcagcctcg atgaatcatt gtctcgacca ttgcttgagc
     2761 cgcagaaata ttgtcaatat ccgaccgctt gttgaatgcc acattcgccg ctttccatta
     2821 tctcaatcac cggaatattc gccacttcca gcattttcaa ggtgcggggc gagtggtgat
     2881 tttccgataa gataatgccg tcaatattgt acgaaagcag cgactcaatc cgctgctctt
     2941 ccttttgttc gctgtaacca tagtgggcga gcatggtttg atagctggct tggtcggtaa
     3001 tctgctcaat gcctttaatc acatcggcaa acacttgatt ggtaagcgaa ggaaccagca
     3061 cgccaattgc acggcttttg gcattcgaga gaatatccgg tgcacggttt gggatatagc
     3121 caaacagctc aatcgcttgt gcaatccgct cgccggtctc cttggcaacg gtgtttggat
     3181 cccgcaaaaa gcgactgacc gtcattttgg taatgccgag atgggtagcg atgtcttgca
     3241 aagttgggcg tttcggtttt ctcattggaa tagataacga aaaaatttaa tttcgctgat
     3301 tataactgaa gataaggcaa taattgcaaa atattcggtg aaattgaccg cttgttacta
     3361 ctcttgcctg aactctttcg gggttttacc aaactctttt ttaaacacgg catagaaata
     3421 ttgtaaagag ggataaccgc acacattggc aatttcttgg gtcgaaatct cggtaaattt
     3481 gagcatatat gttgctcttg ctaatttttc ctcgtgaatc acctggtgaa ttgtcttatt
     3541 catttcctgc ttaaaacgct gttcaaggtt agagcgggaa attttaagat gatccagtac
     3601 ttgctctact ttaatgcctt ggcaagctcg gtgacgaata aagtgcatag cttggattac
     3661 cattgggtct tgcaaagaac gataatcggt cgaacggcgt tcttccactt ttaccggcgg
     3721 gattaaaatc ggcttggttg aaaccggtag attatttaat tttcgatata ataacttcac
     3781 agcgtgatag ccgatttgtg atgttccttg tgtgactgaa gaaagagaaa cccgagagag
     3841 gtattgaatc aactcttcgt tatcaatgcc gatcacgcaa agttgttcag gtacagcgat
     3901 ttttaaatgc tcacaggttt gaagcaggtg tcttgccctt gcgtcagtaa cggcaataat
     3961 gcccgtgtgg gctggtaagg tttgtaacca ctcgcctaat ttggcttgta attcaaccca
     4021 attatctgaa tgaaattgat caccaatata acaatttggg tgatgttcat atttttccat
     4081 caactgaata aaggcatttt ttcgctctat cgcccaatgt ttttccgttt ctgcaggata
     4141 gccgtaaaac gcaaattggt tgattccttt ttgttttagg tgtaaaaatg ctgcctcaac
     4201 taaggcgtaa ttgtcggtag caacataagg aaggtcaggg taatagtcag ggttttggta
     4261 agaaccgcct actgctacaa tggggacgtc aatatcttta agtagctcaa ctgtttccaa
     4321 atcgtcaaaa tcggcaataa tgccgtcaat cgacaggctt tcgatactat ttttatgata
     4381 gacaaaatca tcttccacaa aaatatccca agtacattgt gatgcttgaa taaactgccc
     4441 aatgccctgc attactcctc tgtcataaat tttgttagca ttaaaaagta aggcaatttt
     4501 ataagattgt tctatcatta cttcctccag tacccacttt caaaagtaac tataaaataa
     4561 aattattttt tgatcaaaac gaataaaaga ataaaacccc ggtatttcta ccagggtttt
     4621 aagctcaatt ttgattaaga ttattccgca gctgcttcag ttgcaacttc tgggcgatcc
     4681 actaactcaa tgtaagccat tggagcatta tcacctgcac ggaaaccaca ttttaaaatg
     4741 cgagtgtaac cacccgcacg ttgtgcaaaa cgtggaccta attcattgaa taatttagca
     4801 actgtatcaa cgttgcgtgt acgggcaaaa gctaaacggc gatttgcaac gctgtctgct
     4861 ttagctaaag taattaacgg ctcaactaca cggcgtaact ctttcgcttt tggtaaagtt
     4921 gtcttgatga tttcgtgttc aacaagcgca cttgccatat tacggaacat cgcttggcga
     4981 tggctgctgt tacggtttaa ttgacgtcca ctcttacgat ggcgcataac ctattccttc
     5041 ttagaaaatc tataccgaaa aactagtctt ctgcaatact tgcaggtggc cagttttcaa
     5101 ggcgcatacc gagtgataaa ccacgagaag caagaacatc cttaatctct gtaagagatt
     5161 ttttacccaa gttcggggtt ttaagaagtt caacttctgt acgttgtact aaatcaccga
     5221 tatagtgaat tgtctctgct ttcaaacagt tagcagaacg aactgtcagc tctaggtcat
     5281 ctactggacg aagaagaata ggatcaaatt ccggtttttc ttctttcact tcaggttgac
     5341 gaacatcacg caaatcaacg aatgcagcaa gttgttctgc taaaatcgtt gcagcacgac
     5401 ggatagcttc ttcaggatct aacgttccgt tagtttccat ctcaataaca agtttatcta
     5461 agtctgtacg ttgttcaaca cgagcagctt cgacattgta agcaatgcga tctacaggtg
     5521 aaaaacgtgc atctactaat aaacgaccga tagggcggtc atcgttttga gtatgaagac
     5581 gtgctgatgc aggaacataa cctcgaccac gttgaacacg aatgcgcata ttaattgatg
     5641 cattcttatc tgttaaatga cagattacgt gatcaggatt cacaatttct acatcgccat
     5701 cgtgtgtgat gtcggctgca gttacagggc caattccaga tttatttagt gtcaaaataa
     5761 tatcatcttt attttgcact tttaccgcta gacctttaag gtttaataat acctcaagaa
     5821 tatcttcctg aacgccttct ttgctgctgt actcatgcag tacaccatca atttcaactt
     5881 cagtaactgc acaacccggc atagatgaaa gtaaaatgcg gcgaagtgcg ttacctaatg
     5941 tatggccaaa accacgctct aacggctcta atgtcacttt agcatgagtt gaactaactt
     6001 gttcaatatt tactaagtgc ggctttaaaa attctgtcac agaaccctgc attttttcct
     6061 ctctttgcgg ttaagctaac tattatttag agtaaagctc aacgatcaga tgttcattaa
     6121 tatctgctga tagatcagaa cgctctggac gacgtttaaa tacgccttcc attttagttg
     6181 catcaacttc taaccaagtt ggtttttcac gttgagttgc taattctaat gatgctttaa
     6241 tacgtgcttg ttttttcgat ttttcacgaa cagcaacaac atcatcaaca gaaacttgga
     6301 atgaaggaat gtttactaca cgaccgttta ctacgattga tttatggcta acaagctgac
     6361 gtgcttctgc acgtgttgct gcaaaaccca tacgataaac tacgttatct aaacgacctt
     6421 ccaataatac tagtaagttt tcaccggtat taccttttaa gcggttcgct tctgtataat
     6481 aattacggaa ttgacgctct aagataccat aaatacggcg aactttttgt ttttcacgta
     6541 attgactacc atagtcagat aaacgtggct tgcgagcacc atgttgacca ggcgctacat
     6601 caagtctatt tctacatttt gattcaatcg cacgaacgcc tgattttaag aataaatcag
     6661 taccttcacg acggcttagc ttgagcttag gacccaaata tcttgccatt ttctttctcc
     6721 aattctttta acgtcaatta aacacgacgt tttttcggtg gacgacaacc gttatgtgga
     6781 atcggagtca catcagtaat attcgtgata cggaaacctg ctgcatttaa tgcacggatt
     6841 gttgactcac gacctggacc cggtccttta accataactt ccaaattctt taaaccaaac
     6901 tctttaacca tttctgcaca acgctctgca gcaacttgag cagcgaatgg agtcgattta
     6961 cgagaaccac ggaaacctga accacctgca gttgcccaag ctagagcatt accttgacgg
     7021 tcagtaatag taacgattgt gttattgaaa gatgcgtgga tatgagctac gccatctgca
     7081 atctgttttt ttacgcgctt acgtgcgcga actggtgttt tagccattat ttatctactc
     7141 cgactatttt ttgatcggtt tgcgtggacc tttacgggta cgcgcattag tcttagtacg
     7201 ttgaccacgt accggtaaac tacgacgatg acgtaaacca cggtagcaac ctaagtctaa
     7261 aagacgtttg atgcttaaag ttacttcacg acgtaaatcc ccttcgacag taaatttacc
     7321 aacttcttca cgcagttttt caatctgctc ttcagacaat tctctgatct ttacatcttc
     7381 agcaataccc gttgcagcac agatggcttt tgcacgagtt ttaccgatac cgtaaattgc
     7441 agttaatgcg attacagtgt gtttttgatc aggaatgtta atgcctgcaa tacgggccac
     7501 tatgcactcc tattatttaa gtttattgat atactgatct tgaaaagccc gtttcaggat
     7561 actcaaacag tatatcagga cgaatgagct gagcagtata actgctcagc gggttctttg
     7621 caagaaatat gcgtaaatta accttgacgt tgtttgtgtt taggatcgct acaaattaca
     7681 cgaaccacac cttcacgttt gattacttta caattacggc acattctttt tactgaagca
     7741 cgaactttca ttgcttatcc tttattaacg gcctattaat ttagaccttt taagttagct
     7801 ttcttcaaca cagaatcata ttgttgagac attaaatgac tctgaacctg tgcgatgaaa
     7861 tccataataa caaccactac aatcaataat gatgtaccac ctaattggaa tggcaccttc
     7921 cataacgacg taatgatgta aggaaccaaa caaacaaaag caatatataa cgcaccaatt
     7981 aaggttaaac gtgtcattac tttatcgata taacgagatg tttgttcgcc tggtcggtaa
     8041 cctggtacaa acgcacctga tttcttaaga ttatccgctg tatcacgagg attatactgc
     8101 attcctgtat aaaagaaagc aaagaaaatc actgccattg tgaataatac aacatacagt
     8161 ggttgacctg gctgtaatag ttgtgaaagg ttaaataacc actcaaatcc ttcgctttga
     8221 ccaaaccatt gagtaatgct tgccgggaat aaaataatac ttgaagcaaa aattgccggt
     8281 attacccctg ccatattcac ttttaatggt aagtgagaag ttcttgcagg cgccatcatt
     8341 cgaccttgtt ggcgacttgc atagtttaca actattcttc tttgtccacg ttcaacaaaa
     8401 acaacaaaat aagttactgc aaatgcaatt attgcaacta gtagtaagac gataaatgat
     8461 aactcgcctt gacgggcttg ttctattgtc tgccctatcg ttgctggaag atctgcaaca
     8521 atacctgtaa aaataatcaa tgagataccg tttccgatac cacgctcagt gatttgttcg
     8581 cctagccaca ttaggaacat tgttcctgtc actaagctta ctacagaggt tacatagaat
     8641 aatatacttg gattaggaac taatccatgt accatattcg gtagggctag tgaaatacca
     8701 atagattgaa taaatgctaa taacagtgtg ccatagcgtg tatatttact gattttccga
     8761 cgacctgctt caccttcttt ctttaattca gctagaggtg ggtgaatcgc tgtcaataat
     8821 tggataataa ttgacgctga aatataaggc ataataccta gtgcaaatat agatgcacgg
     8881 cttaaagcac caccagagaa catattaaac atatcaatga tggtgccttg ctgttgtcga
     8941 attaattcgg ataatacaga agcatcaatg ccaggaacag gtataaaaga accgatacgg
     9001 aaaacgatta acgcacctaa aacaaacaat agtcttgatt taagctcgcc agtccctttt
     9061 tgtgtactac cttggtaccc tggttgcttt gccatcttta ttcctcgata gaaccgccag
     9121 cagcttcaat agcagcttta gcgcctttag ttacacgtaa gcctttaaca actactgctc
     9181 tttcaatttt gcctgctaaa attactttag cagataaaat atctttagta atgatgtttg
     9241 ctgcttttaa tgtctctaaa gttacttcgt tgccatctac tttagctaag tcgtttaaac
     9301 gaatttcagc cacatggaat gattttaatg aagtaaaacc aaattttggc aaacgacgat
     9361 ataaaggcat ttgaccaccc tcgaaaccac gacgaacacc gccgcctgta cgagattttt
     9421 gacctttatg accgcgccca ccagttttac ctaaaccaga accaatacca cgacctagac
     9481 gttttgcact gtgcttagca ccttcagctg gagaaagaga atttaaacgc attctattac
     9541 tcctctactt taaccatata agacacttga ttgatcatac cacgcactgc tggtgtatct
     9601 tcaagttcta cagtatgacg aatatgacga agacctaagc cttttaacgt tgctttatgt
     9661 ttcggtaaac gagcgataga gctacgagtt tgagttactt taatttttgc catatccaat
     9721 taccccaaaa tttcttcaac tgttttgcca cgttttgcag caaccatttc aggtgatttc
     9781 atgttctcaa gtgcatcgat tgttgcacga acaacgttaa ttgggttagt tgaaccatac
     9841 gctttagaaa gaacgttacg aacacccgca acttctaata ctgcacgcat tgcaccacca
     9901 gcgatgatac ctgtaccttc acttgctggt tgcataaata cgcgtgaacc tgtatgtgaa
     9961 cctttaactg gatgttgtaa tgtaccttca tttaaagcta cattaatcat attgcgacga
    10021 gctttttcca tcgctttttg gattgctgct ggaacttcac gtgctttacc gtgaccaaaa
    10081 cctacacgac cgttaccatc gcccactact gttaaagcag tgaaactcat aatacgacca
    10141 ccttttacgg tttttgaaac acggttaacc gcgattagct tttcctgcag ttcaccagct
    10201 tgtttttcga tgtttgacat ctcaaattcc tctattagaa ctgtagacca gcttcacgag
    10261 cagcatctgc taatgattgc acacgaccgt ggtatttaaa accagaacgg tcaaaagcaa
    10321 ccgctttaat acctttggca attgcacgct cagcaacgat tttacccact actgctgcgg
    10381 cttctttatt gccggtatat ttaacttgct ctttaattac tttttcaaca gttgaagctg
    10441 ctgctagtac ttctgagcca ttaggtgcaa tcacctgcgc atagatatgg cgaggtgtgc
    10501 gatgcacaac taaacgtgtt gcaccttgct ctctcattaa atgacgtgca cggcttgcac
    10561 gacggatacg agctactttc ttatccatag tgttacctta ctttactttt tcttcgcttc
    10621 ttttgtacgc actacttcat cagagtaacg tacaccttta cctttataag gttcaggttt
    10681 gcgatatgca cgaatatctg ctgccacttg accaattaac tgtttgtcag cacttttcag
    10741 aataatttct gtttgtgatg gacattcacc agttacgcct gctggcaacg tgtgttctac
    10801 tgggtgagag aaacctaaac ttaaagcaac agcattgcct ttcatttgtg ctctataacc
    10861 aacacccact aattgcaatt tcttagtaaa gccttcagta accccgatta ccatattatt
    10921 tactagtgca cgagcagtac ctgcttgagc atctgcatta gcgatacctt cacgtggagc
    10981 gaaagttaat gcatctgctt cttgttttac ttcaactgca ttgtgaattt cacgagataa
    11041 ctcgccgttt ttacctttaa ctgttaatag ctgaccgtta agttttacct caacaccggc
    11101 aggaatatta acaggtgctt ttgcaacacg agacattttt cctacctctc tattatgcta
    11161 cgtaacagat aatttcaccg ccgaggcccg cttgacgcgc agcacggtcg gtcattacac
    11221 ctttagatgt agaaacaact gcgataccta aaccacccat tacttttggt aattcgtctt
    11281 tgcgtttata aatacgcaga cccggacggc tcacacgttg gatactttct acaaccggtt
    11341 tgttttggaa atattttaaa gtaatttcca gttcaggttt aacaccttca acaactttaa
    11401 cgctttcgat ataaccttct tcagctaaaa catttgcaat agcaactttt aacttagatg
    11461 aaggcatact gattgcaact ttgttcgcag cttgaccgtt acgaatacgg gtcagcatat
    11521 ctgcgattgg atcttgcatg ctcatgtatt tactcccatg attccaaatt aaaagaggtt
    11581 attaccagct tgccttctta agacccggaa tttcaccgcg catagcagct tcacgaacct
    11641 taatacggct taaaccaaac ttacgaagta cgccatgtgg acgaccagtt tggcggcaac
    11701 gattacgctg acggattggg ctagaatcac gaggaagtgt ttgtaatttt aacactgctg
    11761 cccaacggtc ttcatcagat gcattcacat cagagatgat tttctttaat tcttcacgtt
    11821 ttgcgtagaa tttatcagct aatttagcac gttttacatc gcgtgcgatc attgattgtt
    11881 ttgccacgat aacctacctt atttacggaa tgggaaattg aaagcagcta ataaagcttg
    11941 accttcttca tcagttttcg ctgaggtggt gatagtaata tctaaaccac gaacacgatc
    12001 tactttatcg tagtcgattt cagggaaaat gatttgttca cgaacaccca tactgtaatt
    12061 accacgacca tcgaatgact tagcgtttaa accgcggaag tcacgaatac gtggaacagc
    12121 gatagtaatc aatctttcaa agaattccca catacgttca ccacgtaggg ttactttgca
    12181 accgattgga tacccttgac ggattttaaa gcctgcaaca gatttgcgag ctttagttac
    12241 taaaggtttt tgaccgctga ttgctgctaa atccgctact gcgttatcta acagtttttt
    12301 gtcggtcaat gcttcaccca cacccatgtt aagggtaatc ttttcgattc gtgggacttg
    12361 catgacagat gagtagttga attttgcttt taattcatta actactgtat ctctgtagta
    12421 atcatgcagt ttcgccatca cattactcca gttaattaaa ttgttttctc gttagatttg
    12481 aagaaacgca cttttttgcc atcttcgaat ctaaatccta cacggtcagc tttgttggtt
    12541 tcagggttga agatcgcaac gtttgaaaca tcgattgcag cttctttctt cactaaacca
    12601 ccagctttgc ctaatgcagg aactggtttt tcgtgtttag tgatgatgtt gataccctca
    12661 acaaaaactt taccatttgg taacacttta gttaccttac cacgtttgcc cttatcttta
    12721 ccggtaagaa caattacttc atcgttttga cggatttttg cagccattac attctcctta
    12781 tagtacttct ggagctaaag agatgatttt cataaacttc tcagaacgaa gttcacgagt
    12841 caccggtcca aaaatacgag taccgattgg ttgctcagtg ttattgttta aaattacaca
    12901 agcattgcca tcgaaacgaa taactgcgcc atctgggcga cgaacaccct tcttggtgcg
    12961 cacaacaact gcttttaaca catcaccttt tttcacttta ccgcgtggaa ttgcttcttt
    13021 tacagtaact ttaatgatat cgccaatagc agcgtaacga cggtgcgatc cacctagaac
    13081 cttgatacac attacgctac gagcccctga gttatcagca acatccagca tagtctgttc
    13141 ttggatcata ttagtgctcc gttaaaataa aaaaacaccc tttcgggacg aacctattta
    13201 tacaaatata aatagggtgc aaaatatact acaaaaacca ctagttaatc aagtgaattt
    13261 ttaagctaat ttaatagttt aagtaagctt atttataaat tgtttcaact atcaataaac
    13321 tgtcctataa ctcatataaa aaccccaaga tatcttgggg tttaactaac attactctac
    13381 agtcaccgct tttgcaaggt tacgaggttg gtcaacgtcc gttcctttga ttaaggcaat
    13441 gtgatatgaa agtagttgta acggcacggt gtagaaaatc ggtgcggtta cttcatcaac
    13501 tttcggcatt acaatcgttt tgaagccttc tgcttcttca aaacctgcat cgtgatcggc
    13561 aaacacatat aactgaccgc ctcttgcacg cacttcttca atattggatt tcactttctc
    13621 aagcaagtca ttttccggtg ctaccaccac taccggcata tcgctatcaa ttaatgctaa
    13681 cgggccgtgt tttaactcgc ctgcggcata agcttctgcg tgaatatatg aaatctcttt
    13741 taatttcaat gcagattcca tcgcaaccgg gtaatattct ccacgaccta agaacaatgt
    13801 gtggtgttta tccgcaaaat cttccgataa tttttcgatt tgtttatcga acactaacgc
    13861 actttcaatt tgtgctggta agcgttgtaa agattgcacg atatggtgtt cttgctcttc
    13921 actcattctg ccttgtaagc gtccaatcgc cacatttaat aacaataagc aagttaattg
    13981 agtagtgaat gctttggttg atgctacacc aatttcaaca ccagctttgg ttaagaatgc
    14041 aaaatcggat tcacgcacta atgaagaact tgccacatta cacaccgtca ttgccgccat
    14101 atagccagat tctttcgcta aacgcagtgc agctaacgta tctgcggttt cacctgattg
    14161 tgaaagcgtg attaataagc tgttcgggcg agtaacgaat ttacggtaac ggaattcgga
    14221 ggcaatttcc acatcacagc tcacgcctgc aatggattca aaccaataac gtgaaaccat
    14281 accagcattg taagaggttc cacaagccac aatttgcacg tgttctactt tcgataaaat
    14341 ctctgccgca ttcggtgcaa tggctgaaat atctacttta ccgtctttga tacgaccatc
    14401 taaggtattc ataatcgcaa ccggctgctc aaaaatctct ttttgcatat agtgacgata
    14461 ttgtccttta tctgccgcgt ctgcctcaaa attgccttcg tgaatttcac gctctgcctt
    14521 gttgccttca cggtcataaa tatccactgt gcgacgggta atttcggcta catcaccttc
    14581 ttctagataa gcaaaacggc gagttacgct taataatgca agtgggtctg aagcaaggaa
    14641 gttctcgcct acaccgtaac caatcactaa cgggctacct gagcgagcca caattaaatg
    14701 ctccggctct tcttcattta ataccactgt gccgtaagca ccacgcagtt gcaccacggt
    14761 tttttgtacc gcttccaata atgaagaagc agaacgcaat tcccattcaa ctaaatgagc
    14821 aatgacttcg gtatcggttt gagattggaa cacataacca cgctcttgta acactatttt
    14881 taactcttcg tagttttcga taatcccgtt atgaactact gcaattttgc cactgcggtg
    14941 tgggtgagca ttagtttctg acggctcgcc gtgcgttgcc cagcgagtgt gtgcgatccc
    15001 agtgccgcct aatagtggct tagtgtctaa cgcctcatct aaggctttga ctttaccgac
    15061 acggcgtaca atttgcattg ttttatcatc tgcatttaat actgctacac cagcagagtc
    15121 atatccacgg tattctaagc gatgtaaacc atcaaccaag atttctgcga tatcacgttg
    15181 tgctactgca cctacaattc cacacataaa tttgctttcc tatgtttaag tttaaaaatt
    15241 catttgagct actgctattt tgcaataacc acttcgacac ccattttttc gatttgttct
    15301 ttcgtttcaa aacttaattg actgtcggta ataattttgg taatattttg ccatttcaat
    15361 tcaatattcg gcattttccg accgattttt tgcgattcaa ttaacacaat cacttcacgg
    15421 ctcacttctg ccatcacctg acttaagcca actaattcat taaaggtagt cgtgcctcga
    15481 gccaaatcta aaccgtccgc accaataaaa agctgatcga aatcatatga acgcaatacc
    15541 tgttctgcta ctttgccttg aaaggactca gaacggctat cccaagtgcc gccggtcatc
    15601 aacactgttg gttcgcattc gagggaagtc aattccgtcg ctaaattcag cgaatttgtc
    15661 atcaccacca agccggtttg gttcaatgct tttaccaaag ctccggtcgt gctgccgctg
    15721 tcaataatga tgcgattatg atcacgaata caatcacgtg cggcttgagc aatcattttc
    15781 ttttgaatcg aaagttgctc aataaacgct tcttccatca tttccgatgg aatttttacc
    15841 gccccaccat acttacgcaa taaaaaacca ctttcttcca aagcggttaa atcttttcta
    15901 atcgtaactt cagacgtctc aaagaaatga gcgagttcat ctacactcac ttcatttttc
    15961 tcttgtacca tttgaacaat taaatggcgg cgttgttgcg tgttacgttt tgacattata
    16021 atcttcactt aaatttcgtt tcaaaacttt tgcattataa agaaagctcg cgaaaagaaa
    16081 agcagaaaat gcaaaattta caaaatctat acaaaataaa accgcttgta atattgattt
    16141 acaagcggtt gatttcttga aattttttgc aattatttga tttggctacc aatcacgcca
    16201 ccaagtgcgg caccacctaa agttgcaccg gtagattcac caatcgcgtg accagccaca
    16261 ccgccaattg ctgcaccgat tgcagtatta cgttgcgttt ttgtcatatt gttacagcca
    16321 gacacagcaa ccattaatac cattgcacca acaactttca aaatagattt cataataatc
    16381 cctcataatt aatcaatttc aaataagcca atattcttgg ctatgctata agatttaatt
    16441 tatttagaaa ggttcaacta ctaccaccta tgaattgcaa attttttcac aatttaggcc
    16501 gcttgttgat tgaactgtga gcttgctcac agaattttat ggtatttctt gctatattgt
    16561 atagcaatct atgcgataac tcattaagga aataaaaatg aaattaaaaa aattatcttt
    16621 agcactctcg actttattac tcggttcagc ctttgccaac tctgctttag cggaaggtcg
    16681 tttaaccgtt tattgtagtg ccactaatga actttgtgag caagaagtgc aagcattcgg
    16741 caaaaaatat aatgttaaag tagcatttgt gcgtaatggt tcaggcagta cattggcgaa
    16801 aattgaagcg gagaaaaaca atcctcaagc tgatgtatgg tatggcggta ctttagatcc
    16861 acattcacaa gctgcagaaa tgggtttact cgagccgtat aaatcaccga atctcgaaca
    16921 aattatcgaa aaattccgtg atccggcaaa attaaaaggc aactactctt cggctgtgta
    16981 tatggggatt ttaggttatg gtgtgaattt agaccgaatc aaaaaactcg gcattgaaaa
    17041 agtgcctagc acttgggaag acttgctcga cccacgccta gccggtgaaa tccaaattgc
    17101 cgacccacaa agctccggca cggcttatac tgcgattgcg accttcgtac aacttttagg
    17161 agaagaaaaa gccttcgact atttccgcaa attacacaaa aacatttcac aatataccaa
    17221 atccggcatc acaccggcac gcaataccgc ccgtggtgaa accgctatcg gtatcggttt
    17281 cttacacgac tatgcgattg agaagaaaaa cggggctaac attgaaatga ccgcaccaac
    17341 agacggcaca ggctacgaat taggtggtgt gagtatcctc aaaggtgcaa gaaatcttga
    17401 taatgcaaaa ctgttcgtgg attggtcgct ttctaaagaa gctcaagaac tctcttggca
    17461 aaaaggcaat gcgttccaag tattaaccaa caccaccgca gaatcttccc cttatgctct
    17521 agatccgaaa aacttaaact taatcaacta tgatttcgag aaatacggct cgagcgaaga
    17581 gcgtaaacgc ttgattgata agtgggtaaa tgaagtaaaa ttagcgaaat agtgttaatc
    17641 tttccactga ggggataagc aattatcccc tctctaatta taagaatctg tgaggtgtta
    17701 tgcagaattt ttccttttcc cgaccgcttg tttgggtgct tatcgggtta ctcggttttc
    17761 tcttgttacc gtctaaagcc ttagattatg ggctgtttga ctcaacctct gatgaactgc
    17821 tcgccgcaat gggctgggcg tgctgttcgc ctttattttc ctgtcagcga ttgtgctgaa
    17881 aatcagcctc ggttatgcgg tgttgccgtt gattattgcc attatggggc ttgcgacccc
    17941 aaatttagca acgctcaaag taatgcaggg tgaccgcttt attatcggct cgttactgag
    18001 cattattctg ctgattttct tttttattgt gtatccgacc atcgccattt ttgtgtcgat
    18061 gttctacaac ggctcggaat ttgtgccaag ccaagtgctg acaattttgc aacaacctta
    18121 tgtcgttcga gtcatcggta actcgctctc ggttgccggc acggtgggcg ttctctccac
    18181 cctattcggc ttagcctttg ctctctacac cactcggatt gctaaacgct cggcgtttat
    18241 cgggcggatt ttctcgattt tacctatcgt caccccgccg tttgtggtcg gtttaggcgt
    18301 aaccctgatg cttgggcgtt ccggctatgt tactgaattt ttagtggatt actttggctt
    18361 tgccaacaat tggctgtacg gtttcaccgg tattgtgata gcccataccc tcgcgctcac
    18421 gccaatgtcg tttatgattt tggaaggggc attgaaatcc attcacccat cggtggaaga
    18481 agcagcttac accctgcgtt ccaaccgcta tcaagccttt tttaacatta ttttcccatt
    18541 gttaaaaccg gcattggcaa actccttttt agtggtggca attcaatccc tcgccgattt
    18601 cagtacgccg ttagtattgg gcggtagctt tgatgtgatt gcaacccaaa tctacttcta
    18661 cattgccggt tctcaactgg attatgcctc tgctagcacg cttggggcaa ttttgttggt
    18721 gttctcctta gccattttcg tgatccaata cctctggatc ggcaatcgct cttatgtgac
    18781 ggtgtccggc aaatcctatc ggggtgatgt ccaagactta ccaagcggta tgaaatggct
    18841 gattatttgc accttattgt tctggggaac cttcaactta gtgctgtacg gcagtatttt
    18901 ctacggcagt ttcaccgtga actggggtgt ggattatacc ttaacccttg ataactacat
    18961 caagctattc gggcaagggt ttagcgatgg cggtttccct tcgttaattc aaaccgtgat
    19021 tttcgctgcc gctgccgccc cgattactgc actattcggc ttgctgatcg cctatgtgac
    19081 agttcggcgt gatttcaaag gcaagaaaac cctggaattt ttaaccctgc tctgctttgc
    19141 cgtaccggga acggtggcag gtgtttctta cattctcgcc tttaacgatg ccccgattta
    19201 cctaaccggc accggtatga tcatcattct ctcaatggta atgcggaata tgcctgtggg
    19261 tatgcgagcg gcaattgccg gcttagggca gttggataaa tcgctggacg aagcctcgct
    19321 ctcgctgaaa gccggttcgt tcaaaacgat gctgtttgtg gtgttaccgc tactcaaacc
    19381 ggcactgctc tccgccctcg tcaccagctt tgtgcgggca atgacgactg tcagtgcgat
    19441 tgtattctta gtcaccgccg acactcgtgt ggcaacctcc tacattctca accgtgtgga
    19501 agacggtgaa tacggcattg cgattgccta cggctcaatt ttaattgtgg tgatgatggc
    19561 gattatcctg atttttgact ggattgtcgg cgacacccgt atcgcccgtt ctaaggcgaa
    19621 aaaaatgtaa aaagacatct actctctccc tttatgggag agagacagaa aaatacttcg
    19681 ttcagaagta tttttcagag agagggatat aattaaaagg acaatatatg aacaacgatt
    19741 tcttagtatt aaaaaacgtc accaaatctt tcggcaaggt gacggtcatt gataatctca
    19801 acctcagtat tccgcaaggt aaaatggtga cattactcgg gccgtccggc tgtggtaaaa
    19861 ccaccgtact gcgtttagtg gcagggctgg aaaacccgac ttcggggcaa atttttattg
    19921 atggcgaaga tgttacccaa agttcgatcc aacaccgtga tatttgcatt gtgttccaat
    19981 cttatgcgtt atttccgcat atgtcgattg gcgataatgt cggctacggc ttgaaaatgc
    20041 agggcgtacc gaaagaagaa cggctgcaac gagtgaaaga ggcgttggaa ttggtggatt
    20101 taggcggctt tgaagatcgc tttgtcgatc aaatctctgg cggacaacaa caacgtgtcg
    20161 ccctcgcccg tgccttaatt ctgaaaccga aagtgctact gttcgatgaa ccgctgagta
    20221 accttgacgc taacttacgc cgttcaatgc gggagaaaat ccgtgaatta cagcaacgtt
    20281 taaacattac ttccctttat gtgactcacg atcagtccga agcctttgcg gtttcagatg
    20341 aagtaattgt gatgaacaag ggaaaaatta tgcaaaaagc tccagccaaa gagttatacc
    20401 ttcgccctaa ttctttattc ttagcaaatt ttatgggtga aagcagcatt tttgaaggca
    20461 cgatagctgg caaccaaatt aatataaatg gatatcaatt tacgttagca aatgctgaac
    20521 aatttgagtt acccgatggg gaatacttag ttggcattcg tccagaagct attcatttag
    20581 ctgaacaagg aaatataagt caactctgta aaattaaaaa tgcagtttat atgggaaatc
    20641 attgggaaat tatagctgaa tgggaaggga aagatttatt agtcaatact aaacctgaaa
    20701 atttttaccc tcatatcaaa caggcctatg tacattttat cgaacaaggt gtttttcttt
    20761 taaagaaaga gctataacga atttatacta aattaagagg aaggtagtta taactattta
    20821 gcaattttga gaaaaatagg ccgcatgcaa aatctcttga tgacaagcgg tcttttctcg
    20881 ccga
//
LOCUS       DANMBQ010000025        20865 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.025, whole genome shotgun sequence.
ACCESSION   DANMBQ010000025 DANMBQ010000000
VERSION     DANMBQ010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20865
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.025"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..751)
                     /locus_tag="PXE92_000861"
     CDS             complement(<1..751)
                     /locus_tag="PXE92_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5760128.1"
                     /translation="MSKNRLEQILLFLKNHNIATVEQLVKVTEASPATIRRDLIKLDE
                     EGVVIRTHGGVSLNQFIPFQPTTNEKQFKQIVEKERIAEYAVSLISPGNSILLDAGTT
                     TLCIAKKIAHMPLRVITTDLHIALLLSEYKQIELIITGGRVDNSSQSCIGNHSLTLLE
                     NINPDIAFVSCNSWSLEKGVTAPTEEKANLKRMLQQNAKQKVLVADSSKYGKYSLFRA
                     TQLDNFTQIITDKGLPIEYSQALSSNDFKLSL"
     gene            complement(859..2085)
                     /locus_tag="PXE92_000862"
     CDS             complement(859..2085)
                     /locus_tag="PXE92_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL5760129.1"
                     /translation="MKETLLVIADDLTGANDTAVMFAESGFDTVLKTKVSALAQIHPD
                     KAQVISVSTDSRAIGEKAKELTQIAISNAIQNSIGQIYLKIDSTMRGSVKYQIEGAIK
                     AWAGLYPDVKAIICPAYPEMGRTIEAGHLYVNGVPVNETASGKDPICPVHSSSMQKLL
                     PDAQVIPCDTVDNLQASIENSEYKQIVIDAKTHEDLSMIAQVINHIGNKIIPVGSAGL
                     AQKLKNIQNQQQPERNLKLGRALIVVTSIHETSQLQVDEYISTLGGKSIVFNPSPSQL
                     INYSQSEHSLKLQLNALIRFSRDHVIIRANPAKVVNAKSANITETSKEISQHLADLSK
                     FCLDNEKFDSLILFGGDGAAALLDQMNVTEMNVQYAVVPGVPLCSIEKGNYSGITVMT
                     KSGGFGNNTLLSNIMN"
     gene            complement(2082..3080)
                     /locus_tag="PXE92_000863"
     CDS             complement(2082..3080)
                     /locus_tag="PXE92_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate permease"
                     /protein_id="HDL5760130.1"
                     /translation="MSTQTSKSIVPIYDGMNKIPGGAMVIPLILGSIIGTFFPEFLNL
                     GSFTTALFKSSAGPLIALLIFATGMQITVRSSGPVLAHTGVVLLFKTIIPALLVVILG
                     LWVGNDGVMGVSLLAMLTVVANSNGGIWLAFTGKYGDYRDKGAYVASAVNDGPFFVLL
                     FLGVSGLADIPLSLMLAAVIPLIIGMVIGNLDPKWTELMKPTGAIVIPFFAFALGTGI
                     NLQSIITGGATGIILGIVASLFTGFLVFIGYKTILRRGNQSGIGFAAGTTAGNAIITP
                     EIVAQADPTLAPFVQTATAQIAAAVLVSAILAPLFAAWVLKRQGGLEQDTIKGENL"
     gene            complement(3091..4092)
                     /gene="pdxA"
                     /locus_tag="PXE92_000864"
     CDS             complement(3091..4092)
                     /gene="pdxA"
                     /locus_tag="PXE92_000864"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HDL5760131.1"
                     /translation="MKPILGITMGDAAGIGPEVIIKALANQRIYELAHPVVIGDRKII
                     QRALPIVHSELKLRILNNLDNFVAEYGVIDILDLNNLPEDLPFAQVDPRAGKAAYEYI
                     EEAVNLAMGGKIHAIVTAPLNKEALHAGGKPFPGHTEILATLSNTKDYSMMLTSEKLN
                     VIHVTTHVQLRKACDLITKERVATVIDLAEENARILGFKEPRIAVAGLNPHSGENGMF
                     GDEDQKEIVPAIQEAQAKGFNVTGPVPPDTLFHRAANLNEFDIVVVMYHDQGHIPIKL
                     LGFDTGVNVTVGLPFIRTSVDHGTAFPIAGKGTADSRSMTEALYLGAKMANIKYATH"
     gene            4526..5890
                     /locus_tag="PXE92_000865"
     CDS             4526..5890
                     /locus_tag="PXE92_000865"
                     /EC_number="2.6.1.76"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005820549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminobutyrate--2-oxoglutarate transaminase"
                     /protein_id="HDL5760132.1"
                     /translation="MTIKTPIQAVLASNQYFLDRQDAMESNVRSYPRKLPFAYQKAQG
                     VWVTDVEGNEYLDFLAGAGTLALGHNHPKLIQAVKDVLDSGLPLHSLDITTPLKDAFT
                     EELLSFFPKDKYILQFTGPSGADANEAAIKLAKTYTGRGNVIAFSGGFHGMTHGALSL
                     TGNLSAKNAVQGLMPGVQFMPYPHEYRCPFGIGGEAGAKAVEHYFENFIEDVESGVVK
                     PAAVILEAIQGEGGVVPAPISFLQKVREVTQKHGILMIVDEVQAGFCRSGKMFAFEHA
                     GIEPDIVVMSKAIGGSLPLAVLAIKKEFDAWQPAGHTGTFRGNQLAMATGYVSLKIMR
                     EENLAKNAQERGEYLTNALRELSKELPCIGNVRGKGLMMGIDIVDERQPKDATGAYPR
                     DCDLAVAIQKYCFKNKLLLERGGRGGNVVRVLCAVNITQAECEEFIKRFKQSVAEAVK
                     AVRG"
     gene            5980..7515
                     /gene="ddc"
                     /locus_tag="PXE92_000866"
     CDS             5980..7515
                     /gene="ddc"
                     /locus_tag="PXE92_000866"
                     /EC_number="4.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2,4-diaminobutyrate decarboxylase"
                     /protein_id="HDL5760133.1"
                     /translation="MSNLEKHRQSLFCSDPKSIADYESAMNNAVKAVSDWLKEEKMYT
                     GGSIKELRAKINGFNPTQAGVGVQKSLEHLVEIFLKPSLKVHHPHSLAHLHCPTMVTS
                     QIAEVLINATNQSMDSWDQSPAGSIMEEHLIDWLRQKVGYGKGTSGVFTSGGTQSNLM
                     GVLLARDWAIANHWKKADGSEWSVQADGIPADAMQKVKVVCSENAHFSVQKNMAMMGM
                     GFQSVVTVPSNANAQMDVEALAKTLADLKAEGKIVACIVATAGTTDAGAIDDLKAIRK
                     LADEHQAWVHVDAAWGGALLLSKDFRHFLDGIELTDSITLDFHKHFFQSISCGAFLLK
                     DEANYRFIDYKADYLNSEYDEEHGVPNLVSKSLQTTRRFDALKLWFTVEALGEELYAS
                     MIDHGVYLSKEVEAYINATDGLEMLVPAQFASVLFRVVPQGYPAEFVDTLNQNVADEL
                     FARGEANIGVTKVGEHQSLKMTTLSPIATLENVRALLAQVLAEADRIKDSIVNGTYVP
                     PID"
     gene            7618..7980
                     /locus_tag="PXE92_000867"
     CDS             7618..7980
                     /locus_tag="PXE92_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NirD/YgiW/YdeI family stress tolerance protein"
                     /protein_id="HDL5760134.1"
                     /translation="MKKVLGLTLMAMALSACNSTASNGSSQANTGVAPANVISVKQVL
                     AAADDSYVTVEGTLLNKVGDETYLFKDATGQIRVEIDDEVWAGQHVGSEGNKVRLYGE
                     IDKGFNKTELDVKTLTVL"
     gene            complement(8070..8657)
                     /locus_tag="PXE92_000868"
     CDS             complement(8070..8657)
                     /locus_tag="PXE92_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5760135.1"
                     /translation="MNHLIIYAHPNPSSFNHAILEKTIAASVPNKVVVRDLYQLNFKP
                     ILDWAEFQGTLSKHYEADVAIEHQYWLEADVITLIYPLWWMGFPAILKGYLDRVLSYD
                     FAYRNGEIESIGLLTGKKMQQFVTLGNSNEKYERKGFLAAFEHTLGKGLFEFCGIRDV
                     KMHYFGNIGLKETDYTAILQQITASCSTILKEQAV"
     gene            8833..9381
                     /gene="napF"
                     /locus_tag="PXE92_000869"
     CDS             8833..9381
                     /gene="napF"
                     /locus_tag="PXE92_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HDL5760136.1"
                     /translation="MTDYPNQSLPRRSFLRGQFLDSLKSQKVSQQGYEPIRPPWANLA
                     NFLEKCTACGNCIQACETQIIVKGAAGYPEIDFSRGECTFCEKCVHSCEAEVFRAVSE
                     QPWSHKIEIQAGCLLKLGTECRSCGDSCEMRVIRFRPSLGGIAEMVLNLESCNGCGAC
                     LSVCPTSAIKIQPLQTQANRDE"
     gene            9374..9640
                     /locus_tag="PXE92_000870"
     CDS             9374..9640
                     /locus_tag="PXE92_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HDL5760137.1"
                     /translation="MSEKLSEQENWYVCSLVVQAKPEKLEEVKAEILKIPHTEIHGEK
                     TDEGKLVVTIESNVHLALSDRIDQVRDIKGVIVVSLISNYIDEQ"
     gene            9679..12177
                     /gene="napA"
                     /locus_tag="PXE92_000871"
     CDS             9679..12177
                     /gene="napA"
                     /locus_tag="PXE92_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005566990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase catalytic subunit NapA"
                     /protein_id="HDL5760138.1"
                     /translation="MELNRRDFMKANAAVAAAAAAGIMIPVKNVQADDTGIRWDKAPC
                     RYCGTGCSVLVGTKDGKVVATQGDPDAEVNRGLNCIKGYFLSKMMYGADRMQEPMLRM
                     KDGKFDKNGDFTPVSWDQAFSIMAEKIKTTIKNDGPNAVGMFSSGQTTIFEGYAKVKL
                     WKGGFRSNTIDPNARHCMASAAVAFMRTFGMDEPMGCYNDIEKTDAFVLWGSNMAEMH
                     PILWSRISDRRLSDNKVKVVVMSTYEHRSFELADTPIIFKPHSDLAILNYIANYIIQN
                     DKVNWDFVNKHTKFKRGETNIGYGLRPEHKLQQNTNAKTAGKMYDSDFEEFKKIVAPY
                     TLEEAHRISGVPKDQLETLAKLYADPNQKLVSFWTMGFNQHTRGVWVNHMMYNVHLLT
                     GKIALEGCGPFSLTGQPSACGTAREVGTFIHRLPADMVVTNPKHREIVENSWKLPAGA
                     IPDVPGFHATAQSRALKDGKMKFLWQMCTNNMQGGPNINEEIFPGWRNPETFIVVSDP
                     YPSVSAVAADLILPTCMWVEKEGAYGNAERRTQFWRQQVKGPANARSDTWQLVEFSKY
                     FKVEEVWPEELLAKAPELRGKTLYEILYRNGKVDSYQVPTNIPGYMNDEADHFGYYIQ
                     KGLFEEYAEFGRGHGHDLADFDTYHKVRGLRWPVVKDEKTGEYKETLWRYREGYDPYV
                     KAGEEVAFYGNADKKAVILGVPYEPPAEAPDEEYDLWFCTGRVLEHWHTGTMTRRVPE
                     LHKAFPTNLVWMHPNDAKKRGLRHGDKVKVISRRGEYVSNLDTRGRNKCPEGLIYSTF
                     FDAGQLINKVTLDATDPISFETDFKKCAVKVVKA"
     gene            12266..13171
                     /gene="napG"
                     /locus_tag="PXE92_000872"
     CDS             12266..13171
                     /gene="napG"
                     /locus_tag="PXE92_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HDL5760139.1"
                     /translation="MKMDPNRRQFLKNATRTAAGVCGVGMILGLQQQQSFARQGVALR
                     PPGALPEQDFLSACTRCGQCVQACPYDMLHLASLISPVEAGTPYFIARDKPCEMCLDI
                     PCMNACPTGALSEELKDIDDARMGLAVLLDHETCLNWQGLRCDVCYRVCPLIDKAITL
                     EKVHNDRTSIHAKLIPTVHSDACTGCGKCEQACVLEEAAIKVLPMDLAKGLLGRHYRL
                     GWQEKQNAGKSLIEDVHPEGLRPAYDARMPEGLHEPVYQHMEVKPDVKVATPSRATQN
                     YVPNSTTVEAPEHFPDLDLNLKGVK"
     gene            13171..14049
                     /gene="napH"
                     /locus_tag="PXE92_000873"
     CDS             13171..14049
                     /gene="napH"
                     /locus_tag="PXE92_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HDL5760140.1"
                     /translation="MAANSPKNAGLEARQKLGWWHAYRFLILRRLSQLSIILMFLSGP
                     LWNVWILKGNYSGSLLLDTVPMTDPLMTAEVLATGYRPEWTVLVGALIMVAFYGIVGS
                     KLFCSWVCPMNMVTDTAAWLRRKLGIRQTAKIPRNLRYVILAVILVGSAISGTLLWEW
                     INPVAALGRVFVFGLGATLWLVLVVFLFDLLVAEHGWCGHLCPIGATYALIGAKSLIK
                     VKVVDRNRCDNCMDCYNVCPEPQVLRVPLHGKPEESTVILSKDCITCGRCIDVCAENV
                     FAFGMRFQGSIDVKNI"
     gene            14095..14523
                     /locus_tag="PXE92_000874"
     CDS             14095..14523
                     /locus_tag="PXE92_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HDL5760141.1"
                     /translation="MRKYLAFILAVMSGFAMAEAPKLSGSIDETTESVAPGFHNPQKD
                     VGTIPTTFPFQPPLVPHSIRGLQVSKNVNHCLGCHAIEPSKTTGATRLPPSHFTDRDG
                     KVYENESPRRYFCLQCHVQQTDVNPIIQNKFESVRESQAK"
     gene            14534..15142
                     /locus_tag="PXE92_000875"
     CDS             14534..15142
                     /locus_tag="PXE92_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL5760142.1"
                     /translation="MLRRFCNWLRSPSKMAIGAVILISALGGIFAWSGFNAGLAMTNT
                     EEFCSDCHMNDVVPEYRASAHYSNRSGVKAICSDCHVPHEFFPKWQRKIIAAKEVYAH
                     FTGKVDTKEKFEAHRGEMAEREWARMKANSSQECRNCHNFDDMDFTQQKNIAQQMHAL
                     AQEQGKTCIDCHKGIAHNLPHMEAIQKNFIPDDLLKKAEEKK"
     gene            complement(15204..16023)
                     /gene="cpdA"
                     /locus_tag="PXE92_000876"
                     /pseudo
     CDS             complement(15204..16023)
                     /gene="cpdA"
                     /locus_tag="PXE92_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253466.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
     gene            16328..16462
                     /locus_tag="PXE92_000877"
     CDS             16328..16462
                     /locus_tag="PXE92_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/trimethylamine N-oxide reductase
                     NapE/TorE"
                     /protein_id="HDL5760143.1"
                     /translation="MRSELLKTLLLSGLILPLLMAFAVGAYGFIVWMLQLFVIGLPGA
                     "
     gene            16466..17629
                     /gene="torC"
                     /locus_tag="PXE92_000878"
     CDS             16466..17629
                     /gene="torC"
                     /locus_tag="PXE92_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
                     /protein_id="HDL5760144.1"
                     /translation="MLGSIKALFTRPATKIGLGVLVGIGFIAGAISWHQFNKAMDHTS
                     TEEFCVSCHSMQQPLEELKKTAHWSNKSGVTATCSSCHLPHDYTEKYARKVQASREAW
                     AELSGKYKEEGSFEKHRLEMAEREWARFAANGSKECKACHSYERMNFDKMGEAARKAM
                     KPAAEKDQSCMDCHKGIAHHLPKADENALKSKFDQFVNKSPNQGKSYYTKGNAELFLD
                     EGLSQAIGQLETAVPVAFVQAGKNADLVELTMWRKEKGFGRIWYHDFGKNITDAVLTK
                     EFMANQPKFEVLETKEDPITGLNWQKVKLQAWIGKAQLLDDVTPIWANAENQYKTQCS
                     TCHRQPDVAHFDSNSWIGLFNGMVGFTNMDKQTGKEVLRYLQMHASDSEEAKH"
     gene            17729..20194
                     /gene="torA"
                     /locus_tag="PXE92_000879"
     CDS             17729..20194
                     /gene="torA"
                     /locus_tag="PXE92_000879"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL5760145.1"
                     /translation="MQQSRRQFLKNMSVMAAAVTMPNFLVPRNVFASEDLSQWKVSGS
                     HWGAMRAKIENGRVAEIKPFEFDKHPTEMLNGIKGLIYSDSRIRYPMVRLDWLKNRHN
                     SNTAQRGDNRFVRVTWDEALDLFYQELERVQKEYGPWALHTANVGWRSTGQFHSCGNH
                     MIRAIAMHGNSVGTAGDYSTGAGQTILPYVLGSTEVYSQGTSWEIILKESENIIFWAS
                     DPVKNLQVGWNCETHEAYAYLEKLKEKVAAKGVNVICVDPVKSKTQNFLGCEQQYINP
                     QTDVPFMLALAHTLYTENLYDKKFLDMYTVGFEKFLPYLLGETEDKVAKTPEWAAEIC
                     GISADKIREFARMLAGKRTQFIFGWAIQRQQHGEQPYWMGAVLASMLGQIGLEGGGIS
                     YAHHYSSIGIPESGAAMPGAFPLNIDEGQTPKYDNKDYKGYSDTIPVARMTDSLLHAG
                     ETIDYNGKKVTYAPFKMAIFTGCNQWHRHSERNKMKQAFQKLETIVSINYSWTATCRF
                     SDIVLPACTPFERNDIDAYGSYSNRGVIAMHKLVDPLYDSRSDFEIFRDLCRRFGKEK
                     EYSRGMDEMQWVEKLYKDCRRENRGKFEMPEFAEFWQKGYVLFPEGKPWVRHADFRED
                     PELHALGTPSGFIEIYSNKIASFGYDDCKGHPMWFEKAERSHGGKNSDKFPYWLQSVH
                     PDKRLHSQLCESKELRETYSVQGREPLYINPQDAAKHGIQDGDLVRVFNDRGQAIVGA
                     VLSDNFPTGVVRLQEGAWYSPLDESVGAIDTYGDPNTMTLDIGTSKLAQAVSANTCLV
                     NIEKFIGNAPAPNGFNGAIEVTA"
     gene            20194..20784
                     /gene="torD"
                     /locus_tag="PXE92_000880"
     CDS             20194..20784
                     /gene="torD"
                     /locus_tag="PXE92_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HDL5760146.1"
                     /translation="MTLAISREERQFIYGWFNAMLARELSDEQLNALQAGEFDDFFAY
                     LSELGFAEQVAKFQAEVTACRQLEFPRLELAADFAQLFLLEGNLSAIPYASAYLSGEA
                     LAKNLAEMDRLLGEFGLQVNRETKEPSDHLCVYLTLFDRLLAEKPLETQQQFLQNQLM
                     SWLPAWFAKAKTVKTNTGVYPALLRLFEQVLLKEQR"
BASE COUNT         6155 a         4211 c         4672 g         5827 t
ORIGIN      
        1 ctaatgatag cttaaaatca ttacttgaca aggcttggct atattcaata ggtagtcctt
       61 tatctgtgat aatttgtgta aagttatcga gttgagttgc acgaaataaa gagtattttc
      121 catatttgct gctatcggca accagtactt tttgtttggc gttttgttgg agcattcttt
      181 ttaaattagc tttctcttct gtaggtgctg taactccttt ttctaagctc caagaattac
      241 agctcacaaa agcaatatca ggattaatat tttctaataa agttaaacta tgattaccaa
      301 tacaagattg actactatta tctactcgtc cccctgtaat aattaattct atttgcttat
      361 attcagagag taataaagca atatgtagat cagttgtaat cactcgaagt ggcatatgag
      421 cgattttttt cgcaatgcat agcgttgtag tgccagcatc taataaaata gaatttcccg
      481 gtgaaataag cgaaacggca tattcagcta tgcgttcttt ttcgacaatt tgcttaaatt
      541 gcttctcatt tgttgttggt tgaaacggta taaattggtt taagctgacc cctccgtgtg
      601 tgcgaatcac gacgccttct tcatctaatt ttattaaatc acggcggata gttgcaggag
      661 aagcctcagt cacttttacc agttgctcta cggtagcaat attgtggttt tttaggaata
      721 gtaaaatttg ttctagacgg tttttagaca tataaactct ctaattttta actgctttta
      781 ctataagtaa ttttttaaaa ataagatagt taaaattaaa gaacctaaaa cattgttgct
      841 ttaggttctt tgttgttact agttcattat attgcttaag agtgtgttgt ttccaaatcc
      901 tccagattta gtcattacag tgatgcctga gtagttgccc ttttcaatgg agcataaagg
      961 aacgcccggt actaccgcat attgtacatt catctctgtt acattcattt gatctaataa
     1021 tgctgctgca ccatctccac caaataatat aaggctatca aatttttcat tatcaaggca
     1081 gaatttactt aaatcagcta aatgttgaga aatttcttta gaagtttccg tgatattggc
     1141 agattttgca tttacaactt ttgcagggtt tgcccgaata ataacatgat ctctactaaa
     1201 acgtattaga gcgtttaatt gtagtttcag tgaatgttct gattgcgagt agttaatcaa
     1261 ctgtgaaggc gaaggattaa atacaataga ttttcctcct aaagttgaaa tatattcatc
     1321 aacttgcagt tggcttgttt cgtgaattga ggttacgaca attaatgctc tacctaattt
     1381 aagatttcgc tctggttgtt gttgattttg gatatttttc aacttctgtg ccaatccggc
     1441 tgagccaaca ggaataattt tattacctat gtgatttatg acttgggcaa tcattgagag
     1501 atcttcgtgc gttttagcat caataacgat ctgtttatat tcactatttt caatagatgc
     1561 ctgcaaatta tcgaccgtat cacacgggat tacttgagca tcaggcaata gtttttgcat
     1621 agaagatgaa tgcacagggc agataggatc ttttcctgaa gcagtttcat ttacaggaac
     1681 accattaaca tataaatgac cagcttctat agttcttccc atttctggat atgcaggaca
     1741 aataattgct ttaacatcgg gatataaacc agcccaagct ttaatagcac cttcaatctg
     1801 atatttaaca gagcctctca ttgtggaatc aattttaagg taaatttgcc cgatactatt
     1861 ttgaatagca ttgctaattg caatttgagt cagctctttt gctttctctc caattgctct
     1921 tgaatctgta gaaacagaaa ttacttgggc tttatcagga tgaatttggg ctaatgccga
     1981 aactttagtt tttaagacag tgtcaaatcc tgattcagca aacataaccg cggtatcatt
     2041 tgcaccagta aggtcatcag caataactaa gagtgtctct ttcatagatt ttctcctttt
     2101 atagtgtctt gttctaagcc accttgacgt tttaaaaccc acgctgcaaa taatggagct
     2161 aagattgctg aaactaatac agctgcggca atctgtgcag tcgcagtttg aacaaaaggt
     2221 gctaatgtag ggtctgcttg agcaacaatt tcaggtgtaa taatggcatt tccagcagta
     2281 gttcctgctg caaacccgat tcctgattga ttaccacgtc ttaaaattgt tttgtaaccg
     2341 ataaatacaa gaaaacctgt aaagagagaa gctacgatac ctaaaataat tcctgttgct
     2401 cctccagtaa taatagattg cagattgatt cctgttccta atgcaaaagc aaagaaagga
     2461 atgactattg cacctgttgg tttcattaac tctgtccatt taggatctaa gttaccaata
     2521 accataccaa taataagagg aataacagct gcaagcatta atgaaagagg aatatctgct
     2581 aatcctgata cacctaaaaa tagtaaaaca aagaaaggtc catcattaac agccgaagcg
     2641 acataagctc ctttatctct ataatcacca tatttccctg taaacgctaa ccaaatacca
     2701 ccatttgaat ttgcaacaac agttagcata gctaataaag aaacgcccat aacaccatca
     2761 ttacctaccc ataatcctaa aatcacaact aaaagagcgg gaataatagt tttaaatagt
     2821 aatacaacac cggtatgggc aagtacaggt ccagaacttc tcacggtaat ttgcatacct
     2881 gtagcgaaaa ttaatagtgc aataagtggt cctgctgatg atttgaataa agccgtcgta
     2941 aatgaaccta aatttaaaaa ttcaggaaag aatgtaccaa taatagaacc aagaattagc
     3001 ggtattacca ttgcaccgcc aggaatttta ttcataccat catatatcgg gacgatggat
     3061 ttagatgttt gagtagacat attaatctcc ttagtgtgtc gcatatttga tatttgccat
     3121 ttttgcaccc aaatagagtg cttcagtcat actacgacta tctgctgttc ctttgcctgc
     3181 tattgggaaa gcagttccgt gatcgacaga tgttcgaata aatggaagac cgacagtaac
     3241 gtttacacct gtatcaaagc ctaataattt gatagggata tgcccttgat cgtgatacat
     3301 cacaacaaca atatcgaatt catttaggtt agctgcacgg tgaaataaag tatccggagg
     3361 gacaggccct gtaacattaa accctttggc ttgagcctct tgaattgcgg gaacaatttc
     3421 tttttgatct tcatcgccaa acattccatt ttcacctgaa tgaggattta aaccagcgac
     3481 tgcaatacga ggttctttaa acccaagaat gcgagcattt tcttctgcta aatcaataac
     3541 tgtagcaact cgttctttgg taattaaatc acaggcttta cgaagttgga cgtgagtagt
     3601 aacgtgaata acattgagtt tttcactggt tagcatcatt gagtaatctt tagtattact
     3661 gagggttgca aggatctctg tatggccagg aaatggttta ccacctgcgt gtagggcttc
     3721 tttattcagt ggtgctgtaa caatagcgtg gatttttcct cccattgcta aattaactgc
     3781 ctcttcaata tattcataag ctgcttttcc agcacgcgga tcaacttgag caaaaggcaa
     3841 atcttcaggc aggttattca aatctaaaat atcaataacg ccatattcgg ctacaaagtt
     3901 atctagatta ttgagaattc ttaatttcaa ttctgaatga acaataggta aggctcgttg
     3961 tataattttt cgatcaccga tcacaacagg gtgtgctaac tcataaatcc gttgattagc
     4021 taatgcttta ataataactt ctggtccgat accggcggca tctcccatcg taattcccaa
     4081 tataggtttc atatttactc cttgattgaa attaatcatt ttgaacgaag tatagcttat
     4141 atgaaatcat aaaagtgtga taaacatcac aaaagtgaac ttttttaatc ttattgattt
     4201 aatttaatca attttaaggt ggtaaattgg atagggtatg aaagtgaaag gcatttattg
     4261 ctagataaaa gcttcccttt tcaataaaaa agagtatcat acgctctctt aaacgtaacc
     4321 ctacatttaa gtctgtttcc aacctatccc aatttcttta ttccttaggg gcatataggg
     4381 taaaaacaaa aaagctgaaa cgcttttttt aataagtagc gagtcaaatg ccccatggca
     4441 tctattcttt taggaataga aagcttaggc tttccgcaag gcacccgact tatttttttc
     4501 acctcttgta gaaggtttat tttcaatgac aattaaaact cctattcaag ccgttcttgc
     4561 ttcaaaccaa tattttttag atcgccaaga tgcaatggaa tcaaacgtgc gtagctaccc
     4621 acgtaaatta ccttttgctt accaaaaagc acaaggcgtt tgggtaactg atgttgaagg
     4681 caatgaatac ctcgatttcc tagcaggtgc aggaacgctt gcattaggtc ataaccaccc
     4741 taaattaatc caagcagtta aagatgtatt agacagtggt ttacctttac actcgttaga
     4801 tattacgact ccgttaaaag atgcttttac ggaagaatta ctctctttct ttccaaaaga
     4861 taaatatatc ctccaattta ctggcccgtc tggtgcagat gctaacgaag cggcaattaa
     4921 attagccaaa acctacactg gtcgtggcaa cgtaattgct ttctccggtg gtttccacgg
     4981 aatgacccat ggtgcgttat cgctcaccgg taatttaagt gcgaaaaatg cagtacaagg
     5041 cttaatgccg ggcgtacagt ttatgcctta tccgcacgaa taccgctgtc cgtttggcat
     5101 tggtggcgaa gccggtgcaa aagcagttga acattatttt gagaacttta ttgaagatgt
     5161 tgaaagtggt gtggtaaaac cggcagcggt gatccttgaa gccattcaag gtgaaggcgg
     5221 tgtggttccg gctccaatca gcttcttaca aaaagtgcgt gaagtcactc aaaaacacgg
     5281 catcttaatg attgtggacg aagttcaagc tggtttctgc cgttcaggga aaatgtttgc
     5341 ctttgaacac gcaggcattg agccggatat cgtagtaatg tcaaaagcga ttggtggtag
     5401 cttaccgctt gcggtattag cgatcaaaaa agagtttgac gcttggcaac cggcaggtca
     5461 taccggtaca ttccgtggta accaattagc aatggcaacc ggctatgtat cgcttaaaat
     5521 tatgcgtgaa gagaatttag cgaaaaacgc acaagagcgt ggcgaatact taactaacgc
     5581 attacgtgaa ttaagcaaag aattaccttg tattggcaat gtgcgtggta aaggcttaat
     5641 gatgggaatt gatattgttg atgaacgtca gccaaaagat gcaacaggtg catacccgcg
     5701 tgattgcgat ttagccgttg caattcaaaa atactgcttt aaaaacaaat tgttattaga
     5761 gcgtggcgga cgtggcggta atgtggtgcg tgttctttgt gccgtgaata ttacccaagc
     5821 agaatgtgaa gagtttatta aacgctttaa acaatctgtt gctgaagcag tgaaagcggt
     5881 gcgtggttaa tagttagaat ggtaggagcg aaacattttt cgccctaatg taaaaagggg
     5941 cgaatattta ttcgccccta caccaatagg atagaaataa tgtcaaacct agaaaaacac
     6001 agacaatccc tgttttgtag cgatccaaaa tcgattgcgg attatgaatc ggcaatgaat
     6061 aacgctgtga aagcggtttc agactggctg aaagaagaaa aaatgtacac cggtggctca
     6121 attaaagagt tgcgtgccaa aatcaacggt tttaacccaa cccaagctgg tgtgggcgtg
     6181 caaaaatcac tggagcattt ggtggaaatt ttcttaaagc caagcctcaa agttcaccac
     6241 cctcattctt tggcccactt acattgcccg acaatggtaa ccagccaaat tgcagaagtg
     6301 ttaattaatg ccaccaacca atcaatggac tcttgggatc aaagcccggc aggttcgatt
     6361 atggaagagc atttaattga ctggctacgt caaaaagtcg gctatggcaa aggaacttca
     6421 ggagtcttta cctcaggtgg tacgcaatca aacctgatgg gcgtattatt ggctcgtgac
     6481 tgggcgatag cgaaccattg gaaaaaggca gacggttcag agtggtcggt gcaagccgac
     6541 ggtattcctg ccgatgcaat gcaaaaagtg aaagtggttt gttccgaaaa cgctcacttc
     6601 tcggtgcaga aaaatatggc aatgatggga atgggtttcc aatcggtagt gactgtaccg
     6661 tcaaatgcca atgcacaaat ggacgttgaa gctcttgcga aaacgttggc ggatttaaaa
     6721 gccgaaggca aaattgtggc ttgtatcgtc gcaaccgcag ggacgaccga tgccggtgcg
     6781 attgatgatt taaaagcgat ccgtaaatta gccgatgaac atcaggcttg ggttcacgtt
     6841 gatgctgctt ggggtggtgc attattactg tcgaaagatt tccgccactt cttagacggc
     6901 attgaattaa ccgattccat tacccttgat ttccacaagc atttcttcca atcaatttcg
     6961 tgtggggcat tcttgctaaa agatgaagcg aattaccgct ttattgatta caaggcagac
     7021 tacctgaatt cagaatatga cgaagaacac ggcgtgccga atttagtgtc aaaatcattg
     7081 caaactaccc gccgttttga tgcgttaaaa ttatggttta ccgttgaagc cttgggtgag
     7141 gagctatacg cttcaatgat cgaccacggg gtttatcttt ctaaagaagt ggaagcctac
     7201 attaatgcca ccgatggctt ggaaatgtta gtgccggcac aatttgcctc agtcttattc
     7261 cgtgtcgtac cacaaggtta cccggcagaa tttgtggata ccttaaacca aaatgtggca
     7321 gatgagttat ttgctcgtgg cgaagctaac attggtgtga ccaaagtcgg tgagcatcaa
     7381 tcactgaaaa tgactacttt aagcccgatt gcaacgcttg aaaacgtaag agcattatta
     7441 gctcaggtgt tggcagaagc agatcggatt aaagattcga ttgtaaatgg aacttatgtt
     7501 ccgccaattg attaaactgc gttaaaaata aaaaggtgtt ttcgacattt atttgtgttt
     7561 taatgtttgc attcggtagt ctttatcgaa tgcaaatttt tttaacaagg agtttttatg
     7621 aaaaaagtcc tgggtttaac attgatggca atggcgttat cggcgtgtaa ttcaactgct
     7681 tccaacggtt cttcacaagc aaatacaggt gttgcaccgg cgaatgtgat tagcgtgaaa
     7741 caggtgttag cggcagcaga tgacagctac gtgacggtag aaggcacact cttaaacaaa
     7801 gtcggtgacg aaacttactt atttaaagat gcgacagggc aaatccgtgt tgagattgac
     7861 gatgaagtat gggcaggtca gcacgttggt agcgaaggca ataaagtccg tttatacgga
     7921 gagattgaca aaggtttcaa taaaaccgag ttagatgtta aaacactcac tgttctgtag
     7981 aagatcaaac cttaatttgg ttccccgcct tgtttggcgg ggtttttacg ttaattaatc
     8041 aaaccatcct tttgcaaaaa aacgcaaaat tataccgctt gttccttcaa tattgtgcta
     8101 caagatgctg tgatttgctg caaaatagcg gtgtaatcag tctcttttaa accaatatta
     8161 ccgaaatagt gcatttttac atcacgaatc ccacagaact caaacagccc ttttcccagc
     8221 gtatgttcaa atgctgctaa aaagcctttt cgttcatatt tttcattgga attaccgagc
     8281 gttacaaatt gttgcatttt tttgccggtc agcaagccga tactttcaat ttccccgtta
     8341 cgataggcaa aatcataact taacaccctg tctaaatagc cttttaaaat tgccggaaag
     8401 cccatccacc aaagcgggta aattaacgta atcacatcag cttcaagcca atattgatgc
     8461 tcaattgcca catctgcttc atagtgttta ctgagtgtgc cttgaaattc cgcccagtct
     8521 aatatcggct tgaagttgag ttggtagaga tctcgtacaa ccaccttatt tggaacggaa
     8581 gctgctatcg ttttttccaa aatcgcatgg ttaaagctgg agggattcgg gtgtgcgtaa
     8641 ataatcaggt gattcatagc gttttccttt actgtgtcga ggcagctact agaagatttt
     8701 agcgaaactt tctttgatga aaatcaatat tttggcgaat ataccggcaa ataccccgtt
     8761 tgaggaatga acggttttaa gtgaacatta gataatttag cctattatag tgatgagtaa
     8821 aaaggtgttt tcttgactga ttatcctaat caatcacttc ctcgccgtag ctttttgcga
     8881 gggcaatttt tagactcgtt aaaaagccaa aaagtcagtc agcaagggta tgagccgatt
     8941 cgtccgcctt gggctaattt agcaaatttt ttagaaaaat gcaccgcttg cggtaactgc
     9001 attcaggctt gcgaaaccca gattattgta aaaggtgctg cgggctaccc tgaaattgat
     9061 tttagccgtg gtgaatgcac tttttgtgaa aaatgtgtgc attcttgcga ggcagaggta
     9121 ttccgagcag tttcagaaca gccttggagc cataaaattg agattcaagc cggctgttta
     9181 ttaaagctcg gaacggaatg ccgaagctgt ggcgatagct gtgagatgag agtgattcgt
     9241 ttccgcccga gtttaggtgg cattgccgaa atggtattaa atttggaaag ctgtaatggc
     9301 tgtggggctt gtttgagcgt ttgtccgaca agtgcgataa aaattcagcc attacaaaca
     9361 caggcaaaca gagatgagtg aaaaattatc cgaacaggaa aactggtatg tgtgcagtct
     9421 cgtggtgcaa gcaaaaccgg aaaaattgga agaagtaaaa gccgagattc tgaagattcc
     9481 tcataccgaa attcacggtg agaaaacaga tgaaggcaaa ttggtcgtga cgattgaaag
     9541 caatgtgcat ttagcccttt ccgatcgaat cgatcaagta agagatatta aaggcgtgat
     9601 tgtggtgtct ttaatttcta attacattga tgaacagtga ttaatgatta tttttgaagc
     9661 caaacgtggg acatagttat ggaactcaat cgtagagatt ttatgaaagc gaacgccgct
     9721 gtggcagctg ctgcagccgc aggaattatg attcctgtga aaaacgttca ggcagatgac
     9781 accggtattc gttgggataa agccccttgt cgttactgtg gtacaggttg tagcgtgcta
     9841 gtcggtacta aagacggtaa agtagtggca acccaaggtg acccggatgc agaagtaaac
     9901 cgtggtttaa actgtattaa aggttatttc ttatccaaaa tgatgtacgg tgcagaccgt
     9961 atgcaagagc caatgttgcg tatgaaagac ggtaagttcg acaagaacgg cgatttcacg
    10021 ccggtttctt gggatcaagc ctttagcatt atggcggaga agattaaaac cactattaaa
    10081 aatgacggcc cgaatgctgt aggtatgttc tcatcaggtc aaacaaccat ttttgaaggt
    10141 tatgcgaaag tgaaactttg gaaaggtggt ttccgttcaa atacgattga cccgaatgcc
    10201 cgccactgta tggcgtccgc tgcggttgcc tttatgcgta cctttggtat ggacgagccg
    10261 atgggctgct ataacgacat cgaaaaaacc gatgcgttcg tgctttgggg ttcaaatatg
    10321 gcagaaatgc acccgatttt atggtctcgt atttctgatc gccgtttatc agacaataaa
    10381 gtgaaagtgg tggtaatgtc cacttacgaa caccgttcgt ttgaattagc cgatacaccg
    10441 attatcttca aaccacactc agatttagca attttaaact acattgcgaa ctacattatc
    10501 caaaacgata aagtaaattg ggattttgtt aacaaacaca ccaaatttaa acggggtgaa
    10561 accaatatcg gttacggttt acgtcctgaa cacaaattac aacaaaatac caatgcgaaa
    10621 actgccggta aaatgtatga cagcgatttt gaagagttta agaaaatcgt tgccccttat
    10681 acattagaag aagctcaccg tatttcaggc gtgccgaaag atcagcttga aacattagcg
    10741 aaattatatg cagatcctaa ccaaaaatta gtgtcgttct ggacgatggg ctttaaccaa
    10801 catacccgtg gtgtgtgggt aaaccatatg atgtacaacg tccatttatt aaccggtaag
    10861 atcgcattag aaggttgtgg gccgttctca ctcacgggtc agccgtccgc ttgtggtact
    10921 gcccgtgaag tgggtacatt tattcaccgc ttaccggcag atatggtggt cacaaatccg
    10981 aaacaccgtg agattgtaga gaattcttgg aaattaccgg ctggagcaat tcctgatgta
    11041 ccgggctttc acgctacagc tcaaagccgt gccttaaaag acggcaaaat gaaattctta
    11101 tggcagatgt gtaccaacaa tatgcagggc ggcccgaata tcaatgaaga gatcttcccg
    11161 ggctggcgta atcctgaaac ctttattgtg gtttcagatc cgtacccatc tgtttcagca
    11221 gtggctgctg acttaattct tccaacctgt atgtgggtgg aaaaagaagg ggcttacggt
    11281 aacgcagaac gccgtaccca attctggcgt cagcaagtta aagggccggc aaatgcccgt
    11341 tcagatactt ggcagttagt agagttctct aaatacttca aagtagaaga agtatggccg
    11401 gaagagttat tagctaaagc accggaattg cgtggtaaaa ctctatacga aatcctttac
    11461 cgcaacggca aagtagatag ctaccaagtg ccaactaaca ttccgggcta tatgaatgac
    11521 gaagcagatc acttcggtta ctacattcaa aaaggcttat ttgaagagta tgcggaattt
    11581 ggccgtggtc acggtcacga tttagccgac tttgacacct accacaaagt acgtggctta
    11641 cgttggccgg tggtaaaaga cgagaaaacc ggcgaataca aagaaacttt atggcgttac
    11701 cgtgaaggct atgacccata cgttaaagcc ggtgaagaag tggcattcta tggcaatgcg
    11761 gacaaaaaag cagtgatttt aggtgtgcca tacgaaccac ctgcggaagc accggacgaa
    11821 gaatatgact tatggttctg taccggtcgt gtactagaac attggcacac cggtacgatg
    11881 acccgccgtg tgccggagtt acataaagca ttcccaacca acttggtttg gatgcacccg
    11941 aatgatgcga aaaaacgagg cttacgtcac ggtgataaag tgaaagtgat ttcacgccgt
    12001 ggtgaatatg tatcgaactt agatacccgt ggacgtaata aatgtccgga aggtttgatt
    12061 tactcgactt tcttcgatgc cggtcagtta atcaacaaag tgacacttga tgcgactgat
    12121 ccaatttcat ttgaaaccga cttcaaaaaa tgtgcggtta aagtggtgaa agcttaattg
    12181 taggggcaaa ttatttgcct cagacaagcg gtcaaatttg caaatttttt tacaaaaacg
    12241 accgcttacc taagaggaac ccacaatgaa aatggatcca aatcgtcgcc agtttttaaa
    12301 aaatgcaacc cgtaccgcag ccggtgtttg cggtgtagga atgattttag ggctacagca
    12361 acaacaaagt tttgcccgtc aaggggtagc actacgccca ccgggtgcat tgccggagca
    12421 agatttcctg agtgcttgca cccgttgcgg acaatgtgtg caggcttgtc cttacgatat
    12481 gttgcatttg gcatcgctta tttcaccagt ggaagccggc acgccatact ttattgcacg
    12541 ggataaacct tgcgaaatgt gcttggatat tccctgtatg aatgcttgcc caaccggggc
    12601 attaagcgaa gagctaaaag acattgacga tgcacgaatg gggcttgcgg tgttgctcga
    12661 ccacgaaact tgtcttaact ggcaaggctt gcgttgtgac gtgtgttacc gtgtttgtcc
    12721 gttaatcgac aaagcgatta ctcttgagaa agtgcataac gaccgtacct cgattcacgc
    12781 caaactgatt ccgaccgtgc attctgatgc ttgcaccggt tgcggtaaat gtgaacaggc
    12841 ttgcgtattg gaagaggcag cgatcaaagt gttaccgatg gatttagcca aaggcttgct
    12901 cggtcgtcac tatcgtttag gctggcaaga gaaacaaaat gccggtaaat cgctgattga
    12961 agatgttcac ccagagggtt tacgcccagc ttatgatgcc agaatgccgg aaggcttaca
    13021 cgagccggtg tatcagcata tggaagtaaa acctgatgtg aaagtggcta cgccaagtcg
    13081 ggcgacacaa aactatgtgc cgaactctac gacggtggaa gctccggagc atttccctga
    13141 tttagacttg aatctcaagg gggtgaaata atggcagcca attctccaaa aaatgcgggc
    13201 ttagaggctc gtcagaaact aggttggtgg cacgcttacc gctttttgat tttaagacgc
    13261 ttaagccaac tcagcattat tttgatgttt ttaagcggcc cactttggaa tgtctggatt
    13321 ttaaaaggaa actacagcgg tagcttatta ctagataccg tgccgatgac agacccatta
    13381 atgaccgctg aagtgctggc aaccggctat cgccctgaat ggacggtatt ggttggggcg
    13441 ttaattatgg tggcgtttta cggcattgtc ggcagcaagc tgttttgtag ttgggtctgc
    13501 ccgatgaata tggtaacaga tactgctgct tggttaagac gcaaactcgg tattcgccaa
    13561 actgctaaaa ttccacgcaa tttacgctat gtgattttgg cggtgatttt agtcggtagt
    13621 gcgatttccg gaacactatt gtgggagtgg atcaacccgg ttgcggctct cggtcgggtg
    13681 tttgtattcg gtttaggggc aacgctttgg ctggttttag tggtgttctt gtttgactta
    13741 ttggtggcag aacatggctg gtgtggtcat ctttgcccga ttggtgcaac gtatgcctta
    13801 attggggcga aaagcctgat taaagtcaaa gtggtagatc gtaaccgttg cgataattgt
    13861 atggattgtt acaacgtttg tccggaacct caagtgttgc gtgtgccgct acacggtaaa
    13921 ccggaggaaa gcacggttat cttatctaaa gattgcatta cctgcggacg ttgtattgac
    13981 gtttgtgccg aaaatgtatt tgccttcgga atgcgttttc aaggcagtat tgatgtgaaa
    14041 aatatttaat ttttatcttt ttgaaaacaa gaattttaat ggagtgaacc tcaaatgaga
    14101 aaatatctcg ccttcatttt agccgtgatg tccggctttg caatggcgga agcccctaag
    14161 ttatccggat caattgatga gacaaccgaa agtgttgcac cgggatttca taacccacaa
    14221 aaagatgtgg gcacgattcc aaccactttc cctttccaac caccgcttgt tccacatagt
    14281 attcgtggct tacaagtgag caaaaacgta aaccattgtt taggttgcca cgctattgaa
    14341 ccatctaaaa ccacaggtgc gacccgttta ccgccaagcc attttaccga ccgtgatggc
    14401 aaggtgtacg aaaacgaatc tcctcgtcgt tatttctgtt tgcaatgcca cgtgcaacaa
    14461 actgatgtaa acccgattat tcaaaataaa tttgaatctg tacgtgaatc tcaagctaaa
    14521 taaggagtaa gtaatgttga gaagattttg taactggtta cgtagcccaa gcaaaatggc
    14581 aattggtgct gtaatcctta tttctgcatt aggtggtatt ttcgcttgga gtggttttaa
    14641 tgcagggtta gcaatgacaa atactgaaga gttttgttca gattgccata tgaacgatgt
    14701 tgtgccggaa taccgtgcct ctgctcacta ttcaaaccgc agcggtgtga aagcgatttg
    14761 ttcagattgc cacgtaccgc acgaattctt tccaaaatgg caacgtaaaa tcatagccgc
    14821 aaaagaagtt tatgcacact ttaccggtaa agtagatacc aaagagaaat ttgaagctca
    14881 tcgtggcgaa atggcagaac gtgaatgggc acgtatgaaa gcgaacagct ctcaagagtg
    14941 ccgtaactgt cataattttg atgatatgga cttcactcaa caaaaaaaca ttgcgcagca
    15001 aatgcacgca ttggcacaag agcaaggtaa aacctgtatt gactgccaca aagggattgc
    15061 acacaatctc ccacatatgg aagcgatcca gaaaaacttt atccctgatg atttgctgaa
    15121 aaaagcagaa gagaagaaat aacttaacgt gtttcaatag aaaaccctca atttccattg
    15181 agggtttctt tttagtagcc aagttagtaa ccaatggcat tgacatttgg taaaaaatcg
    15241 ttggaattta accgcttgac gaccgtttct atcgtgccgt tttcgtgcaa ttcaatttca
    15301 cgccagcctt gtggttgtaa gtctaaggta aactggtcgc aattcggctt aaattgaatg
    15361 caagtagatg gggtggcata aatcggaata ccatgccaaa tatcatcaac ctgctgatga
    15421 atatgaccat gcacaatcgc ttttacattc ttaaattttg cgaaaatctc ggataattca
    15481 ttgctgtttt ttaagctatg ctgatccagc cacgctgagt ttgtcggcaa aatattgtgg
    15541 tgcagagcaa caccgttgcg gatattgtgc caatttttct tctaaccatt taagctgtga
    15601 gtaagagagt tcgccataag gcatacctac cacctgggta tttagcatca gaagctgcca
    15661 ttgctcaccg agtaaaattt gtttatgggg aaggatatgt ttatattgcg ccaaaatttc
    15721 tgacatactc ggctgaacat cgtgattccc ctctagccac actatcggcg agtttagcga
    15781 attagttatc tgtgcaaaat agtgataacc agcaatattg ttatcttgaa tcaaatcacc
    15841 tgtggcaaga actagatcaa aatattgctt cgcttgtttg tttatttgct caataactgc
    15901 cgaaaaactt tttactgttt tgacattaag tagagtttcc tccggattgg agaaaaggtg
    15961 agggtcagtt atttgtaata acttaattac ccctgttacg ggtaacttaa tatattcgtg
    16021 cattcgtttt gcatccattc aaattctagt aatttttaac tggtgagatt ctatcagtaa
    16081 gctaaaagta aaaatgtgga ctatgccgca tttttgaaaa aaagtgagat taatcaaaaa
    16141 aaatttatta ttttcgatag ctaagacaat ggtaagtttg attaatactt tcatattgta
    16201 atagatgatt tttatactgt ttggctgttt ctagaacaac ttctttatat ttttgattga
    16261 tatcaaggca aattgtttct gaagataaaa taattaacac ttattagtta ataaaaaagg
    16321 agttgaaatg cgttcagaac tattaaaaac gcttttgcta tcagggctga ttttaccgct
    16381 attgatggcg tttgccgtag gagcttacgg ctttattgtg tggatgttac aactgtttgt
    16441 tattggttta ccgggagcgt agaaaatgtt aggttcaatc aaagcattat ttactcggcc
    16501 tgcaaccaaa atcgggttgg gagtgttagt tggtatcggt tttattgccg gagcaattag
    16561 ctggcatcaa tttaataaag cgatggatca taccagcact gaagagtttt gcgtgagttg
    16621 ccactcaatg cagcagccgt tagaggagct taaaaaaacc gcccactggt cgaataaaag
    16681 cggggtaacg gcaacctgtt caagctgcca cttaccgcac gattataccg aaaaatatgc
    16741 ccgcaaagtg caggcaagcc gtgaggcgtg ggcagaatta tccggcaaat ataaagaaga
    16801 aggctcattt gaaaaacacc gcttagaaat ggcagagcgt gagtgggcaa gatttgccgc
    16861 caatggttca aaagagtgta aggcttgcca cagctatgag cgaatgaatt ttgataaaat
    16921 gggcgaagca gctcgtaagg caatgaaacc ggctgcggag aaagatcaaa gttgtatgga
    16981 ttgccacaaa ggcattgctc accacttacc gaaagccgat gaaaatgcac tgaaatcgaa
    17041 gtttgatcag tttgtgaata aatccccaaa ccaaggcaaa tcttactaca ccaaagggaa
    17101 tgccgaatta tttctagacg aaggtttaag ccaagctatc gggcaattag aaaccgccgt
    17161 gccggtggca tttgtgcaag cgggcaaaaa tgcggatttg gttgagctga caatgtggcg
    17221 taaagagaaa ggtttcggtc gcatttggta tcacgatttc gggaaaaaca ttaccgatgc
    17281 ggttctaacc aaagagttta tggcaaatca gccgaaattt gaggtgttgg aaaccaaaga
    17341 agatccgatt accggcttga attggcaaaa agtgaaacta caagcgtgga ttggcaaagc
    17401 tcaattatta gacgatgtta ccccaatctg ggcgaatgca gaaaaccaat acaaaaccca
    17461 atgtagcact tgccacagac agcctgatgt cgcccacttc gattccaaca gctggatcgg
    17521 cttattcaac ggaatggtcg gctttaccaa tatggataaa cagaccggca aagaggtgct
    17581 acgttattta caaatgcacg cctccgatag tgaagaagcg aagcattaat aatattactc
    17641 ccctctttac taaagagggg aattaatcga gcgttgaata acattctctg tactagctca
    17701 cgtttttaca aataaagaag gacaagatat gcaacaatct cgccgtcaat ttttaaaaaa
    17761 tatgtctgtg atggctgccg ctgtcacaat gccgaatttc ctcgtgcctc gcaatgtgtt
    17821 tgcgagtgaa gacctcagtc aatggaaagt ttccggctct cactgggggg caatgcgtgc
    17881 caaaattgag aacggacgag tggcagaaat caaaccgttc gagtttgata aacacccgac
    17941 cgaaatgctc aacggcatta aaggcttaat ttacagcgat tcccgtatcc gctacccgat
    18001 ggtgcgttta gattggctca aaaaccgcca taacagcaac accgcacagc gtggcgataa
    18061 ccgctttgtg cgggtaacgt gggacgaagc cctcgacctg ttctaccaag agttagaacg
    18121 ggtacaaaaa gagtacggcc cgtgggcgtt acacaccgcc aatgtgggct ggcgttcaac
    18181 cggtcaattc cacagttgcg gtaaccatat gatccgagcg attgcgatgc acggtaacag
    18241 tgtcggcacg gcaggcgact attctaccgg tgcagggcag accattctgc cgtatgtgct
    18301 gggttcaacc gaagtctatt cgcagggcac gtcttgggaa atcatcttaa aagagagcga
    18361 aaacatcatt ttctgggcaa gcgacccggt gaagaacctg caagtgggtt ggaactgcga
    18421 aacccacgaa gcctatgcct acttggaaaa actgaaagag aaagtggcag caaaaggcgt
    18481 gaatgtgatc tgtgttgatc cggtgaaaag caaaacccag aatttcttag gttgcgaaca
    18541 gcagtacatc aatccacaaa ccgatgtgcc gtttatgttg gcacttgccc acacgctcta
    18601 caccgagaac ctgtacgaca aaaaattctt ggatatgtac acggtcggct ttgaaaaatt
    18661 cctgccgtat ctgttaggcg aaaccgaaga caaagtggcg aaaaccccgg aatgggcggc
    18721 tgaaatttgt ggtatttccg ccgacaaaat ccgtgaattt gcccgaatgc ttgccggcaa
    18781 acgcacccaa tttattttcg gctgggcaat tcaacgccaa caacacggcg aacaaccgta
    18841 ctggatggga gcggtgctag cctcaatgtt agggcaaatc ggcttggaag gcggcggcat
    18901 cagctatgct caccattaca gctctatcgg tattcctgaa tccggtgcgg caatgccggg
    18961 ggcgttcccg ctcaatattg atgaggggca aaccccgaaa tacgacaaca aagattacaa
    19021 aggctacagc gacaccattc cggtggctcg tatgaccgac agcttgctcc acgccggcga
    19081 aaccattgat tacaacggca aaaaagtgac ttacgctccg ttcaaaatgg cgattttcac
    19141 cggctgtaac caatggcacc gccattccga gcggaacaaa atgaaacagg cgttccaaaa
    19201 actggaaacc attgtttcga tcaactacag ttggacggca acctgccgct tctccgacat
    19261 cgtgctgccg gcctgtaccc catttgaacg caacgatatt gacgcctacg gctcatacag
    19321 caaccgtggc gtgattgcaa tgcacaagct ggttgatcca ctctacgact ctcgctccga
    19381 ctttgagatt ttccgagatc tctgccgccg tttcggtaaa gagaaagagt acagccgtgg
    19441 aatggacgaa atgcagtggg tagaaaaact ctacaaagat tgtcgccgtg aaaacagagg
    19501 taaatttgaa atgccggagt ttgctgaatt ttggcaaaaa ggctatgtgc tgttcccaga
    19561 gggcaaacct tgggttcgcc acgccgattt ccgtgaagat ccggaattgc acgcacttgg
    19621 cacaccgtcc ggctttatcg aaatttacag caacaaaatc gcctctttcg gctatgacga
    19681 ttgcaaaggt cacccaatgt ggtttgagaa agccgaacgt tcacacggcg gtaaaaattc
    19741 cgacaaattc ccgtactggt tgcaatcagt tcacccggac aaacgcttac actctcaact
    19801 ttgtgaatcg aaagaactgc gtgaaactta cagcgtgcaa gggcgtgaac cgctttacat
    19861 taacccacaa gatgccgcca aacacggcat tcaagacgga gatttagtgc gagtgtttaa
    19921 cgaccgtggg caagcgattg tgggggcggt gctttccgac aacttcccga ccggcgtagt
    19981 gcgtttacaa gaaggggctt ggtattcacc ccttgacgaa agcgtggggg cgattgacac
    20041 ctatggcgac ccgaacacaa tgaccctcga catcggcacg tccaagttgg cacaagcggt
    20101 ttccgccaac acttgcttgg tgaacatcga gaaatttatc ggcaatgccc cggctccgaa
    20161 tggctttaac ggtgcgattg aggtaacggc ttaatgacgt tggcaatcag tcgtgaagaa
    20221 cggcaattta tctatggctg gtttaacgca atgctcgccc gagaactttc ggacgagcag
    20281 ttaaatgcct tacaagcggg cgaatttgac gatttttttg catacctcag cgaattgggt
    20341 tttgccgaac aggttgcaaa atttcaagca gaagtgaccg cttgtaggca gctggaattt
    20401 cctcgtctag aactggcggc tgactttgcc caactgtttt tattggaagg caatctcagt
    20461 gccattcctt acgcctccgc ctatttaagc ggcgaagcgt tagcgaaaaa tttggcggaa
    20521 atggacagac tgctgggcga atttgggctg caagttaatc gagaaaccaa agagccgagc
    20581 gatcaccttt gcgtttatct cacccttttt gaccgcttgc ttgctgaaaa accgttggaa
    20641 acgcaacagc aatttctgca aaaccaactg atgagctggc tccctgcgtg gttcgccaaa
    20701 gccaaaaccg tcaaaactaa caccggcgtt tatccggcgt tgctaaggtt gtttgaacag
    20761 gtgttgctga aggaacaaag ataaagttat ttatttgaga atgatttgta ttgagcgaat
    20821 tgagaaagga agttaaaatt tcaacttcct tttttattgg ctgga
//
LOCUS       DANMBQ010000026        20221 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.026, whole genome shotgun sequence.
ACCESSION   DANMBQ010000026 DANMBQ010000000
VERSION     DANMBQ010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20221
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.026"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..562
                     /locus_tag="PXE92_000881"
     CDS             <1..562
                     /locus_tag="PXE92_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2572 family protein"
                     /protein_id="HDL5760147.1"
                     /translation="REKYLSDQYNFLALYPQDKTQICQKFQKEQISQADLSDKQFRFL
                     QYQFACQFHSLFKDKKPTKEKYIHFTHLADYLDLSNVPNQEIYTIHSLAELPSSSERE
                     PKIVLAKNAINENLPQEFYGIVITDYLFDITGKKMYGTLYSSYDNAREERNLTFKKEV
                     LAELEARYSAWRYLPYSEHLMGAVDD"
     gene            555..848
                     /locus_tag="PXE92_000882"
     CDS             555..848
                     /locus_tag="PXE92_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5374 domain-containing protein"
                     /protein_id="HDL5760148.1"
                     /translation="MIKYKAETALSLLVAITLFAIVVLSFSQWQSAQNHRLNQHFQQQ
                     QAVMILENQLALKLAGLDCESSITQNQIRYQIQCSGNRLTIRFPLGKIELNND"
     gene            897..4187
                     /gene="recC"
                     /locus_tag="PXE92_000883"
     CDS             897..4187
                     /gene="recC"
                     /locus_tag="PXE92_000883"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HDL5760149.1"
                     /translation="MFTLYQSNQISSLAEMLVKIQQVNPLEDPFEPETILIQSQGMAQ
                     WLQMQIAELNGVMGNCDFLYPTTFLWQQYRLLFPELPKENIFERSSLVWRIMRLLPSC
                     LTLSEFAPLKRYLGDQPNKEQYQLKLYQLSAKIAELFDQYLVYRPHWLVSWEEGNLQA
                     IENEIKIATAAKPIDFDLIRADMKWQSHLWQQIVSDLQSESDEQVFTTSHRAYLQQNY
                     FAKLDDLTETEKAKLPKRIFIFGISSFSPLQLAVFKKLSEHCDIHLFFFNPSEKYWGD
                     SVEEKVWQKLALSHKISQDDLDNLLAEQRNKLLNLWGKQGRDFLAQLIEFEPNTMDVF
                     VEPEENSNLNKLKKQIFSLENDATITDLTADNSLQIHSCHSPMREVEVLHNQLLNLFE
                     QDSTLLPKDIIVMSPDINKYAPYIDAVFSRYNTGNRDPRYIPFSLSDQAFTQVDPIIH
                     SFLQLLAMKESPFNAEELFDLLEVNAIQTRFGFSTEDIHTLRVWVRNAGVRSGVEIEQ
                     PHWQNYNSWENGLNRLLLGSSLKEEQGIWENTLAFGDSYGLNAELVGRLASFIEALLA
                     WVNFLQTPQPLAAWQQAIKNLTADLYQENAENAASILLLNNVNDQIIEQISATHFSDD
                     LQIEVLALLFEQQLSQHSQQLNFLVGRVNFATLLPMRAIPFKVICLLGMNEADFPRQQ
                     QINSFDLMQYAPKKGDRAKRDDDRYLFLEALLSAQQMFYISYIGQSQKDGKEMLPSIL
                     VSQLLDAMNEALTPECKQQLSDEVEVLVRKQPLSVFSKKNFTHPRDHAYNAEWIIKPT
                     VAVQDFLSEPLTNESVASLELDELISFVQNPIRFFFLKVLGISFNTYDDTIDESEIFE
                     MSGLDNYRILNELLTINLAQQQRFFAEEQLKGNLPASYFAQIATQDLIGKITEMQAAL
                     SHYLASESRILSVNREVELERQTLTLNGNIANLYQNEVVLWRVGHLRDKDKIQTWIYH
                     LLLCAYFPEKTVKFYYREGEQVGVLSFETVSQIEALSQLSIYLNAYLDGLSQAQLVIY
                     DRIEEYLKGDGTNSEQVLIDLAEKDERDGSYLHRLLAQTKELDSQAIHQRTQSWFSLM
                     NQKIAKGD"
     gene            4323..7268
                     /gene="ptrA"
                     /locus_tag="PXE92_000884"
     CDS             4323..7268
                     /gene="ptrA"
                     /locus_tag="PXE92_000884"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HDL5760150.1"
                     /translation="MKLSFLTQFVAAAFALNVMTYPAFAEVAKNSEKTTASQPQSQLG
                     FELIKQSINKSPNDKAIYQGIKLDNGMEVLLISDSQANKSLMSAIIPIGSMDDPISQQ
                     GLAHYLEHMILMGSKNYPETNSLDGFLTKNGGMNNASTASHRTAYYLQVNNEAFSEAV
                     TRLADTLAFPLLLETNAKKEVNAVNAEMVRAKSHDGHLLHSVNLATANPAHPATKFAV
                     GNKETLSDKPDSKLQTELEQFYKQHYSANLFKVVLYSNQSIEQMAKLAANTLGKMENK
                     HFSIPQTAEPRYRDEDKSVFIQYKPVKSNKMLVIGFDFPNDEMQFKHKTGKYIAYMLN
                     NNTDGTLSDYLIKQGLSDGGIEAVSSANIGRDRGSFDIYIELTDKGLSEQDQIISLVF
                     QQIEKIKQEGIQESYFSEVKESLKQDFQHLQVEKNMDFVEFIADQMLHFPLEHVIDQP
                     YLTETMDNEAIKAKLAAMNIDNARIMLVSDTAKTDKKTPYFEAGYSVAKITQEQKQKW
                     LDFSKNPQLNLPELNPYFTTDFTLNKVETGLTKPKLINDQAGNLIYTMPSVYFTNEPK
                     AKIGVGFNIRPRKDDLKSLTAASILGYMNNLAQTKLDFQSSVAGMNLSLAPAANGLAL
                     SAEGYTQNLAKLMLDSVKQFSRFEFNEDVLAQAKQRLHQELDRNEKENSLNQANAALS
                     RFASYPYFDVPKQREMIDSITLADIEQLRQRILQQSSGFKLLSVGNLSAEQVSALAED
                     LQAVIKNQKSANATGQYVDVSTSQRKINVIKSVPNEDNALLMAFMPNGYNELESLTRA
                     KLLRSIISRWYFDDLRTDKQLGYVVYATDNIIGKTAGIQFMVQSPNTTPAGILEHNER
                     FFTQSFERLKNLSDEEFGKYRDSLVEKLQYKPESLAEEFSEFGSDFSRNNPKFDRLQQ
                     VIELTKALTKADIVAFYQKAVIEKQGFVFVSQAVGTKTKAEDVAKFDGFEQIESIEKL
                     QREFEIKDY"
     gene            complement(7317..8963)
                     /locus_tag="PXE92_000885"
     CDS             complement(7317..8963)
                     /locus_tag="PXE92_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5760151.1"
                     /translation="MKFPTLTKISASVLAVLALAACDDKSNENKPTAAAAKPQTEKTF
                     VNCVSRSPTGFSPILMMDGLSYNASSQQIYNRLVEFVPGTTDIEPALAESWEISEDGL
                     TYTFKLRKGVKFHSNKDFTPSRELNADDVVFSFNRQLDKNHPYHTVSNGTYPYFNAMK
                     FPTLLKSVEKVDDSTVRITLTKRDASFLSSLGMDFTSIYSAEYADKMMKAGIPEAVDT
                     TPIGTGPFVFSGYVLDQASRYVANKEYWKGKPDIDRLIFEIVPDATTRYAKLQSGQCD
                     LMDFPNATDIEKMKNDPKINLLSQPGLNIAYVAFNTEKAPFDNVKVRQALNLAVDKKA
                     IIDVVYQGNGFAAKNPLPPTIWGYNDSLADSEYNVEKAKQLLAEAGFPNGFETELWVQ
                     PVVRASNPNPRRMSEIIQADWEKIGVKAKLVTYEWGDYIKRTKAGELTAGTYGWSGDN
                     GDPDNFLSPLFGTPNIGNSNYARFTNPELDALLEKALGSSDKAERTKLYEQAQVILRE
                     QAPWINVAHSINFAPTSKRVEGYKQSPFGYTYLYPVKIVD"
     gene            9039..11129
                     /locus_tag="PXE92_000886"
     CDS             9039..11129
                     /locus_tag="PXE92_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL5760152.1"
                     /translation="MIFANQSIELDTVNVIATRDPSKFADTPQKQTKDALLVKQATSV
                     AAALKALPNVDVQGGARAIVQKPSIRGLSDNRIVQVIDGVRQNFDLAHRGSYFVPMSL
                     IQEIEVIKGPSSSLWGSGALGGVVAMRTPNALDLLKNNDKFGAKIRQGYQTANNLSET
                     EASVFAANDRFDALLSGFYNNADNLRSGEGKELNNTGYKQAGGLVKFGWQINDTHRLE
                     LSHRHSQFKQTAPGNNEVENQFTDNDVSAQISAWHAANPGNPSNPVYLAKMLAFYGQL
                     HSSLGSVSYLSDQKITDKSTSLNYYFNPSNPYLSTQVTLYSNSTTENEHRKISGVEDQ
                     TKLSTRGVNIRNHSELSWFSLVYGVDYMLDKVATQRGRNNTDAQYRANPYDAKSKTTG
                     AYLIAHIPLFDEKVVFSPSVRYDRFDTSSETVKYKDSHWSPAAKLTWKATNWLDLTAK
                     YNEAFRAPSMQERFVSGSHFGTTVRGLPINNIFLTNPNLRPETAKNKEVTFNVHFDNV
                     ISQGDKFNFEATYFRNDVKDLINLQVFKANPTSPMEFIPTRSQYQNIANARLSGIELQ
                     TRYQTERLAVFANYGSTKGKDKDSGEALSNIAASKIGFGVNYAVVQDKFTVGANVTRY
                     QAQHRVPKNHGVTYQGYTLTDLHATYAPLKGEWKNLRLDVAVENLFDKKYQPAFSLME
                     GSGRNVKLSAAYSF"
     gene            11200..12888
                     /locus_tag="PXE92_000887"
     CDS             11200..12888
                     /locus_tag="PXE92_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL5760153.1"
                     /translation="MKFYPSLIASAVSFAVVLSGQAAVNVPDAGSLQRELDQRQAQQK
                     VKPSGEWFNQAAKAPYTATDGQELTFPLTQVQVFDRTNQEISTPELAPILANYVGKAV
                     SLTDLSNLANEITEFYRSHNYLVAKAILPPQEIEQGKVKILLFKGNVGEVRLQNQSAL
                     SDKFVARLANTTVNGSEFILKDELEKFALTMNDVPGVNTGLELSAGKQAGEANLLIKL
                     QNAERFSGYVSADNQGNKNTGRYRLATGIKANNLIGWGDELKVDLMSSNNANLKNARL
                     DYSSLIDGYATRLGLTANYLDYELGGNFKALQSQGHTHNLGAYVLHPTIRLPDFRLNT
                     KVSFNHQRLTDKQQAVNVAQKRQVNSLTVGINGSWNSLKDGTSYFSLSALFGNLANHT
                     NEQAHYVATDFQPKSRFTVYQYSLSHEQALPKSFAFNLGVNGQFADKTLDSSQKMLLG
                     GLYGVRGHQAGVASVDEGHLVQTELKHYLPLFSKSLLTSSVFYDYGWGKYYKHSGFLA
                     RGVNNSVKLQSIGAGLSLSEAGSYAINASVAKPLGKKIENADKHQFWFSAIKTF"
     gene            12900..15716
                     /locus_tag="PXE92_000888"
     CDS             12900..15716
                     /locus_tag="PXE92_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HDL5760154.1"
                     /translation="MFKRNAISLCILTACSGLAYANTADLPQGERVRVGTATIERTTD
                     KMTVNQSSNKVQIDWNSFDIGKNKEVEFKQPTEMAVAYNRVTGGNASQIQGKLTANGK
                     VYLANPNGVLITKDAEVNVGGLLVTTKDLEKISENGTKDKFSRKLAKEGKILNQGKIT
                     AKGERAFVVLVGDDVANEGEINAKNYYHKETKKVTECYDDSWSLVKQCYDFDKEIVKS
                     TSGEVHLSSGENVTFTLSDRYIDVALDDNTVNSIIKNDGAIIANGDITLTAKGRNQAL
                     DSLIINNGVLQANKVQNKNGTIILSAGETQLHEKSQIKGEKVSFAEASYYGPTEDIKV
                     VSKTGSKVTAPVIDFKGKTVNIQGEFGREDSTDLYNDELQILKTTVNIEVPNTEDIRI
                     ADTDNGGSGSFIQAGALASLLANNGRVNVQGKGFDVSGKLNVNAFKQTDSVLKFINQA
                     GINIHNADIHANGRLFFVTNLPNDTDFQSNIRITDSKINLGNGSMGFGRSSKRWEMHD
                     VVRRADTELRKKFNLDMKNVELNQVDDFVVAGGFQQVNLDNVKARGKTNFYLDSGNSR
                     MFVGEQIYEYGVTDIEKRTQLANLDQRRKRWNSDNYDETDLNWEYNQRFDGFAAKHNH
                     RAPIADTEINIANSDISLDNGFVHLMAEKINLDDSKINITFNQDNSLDESTQINRLGL
                     NGKVSMKNSHINVVGDEKDGISPARHYATMFLVGELLGEKSSIFLKSHQGAVLRTDSN
                     VTIAGKNSKDDLKITAITTGKKMGNEIIGPDGLPTSEDNDANASNTAFAIGYEPNATA
                     IVENASITALAPNGGLAYTGTSKTQIDAKDNATFTFFEKPRAGYDKLLGDIKGNPDKL
                     TPRDFARLYDNIKGIKASSLSEQQLGLADTAKKTSEHTLANSLDVENLVSVTVCDEQN
                     KCEERMLGNKNTNAKVIVGDIKFE"
     gene            15839..15970
                     /locus_tag="PXE92_000889"
                     /pseudo
     CDS             15839..15970
                     /locus_tag="PXE92_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(16025..16786)
                     /locus_tag="PXE92_000890"
     CDS             complement(16025..16786)
                     /locus_tag="PXE92_000890"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDL5760155.1"
                     /translation="MKLNQAQIQNALICGQAVVFDEIDSTNEYLLTHHQRLENGTVCL
                     AEKQTAGRGRRGRTWYSPESENLYFSILWHYPMEQAADLPPLSLVVALIIAESLTVQN
                     VKDIQIKWPNDIYYQGKKMGGILLETQANRNGLDVVIGIGLNLGMAKVDENIVTQAWA
                     DLSQYHFNRNELVCRLAYELQKNLKIYPLVGFAHYAERWQSFDLFRHKAVKLITEAEE
                     IHGISQGINEQGELILKQGDNLRYFGIGEISLRAD"
     gene            complement(16798..17829)
                     /gene="murB"
                     /locus_tag="PXE92_000891"
     CDS             complement(16798..17829)
                     /gene="murB"
                     /locus_tag="PXE92_000891"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDL5760156.1"
                     /translation="MMKHSLTPFHTFHLPAKATQIIEFTTVEQLLSEWQKAFNAQLPI
                     LILGQGSNVLFLEDFDGVVLVNKLKGITHHEDEHFHYLHVQGGENWHELVKWTLAHNI
                     AGIENLALIPGVASSAPIQNIGAYGVEFEQVCDFVEVLNLRSGELFKLSKSECEFGYR
                     ESVFKHQYRDEFAIISVGLKLAKAWKPVLSYGSLAQLNPETVTPIQIFDEVCAVRSSK
                     LPNPDEFGNAGSFFKNPVISNEQFAPIQAKFPAIPHYPQADGTVKLAAGWLIDQTGLK
                     DLQIGGAAVHTQQALVLINKENATGQDVLALAKTVRQRVKEKFGVEIQPEVRFIGKNG
                     EVDSEKITR"
     gene            complement(17933..18607)
                     /gene="crp"
                     /locus_tag="PXE92_000892"
     CDS             complement(17933..18607)
                     /gene="crp"
                     /locus_tag="PXE92_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010787261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HDL5760157.1"
                     /translation="MQDMTLSTAPLENVTPPPSIHDPAVEWFLTHCHIHRYPAKYTLI
                     HAGEDAESLFYIVNGSVSVYIKDDETKEMLLTNLGTGEFVGELSLFEEKVQQRTAYVR
                     TKGPCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRQTSRQVGNLAFLDVAGRIAQ
                     TLLNLAKMPDAMTHPEGMQIKITRQEIGQMVGCSRETVGRIIKMLEDEGLISAHGKTI
                     VVYGAR"
     gene            complement(18669..18887)
                     /locus_tag="PXE92_000893"
     CDS             complement(18669..18887)
                     /locus_tag="PXE92_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HDL5760158.1"
                     /translation="MIIPWQELEESTLHNILDSFILREGTDYGERELSLAEKRERLLT
                     QLKADKVVIVWSELHESLDIKDKKSFLG"
     gene            complement(18890..19495)
                     /gene="slmA"
                     /locus_tag="PXE92_000894"
     CDS             complement(18890..19495)
                     /gene="slmA"
                     /locus_tag="PXE92_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HDL5760159.1"
                     /translation="MTEPKIKMPKKSVVERRQQVLEVLISLLNSEEGMQRITTERLAA
                     AVGVSEGALYRYFPSKTKMFEALIEKIEQTLTSYIHANKRQDSSANSVRAILYVILEF
                     ARKNPGVTRILTGHALMFEEELLKARVAKFFDNLELQFANILQLSKLRERKSFEDERA
                     LAGYLVNFCEGQFLRLVRSNFSYNQHQHFEKQWAFIKPLFD"
     gene            complement(19507..19962)
                     /gene="dut"
                     /locus_tag="PXE92_000895"
     CDS             complement(19507..19962)
                     /gene="dut"
                     /locus_tag="PXE92_000895"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HDL5760160.1"
                     /translation="MKQIDLKILDSRIGNEFPLPAYATEGSAGLDLRAMLNEPLTVKA
                     GETVLIPTGISIYIADPNLAAVILPRSGLGHKNGIVLGNLVGLIDSDYQGELKVSLWN
                     RSQADFTVNVGDRIAQLVFVPVVQASFNIVQEFEQTDRGEGGFGHSGKQ"
     gene            complement(19996..>20221)
                     /locus_tag="PXE92_000896"
     CDS             complement(19996..>20221)
                     /locus_tag="PXE92_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL5760161.1"
                     /translation="TEHLLDDIAQQKISPNYIPHIIHFTGGIKPLEGKFNSSYVENVA
                     SLFRFYHNTSWEILTELPLGTIQLKPFITE"
BASE COUNT         6060 a         4198 c         4399 g         5564 t
ORIGIN      
        1 tagagagaaa tacctttccg atcaatataa ttttttagcg ttatatccac aagataaaac
       61 gcaaatatgc caaaaatttc aaaaagagca gatcagccaa gcggatttat ccgataaaca
      121 attcaggttt ttacagtatc aatttgcctg ccaattccat agtttattta aagataaaaa
      181 accgactaaa gagaaatata ttcactttac ccatttggcg gattatttag atttatcaaa
      241 tgtgccaaac caagagattt atactattca ttctttagct gaattaccta gtagcagtga
      301 acgtgagcct aaaattgtgc ttgctaaaaa cgcaattaat gaaaacttac cgcaagagtt
      361 ttacggcatt gtgataaccg actatctgtt tgatattacc ggcaaaaaaa tgtacggcac
      421 gctttattcc tcttatgata atgcccgaga ggagcgaaat ttaacgttta aaaaagaggt
      481 actggcagag cttgaggcga ggtattccgc ttggcgatat ttgccatatt ccgaacattt
      541 gatgggagcg gttgatgatt aaatataaag cagaaacggc tttgtcgctt ttggttgcca
      601 tcacgctatt tgcgattgtg gtgttgagtt tcagccagtg gcaatcggca caaaaccaca
      661 ggctaaatca acatttccaa cagcaacaag cggttatgat tttagaaaat cagcttgccc
      721 tcaaattagc cgggttagat tgtgaatcaa gtattactca aaatcagatt cgctatcaga
      781 ttcaatgctc tggcaatcgc ttaaccattc gctttccgtt aggcaaaatt gagctgaata
      841 atgattgaat cgtccctcgc tttggaggac aataattcaa ttagcgaggc gttattatgt
      901 ttacacttta ccaatccaac caaatttcat cactggcgga gatgctggtg aaaatccagc
      961 aggtaaaccc acttgaagat ccgtttgagc cggaaaccat tttgatccaa agtcagggaa
     1021 tggcacagtg gctacaaatg cagattgctg aattaaacgg tgtgatgggg aattgcgatt
     1081 ttctctaccc tactacattt ttatggcaac agtatcggct gttgttcccg gagctgccga
     1141 aagagaatat ttttgagcgt agttcgttgg tttggcggat tatgcggtta ttgccgagtt
     1201 gcttgacact atcggagttt gctccgctaa agcgttattt aggtgatcaa cctaataaag
     1261 aacagtatca gcttaagctc tatcaacttt ctgccaaaat tgccgaattg ttcgaccaat
     1321 atttggtgta tcgcccccat tggctggtta gctgggaaga gggcaactta caagcgatcg
     1381 aaaatgagat aaaaattgca actgccgcta agccgattga ttttgactta attcgagccg
     1441 atatgaaatg gcaaagccat ttatggcaac agattgtatc tgatctgcaa tcggaatctg
     1501 atgagcaggt ttttactacc tcccaccgtg cctatttgca acaaaattac ttcgctaagt
     1561 tagatgacct tactgaaacg gaaaaagcca aattgccaaa acgcattttc atttttggga
     1621 tttcgtcctt ctcgccatta cagttagcgg tgtttaagaa actcagcgag cattgcgata
     1681 ttcacctgtt cttttttaac ccaagcgaaa aatattgggg cgacagtgtg gaagaaaaag
     1741 tgtggcaaaa attggcgtta agccacaaga tttcgcaaga cgatctggat aacttattgg
     1801 cggagcaaag aaataaacta ctgaatcttt ggggcaaaca agggcgggat ttcttagctc
     1861 aattaatcga atttgagccg aataccatgg atgtctttgt cgaaccagag gaaaacagca
     1921 acctcaataa actcaaaaaa cagattttca gcttagaaaa tgacgccact attaccgatt
     1981 taaccgccga taattcactc caaattcatt cgtgccacag cccaatgcgg gaagtggaag
     2041 tgttgcataa ccagctcctg aatttgtttg agcaagatag cactttgctg ccgaaagata
     2101 ttattgtgat gtcgccggat attaataaat acgctcctta cattgatgcg gtgttttctc
     2161 gctacaatac gggtaatcgg gatcctcgct atattccttt ttcattatcc gaccaagcat
     2221 ttacgcaggt tgatccgatt atccacagtt tcctgcaact gctggcaatg aaagaaagcc
     2281 cgtttaatgc cgaagaactg tttgatttac tggaagtgaa tgcgatccaa acccgttttg
     2341 gctttagtac ggaagatatt cataccctgc gggtttgggt gagaaatgcc ggcgtacgtt
     2401 cgggtgtaga aatcgagcaa cctcactggc aaaactacaa ttcgtgggaa aacgggctaa
     2461 accgtttatt gcttggctca agcctgaaag aagagcaggg gatttgggaa aacacccttg
     2521 cctttgggga tagctatggc ttaaatgccg agctggtggg gcgacttgcc tcttttattg
     2581 aggctttatt agcgtgggta aactttctgc aaacgccaca gccgttggca gcgtggcagc
     2641 aggcaataaa aaatttgact gctgatctgt atcaagaaaa tgccgaaaat gctgcatcaa
     2701 ttttattgtt gaataatgtg aatgatcaga ttatcgagca aatttccgca acccattttt
     2761 cagacgatct gcaaattgag gttttagcct tattgtttga gcagcagctc agccaacatt
     2821 cacagcagct taatttcttg gtcggacggg tgaattttgc caccttgctt ccgatgcggg
     2881 cgattccgtt taaggtaatt tgcttgctgg gtatgaatga ggcagatttc cctcgccaac
     2941 aacaaatcaa tagctttgat ttaatgcagt acgccccgaa aaagggagac cgtgccaaac
     3001 gtgatgatga ccgctacttg ttcttagaag ccttactttc cgctcagcaa atgttttaca
     3061 tcagctatat cgggcagtcg caaaaagacg gcaaagagat gctaccgtcg attttggttt
     3121 cccaactgtt agatgcaatg aatgaagctt taacgcctga atgcaagcaa caattaagcg
     3181 atgaagtgga agttttggtc agaaaacaac ctttaagtgt gtttagcaaa aagaatttta
     3241 cccacccacg agatcacgct tataacgcag agtggattat caagccgact gttgccgtac
     3301 aagattttct tagtgagcct ttaaccaatg aaagcgtggc ttcgctagaa cttgatgaat
     3361 taatctcttt tgtacaaaac ccgattaggt ttttctttct aaaagtgttg gggatttcgt
     3421 ttaacactta tgatgacacc attgatgaaa gcgaaatttt tgagatgtcg gggctggata
     3481 actaccggat tttaaacgaa ttattaacga taaatttagc acaacagcaa cgtttttttg
     3541 ccgaagagca actcaaaggc aatttacctg cttcttattt tgctcaaatt gccacacaag
     3601 atttgatcgg caaaattacc gaaatgcaag cggcgttaag ccactattta gccagcgaaa
     3661 gccgtatttt gagtgttaat cgggaggttg agctggaacg ccaaaccctc accctaaacg
     3721 gcaatattgc caacctatat cagaatgaag tggtgctatg gcgagtaggg catttacgag
     3781 ataaagacaa gattcagact tggatctacc atttattatt gtgtgcctat ttccctgaaa
     3841 aaacggtgaa attctattac cgagagggtg agcaagttgg tgtgttgagc tttgaaaccg
     3901 tctcgcagat agaggcatta tcgcaattaa gcatttattt gaatgcttat ttggacggat
     3961 tatcgcaagc ccagttagtg atctacgacc gaattgagga atatctcaaa ggtgatggca
     4021 caaacagcga acaagttctt atcgatttag cagagaaaga tgagcgagac ggcagctatc
     4081 tccatcggct tctcgctcaa actaaagagc tggattctca agcgattcac caacgtactc
     4141 aaagctggtt tagcttaatg aatcagaaaa tagcgaaagg cgattaacta caagcggtcg
     4201 tttttggctg aaaatttgca aaatgagaag gcgaataata attcgcctac ctataaaaat
     4261 agaatttttt ccgtatttta ctgtcaattt attactacaa tgctaatttc aaaaggagat
     4321 gtatgaaatt atcttttctt acccaattcg ttgcagcggc ttttgccctc aatgtgatga
     4381 cttaccctgc atttgcggaa gttgcaaaaa attctgaaaa aacgaccgct agtcaacccc
     4441 aatcccaact cggttttgag ctgattaaac agagcattaa caaaagcccg aatgataaag
     4501 cgatttatca aggtattaaa cttgataatg gaatggaagt gctactgatt tccgacagtc
     4561 aagcgaataa atcgttgatg tctgccatta ttccgattgg ctcaatggat gacccgattt
     4621 ctcagcaagg tttagcccac tatcttgagc atatgatctt gatgggctcg aaaaactatc
     4681 cggaaaccaa cagcttagac ggttttttaa ccaaaaatgg cggtatgaat aatgcctcga
     4741 ctgcttctca ccgcacggcg tattatctac aagtcaataa cgaagccttt agcgaagcgg
     4801 taacacgact ggcggatacg ttagctttcc cgttattgct ggaaaccaac gccaagaaag
     4861 aggttaatgc ggtcaatgcg gagatggtgc gagctaaatc gcacgatggg catttattgc
     4921 acagtgttaa tttagccacc gcaaacccgg ctcatcctgc taccaaattt gcggtaggca
     4981 ataaagagac gttatctgac aagccggata gcaaattaca aaccgagttg gagcaatttt
     5041 ataaacagca ttattctgcg aatctgttta aagtggtgct ttattccaat caatcgattg
     5101 agcagatggc aaaattggca gccaacactt taggcaaaat ggaaaacaaa catttcagca
     5161 taccgcaaac cgctgagcca cgttatcgtg atgaggacaa atcggtattt attcaatata
     5221 agccggtgaa atccaacaaa atgttagtca ttggctttga ttttccgaat gacgaaatgc
     5281 agtttaagca caaaaccggt aaatatattg cttatatgtt aaacaataat actgacggca
     5341 cgctttcgga ttacttgatt aaacaggggt tgtctgacgg cggtattgag gcggttagca
     5401 gtgccaatat cgggcgggat cgaggctcgt ttgacatcta tattgaactg acagacaaag
     5461 gtttgagcga gcaagatcaa attatttcat tggttttcca acaaattgag aagatcaaac
     5521 aagaaggcat tcaagagagc tattttagcg aagtgaaaga gagcctgaag caggatttcc
     5581 aacatttgca agtggaaaaa aatatggatt tcgtggaatt tattgccgat caaatgctcc
     5641 atttcccgtt agaacacgtt atcgatcagc cttatctgac cgaaacaatg gataacgagg
     5701 caattaaagc aaaattggcg gcaatgaata ttgataatgc ccgcattatg ttagtcagcg
     5761 atactgccaa aaccgacaag aaaacccctt attttgaagc aggttattcg gtggcaaaaa
     5821 tcacgcaaga acaaaagcaa aaatggctgg atttcagtaa aaatccacag ctcaatttgc
     5881 ctgaattgaa cccgtatttc actaccgatt ttaccttaaa caaggtcgaa accggcttaa
     5941 ctaaaccgaa attgattaac gaccaagcgg ggaatttaat ctatacaatg ccgagcgtgt
     6001 attttaccaa tgaaccgaag gctaaaatcg gcgttggctt taatattcgc ccgagaaaag
     6061 atgacttaaa gagcctgacc gcagcgtcta ttttgggtta tatgaacaat ttagcccaaa
     6121 ccaagttaga ttttcagtct tcggtggcgg gtatgaattt aagtttagct ccggcggcaa
     6181 acggtttagc cttaagtgca gagggttata cccaaaatct ggctaaatta atgctagaca
     6241 gcgtaaaaca gttcagccgc tttgagttta acgaagacgt gttggcacag gctaaacaac
     6301 gtttgcacca agagctggat cgtaacgaaa aagaaaacag ccttaatcaa gctaatgcag
     6361 cattaagccg ttttgcctct tacccttatt ttgatgtgcc gaaacagcgt gagatgattg
     6421 atagcattac ccttgcggat attgagcaac tacgccagcg aattttgcag cagagcagcg
     6481 gctttaagtt gttatcggtg gggaatttgt cggctgagca ggtttctgct ctggcagagg
     6541 atttacaagc ggtcataaaa aaccaaaaat ctgcaaatgc taccggacag tatgtggatg
     6601 tgagtaccag tcagcgtaag attaatgtga ttaaaagcgt gccgaatgaa gataatgcgt
     6661 tgctaatggc atttatgccg aacggctata acgagctgga aagccttact cgagccaaat
     6721 tgctcagaag cattatttcc cgttggtatt ttgatgattt gcgtactgat aagcaactag
     6781 gctatgtggt ttatgcgaca gataatatca tcgggaaaac cgccggtatc cagtttatgg
     6841 tacaaagccc gaataccaca ccggcaggga ttttagagca taacgaacgt ttctttacac
     6901 aaagtttcga acgtttaaaa aatctatctg atgaggaatt tggaaaatat cgtgatagcc
     6961 tagtggaaaa actgcaatat aaaccggagt ctttagcgga agagttttct gagttcggtt
     7021 cagactttag cagaaataac ccgaaatttg accgcttgca acaggtgatc gaattaacca
     7081 aagcactcac caaagcagat attgtggcat tttaccaaaa agctgtgatt gaaaagcaag
     7141 gcttcgtgtt tgtcagccaa gctgtcggca ccaaaaccaa agctgaagac gttgcgaaat
     7201 ttgacggttt tgaacagatc gaaagcattg aaaagctaca acgagagttt gagattaagg
     7261 attattagag agttattaga gagagttagg ggcgaaaaat tttcgcccct cattttttaa
     7321 tccacaattt tcaccggata taagtaagta tatccgaacg gactttgttt gtagccttca
     7381 acacgtttgc tggttggggc aaagttaatt gagtgagcca cgttaatcca cggagcttgc
     7441 tctcttaaga taacctgtgc ctgctcgtat aacttagtac gttctgcttt atcagatgag
     7501 cctaatgctt tttctaataa cgcatctaac tcagggttag taaagcgagc atagttactg
     7561 ttgccgatat ttggcgtgcc gaatagtggc gataagaagt tatccggatc gccgttatcg
     7621 cccgaccaac cgtaagttcc ggcggttaat tcaccggctt tggtacgctt gatgtaatca
     7681 ccccattcat aggtgactaa ttttgctttt acgccgattt tttcccagtc ggcttgaata
     7741 atttcagaca tacggcgtgg gttcgggtta gaagcacgca ccacaggctg cacccataat
     7801 tcggtttcaa aaccgttcgg gaagcctgct tcagctaata gttgcttcgc tttttccacg
     7861 ttatattctg aatccgctaa gctgtcgtta tagccccaaa tggttggcgg aagtgggttt
     7921 ttcgccgcaa aaccgttacc ttggtaaact acatcaataa tcgctttttt atccactgct
     7981 aagtttaacg cttggcgaac tttcacgtta tcaaacggag ctttttcggt attgaatgcc
     8041 acataagcaa tgttcaaacc cggttgagaa agtaaattga ttttcggatc atttttcatt
     8101 ttctcaatgt cggttgcatt tgggaagtcc attaaatcac attgaccgga ttgtaatttc
     8161 gcataacggg ttgttgcatc cggcacgatc tcaaaaatca aacggtcaat gtcaggctta
     8221 cctttccaat actctttgtt tgctacataa cgactggctt ggtctagcac ataaccgcta
     8281 aacacaaacg gacctgtgcc gattggcgtg gtatctaccg cttcaggtat gccggctttc
     8341 atcattttat ccgcatattc cgccgaataa atggaggtga aatccatacc aaggctggat
     8401 aagaatgacg catcacgttt ggttaaggta atacgaacgg tgctgtcgtc cactttttcc
     8461 accgatttca ataatgtcgg gaatttcatt gcgttgaaat acggataagt gccgttagag
     8521 acggtgtgat acggatgatt tttatctaac tgacggttaa atgaaaatac tacatcgtcc
     8581 gcattcaatt cacggcttgg agtgaagtct ttgtttgaat ggaatttcac gcctttgcgt
     8641 aatttaaagg tgtaagttaa gccgtcttcg ctgatttccc agctttctgc caatgccggt
     8701 tcaatatcgg ttgtacccgg cacaaattcc accaagcggt tgtaaatttg ttgcgagctg
     8761 gcgttataag ataaaccgtc catcattaaa atcgggctaa aaccggttgg cgaacggcta
     8821 acgcagttta caaaggtttt ctcggtttgc ggttttgctg ctgccgcagt aggtttattt
     8881 tcgttgcttt tatcatcgca agccgctaga gctaataccg ctaaaacgct tgcactaatt
     8941 ttggttaacg ttggaaattt catattattc tccgcttaat cttaggatta acttacgaag
     9001 attacctttt ccacaatgag gagtaaagaa caaaaagcat tatttttgca aatcaatcca
     9061 tagaattaga taccgtcaac gtcattgcca cccgtgatcc aagtaaattt gccgatacgc
     9121 cacaaaaaca aactaaagat gcacttttgg taaaacaagc gacgagtgtg gcggcggcat
     9181 taaaagcgtt gccgaatgtg gatgtgcaag gaggggcccg tgcgattgtg cagaagccgt
     9241 ctattcgtgg gttgagcgat aatcgtattg tgcaggtgat tgacggagtg cgtcagaatt
     9301 ttgatttggc tcaccgtggt tcttattttg tgccgatgtc attgattcaa gaaattgaag
     9361 taatcaaagg tccaagcagc tcgttgtggg ggagcggtgc cttaggtggg gtggtggcaa
     9421 tgcgcacacc gaatgcgttg gatttattga aaaataatga caaattcggg gcaaaaatcc
     9481 gtcaaggtta tcaaacggcg aataatcttt ccgaaaccga agcctcggtg tttgcagcaa
     9541 atgatcggtt tgatgccctg ctgagtggtt tctacaataa tgctgacaat ttgcgtagcg
     9601 gtgaaggcaa ggaactgaat aacacgggct ataagcaagc cggcggttta gtaaaattcg
     9661 gctggcaaat taacgatact catcgtttgg aattatccca tcgtcatagc caatttaaac
     9721 aaactgcacc gggtaataac gaggtagaaa atcaatttac cgataatgat gttagtgcac
     9781 aaattagtgc ttggcatgcg gctaatcctg gaaatccaag taatccagta tatcttgcga
     9841 aaatgttagc cttttacggt caattacatt caagtcttgg tagtgtgagt tatttaagtg
     9901 atcaaaaaat taccgataaa agcacctcac ttaactacta tttcaaccca agcaatcctt
     9961 atttgagcac acaagtgaca ttatatagca atagtaccac tgaaaacgaa catcgaaaaa
    10021 taagtggtgt ggaagatcaa actaaactaa gcactcgtgg tgtgaatatc cgtaatcatt
    10081 ccgaattgtc ttggttctcc ttggtgtatg gcgtggatta tatgttggat aaagtagcca
    10141 ctcagcgtgg gagaaataat acggacgcac aataccgtgc taatccttat gatgctaaat
    10201 ctaaaactac aggtgcttat ttaattgcac atattccgct gtttgatgaa aaagtggtct
    10261 tttctccgag cgtgcgttac gaccgtttcg atacttcaag tgaaacggtg aaatataaag
    10321 acagccattg gtctcctgct gcaaaactta cttggaaagc gacaaattgg ttggatttaa
    10381 ccgcgaaata taacgaagct ttcagagccc cttctatgca agaacgattt gtgagcgggt
    10441 ctcattttgg taccacagtg agaggattac ctattaataa tattttctta actaacccta
    10501 atttacgccc ggaaacggca aaaaataagg aagtaacctt caatgtacat tttgataatg
    10561 tcatctcgca aggagataaa tttaactttg aagcgactta tttccgtaat gatgtgaagg
    10621 atttgattaa tcttcaagta ttcaaagcaa atcctacaag cccaatggaa tttattccca
    10681 ctcgttccca atatcaaaat attgcgaatg cacgtttgag tggtattgaa ttacaaactc
    10741 gttatcaaac tgaacgtttg gcagtttttg ctaactacgg tagtacaaaa ggtaaagata
    10801 aagacagcgg ggaagccttg tcgaacattg ctgcaagcaa aatcggcttc ggggtcaatt
    10861 atgccgtggt gcaagacaaa ttcacggtgg gggcaaacgt aacccgttat caagcacaac
    10921 atcgtgtgcc gaaaaaccac ggcgtgactt accaaggcta tacgctgacc gatctacacg
    10981 ccacttacgc cccattaaaa ggcgaatgga aaaacctgcg tttagacgtg gcggttgaaa
    11041 acctattcga taaaaaatac caaccggcat tcagcttaat ggaaggcagc ggtcgtaatg
    11101 tgaaactcag tgcggcttac agcttctaat gtctttaacg gaagacggca caagcggtcg
    11161 ttttccggtt attttttgca atattaaaag ggagttacta tgaaatttta tccgtcgctg
    11221 atcgcaagtg cggtcagttt tgccgttgtt ttgagtggac aagcggcagt gaatgtgccg
    11281 gatgccggct cgttacagcg tgaattagac caacgtcaag ctcaacaaaa agtcaaaccg
    11341 agtggcgaat ggtttaatca agcggcaaaa gcaccttata ccgcaacgga cggtcaagaa
    11401 ctgacatttc cattaactca ggtacaagtt tttgatcgaa ccaaccaaga aatctctacc
    11461 ccggaattag ccccgatttt ggcaaactat gtgggtaaag cggtttcgct gaccgattta
    11521 agcaacttgg caaatgagat caccgagttt tatcgtagcc acaattatct ggtggcaaaa
    11581 gccattttac cgccacagga aattgaacaa ggtaaggtga aaatcctgtt gtttaaaggc
    11641 aatgtcggtg aagtgcggtt acaaaatcag agtgctttaa gcgataaatt tgttgcacgc
    11701 cttgccaaca ccacagtgaa tggttcggaa tttatcctaa aagacgaatt ggaaaaattt
    11761 gccctcacga tgaatgatgt tcccggggtg aataccggct tggagctttc tgccggtaag
    11821 caagcaggcg aggcgaattt gctgattaag ctccaaaatg ccgagcgttt ctcaggctat
    11881 gtatcggcag ataaccaagg caataaaaat accggacgtt accgtttagc cacagggata
    11941 aaagccaata atctgatagg ttggggcgat gagttgaaag tggatttgat gagttccaac
    12001 aacgctaatt taaaaaatgc gcgtttggat tattcgagct tgattgacgg ctacgctacc
    12061 cgtttgggct taacggcgaa ttatctcgac tacgaattag gcggtaactt taaagccctg
    12121 caatcccaag ggcatactca caatcttggg gcttatgtgt tgcacccgac aatccgcttg
    12181 ccggattttc ggttaaacac caaagtcagc tttaatcatc aacgtttaac cgacaaacaa
    12241 caagcggtca atgtggcaca aaaacgccaa gtaaacagct taacggtggg cattaacggg
    12301 tcgtggaatt cgcttaaaga cggcacaagc tatttctctc tgtctgcctt gttcggcaat
    12361 ttagctaacc acaccaacga gcaagcgcat tatgtggcaa cagattttca gcccaaatcc
    12421 cgttttacgg tctatcaata cagcctgtct cacgaacaag cgctgccaaa atcctttgcc
    12481 ttcaaccttg gcgtgaacgg gcagtttgcg gataaaaccc tcgacagctc acaaaaaatg
    12541 ttactgggcg gtttatacgg cgtgcgtggt catcaagccg gtgtcgcttc ggtggatgag
    12601 gggcatttag tgcaaaccga actcaagcat tatttaccgc tcttttccaa aagcctgctg
    12661 accagctcgg tcttctatga ttatggttgg ggaaaatact ataaacacag cggatttttg
    12721 gcgcgtggtg taaacaatag cgtgaaatta cagagtatcg gagcagggct ttcgctctct
    12781 gaagcaggca gttatgccat taacgccagt gttgccaaac cgctgggtaa aaaaatcgag
    12841 aatgcagata aacaccaatt ctggttctcc gccatcaaaa ccttctaagg agacaaacta
    12901 tgtttaaacg taatgcaatt tctctctgca ttttgaccgc ttgcagcggt ttagcctatg
    12961 ccaatacagc agatttgccg caaggtgaaa gggtgcgtgt cgggacggca acgattgagc
    13021 gcacaaccga taaaatgacc gtgaatcaat ccagcaataa agtacaaatt gattggaaca
    13081 gctttgatat tggtaagaat aaagaagtgg aattcaaaca gccgacagag atggcggtgg
    13141 catataaccg tgttaccggc ggaaacgcca gtcaaattca aggcaagctg accgcaaacg
    13201 gcaaagtgta tttagccaac ccgaacggtg tactcatcac caaagatgcg gaagtgaatg
    13261 tgggcggttt gttagtgacc acaaaagatt tagaaaaaat cagcgaaaac ggcacaaaag
    13321 ataaattcag tcgcaaatta gcgaaagaag gcaaaattct taaccaaggt aaaattacgg
    13381 ccaaaggcga gcgggctttt gtggtattgg tgggcgacga tgtggctaat gaaggggaaa
    13441 ttaacgccaa aaattattac cacaaagaaa cgaaaaaagt caccgaatgt tatgacgatt
    13501 cttggagctt ggtaaaacaa tgctacgatt ttgataaaga aatcgtgaaa agtaccagtg
    13561 gagaagtgca tttatcctcc ggagaaaatg tcacctttac tttaagcgac cgctatattg
    13621 atgtggcgtt agacgataat acggtcaata gcattatcaa aaatgacggg gcaatcatcg
    13681 ccaatggtga cattaccctc actgccaaag ggcgaaatca agccttagac agcttaatta
    13741 tcaataacgg cgtattgcaa gccaataagg tgcaaaataa aaacggtacg atcattttat
    13801 ctgccggtga aacccaatta cacgaaaaaa gccaaattaa aggcgagaaa gtgagctttg
    13861 ccgaagcttc ttattacggt ccgacagaag acattaaagt ggtttccaaa accggctcaa
    13921 aagtgaccgc acctgtgatc gatttcaaag gtaaaaccgt gaatattcaa ggggaatttg
    13981 ggcgtgaaga cagcaccgat ctctataacg atgaactaca aatcctcaaa accacggtga
    14041 atattgaagt cccgaatacg gaagatattc gcattgcaga taccgacaac ggaggtagcg
    14101 gttcctttat acaagcgggt gctttagcct cattacttgc aaataacgga cgggttaatg
    14161 tacagggcaa aggttttgat gtctcaggca agttgaatgt gaatgccttt aaacaaacgg
    14221 attccgtgct gaaatttatc aatcaggcgg gcatcaatat ccacaatgcc gatattcacg
    14281 caaacgggcg tttattcttt gtgacaaact tgccgaatga caccgatttc caatcgaata
    14341 tccgcattac cgacagcaaa atcaacttag gcaacggctc aatgggcttt ggtcgcagta
    14401 gcaaacgttg ggaaatgcac gatgtggttc gacgtgccga tacggaactg cgtaaaaaat
    14461 tcaatctgga tatgaaaaac gtggaattaa accaagtgga tgattttgtg gtagcgggcg
    14521 gtttccaaca agttaatttg gataacgtga aagcccgtgg caaaaccaac ttctatctgg
    14581 attccggcaa ctcccgcatg tttgtcggtg agcagattta tgaatatggc gtaaccgata
    14641 ttgaaaaacg cacccaattg gcgaatttag accagcgtag aaaacgttgg aattcggata
    14701 actatgatga gaccgatctc aactgggaat acaaccaacg ctttgacggc tttgcagcaa
    14761 aacacaatca ccgcgcgccg attgccgata cggaaatcaa tattgccaat agtgatatca
    14821 gcttagataa cggttttgtg catttaatgg cagaaaaaat caatctggac gacagcaaaa
    14881 tcaatatcac cttcaaccaa gacaacagct tggatgaaag tacccaaatc aaccgcttag
    14941 gactaaacgg caaagtgtcg atgaaaaaca gccatattaa cgtagtgggc gatgaaaaag
    15001 acggtatctc accggctcgc cattatgcca cgatgttctt agtgggggag ctgcttggtg
    15061 aaaagagttc tattttcctc aaatcccacc aaggtgcagt attgagaacc gacagcaatg
    15121 ttacaattgc cggtaaaaac agcaaagacg acctcaaaat taccgccatt accaccggta
    15181 aaaaaatggg caatgaaatc atcggaccgg acggcttgcc aacctcggaa gataacgatg
    15241 ccaacgccag caacaccgcc tttgccatcg gctatgaacc taacgctacg gctatcgtcg
    15301 aaaatgcaag cattaccgca ttagcaccaa acggcggctt ggcatacacc ggcacgtcta
    15361 aaacccaaat tgacgcgaag gataatgcta cctttacctt ctttgaaaaa cctcgagccg
    15421 gctatgacaa attgcttggc gacatcaaag gtaaccccga taaattaacc ccacgcgatt
    15481 tcgcccgttt atacgacaac attaaaggca tcaaagccag cagcctatcc gaacaacagc
    15541 ttggcctagc agacaccgcg aagaaaacca gcgaacacac cttagcaaac agcctagacg
    15601 tagaaaattt ggtttcagtg acagtgtgtg atgagcagaa taagtgtgag gagcgtatgt
    15661 taggtaacaa aaataccaat gctaaagtta ttgtcggaga tatcaaattt gagtagcgtt
    15721 gaagaaagtg gtagaagctc agacttgatc tgataaagca ctataaaaag tgagagtttc
    15781 ccgtttagaa tatgagtgtc aaaattcaat ctaaacaaaa aggaaactct catgttttat
    15841 tacttacaat cccctcatta aacacaagac cggtttatta aatttagcag aagaaccggg
    15901 caatatctct caagcctgca atgtggtggg tatgagccta gatacattct attgctatca
    15961 acaagcggtt atttttggca actaatttgc aaaaaaacaa taaaatccga ccgcttgtag
    16021 agggttaatc cgcccttagt gaaatttcac cgatgccgaa atagcggagg ttgtcgccct
    16081 gttttagaat gagttcgccc tgctcgttaa tgccttgcga aatgccgtgg atttcttcgg
    16141 cttcggtaat gagcttaacc gctttatggc ggaaaaggtc gaaactttgc cagcgttcgg
    16201 cataatgagc gaagccgaca agcggataaa ttttgagatt tttttgcaat tcataggcta
    16261 aacggcaaac caattcgttg cggttgaaat gatattgcga taaatctgcc cacgcttgcg
    16321 tcacaatatt ttcatccact tttgccattc ctaggttcag cccaatgccg ataaccacat
    16381 ctaaaccatt gcgattggct tgggtttcca acaaaatgcc ccccattttt ttgccttggt
    16441 aataaatgtc attcggccat ttaatttgaa tatcttttac attttgaaca gtaaggcttt
    16501 ccgcaatgat caaggctacc actaaactta agggcggtaa atctgccgcc tgctccatcg
    16561 ggtaatgcca taaaatcgag aaatagagat tttcactctc gggcgaatac caagttcgac
    16621 ctcgtctgcc acgtccggca gtttgttttt cagcgaggca aaccgtgccg ttttccaaac
    16681 gttggtgatg agtgagcaaa tattcattgg ttgaatcaat ttcatcgaac acaacggctt
    16741 gcccgcaaat taaagcattt tggatttgag cttggttaag tttcattatt tccccactta
    16801 gcgagtgatt ttttcgctat cgacctcacc gtttttaccg ataaaacgca cttcaggctg
    16861 aatttctacc ccaaattttt ctttcactct ctggcgaacg gttttggcta gagccaagac
    16921 atcttgccct gttgcatttt ctttattaat cagcactaag gcttgctggg tatgtaccgc
    16981 cgctccgcca atttgtaagt ctttcagccc ggtttggtca attaaccaac ctgcggctaa
    17041 ttttaccgtt ccatcagctt gagggtagtg aggaatggct gggaatttgg cttgtattgg
    17101 tgcaaattgt tcgtttgaaa tcaccggatt tttaaaaaag ctgccggcat tgccaaattc
    17161 gtcagggttt ggcaatttgg aggagcgaac cgcacagact tcatcaaaaa tctgtattgg
    17221 cgtaacggtt tccggattga gttgggctaa tgatccgtaa cttagcaccg gtttccacgc
    17281 tttggctaac tttaagccta ccgagataat cgcaaattca tcacggtatt ggtgtttaaa
    17341 cacactttca cgatagccaa attcgcactc ggatttggat agcttaaaga gttctccgga
    17401 acgtaaattt aacacttcca cgaaatcaca tacctgttca aattcaaccc cataagctcc
    17461 tatattttga atgggagcag agctggcgac acccggaatt aacgccagat tttcaatgcc
    17521 ggcaatattg tgtgccaacg tccatttaac caattcgtgc cagttttccc caccttgaac
    17581 gtgcaaatag tggaaatgtt cgtcttcgtg gtgcgtaatc cctttgagtt tatttactaa
    17641 caccacaccg tcaaaatcct ctaaaaacaa aacgttagag ccttgcccga gaatcaagat
    17701 tggcagttga gcgttaaagg ctttttgcca ttcgctcaat agctgttcga ctgtggtaaa
    17761 ttcaataatt tgggtcgctt ttgcaggcaa atggaaagtg tgaaaagggg ttaagctatg
    17821 tttcatcatc aaattagtta gttaagaagt ggaaataaca agcggtgata tttttacaaa
    17881 attttgcaat taagattttg ggcaggcaca ggatctgccc ctacattcag aattaccttg
    17941 ccccatatac cacaatggtt ttgccgtgag cagaaattaa gccttcgtct tccaacattt
    18001 ttataatgcg tccaacggtt tcacgggaac aaccgaccat ttgcccgatt tcttggcggg
    18061 taattttgat ctgcatacct tccgggtgag tcattgcatc cggcatttta gctaagttga
    18121 gcaaggtttg agcaatgcga ccggcaacgt ctaaaaaggc aagattaccg acttggcgtg
    18181 aagtttgacg taaacggcga gccatttgtg ccgataaata cattaaaata tcggggttta
    18241 aatggactag ttgtttgaat tttttatagg aaatttccgc aatttcacaa ggacctttag
    18301 tgcggacgta agcggtacgt tgttggactt tttcttcaaa taaacttaat tcaccgacaa
    18361 actcacctgt gcctaagtta gttaagagca tctctttggt ttcatcatct ttgatgtaaa
    18421 ccgacactga gccattcacg atgtagaaaa gtgattctgc atcttcaccg gcgtgaatga
    18481 gtgtatattt cgccggataa cgatggatat gacaatgggt taaaaaccac tccaccgcag
    18541 ggtcgtgaat agagggcgga ggagttacat tttccagagg agctgttgaa agtgtcatat
    18601 cttgcatagt atttcctata actcttatac taggttaaat ttttagaatt ttaacacgaa
    18661 attaaaggtt agcctaaaaa agattttttg tctttaatat caaggctttc gtgtaattcc
    18721 gaccaaacaa tcaccacttt atctgcctta agttgtgtga gtaatcgttc tcttttttct
    18781 gccagagaaa gttccctttc cccgtagtct gtgccttctc gtaaaatgaa ggaatctaaa
    18841 atattatgta aggttgattc ttcgagttct tgccaaggta taatcataat taatcaaata
    18901 aaggcttaat aaatgcccac tgtttttcaa aatgttggtg ttggttatag ctgaaattag
    18961 aacgaaccaa gcgtaaaaat tgcccttcgc agaaattcac taaataaccg gctaaggctc
    19021 tttcgtcttc aaagctcttg cgttcacgca gtttactaag ttgcaaaata ttggcaaatt
    19081 gtaactccaa gttatcaaag aattttgcca ctcgagcttt gagcaactcc tcttcaaaca
    19141 tcaaggcgtg tccggtcagg atgcgggtaa cgcccgggtt tttgcgagca aattctaaaa
    19201 tcacatataa aattgctcgc accgaattgg cactgctgtc ttggcgttta ttggcgtgaa
    19261 tatagctggt gagggtctgc tcgattttct cgattaacgc ttcaaacatc ttggttttac
    19321 ttgggaaata gcgatacaac gccccctccg acacccccac cgcagcggct aaacgctcgg
    19381 tagtgatacg ctgcattccc tcttcagaat ttaacaagct gattaacact tccaacactt
    19441 gttggcggcg ttccaccact gattttttcg gcattttaat tttaggttct gtcattgcca
    19501 atcctattat tgcttacctg aatgcccaaa accgccttcg ccacggtcgg tctgctcaaa
    19561 ctcttgcaca atgttaaaac ttgcctgaac caccggcaca aagactaact gagcaatacg
    19621 gtcgcccacg ttcacggtaa aatcagcttg gctacggttc caaagcgaca ctttcagctc
    19681 gccttggtaa tcgctatcga tcaagccgac taagttgcct agcacgatcc cgtttttatg
    19741 ccctaaacct gatcttggta agatcaccgc tgccaaattc ggatcggcga tataaattga
    19801 aatccccgtt gggatcaaca ccgtttcacc cgcttttacc gtcagcggct cgttgagcat
    19861 cgcccgtaga tccaagcctg ccgagccttc ggtcgcatac gcaggtaatg gaaattcatt
    19921 gccgatacgg ctatctaaaa tttttaaatc aatttgtttc attctttttc ctttttgtaa
    19981 atttttaaaa ctatattatt cagttataaa aggttttaat tgtatcgttc caagtggaag
    20041 ttcagtcaat atttcccagc ttgtgttgtg gtaaaatcga aataaacttg caacgttttc
    20101 aacgtagctt gaattaaatt taccttctaa tggctttatt cctccagtaa aatgaattat
    20161 atgtggaata taatttggcg aaattttttg ctgggcaata tcatctaata aatgttctgt
    20221 c
//
LOCUS       DANMBQ010000027        19918 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.027, whole genome shotgun sequence.
ACCESSION   DANMBQ010000027 DANMBQ010000000
VERSION     DANMBQ010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19918
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.027"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..1081)
                     /locus_tag="PXE92_000897"
     CDS             complement(<1..1081)
                     /locus_tag="PXE92_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5760162.1"
                     /translation="MGIMSKSISIFNHKGGIAKTTTAFNVGWSLANQGYQVLLVDLDS
                     QCNLTGLVLGYDQCKEDSDLALFYNNRHHLTMEGIVEALINGQSPDNYLSGNVGQITQ
                     TLNPNLFLLPGHLNVSELDSQISVSLKIAAGVPATRNIPGNLPTLIKKVAEQNNIDYI
                     LYDLSPNVGGLNEVILMSSDYFIVPTSPDFFCWQAVGSLAKNIRKWHNELKAFKELNG
                     FNQSSYAIKNKPQFLGTIQQRYRPRKGQPAKSFEKWIERIRNEVITNFVPVLKTIDCA
                     IDDTAIYAALKSTNSDLEPFDLAHIADFNSLIAISQELRVPVFSLTKEQIKNSGQFGH
                     ALNTMDESKENFDQEFQSLAERIIQL"
     gene            complement(1146..1577)
                     /locus_tag="PXE92_000898"
     CDS             complement(1146..1577)
                     /locus_tag="PXE92_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760163.1"
                     /translation="MKKMAIVALSAFFSMNAFANNNVVYSCTTTDNQTLKVTKEGGNY
                     VYSHGNTTFKNPVKEALKNPASEIAGGSQFTTISLELRNAGKSYIVGHIEADPKSPFE
                     ASVQIQDIKTGNDITSFECRSDKPIRHNFDRKLMRKSGFAA"
     gene            complement(1581..3683)
                     /locus_tag="PXE92_000899"
     CDS             complement(1581..3683)
                     /locus_tag="PXE92_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL5760164.1"
                     /translation="MKKAKSLKFLTACIMLTTMSGYANSNTVNVGNSISNFIENTTGY
                     RTGNLGVSGNNALTEYYPVLSDYMHYSIGGGSAISAPASRGRPNQYGIGIGWKSNLTC
                     GNFDIKLSIKNQLNGITEGFKDLYGNIIESATGAVASLPAMIIQRANPQLYDILSNGL
                     YQGKLDFNNFKTSCEAMSNQLADLAMDSKLAKMAGLHRAAEIAETEPDAMAAKKKMDK
                     KDAEKGIPWVGGEQRGGKNQKPMAIVADIVGAGYNLALGRGPLEKGDIPIASCDGMLC
                     TEWKNPSEAAAYASEVIGETFLDACETCEQSSSGAKAGKGIAHFIEQTTIEKATKLEA
                     ALNHLDSLTPEQLNSLSTSTVSVTKGVLEAIAASPDAALLGARLSQELAISKEMEKLL
                     LIRRAMLAGMREPNVIKSSLVEEAERNLKLLDREIEQVKLEMELQRSINGNTALAAIT
                     QQMNEQALAIDDNAMGDGNRRFANLSNQAGANNLNTSGIANSAQNAVGDRYIAIPKSD
                     GSGMSDFYGAYKASPTNIVSNVNVGSYTQIAQMNGNANEQATALIKQFEGYLSHGKWD
                     VNANRAGYGSDTYTTADGMVHRVQKGTYVSREDAERDLARRMPQFMNVARGNVGADVW
                     AKLTPQAQAALTSVSYNYGSLSKLESVQKAAAVSAQSGDMTALANSIRNLQGHNNGVN
                     ARRRNQEADYIINAPKGN"
     gene            complement(3710..3988)
                     /locus_tag="PXE92_000900"
     CDS             complement(3710..3988)
                     /locus_tag="PXE92_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HDL5760165.1"
                     /translation="MQAKTFYYLPLLLLSAMASASPANKPSDVTVKVFTSESYPKVFP
                     HSGDWATHSDSFSNTENYSWALWRPYSCCKKQGQVFLGHVDWKSTHTH"
     gene            4958..5389
                     /locus_tag="PXE92_000901"
     CDS             4958..5389
                     /locus_tag="PXE92_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL5760166.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLNDIRLVEHKKGNPFYACRVAAL
                     VGESDSPEYRYFDMNVVGKETETLIKKCQKAVSEEKKVLVSFVMADLWFDTFTYSSDS
                     KYHKKGDTGVSLKGRLIRIKMIKIDGEIVYQEKPKADEQSE"
     gene            5495..6175
                     /locus_tag="PXE92_000902"
     CDS             5495..6175
                     /locus_tag="PXE92_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760167.1"
                     /translation="MNSLQQFVKTLSPTVLNGRHFDGIVGDVVFVQNGYGKWLDQGFT
                     IIGFDKSIEEKDWIYLDWDCYWFGKNPAQVIPEKSWAQRSWLARAYSISLERFNSLGL
                     EREYNIVSDWDNPIYGTDIQLIEHSKEFFRWTEADDRGIFLVHNEMAFHFFKKEIKAS
                     SEPEYYQPIETFWKDATVVLNIEDLDMLERVGLEQTNTPALAKLTTFVQAARNEISNG
                     NIVFYRAF"
     gene            6201..6608
                     /locus_tag="PXE92_000903"
     CDS             6201..6608
                     /locus_tag="PXE92_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL5760168.1"
                     /translation="MNRQGIYINGKQVFDSKGKEINSVQIINSTVQTVVGINKGYISM
                     AAGNNVLIVDGQTIALEPSPTINIEVFGNVTNLNAGSENVRVTGDAKSVSTVSGDVTV
                     DGNVTSNVKTVSADIHCKSILGKINTVSGDIYR"
     gene            6688..7050
                     /locus_tag="PXE92_000904"
     CDS             6688..7050
                     /locus_tag="PXE92_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760169.1"
                     /translation="MEDSFFDFDDISCYLGQWEAILEEYSDIVSIEDFWLVAKEFETV
                     PHFGNLYQELVISRLIQRFCTELDIEQDSDLVEFDYYINAIDTHFYINRQRICDIDDW
                     NEMLDKIRKEMTPAKLAA"
     gene            7163..7423
                     /locus_tag="PXE92_000905"
     CDS             7163..7423
                     /locus_tag="PXE92_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760170.1"
                     /translation="MTFELGRVCTTRAVAECFNQNALVELLNRYCYGDWGNLCEEDKL
                     ANQEAMKYGGRIVARYDVDDESLYIITEADRSCTTILFSYEY"
     gene            7582..8211
                     /locus_tag="PXE92_000906"
     CDS             7582..8211
                     /locus_tag="PXE92_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760171.1"
                     /translation="MKTKISLMTVFMLGLSGCVHQQDTAQNSDEITPMPDSLLTPQMQ
                     QLPPQDRIVSKDIYQEQTTSNTEVVRDGRYTLISIAPEEGQKYLLEQVVSVKVSNPKN
                     RFTANVQQGLRSTLTNTGLDLCYPPIGEQGNAVQTLFTRPLPKVHYQFGPMKLYEALQ
                     MIAGPAYELTLNDISRTICFKARESSFQNPHKPAVAVTTTTIKTEVIEE"
     gene            8211..8984
                     /locus_tag="PXE92_000907"
     CDS             8211..8984
                     /locus_tag="PXE92_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03759 family integrating conjugative element
                     protein"
                     /protein_id="HDL5760172.1"
                     /translation="MREISMKFNLCRKAIPLAVLPLLLSFALPTLAQNMQTETVSSSQ
                     STLQKQSQHQQSQLSDSLKQAKEWGLTVEEWSRYTELMKGERGMWSPNLDPLTALGIE
                     ARTAEEREKYARMLAKKYYERVSKELDFDKVYRQEFEKLYPNELPFEVEPHISQSVGR
                     VVYFTRFDNCDSCKSDLGKILSYANNQTPLDIYIVGQNISDNDIRKWAADNNIDPIKV
                     SKRLITLNHDKGYWLRYSLGKMPAAYQIKQDGEWTSLVY"
     gene            8963..9733
                     /locus_tag="PXE92_000908"
     CDS             8963..9733
                     /locus_tag="PXE92_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HDL5760173.1"
                     /translation="MDITRVLVIVAVFLSNISISQAKPFNGFGSEIDSYIRMAAQRYQ
                     VSEAMLRGFVKMEDGWYGNISPTGATGVGQFTMGTWNWLSETERGKQLGMKLITAKNR
                     GSYADPRRDKYTNTLATALLARWHIEQFQLRNIPITDENLYMAHNIGLDGLHRAMMGK
                     ATKEDILNMRRNGMKSWMTVRDFLNYQKGRFLAHKQEANFMTVSKQGHIHTGVAAFVY
                     PTSQMGKSVKWVEPDNKMIWVEPKNAMVWVEPQNTLQR"
     gene            9736..10242
                     /locus_tag="PXE92_000909"
     CDS             9736..10242
                     /locus_tag="PXE92_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL5760174.1"
                     /translation="MQNKVKVLLFSLYVSHFSWADLTVIADFGGESAVRFYESLQPEH
                     DENAPNYPNSISASVSEADILPIVSHKLSPGTIKEKPFDLTGMQAIFLIGADNTSAQW
                     LQQNREKLITLNATGLVVNVQTLSELNQLRDIVPELRILPTPGDDLAERIGIAHYPVL
                     ITESGVSQ"
     gene            10242..12443
                     /gene="traD"
                     /locus_tag="PXE92_000910"
     CDS             10242..12443
                     /gene="traD"
                     /locus_tag="PXE92_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
                     /protein_id="HDL5760175.1"
                     /translation="MSAKHTLEAWLRPPVEFFPAAVHASCAFVSAAAPWSLALHPSIG
                     YSIAAGFGALSFYRAKQGWQIVRYHRNLKRLPNYSMTSKQIPVSNKYLFVGKGFEWKP
                     IHTQRLHDCFSDNGSKYLEPSKLFKMAREYEKRHENWLTHLTSKDSRWNLVRPLPPVE
                     GIPAIHGIEPDEVDVVQSVSSRVGHTVVFGTTRVGKTRLAEVFVTQDIHRGKTADERE
                     VVVFFDPKGDADMLKRMYAEAKRAGREDEFYVFHLGYPEISARYNPVGRFNRISEVAG
                     RISGQLSGAGNSAAFKEFAWRFVNIVARALVELGNRPNYVQISQFVQNIDSLFLDYAE
                     KFIRKTDPKIWENLATIAAGLDEKALPFGMKDRPLIFVINKYIAESAVFDPILQGLAS
                     AVRYDRTYFDKIVASLLPLLEKLTTGKISELLSPDYADILDERPIFDWESIIRKRGIV
                     YIGLDALSDATVAAAVGNSMFADLVSMAGHLYKFGTNDGLPGAFKEKSKPVKINLHCD
                     EFNELMGDEFIPLINKGGGAGIQVTAYTQTLSDIEARIGSKPKAGQTLGNFNTLYMLR
                     VKEPATAELLTKQLHEVTIKRSTVTSSTTDSSNPDDDKAFSSNTGQRISESTVPMLVP
                     ANITNLPKGQAFALMDGSKLWKIRMPLPAVDKDDMMHQSLRELTDYMRKNYHVVENWW
                     QPAFTEYTPSRDIAEAFEAMSEPQYKTQIDHQVDNFGIDEPYDIDEEENDE"
     gene            12436..12789
                     /locus_tag="PXE92_000911"
     CDS             12436..12789
                     /locus_tag="PXE92_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5760176.1"
                     /translation="MSSAKMREEKRTNLLDLPNKYRNFNGEFSASCGLDNAEELLIHS
                     QSYFIEWFEQGYSFHQFAEKFADQGLSLWSADEVSMRHSDKSKDIFAFYLAFDNNPSG
                     YILVQCQLDREDSLQ"
     gene            12786..13481
                     /locus_tag="PXE92_000912"
     CDS             12786..13481
                     /locus_tag="PXE92_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03747 family integrating conjugative element
                     membrane protein"
                     /protein_id="HDL5760177.1"
                     /translation="MSEETKARRKSGLINLIFGKINMSLAAIAVSLIFSIILEWIGIA
                     FWWPQEGHLHSQTMMLNEMQWLSDDFSQSLFAKSSTAFATSIIENVYNWLFVYTGVKE
                     WLTSPGNGSMEQWVHHYGRAYIESVIYVVITFIIRLIIIVFTSPLFLLTALSGLTEGL
                     SLRDIRKFGAGRESAYLYHHARRYIMPMMVTAWVLYLSIPFSIHPNIILVPAACLFGL
                     SICITAASFKKFL"
     gene            complement(13513..13896)
                     /locus_tag="PXE92_000913"
     CDS             complement(13513..13896)
                     /locus_tag="PXE92_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760178.1"
                     /translation="MRYQMRYLALFLVVFPYVAHSLPSAQKVGNICHAENAQYNYGGL
                     WELSLRGKLICNYWQFLGDDERKKIELQLDEYGEFPIWNTSEQISEQIIEDDEYPQYW
                     EVEDWEDSDWDTESENEDTEATTEE"
     gene            14083..14409
                     /locus_tag="PXE92_000914"
     CDS             14083..14409
                     /locus_tag="PXE92_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RAQPRD family integrative conjugative element
                     protein"
                     /protein_id="HDL5760179.1"
                     /translation="MSISTSLRKGIVVLVTLSCLPALASTEQEQLAQAIKQLEAAKLS
                     LQRAEKVAKASPKTREYFNYSAIHSDIETVKKGIQQYINPSRALPRDPNVLRTLSDDY
                     SKLRGQ"
     gene            14409..14642
                     /locus_tag="PXE92_000915"
     CDS             14409..14642
                     /locus_tag="PXE92_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03758 family integrating conjugative element
                     protein"
                     /protein_id="HDL5760180.1"
                     /translation="MSYSPANAFSVASGIDPFRLKIMIAIIFLSLLLLAVAWALNSGY
                     KGFSFRDKSPFSLLVLFLKGVALLACVTYFFIY"
     gene            14657..15046
                     /locus_tag="PXE92_000916"
     CDS             14657..15046
                     /locus_tag="PXE92_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2976 domain-containing protein"
                     /protein_id="HDL5760181.1"
                     /translation="MNRIKSLTKHLHSRYLAVMLFFWGSLQNAFAAGPDASKIPDFQI
                     PGVDSNTKDPMEIIWIVLKGLVTLGAVILAAVAILTVVKALIGIYNEATSENGKKGWG
                     HFILALIIGFIVIFFCLWLVKLAVGLF"
     gene            15069..15434
                     /locus_tag="PXE92_000917"
     CDS             15069..15434
                     /locus_tag="PXE92_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03750 family conjugal transfer protein"
                     /protein_id="HDL5760182.1"
                     /translation="MSEQDTTIPFLPTRLNREATVYGGMTVSEFGISAGLGFMLGLIV
                     GLFLWILTDFWLLIPAMAMLLCIATVLIGKGIVAAVKRGKPEAYLNRLVEKKMDDLFN
                     GHKFIKREGFWSIRRYRRK"
     gene            15438..16082
                     /locus_tag="PXE92_000918"
     CDS             15438..16082
                     /locus_tag="PXE92_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03746 family integrating conjugative element
                     protein"
                     /protein_id="HDL5760183.1"
                     /translation="MSQLKSQLHEKDKHIKTTRIFAFLFFIIILVLAGVIYTFPSRLT
                     IYNPPDLRAGSQRAWWEIPKPTIYAFSYQIFQQMNRWMTNGEEDYEKNITTLKPFLTP
                     HCEAFLRQDYKDRLRNNELRSRTRMVYEITGRGYSEDKVTIFSEDSWAVNLDLSVDEH
                     FQGQPVKRVYIRFPISIVRMDVDSAQNPWGLGFNCYHSIPKLLEGVEPKTEEKK"
     gene            16082..16966
                     /locus_tag="PXE92_000919"
     CDS             16082..16966
                     /locus_tag="PXE92_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03749 family integrating conjugative element
                     protein"
                     /protein_id="HDL5760184.1"
                     /translation="MKRLPILLVSLLIGFSGSSLADVLMKWERKPLPVALQVEKERII
                     FVDKNVKVGYPAELDGKLRIQSTGGAVYLKALETFPSTRIEFRDVTTGEIFLFDLTAA
                     SKVANPEEAIRVVFDGTVEKQSFSSNRDDESSDLPIANSRPQLPVPAALTRYAAQSLY
                     APLRTVEPLDGVRRVAHRLPKKITKLLPAYSIEATPLISWQLDEYVVTAIRLQNKGNT
                     QITLDPRELQGQFYAATFQHNWLGGYGENEDTTTLYLVTEGYANNALIPETRPVKLVS
                     KKVKRTTKVETKPAQSAK"
     gene            16978..18432
                     /locus_tag="PXE92_000920"
     CDS             16978..18432
                     /locus_tag="PXE92_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL5760185.1"
                     /translation="MKANKALFVILGIVFILVGGIVYALFGRSESVPQPTQQEILDIS
                     IKDLTPEQVRTMGIQGDTPIDTLRTLVTTVKSNERRMDELIDENRQLKQKEDLVNGRI
                     NDAVNNETRKLQEQIADLKMQLFDMATLVNNKPTTQESTPQVEAQPNTVPNKGFGTAG
                     DKLPIGGATMSNVDTSGMYWVEPSDQISLDASGKPVSGNTVATKFGFPKDFNGGQSAG
                     NNEKKGLPFFPETDTVTSSQGTAGNARGKNQMTSVYTIPSNSTFLDSVAMTGLIGRIP
                     IDNRVSDAYPFKVLIGRENLIANGIELPDVDGAIVSGTATGDWTLSCVRGSVKSMTFV
                     FNDGRIVSTSNKGNGEEIGWLSDSSGIPCVPGERKTNAPEYLGTNFFLAAASAAAQGF
                     SQSQTTTVVDGSSVVGAVTGDQGKFILGQAIGGGLKESADWFRKRFAENFDAVYVPPG
                     HRVSIHIEKEIEIDYNAQGRKVKYGSKSTNSQLD"
     gene            18445..18843
                     /locus_tag="PXE92_000921"
     CDS             18445..18843
                     /locus_tag="PXE92_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03751 family conjugal transfer lipoprotein"
                     /protein_id="HDL5760186.1"
                     /translation="MKHLFCIMISALLITGCTTSTEELLPTNGSTMRDIWDKGASNND
                     LHLYRSQQGRTLDPVDYIPNSEQRAYTRTAENEINNLFPRLPNPDLIMYVYPHQTRSG
                     EPLSIPGYSTVLPFYGRVQYAQPGDRTRGL"
     gene            18843..>19918
                     /locus_tag="PXE92_000922"
     CDS             18843..>19918
                     /locus_tag="PXE92_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraC family protein"
                     /protein_id="HDL5760187.1"
                     /translation="MMSFLSEVFSSFKPTKAGVISSEPNENTGESDIIQNKMSEVNNE
                     VQQLKRSGKLTQSQHHRRLYSQEPSFIDHLPWGEYLNEHGVILLDDARSVGAVFDIKP
                     IGTAGRSIEFLSRIRNLVKDALQDSFDELDINPYVVQFYCQDSDDLQPYIEQLRNYIS
                     PIAQNSAFSEEWLRVQAKHFKDIGKPEGLFIDDRVTNTAWSGRIRSTKMVIYRYVDKS
                     NDSNENLIIEQLNNACSRINGALTTAGLQLQRLDGEQIRQWLLRWFNPNPSINFEGLS
                     NNDCYHLFGKQTSNDGLPELAFNDFSEDLFYSQPKNEGNYWYFDDQPHEVVVVNNLRK
                     QPEVGLMTGEITRGRNINALFDLLP"
BASE COUNT         5984 a         3820 c         4040 g         6074 t
ORIGIN      
        1 tcagttgtat aattcgttct gctaatgatt gaaattcttg gtcaaaattt tctttacttt
       61 catccattgt attcaaagca tgtccaaatt gacctgagtt tttaatttgc tcttttgtta
      121 aggaaaatac gggaactcgt agctcttggc taatagcaat caacgaatta aagtcggcta
      181 tgtgagccaa atcaaatggc tctaagtcag aattcgttga tttaagagca gcataaatag
      241 ctgtatcatc aatagcacaa tcaatagttt ttaataccgg cacaaaattc gtaatgactt
      301 catttctaat tcgctcaatc catttttcaa atgatttggc cggttgccct tttcttggtc
      361 gataacgttg ctgaatagta cctaaaaatt gtggcttatt tttaattgca taagatgatt
      421 ggttaaaacc attaagttct ttaaatgctt ttaactcatt atgccatttg cgaatatttt
      481 tagcgagcga accaactgct tgccagcaga aaaaatcagg tgatgtaggt acaataaagt
      541 aatcactaga cattaggata acttcattta atccacccac atttggacta agatcataga
      601 gtatgtaatc aatattgttt tgttcagcta ctttcttaat taaagtcgga agattgccgg
      661 gtatatttct tgttgctgga acaccggcag caatttttaa tgatacacta atttgcgaat
      721 caagctcgga aacattaagg tgaccaggta acaagaacag atttggattc agggtttgag
      781 tgatttggcc aacatttcca ctaaggtagt tatcagggct ttgtccgttt atcagtgctt
      841 caacaatacc ttccatagtc aaatgatgtc tattattgta aaaaagcgct aaatcactat
      901 cttctttgca ttgatcgtag ccaagtacca gaccggttag gttacattgt gaatccaaat
      961 cgactaacaa tacttgatag ccttgatttg ctaaactcca accaacatta aatgcagttg
     1021 tagttttagc aatacctcct ttatgattaa aaatactgat agacttactc ataataccca
     1081 taattctatg aaataattaa cccaccgaac tcatttgaga atggtgggtt aatgctttgc
     1141 tttagctagg ctgcaaatcc agattttctc atcagtttgc gatcaaagtt gtggcgaata
     1201 ggcttatcgg aacgacattc aaatgatgta atatcatttc ctgttttaat atcctgaatc
     1261 tgaacacttg cttcaaaagg tgatttaggg tctgcttcta tatgacctac aatataagat
     1321 tttcctgcat ttcttaattc gagcgagatt gttgtgaatt gtgaaccacc tgcaatctcc
     1381 gatgccggat ttttgagagc ttcttttaca ggatttttga atgtggtatt accgtgagag
     1441 tacacatagt ttcccccctc tttggtaact tttaacgttt ggttatctgt agttgtgcaa
     1501 gaatacacta cattgttatt tgcaaaagca ttcattgaga aaaatgctga taaagctaca
     1561 attgccattt ttttcatagg ttagtttcct tttggtgcgt tgataatgta atcggcttcc
     1621 tggttacgtc ttcgagcatt aacaccatta ttatgccctt gtaaatttcg gattgagtta
     1681 gctaaagccg tcatatcacc tgattgtgcg gagacggcag ccgctttttg aacactttct
     1741 agtttagata atgacccata gttgtatgat accgacgtta atgctgcttg tgcttgagga
     1801 gtcaatttag cccaaacgtc ggcaccaaca ttaccccttg caacattcat aaattgaggc
     1861 attcttcgtg ctaaatcacg ttcagcatct tcccggctta cataagtgcc tttttgaacc
     1921 cgatgaacca taccatctgc agtagtatag gtgtcagagc catatccggc acggttagca
     1981 tttacatccc atttcccgtg gcttaaatat ccttcaaact gtttgataag agccgttgct
     2041 tgttcattcg cattgccgtt catttgggca atttgggtat agctccctac attcacgtta
     2101 ctgacaatgt ttgttgggga ggctttatat gctccataaa aatcactcat gcctgagccg
     2161 tctgatttgg ggatagcaat atatctatcg ccaacggcat tttgtgcaga attagcaatg
     2221 ccactggtgt tgagattatt tgctccggct tgattgctta aattggcaaa gcgacggttt
     2281 ccatcaccca tcgcattatc atcaatagca agagcttgtt cgttcatctg ttgagtaatt
     2341 gcagctaatg ctgtattacc gttgattgaa cgttgcagtt ccatttcgag tttaacttgc
     2401 tcaatttctc tgtcaagtaa tttgaggttt ctttctgctt cttctactaa ggaagatttt
     2461 ataacatttg gctcacgcat accggctaac attgctcggc gaatcagtag caatttttcc
     2521 atttctttag aaatagctaa ttcttgcgat aaccttgcac ccagcaaggc tgcatccggc
     2581 gaagcagcaa tggcttctaa tacgcctttt gttacactga ccgttgatgt actcagtgaa
     2641 ttgagttgtt ccggcgttaa actatctaag tgattcagtg ccgcttctag ctttgtggct
     2701 ttttcaatag ttgtttgttc aataaaatgg gcgattcctt tcccggcttt agctccactt
     2761 gaactttgtt cacaagtttc acaggcatca aggaatgttt caccaatcac ttcacttgca
     2821 taggcagcag cctcgcttgg atttttccat tccgtacaaa gcataccatc acagcttgca
     2881 ataggtatat ctcctttttc taatggtcct cgtcctaaag cgaggttata tccggctcca
     2941 acaatgtcag caacgatagc cattggtttt tgatttttac caccacgttg ttcgccacct
     3001 acccaaggga tgcctttttc agcatctttt ttatccattt tcttcttggc tgccattgca
     3061 tcaggctctg tttcagcaat ttcagcggct cggtgtaatc cggccatctt tgctaattta
     3121 ctgtccattg ctaaatcagc aagttggtta gacatggctt cgcaactggt tttgaagttg
     3181 ttgaagtcaa gttttccttg atatagacca ttagaaagaa tgtcatacag ttgaggattt
     3241 gctcgttgga taatcatcgc cgggaggctg gcaactgcac cggttgctga ctcaataata
     3301 ttgccataaa gatctttaaa accttcagta ataccattaa gctggttttt aatggaaagt
     3361 ttaatatcaa agttgccaca agttaaattc gatttccagc caatgccaat cccatattga
     3421 tttggtctgc cacgggaagc tggtgcggaa atggcactac ctcctccaat ggagtagtgc
     3481 atataatcag aaaggacagg gtagtattcc gtgagagcgt tattaccaga aacgcctaga
     3541 ttaccagtcc tatagcctgt tgtattttca ataaaattac taatgctatt gccaacatta
     3601 acggtattac tatttgcgta tccgctcatg gttgtgagca ttatacaagc ggttagaaat
     3661 ttgagacttt ttgctttttt catttattta tcctaatagt gctgataatt taatgagtat
     3721 gtgtactttt ccagtccaca tgacctaaaa aaacttgccc ttgtttttta cagcaagaat
     3781 agggcctcca taatgcccag ctgtaattct cagtattgga gaaactatct gaatgggtag
     3841 cccaatcacc actgtgcgga aagactttag ggtaggattc ggaagtaaat accttaactg
     3901 ttacatctga gggtttatta gcaggactag cacttgccat agctgaaagc agtagtagtg
     3961 gtaaatagta aaatgtctta gcttgcataa atgctccaca aatagagtaa ttcacgttta
     4021 ccttaaaaga tgatttggtt agaagaaatc ggaaattgtt ttttggtttt ggagagtttt
     4081 tgttagtata taagttaatg taacaaggga gagtggatgt atgagcaata gaatacctaa
     4141 agcctgttat gcttacccaa aatcgccgaa caacccgttt aatagattgt cggttatcaa
     4201 tctataccag ccgaaatgtc tcccagcatt ctgaaaggga actctgtaaa attacaggaa
     4261 tgccacctaa acaataaatg gataatgcca gccactttat ccgttgtatt ttgtcacatg
     4321 cgtgattgca atgtcataat attacccgac ttggggatat tatgacattg caatcattgc
     4381 tcacttttct tagcctgagc ccacaggtga ataaagggtg ccgtttgtgt cctcgatgat
     4441 gccacagata tgccgattaa agaccacaag gtaatcgggt aaattacgaa cgaaaatatc
     4501 aacattgtca cgaaggtgct gctattttca atatagtaac ttatattggt ctaacttaaa
     4561 tttcatttat tcttcaaaag tacaacaccg ttggtaagtg atttatcaac ggtgttgtca
     4621 tttccaattc tctaaaatca aaattcaatt ctcaattaac tttatgattc aatatggcta
     4681 aattatcctc aatttaagac gctgtatata acagcactta ataagtcgca taactcctga
     4741 gaagcgacgg ctatccttag aggtagttga gttattgcca aaatgtctcc cagcattctg
     4801 aaagggaact ctgtaaattt gcaggaatgc caactcaatc cctatcattt cagtgaatat
     4861 tcattgagat tccattttac ttccaccttg cggggaacat ttttcccgtg ttgggtaagg
     4921 atgtttctcc gcttttttac atttggagaa acaaactatg acaactcaaa cttctactca
     4981 aaaaaattac ttcaatctac atactaccgg cattggctat ttaaacgata ttcgtttagt
     5041 agagcataaa aaaggaaatc ctttttatgc ttgtcgtgtt gcagctcttg ttggcgaatc
     5101 tgactcacca gagtacagat attttgatat gaatgtagtc ggtaaagaaa ccgaaacact
     5161 catcaaaaaa tgccaaaaag cggtctctga agagaaaaaa gtgcttgtat catttgtaat
     5221 ggctgatttg tggttcgata ctttcactta ttcaagtgac agtaaatatc acaaaaaagg
     5281 cgatactgga gtgtctctta aaggtcgctt aatccgcatc aaaatgatta aaattgatgg
     5341 ggaaatcgtc tatcaagaaa aaccaaaagc agatgagcaa tctgagtaat tttacccaag
     5401 cccgacaatt tatgttgggc tttactttat gtcccgtagg gaaacactcc ctgcggtgtg
     5461 ttttccttta ttttacaatt ttaggagaaa cacgatgaac tcacttcaac aatttgtcaa
     5521 aacattatca ccaacagtcc ttaatggtcg ccattttgat ggtattgttg gcgatgttgt
     5581 ctttgttcag aacggctatg gtaaatggct tgatcaaggc tttactatta ttggttttga
     5641 caaaagcata gaggaaaagg attggattta cctagattgg gattgctatt ggttcggaaa
     5701 aaatccggca caggtaatcc ctgaaaaatc ttgggctcaa cgttcttggc ttgctagagc
     5761 gtattcaatc tctcttgaac gttttaattc gttaggctta gagcgtgaat ataacattgt
     5821 gtctgattgg gataacccca tttatggtac agatattcag ttaattgaac attccaagga
     5881 gtttttccgt tggactgaag ccgatgatag agggattttc ttagttcaca acgagatggc
     5941 ttttcatttc ttcaaaaaag aaattaaagc ctcatcggaa ccggaatact atcaacctat
     6001 tgagacattc tggaaagatg ctacggtggt attgaacata gaagatctag atatgttaga
     6061 gcgagtagga ttagagcaaa ctaatacacc tgctttagca aaattaacta cgtttgtaca
     6121 ggctgctcgc aacgaaattt ccaatggtaa tatcgtattc tatcgagcat tttaacatct
     6181 aatacaaaga ggattattat atgaatcgac aaggtattta tatcaacggt aaacaagtct
     6241 ttgactctaa aggcaaagag atcaacagcg ttcaaatcat taatagtaca gtgcaaacag
     6301 ttgttgggat aaataaaggt tatatctcaa tggctgccgg caataatgta ttaattgttg
     6361 atggacaaac aattgcatta gaaccctctc cgactatcaa cattgaagta tttggcaatg
     6421 taaccaacct caatgcaggt tcagaaaatg ttcgtgtaac aggcgatgcc aaatctgttt
     6481 caactgtcag tggtgatgtc acagtggatg gtaatgtaac ctcgaatgtg aaaactgtga
     6541 gtgctgacat tcattgtaaa tctattttag gtaaaattaa cacagtgagc ggtgatattt
     6601 atcgctaata ttgactatac accctatcgg gaaacattct cggtaggtat gtttccccac
     6661 tttttattta aaacttggag aaacataatg gaagattcct tttttgactt tgatgatatc
     6721 tcttgctatt taggacaatg ggaagccatc ttagaagaat atagcgatat tgtcagtatt
     6781 gaagactttt ggcttgttgc caaagaattt gaaactgtac cacatttcgg taatctgtat
     6841 caggagcttg tcatctctcg cttaattcaa cgattctgta ctgaattaga tattgagcaa
     6901 gattcagatt tagttgaatt tgactactat atcaatgcaa tagacacgca tttttacatt
     6961 aatcgccaaa gaatctgtga tatagatgat tggaatgaaa tgttagacaa gattcgtaaa
     7021 gaaatgacgc cggctaaatt agctgcctaa ttttttgcaa atttttacta aaaacgactc
     7081 ttgccgcagt cttagtccac ccacttgggg aaatactccc ctaatgggtg acatttcccc
     7141 gtattttatt taggagaaat gtatgacgtt tgaacttggt cgagtatgta caactcgtgc
     7201 tgttgctgaa tgtttcaatc aaaatgcctt ggttgaattg cttaatcgtt actgttatgg
     7261 tgattggggc aatttgtgtg aggaagataa attagcgaat caggaagcaa tgaaatacgg
     7321 agggagaatt gtagctcgct acgatgtaga tgatgaaagt ctttatatca tcacagaagc
     7381 tgatcgtagc tgtacaacaa tcttattttc ttatgaatac taaggagaaa tccgattaac
     7441 acagcacatt attgtgtttt caaacgccgt ctaatgatgg cgttttttta ttctctcaat
     7501 caacaacaga ataaatcatt caaaatcagc aatgacttcg ccatagttgg tctagattcc
     7561 tttcatactt ggagagatta aatgaaaaca aaaatatcct taatgactgt ttttatgctt
     7621 ggcttaagtg gttgtgttca tcaacaggat acagctcaaa atagtgatga aatcacacct
     7681 atgcctgatt cattgctaac acctcaaatg caacaattac ctccacaaga ccgtatcgtg
     7741 tccaaagata tttaccaaga acagactacc tcgaataccg aagtggtacg tgacggacgc
     7801 tacaccttaa tcagtattgc tccggaggaa ggtcaaaaat atctgcttga acaagtcgta
     7861 tcagtcaaag tctccaatcc taaaaatcgt tttactgcga atgtccagca aggtttgcgt
     7921 tctacattaa ctaatacggg tttagatttg tgttatccac ctatcggaga acaaggtaat
     7981 gcggttcaaa cactttttac ccgacctctt ccaaaagttc attaccaatt cggtccgatg
     8041 aaattatatg aagctctaca aatgattgca ggtcccgctt atgaactaac tcttaatgat
     8101 atatcccgta cgatttgctt taaagctcgg gaaagttcat tccaaaaccc tcataaacct
     8161 gctgttgccg ttacaacgac aacaattaaa accgaggtca ttgaggaata atgagggaaa
     8221 tatcaatgaa gtttaattta tgccgtaaag ctataccgtt ggcagtacta cctcttttat
     8281 tgtcctttgc attacctact ctggctcaaa atatgcaaac agagaccgta agtagctcac
     8341 aatcgacttt gcagaaacaa agccaacatc aacaatcaca attaagtgat agcctaaaac
     8401 aggctaaaga atggggattg accgttgaag aatggagtcg ttataccgaa ttaatgaaag
     8461 gtgagcgagg tatgtggtcg ccaaatctag atccgttaac tgctttaggt atcgaagcac
     8521 gaactgctga ggaaagggaa aaatatgctc gtatgttggc gaaaaaatat tatgaacgag
     8581 tgtcaaaaga acttgatttt gacaaagttt atcgtcagga gtttgagaaa ctttatccga
     8641 atgagctacc ttttgaggtt gaaccacata tttctcaatc ggtaggtcgt gtggtttatt
     8701 ttacccgttt tgataactgc gattcttgta aaagtgatct tgggaaaatc ctctcttacg
     8761 caaataatca aacacctctc gatatttata ttgttgggca aaacatctcc gataatgata
     8821 ttcgtaaatg ggctgccgac aataatattg acccaataaa agtcagtaaa agattgatta
     8881 cccttaacca cgataaaggc tattggctga gatattcgtt aggaaaaatg cccgctgctt
     8941 accaaatcaa acaggatggt gaatggacat cactcgtgta ttagtcattg ttgcagtctt
     9001 tctttccaac attagcattt ctcaggcaaa gcccttcaat ggatttggtt ctgaaattga
     9061 cagctatatt cgtatggctg ctcaacgtta tcaggtgagt gaagcaatgc tacgaggttt
     9121 tgtcaaaatg gaagatggct ggtatggcaa catttcacca acaggagcaa ccggtgttgg
     9181 gcagtttact atgggaacct ggaactggct atctgaaaca gagaggggaa agcaacttgg
     9241 tatgaagttg attacagcca aaaatcgggg ttcttacgcc gatccccgtc gagataaata
     9301 tacgaatacc ttagcaacgg cattattggc acgttggcat attgagcaat ttcaactccg
     9361 taatatccct attactgatg agaatttata tatggctcat aatatcggct tagatgggct
     9421 gcatcgagca atgatgggga aagctactaa agaagacatt ttaaatatgc gtcgtaatgg
     9481 aatgaaaagt tggatgacgg taagagactt tctcaattac caaaaaggac gttttttagc
     9541 acataagcaa gaagccaatt ttatgactgt ctccaagcaa gggcatattc ataccggagt
     9601 tgcagctttc gtttatccca caagccaaat gggaaaatcg gtcaaatggg ttgagccgga
     9661 taataaaatg atttgggttg aacctaaaaa tgcaatggtt tgggtagaac cccaaaatac
     9721 tcttcagagg taaaaatgca aaacaaggta aaagtattat tgtttagttt atatgtgtcc
     9781 catttctctt gggctgattt aaccgtgatt gctgatttcg gtggtgaaag tgcggtacgt
     9841 ttttatgaat ctttgcaacc ggaacacgat gaaaatgcac caaactatcc gaattccatt
     9901 tcagcctcag tgagtgaggc tgatatttta cccattgttt cccataaact atctcccggg
     9961 actattaaag aaaaaccatt tgatttaacc ggaatgcaag ccattttctt aattggagca
    10021 gataatacct cagctcagtg gttacaacaa aatcgagaga agttgatcac gttgaatgca
    10081 acagggcttg tagtgaatgt acaaacactc tccgaactta atcaattacg agacattgta
    10141 ccggaactga gaatattacc aactcccgga gatgaccttg cagagcgaat tggtattgca
    10201 cattaccctg tcttaatcac tgaaagcgga gtttcacaat aatgtctgct aaacatacct
    10261 tagaggcgtg gttacgacct cctgttgaat tttttccggc agcggttcac gcttcttgtg
    10321 cctttgtcag tgctgcagct ccttggtctt tggcactcca tccaagtatc ggttacagta
    10381 ttgcagctgg ttttggagca ttgagctttt atcgggcaaa acaaggttgg caaattgtgc
    10441 gttaccatcg caacctgaaa cgtttgccta attattcaat gacaagcaag caaattccgg
    10501 tcagtaataa gtatctgttt gtcggtaagg gatttgaatg gaaacctatt cacactcaac
    10561 ggttacacga ttgtttttcg gataacggtt caaaatatct ggagccttct aagctattta
    10621 aaatggctcg tgagtatgaa aaacgacacg aaaattggct aacacatctt acctcaaagg
    10681 atagccggtg gaatctggtt agacctctgc cacctgttga gggtattcct gctatccatg
    10741 gaattgagcc ggatgaggtt gatgtcgttc aatccgttag ctctcgggtt gggcatacgg
    10801 tagtattcgg tacaacacgt gtcggtaaaa ctcgtttagc tgaggtcttt gttacccagg
    10861 atatccaccg aggtaaaact gctgatgagc gtgaagtggt agtcttcttt gatccgaaag
    10921 gcgatgccga tatgctcaaa cgaatgtatg cggaggcaaa acgagcgggg cgagaagatg
    10981 agttttatgt tttccatcta ggttatcccg aaatttctgc ccgttataac ccagtaggac
    11041 gctttaatcg tatttcggaa gtcgctgggc gtatttcagg acagctaagt ggagcgggta
    11101 actcggcggc atttaaagag ttcgcttggc gatttgtcaa tatcgtcgca cgtgcattag
    11161 ttgaattggg aaatcgccca aactatgttc aaatttccca gtttgtacaa aatattgatt
    11221 cattattcct tgattatgcg gaaaaattca ttcgtaaaac cgatccaaaa atttgggaaa
    11281 atttagcaac catcgccgct ggactggatg aaaaagcact tcctttcgga atgaaagacc
    11341 gtccgctgat ttttgtgatc aacaagtaca ttgctgaaag tgcagtcttt gacccaattc
    11401 tacaaggact tgccagtgct gtacgctatg accgtaccta tttcgataaa attgttgcct
    11461 cattgttgcc gttattggaa aaattaacga cagggaaaat ttctgagctg ttatccccgg
    11521 attatgctga tattttggat gaacgtccga tttttgactg ggaatccatt attcgtaaac
    11581 gaggaatcgt ttatattggt ttagatgctc tctctgatgc gacagttgcg gccgctgtag
    11641 gaaacagtat gtttgctgac ttagtctcaa tggcaggtca tttatataaa tttgggacaa
    11701 atgacggatt accgggagca ttcaaagaaa aatccaaacc agtgaaaatt aatcttcatt
    11761 gtgatgaatt taatgaattg atgggtgatg aatttatccc tctcatcaac aaaggcggtg
    11821 gtgctggaat acaagtaact gcttatacac aaacactctc cgacattgaa gctcgtatcg
    11881 gcagtaaacc gaaagcggga caaaccttag gtaacttcaa tacactctat atgctgaggg
    11941 taaaagaacc ggctacggca gaattactca caaaacagtt acacgaagtg acgattaaac
    12001 gtagcacggt cacgtccagt acaactgact ccagtaatcc tgacgatgat aaggcgttta
    12061 gctccaatac cggacagcgt atcagcgaaa gtaccgttcc tatgttggtt ccggccaaca
    12121 ttaccaattt accaaaagga caagcattcg ctttaatgga cggtagtaaa ttatggaaaa
    12181 ttcgaatgcc gttacctgct gtcgataaag atgatatgat gcatcaatct ttacgagagc
    12241 tgacagatta tatgcgtaaa aactatcacg ttgttgaaaa ttggtggcaa ccggcattta
    12301 cagaatatac gccgtcccga gacattgcag aagcatttga agcgatgtcg gagcctcaat
    12361 ataaaacaca gatagaccat caagtagata atttcggcat agatgaacct tacgatattg
    12421 atgaagagga aaatgatgag tagtgccaaa atgagagagg aaaaaagaac caatctatta
    12481 gatttaccaa ataaataccg taattttaat ggggagtttt cagcttcctg tggcttagat
    12541 aatgcagaag aactcctgat tcatagtcaa tcctatttta ttgaatggtt tgaacaaggt
    12601 tattccttcc atcagtttgc cgaaaaattc gcagatcaag ggctttcgtt atggtctgcc
    12661 gatgaagtat ctatgcgtca ctcggataaa tccaaagata ttttcgcttt ttatcttgct
    12721 tttgataata atccttccgg ctatatcctt gtccagtgcc agctcgatag agaggatagt
    12781 ttgcaatgag tgaagaaact aaagctcgcc gaaaatcagg tttaatcaac ctgatttttg
    12841 gaaaaataaa tatgtcgctt gctgcaattg cagtatctct catattcagc attattttag
    12901 agtggatagg cattgctttc tggtggccgc aagaagggca tttgcatagc caaacgatga
    12961 tgctcaatga gatgcaatgg ctatcggatg acttttctca aagcctgttt gccaagtctt
    13021 ctactgcttt tgcaacatca attattgaaa acgtgtataa ctggttattc gtttatacgg
    13081 gtgttaagga gtggttaact tcaccgggta atggtagtat ggaacagtgg gtacatcact
    13141 acggcagagc ctatattgaa tctgttattt atgtggtgat cacctttatt attcgcctca
    13201 ttattattgt ttttaccagc ccactctttt tattgactgc actttccggt ttaaccgaag
    13261 gactgtcatt acgagatata cgaaaatttg gtgccgggcg ggaatcagcc tacctatacc
    13321 atcacgctag acgttatatt atgccaatga tggtcacagc ttgggtgctt tatttatcta
    13381 tcccgttttc aattcatccg aacatcattt tagtcccagc agcctgtttg tttggtttat
    13441 ccatctgtat aactgcggcg agtttcaaga aattcttgta aatttcataa gcccttagca
    13501 atatgcgggg gcttattctt ctgttgttgc ctctgtatct tcattttctg actcagtatc
    13561 ccaatcagaa tcctcccagt cttcgacttc ccaatattgt ggatattcat catcttcaat
    13621 gatttgttca gaaatttgtt cagaggtatt ccaaatagga aattccccgt actcatccaa
    13681 ttgtaactct atcttttttc gctcatcatc gcctagaaat tgccaataat tacagattaa
    13741 ctttcctctt aaacttaatt cccaaagacc tccgtaatta tattgagcat tttctgcatg
    13801 gcaaatattc cccactttct gtgctgaagg aagagaatgg gcaacatatg ggaaaactac
    13861 aaggaacagt gctagatatc tcatctggta tctcatcgta aagcgtgaag atttcggtgt
    13921 tgatactact taattgacta gcttaaacat agaataatat ctttctcacc atttactatt
    13981 ttgtgcaatt tctcttctga acggtaacag agttttccat taaattttag gatcgctttt
    14041 ggcactctta acctgaagta aaactaaaaa tagaggtgca ctatgtctat ttcaacatct
    14101 ttaaggaaag gtattgttgt ccttgttacc ttatcttgct tgccagcact tgcttcaaca
    14161 gaacaagagc aattagccca ggcaattaag caactggaag cggcaaaatt atcacttcaa
    14221 cgagcagaaa aagtagctaa agcctcgcct aaaacacgag aatactttaa ctattctgct
    14281 attcacagtg atattgaaac cgtcaaaaaa ggaattcaac aatatatcaa tccaagccga
    14341 gcattacctc gtgatccgaa tgtactacgt acattaagtg atgattatag caaattacgg
    14401 gggcagtgat gtcttactcc cctgcgaatg cgttttctgt tgccagcggt atcgaccctt
    14461 ttagattgaa aatcatgatc gccattattt ttctttcatt actgctctta gccgtcgctt
    14521 gggcattgaa tagtggttat aagggatttt catttagaga taaaagtcct ttttcacttt
    14581 tagttttatt tctcaaagga gtggcactgt tagcttgtgt tacttatttc tttatctatt
    14641 agattcgagg tctattatga accgcattaa atctcttacg aaacatctgc atagtcgtta
    14701 tttggctgta atgctcttct tctggggttc cctccaaaat gcatttgcag ccggtcctga
    14761 tgcttccaaa atcccagact tccaaattcc aggcgtggat agtaatacca aagatccaat
    14821 ggaaattatt tggattgttc tgaaaggtct tgtcactctc ggagctgtta ttttagcagc
    14881 cgtagccatt ttgacagttg ttaaagcatt gattggcatc tataacgaag ctacatctga
    14941 aaatggtaaa aaaggttggg gacactttat tctcgcctta attatcggct ttattgtgat
    15001 tttcttctgc ttgtggttag tcaaacttgc agtcggactc ttctaattaa aatgtctagg
    15061 agaccaatat gtcagaacaa gatacaacca ttccttttct tcccacccgc cttaatcgtg
    15121 aagctaccgt ttacggtggg atgacagtta gtgagttcgg catatctgcc ggattaggat
    15181 ttatgttagg tctgattgtt ggtctcttct tgtggatatt aactgatttt tggcttctta
    15241 ttccggcaat ggcaatgttg ctctgcatcg caactgtctt aatcggaaaa ggtattgtcg
    15301 ctgcggttaa acgaggaaaa ccagaggctt atttaaatag attagttgaa aagaaaatgg
    15361 atgacctctt taacggtcat aagtttataa aacgagaagg gttttggtct attcgccgat
    15421 atagaaggaa ataacaaatg agccagttaa aaagccaatt acacgaaaaa gataaacata
    15481 tcaaaacgac tcgaattttt gccttcctgt ttttcattat tattttggta ctggcaggcg
    15541 taatctatac tttcccaagt cgccttacga tatacaaccc accagatctg cgtgctggga
    15601 gccaacgagc ttggtgggaa attcctaaac caacaattta tgcattctcc tatcaaattt
    15661 tccagcaaat gaatcggtgg atgacaaatg gcgaagagga ttatgagaaa aatatcacca
    15721 ccctcaaacc atttttaaca ccacactgtg aagcattttt acgacaagat tataaagatc
    15781 gtctgcgtaa caatgaacta cgcagccgaa cccgtatggt gtatgaaatt accggtagag
    15841 gatatagtga agataaagtt accatattca gtgaagatag ttgggctgtc aatcttgatt
    15901 taagtgtgga tgaacatttc caaggacagc cggtaaaacg agtttatatt cgttttccta
    15961 tcagtattgt gagaatggat gtcgattctg ctcaaaaccc ttggggatta gggtttaatt
    16021 gctatcactc cattccaaaa ctcttagaag gtgttgagcc aaaaacagag gagaaaaaat
    16081 aatgaaacgt ctaccaattt tgctcgtctc tttgcttata ggcttctctg ggagtagctt
    16141 ggctgatgta ttgatgaaat gggaaagaaa accacttcct gttgcgttac aagtggaaaa
    16201 agaacgaatt atttttgtcg ataaaaatgt caaggttggt tatccggcag aactggacgg
    16261 taagctacga attcaatcta ccggtggagc cgtctattta aaagcattag aaacatttcc
    16321 ctccactcgc atagaattcc gtgatgttac aaccggtgaa atttttctat ttgatttaac
    16381 agcagcttcg aaagtcgcta atcctgaaga ggcaattcga gtggtttttg acggtacggt
    16441 agaaaaacaa tctttttcaa gcaatagaga tgatgaaagc tctgatctgc ctattgcgaa
    16501 tagccgtcct cagcttccag tacctgccgc attgacccgt tatgcagcac aatcacttta
    16561 tgctccacta cgtacagttg aacctttaga tggtgtgcgt cgtgtggcac atcgtctacc
    16621 taaaaaaatt accaagctgc taccggctta ttcaatagaa gcaacacctt taattagctg
    16681 gcagttagac gaatatgtag ttaccgctat tcgtttgcaa aataagggta acactcaaat
    16741 tacgcttgac cctcgagagc ttcaaggaca attttatgca gcgactttcc agcataattg
    16801 gcttgggggg tacggagaaa atgaagatac cacaaccctg tatttagtga ccgaaggcta
    16861 tgctaataac gcattaattc cggaaacccg tccagtcaaa ctagtcagta aaaaagtgaa
    16921 aagaacaaca aaagttgaaa ctaaaccggc tcaatcggcg aagtaggagg aaaggcaatg
    16981 aaagcgaata aagccttatt tgtcatactg ggcattgtat ttatcttagt cggtggaatt
    17041 gtctatgcct tatttggacg tagtgagtca gttccacaac cgacacaaca ggaaatttta
    17101 gatatttcca ttaaagattt aacacctgaa caagtcagaa caatgggtat tcaaggtgat
    17161 acgccgattg atacgctgcg tacccttgtg acaaccgtta aatccaatga gcgtcgtatg
    17221 gatgagttaa ttgatgaaaa tcgccaactc aaacagaaag aagatttagt gaatggtcgt
    17281 atcaatgatg cggtaaataa tgaaacccga aaactgcaag agcagattgc agatttgaaa
    17341 atgcaattat ttgatatggc gactctcgtt aataacaaac caacaacaca agagtctacc
    17401 cctcaggtag aggctcagcc taatacggta ccgaataaag gatttggaac agcaggagat
    17461 aaattaccta tcggtggtgc aactatgtcc aacgtggata ccagtggaat gtattgggta
    17521 gaaccaagcg atcagattag tttggatgca agtggaaaac ctgtgtcagg caatacagta
    17581 gcaactaaat ttggctttcc gaaagatttt aatggaggac aatctgcagg aaataacgaa
    17641 aagaaaggtc tgccgttttt cccggaaaca gatactgtga caagctcaca aggaacggct
    17701 ggaaacgcac gtggtaaaaa ccagatgaca tcagtatata ccataccaag taattcaaca
    17761 ttccttgatt cagttgcaat gacgggactc atcggacgta tcccgattga taatcgagta
    17821 tcggatgctt atccgttcaa agtacttatt ggtcgagaaa atctcattgc taatggtatt
    17881 gaattacctg atgtagacgg agcaattgta tcaggtactg ctactggcga ctggacacta
    17941 tcctgtgtta gaggcagtgt aaaaagtatg acttttgtgt tcaatgatgg acgtattgtg
    18001 agtacctcta ataaagggaa tggcgaagag attggctggt tatcagatag ttcgggtatc
    18061 ccttgtgttc caggagagcg gaaaaccaat gccccagaat atttgggaac gaatttcttt
    18121 ttggctgctg caagtgctgc tgcccaagga ttctcacagt cacaaacaac cactgttgtt
    18181 gatggaagta gtgttgttgg agctgttacc ggcgatcagg gtaagttcat cttaggacaa
    18241 gctatcggag gcggcttaaa agaatctgct gactggttta gaaaacgttt tgctgaaaac
    18301 tttgatgctg tatatgtgcc accgggtcat cgtgtctcta ttcatatcga gaaagagatt
    18361 gaaatcgatt acaacgccca aggtcgtaaa gtgaaatatg gctcaaaatc aacgaattca
    18421 caactggatt agaaggaaca aacgatgaaa catttatttt gcataatgat aagtgcctta
    18481 ttgataacag gttgcacaac atcaacagaa gaattattac ctactaacgg cagtacgatg
    18541 cgggatattt gggataaagg agcgagtaat aacgatctac acttataccg ttcacaacaa
    18601 gggcgaacac ttgaccctgt cgattatatt cctaatagtg agcaacgagc ctatacccgt
    18661 acggcagaaa atgaaattaa taacttgttc cctcgtttac ctaatccgga tctgattatg
    18721 tatgtgtacc cacatcaaac tcgttccgga gagcctctca gtattccagg atattctaca
    18781 gtactacctt tctatggacg agttcaatat gctcagccgg gtgatagaac aagagggctt
    18841 taatcatgtc ttttttaagt gaggtatttt cctctttcaa accgactaaa gcaggggtta
    18901 tatcaagtga accaaatgaa aataccggtg agtctgacat cattcaaaat aaaatgagtg
    18961 aggtaaataa cgaggttcaa caattaaaac gcagtggaaa actcacccag tcacagcatc
    19021 accgtcggtt atactcacaa gagccctcct ttatcgatca tctaccttgg ggagaatatt
    19081 tgaatgagca cggtgtgata ctccttgatg atgcccgtag tgttggggca gtatttgata
    19141 ttaagccgat tggtactgct ggccgtagta ttgaattttt aagtcggata cgtaatcttg
    19201 tcaaagatgc cttacaagat agctttgatg agctggatat aaatccttac gtcgtgcaat
    19261 tttattgcca agatagcgat gatttacagc cttatattga acagctacgg aattatatct
    19321 cgcctattgc ccaaaatagt gcatttagcg aagaatggtt acgagtacaa gccaagcatt
    19381 tcaaggatat tggtaaacca gaagggcttt ttattgatga cagagtgaca aatacagctt
    19441 ggtctggacg tattcggagt accaaaatgg tgatttatcg atatgtagat aagtccaatg
    19501 attccaatga aaatcttatt attgagcagc ttaataatgc ttgttcccga atcaatgggg
    19561 ctctaacaac ggctggatta cagttacagc ggctagatgg tgaacaaatt cgccaatggt
    19621 tattgcgttg gtttaatcct aatccatcta ttaattttga gggattaagc aacaatgatt
    19681 gttaccatct ttttggcaaa caaacctcaa atgacgggct tccagaatta gcgtttaacg
    19741 atttcagtga agatttattt tattctcaac cgaaaaatga aggcaactat tggtattttg
    19801 atgaccaacc gcacgaagtt gttgtagtca ataatttaag aaaacaacca gaagtgggct
    19861 taatgaccgg cgagattact cgtgggcgta atattaatgc gttatttgac ctattgcc
//
LOCUS       DANMBQ010000028        19908 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.028, whole genome shotgun sequence.
ACCESSION   DANMBQ010000028 DANMBQ010000000
VERSION     DANMBQ010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19908
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.028"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(79..717)
                     /locus_tag="PXE92_000923"
     CDS             complement(79..717)
                     /locus_tag="PXE92_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HDL5760188.1"
                     /translation="MRYTTEQIIEKLRQLKVVPVIALDKAEDILPLAKTLSENGLPVV
                     EITFRSEAAEEAIKLVQANYPEVLIAAGTVLTKEQVLTAKNAGADCIVTPGFNPTIVK
                     YCQVLGLPVTPGVNNPMAIEAALELGIQAVKFFPAEASGGVKMIKALLGPYGNLQIMP
                     TGGISPQNINDYLAIPNVVACGGSWFVEKSLIKEQKWEEIGKLTKEVVELVK"
     gene            complement(805..1752)
                     /locus_tag="PXE92_000924"
     CDS             complement(805..1752)
                     /locus_tag="PXE92_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HDL5760189.1"
                     /translation="MKKLAILGECMIELNGEPFGEMHQTYGGDSLNTATYLARVSSPE
                     QIEVRYISALGTDKLSQGMLAAWQVDNINTDFVLRDEHRQPGLYLIQLDKQGERTFLY
                     WRNQSAARYLLQHPGYPKALSALNEVDMVYLSGISLAILPENDRTLLIAQLRELKTQG
                     VKIAFDSNYRPKLWESVAAAQAHYAELLQLVDLALVTFDDEQLLWGDVNEQATFDRLT
                     QYGIQTIVVKQGSLGATVLQNGERTFVPTVAVEKVVDTTSAGDSFNAGFLNGYLLGKD
                     VVTCCQQGNAVAGIVIQHKGAIIAKSATTHLKSQFEQSI"
     gene            complement(1769..2614)
                     /locus_tag="PXE92_000925"
     CDS             complement(1769..2614)
                     /locus_tag="PXE92_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5760190.1"
                     /translation="MSIAQNHNFKDKVVVITGAGGVLCAYFAKEIAKTGAKVALLDIN
                     LEAAQNFASEIADEGYIAKAYQTNVLELESIKQARDEILKDFGTCDILINGAGGNNPK
                     ATTDNEFHDINLPENTKSFFELDKAGIEFVFNLNYLGTLLPTQVFAKDMLGKEGANII
                     NISSMNAFTPLTKIPAYSGAKSAISNFTQWLAVYFSKVGIRCNAIAPGFLVSNQNKAL
                     LFNADGTPTARANKILTNTPMGRFGQADELVGAILFLMDHHYSSFINGVVLPVDGGFS
                     AYSGV"
     gene            complement(2626..3897)
                     /locus_tag="PXE92_000926"
     CDS             complement(2626..3897)
                     /locus_tag="PXE92_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005668000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HDL5760191.1"
                     /translation="MLWLFLGSLFLFLFLGVPVALSMLLSASFMLWKMDMFDAQLITE
                     NFVMGTNNFPLMAIPFFMLTGEIMKHGGISERIINFAMSMVGHIKGGLGYVVIISGLI
                     FAGLSGSAVADTAALGAILIPMMVARKYDVARSTGLICAAGIISVVIPPSIPMIVYGI
                     TAGASITKLFMGGMVPGFLMVLGLWLVWKFLYRNEEQTVEPKKTGKERWAAFKSAFLP
                     LLLPIIIIVGLRGGIFTPTEAGVVAAIYAAIISIILKGLTLDKIQDVFLGTIKTTAMV
                     MFVAAAAMISAFAVTVAQIPMELVEFIKGITDSPTVLMFVIMIFLLLVGCVMDLIPAV
                     LIFVPVLLPLLRAYNIDIAYFGIMMVINLSIGLITPPVGTVLYVGSGIAKIGIARLTK
                     GIYPFLLVYAAILFLLILFPEIIIVPMNWLS"
     gene            complement(3900..4379)
                     /locus_tag="PXE92_000927"
     CDS             complement(3900..4379)
                     /locus_tag="PXE92_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL5760192.1"
                     /translation="MQISTALDRTLKLLAIIALSTMIILVFFNAVLRYFFDSGIAWSE
                     EFARICFVYMIFLGIILVAKERGHLTVDIVVSALPAKVQMYLLFFADILVLVALSFIT
                     YGAYQLMLLTYTQKMPATEISSAFLYFAAVISSISYFAIVFTNLWKHIRLAFIKEEK"
     gene            complement(4440..5423)
                     /locus_tag="PXE92_000928"
     CDS             complement(4440..5423)
                     /locus_tag="PXE92_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5760193.1"
                     /translation="MKLKTFTKALLISSLMFTGSAFAKTIIKIGHYNSDVHPSNIALQ
                     EYFKKTIEEKTEGRYEIRIFPNNQLGGEDQIVNGLRNGTIEGGITGLLLQNVDPIFGV
                     WEWPYLFKDNAEAKKVLESPIAQEIGEKMEKYGIKLLAYGMNGFRVISSNKKVENFDG
                     FKGLRLRVPLNSLFVDWAKAMHINPQSMPLSEVFTALEQKVIDGQENPYMLIKDSGLY
                     EVQKYIIESNHIFSPGLLQLSLKTWNKMSKEDQTIFLEAAKLYQEKEWELAMKMEQDV
                     KDFFHKNGKEVIVPSEQFKADMLKASETLYQNFYQKYDWAKDVISKIHAAK"
     gene            complement(5452..6477)
                     /locus_tag="PXE92_000929"
     CDS             complement(5452..6477)
                     /locus_tag="PXE92_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HDL5760194.1"
                     /translation="MEKPLKSVCLVEPNKVGIQTVSYPVKGENDVLIKVEGMGICGSD
                     IGAFRGTNPLVTYPRILGHEIVGTVIESGKGMPNNINVGDRVIIEPYIYCGHCYPCSI
                     GRTNCCESLKVLGVHIDGAMQEVVRHPAHMIIKTPDMPIHELALAEPLTISLHAIHRT
                     KVKAGEHVAIIGAGAIGLMAALVAKAYGATPILIDILDKRLDYAKSIGIPHTINPTKE
                     NDLEAIKSITNGRMAEVVIEASGANVAVQNTLKYTSFAGRIALTGWPKTETPLPTNLI
                     TFKELNIYGARTSKGAFEEALELLASRRIEPKDIISKVITFDEIPHYIEELSANPDDY
                     LKIIAVF"
     gene            6641..7402
                     /locus_tag="PXE92_000930"
     CDS             6641..7402
                     /locus_tag="PXE92_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HDL5760195.1"
                     /translation="MQNSSRTYTKIGKILKEEIAQGKYRVGDKLPTERDISERFEVSR
                     TIVREAIVMLEVEKLIEVKKGSGVYVIRVPELFPEDFPEEKDNELRDVGPFELLQARQ
                     LLESSIAEFAAQQATKQDIQVLRNILESEKKLLLEKMDDYSADKEFHLALAHMTGNDV
                     LIQLQEQLWRYRFNSAMWAQLHSRILQHDHHHLWIEDHERILNAIQRKNPALARKAMW
                     QHLENVKTKLLELSDVEDPKFDGYLFNVNPVVVGI"
     gene            7432..8616
                     /gene="uxuA"
                     /locus_tag="PXE92_000931"
     CDS             7432..8616
                     /gene="uxuA"
                     /locus_tag="PXE92_000931"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HDL5760196.1"
                     /translation="MEQAWRWYGPNDPVSLDDVRQAGATGIVTALHHIPNGQVWSVEE
                     INKRKALLAEKGLVWSVVESVPVHEEIKTQTGNYQQWIDNYKQTLRNLASCGIDTVCY
                     NFMPVLDWTRTDLEYEMPDGSKALRFDQVAFAAFELYILKRPGAEATYSSAEQAEAKA
                     YFEQMSDADIAKLTKNIIAGLPGSEEGYTLEEFQAQLDRYQGLSAEKFRTHLAYFLNE
                     IVPVAQEVGIRMAIHPDDPPRPILGLPRIVSTIEDMQWFVETQPLAANGFTFCTGSYG
                     VLAENDLVKMAEQFADRIYFAHLRATQREENPQSFHEADHLAGDVDMFGVVKALLTEE
                     YRRKANGDHRLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLRGLAEFRGLELALKKVYF
                     ND"
     gene            8667..9536
                     /locus_tag="PXE92_000932"
     CDS             8667..9536
                     /locus_tag="PXE92_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5760197.1"
                     /translation="MFKKYFGEIILFLVTFIAAAGWFFSKHALVGLPPIGFMGGRFIL
                     ASLILLPFSYRELYRLDKVQVKYSVITGLTYGIYTIFWVLGLAFSTVFGEGAFLVSLA
                     MLIAPLLSWLIFKHTPPKIFWLALPIALSGLYFLSAEKGIFHFSLGSTIFLVSSVFGA
                     LYFVLNNQYAKQVSLFPLITIQLAIVGAVCSLYSYFMESWHFPILTEVWLWFAASVLI
                     ATNLRFLMQTLGQKYCHIGTSALIMLLEPVWTLLLSVMLLGEQLSATKWLGCSLILIA
                     LIIYRLPILRLKK"
     gene            9704..10018
                     /gene="rsfS"
                     /locus_tag="PXE92_000933"
     CDS             9704..10018
                     /gene="rsfS"
                     /locus_tag="PXE92_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDL5760198.1"
                     /translation="MEQNLVEFLTKTLDDLKAQDILAIDVKGKSSITDTMILATGTSS
                     RHVASTAERLITEAKQAGFEVFGDEGKAVADWIVVDFGKAMVHLLQSDSREMYQLEKL
                     WA"
     gene            10095..10562
                     /gene="rlmH"
                     /locus_tag="PXE92_000934"
     CDS             10095..10562
                     /gene="rlmH"
                     /locus_tag="PXE92_000934"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010618862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDL5760199.1"
                     /translation="MKIQLIAVGTKMPAWVTTGFEEYQRRFPKEMPFELVEIPAGKRG
                     KNADTKRILELEGKAMLAAAGKAKIVTLDIPGKAWTTEQLATQLEGWKNDGRDVALLI
                     GGPEGLSPECKAAAEQSWSLSPLTLPHPLVRVVVAESLYRAWSVTINHPYHRE"
     gene            10586..12535
                     /gene="mrdA"
                     /locus_tag="PXE92_000935"
     CDS             10586..12535
                     /gene="mrdA"
                     /locus_tag="PXE92_000935"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDL5760200.1"
                     /translation="MFGKLAKFTASNQREKVRDGQAESNLYARRALVAFLGVLALSGV
                     LLTNLYHLQVVNYEDYQTRSNGNRIKLLPVPPARGLIYDRNGKVLAENLTYFGLFIVP
                     EKTENIEQTLTELKDIVGLTDEDIENYHKEKKRSSRYTPIMLKGNLNEAQMARFAVNQ
                     YRFPSLDVQAYYKRNYPYGELLTHIIGYVAKINENDKKKLQEAGKFGNYAGSHDMGKL
                     GIEKFYEDQLHGVTGFEEVEINNRGKVIRKLRDQAGVAGSSIRLSIDVELQQYVMSLI
                     AKHKGAVVVLDPRDSSILAMVSNPSYDNNLFVGGISGQDYKALLDDPTRPLYSRTTQG
                     TYPPASTIKPFMAVAGLEEGMITPSTTISDPGYWILPGTTQRYRDWKRSGHGATNVNK
                     AITESSDTFFYQLAYKMGIDKMSDWMKKFGFGVKTGIDIFEESAGVMPTREWKQKRYK
                     KPWVQGDTIPVGIGQGYWISTPLQLAKATAVLINNGRVNTPHLMLEVQSSNSVTPYQD
                     PLLYEDIKGVPDVYWNLAKQGMYNVNHAANGTARKVFAGAFYHSAGKTGTAQVFNLNG
                     KNYDKNAIKKELHDHAWFIGYAPYEQPKIVVALILENAGGGGSAAAPVARQIMDYALR
                     KGIGEQPDSQNSEQNKPLVTEEHHE"
     gene            12528..13655
                     /gene="rodA"
                     /locus_tag="PXE92_000936"
     CDS             12528..13655
                     /gene="rodA"
                     /locus_tag="PXE92_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDL5760201.1"
                     /translation="MNSGFKKLFWKIFSLDLLLLSGLLAITGYGLLVLYSASGANERM
                     FTSRLIQVSLGLGLMLIMAMVPPRFYQKVSPYLYIFCLILLILVDLVGETSKGAQRWL
                     NLGFVRFQPSEIAKLAVPLMVATYLGKRPLPPSFKDTFIALAIIIVPTLLVAIQPDLG
                     TSILVCSAGIFVLFLAGLSWKLIGAGVVFLAGFIPIMWFFLMHDYQKTRVMTLIDPNK
                     DPLGAGYHIIQSKIAIGSGGINGKGWMEGTQSQLEFLPEPHTDFIFAVLSEEHGMIGV
                     LILLAIYLFIIARGLVIGTKSDSAFGRILSGGTALLFFVYVFVNIGMVSGILPVVGVP
                     LPLFSYGGTSYVTLMAAFGLMMSTYVHRKRVGSNNPYDKLK"
     gene            13747..14406
                     /locus_tag="PXE92_000937"
     CDS             13747..14406
                     /locus_tag="PXE92_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HDL5760202.1"
                     /translation="MRLGKIVTLLLAGFLTFSSLNSLAATKNTKAKSSILAKKQATSK
                     AIKKVGISKVKKKEVVAKATKKKTISTVTTKPIKSTKKLARKVVKKTVTAKKKLVKKQ
                     HKPLVKKHFQTGVASYYANYFNGRRTANGETFNNAKMTAAHRTLPFGTLIEVTNLRNG
                     RSVVVRVNDRGPYAHARVLDLSSAAAKKIGMHHSGTARVKIAIVDKSKLGSTNQFYVM
                     N"
     gene            14420..15598
                     /locus_tag="PXE92_000938"
     CDS             14420..15598
                     /locus_tag="PXE92_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HDL5760203.1"
                     /translation="MKKTLVKAMSVVGFAVSSIAYADLNTNFNLSAPQINAQTYILMD
                     YNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDMVIVTENSWAQKFPG
                     SSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLK
                     NTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNG
                     LLWDKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREVESKKLLQW
                     GFANFETIKSIPAAQSVAEQSVYYGEVNKVQLGSVQDSFVTIPKGRSADLKARYELEK
                     KNLEAPLAKGQVVGKMIYQLDGKDVASTNLQVLQDVPEAGIFGKAWDWIALTVKSLFD
                     "
     gene            15766..16065
                     /locus_tag="PXE92_000939"
     CDS             15766..16065
                     /locus_tag="PXE92_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HDL5760204.1"
                     /translation="MSQPKAINLQDLPQAKLKDLLEFPCHFTFKVVGANREDLVDDVV
                     VVTQKYAKGDYNPRQQKSSKGTYNSVSIDIVAENIEQVETLYTELAKINGVRMVL"
     gene            16127..16780
                     /gene="lipB"
                     /locus_tag="PXE92_000940"
     CDS             16127..16780
                     /gene="lipB"
                     /locus_tag="PXE92_000940"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HDL5760205.1"
                     /translation="MKLIIRQLGIQPYEEIWHQMQSFTDSRDGNTDDEIWLVQHPAVF
                     TQGSAGKPEHLLNPTNIPVVQSDRGGQITYHGEGQQIMYVLIDIKRLKSLGKEVSVRD
                     LVTALEQTVVQTLAEYGIESYPKADAPGVYVDGKKICSLGLRIRKGCSFHGLALNINM
                     DLTPFQNINPCGYAGLEMCQLSELVHRPDLRCEEVAPKLVAHFSTILGYNNQQIINN"
     gene            16795..17802
                     /gene="lipA"
                     /locus_tag="PXE92_000941"
     CDS             16795..17802
                     /gene="lipA"
                     /locus_tag="PXE92_000941"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HDL5760206.1"
                     /translation="MATSTAQTTATATVKKMSPFKMEKGVKYRDAAKTSVIQVRNIDP
                     DQELLKKPEWMKIKLPANSAKIDSIKNGMRRHGLHSVCEEASCPNLHECFNHGTATFM
                     IMGAICTRRCPFCDVAHGKPLPLDPDEPRKVAETVQDMKLKYVVITSVDRDDLPDRGA
                     AHFSATVREIKALNPHCKVEILVPDFRGRVEQAVAILKENPPDVFNHNLENVPRLYRE
                     VRPGADYKWSLELLKIFKQEFPHIPTKSGLMVGLGETNEEILEVMQDLRDHGVTMLTI
                     GQYLQPSRHHLKVERYVPPAEFDMFREEAEKMGFEHAACGPFVRSSYHADLQAKGELV
                     K"
     gene            17989..19092
                     /locus_tag="PXE92_000942"
     CDS             17989..19092
                     /locus_tag="PXE92_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5760207.1"
                     /translation="MKKLLLNSVFAATLLAFGATANAEIKTITDVLGREVKVDVPAKR
                     VALTFYYPDYIAVTGVENFDKVVGISREFWEKFNPGSWALFAEKMPNLKNIADLGYVN
                     SGTFSTEKTIALKPDVLVLPEIQYQALASEISRIEQAGIPVVVDFNKQTIENHTKSVR
                     VFGQLTGTEERAEKIAKEYEEGIADIQSCIDNAKVSKPKIYAEFGNKGPKEHSFTFGK
                     NMWGAIAETVRGDNISAPFVENWGQINPEQVLVSKPDVIMISGTELGNDTNPEIMSMG
                     INIEEADAQKRLKGFIERTGWKELPAVKSGRVYGLYHTASRSISDLASAQFMAKALYP
                     ELFKDIDPEKTYLDFHNNYLPITPKGTFFMQLK"
     gene            complement(19183..>19908)
                     /locus_tag="PXE92_000943"
     CDS             complement(19183..>19908)
                     /locus_tag="PXE92_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5760208.1"
                     /translation="LVVADKINLHFEQGKIYTLLGPNGAGKSSLLKTLFGEIAHQGTI
                     DFDGNKLTSSHLHSWRKEIGYMPQDTQVEASLSALEVILLGQLDSLNMYISDELLNEA
                     VDIMDKLGISHLAHQDIMRLSGGQRQMVMFAQVLLRKPHILLLDEPVSALDMYHQINL
                     LEYVNAYTRANNLITIMVLHDLSLAAQFSDSVMLLSEGKFKHKAELVICWNAILFRDS
                     IMSILRFYMMETARRLSARFANV"
BASE COUNT         5938 a         3835 c         4317 g         5818 t
ORIGIN      
        1 atttgttatg ctttgtaaat aagaggaaag agatccattt tgggtagaaa atagctcatt
       61 gcttggaact ttaaatggtt atttcaccaa ttcaaccact tccttcgtca atttcccaat
      121 ctcctcccac ttctgttcct taatcaggga tttctccaca aaccaagagc cgccgcaggc
      181 gactacgttg ggaatggcga ggtagtcgtt gatgttttgt ggcgagatgc cgccggtcgg
      241 cataatctgt aagttgccgt aagggccgag cagggcttta atcattttca cgccgccact
      301 ggcttcggca gggaaaaatt taactgcttg tatgccaagt tcgagggcgg cttcaatcgc
      361 catcgggttg ttcacacccg gtgtaacagg caaacctaac acttggcaat acttaacgat
      421 agtcggatta aaacccggag tcacaatgca atccgcccca gcgtttttgg cagttaagac
      481 ttgctctttg gtcagcactg tgcctgctgc aatcaatact tccggatagt tggcttgcac
      541 taatttaatt gcctcttcag ctgcttccga gcggaaagtg atttccacca ccggcaaacc
      601 gttttcggaa agggttttcg ccagcggtaa aatatcttct gctttatcca aagcaatcac
      661 gggaacaact ttcagttgtc ttaatttttc aatgatttgt tcggtggtgt aacgcatttc
      721 tagcctcatt atgttgtatt gcaagcggtc gcttttgtaa aaaattttgc aaatttaacc
      781 gcttgtcgtt gtgctattgt tggtctaaat ggattgttca aactgcgatt tcaaatgagt
      841 agtggcggat ttggcaataa tcgccccttt gtgctgaatg acgataccgg caacggcatt
      901 tccttgttgg caacaggtaa cgacatcttt acccaataag taaccgttaa ggaagccggc
      961 attaaaggaa tcgccggcgg aagtggtatc gaccaccttc tctaccgcaa cagttggcac
     1021 aaaagtacgc tccccgtttt gcaacaccgt tgcccccaga gagccttgtt tcaccacaat
     1081 ggtctgaatg ccatattgag tgagacggtc aaaggtggct tgctcattca catcgcccca
     1141 aagcagttgc tcgtcatcaa aggtcacgag agctaaatcg actaattgca acagctcggc
     1201 atagtgagct tgggcagcag ccacactttc ccacagtttc ggccggtaat tgctgtcaaa
     1261 ggcgattttc accccttgtg ttttgagctc acgcaactgt gcaatcagca aagtgcggtc
     1321 gttttccggc aagatggcaa ggctgatacc gctcaagtaa accatatcta cctcgtttag
     1381 tgccgagagt gctttgggat agccggggtg ttgcaacaaa taacgggcgg cagattgatt
     1441 tcgccaatag aggaacgttc gctcgccctg tttatccaac tgaatcagat acagccccgg
     1501 ctggcggtgc tcgtcacgca acacaaaatc cgtgttgata ttatccacct gccacgccgc
     1561 taacattccc tgactgagct tatccgtgcc gagagcggaa atataacgca cctcaatctg
     1621 ttcaggcgaa ctcacccgag ccaaataggt agcggtgttg agcgaatccc caccataggt
     1681 ttggtgcatc tccccaaacg gctccccgtt taactcaatc atacattcac cgagaatggc
     1741 gagttttttc ataggaatac cttctaagtt acacgccgct ataagcagag aatccgccat
     1801 caacaggtaa tacaacgcca ttgataaagc tggaataatg gtgatccatt aaaaatagga
     1861 ttgcacctac caattcatcg gcttgtccga aacgtcccat aggggtattc gtgaggattt
     1921 tattagctct agctgttggc gtaccatcgg cgttaaatag tagagcttta ttttgattac
     1981 tcactaaaaa tcccggtgca atagcattac agcggatacc tacttttgag aaataaactg
     2041 ctaaccattg tgtaaagtta ctgattgcag attttgctcc agaataggca gggattttag
     2101 ttaatggagt aaaggcattc atactggata tattaatgat attagcgccc tctttaccca
     2161 acatatcttt tgcgaaaacc tgtgttggta atagtgtgcc taagtaattt aaattaaata
     2221 caaattcaat ccctgcttta tctaattcaa aaaaagattt tgtattttcc ggtaagttaa
     2281 tatcgtgaaa ttcattatct gtcgttgctt ttggattatt cccacctgca ccattaatta
     2341 aaatatcaca agtgccaaaa tcttttagaa tttcatctct tgcctgtttt atgctttcta
     2401 attcaagtac attagtttgg tacgctttcg caatatagcc ttcatcggca atttcagaag
     2461 caaaattctg tgctgcttct agattgatat cgagtagtgc aacttttgca cctgtttttg
     2521 caatttcttt tgcaaaataa gcacatagca caccacctgc tccggtaata acaacaactt
     2581 tatctttaaa attatgattt tgggcaatag acataataag aactcctaag ataaccaatt
     2641 cattggtacg ataataattt cagggaaaag tattaataag aacagtattg cagcatagac
     2701 tagcaagaat ggatagatac ctttggttaa tctagcaata ccaatttttg ctataccaga
     2761 accaacatat aataccgttc caacaggagg cgtaattaaa ccgatagata ggttaattac
     2821 catcataata ccaaagtaag caatatcgat gttatacgct cttagtaatg gtaatagtac
     2881 tggtacaaaa attaatactg ctgggattaa gtccattaca cagccgacta ataataagaa
     2941 aatcataatg acgaacatta gtacagtcgg gctatcggta atacctttga taaactcaac
     3001 taactccata ggtatttgag caacagtaac tgcaaatgca gatatcattg ccgccgctgc
     3061 aacaaacata accattgcag ttgttttgat agtgcctaag aaaacatctt ggattttatc
     3121 taaggttaac ccttttaaga taatgctgat tattgctgca taaattgctg ctacaactcc
     3181 cgcttctgtt ggtgtaaaga tgccgcctct taaacctacg ataataataa ttggaagtag
     3241 caatggtaag aatgctgatt taaatgcagc ccaacgttct ttacctgttt ttttcggttc
     3301 aacggtttgt tcttcgtttc ggtataagaa tttccaaact aaccataaac ctaaaaccat
     3361 taaaaagcct ggaaccattc ctcccataaa taatttggta attgatgcac cggctgtaat
     3421 accatagaca atcattggaa tgcttggtgg gataactaca gaaataatac ctgctgcaca
     3481 gattaagcct gttgaacgtg caacatcata ttttcttgca accatcatcg gaataagaat
     3541 tgcaccgaga gccgcggtat cagcaacagc ggagccggat aaacctgcga aaattaagcc
     3601 tgaaataatc actacatagc ccaatccgcc tttaatatgg ccgaccatgc tcattgcaaa
     3661 attgataata cgttcggaaa taccgccgtg tttcataatt tcaccggtca gcataaaaaa
     3721 cgggatagcc atcagcggaa aattatttgt acccattacg aaattctccg tgattaattg
     3781 ggcatcaaac atatccattt tccatagcat aaaactggca ctaagtagca tagagagagc
     3841 aacgggcact cctaaaaaga gaaagaggaa tagacttcct aaaaatagcc ataacatatt
     3901 tatttctcct ctttaatgaa agctagccga atatgtttcc ataaatttgt gaatacaata
     3961 gcgaaatagg agatagatga aataactgct gcaaaatata gaaacgcaga tgaaatttca
     4021 gttgctggca ttttttgtgt gtatgtcaat aacattaact ggtatgcacc gtaagtaata
     4081 aatgacagtg caactaagac taaaatatca gcaaagaaca gtaagtacat ttgtactttt
     4141 gccggtagtg cagaaacaac aatatcaacg gtgaggtgtc ccctttcctt tgcaacgagg
     4201 attattccta gaaagatcat atagacaaag cagattctgg cgaattcctc agaccaagct
     4261 attccggagt caaaaaaata tcgtaaaacc gcattaaaaa agactaggat aatcattgta
     4321 gatagagcaa ttatcgcaag gagtttgaga gttctatcta atgctgtaga aatttgcata
     4381 aatttctcct tcttcattta gatgggcgac ctcttttatc cggtcgcctc gcttattgct
     4441 tatttggctg cgtggatttt tgaaataaca tctttagccc aatcatattt ctgatagaaa
     4501 ttttgataaa gcgtttcgga tgcttttaac atatcagctt taaattgttc actcggaaca
     4561 atgacttctt tgccattttt gtggaagaaa tcttttacat cttgttccat cttcatcgct
     4621 aattcccact ctttttcttg gtagagtttt gctgcctcta agaagattgt ctgatcttct
     4681 ttagacattt tattccaagt tttcaaacta agttgtagta agccaggtga gaaaatatga
     4741 ttagattcaa taatatattt ttgcacctcg tataaaccag aatctttaat taacatatat
     4801 ggattttctt gcccatcaat gactttttgt tctagtgcgg taaatacttc acttaaaggc
     4861 atactttgag ggttaatatg cattgctttt gcccagtcca caaacaacga atttagtgga
     4921 acccttaatc gcaaaccttt aaatccatca aaattctcaa cttttttatt ggaagagata
     4981 acacggaagc cattcatacc atacgctagt aatttaatgc cgtacttctc cattttttcc
     5041 ccgatttctt gagcaatagg agattctaga actttcttag cttcggcatt atctttaaat
     5101 agatatggcc actcccatac gccaaaaatt ggatcaacat tttgtagtaa taaacctgta
     5161 atgccacctt caatcgtgcc attacgcaaa ccatttacaa tttgatcttc tcctcccaac
     5221 tggttatttg ggaaaatacg gatttcgtag cgtccttctg ttttttcttc aatggttttt
     5281 ttgaagtatt cctgcaatgc gatatttgat ggatgaacat ctgaattata gtgaccaatc
     5341 ttaatgatag tcttcgcaaa tgccgaaccg gtgaacatca ggctagaaat taatagagct
     5401 ttagtgaaag ttttgagttt catagttatt acctcgtagg tgagttagta tttaaaatac
     5461 agcgatgatt tttaagtaat catcaggatt agctgagagt tcttcgatat agtgaggtat
     5521 ttcatcaaat gtaattacct tactaatgat atcttttggt tcaattcttc ttgatgccag
     5581 aagctctaat gcttcttcaa atgccccctt gcttgttctt gccccataaa tattaagttc
     5641 tttgaaggtg attaaattag ttggtaatgg tgtttctgtt ttcggccatc cggttaaagc
     5701 aatacgtcca gcaaaagagg tgtatttaag cgtattttgt actgcgacat ttgctcctga
     5761 cgcttcaata accacctctg ccattcttcc attggtaatt gatttaatag cttcaagatc
     5821 gttttctttt gttggattaa ttgtgtgtgg aataccaata gattttgcgt aatccaatcg
     5881 cttatctaaa atgtcaatta aaatcggcgt cgctccataa gctttggcaa ccaatgcagc
     5941 cattagccca attgcccctg ctccaatgat agcaacatgt tcaccagctt tgacttttgt
     6001 tctatgaatt gcgtgtaagg aaatagttaa gggttctgct aacgctaatt cgtgtattgg
     6061 catatcaggt gttttgatta tcatatgggc tggatgtcta acaacctctt gcattgcccc
     6121 atcaatatgt acccccaata cttttagaga ttcgcaacaa tttgttctac caatggagca
     6181 gggatagcaa tgtccacaat agatgtaagg ttcaatgatg acacgatctc ctacattaat
     6241 attatttggc atacctttac cagactcaat tactgtgcca acgatttcat gccctaaaat
     6301 tctaggataa gtaacaagtg gattagtgcc tctaaatgct ccaatatcag agccacatat
     6361 ccccatacct tctactttga ttagcacatc attttcacct ttaacaggat aagaaacggt
     6421 ttgtatacca actttattag gttctacaag acatactgat ttgagtggtt tttccatgat
     6481 tttgtccttt tttgataaag ttaatcgaca ttttgtagtg tcaatggtat tttatgcaca
     6541 gatactaaca ccaaaaaaca agtttggcat tccaattttt gtgattttgt gaacctgatc
     6601 acaaaaatga aattttggaa ttccaatttc gtgaggattt atgcaaaata gttccagaac
     6661 ttacactaaa ataggaaaaa ttctcaaaga ggaaattgct caaggaaaat acagagtagg
     6721 agataagtta cctactgaga gagatatttc tgaaagattt gaagtgagta gaactatcgt
     6781 aagggaggcg atagtgatgc tagaagtaga aaagcttatt gaggtaaaaa aaggatcggg
     6841 cgtgtatgtc attagagtcc cggagctttt tccagaagat tttccagaag agaaagataa
     6901 tgagctaagg gatgttgggc catttgaact acttcaagca cgacaattat tagaaagcag
     6961 tattgctgag tttgcagcac agcaggctac caaacaagat atacaagtac ttcgtaacat
     7021 attagaaagt gagaagaaac ttttgttaga gaagatggat gactacagtg cagataagga
     7081 atttcatctt gcattagctc atatgacggg taacgatgtt ctgattcaat tacaagaaca
     7141 gctttggcga taccgcttta atagtgcgat gtgggctcag ctacactcca gaattttaca
     7201 gcatgatcat caccacttgt ggatagagga tcatgagcga attttaaatg caatacagag
     7261 aaaaaatcct gcattagctc gtaaagcaat gtggcaacat ctagaaaatg ttaaaactaa
     7321 attgcttgaa ttgtctgatg tagaggatcc taaatttgat ggatatctat tcaatgtaaa
     7381 ccccgttgta gtaggtatct aaaacctaaa ctacacaatg aggagtttac tatggaacaa
     7441 gcatggcgtt ggtatggacc aaacgatccg gtatctttag atgatgtaag acaagcaggg
     7501 gcaacgggga ttgtgacagc gttgcaccat attcccaacg ggcaggtgtg gtcggttgag
     7561 gaaattaata aacgtaaggc attattagct gaaaaagggc tggtttggtc ggtggtagaa
     7621 agtgtgcctg ttcacgaaga aatcaaaact caaacaggca actatcagca atggattgat
     7681 aactataagc aaaccttgcg taatttggca agctgtggga ttgatacggt gtgctataac
     7741 tttatgccgg tgctagattg gactcgtacc gatctggagt atgaaatgcc tgatggctca
     7801 aaagcattgc gttttgacca agtggcgttt gcggcgtttg agttatatat cttaaaacgc
     7861 ccgggagcgg aagccactta ctcatcagca gaacaagccg aagccaaagc ctattttgag
     7921 cagatgagtg acgctgatat tgcaaaatta accaaaaata tcattgccgg tttgccgggg
     7981 tctgaggaag gctatacgct cgaagaattc caagcacagc ttgaccgcta tcaagggctc
     8041 tcggctgaaa aattccgtac ccatttagcc tatttcttaa atgagattgt gccggttgca
     8101 caagaggtgg gcattcgtat ggcgattcac cctgacgatc cgcctcgccc gattttaggc
     8161 ttgccacgca ttgtttcaac catagaagat atgcaatggt ttgtggaaac tcaaccgctt
     8221 gcagccaatg gcttcacgtt ctgtaccggt tcatacggcg tattagccga gaatgatttg
     8281 gtcaaaatgg cagagcagtt tgcagatcgc atttattttg ctcacttacg agctacccaa
     8341 cgtgaagaaa atccacaaag tttccacgaa gcggatcatc ttgccggtga tgtcgatatg
     8401 tttggcgtgg tgaaagcatt acttaccgaa gagtatcgcc gcaaggcaaa tggcgatcac
     8461 cgattaattc caatgcgtcc ggatcacggc catcaaatgc tcgatgatct gaagaaaaaa
     8521 accaacccag gctattctgc gattggtcgt ttaagaggat tagcggagtt ccgtggattg
     8581 gagttggcac ttaagaaagt ctattttaac gattagcctt atttattata atgccctcta
     8641 ctgtagaggg cattttatag tttgatatgt tcaaaaaata tttcggcgaa ataatccttt
     8701 ttctcgttac ctttattgct gcagcggggt ggtttttctc taaacacgct ttagttggat
     8761 taccgcctat tggctttatg ggagggcgtt ttatattagc ctctttgatt cttctgcctt
     8821 tttcttaccg agagctgtat cgtttagata aggttcaagt taaatattcg gtgattaccg
     8881 gtcttactta cggaatttat actatttttt gggtattggg gctggctttt agtacagtgt
     8941 ttggtgaagg ggcttttttg gtgagccttg cgatgctgat tgctcctttg ctctcttggt
     9001 tgatattcaa acatacgcca ccgaagattt tttggttagc cttacccatt gcattaagtg
     9061 ggctttactt tctttctgcg gagaaaggca tctttcattt ttccttaggc agtacgattt
     9121 ttctggtgtc atcagtgttt ggggcgttat attttgtgtt aaataatcaa tacgccaaac
     9181 aagtctcatt gtttccatta attactatcc aattggcgat agtcggtgcg gtctgtagct
     9241 tgtattccta ttttatggaa agttggcatt tcccgattct caccgaagtg tggctctggt
     9301 ttgccgcaag tgtattgatt gcgacaaatt tacgtttttt aatgcaaaca ctggggcaaa
     9361 aatattgcca tattggtact tctgcactca ttatgttact tgagccggtt tggacattgt
     9421 tattgagcgt gatgttattg ggggaacaac ttagtgcgac aaaatggcta ggttgcagct
     9481 tgattttgat agcattgatt atttatcgac tccctattct acgactcaaa aaataggtaa
     9541 aacaaaagca aatatgccat agtattggaa gcagttaggc attttagagt aagtaacaag
     9601 cggtcatttt tgcaaaaaat cttgcaaaaa tgaccgcttt ctttctttta tccgttcaat
     9661 ctatgttaaa attctacatt tttataagat gagagagaga aacgtggaac agaatttagt
     9721 cgaattttta accaaaacct tagatgattt aaaggcacaa gatattttag ccattgatgt
     9781 gaaagggaaa tctagcatta ctgatacgat gattttagcc accggtacat cgagccgtca
     9841 cgttgcttca acggcagagc gtttaattac ggaagcaaaa caggctgggt tcgaggtatt
     9901 tggagatgaa ggtaaagcag ttgccgattg gatcgtggtc gattttggga aggcaatggt
     9961 tcacttgttg caatccgata gccgtgagat gtaccaatta gagaaacttt gggcgtagca
    10021 gttcaataag gaacgacaag cggtgatttt tgcaacattt tttgcaaatt aaaccgcttg
    10081 taagtgaaag agagatgaaa attcaattaa ttgcggttgg cactaaaatg ccggcgtggg
    10141 taacgacagg gtttgaagag tatcaacgcc gttttccgaa agagatgccg tttgagttgg
    10201 tggaaattcc ggcaggaaaa cggggcaaga atgctgatac taaacgcatt cttgagcttg
    10261 aaggcaaagc aatgttggcg gcagcgggca aggcaaaaat cgtgactttg gatattccgg
    10321 gcaaagcgtg gacaaccgag cagttagcca ctcagttaga gggctggaaa aacgatgggc
    10381 gagatgtagc gttattgatt ggcggcccgg aaggattatc accggaatgc aaagccgctg
    10441 ccgagcagag ttggtcgttg tcgcctttaa ccttacctca cccactggtg cgggtggtgg
    10501 tggcggaaag tttgtatcgg gcgtggtcgg ttaccattaa tcacccttat catcgagagt
    10561 agtgagtcat tttagatagt gttatatgtt tggtaaatta gcaaaattca cagcttcaaa
    10621 ccagcgagaa aaggtgcgag acgggcaggc agaaagcaat ctgtatgccc gccgtgcctt
    10681 agttgcgttt ctgggggtgt tggcgttaag tggtgtttta ttaaccaact tgtatcactt
    10741 gcaagtggtg aattatgagg actaccaaac ccgttcaaac ggtaaccgca ttaaattgtt
    10801 gcctgtgcca ccggctcgag gcttaattta tgaccgtaac ggtaaagtat tggcggaaaa
    10861 tttaacctat ttcgggctgt ttattgtgcc tgaaaagacg gaaaacattg agcagacttt
    10921 aaccgagttg aaggatattg ttgggctgac ggacgaagat atcgagaatt atcataaaga
    10981 gaaaaaacgc agttctcgct ataccccaat tatgctcaaa ggcaatttga atgaggctca
    11041 gatggctcgt tttgcggtga accaataccg ttttccaagt ttagatgtgc aggcgtatta
    11101 taagcggaat tatccttacg gcgagctttt aacccatatt atcggttatg tggcgaaaat
    11161 taacgaaaac gataagaaaa agctgcaaga agccgggaaa ttcggcaatt atgccggttc
    11221 gcacgatatg gggaaattgg ggattgaaaa attctatgaa gatcagctcc acggtgtcac
    11281 cggttttgaa gaggtagaaa ttaataaccg agggaaagta atccgtaaat tgcgtgacca
    11341 agcaggggtt gccggtagca gtattcgctt gagtattgat gtggaattac agcaatatgt
    11401 gatgtcgtta attgctaagc ataaaggggc ggtggtggtg cttgaccctc gtgatagcag
    11461 tattttagcg atggtctcaa acccaagtta tgacaataat ttatttgtgg gcggtatttc
    11521 agggcaggat tataaagcat tattggacga tccaacccga ccactttata gccgtactac
    11581 acaaggcact tatccaccgg cttcaactat taagccattt atggcggtgg caggtttgga
    11641 agagggaatg attacccctt ctaccaccat ttcagacccc ggctattgga ttttgcccgg
    11701 cactacacaa cgttatcgag attggaaacg tagcggacac ggtgcaacta atgtgaataa
    11761 agcaattacc gaatcgtctg ataccttttt ctatcaatta gcctataaaa tggggattga
    11821 taaaatgtcg gattggatga aaaaattcgg tttcggagtg aaaaccggta tcgatatttt
    11881 tgaggaatcc gcaggggtaa tgccaacccg tgaatggaaa caaaaacgct ataaaaaacc
    11941 ttgggtgcag ggcgatacta ttccggttgg gattgggcag ggctactgga tttcgacccc
    12001 gttacagttg gcgaaagcca cggcggtgtt aatcaacaac gggcgggtga atacaccgca
    12061 tttaatgctt gaagtgcaaa gcagtaattc ggttacgccg tatcaagacc cattgttgta
    12121 tgaagatatt aaaggcgtgc cggatgtcta ttggaattta gcaaaacagg gaatgtataa
    12181 cgtaaaccac gccgcaaacg gtacggcacg aaaagtgttt gccggtgcat tttatcattc
    12241 agcagggaaa accggtacgg ctcaggtgtt taacttaaac ggtaaaaatt acgataaaaa
    12301 tgcgattaaa aaagagttgc acgaccacgc ttggtttatc ggctatgctc cttatgaaca
    12361 acctaaaata gtggtggcat taattttaga aaatgcaggc ggtggtggta gtgccgcggc
    12421 tcctgttgct cgtcagatta tggattatgc tttgagaaaa ggcattggtg aacagccgga
    12481 ttcgcaaaat tctgagcaaa ataaaccgct tgtcacagag gaacatcatg aatagtggct
    12541 ttaaaaaact tttctggaaa attttttcac tcgatctcct tttattatca ggattattag
    12601 ctattaccgg ttatggttta ttagtactat atagcgcaag cggtgcaaat gagcggatgt
    12661 ttaccagtag actgattcaa gtttcgctag ggcttgggct aatgttgata atggcaatgg
    12721 tacctcctcg cttttatcaa aaagtttcgc cttatctgta tattttctgt ctgatattat
    12781 tgattttggt ggatttggtc ggcgaaacca gtaaaggagc gcaacgttgg ttgaatttag
    12841 gatttgttcg ctttcagcct tctgagattg ccaagctcgc tgtgccactg atggtagcca
    12901 cttatttagg taagcggccg cttcctccga gttttaaaga tacttttatc gccttagcca
    12961 ttattattgt gccaacctta ttggtggcaa ttcagcccga tttgggaaca tctattttag
    13021 tgtgttctgc cggtattttt gttttatttt tggcagggct aagttggaaa ttaattggcg
    13081 caggtgtggt gtttttagcc ggttttatcc cgataatgtg gtttttctta atgcacgatt
    13141 atcaaaaaac ccgggtgatg accttaattg atcctaataa agacccgttg ggtgccggct
    13201 atcatattat tcaatccaaa attgcgatag gctctggtgg cattaatgga aaaggctgga
    13261 tggaaggaac gcaatcccag cttgaatttt tacctgaacc gcataccgat tttatttttg
    13321 cagtgttaag cgaagagcat ggtatgatag gtgtgctgat tttattagcg atttatttgt
    13381 ttattattgc ccgaggttta gtgattggca caaaatcgga ttctgctttc gggcgtatat
    13441 tatcaggtgg tacagccctt ctattttttg tttacgtttt tgtaaatatt ggtatggtga
    13501 gtggtatttt acccgtagtc ggtgtaccat taccgctttt cagttacggc ggaacctcct
    13561 atgtgacgct gatggcggca tttggtttga tgatgtcaac ctatgttcac cgtaagcgtg
    13621 taggtagtaa taatccttat gataaactga aataaattaa acttttgctt ttttgcggta
    13681 tcaaaaagca gtgaaacgat catcgttaca aacaataacg acatccacat agaggaaaaa
    13741 acttatatga gattaggtaa aattgtaacc ctgttgttag ctggatttct gacatttagt
    13801 tcattaaatt ctttggctgc gacaaagaat acaaaagcta aatcgagtat tttagccaag
    13861 aagcaagcaa cttctaaagc aataaaaaaa gtaggtattt ctaaagttaa gaaaaaagaa
    13921 gtagtggcta aagctacaaa aaagaaaaca atttctactg ttacaactaa gccgattaaa
    13981 tctacaaaaa agctggctcg caaggttgtc aagaaaacgg taaccgctaa gaaaaaattg
    14041 gtaaaaaagc agcataagcc actggtcaaa aaacatttcc agactggtgt tgccagctat
    14101 tatgcaaatt actttaatgg tcgccgaacc gctaatgggg agactttcaa taacgcaaaa
    14161 atgacggctg cacatcgaac tttaccattt ggtactttaa ttgaagtgac gaatttacga
    14221 aatggtcgtt ctgtggtggt gcgtgtaaat gatcgcggac cttatgctca cgcacgggtc
    14281 ttggatttat catcagccgc agcgaaaaaa atcggtatgc accattcggg gacggcaaga
    14341 gtgaaaattg cgattgttga taagtcaaaa ttgggatcga ctaatcagtt ttatgtaatg
    14401 aattaattta agagggaata tgaaaaaaac attagtgaaa gcgatgagcg tggtaggttt
    14461 tgcggtttca agcattgcct atgcggattt aaacactaac ttcaatttat cggcacccca
    14521 gatcaacgca caaacctata ttttgatgga ttacaactcc ggtgaagttt tagtgagcct
    14581 aaatccggat caacgtcaat atcctgcatc attgaccaaa atgatgacta gctacgtagt
    14641 tggtgaagcc ctaaaatcgg gaaaagtgca aaacagtgat atggtgatag tcaccgaaaa
    14701 ttcgtgggcg caaaaattcc ccggctcttc attaatgttt ttagatttaa acagcaaagt
    14761 ttcagtaggt gagttgatga aagggctgat tatcgtctcg ggtaatgatg cctctgtggc
    14821 gcttgctgaa catgtttcag gctcacaagc ggcgttcatt aatgaaatga acaaatatgc
    14881 ccaacagttt ggcttaaaga atactcactt taccactgtt cacggtttag atgaccctga
    14941 gcaatattct tctgctcgtg atatggcgat tattggttcg catattattc gtgatcagcc
    15001 ggaagagtat aaaatttatg cggaaaaaga gttccaatat aacatcaaaa aaccacaacc
    15061 aaaccgcaac ggattattgt gggataaaac cattcaagtt gatggtatga aaacagggca
    15121 tactgataaa gccggctata acttagtcgc atcagcaatt aacccgaata cacgtttaat
    15181 ttctgtagtg atgggcgtgc caacttataa agggcgtgaa gtggaaagta agaaattact
    15241 gcaatggggc tttgcgaact ttgaaaccat taaatctatt ccggcagctc aatcggtggc
    15301 agagcaaagt gtctattacg gtgaagtcaa taaagtacaa ttaggctcgg tgcaagatag
    15361 ctttgtgact atcccgaaag gtcgctcggc agatttaaaa gcccgttatg agttagagaa
    15421 gaaaaacctc gaagctcctt tagcaaaagg gcaggtagtg ggtaaaatga tctaccaact
    15481 tgacggcaaa gatgttgcaa gcactaactt acaagtctta caagatgtac cggaagccgg
    15541 tattttcggc aaagcgtggg attggattgc ccttactgtg aagagcttgt tcgattaatc
    15601 ttgttatttg cctttttatc cccatctagg gagcaatgca agcggtgtga ttttgcaaaa
    15661 aatttgcaaa atttcaccgc ttaccgtttt agatatgaat gtataaaaag tgtagtggcg
    15721 aaaaattttt cgcccctcga agaaagaata gaagaaggat caaaaatgtc tcaacccaaa
    15781 gcgataaact tacaagattt acctcaagcc aaattaaaag atctgctaga gtttccgtgc
    15841 catttcacgt tcaaagtggt gggagcaaac cgagaagatt tggttgatga tgtggtagtg
    15901 gtcacgcaaa aatatgccaa aggcgattac aatccacgtc agcaaaaaag ctcaaaaggt
    15961 acctataatt ccgtttcgat tgatattgtg gcggaaaata ttgagcaagt agaaactctc
    16021 tacacggaac ttgccaaaat taatggcgta agaatggtat tataatgcga ggggcgaatg
    16081 acattcgccc tcaatttttc aataaagcga tgttggaaaa tagaaaatga aattaataat
    16141 tcgccaacta ggcattcagc cttatgaaga aatttggcac caaatgcaat ctttcacaga
    16201 tagccgtgat gggaataccg atgatgagat ctggctggtt cagcacccgg ctgtgtttac
    16261 gcaaggatcg gcaggcaaac cggagcattt gttaaatcca accaatattc cggtggtgca
    16321 aagcgaccgt ggcggtcaaa ttacttacca cggcgagggg cagcaaatta tgtatgtgct
    16381 gattgatatc aaacggctga aatccttggg taaagaagtg tcggttcgag atttagtgac
    16441 tgccctggag caaaccgtgg tacaaacgtt ggcagaatat ggcatagaaa gttatccaaa
    16501 agccgatgca cccggggtgt atgtggacgg caagaaaatc tgctcacttg gtttacgaat
    16561 tcgaaaaggt tgctctttcc acggtttggc attaaatatc aatatggact taacgccttt
    16621 tcaaaacatc aatccgtgcg gttatgcagg gctggaaatg tgccaattaa gtgaactggt
    16681 tcatcgccct gatttgcgtt gcgaagaggt tgctccaaaa ttagtggctc atttcagcac
    16741 aattttaggc tataataacc aacaaattat taacaattag gataaaacac agtaatggct
    16801 acatcgacag ctcaaacgac ggcaactgct acagtgaaaa aaatgagccc tttcaaaatg
    16861 gaaaaagggg tgaaatatcg tgatgccgcc aaaacctctg tgattcaggt gcgtaatatc
    16921 gacccggatc aagaactctt aaaaaaaccg gagtggatga aaatcaaact gccggcaaat
    16981 tcggcaaaaa ttgatagcat taaaaacggt atgcgtcgcc acggcttgca ctcggtgtgc
    17041 gaggaagcct cttgcccgaa tttacacgaa tgttttaacc acggtactgc aacctttatg
    17101 attatggggg caatctgtac ccgtcgttgc ccgttctgtg atgtggcaca cggcaaaccg
    17161 cttccgcttg acccggacga acctcgcaaa gtggcagaaa cggtgcaaga tatgaaactc
    17221 aaatatgtgg tgattacctc agtggatcgt gatgatttgc ccgaccgtgg tgcggctcat
    17281 ttctctgcga ccgtgcgtga aatcaaagcc ttaaatccgc attgtaaggt tgaaatttta
    17341 gtgcctgatt tccgtggacg tgtggagcaa gcggtggcaa ttctcaaaga aaatccacct
    17401 gatgtcttta accacaacct agaaaatgtg ccacgtctct atcgtgaagt tcgtccggga
    17461 gcggattaca aatggtcgtt ggaattattg aaaatcttca agcaagagtt cccgcatatt
    17521 ccgaccaaat ccggcttaat ggtaggctta ggtgaaacca acgaagaaat cttggaagta
    17581 atgcaagatt tacgagacca cggcgtgacg atgctcacca tcgggcaata cttacaacca
    17641 agccgccacc acttaaaagt ggaacgttat gtgccaccgg cagagtttga tatgttccgt
    17701 gaggaagctg aaaaaatggg ctttgaacac gcagcctgcg gaccgttcgt gcgttcttct
    17761 taccacgcgg atttacaagc gaaaggcgaa ttggtgaaat aaaatcgata agggcgaata
    17821 ttatttgccc tttgtttttg tggtttgcaa agttttagca aaattaaacc gcttgtaatc
    17881 tcttctaatt tactcttcta tagataattt cgttgttgcg aattattttc attgactatt
    17941 tgttatagaa agttacaatt caactttcca tttctttttg gagttccaat gaaaaaatta
    18001 ctattaaaca gcgtatttgc tgccacattg cttgcttttg gtgcaactgc caatgccgaa
    18061 attaaaacca tcactgatgt attagggcgt gaggtcaaag ttgatgtgcc tgctaaacgt
    18121 gttgcactga ctttctatta ccctgactat attgcggtaa ccggtgttga aaatttcgat
    18181 aaggtagtag ggatttcacg agagttttgg gaaaagttca acccaggcag ttgggcatta
    18241 tttgcagaaa aaatgccaaa tctaaaaaac attgccgatc ttggctatgt gaatagtggt
    18301 actttttcaa cagaaaaaac catcgcatta aaaccagatg tgttagtgct acctgaaatt
    18361 caatatcaag cgttagccag tgaaatttca cgcattgagc aagctggcat tcctgttgta
    18421 gtagatttca acaagcaaac tattgaaaac catacaaaaa gcgtgagagt tttcggtcag
    18481 cttacaggca ctgaagagag agcggagaaa attgccaaag agtatgaaga gggcattgct
    18541 gatattcaga gctgtattga taatgcaaaa gtaagtaagc cgaaaatcta tgctgaattt
    18601 ggtaataaag gcccgaaaga gcatagtttt acctttggta aaaatatgtg gggagcgatt
    18661 gccgaaacgg tgcgaggcga taacattagt gccccgtttg tagaaaactg ggggcagatt
    18721 aaccctgagc aggtgttagt ttctaaacct gatgtgatta tgatttcagg tacggaacta
    18781 ggcaacgaca ctaaccctga gattatgtcg atggggatta atattgaaga agccgatgct
    18841 caaaaacgct taaaaggctt tattgagcgt acaggttgga aagagttacc tgcggtaaaa
    18901 tcagggcgtg tttatggttt atatcataca gcttctcgct caatttcaga tttagcgagt
    18961 gctcaattta tggcaaaagc actttatcct gaattgttta aagatatcga tcctgaaaaa
    19021 acgtatttgg atttccacaa caactactta ccaattacgc caaaaggcac attctttatg
    19081 caactgaaat aaaaataaca agcggtcatt ttgcagattt attttgcaaa atgaccgctt
    19141 gtattcgctt ttactatttg cggttcaaac agcaatcaat atttaaacat ttgcgaagcg
    19201 ggcggataat cggcgagccg tttccatcat ataaaatctc aatattgaca ttatagagtc
    19261 tctgaataat atcgcattcc aacatatcac aagctctgcc ttgtgcttga atttcccctc
    19321 gcttaatagc atcacactat ccgaaaattg agccgcaagg cttaaatcgt gcagcaccat
    19381 aattgtaatt aggttattcg ctcgagtgta ggcattcaca tattcaagta agttgatttg
    19441 atgatacata tccaacgcac tgacaggctc atctagcagc agaatgtgtg gtttacgtag
    19501 caatacttgt gcgaacatta ccatttgccg ttgcccgcca cttagccgca taatatcttg
    19561 atgagctaga tgtgaaatac cgagtttatc cataatatca acggcttcat tgagtaattc
    19621 atcgctaata tacatattca ggctatcaag ttgccctaat aaaataacct ctaaggcact
    19681 gagtgaggcc tctacctgtg tgtcttgtgg catatagcca atttctttac gccaactatg
    19741 caagtggctt gaggttaatt tattaccgtc aaaatcaatt gtgccttgat gagcaatttc
    19801 cccaaataga gttttaagga gagaagattt acccgcacca tttgggccaa gtaaagtata
    19861 gatcttgcct tgttcaaaat gtagattgat tttatcagcc accactaa
//
LOCUS       DANMBQ010000029        19797 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.029, whole genome shotgun sequence.
ACCESSION   DANMBQ010000029 DANMBQ010000000
VERSION     DANMBQ010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19797
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.029"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..287)
                     /locus_tag="PXE92_000944"
     CDS             complement(<1..287)
                     /locus_tag="PXE92_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL5760209.1"
                     /translation="MSIKKVTLASLILLGLTACSSGGSGSSSNNVAKPNTKPQTTQQQ
                     TDKAAAEKAAKDKAAKEKAEAERLAAEKAAKEKAEAERLAAEKAAKEKAEA"
     gene            490..1944
                     /locus_tag="PXE92_000945"
     CDS             490..1944
                     /locus_tag="PXE92_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-histidine dipeptidase"
                     /protein_id="HDL5760210.1"
                     /translation="MSEISTLAPQLLWQWFDKACAIPHPSYHENELAEFIVNWAKSKN
                     FFVERDEVGNVLIRKPATKGMENRQTVALQAHLDMVPQANTGTVHDFTKDPIQPYIDG
                     EWVKAKGTTLGADNGIGLASCLAVLDSDDLAHPTIEVLLTMTEEAGMEGAIGLRPNWL
                     TADIMINTDTEENGEIYIGCAGGENVNVTLPIFLVPHQQDSAVTVTLKGLNGGHSGCD
                     IHTTRANAIKVFARILEQAHNEVEFQIAEIQGGSVRNAIPREAHATLVFSAKNQQKLT
                     ACLSQTAEQVKAELKIAEPNFQFLIEEAQLPEQAFDLASTARVIHFLNVMPNGVVRNS
                     DVVENVVETSLSIGVLNTEASEVKATILARSLIEGGKEEIRSKIRSLTALVGAEVEFS
                     GNYPGWEPNPNSKITPLTKAIYDEILGYESQIKVIHAGLECGLINKIYPNMDFVSIGP
                     TILNAHSPDEKVHIPAVEIYWKLLTKLLEQAPEK"
     gene            complement(2019..3308)
                     /locus_tag="PXE92_000946"
     CDS             complement(2019..3308)
                     /locus_tag="PXE92_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5760211.1"
                     /translation="MDIRQKIAHNKMTSFQWLVVGLTVLLNMLDGFDLMALAFTAKSI
                     REELQLDGAAIGSLMSAGLFGMAIGSLFLSPLADKFGRRPLLLIGTGLATLGMLLTYF
                     ATSAFEIGVWRVLTGLGVAAILTGTNVLVSEYSSQKWRGLAIAIYASGFGIGAMLGGM
                     SAVLLQGEYGWRAVFLVGSILTGAVFVLLFFVLPESVEFLISKHPVNAKARLNQIAVK
                     LGLGNGWELPEIEAKSKSKVAITRLFEPEYRRNTLLIWLAFIAISASFYFISSWTPAL
                     LEEAGMPKTQSQTVGMAISVGGTIGSLIFGFLVSRWAAKHILQAFSILAASAVVAFVF
                     AGNLGLAITLAILVGGLINGCITGLYTINPTLYAPDFRSTGVGTAIGVGRLGSIVSPT
                     LAGILLDAGWKKNELYLGAAVVLLIAAFTVHFLKQRK"
     gene            complement(3512..3847)
                     /locus_tag="PXE92_000947"
     CDS             complement(3512..3847)
                     /locus_tag="PXE92_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HDL5760212.1"
                     /translation="MVSEQRQNPEEQKSEEQKINVEVLYAYPDKYFLKKLQVPQNATI
                     QTIILLSGVLEKYTEIDLRENKVGIFSRPAKLNETVEEGDRIEIYRPLIADPKEIRRK
                     RAAEQAEKK"
     gene            complement(3837..4271)
                     /locus_tag="PXE92_000948"
     CDS             complement(3837..4271)
                     /locus_tag="PXE92_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HDL5760213.1"
                     /translation="MPIVNQSALVPYSAEQMYQLVNQYEKYPEFLSGCVSTKTLSTGE
                     NELKAELHIQKLGISQTFSTHNKMTPPYKIEMALIEGPFRHLHGAWTFTPFDEQSCKI
                     ALQLNFEFSSPIVAMVFGKVFNELTLKMVNAFKQRAKEVYGV"
     gene            complement(4326..5381)
                     /gene="modC"
                     /locus_tag="PXE92_000949"
     CDS             complement(4326..5381)
                     /gene="modC"
                     /locus_tag="PXE92_000949"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HDL5760214.1"
                     /translation="MLKLKLLQQLGNLTLNVNLDLPNKGITAIFGRSGAGKSSLINLI
                     AGLSTAQAGFIELNGQVLFDSQNGINLPPEKRNIGYVFQEHRLFPHYSVEKNLKYGYK
                     RSDSADFLQIVELLGIAPLLNRYPASLSGGEKQRVAIGRALLSSPNILLMDEPLSALD
                     LPRKQELLDYLDKLSARLEIPILYVSHSLEEVVRLADHLVLLENGKVTAFDTLSAVWH
                     SSAFSAWQPNHQRISLLELPVEETLPHYNMLGLSLNAQRLWVNQLPRHQIGEKLRVTI
                     ASKEVSISLQKPTQSSIRNVLKGNVRKIETHLDRVDLAIQVENQQIWSTISLWSFNEL
                     AIQPEQEVYLQIKSVSL"
     gene            complement(5368..6060)
                     /gene="modB"
                     /locus_tag="PXE92_000950"
     CDS             complement(5368..6060)
                     /gene="modB"
                     /locus_tag="PXE92_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDL5760215.1"
                     /translation="MLNFTPQELNAIVLSLKVASIAVVLALPLAVWVAWLLARKQFWG
                     KNLLNGIMHLPLVLPPVVIGYLLLISMAKRGVIGQYLWEWFHFSLSFSWKGAVLASMV
                     MAFPLMVRSIRLAFEAVDPKLEQAARTLGAIPLKVFFTLTLPLSFSGIIAGGVLGFAR
                     SLGEFGATITFVSNIPNQTQTIPAALFTFIETPDGEMAAARLCLVAILISLIALFCSE
                     WLAERQKRYAQT"
     gene            complement(6244..6999)
                     /gene="modA"
                     /locus_tag="PXE92_000951"
     CDS             complement(6244..6999)
                     /gene="modA"
                     /locus_tag="PXE92_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5760216.1"
                     /translation="MKALKKLAITMALTLSGTAFSQEITVFAAASMTNVLQDIQQDFE
                     KAYPQDKITFSFASSSVLAKQIEQDAPADIFISADQKWMDYVAEKQPEKVKHRRNLVR
                     NELVLIAPTESNIEPKAIQAVDFAKELANSYLSVGDPNHVPAGKYAKKALSHYQLWES
                     VEPRLARAKNVRDALSFVERGESPLGIVYSTDAKVSNKVKVVAVFPPESYGEIVYPAA
                     AVSEKASAATFLDFLKTPKAKAKFEAAGFYPVN"
     gene            complement(7020..7781)
                     /locus_tag="PXE92_000952"
     CDS             complement(7020..7781)
                     /locus_tag="PXE92_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5760217.1"
                     /translation="MNLIGFYTLAYKECRRILRIWRQTLVPPVITTTLYFLIFGTLIG
                     GRIGEMNGVGYTQFIAPGLIMMTAITASYVNTASSFFLSKFTRDFEEMLISPLSTHNI
                     IWGYVTGSILRAGLAATLVMCVAMVFVSFEIYSVAIIVLTLLLTIIAFALGGVINAVF
                     ARSFDDVGLIPTFVLTPLTYLGGVFYSISLLPEFWQTVSKFNPIVYMINGLRYGFLGI
                     SDVPLGYTFAVLTSLCIGLYIIAYSLIQRGVGLRS"
     gene            complement(7783..8691)
                     /locus_tag="PXE92_000953"
     CDS             complement(7783..8691)
                     /locus_tag="PXE92_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5760218.1"
                     /translation="MKALELIDLVKTYPTGVKAVKGINLVVEQGDFYALLGHNGAGKS
                     TTIGIISSLVNKTSGSVKVFGYDLDTQKVELKHQIGLVPQEFNFNQFEKVIDVLVQQA
                     GFYGIPRSEALVRAEKWLKLLDLWEKRTHLTRELSGGMKRRVMIARALMHNPKLLILD
                     EPTAGVDIELRRSLWDFLRDLNNQGTTIILTTHYLEEAETLCRHIGIIQHGELIENTS
                     MKALLAKLESEVFVLDLQNSEQNQPLVIQNYPHKWLDENTLEVNVKRQQGLTNLFSQI
                     SAQGAEVLSMRNKSNRLEELFINMAQ"
     gene            complement(8697..10754)
                     /gene="dnaX"
                     /locus_tag="PXE92_000954"
     CDS             complement(8697..10754)
                     /gene="dnaX"
                     /locus_tag="PXE92_000954"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDL5760219.1"
                     /translation="MSYQVLARKWRPQRFSEVVGQQHVLSALENSLREDRLHHAYLFS
                     GTRGVGKTSIARLFAKGLNCVNGITAEPCGECANCKAIEEGHFIDLIEIDAASRTKVE
                     DTRELLDNVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQ
                     KLPITILSRCMQFHLRALEQSQIARHLEFILNAENIPFEPLALEKLAKAAQGSIRDSL
                     SLTDQAIAMSNANITLAIVSQMLGLIDDNQPLELVQATAQADGEKAMAIIEQIAAKGV
                     DWQQLLSDVAEVLHKIAMLQLVKTPTTEETLVHFLAKQIPPEDVQFFYQLILNSKKEL
                     PFAPEQRAGVEMAILRALAFHPKQAEKIATVAVEKVTQPNHSVSAVTTAKPQNQISQL
                     RENFEQNQQKTVTVANTTTAVESIAQPPQAVDTAISPSAPATLSPAMAALEARKKLQA
                     QQANLAQTEKKKPELKAPQVIAKKSANQTASLQERFISLAENQHKAVLQVSKKTESAP
                     KSVEDEDYRWTWLNPELENQADSAKPSDIKQAILQERTPELVAKTIHLSCQQDKWCDI
                     ANSLNLGGFSRQIALNSYLAEQNEQHLALVLKPNMAHLDNPESRKNLEAALAEKGYSY
                     ELTIGDNSEQQTPLEIRRAIFKQLTEAAKSALLNDEKLMLLRNAFDAQIDESTIRAVA
                     ETE"
     gene            complement(10845..11384)
                     /gene="apt"
                     /locus_tag="PXE92_000955"
     CDS             complement(10845..11384)
                     /gene="apt"
                     /locus_tag="PXE92_000955"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDL5760220.1"
                     /translation="MNQLDLIKSSIKSIPDYPKAGIIFRDITSLLEVPTAFQATIDAI
                     VAEFKDKGITKIVGTESRGFIFGAPVALALGVPFVLVRKPKKLPREVISQSYTLEYGE
                     DTLEIHKDAVSANDNVLVIDDLLATGGTIDATAKLIRRLGGNVEHAAFVIWLPELGGK
                     ERLEKEGVKSFSLVSFEGH"
     gene            complement(11512..12462)
                     /gene="lpxM"
                     /locus_tag="PXE92_000956"
                     /gene_synonym="msbB"
     CDS             complement(11512..12462)
                     /gene="lpxM"
                     /locus_tag="PXE92_000956"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249087.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HDL5760221.1"
                     /translation="MTRITAQDGYTHKFLWSFLHPKYWGVWLGVLGLVILAYVPVRIR
                     DKLSAFVGKMAYRYLKQKNKKGYHRAKVNLRYCFPDWSEKKREEVVEKMFITVAQTML
                     AIGETAIRPASYLQKRCEFTGFENVVKAKESGKNVIMLVPHTWSIDMAGVAMFSLGYP
                     MTSMYNPHRNALVDWLWNITRERLGGRMHTRQNGIKAFLADVRKGDVGYFLPDEDFGE
                     ELSVYADFFATEKATLPGLNKMARVANAEVIPMFSIYNAEKAKYEMEILPPLEFSGDP
                     IQSAREMNRVIEYFVEKNPEQYVWILRLLKTRRNREDIYL"
     gene            complement(12903..13586)
                     /locus_tag="PXE92_000957"
     CDS             complement(12903..13586)
                     /locus_tag="PXE92_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit E"
                     /protein_id="HDL5760222.1"
                     /translation="MEREQQIPVTNIDVAPKQSSVWKTIFADGVWKNNGALVQLLGLC
                     PLLAVSNSVTNALGLGLATMFVLICTNITVSLFRKITPHDIRIPIYVMVIATVVTAVQ
                     LLMNAFAFPVYQSLGIFIPLIVTNCIVIGRAEAYASKNEVKFSAFDGFSMGLGMTFSL
                     VVLGALREIIGNGTLFSGLDLLLGDWAKALRIDVLHIDSGLLLAILPPGAFIGLGVIL
                     AVKNIIDKR"
     gene            complement(13595..14227)
                     /gene="rsxG"
                     /locus_tag="PXE92_000958"
     CDS             complement(13595..14227)
                     /gene="rsxG"
                     /locus_tag="PXE92_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HDL5760223.1"
                     /translation="MNTSKITLNYALILGFIALLCTAVSTGVYLLTKGKIDDVTAMQQ
                     RKLLEEVVPKSHFDNDVLATCKLVQLENAPYLNRIYVAKKSENLTAYLVQGTAPDGYS
                     GDIVLLMGIEPNGNILGVRTLEHKETPGLGDKIETRVSDWILSFTNQLFSLENEADWN
                     VKKDGGKFDQFTGATITPRAVVNHIRQSAKWVVTELAQNPTMFNQFKACK"
     gene            complement(14227..15282)
                     /gene="rsxD"
                     /locus_tag="PXE92_000959"
     CDS             complement(14227..15282)
                     /gene="rsxD"
                     /locus_tag="PXE92_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HDL5760224.1"
                     /translation="MFKMVSSPHTHSSNLTANFMLWVIAMMLPAFGVQLYYFGYGVLI
                     QTLLAVSLAIVIEIGIAKLRKKTTAFYLADLSGILTALILAMSIPPYAPYWLVLIGVI
                     VALLLAKHSYGGLGQNLFNPAMVGYALLLVSFPVQMTAWIVPIELLSEPPTFRDAISL
                     IFYGVTSDGFSIHQLVNSVDGIAQATPLDSMKSSLAKSGFDAVMNTPIFNGLFATGWL
                     QLNLAFLFGGLVLIYKRIIHWQIPVAMLATFAFFSGFTELFSQQSHLHFVSHFFSGAM
                     MFGAFFIATDPVTASITPRGKLIFGGLVGLLVYLIRYYGNYPDAIAFSVLLANICVPL
                     IDHYTQPRLYGTKLDNR"
     gene            complement(15328..15963)
                     /locus_tag="PXE92_000960"
     CDS             complement(15328..15963)
                     /locus_tag="PXE92_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HDL5760225.1"
                     /translation="MFSELIPALPWSFLFIQDLIGTIVFAISGAIAARQHKMDIFGMF
                     ILAFVTGVGGGTLRDMMIGSTPVFWMKQPIYVLMITLAVVITAIFRNQISRKSWQTGL
                     LVFDAIGLGVFTVIGVQKGLDFGLHPLICVALGGVTGCFGGLIRDILRNEVPIILQKE
                     VYVTASLIGGVIFVAANSVGLESDWVYLATVFTVIIIRLLAIRFNLNLPRL"
     gene            complement(15956..18250)
                     /gene="rsxC"
                     /locus_tag="PXE92_000961"
     CDS             complement(15956..18250)
                     /gene="rsxC"
                     /locus_tag="PXE92_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HDL5760226.1"
                     /translation="MSNPNLVIERIRQNKETGKLWDFPGGIHPMENKSQSNSKPIRTL
                     NLPKFFYVPLVQHSGWAGELLVKVGDVVLKGQPLTKGDHFRQLPVHSPTSGRVIGIEP
                     YVSAHASGLPEITVIIETDGKDKWVERQPIEDFLSLTSDQIIQKVYQYGIAGLGGAVF
                     PTATKLSLADKRCKLLVINGAECEPYITCDDRLMQDFTADLIEGIRILRYVLRPEEVV
                     IAIEDNKPHAIQALETALKGSNDMFVRAIPTKYPSGASDQLIQVLTGLEIPAGKRTIE
                     MGIVMHNVGTAFAVKRAIIDDEPLIERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD
                     YQADKRFPVFLGGPMMGFILPALQAPITKTANCLIAPDHFEYAPPEPERSCIRCSSCS
                     DACPVGLLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCPSYIPLIQYFRQEKAK
                     IEEIEEKARKAEEAKIRFEAREARLQKERDARTARISQAAEKRREEVANAGGVDPVKA
                     ALERLKAKKAVETVQEIPAEVQVKPNGEPDNSDLMAQRRARRLAKQAEQAVEKSENVT
                     NALIGANNDLPLQSMNETASDKSVGANNYSPEAESEDPRKAAVAAALARAKAKKQAQQ
                     AVEKSENITNAVIGVNNDLPLQSMNETVSDKSVGANNHSPETESEDPRKAAVAAAIAR
                     AKAKKQAQQAVEKPEDIANAVIGVNNDLPLQSMNETTSDKSVGANNHSPKTESEDPRK
                     AAVAAAIARAKAKKAAQQEKSNNV"
     gene            complement(18237..18854)
                     /gene="rsxB"
                     /locus_tag="PXE92_000962"
     CDS             complement(18237..18854)
                     /gene="rsxB"
                     /locus_tag="PXE92_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HDL5760227.1"
                     /translation="MLDLPIIAYILIAIAVIALIFGAVLGYSSIKLKVESDPIVDQID
                     ALLPQSQCGQCGYPGCKPYAEAIANGDVITKCVPGGQPLVVNLAELLGVEVPPMEGMA
                     EPEMKVAFVIEDLCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNC
                     IEMRPIKPTTQSWNWKFDQDLIIPIVNTTELQRKLVTGGGKNEQS"
     gene            complement(18854..19435)
                     /gene="rsxA"
                     /locus_tag="PXE92_000963"
     CDS             complement(18854..19435)
                     /gene="rsxA"
                     /locus_tag="PXE92_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HDL5760228.1"
                     /translation="MVDYILLVISTALINNFVLVKFLGLCPFMGVSKKVETAIGMGLA
                     TTFVLTVASLSAYLMETYLLEPLNAQFLRTLVFILVIAVIVQLTEMIVHKTSPTLYRL
                     LGIYLPLITTNCAVLGVALLNVNLANNLVESVLYGFGAAAGFSLVLVLFAALRERLAA
                     ADVPRPFQGASIALITAGLMSLAFMGFTGLVKL"
BASE COUNT         5631 a         4503 c         4137 g         5526 t
ORIGIN      
        1 tccgcttcgg ctttttcttt cgctgctttt tccgccgcta aacgttctgc ttccgctttc
       61 tctttagctg ctttttctgc tgctaaacgt tctgcttctg ctttctcttt cgctgccttg
      121 tcttttgctg ctttttctgc tgccgcttta tcggtttgtt gctgagtagt ttgcggttta
      181 gtattcggtt ttgccacatt gtttgagcta ctgcccgaac caccactact acacgccgtt
      241 aaacccaata aaatcaaact ggctaaagtt acttttttga tagacataaa atgttccttt
      301 tgtaagataa acaaaaatag atgtgtataa aacacacgca tattgtacaa aaaaaaaaca
      361 actcgtcatc aagtactttt taagattttt ttgttaaatt tctcctaaat attctacaat
      421 gtcagaggtc tatatcagct tgaatacaag cggttatttt ttcttaaaat tttacaaaag
      481 gggcttatta tgtctgaaat ctcaacgctc gcaccgcagc tactttggca gtggtttgat
      541 aaagcctgtg ctattccgca cccgtcttac cacgaaaatg aactggctga atttattgtg
      601 aattgggcaa aatcgaaaaa tttctttgtt gaacgtgatg aagtgggtaa tgtgttaatc
      661 cgtaaaccgg caactaaagg tatggaaaac cgccaaactg tcgctctgca agcccatctt
      721 gatatggtgc cacaagccaa taccggcacg gttcacgatt tcactaaaga tccgattcag
      781 ccttatattg acggcgaatg ggtaaaagcc aaaggcacaa cattgggggc agataacggc
      841 attggattgg cttcgtgctt ggcggtgttg gatagcgatg atttagccca cccaaccatt
      901 gaagtgttgc tcacaatgac cgaagaagcc ggtatggaag gggcgattgg tttacgcccg
      961 aactggctaa ccgccgatat tatgattaac accgacaccg aagaaaacgg ggaaatttac
     1021 atcggctgtg caggtgggga aaatgtgaat gtgacactgc caattttctt ggtgcctcat
     1081 cagcaagata gtgcagtaac cgttacgctt aaaggcctaa acggcgggca ttcgggctgt
     1141 gatattcaca ccacccgagc gaatgcgatt aaagtgttcg cccgcatttt ggaacaagcc
     1201 cacaacgaag tggaattcca aattgcagaa attcaaggcg gttcggtgcg gaatgccatt
     1261 ccacgagaag cccacgcaac cttggttttc tctgcaaaaa atcagcaaaa attaaccgct
     1321 tgtttaagcc aaaccgccga acaagtaaaa gcagaactca aaattgccga gccaaacttc
     1381 caatttttaa ttgaagaagc tcaactgcct gagcaagcct ttgaccttgc cagcactgct
     1441 cgagtaatcc atttcttaaa tgtgatgcca aatggtgtgg tgcgtaatag cgatgtggtg
     1501 gaaaatgtgg tggaaacctc actcagtatt ggtgtgctta acaccgaagc gagtgaggtg
     1561 aaagcgacca ttcttgcccg ctcattaatt gagggcggaa aagaggaaat tcgcagtaaa
     1621 atccgctcat taaccgcatt agtgggagca gaagtggaat tttcgggcaa ctacccgggc
     1681 tgggagccaa acccaaattc caaaatcacg ccattaacca aagcgattta tgatgaaatt
     1741 ttaggttatg aatctcaaat taaagtgatt cacgcagggc tagaatgtgg cttaatcaac
     1801 aaaatctacc cgaatatgga ttttgtctcg attggaccaa ctattctcaa cgcccattct
     1861 ccggacgaaa aagtgcatat tccggcagtg gagatttatt ggaaactcct aaccaaacta
     1921 cttgaacaag cacctgagaa ataaatttaa tcaaaaaaat tatataatct tgccccgtaa
     1981 ttaattgaat aaaacctcaa ttaattacgg ggtagctctt attttctctg ttttaaaaaa
     2041 tgtaccgtga aagcagcaat taataagacg actgctgcac ctaaataaag ctcgttcttt
     2101 ttccagccgg cgtctaataa aatacctgca agagttgggg aaacaattga gcctaaacgc
     2161 cctacaccga tggcggtgcc tacgcccgtg ctgcggaaat ccggtgcgta tagggttggg
     2221 ttaatggtat aaagcccggt aatgcagccg ttaattaatc cgccaaccaa aatggctagt
     2281 gttatcgcaa gccctaaatt gccggcaaac acaaaggcaa ccacagcaga tgcagccaga
     2341 atactgaatg cctgcaaaat atgttttgcc gcccagcgac tgactaaaaa gccgaaaatt
     2401 aacgagccga ttgtaccacc aactgaaatt gccattccca cagtttggct ttgggtttta
     2461 ggcattccgg cttcttctaa tagtgccgga gtccaagagc tgataaagta aaatgaggct
     2521 gaaattgcaa taaaggcaag ccaaattagc aacgtattgc ggcgatattc aggctcgaat
     2581 aaacgggtaa ttgccacttt gcttttactt tttgcctcaa tttcaggaag ttcccagccg
     2641 tttcctaagc ctaatttaac ggcaatttga tttaaacgag ctttagcatt caccgggtgt
     2701 tttgaaatta aaaattccac cgattcgggc aatacaaaga ataataaaac gaataccgca
     2761 ccggttaaaa tcgacccaac gaggaaaacc gcacgccagc catattctcc ttgcaataac
     2821 accgcagaca ttccgcccag cattgcacca atcccaaagc ctgaggcata aattgcaatc
     2881 gctaagccac gccatttttg gctggagtat tcactcacta gcacattagt gccggttaaa
     2941 atggcggcta cgcctaaacc ggttaaaaca cgccatacac caatttcaaa cgcagaagta
     3001 gcgaaataag ttaggagcat tcctaacgtg gctaagcctg tgccgattaa aagcaacggg
     3061 cggcgaccaa atttatcagc aagtggtgaa agaaagagtg agcctatcgc cataccgaat
     3121 aaaccggcac tcattaagct gccgatggct gcaccgtcta actgcaattc ttctcggatg
     3181 cttttggcgg taaaggcgag tgccattaaa tcaaagccgt ccagcatatt aagtaacacc
     3241 gtaagcccaa ccactaacca ttggaatgaa gtcattttgt tatgagcaat tttttgacga
     3301 atatccataa gctccctctg catcaaaatt gataaaattt tatttagagt gaactataga
     3361 aagttgatta aatataatca aactcaaaat ttacataaaa tttatgaaag attttcatat
     3421 ttaatcaaag gagggaattt atagcaggaa tggcgaggga gaaaatagat agggcgaata
     3481 attattcacc cctagattga ataggagaaa gctatttctt ctccgcttgc tcagccgctc
     3541 ttttgcgtct gatttctttc ggatcagcaa ttaacgggcg atagatctca attctgtcgc
     3601 cttcttccac cgtttcattc agttttgccg ggcggctaaa aataccgact ttgttttcac
     3661 gcaagtcaat ttcggtatat ttttccaaca cgccggagag caaaataata gtttgaatgg
     3721 tcgcgttttg cggtacttgc agttttttca gaaaatattt atcagggtaa gcataaagca
     3781 cctcaacatt aattttctgt tcttcacttt tttgttcttc tggattttga cgttgttcag
     3841 acaccataca cctcttttgc acgttgtttg aaagcattta ccatttttaa agttaattcg
     3901 ttgaacacct tgccgaacac cattgctaca attgggctgg aaaattcaaa atttaattgc
     3961 agggcaattt tgcaactttg ctcatcaaag ggggtgaatg tccaagctcc gtgtaaatgg
     4021 cggaaaggcc cttcaattaa tgccatctcg attttatagg gcggcgtcat tttattgtgg
     4081 gtactgaaag tttggctaat gcctaatttc tgaatgtgta actctgcctt taattcattt
     4141 tcgccggtgc taagggtttt ggtactcacg cagccggata aaaattcggg gtatttttca
     4201 tactgattaa caagttgata catttgctcg gcactataag gcacgagggc agattgatta
     4261 acgattggca taatgtctct tttgggaatt aacaagcggt catattttag cgtaaatttg
     4321 caagcctata aagaaacgct tttgatttga agatagacct cttgctccgg ttgaatcgct
     4381 aattcattaa aagaccaaag gctgatcgta ctccaaattt gctgattttc gacttgaatt
     4441 gccagatcaa cccgatctaa atgcgtttct attttccgaa cattgccttt taacacatta
     4501 cgaattgagc tttgagtcgg tttttgtaag ctgattgaaa cctctttgct ggcaatagtt
     4561 acccttagct tctcgcctat ttgatggcgg gggagttggt tcacccataa tcgctgtgcg
     4621 ttcaagctca agccaagcat attatagtgg ggaagtgttt cttccaccgg taattcaagc
     4681 aggctaattc gctgatgatt tggctgccaa gcggaaaatg ccgagctgtg ccaaaccgct
     4741 gaaagggtat caaatgcggt tactttgccg ttttccaaca gcacaagatg atctgccaat
     4801 cgaactactt cctctaaact gtggctgaca tacagaatcg gtatttcaag ccgagcggat
     4861 aatttatcta aatagtccag tagctcttgc ttacgaggga gatcgagggc agataatggt
     4921 tcgtccatca gcaaaatatt cggtgagctt aataacgccc gcccaatcgc cacacgttgt
     4981 ttttcgccac cggaaaggct tgccggatag cgattaagca aaggggcaat gcctaacagt
     5041 tccacaattt gcaaaaaatc cgcagaatcc gaccgcttgt agccatattt taagtttttt
     5101 tccaccgaat aatgagggaa aaggcgatgc tcttgaaaca catagccaat gttgcgtttt
     5161 tcaggtggta aattgatgcc gttttggctg tcaaacagca cctgaccgtt taattcgata
     5221 aagccggctt gagcggttga aagccccgca attaaattaa tcaggctgga tttaccggca
     5281 ccggaacgcc cgaaaatagc ggtgattcct ttattcggca aatcgagatt gacattgagc
     5341 gtcagattgc cgagttgctg aagaagttta agtttgagca tagcgttttt gcctttctgc
     5401 cagccattcc gaacagaaca gggcaatgag tgaaatcaga atcgccacca agcacaaacg
     5461 ggcggcagcc atttcgccat cgggggtttc aataaaggtg aaaagggcgg caggaatggt
     5521 ttgggtttgg ttgggaatgt tggagacaaa ggtgatggtt gccccaaact cccccaaaga
     5581 gcgggcaaaa cccagcacgc caccggcaat aatgcctgaa aaagagagcg gtaaagtgag
     5641 cgtgaaaaac acttttaacg gtattgctcc aagcgttctg gcggcttgct ccaatttagg
     5701 atcaactgcc tcaaaggcta aacggataga acgcaccatt agcggaaacg ccatcaccat
     5761 tgaggcaagc actgctcctt tccacgaaaa actcaagctg aaatgaaacc attcccacaa
     5821 atattgcccg attacccctc gtttcgccat cgaaataagc aataaatagc caatgacaac
     5881 cggcggtaac accagaggga gatgcataat accattgagc agattttttc cccaaaactg
     5941 tttgcgggca agcagccacg ccacccacac ggcaagcggt aatgcaagca ctacagcaat
     6001 ggaggcaact tttaggctta gaacaatcgc attgagttct tgtggggtga aattaagcat
     6061 aatctaaaac tatttggtta taagcttacc ctcgcccctt gtgggagagg gatagatttt
     6121 tcttcgttca gaagaaaaat cagggagagg gggaatattt taaacgctat ttgccctctc
     6181 tctgaaaaat atgtctgaac gacatatttt tctgtctctc tcccacaagg ggagagagta
     6241 aatttaattt acaggataaa acccagctgc ctcaaatttc gcttttgctt tcggggtttt
     6301 gagaaaatct aaaaatgtgg cggcagaggc tttttcactg actgccgcag cagggtaaac
     6361 aatttcgccg tagctttccg gtgggaaaac ggcaaccact ttgactttat tcgacacttt
     6421 agcatcggtg gaatagacaa tcccaagtgg ggattcgcct cgctcgacaa aagagagggc
     6481 atctcgtaca ttttttgccc tcgctaaacg aggttcaaca ctttcccata attggtaatg
     6541 actaagggct tttttggcat atttgccggc aggaacgtgg tttgggtctc ccaccgataa
     6601 atagctgttt gctaattctt tggcaaaatc gaccgcttgt atcgcttttg gctcaatgtt
     6661 actttcggta ggtgcaatta atactaactc gtttctgact aaattgcggc gatgtttaac
     6721 tttctcaggt tgtttttcgg caacataatc catccacttt tggtcggcgg aaataaaaat
     6781 atctgccggt gcatcttgct caatctgctt tgctaatacc gatgatgaag cgaaggagaa
     6841 cgtgatttta tcctgtggat aggctttttc aaaatcctgc tgaatatctt gtaacacatt
     6901 tgtcattgaa gcggcagcaa acacggtaat ctcttgtgaa aaggctgtgc ctgataacgt
     6961 taatgccatt gtaattgcta gtttttttaa tgctttcatt ttcataacct cacaattagt
     7021 taagaacgca gcccaacccc tcgttgaatt aaggaatagg caataatata caagccgatg
     7081 caaagtgaag taagcactgc aaaagtataa cctaacggca catcgctgat accgagaaag
     7141 ccatatctta agccgttaat catataaacg atcgggttga atttagacac cgtttgccaa
     7201 aattcaggca gtaatgaaat agagtaaaat acgccgccta agtaagttaa gggagtaagc
     7261 acaaaggttg gaatcagccc cacatcatca aaggagcggg cgaacaccgc attaattacg
     7321 ccacctaacg caaaggcaat gattgtcagc aacagggtta agacgataat cgcaaccgag
     7381 tagatttcaa acgagacaaa caccattgcc acgcacatta ctaaggttgc ggctaaacct
     7441 gcacgcaaaa tactgccggt gacataaccc caaataatat tatgggtaga gagtggcgaa
     7501 atcagcatct cttcaaaatc tcgggtaaat ttactcaaga aaaatgaaga ggcggtattc
     7561 acataagagg cggtgatggc ggtcatcata attaagccgg gtgcaataaa ttgggtgtaa
     7621 cccacgccat tcatttcccc gattcgccca ccaatcagcg tgccgaagat taaaaaatag
     7681 agcgtggtag taatcaccgg tggcactaaa gtttgtcgcc aaatccgcaa aatgcggcgg
     7741 cactctttgt aagctaaggt ataaaatccg attaaattca ttttactgag ccatattgat
     7801 aaatagttct tccaagcggt ttgatttgtt tcgcatactt agcacctcag ccccttgggc
     7861 ggaaatttgc gaaaacagat tggttagccc ttgctggcgt tttacattca cttcaagggt
     7921 gttttcatca agccatttat gcgggtaatt ttgaatcaca agcggttgat tttgctcaga
     7981 attttgcaaa tctaacacaa atacctcact ttccaatttg gcaagcaagg ctttcattga
     8041 ggtgttttca attaattcgc cgtgttgaat aatgccgatg tgacggcata gggtttccgc
     8101 ctcttctaaa tagtgggtag tgagaataat agttgtgcct tgattgttta gatcccgcaa
     8161 gaaatcccac aatgagcggc ggagttcaat atccacccct gcggtaggtt catctaaaat
     8221 cagtagtttt ggattgtgca ttaaggctcg ggcaatcatc acccgacgtt tcattccacc
     8281 agaaagctca cgggtgaggt gggtgcgttt ttcccatagg tcgagcaatt tcagccactt
     8341 ttcggcacgt actaaggctt cactgcgagg aatgccgtaa aacccggctt gttgcactag
     8401 cacatcaatc actttttcaa actgattgaa attaaactct tgtggcacta agccgatttg
     8461 atgctttaat tcgacttttt gggtgtctaa atcatagcca aacactttca cgctgccgct
     8521 ggttttattt accagtgagc tgataatgcc aatagtagta gatttacctg ccccgttatg
     8581 cccaagtagg gcatagaaat caccttgctc gaccacaaga ttaatgcctt taacggcttt
     8641 tacacctgtt gggtaggttt ttaccaaatc aattaattct aatgctttca tttgttttac
     8701 tcagtttccg ccaccgctcg aatggtcgat tcatcaattt gtgcatcaaa agcgttgcga
     8761 agtaacatta atttttcatc gttaagcaga gctgattttg ctgcctcagt taattgtttg
     8821 aaaatggctc gccgaatttc aagcggagtt tgctgttcgc tattgtcacc aatggtcaat
     8881 tcgtatgaat agcctttttc ggcaagggca gcttctaaat ttttacgtga ttccggatta
     8941 tctaagtgag ccatattcgg ctttaacacc aatgcgaggt gctgttcatt ttgttccgct
     9001 aaatagctat ttaaggcgat ctgacgggaa aatccgccta aattgagtga gttggcgatg
     9061 tcacaccatt tatcctgctg acaagataaa tgaatggttt ttgccactaa ttcaggggtg
     9121 cgttcttgca aaatcgcttg tttaatatca gaaggtttgg cactgtctgc ttgattttct
     9181 aattcaggat tgagccacgt ccagcgataa tcttcatctt ccacactttt aggggcggat
     9241 tcggttttct ttgaaacttg cagtacggct ttgtgctgat tttccgccaa gctgataaac
     9301 cgctcttgca atgaagcggt ctgatttgcc gatttttttg caataacttg aggggctttt
     9361 agctcaggct tttttttttc ggtttgagct aaatttgcct gctgtgcttg tagctttttg
     9421 cgggcttcga gggctgccat tgccggtgaa agagtcgcag gagcagacgg cgaaatagcg
     9481 gtatctactg cctgtggcgg ttgagcaatg ctttcaaccg ctgtggtagt attggcaaca
     9541 gtaaccgttt tttgctgatt ttgctcaaaa ttttctctta gctggctaat ttgattttgt
     9601 ggttttgctg tcgtaaccgc tgaaaccgaa tggtttggtt gtgtaacctt ttccactgca
     9661 actgttgcta ttttttctgc ctgtttaggg tggaaagcca acgcacgcaa aatcgccatt
     9721 tcaacaccgg cacgttgctc cggtgcaaaa ggcaactctt ttttactgtt gaggattaat
     9781 tgatagaaaa attgcacgtc ttcgggcgga atttgttttg ccagaaaatg cactaatgtt
     9841 tcttcggttg taggtgtttt cactaattgc aacattgcaa ttttgtgtaa cacttctgcc
     9901 acatcgctta ataattgttg ccaatcaacg cctttcgctg caatttgctc gatgatcgcc
     9961 attgcttttt caccgtcggc ttgggcggtt gcttgcacta attctagtgg ttgattatcg
    10021 tcaatcaacc ctagcatttg gctgactatc gcaagcgtaa tattggcatt actcattgca
    10081 atggcttgat cggtgaggct gagagagtct cggatactac cttgtgctgc ttttgccaac
    10141 ttttctagtg ccaaaggctc aaacggaatg ttctctgcat ttagaataaa ttcaagatga
    10201 cgggcaattt gcgattgctc taatgcccgc agatgaaatt gcatacagcg agagaggatc
    10261 gtaatcggca gtttttgcgg atcagtggta gccagcaaga atttgacata ttcaggcggc
    10321 tcttcaaggg tttttagtaa ggcgttgaaa ctatgacgag agagcatatg cacttcgtca
    10381 attaaataaa ccttaaaacg cccaacggtg ggtttgtatt gaacgttatc aagtagctca
    10441 cgggtgtctt ccactttagt acgagaagca gcatcaattt caatgagatc gataaaatgc
    10501 ccttcttcaa tcgctttaca attcgcacat tcaccgcaag gctcggcggt gatcccgttt
    10561 acacagttta agcctttggc gaataaacgg gcaatagagg ttttacccac accacgagtg
    10621 cctgaaaaca ggtaagcgtg gtgcagtcta tcttctctta agctgttttc aagagcagat
    10681 aaaacgtgtt gctgaccaac tacttccgag aagcgttgcg gtctccattt acgggctaaa
    10741 acttgataac tcattgattt ttctattcaa tttggaaatc acaagcggtc atctttccga
    10801 aaaattttgc aaaattttag caaaaagcca ccgcttgttc cccattaatg accttcaaag
    10861 ctgactaggc taaaggattt aaccccttct ttttccaaac gctctttacc acctaactca
    10921 ggcagccaaa tcacaaaggc agcgtgttct acgttaccac ctaagcgacg aattagtttt
    10981 gcagttgcat caatagtacc accggttgcg agtaaatcgt cgatgaccaa tacattatca
    11041 ttagcactca ctgcgtcttt atgaatttct agcgtgtctt caccatattc aagcgtgtaa
    11101 gattgcgaaa tcacttcacg tggtaatttt ttcggtttac gaaccaacac aaaaggcacg
    11161 cctaacgcta atgcaacagg ggcaccaaaa ataaacccgc gagattctgt gccgacaatt
    11221 ttagtaatac ctttgtcttt aaattctgca acgatggcat caatggtggc ttggaatgca
    11281 gttggcactt ctaaaagtga agtgatatca cggaagataa tccctgcttt cggataatct
    11341 ggaatggatt tgatagaaga tttaattaaa tctaattggt tcattgtttg acctacgtgt
    11401 aataaaaaaa taactggaaa actctataga aaaacagcag aaatttcaag gagaaattga
    11461 taaccttacg tttgatagta cagcttactt ttcagtttcc ttttccctat attatagata
    11521 aatatcttcc ctgtttcgtc tggttttaag caaacgtaaa atccaaacat actgctcggg
    11581 gtttttctcc acaaaatatt caattactcg gttcatttct cgggcggatt gaattgggtc
    11641 tcctgaaaat tcaagcggtg gcaaaatttc catttcatat tttgcttttt ccgcattata
    11701 aatcgagaac attgggatca cttccgcatt tgccactctt gccattttat ttaagcccgg
    11761 caaagtggct ttttcggtgg caaaaaagtc ggcatacaca cttagctctt cgccgaaatc
    11821 ttcatcgggc agaaaataac caacatcacc tttacgcaca tcggctaaaa acgctttaat
    11881 cccattttga cgagtgtgca ttcgcccacc taaacgctca cgggtaatat tccacagcca
    11941 gtccaccaac gcattacggt gtggattgta cattgatgtc atcggataac cgagcgagaa
    12001 catcgccacc cccgccatat caatcgacca agtatgtggc actaacataa tcacgttttt
    12061 accgctctct ttggctttca ccacattttc aaagccggta aattcacacc gtttttgtaa
    12121 ataagaggcc gggcggattg cagtttcgcc aatcgccaac atggtttgtg ctaccgtgat
    12181 aaacattttc tcgaccactt cttcacgctt tttctcactc caatcgggaa aacagtaacg
    12241 caaattcact ttagcacggt ggtagccttt tttatttttc tgcttgagat agcgatacgc
    12301 catcttaccc acaaaagcgg ataatttatc cctaattcgc accggcacat aggctaaaat
    12361 cactaatcct aatacaccta accatacgcc ccaatatttc gggtgtagaa aagaccatag
    12421 gaatttgtgc gtatagccgt cttgggcggt aattcgtgtc attctataat tcctcattat
    12481 ttgtcacttt ctttgcttcg ccaaagaaag taaccaaaga aaggcaaccc tacttcaccg
    12541 ctatcttcgc ttggtttgaa tttgcttaac gaaaaaattc caaactcgcc gcttcgctgc
    12601 tcaaacaagg aatttttcct acaaattcaa agtcgttcgg gcggttcaga agggaacccg
    12661 gcagagcatc attttgcaaa attttccaaa aaaatcaccg cttgtatggt cggatcgggt
    12721 tcccttctga gttgcccgaa cgacttgaaa tttttaggaa aataactcga gcgagagcga
    12781 agcgaacatc agggttattt ttcgttaaga aaatttcaac caagtgagga tagcaacaaa
    12841 gcagggtgtg ctttcttttg gttacttttc tttgcacaag caaagaaaag tgacataaca
    12901 catcatctct tatcaataat attcttcacc gccaatatca ccccaagtcc aataaaagcc
    12961 cccggaggta aaattgccag tagtaaacct gaatcaatat gcaatacatc aatgcgtagg
    13021 gcttttgccc aatcgccaag gagtagatct aagcctgaaa acagcgtgcc gttgccaata
    13081 atttcacgca acgcgcctag caccacaagg ctaaaagtca ttcccagccc cattgaaaag
    13141 ccgtcaaaag ccgagaattt gacctcattt tttgaggcat aggcttctgc tcgtccaatc
    13201 acgatacagt tggttacaat cagcggaata aaaatcccga gcgattggta aacagggaaa
    13261 gcaaaagcat tcattaaaag ctgtactgcc gttaccaccg ttgcaattac catcacataa
    13321 atcggaatcc gaatatcgtg tggagtgatt ttccgaaaca gggaaaccgt gatattggtg
    13381 caaattagca caaacattgt tgccaagcct agtccaagtg cattggttac gctgtttgaa
    13441 accgccagta gtgggcaaag ccctaataat tgcaccaaag caccattatt tttccacaca
    13501 ccatcagcga aaatcgtttt ccaaacgctg gattgtttcg gggcaacgtc aatattcgtc
    13561 acagggattt gttgttctct ttccatttct ccccctattt gcacgcttta aattgattaa
    13621 acattgtcgg gttttgagcc agctctgtca ccacccattt cgcactttgg cggatatgat
    13681 tgaccaccgc acgaggtgta atagttgcac cggtaaattg gtcgaacttg ccgccatctt
    13741 tttttacatt ccaatccgct tcgttttcta aactaaaaag ttgattggta aaagataaga
    13801 tccaatccga cactcgggtc tcaattttat ctcccagccc cggagtttct ttatgctcaa
    13861 gggtgcgaac gcctaaaatg ttgccgttcg gctcaatccc catcaatagc acaatatcgc
    13921 cggaatagcc gtccggagcc gttccttgaa ctaggtaagc ggtcagattt tccgattttt
    13981 ttgcaacata aatacggttc aaataagggg cattttcgag ctgaaccagt ttgcaagtcg
    14041 ccaacacatc attatcaaaa tggcttttcg gcacaacctc ttccaataat ttgcgttgtt
    14101 gcattgcggt tacatcatca atcttgcctt tggtaagcag gtacacaccg gttgaaacag
    14161 cggtgcaaag caaggcaata aagcctaaaa ttaaggcgta atttaaggta atttttgagg
    14221 tgttcattat ctgttatcca attttgtgcc gtataatctc ggctgcgtat aatggtcgat
    14281 taacggtacg caaatgtttg ccaataacac tgaaaatgca atcgcatcag ggtaatttcc
    14341 gtagtagcgg attagataaa ccaataatcc caccaagcca ccgaaaatca gttttcctct
    14401 tggggtaatg gaggctgtta ccgggtcggt cgcaataaaa aatgccccga acatcatcgc
    14461 accgctaaag aaatggctca caaaatgcaa gtgcgattgt tggctaaaca gctcggtgaa
    14521 tccactaaaa aaggcaaaag ttgccaacat tgctaccgga atttgccaat ggataatccg
    14581 tttataaatc aacaccaaac cgccgaataa gaacgcaagg ttcagttgta gccaaccggt
    14641 cgcaaacagc ccgttgaaaa tcggcgtatt cattaccgcg tcaaaacctg attttgcaag
    14701 gctgcttttc atactatcaa gcggggtagc ttgtgcaatg ccatcaacac tattaactag
    14761 ctgatgaata ctaaaaccat cgctagttac cccgtaaaaa atcaacgaaa tcgcatcacg
    14821 aaatgtcggt ggttcactta ataactcaat cggcactatc cacgccgtca tttgcaccgg
    14881 gaaagaaacc aacaacaacg catagccaac cattgccggg ttaaatagat tctgccccaa
    14941 gccaccataa ctgtgttttg ccaataataa cgccacaatc acgccaatca acacaagcca
    15001 ataaggagca taaggcggaa tcgacatcgc caaaatcaag gcggttaaaa tacctgataa
    15061 gtcagccaaa tagaaagcgg ttgttttttt gcgtaatttt gcaatcccga tttcaatcac
    15121 aatcgcaagg ctaacggcaa gcaacgtttg aatcagcaca ccatagccga aataataaag
    15181 ctgaacccca aaagcaggta acatcatcgc aatcacccac agcataaaat tcgcagtgag
    15241 attgctcgaa tgagtgtggg gggaactgac cattttaaac atctataaaa cctttttagt
    15301 aaaaaattgc aaaaaaatga ccgcttatta aagtctcggc aaattcaaat taaagcgtat
    15361 tgccagcagg cggataataa ttacggtgaa cacggtggca aggtaaaccc aatcgctttc
    15421 gagcccaact gagtttgcag ccacaaaaat cacaccaccg ataaggctgg cggtcacata
    15481 cacttctttt tgcaaaatga tcggcacttc gttgcgtaaa atatcacgga ttaagccacc
    15541 aaaacagcct gtcacaccgc ccagagccac acagatcagt gggtgcaagc cgaaatccaa
    15601 gcctttttgc acgccaatca cggtaaatac gccaagcccg atggcatcaa acaccagcaa
    15661 gccggtttgc caacttttgc gggaaatttg gttgcggaaa atagcggtaa tcaccactgc
    15721 aagggtaatc atcagcacat agatcggttg tttcatccaa aacaccggcg tggagccaat
    15781 catcatatcc cttagcgtac cgcccccgac cccggtcaca aacgctaaaa taaacatacc
    15841 gaaaatgtcc attttgtgct ggcgggcagc aattgccccc gaaatcgcaa acacgatagt
    15901 gccgattaag tcctgaataa acaggaacga ccacggcaat gccggaatta gctcgctaaa
    15961 cattgttgct tttctcctgc tgagcggctt ttttcgcttt agctctggcg atggcggccg
    16021 caacggcggc tttgcgtggg tcttcgcttt ccgttttggg cgaatggtta ttcgccccta
    16081 cagatttatc cgatgtagtt tcgttcattg attgtagggg caaatcatta tttaccccaa
    16141 tcacagcatt ggcaatatct tccggttttt cgaccgcttg ttgagcttgt tttttcgctt
    16201 tagctctagc gatagctgct gcaacggcgg ctttgcgtgg gtcttcgctt tctgtttcgg
    16261 gcgaatggtt attcgcccct acagatttat ccgataccgt ttcgttcatt gattgtaggg
    16321 gcaaatcatt atttacccca atcacggcat tggtaatatt ttctgatttt tcgaccgctt
    16381 gctgtgcctg ttttttggct ttggctcggg caagggcagc cgcaacggcg gctttgcgtg
    16441 ggtcttcgct ttctgcttcg ggcgaatagt tattcgcccc tacagattta tccgatgcag
    16501 tttcgttcat tgattgtaga ggcaaatcat tatttgcccc aatcaaggca tttgtaacat
    16561 tttccgattt ttcgaccgct tgttctgcct gtttggctaa acgtctggct ctgcgttgtg
    16621 ccattaaatc gctgttatca ggctcgccgt taggttttac ctgtacttct gccggtattt
    16681 cttggactgt ttcaaccgct tttttcgctt tcaggcgttc aagagccgct tttacaggat
    16741 caacaccacc tgcatttgcc acttcttcac ggcgtttttc cgccgcttgg ctaatgcgag
    16801 cagttctggc atctcgttct ttttgtaagc gagcttctct cgcctcaaag cggattttag
    16861 cctcttccgc tttgcgggct ttttcctcaa tttcctcgat ttttgctttt tcttggcgga
    16921 aatattggat taacggaatg tagcttgggc aaacgtaagc acaaacgcca cactcaatgc
    16981 aggcatctaa atggtattct ttcgatttat cgtgatcttc tgcacgggca aaccaataaa
    17041 gttgctgtgg caataacccc accgggcaag catcggaaca gcttgaacag cggatacaac
    17101 tacgctccgg ttcaggtggt gcatattcaa aatgatcagg ggcaatcaag cagttcgcag
    17161 ttttggtaat cggggcttgc aatgcaggca aaataaagcc catcatcggt ccgcctaaaa
    17221 acaccggaaa gcgtttatcg gcttgataat ctacctgctc caacaagtgc tgaattggcg
    17281 tgcctaatct tgcccacacg ttccccttgt tgcgaatttt atcgcctgtc agcgtcacta
    17341 cccgttcaat caaaggttca tcatcaataa ttgcccgttt aaccgcaaac gccgtgccga
    17401 cattgtgcat cacaatgccc atttcaatag tgcgtttgcc agccggaatc tcaagtccgg
    17461 tcaacacttg aatcagctga tcagaagctc cggagggata tttagtcggg atcgcccgca
    17521 caaacatatc gttcgagcct tttaaagcgg tttctaaagc ttgaatagcg tgcggtttgt
    17581 tgtcttcaat cgcaatcacc acttcttccg ggcgaagcac ataacgcaga atgcgaatac
    17641 cttcgataag atccgcagtg aaatcttgca ttaagcgatc gtcacaggtg atgtaaggct
    17701 cacattctgc cccgttaatc accagtaatt tacagcgttt atccgccaaa cttaattttg
    17761 ttgcggttgg gaataccgca ccgcctaaac cggcaatgcc atattggtaa actttttgga
    17821 taatttgatc gcttgttagg cttaaaaaat cctcaatcgg ctggcgttcc acccatttat
    17881 ctttaccatc ggtttcaata atcaccgtta tttcgggcaa acctgaggcg tgagcggaaa
    17941 cataaggctc aatcccaatc acccgcccgg aggttgggct gtgtacgggc agttgacgga
    18001 agtgatcgcc tttcgtgagc ggctgccctt tcaataccac atcgccgact ttgactaata
    18061 attcccctgc ccagccagaa tgttgaacca gtggcacata gaaaaacttc ggtaaattta
    18121 aggtgcgaat tggcttgctg tttgattggg atttattttc catcgggtga ataccgcccg
    18181 ggaaatccca cagtttaccc gtttctttat tttggcggat tcgctcaatc actaaattag
    18241 gattgctcat ttttgcctcc gccggtaact aattttctct gcaattcagt ggtattcaca
    18301 atcggaataa ttaaatcttg gtcaaatttc cagttccaag attgggttgt cggtttaatt
    18361 ggtcgcattt caatacagtt ggtcgggcaa ggggcgacac aaagttcaca gccggtgcaa
    18421 agatccggaa taatggtgtg cattgcttta ttcgtgccga taatcgcatc aaccgggcaa
    18481 gcctgaatgc acttagtaca gccaatgcag agatcttcaa tcacaaaagc cactttcatc
    18541 tcaggctctg ccataccttc cattggcggc acttctaccc caagcaattc ggcaagattc
    18601 accactaaag gttgtccacc cggcacacat ttagtgatca catcaccatt agcaatcgcc
    18661 tcagcataag gcttacagcc cgggtagcca cattgaccgc attggctttg tggtaaaagg
    18721 gcatcaattt gatcgacaat cgggtcggat tcaactttca gtttaatcga ggaatagcct
    18781 aaaaccgccc cgaaaatcag tgcgatcaca gcaatagcga taagaatata agcgataatt
    18841 ggcaaatcaa gcattagagt ttcaccaatc ctgtaaagcc cataaaggca agcgacatca
    18901 agcctgcggt aatcagagca attgatgctc cttggaacgg acgaggcaca tcagcggcag
    18961 ccaaacgctc acgcagagcc gcaaataaaa ctaacaccag cgagaaaccg gcagcggctc
    19021 caaaaccata aagaacagat tccaccaagt tattggctaa attcacgttt aataatgcca
    19081 cccctaatac ggcacagttg gtggtaatca gcggtaaata gatcccaagc aagcgataaa
    19141 gtgtcgggct ggttttatgc acaatcattt ccgttaattg cacgatcacc gcaatcacta
    19201 aaataaacac caaggtacgc aaaaattgag cgtttaacgg ctcaagcaaa taggtttcca
    19261 tcaaataagc agagagcgag gcaaccgtca gcacaaaggt tgtcgccaac cccataccaa
    19321 tagcagtttc cacctttttc gacactccca taaacggaca aagccctaga aatttaacta
    19381 agacaaagtt attaataagg gcggtgctga tgaccaacag aatataatcg accataaatt
    19441 ccacaaaatt aaatatacaa gcggtcaaaa acgcatttta ttttgcaaaa aacagagaaa
    19501 atctgaccgt ttgttaaagc atctcattaa aaataaacgt tatattatct cttgttttcg
    19561 gctcattcac aataagaaat cggaggtact tctagtaaac ataccatatc aaatatgatc
    19621 ttgttacctt tgtttctatc tctggtagaa tggagaatgt ggggactaag ctatacagca
    19681 tgaaaggtga aaggagcttg attttctaag ttaatcctaa aaagtctcac tcctttgata
    19741 tagaggatat tagaataaca accaattaat tactcgataa ataaacataa taatccc
//
LOCUS       DANMBQ010000030        19684 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.030, whole genome shotgun sequence.
ACCESSION   DANMBQ010000030 DANMBQ010000000
VERSION     DANMBQ010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19684
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.030"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            146..394
                     /gene="rpsP"
                     /locus_tag="PXE92_000964"
     CDS             146..394
                     /gene="rpsP"
                     /locus_tag="PXE92_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDL5760229.1"
                     /translation="MVTIRLTRGGAKKRPFYQIVVVDSRSPRDGRFIERIGFFNPLAA
                     GQAERLRLDVAKVDAWVAKGADLSDRVASLVKEARKAA"
     gene            427..954
                     /gene="rimM"
                     /locus_tag="PXE92_000965"
     CDS             427..954
                     /gene="rimM"
                     /locus_tag="PXE92_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005626427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HDL5760230.1"
                     /translation="MSEQKIEVVGKLGSTYGIRGWLRLYSSTEQTESIFDYQPWFLKI
                     KGQWQQVELESWRYHSNDLIVKLKGTEDREAAQLLTNAEIGVDLSVFPELEEGDYYWH
                     DLIGCSVVNLEGYTMGTVAEMMETGSNDVLVVRNNGKDAFGKQERLIPFLYEQVVKRV
                     DLATKTITVEWDAGF"
     gene            999..1754
                     /gene="trmD"
                     /locus_tag="PXE92_000966"
     CDS             999..1754
                     /gene="trmD"
                     /locus_tag="PXE92_000966"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDL5760231.1"
                     /translation="MWIGIISLFPEMFKAITDFGVTGRAVKQNLLQVECWNPRDFTFD
                     KHKTVDDRPYGGGPGMLMMVQPLRDAIHAAKKAALAVEGGEAKVIYLSPQGRKLDQNG
                     VQTLASNQKLILICGRYEGVDERLIQTEVDEEWSIGDYVLTGGELPAMTLIDAVARFV
                     PGVLGKQASALEDSFAEGLLDCPHYTRPEVLDGMPVPEVLMSGHHEQIRKWRLEQSLE
                     RTWLRRPELLDSLALTDEQRVLLAKIKKQHKIS"
     gene            1781..2131
                     /gene="rplS"
                     /locus_tag="PXE92_000967"
     CDS             1781..2131
                     /gene="rplS"
                     /locus_tag="PXE92_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDL5760232.1"
                     /translation="MSNIIKQLEQEQLKQDLPSFRPGDTLEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTLRKVSNGVGVERVFQTHSPVIDSISVKRKGAVRKAKLYYLRE
                     RSGKSARIKERLGD"
     gene            2287..2643
                     /locus_tag="PXE92_000968"
     CDS             2287..2643
                     /locus_tag="PXE92_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760233.1"
                     /translation="MKQLSIRLPDDEFTFIKTFASAHKLTLQNFVMSAIQAKVAEMSA
                     KNKISEESNIHQPLSKDEKIMLNEAKVFYSARSHLKAENVILPSDFMEQIKSGCGAEK
                     MAEMMGYTKEDWESMK"
     gene            2645..2968
                     /locus_tag="PXE92_000969"
     CDS             2645..2968
                     /locus_tag="PXE92_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760234.1"
                     /translation="MGQITFSNIFTKVIFENVLSASTKEKIKQMLFQSVVALPPLHSE
                     RKMILQLKKQKITIFYQVIEEQSVQILAYQFGGTDKLTGVSKAHFKTLDAIFQMTDEE
                     KEGKF"
     gene            complement(2978..3310)
                     /locus_tag="PXE92_000970"
     CDS             complement(2978..3310)
                     /locus_tag="PXE92_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL5760235.1"
                     /translation="MQIEQYQQWVRQFYQQQGWYERSPFMRVTYLAEEIGEVACAVRA
                     IEIGRERPDETEASQQQKRDNLIEELGDVMDNLFVLADKYGISMTEVLERHQAKFEKR
                     YLQKNMEK"
     gene            complement(3403..4599)
                     /locus_tag="PXE92_000971"
     CDS             complement(3403..4599)
                     /locus_tag="PXE92_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDL5760236.1"
                     /translation="MNIPFCLPENISPETFLREYWQKRPLLIRNGLPQIVGLFEPEDI
                     LELALEEEVTARLIQCENEKWSVKSSPLVEEDLEELPVQWSVMVQNLEQWSPELGELW
                     QAFGFIPQWQRDDIMVSCSPLNGTVGKHYDEYDVFLVQGYGQRRWQLGKWCDPSTEFK
                     PNQPIRIFDDMGELVMDEVMNPGDVLYVPSRMAHYGVSESEQGLTFSFGLRYPNATDL
                     LENLCKTIEQQADNINSSEFHLPFRLTPNEQPNALLDPKMVKMFKHQLIDLLQNSEQF
                     DELLTHSVATAASSRRYELLQTDNEYYPDEVQEILEAGGWLQQDANVKILYTENPQRV
                     YVNGEWIDELNEAEMALLIRIANGDSISWNKLASKVQDQAELELMLDTICDWLDSGWI
                     ILSEAE"
     gene            complement(4748..6091)
                     /gene="accC"
                     /locus_tag="PXE92_000972"
     CDS             complement(4748..6091)
                     /gene="accC"
                     /locus_tag="PXE92_000972"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDL5760237.1"
                     /translation="MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVKL
                     ADETICIGPAPSVKSYLNIPMIIAAAEVTNADAIHPGYGFLSENANFAEQVEKSGFIF
                     IGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDGPVGNDPKKNKEIAKRIGYPVIIKA
                     SGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAFNNDMVYMEKYLENPRHIEIQVLADT
                     HGNAVYLAERDCSMQRRHQKVVEEAPAQGITPELRQFIGERCANACREIGYRGAGTFE
                     FLYENGEFYFIEMNTRLQVEHPVTEMITGVDLVKEQLRVAAGLPLSITQDDIKVKGHA
                     IECRINAEDPNTFLPSPGKITRLHVPGGLGVRWDSHIYSGYSVPPHYDSMIGKLITFA
                     ENRDIAIRRMENALSETIVEGIKTNIPLHTQILADKEFRKGGTNIHYLEKKLGLK"
     gene            complement(6163..6630)
                     /locus_tag="PXE92_000973"
     CDS             complement(6163..6630)
                     /locus_tag="PXE92_000973"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDL5760238.1"
                     /translation="MDIRKIKKLIELVEESGITELEVSEEEGTVRISRAAPAVAPAAV
                     QYAAAPVVAPAAPQVASTVPVAAPAEAPKAAETSGHAVLSPMVGTFYRSPSPDAKPFV
                     EVGQTVKIGDTLCIVEAMKMMNRIESDKAGVVKEILVNDGEPVEFDQKLFIIE"
     gene            complement(6883..7665)
                     /locus_tag="PXE92_000974"
     CDS             complement(6883..7665)
                     /locus_tag="PXE92_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL5760239.1"
                     /translation="MAVKNEQFIVICNGVFRLFGNIVKILSYPFHALFPKKRFTIPEY
                     SPAKIQSSIPSKITKTIWQTNYSNKVTLPMYANYLFNRLMSLSYDYRYVSTEEREAYI
                     KANADERTFNAYSKLTDGAAQADFWRIFTLLREGGIYIDIDGHLVYPLSKIIGENDSE
                     VLIKRRDKYTNFFLASEAGNWILKDTLELIISNIENRRIEGGVFVMTGPDTLNNAIGD
                     KEVNFRRDKVTCAQGTFTNEYFQYIDKPGSKWNYKKNEDLLK"
     gene            complement(7675..8112)
                     /gene="aroQ"
                     /locus_tag="PXE92_000975"
     CDS             complement(7675..8112)
                     /gene="aroQ"
                     /locus_tag="PXE92_000975"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HDL5760240.1"
                     /translation="MKKILLLNGPNLNMLGKREPQIYGSQTLADIENHLKKLAAAQDV
                     ELESFQANGEEPIINRIHQAFQHTDFIIINPGAFTHTSVAIRDALLSVSIPFVEVHLS
                     NVHSREPFRHHSYLSDIAKGVICGLGAKGYEYALDFAISHLKA"
     gene            complement(8198..8566)
                     /locus_tag="PXE92_000976"
     CDS             complement(8198..8566)
                     /locus_tag="PXE92_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5760241.1"
                     /translation="MAFTIRKMVEQDTHQVFPLMQKLAVFEHYIDSFAITPEVVMESG
                     FRKSPPDFYCLVAENASNIIGILVYYFLPYTAQNRPAIYMKELYVDETARNQKVGEAL
                     MQALKNEAKAHHCKTIKSLE"
     gene            complement(8626..9450)
                     /gene="dapD"
                     /locus_tag="PXE92_000977"
     CDS             complement(8626..9450)
                     /gene="dapD"
                     /locus_tag="PXE92_000977"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HDL5760242.1"
                     /translation="MSLQAIIEAAFERRAEITPKTVDAETKAAVEEVIAGLDNGSLRV
                     AEKKDGEWVVNQWVKKAVLLSFRIADNEIIDGAETKFYDKVPTKYGNYTEEQFKADGI
                     RAVPGAVVRKGSHIEKNVVLMPSFVNIGAYVGEGTMVDTWVTVGSCAQIGKNVHLSGG
                     VGIGGVLEPLQANPTIIGDNCFIGARSEIVEGVIVEDNCVISMGVFIGQSTKIYDRET
                     GEVHYGRVPAGSVVVSGSLPSKDGSHNLYCAVIVKKVDEKTLSKVGLNDLLRSIDE"
     gene            9598..10260
                     /locus_tag="PXE92_000978"
     CDS             9598..10260
                     /locus_tag="PXE92_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HDL5760243.1"
                     /translation="MENFANLLTGKTREHLVPLPNALSDKHYLQPQVVEAFLTLQHAA
                     KQAGFNLQPASTFRDFERQKGIWNAKFRGERKVHDDNGVAIDMAALSDLEKCKAMLRW
                     SAVPGASRHHWGTEIDIFDPDLLPENTPLLLEPWEYLEGGYFADLTKWLHVNAETFGF
                     YFPFDGKHSRVGFEPWHISYRPISNEYEQRFNDEILKAAWQDEEVAGKECLLEHFEEL
                     LK"
     gene            10257..11009
                     /locus_tag="PXE92_000979"
     CDS             10257..11009
                     /locus_tag="PXE92_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5760244.1"
                     /translation="MIQLINETQQHDKFRQICDKWQLVEDKSSPLALVLTEERLELRK
                     LDEPKLGAIAVNFVDGTMAHRRKFGGGRGEAVAKAVGIKGDYLPTVIDATAGLGRDAF
                     VLAAVGCKVLLVERNPIVAALLEDGLNRAYQDVEIGSFMQERMILADVRDISQLDPQS
                     QMAEVVYLDPMYPHKQKSALVKKEMRVFQHLVGADLDSDSFFLPAKGLAKKRVVVKRP
                     DYAPFLAEQKPDFSHTTKNHRFDVYLSHLKND"
     gene            11100..11936
                     /gene="ftsN"
                     /locus_tag="PXE92_000980"
     CDS             11100..11936
                     /gene="ftsN"
                     /locus_tag="PXE92_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HDL5760245.1"
                     /translation="MPQRDYVARSNEKKSKKNQKESNVKKILMRIIGVILFFGIGLWF
                     LKSSAPVPTVPSAPQPANSQTKSELPSRPEETWSYIRDLETRTVITDNSQTSQERLAQ
                     LTAEQKQQIEERRKQEEARLAAEQAQQKPATDVSATELAPKTEEVKSLTEEELAAKKA
                     QEQALAQKQAEEKRRQAELKKQQEAKKEQPAKIVASAATLADKAANQAGKFGLQCGAF
                     KNKAQAENMQARLAMAGFNARIASSADWNRVFVGPIGDRAATSRAQSNARSVAECVIV
                     AM"
     gene            complement(11978..13159)
                     /locus_tag="PXE92_000981"
     CDS             complement(11978..13159)
                     /locus_tag="PXE92_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL5760246.1"
                     /translation="MKTELDMIVIGGGMIGAATALGLAKQGLRLALLEKNPLPTFNPD
                     SDYDLRISAISMGSIQLLEKLGVWEQIVAMRSTPYTQLETWEIDGFNTLFSAADLGLE
                     KLGDMVENNVIQIALWEQLKQYPNCLQAVGFEQIFANKAGEYWEVTVDGNTFAAPLLI
                     AADGANSQVRQWAGIGLTAWQYRQHCLLATVTTEKPAPSGTWQQFYPTGPRAFLPLSG
                     NHGCVVWYDSPQKIAELKMLPAEKLGVAIEQHFPSRLNAELGNIQVQASGAFPLTRQH
                     AQHYVQNGVVLVGDAAHTINPLAGQGVNLGFKDVKTLLEVIEQAVKKGKNFASEQVLQ
                     RYEQKRKPDNLLMQTGMDVFYKAFKTDLLPLKIARNVGLVLADKVSPIKKQALKYAIG
                     I"
     gene            13266..13604
                     /locus_tag="PXE92_000982"
     CDS             13266..13604
                     /locus_tag="PXE92_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760247.1"
                     /translation="MSCKTHANHEHEHGEGCGHTAIKHNDHIDYLHDGHLHHNKHGDH
                     YDEHVLEVNETNPADCNAAHCCGDHVHGEVCGHEAVPHGDHIDYIVNGRLHHQHGDHC
                     DDHGPVEIVK"
     gene            13736..14605
                     /locus_tag="PXE92_000983"
     CDS             13736..14605
                     /locus_tag="PXE92_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HDL5760248.1"
                     /translation="MTLAIVYSRASIGVEAPLVTIEVHISNGQPKLTIVGLPEATVKE
                     AGDRVRSALLNANFIYPPQRITINLAPADLPKEGGRFDLPIAIGILAASGQIDSDLLT
                     QFEFLGELALTGHLRGVHGTIPAVISADKAKRQMILAKQNANEASLVSNATTYFAGSL
                     LEVVNMLNKRDKLPICQHISQHSAEIRPLVSRDLTDIIGQQHAKRALMIAAAGQHNLL
                     FLGPPGTGKTMLASRLADLLPEMTDEEAIETASVTSLVQNELNFQNWKQRPFRSPHHS
                     ASMVALVGGGCEN"
     gene            14697..16508
                     /locus_tag="PXE92_000984"
     CDS             14697..16508
                     /locus_tag="PXE92_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760249.1"
                     /translation="MFYLNNDNFKREPYRGYCPSHLEKLFTKPHLDIRGNGYYYPDNE
                     YVVAWYESDFIFKSRKAQAHAKVKLVNLTCPKYTGKNSAEYLSVLYISVPLNYLHYFT
                     IGSIWKGGVAKEQFALEEFYITVEAENQDGKRENLSIVSFGESEENGLEKPFDYTIYT
                     IPTEYHNYGDDLNRLLSISYQNQKFIIHPLHIFMMHYGYSTDIKRILATYPLDEVRER
                     LFIDKVVENFDVERYVVLPKYFVKKDAIFLYHFKYDEETTGTRVKKLVSQFRLNIHNQ
                     THPIEIDFWHTQKVELKIRGVRLGNAVLCAEIIGLNQPEGEDITLVLSQSKREKSGNK
                     TEEQNNEVNNVPITRVYTREPELDELPLTDNSPDNRTVEYNKRQFELLGRQRQIRALK
                     KAREESNQKMKALTPDEIDSLGVGESDGRNGKVGLAFCFLDDTPVGKSSKLYKLWQHA
                     KAVAEWNHGEAHWYTPNLGFRNDDELLPVSLETNKCFDYPEIAIIIRLQIYGETFFLI
                     DFSMKQRDISIRGLGYKPDPNEDFLYESDMSKSELSELLSAVHHHEHLPKEYIEKKNK
                     EKTKLTTFNHSEAESSNWAYNAVQKLTSRAITKPTYF"
     gene            16517..19297
                     /locus_tag="PXE92_000985"
     CDS             16517..19297
                     /locus_tag="PXE92_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HDL5760250.1"
                     /translation="MNAEQRVIVTPTFWGKFFGKIKSVELQQNKVIVTDKKNNITEHD
                     LGKTFDFPAIQKSFFGTKLFFKDDSTEVVLSKLAKKQTDSLLLEIEKVVASNIKVKVK
                     EGFQHFANLAENQYLRDSDIPTLNDRVRLSVLSYGDNKEHFQKYFDESLVKKIQYISS
                     LFPVNAINAQTIRREYEQHVLNHRKHFFDVIESNPLTEQQRLSVIRNNDINMVLAAAG
                     TGKTSVMVAKALDLIDSGACKSEDILILAYNRDAATELSERLQERAREANLDLENSPS
                     ISTFHALGRRIIKECGKSVHLSKFAEDPMKLDRWFNKWLEDYIKEDPDNLAKFIQLAY
                     QPIDPFQFKTKDEYDRYVNDNDYRTLQGERVRGYQELLIANWLFSHSVEYEYEPRYVS
                     KRRIEIGFDYKPDFSLGDGVYLEHFGIDRQGRTRADINAQEYNANIQRKRELHAEHNT
                     TLLETYHYNWVENTLYKRLEQLMNEQFIPLKPKSQQEILDALNESGIFKENKNRYLKC
                     LQAIRTERLDYQQILKRLTDAKIVYAKEYATLLMRIHDAYVKELRSANEIDFDDMILL
                     ATQLVKTGEFKPKWKHILVDEFQDISMARLELLKEIYTKGPRPIWTVVGDDWQSIYRF
                     SGGKLEVTTRFNDMVGSHTLSKLEKTYRYNNSIADTAGQFIMQNPEQYQKNVVTHTKV
                     ADSCVHLYDSHVVKDEKSEANISLKASAILKLIRQKAPEATVAILARYRYLLEDAKSV
                     IKDKNVKFWTFHGSKGLEADYCILLGFFQGKVGFPNQNKEEAVVEALLPMLDSFPHSE
                     ERRLFYVALTRAKKESYLIADANAPSEFINELLSPKYKIDIVSKRFQERYRTIFKCNE
                     CSTGYFVMKQGKFGQFYSCTSGEVCRSSPRICEKCGRPMKLREGKFGQFWGCSGYGIK
                     GDQCTNTRKYFM"
     gene            19319..>19684
                     /locus_tag="PXE92_000986"
     CDS             19319..>19684
                     /locus_tag="PXE92_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5760251.1"
                     /translation="MDLFESKKQLIELIKKYDSDKEIYSSSSYNESQLRTDFLDPFFG
                     LLGWDITNSKNKLTSEREVIVEEPLKEKVSENVKKPDYTFRFNSQRKFFVEAKKPSVK
                     IKTDPLPAHQVRRYGFTAKL"
BASE COUNT         5947 a         3970 c         4179 g         5588 t
ORIGIN      
        1 aaaagagtca tatcaatgaa tctcccttgt ctttccgcaa aaaatctgta taatttgacc
       61 gcttgttttc tcttttgaaa caagttcgtt accctcacct cgaacgaggg tttatttttt
      121 actatcaaca tttagaggaa aggttatggt aaccattcgt ttaactcgtg gcggagctaa
      181 aaaacgccca ttttaccaaa tcgtggtagt ggacagccgt tcacctcgtg atggtcgctt
      241 tatcgagcgt atcggtttct tcaacccatt agcagcaggt caagctgagc gtttacgctt
      301 agatgtggct aaagtagatg cttgggttgc taaaggtgct gatttatcag accgtgttgc
      361 ttctttagta aaagaagctc gcaaagcagc ttaattttta agccaaaatt aaataagtag
      421 gtgagtatga gcgaacaaaa gatcgaagtt gtcggaaaat taggttcaac ctatggtatc
      481 cgtggttggt tgcgtctcta ttcatcgaca gaacaaactg agagcatttt cgactaccag
      541 ccgtggtttt taaaaattaa aggtcagtgg cagcaggtcg aattagaaag ctggcgttat
      601 catagcaatg atttgattgt taaattgaaa ggcactgaag accgtgaagc cgcacagtta
      661 ttaaccaacg ctgaaattgg cgtggatttg tctgtgtttc ctgaattgga agagggagat
      721 tactattggc acgatttgat cggctgttcg gtagtaaact tagagggcta cacaatggga
      781 acagttgccg aaatgatgga aacaggttca aatgatgtgc ttgtggtgcg taataacggc
      841 aaagatgctt tcggtaaaca agaacgatta attccgtttt tgtatgaaca agtagttaaa
      901 agagtagatc tcgccaccaa aaccattacg gtggagtggg acgctggttt ctaacctcag
      961 gtatgcggtg agctttggaa aacatttaag gcgttaaaat gtggattggt attatttcac
     1021 tgtttcctga aatgtttaaa gcaattaccg atttcggggt gacaggacgt gcagttaaac
     1081 aaaatctact gcaagttgaa tgttggaatc ctcgtgattt tacattcgat aaacataaaa
     1141 ctgtagatga tcgcccttat ggcggtggtc cgggaatgtt gatgatggtg caacctttgc
     1201 gtgatgcgat tcacgcagcg aaaaaggcgg cattagcagt agaaggcggt gaagctaaag
     1261 tgatttatct ttcgccgcaa ggacgtaaac tcgatcaaaa cggtgtgcaa acactggctt
     1321 caaatcagaa actgatttta atttgtggac gatatgaagg cgtggacgag cgattgattc
     1381 aaacagaagt tgatgaagaa tggtcaatcg gtgattacgt tctcacaggg ggggaattac
     1441 ctgcaatgac attaattgat gcagttgcaa ggtttgttcc cggggtatta ggcaaacagg
     1501 cttccgcgtt agaggattct ttcgcagagg gattattaga ttgcccacat tatacccgcc
     1561 ctgaagtatt agacggtatg cctgttccgg aagtgctgat gtctggacac catgaacaaa
     1621 ttcgtaaatg gcggttggaa caatcgctgg aacgaacgtg gttaagacgc cctgagctat
     1681 tggatagcct agctctgact gacgaacagc gtgtgttgtt agctaaaatt aaaaaacagc
     1741 acaaaatcag ttaattctag gattatagaa ggtttttaaa atgagtaaca tcatcaaaca
     1801 acttgaacaa gaacagttaa aacaagactt acctagcttc cgtccgggtg acacattaga
     1861 agttaaggta tgggtagtag aaggtagtaa aaaacgtttg caagcgttcg aaggcgtggt
     1921 tattgcaatt cgtaaccgtg gcttgcactc tgcattcact ctacgtaaag tttcaaatgg
     1981 cgtaggcgtt gagcgtgtat tccaaactca ctcacctgta attgacagca tttctgttaa
     2041 acgtaaaggt gcggtacgta aagctaaact ttactactta cgtgagcgtt ctggtaaatc
     2101 tgcacgtatc aaagagcgtc ttggcgacta attgctacaa aacagtgaaa tgcacaaaag
     2161 ccttgaggaa actcaaggct tttgcttttt gtacttacaa gcagttattt ttcctcaatg
     2221 atttacaaat cttgctttct tttttgttat aatgttaaca agataacatt aatgataggt
     2281 gtcgatatga aacaattaag tattagattg ccagacgatg aatttacttt tattaaaaca
     2341 tttgcttctg ctcataaact gactttacaa aattttgtga tgtccgcaat ccaagctaaa
     2401 gttgcagaaa tgtctgctaa aaataaaata tctgaagaaa gtaacattca tcaacctctt
     2461 tctaaagatg aaaaaataat gctaaatgag gcaaaagtat tttattctgc tcgttcgcat
     2521 ttaaaggcag aaaatgtgat tcttccgagt gattttatgg agcaaattaa atcaggctgt
     2581 ggagcagaaa aaatggcaga aatgatggga tataccaaag aagattggga gtcaatgaag
     2641 taatatgggg cagattacat ttagtaatat tttcacaaaa gtgatttttg agaatgtgct
     2701 ttctgcttca actaaagaga aaataaaaca aatgcttttt cagtctgtgg ttgcattacc
     2761 tcctctccat tcagaaagaa aaatgatttt acagttgaaa aagcaaaaaa ttaccatttt
     2821 ttatcaagtt attgaggaac aatctgtgca aatcctcgct tatcaatttg gtggaactga
     2881 taaattgaca ggtgtgtcta aagctcactt taaaacacta gatgccattt ttcaaatgac
     2941 ggatgaagag aaagaaggaa aattctaatg taagcggtta tttttccata tttttttgca
     3001 aataacgttt ctcaaatttt gcttgatggc gttcaagcac ttccgtcatc gaaatgccat
     3061 atttatcggc taatacaaaa agattatcca tcacatcgcc taactcttcg attaagttat
     3121 ctcgtttttg ctgttgtgaa gcttcggttt cgtccggtcg ttcacgcccg atttcaatcg
     3181 ctcttactgc acaagccact tcgccgattt cttctgctag ataagtcacc cgcataaaag
     3241 ggcttcgttc ataccaacct tgttgttggt aaaactggcg aacccattgt tgatattgtt
     3301 caatttgcat tttatttctg attcaaaaag tagggacgaa aaatttttcg cccttttata
     3361 agaaaatgta tcagggcaaa tgatgatttg cccctaggag tgttactctg cctcagagag
     3421 aataatccag ccactatcca gccagtcgca aatggtgtct agcattagct ccagctccgc
     3481 ttggtcttgc actttggagg caagtttgtt ccacgaaatc gaatctccat tggcgatacg
     3541 aatcagtaat gccatttctg cttcgtttaa ctcatcaatc cactcgccat ttacataaac
     3601 ccgttgaggg ttctcggtgt agaggatttt tacatttgca tcttgctgta accagccgcc
     3661 ggcttcgaga atttcttgca cttcgtcagg gtaatattca ttgtcagttt gcaataattc
     3721 ataacggcgg gagcttgccg cagtggcaac actgtgagtg agtaactcat cgaactgttc
     3781 ggaattttgg agcaagtcga ttaactgatg tttaaacatt ttcaccattt tcggatcaag
     3841 caacgcattc ggctgttcat tcggcgttaa gcggaacgga agatgaaatt ccgatgaatt
     3901 aatgttgtcg gcttgttgtt cgatggtttt gcagagattt tccagtaaat cggtcgcatt
     3961 tggataacgt aaaccaaaag agaaagttaa accttgctcg ctttcggaaa caccatagtg
     4021 agccattcga gacggcacat aaagcacatc acccgggttc attacctcgt ccattaccag
     4081 ttcgcccata tcatcaaaaa tgcggatcgg ttggtttggt ttgaattcgg tgcttggatc
     4141 gcaccatttg cctaattgcc aacgacgttg cccatagcct tgcaccaaga acacatcgta
     4201 ctcatcataa tgtttgccga cagtgccgtt gagcggtgag caagaaacca taatgtcatc
     4261 acgttgccat tgcgggataa aaccaaaagc ctgccaaagc tcgcctagct caggagacca
     4321 ttgctcgagg ttttgcacca ttacagacca ttgtacaggt aactcttcca aatcttcctc
     4381 aacaagcggg ctggatttaa cagaccattt ctcgttttcg cattgaatca ggcgtgcagt
     4441 gacttcttcc tctaatgcca gttctaaaat atcttccggc tcaaacaatc cgacaatttg
     4501 gggtaagccg ttacgaatta atagcggtcg tttttgccaa tattctcgca aaaaggtttc
     4561 agggctgata ttttcaggta agcagaatgg aatgttcata atggctcctt gctacgtgct
     4621 tctttgagat tactgatatt ctacccgaga aatcaggaaa aacgggaaat tttttatgat
     4681 ttagcgacat cattcacatt ttgaagagga aataatgaaa aaggcgaaca ttgttcgcct
     4741 ttgaaattta ttttaaaccg agttttttct cgagatagtg gatattggtg ccacctttgc
     4801 ggaattcttt atccgcaaga atttgagtat gtaaaggaat attggtttta atgccttcca
     4861 caatggtttc ggaaagggca ttttccatcc ggcgaatcgc aatatcacga ttttcagcaa
     4921 aggtaatcaa tttaccaatc attgaatcgt aatgtggcgg cacgctatag cctgagtaaa
     4981 tatgtgaatc ccaacgcaca cctaaaccac ccggaacgtg taaacgggta attttacccg
     5041 gcgatggcaa gaaggtgttt ggatcttctg cgttgatacg gcactcaatg gcgtgacctt
     5101 tcactttaat atcatcttgt gtgatcgaaa gtggtaagcc ggctgccaca cgcagttgct
     5161 cttttaccaa gtccacaccg gtaatcattt cggttacagg gtgttctacc tgtaagcggg
     5221 tgttcatttc aatgaagtaa aactcgccgt tttcatataa gaactcaaaa gtacctgcac
     5281 cacggtagcc aatttcacgg caggcattgg cacaacgctc cccaataaat tgacgcaatt
     5341 caggtgtaat accctgagca ggtgcttctt ccaccacttt ttggtggcga cgttgcattg
     5401 aacagtcacg ctctgctaaa taaaccgcat taccgtgagt atcggcaagt acttggattt
     5461 caatatggcg tggattttct aaatatttct ccatatacac catatcgtta ttaaatgccg
     5521 ctttcgcttc ggctttcgtc attgcgatag attcttccaa atctttctcg tgatgaacca
     5581 cacgcatacc acgaccgcca ccaccacctg atgctttgat gatcaccggg tagccgatac
     5641 gtttagcgat ttctttattt ttcttcggat cgttaccaac cggaccgtca gaacccggta
     5701 cgcaaggcac gccggctttt ttcattgcat tgatagcaga gactttatcg cccattaagc
     5761 gaatcacatc agccgttgga ccaataaaga taaagcctga tttctcaact tgttcggcaa
     5821 agtttgcgtt ttcagataag aaaccgtagc ccggatgaat agcatcggca ttcgttactt
     5881 cggcagcggc aataatcatc gggatattta aatagctttt taccgatgga gcaggaccga
     5941 tacaaatggt ttcatcggct aatttaacgt gttttaattc acggtcggca gttgaatgca
     6001 ctgcaaccgt tttaatgccc aattctttac aagcacgcaa aatacgcagg gcaatttcac
     6061 cacggtttgc gataacaact ttttctaaca tagggaaatt ccttgtgttc tagaaaatgt
     6121 agggcgtgtt gcacacgccc gttggataat ttaaggaaga gcttattcaa tgatgaataa
     6181 tttttggtcg aattctaccg gttcgccatc attaactaag atttctttta ccacaccggc
     6241 tttgtctgac tcgatacggt tcatcatttt cattgcttct acaatacata acgtatcacc
     6301 gattttcacg gtttgaccca cttcaacgaa cggttttgca tctgggcttg ggctacggta
     6361 gaaagtcccc accattggtg aaagcactgc gtggccactc gtttctgcgg cttttggtgc
     6421 ttcagccgga gctgcaacag gtactgtcga agctacttga ggtgccgctg gtgcaacaac
     6481 aggagctgct gcatattgaa ctgcagctgg tgcaacagct ggagcagcac ggctaatacg
     6541 caccgtacct tcttcttcag acacttctaa ctcggtaatg ccagattctt caactaattc
     6601 aataagtttt ttgattttgc gaatatccat aataagattc cgtatgtgat taaataaaat
     6661 aaaaaagaga actccacatt tggggtataa attcaaatgt agagttaaaa aatgctgggc
     6721 gtagaatacc tgaatttcgc taattttgcg aataaaatct gataattttg gcgaaaatgg
     6781 acgattttag cattcatcgt accagttagg atttttggaa aatggtgact cacaagcgat
     6841 tgaaaattgc caattttttg taaaaaacaa ccgcttgtca gattatttca ataaatcttc
     6901 atttttcttg taattccact tgctaccggg cttgtcgata tactgaaaat attcgttggt
     6961 aaaagtacct tgagcacaag ttactttgtc tcggcggaaa tttacttctt tatcaccaat
     7021 ggcattattt agggtgtcag gaccggtcat aacaaacacg ccaccttcaa tccgacgatt
     7081 ctcaatattg ctgataatca gctcaagggt gtcttttaga atccaatttc cagcttccga
     7141 agccaagaaa aagttggtgt atttatcacg gcgtttaatt aacacttcgc tatcattttc
     7201 gccaataatt ttagagagtg ggtaaaccaa atgcccgtca atatcaatat aaatgccacc
     7261 ttctcggagc aaagtaaaaa ttcgccaaaa atcagcttgt gccgcaccat cggttaattt
     7321 gctataggcg ttaaaggtgc gttcatcggc gttggccttg atgtatgcct ctcgttcttc
     7381 tgtgctaacg tagcgataat cgtagctcaa tgacattagg cggttaaaca gataattcgc
     7441 atacattggc aaggtgactt tgttagaata attcgtttgc caaatggttt tggtaatttt
     7501 gctcggaatg cttgattgga tttttgccgg gctatattcc ggaatggtga aacgtttttt
     7561 cggaaaaagt gcatggaacg gataactcaa tattttgacg atattaccga ataaacggaa
     7621 gactccgtta cagatcacaa taaattgttc atttttaaca gccattttat taccttatgc
     7681 ttttaagtgt gaaattgcaa aatccaacgc atattcatag ccttttgccc ctaaaccgca
     7741 aataacgcct tttgcaatat cacttagata ggagtgatgg cgaaaaggtt cacggctatg
     7801 aacgttagac aaatgcacct caacaaacgg aatcgacaca ctcaataacg catcacgaat
     7861 tgccacgctg gtgtgagtaa atgccccggg gttaataata ataaaatcgg tatgctgaaa
     7921 ggcttggtga atacggttga taatcggctc ttcaccgttg gcttgaaagc tctccagctc
     7981 aacatcttgg gccgcagcca atttttttaa gtggttttca atatccgcca aagtttgcga
     8041 accgtaaatt tgtggctcac gtttgcccaa catatttaaa ttcgggccgt taaggagaag
     8101 gatttttttc atatttactt attcaacttg taattcataa ttaagccatt cacggttttc
     8161 tttcgccccc aagcgttgat aaaaacgaat accaccgtca ttccaaggat tttattgtct
     8221 tacaatgatg tgccttcgcc tcatttttca aggcttgcat taacgcctct cccactttct
     8281 gattccgagc agtttcatca acataaagct ctttcatata aatagcgggg cggttttggg
     8341 cagtgtaagg aagaaaataa taaaccaata tgccgataat gttagacgca ttttcagcca
     8401 ctaaacagta aaaatcgggt gggcttttgc gaaagccgga ttccattaca acttcaggag
     8461 taatcgcaaa agaatcgata tagtgctcaa acacagccag tttttgcatc agagggaaca
     8521 cttggtgggt atcttgttcg accattttgc ggattgtaaa tgccataaaa ttccttacaa
     8581 gcggtaaaaa aatccctcac ttttgcaaag cgagggaggt tttaattatt cgtcaataga
     8641 acgtaataag tcgtttaagc ccactttgct taaggttttc tcatccactt ttttcacaat
     8701 caccgcacag tagaggttgt gtgaaccatc ttttgatgga agcgagcctg aaaccacaac
     8761 agagcctgcc ggcacacggc cgtaatgtac ttcgccggtt tcacggtcgt aaattttggt
     8821 agattgaccg ataaacacgc ccattgagat cacgcagtta tcttcgacaa tcacgccttc
     8881 tacgatttca gaacgtgcac cgataaagca gttgtcgccg atgatggttg ggttcgcttg
     8941 taatggctct aacacaccac cgatgcccac gccaccagaa aggtgaacat ttttaccgat
     9001 ttgcgcacaa gaacccactg ttacccaagt gtccaccatt gtgccttcgc caacgtatgc
     9061 accgatgttc acgaaagatg gcattaacac cacgtttttc tcgatatgtg aacctttacg
     9121 caccaccgca cccggcacgg cacgaatgcc atctgctttg aattgctctt cggtgtagtt
     9181 gccgtatttg gttggcactt tgtcgtagaa tttggtttct gcaccgtcga tgatttcatt
     9241 gtcggcaata cggaatgaaa gtaataccgc ttttttcacc cattggttta ctacccactc
     9301 gccatctttt ttctcggcaa cacgcagtga accgttgtct aatcctgcga tcacctcttc
     9361 tactgctgct ttggtttcag catcaacggt tttcggagta atttccgcac ggcgttcaaa
     9421 tgccgcttca ataatagctt gtaaagacat tgttgtgttc cttcaatata taaattaaaa
     9481 cagaaaattc ggctcacttt ttaacataga aaggcgttta tttccacaag aaaaaacata
     9541 tcgcagaaat ttagtttata attccaagcc acttatttga tacaagcggt gatttttgtg
     9601 gaaaattttg caaatctgct taccggtaaa acgcgtgagc atttagtgcc gttgccgaac
     9661 gctctttcgg ataaacatta ccttcagcct caggtggttg aggctttttt gacgttgcag
     9721 catgctgcaa aacaagccgg ctttaattta cagcctgcca gtacttttcg tgattttgaa
     9781 cgccaaaaag ggatttggaa tgcgaagttt aggggtgagc gtaaggttca cgatgataac
     9841 ggggttgcga ttgatatggc ggcgttatcg gatcttgaaa agtgcaaagc aatgttgaga
     9901 tggtctgcgg tgccgggggc aagtcggcat cattggggaa cggaaattga tatttttgac
     9961 cctgatttat tgccggaaaa tacgccttta ttgcttgagc cgtgggaata tttggaaggt
    10021 ggctattttg ccgatttaac caagtggtta cacgttaatg cggaaacatt tggcttttat
    10081 ttcccgtttg acggtaaaca ttctcgagtg ggctttgagc cgtggcacat tagctatcgc
    10141 ccgatttcaa atgaatatga gcaacgcttt aacgatgaaa tcttaaaagc tgcgtggcaa
    10201 gatgaagaag tggcgggtaa ggaatgctta cttgaacatt ttgaagaatt actaaaatga
    10261 tccaattaat taacgaaacc caacaacacg acaaattccg ccaaatttgc gacaaatggc
    10321 agctggttga agataaatcc agcccgttag ccttagtgct aacggaggaa cgattggaac
    10381 tacgcaaatt agacgaaccc aagctcgggg cgattgcagt gaattttgtg gacggtacga
    10441 tggcacatcg gcgtaaattc ggtggtgggc gaggtgaagc cgttgcgaaa gcggtcggca
    10501 ttaaagggga ttatttgcca actgtgattg atgcgacagc cggtttaggg cgagatgctt
    10561 ttgtattagc agcggttggt tgtaaagtgc tgttagtgga acgcaatcca attgtcgctg
    10621 ccttgttgga agatggttta aaccgagctt atcaagatgt ggaaatcggc agttttatgc
    10681 aagaaagaat gatcttagcc gatgttcgag acatttctca gctagatcca caatcccaaa
    10741 tggctgaggt agtgtattta gatccgatgt atccgcacaa acaaaaaagt gcgttggtga
    10801 aaaaagaaat gcgggtgttt caacatttag ttggggcaga tttagattcg gacagctttt
    10861 tcttaccggc aaaaggattg gcaaaaaaac gtgtggtagt gaagcgtccg gactatgccc
    10921 cgtttttagc ggagcaaaag cctgattttt cacacaccac caaaaatcac cgttttgatg
    10981 tttatctttc tcacctgaaa aatgattaaa ggtgggtcat gcgataggca agcggttatt
    11041 tttacagtaa aatttacaaa ttatgttatc gtttatttat atttaaaaag gcggttatcg
    11101 tgccacaacg tgattatgtc gctcgttcca acgagaaaaa aagtaaaaaa aatcaaaaag
    11161 aaagtaatgt taaaaagatt ttaatgcgga ttatcggggt aattttattc ttcggtattg
    11221 gtttatggtt tttgaaatcc agtgcacctg taccaacagt tccgtcagca ccgcagcctg
    11281 ctaattcaca gactaaaagc gaattaccaa gtcgaccgga agagacgtgg agctatattc
    11341 gtgatttaga aacccgtacg gtaattaccg ataatagcca aacttcacaa gaacgtttgg
    11401 cacaattaac ggcggaacaa aagcagcaaa ttgaagaaag acgcaaacaa gaagaagcac
    11461 gcttagccgc tgagcaagct caacaaaagc ctgcgaccga tgtatctgct acagaattgg
    11521 ctccgaaaac agaggaagtt aagtcgttaa cggaagaaga attagcagca aaaaaagcac
    11581 aggagcaagc tttagcacaa aagcaagcgg aagagaaacg cagacaagca gagcttaaaa
    11641 aacagcagga agcgaaaaaa gagcagccgg ctaaaattgt agcaagtgct gcaacactgg
    11701 cagataaagc tgcaaatcag gcgggtaaat ttgggttaca gtgcggtgca tttaaaaata
    11761 aagcccaagc cgaaaatatg caagcaagat tggcaatggc aggttttaac gcccgtatcg
    11821 caagcagtgc cgattggaac cgtgtttttg tcggcccgat aggtgacaga gcggcaactt
    11881 ccagagctca atccaatgca cgcagtgtag cggaatgtgt gattgtggcg atgtaaaatt
    11941 gattgaaata ttgaagagag ctataggctc tcttttttta tatcccaatc gcatatttca
    12001 aggcttgctt tttgatgggt gacactttat cagccaatac taaaccgaca ttgcgggcaa
    12061 ttttgagcgg taataaatcg gtcttaaacg ctttataaaa cacgtccatg cctgtttgca
    12121 tcagtaaatt atccggttta cgtttttgct catagcgttg aagcacctgc tcacttgcaa
    12181 aatttttgcc ttttttgacc gcttgttcga tcacctcaag caaggtttta acatctttaa
    12241 agcctaaatt tacaccttgt ccggcaagcg gattaatggt gtgagccgca tcgccgacta
    12301 ataccacccc gttttgcaca tagtgctgag cgtgctggcg ggttagcggg aaagcccctg
    12361 aagcctgcac ctgaatgttg cctaattctg cgttgagccg gcttgggaaa tgttgctcaa
    12421 tcgcaactcc cagcttttct gctggaagca ttttcagttc ggcaattttt tgtggtgaat
    12481 cgtaccaaac aacgcagccg tgattgccgg aaagcggtaa aaaggctcga gggccggttg
    12541 gatagaattg ttgccaagtg ccgcttggag caggtttttc ggtggtaacg gtggcgagta
    12601 aacagtgttg gcgatattgc caagcggtta aaccaatgcc cgcccattgg cgaacctgtg
    12661 aatttgcacc gtctgcggca atcagcagtg gggcagcaaa ggtgttgcca tcaaccgtca
    12721 cttcccaata ctcgcccgct ttatttgcaa aaatttgctc aaatccgacc gcttgtaggc
    12781 agtttggata ttgctttaat tgctcccata acgcaatttg aataacgttg ttttcgacca
    12841 tatcgccgag cttttccaaa cccaaatcag ctgccgaaaa aagagtgttg aatccatcaa
    12901 tttcccaggt ttcgagctgg gtataagggg tgcttctcat tgcaacaatt tgctcccaca
    12961 cgcccaattt ttctaacagt tgaatcgagc ccatactaat ggcggaaatt cgcaaatcgt
    13021 agtctgaatc aggattaaag gtcggcagag ggtttttctc caacaaggct aaacgcagcc
    13081 cctgttttgc taagcctaga gctgttgctg ccccaatcat accgccaccg attacaatca
    13141 tatctaattc agttttcatt ttttcttcct ttttagttag gcaaaatact gctaaaacgc
    13201 cttgaattgt agtgcatttc agattaggat caaaccgatt tatctattta tctaaggagc
    13261 gttttatgtc ttgcaaaact catgcaaacc acgagcacga acacggcgaa ggctgtggtc
    13321 atactgctat taaacataac gaccatatcg actatttaca cgatgggcat ttacaccaca
    13381 acaaacacgg cgatcactat gacgaacacg ttttagaagt gaatgaaacc aacccggcag
    13441 actgtaatgc cgcccattgc tgcggcgacc acgttcatgg tgaggtttgc ggacacgaag
    13501 ctgtgccgca cggcgatcat atcgactaca tcgtgaatgg gcgtttgcac caccaacacg
    13561 gcgaccactg cgatgaccac gggccggttg aaattgtgaa ataagatttt tgatgggagg
    13621 ttttagcctc ccattattat ttttgcgatc tcgctcgaaa aattgaacat tcctgctacc
    13681 cctcttccga ttttcctttt atgctctcgg tattgatttc taataccgaa atgtgatgac
    13741 cttagcgatt gtttacagcc gagcctccat tggcgttgaa gccccgttgg tgacgattga
    13801 agtgcatatt agcaacggac aaccaaaatt aaccattgtc ggcttgcccg aagccacagt
    13861 gaaagaggct ggtgatcgtg tgcggagtgc gttgctgaac gctaatttta tctatccgcc
    13921 acaacggatc acgattaatc ttgctccggc agatttaccc aaagaaggcg gacgttttga
    13981 cttgccgatt gcgattggca ttctggcagc ctcagggcaa attgattctg atttattaac
    14041 gcagttcgag tttttgggcg agttggcact gacagggcat ttgcgaggag tgcacggcac
    14101 gattccggca gtgatttctg ccgataaagc caaacggcag atgatcttag ccaagcaaaa
    14161 tgcgaatgag gcatcgcttg tttccaatgc caccacctac tttgccggct cgttgttgga
    14221 ggtggtaaat atgctcaaca aacgggataa actgccgatt tgtcagcaca tttcgcaaca
    14281 ttctgccgaa attcgaccgc ttgtcagccg agatcttact gatattatcg ggcaacaaca
    14341 cgccaagcga gccttaatga ttgccgctgc cgggcaacat aatttgctgt ttctcggacc
    14401 accgggaacg ggtaaaacaa tgttggcaag ccggctggcg gatttactgc cggaaatgac
    14461 cgatgaggag gcgattgaaa ccgcctcggt gaccagcctt gtgcaaaatg agctgaattt
    14521 tcagaactgg aaacaacgcc cgtttcgttc gccccatcac agtgcatcaa tggtggcatt
    14581 agtgggaggt ggctgtgaaa actagaaata aatgtcaaaa acaagaaata aatgtcacaa
    14641 atctttctct aatttcgcta taattcgatc atcaaaactt taaggggaaa tccgttatgt
    14701 tctacctcaa taacgacaat ttcaaacgag aaccttatcg tggatattgt ccgagtcacc
    14761 ttgaaaagct ttttactaaa ccacaccttg atattagagg taacggttat tattaccctg
    14821 acaatgaata tgttgtagct tggtatgaat cggacttcat tttcaaatca agaaaagctc
    14881 aagcacatgc aaaagtaaag cttgttaatt taacttgccc caaatacact ggcaaaaaca
    14941 gtgctgaata tttaagcgtt ttgtatatct ccgttcccct taattatcta cattatttca
    15001 ctatcggcag tatctggaaa ggcggtgtcg ccaaagagca gtttgctctc gaagaatttt
    15061 acattacggt tgaagctgaa aatcaagatg gtaaacgaga aaacctctca atcgtttcat
    15121 tcggtgagag tgaggaaaac ggtttagaga aaccatttga ttacacaatc tacactatcc
    15181 ccacagaata tcacaactac ggtgatgacc taaaccgact actttccatc tcttaccaaa
    15241 atcaaaaatt cattatccat ccgctacata tttttatgat gcactacggg tactctacgg
    15301 acatcaagcg tatcttggca acatacccac ttgacgaggt aagagaacgc ctatttatag
    15361 ataaggtcgt tgagaatttt gatgtagagc gttatgtcgt tttaccgaaa tactttgtaa
    15421 aaaaagatgc gattttcctc tatcacttca aatatgacga agagactacg ggaacaaggg
    15481 taaaaaagct tgtaagccag tttaggttaa atattcacaa tcaaacacat ccaatagaaa
    15541 tagatttttg gcacacgcaa aaggttgaat tgaaaatccg tggtgttcga cttggaaatg
    15601 ctgtgttatg cgcagaaatt atcggtctta atcagcccga aggcgaagat attacgctag
    15661 tgctatctca atcgaaaaga gaaaaatcgg gtaataaaac cgaggaacaa aataacgagg
    15721 taaataacgt tcctattacc agagtttata cacgagaacc tgaattggat gagttaccac
    15781 tcaccgataa ctccccagat aatcgaacag tcgaatacaa caagcgacaa tttgaactct
    15841 tgggccgtca acgccaaatc agagcgctca agaaagcacg cgaagagagt aatcagaaaa
    15901 tgaaagcctt gactccagat gagatagact cactgggtgt aggtgaatca gatggccgaa
    15961 acggtaaggt tggactcgct ttctgtttcc ttgatgatac acctgttggc aaaagctcca
    16021 aactatacaa attatggcag cacgcgaagg ctgttgcgga atggaatcac ggtgaggcgc
    16081 actggtacac gcctaatctc ggttttagaa atgacgatga actccttccc gtttccttag
    16141 aaaccaacaa atgtttcgac taccctgaaa tcgcgataat tatccgcctc caaatatacg
    16201 gagaaacatt tttcctgatt gatttctcaa tgaagcaaag agatataagc attcgtggct
    16261 tagggtataa acccgatcca aacgaagatt ttctctatga aagtgatatg agcaaaagcg
    16321 aattatccga attattgtcc gcagttcatc atcatgaaca tctgccaaaa gagtacatag
    16381 agaaaaagaa caaagaaaaa accaaactca ctacatttaa ccatagcgaa gccgaaagta
    16441 gtaactgggc ttataacgcg gtgcaaaaat taacttcaag ggcaattact aagccgacat
    16501 atttttaatt atttttatga atgcagaaca acgtgtaatt gttactccga cattttgggg
    16561 taaatttttt ggaaaaatta aaagtgttga acttcaacaa aacaaagtta tcgtaactga
    16621 caaaaagaat aatataactg aacatgattt aggaaaaact tttgactttc cagctatcca
    16681 gaagtctttc tttggtacta aattattttt taaagacgat agcacagaag ttgttttatc
    16741 aaaacttgcg aaaaaacaaa ctgatagtct attacttgaa atcgaaaaag tagttgcatc
    16801 taatattaaa gtgaaagtaa aagagggttt tcaacacttt gcaaatttag ccgaaaatca
    16861 atatctcaga gattccgaca ttcctacatt aaatgatcgt gtaagattgt cagtgctttc
    16921 ctatggggat aacaaagaac attttcaaaa atactttgat gaaagtttgg ttaagaaaat
    16981 tcaatatatc tcttcacttt ttcctgtaaa tgccataaat gctcaaacaa ttcgaagaga
    17041 atacgagcaa catgttttaa atcatcgcaa gcatttcttt gatgtcattg aatctaatcc
    17101 gcttactgag caacaaagat tgtcagtcat tcggaacaac gacatcaata tggttcttgc
    17161 tgccgcgggg acaggaaaaa cgtctgtaat ggtcgcaaaa gcattggact taattgattc
    17221 tggtgcttgt aaaagcgaag atattttgat tcttgcatac aaccgcgatg cagcaaccga
    17281 actatccgaa cgcttacaag aacgtgcacg agaagccaat ttagatctgg aaaatagccc
    17341 tagcatctcg actttccatg cgcttggccg aagaattatt aaagaatgtg gaaaatcagt
    17401 ccacttgtca aaatttgccg aagatccgat gaaattagat agatggttca acaaatggct
    17461 agaggactac atcaaagaag atcctgataa tcttgcaaaa ttcattcaac ttgcatacca
    17521 acctatcgat ccattccaat tcaaaacgaa agacgaatac gatagatatg taaatgacaa
    17581 tgactatcga accttacaag gcgaacgcgt tcgtggttat caagagttat tgatcgcgaa
    17641 ctggcttttt agccacagcg tagaatatga gtatgaacca aggtatgtat caaaacgccg
    17701 tatcgagatt ggttttgact acaaacccga tttctctttg ggtgatggtg tttaccttga
    17761 acatttcggc attgaccgac aaggtagaac tcgcgcagat attaacgcgc aggaatataa
    17821 tgccaatatc caaagaaaac gtgagttaca cgccgaacat aatacaacat tactggagac
    17881 ataccactac aactgggtgg aaaatacgtt atataaacga ctagagcaat tgatgaatga
    17941 acagttcatt cctctgaagc caaaatcaca acaagagatt ttagatgcac tcaatgaatc
    18001 aggaatcttc aaagaaaaca aaaatcgcta tttgaagtgc cttcaagcta ttcgtacaga
    18061 gcgattagac tatcaacaaa tcttaaaacg tctaaccgat gcgaaaattg tctatgctaa
    18121 agaatatgcg acattgctca tgcgtattca tgatgcctac gttaaagaac tacgtagcgc
    18181 aaatgaaatc gactttgacg atatgatttt gttggctact caactggtga aaacaggtga
    18241 gtttaaacct aaatggaaac atattttagt cgatgaattt caagatattt ctatggctcg
    18301 attggagtta ttgaaagaaa tttatactaa agggcctcga ccgatttgga ctgttgttgg
    18361 agatgactgg caatcaatct atcgtttctc tggcggtaaa ctagaagtta ctacgcgatt
    18421 taatgatatg gtcggctcac acacgctaag taaactagaa aaaacctacc gctataacaa
    18481 tagtattgct gacacagcag gtcaattcat tatgcaaaat cctgagcagt atcagaaaaa
    18541 tgttgtaacg catacaaagg tcgctgattc ttgtgttcat ttgtatgact ctcatgtcgt
    18601 aaaggatgaa aaatcagaag ccaatatcag tttaaaagcc tcagcaatat taaaactgat
    18661 acgtcaaaaa gcacctgaag ccactgtcgc aattttggct agataccgtt accttttaga
    18721 agatgcaaaa agtgtaatca aagataagaa tgttaaattt tggacgttcc acggctcaaa
    18781 agggttggaa gcagattact gcattttact tggtttcttc caaggaaaag tcggatttcc
    18841 caaccaaaat aaagaagaag ccgttgtaga agcattgctt cctatgctag acagttttcc
    18901 acactcagaa gaacgtaggt tattttatgt ggcattaacg cgtgcgaaaa aagaaagtta
    18961 tttgatcgca gatgcgaacg cgccatcaga atttatcaat gaattattat caccgaaata
    19021 caagatagat attgtgtcaa aacgattcca agaacgttat cggacaatct ttaaatgtaa
    19081 tgaatgtagc actggctatt tcgtgatgaa acaaggtaaa tttggtcagt tctattcttg
    19141 tacatcaggg gaagtatgcc gctcttcgcc acggatttgt gaaaaatgtg gccgtcctat
    19201 gaagctgcga gaaggtaaat ttggtcagtt ttggggatgc tcaggatatg gaatcaaagg
    19261 cgatcaatgt acgaatactc gtaagtattt tatgtaatat attattttgg aggattttgt
    19321 ggatttattt gaatcaaaaa aacaattaat agagttaatt aaaaagtacg atagtgataa
    19381 agaaatttat tcttcatcct catacaatga gtctcagtta agaactgact ttttagaccc
    19441 tttctttggt ttacttggat gggatataac taactcaaag aataaactca catctgaaag
    19501 agaagtgatt gttgaagaac cactaaaaga aaaagtttca gaaaatgtaa aaaaaccaga
    19561 ttatacattt agattcaatt ctcaaagaaa gttttttgtt gaagctaaaa agccaagtgt
    19621 caaaatcaag actgaccctt tacctgctca tcaggtaaga cgatatggct tcacagcaaa
    19681 atta
//
LOCUS       DANMBQ010000031        19477 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.031, whole genome shotgun sequence.
ACCESSION   DANMBQ010000031 DANMBQ010000000
VERSION     DANMBQ010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19477
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.031"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(355..1002)
                     /gene="rnt"
                     /locus_tag="PXE92_000987"
     CDS             complement(355..1002)
                     /gene="rnt"
                     /locus_tag="PXE92_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010130043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HDL5760252.1"
                     /translation="MEQTTEQIDYKLLKHRFRGYLPVVIDVETAGLNAQTDALLELAA
                     ITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNGIDIDNPLRGAVAENIAIPEM
                     FKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAIKRINAKRDPFHPFAMFDTATLAGF
                     MYGQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCAMVNRLKDLGGFPPLSD"
     gene            complement(1087..1494)
                     /gene="gloA"
                     /locus_tag="PXE92_000988"
     CDS             complement(1087..1494)
                     /gene="gloA"
                     /locus_tag="PXE92_000988"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HDL5760253.1"
                     /translation="MRILHTMLRVGDLERSIKFYTDVLGMRLLRRSENEQYKYSLAFL
                     GYADESESAVIELTYNWGVDKYELGTAYGHIALGVDDIYKTIEDVRAAGGKITREPGP
                     VLGGTTVIAFAEDPDGYKIEFIENKDAKAALGN"
     gene            1584..2399
                     /locus_tag="PXE92_000989"
     CDS             1584..2399
                     /locus_tag="PXE92_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760254.1"
                     /translation="MAHDHDSPSKLEISTHAALPMVLMLFIEMALNFYSAPKNSIFIS
                     PYLLAFFVTSLISFLVLWKGEICRGQASRLSFILPFLLIFAVGNFLYSIGFTPKHNPM
                     AVASIAAVFACLIYFRLPEDQTLYNTLMYCGLAISSIGIIQYLAIYWFELPSLFNGIR
                     ANNFAQVLLGILLAGWYLMLAKSRLDVFLKLLVKTALVVLILNYCWTAFVLYQHLQIM
                     PDMPLLSFIIYFAAQFVILLMLAWLLLGKNIKNPTAWTVATLLAILYPFANVV"
     gene            2403..3149
                     /locus_tag="PXE92_000990"
     CDS             2403..3149
                     /locus_tag="PXE92_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760255.1"
                     /translation="MKRALKFFGIATVLSVVAIYYFLMPSHYLATPINWILPKAWKVQ
                     LPQGLNLNWQGSSLAQFQLSYRDCPLLSADKTDLGWIEKNHLSVDKLDIDYRCLALFP
                     QNEHSNSDTSLNALLAVIPDGEATIHALNWKNLPTDFNPRLQRLFEQTAIKLSLSKGE
                     IQATAAQQAVKFAANFANGRLNADLSYQPNEKEQHNLRISAEIEDNFTQLPPTISAEY
                     DWQLSYEIIANKALQKGALFSVGKKMPHKS"
     gene            3335..5110
                     /locus_tag="PXE92_000991"
     CDS             3335..5110
                     /locus_tag="PXE92_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH domain-containing protein"
                     /protein_id="HDL5760256.1"
                     /translation="MPLKTAIRISLLSQNSWGKGNIVISNSDGEITEKGLNLPLRLTG
                     NIKHGNFILYSSVPLDFQGNFDDLSVKFLPSSLLRLTGKERYLTIEDLRFPLAGIKID
                     KHGIHGRLHAILRGQSPDFNNIEFHLDGQAQNFKAGALDFFQDPKDANAVKDSWKWRI
                     WGASILKAFNSKVNLSGRGQWHKQLVRLEELKGDLATVKLADTTISKITLNNTQAIRF
                     NVKKFTLDGAVMLQSPEIAFSYGGVLPKPRVNLAFDGEVEKLRFKGAVNTTELGPLKL
                     FARRQLSQDASQIIGKLYWPEQSAQGFQPLFPFRSQWVINNGTIRGETAFSAGSKNGL
                     IAGGHLAIRNGGLSLPNGEAKGIEFSLPYRYQNGRFHFGAKKPLDVKIAQIKLGDLAL
                     DNASMKLNGYYPYTKAKPLNLNQLSFDLFGGKLNVKRFALPQTELAYLNLERIDFEQI
                     LQFMQYQQIDLKGKANAILPFWLSGKPCYICDGLLTQAETSYLTFTPELLSEMQKSGY
                     TEQILLHLVDKSTINDFRSLINVGPKGDLVLDGKLKLSSNQNKSKVNLNYNHRENLFD
                     LWHLINYGSQFEQKLENYLYQKLER"
     gene            5128..5322
                     /locus_tag="PXE92_000992"
     CDS             5128..5322
                     /locus_tag="PXE92_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HDL5760257.1"
                     /translation="MKPATFYFAIFLLNLTACTPKVQLETPSEGITINMNVVVDHRID
                     VKMDEKSRAVITKSENKTKN"
     gene            complement(5319..5792)
                     /gene="folK"
                     /locus_tag="PXE92_000993"
     CDS             complement(5319..5792)
                     /gene="folK"
                     /locus_tag="PXE92_000993"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDL5760258.1"
                     /translation="MQTVYIALGSNLENPLEQLKQAVEKLKKFANEFEISPFYGSKPV
                     GPQDQPDYVNAVAKFSTDLSPTALLDKLQSIENEQGRVRVRRWGERTLDLDIILYGNQ
                     QIQTERLNVPHIEMKNREFVIVPMFDLTPDLVLPTGEKLADIYAQFKDHQMIIFS"
     gene            complement(5995..7326)
                     /gene="pcnB"
                     /locus_tag="PXE92_000994"
     CDS             complement(5995..7326)
                     /gene="pcnB"
                     /locus_tag="PXE92_000994"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HDL5760259.1"
                     /translation="MLHKKFAVNASQYRISPKDFPKNAISIVDKLQIAGYEAYIVGGC
                     IRDLLLEKKPKDFDIATNARPEEIQRIFGRQCRLIGRRFRLAHIVYGREIFEVATFRA
                     GHESHRNDKISKVSDEGMLLRDNVYGTLREDAERRDFTVNALYYDIKRNLIFDFFNGI
                     EDLRAGKLSLIGEPTIRYQEDPVRMLRAVRFMAKLDMFLDKATASPIRDMAVLLTNIP
                     AARLFDESLKLLQTGAGLKTYQLLREYELWQFLFPVLPAFFTAKGDSYAERMITKALN
                     STDERIADKLPVNPAFLFAALLWYPLREKMEQLKNEGGFNSYDAMMLAANDVLAESCN
                     AIALHRRHTSVIRDIWALQFQMMKRSGNRPQQTLEHVKFRAGFDLLVMRAEIEGGDLV
                     ELSAWWHEYQFSNEGQRTELLKSVRHLGNVPSEKKKTRRRRTFKKKPKVNG"
     gene            complement(7571..8017)
                     /gene="dksA"
                     /locus_tag="PXE92_000995"
     CDS             complement(7571..8017)
                     /gene="dksA"
                     /locus_tag="PXE92_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HDL5760260.1"
                     /translation="MTQAAKTSLGLLALAGVEPYELKKDEEYMNEAQREHFTKILKAW
                     HSQIMEEAERTKSQLQEDMTNFADPNDRASQEEEFSLELRNRDRERKLLKKIEQTLYK
                     IQEDEYGYCETCGVEIGIKRLEARPTADLCIDCKTLAEIREKQLGL"
     gene            complement(8267..9220)
                     /gene="thiB"
                     /locus_tag="PXE92_000996"
     CDS             complement(8267..9220)
                     /gene="thiB"
                     /locus_tag="PXE92_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HDL5760261.1"
                     /translation="MKFILSSLALLSASVYANQPTLTVYTYSSFASEYGPAPKLEQNF
                     EKECGCDVKFVPLDDSVTMFNRLRLEGAKTKADVVVGIDNFLQPEAEKSGLFAEFEAK
                     TKLETQQKIFFPYDTGSYAFIYDKEKLKNPPKSLKELVERQDLKVIYQDPRTSSVGRG
                     FLMWVNQVYGDEAPTAWKTLAKHTVTVGKGWSETYGAFLKGESDLVLSYTTSPLYHKW
                     HENTDKYVAAPFEEGHLVQVENAAIVKSSQQKALANQFLEFLHKPESQHIISYHNVMN
                     PVLTDGVDPAFAAMPTYKTIEFTPPTTETIQKWLADWSKSW"
     regulatory      complement(9264..9407)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            9691..10677
                     /locus_tag="PXE92_000997"
     CDS             9691..10677
                     /locus_tag="PXE92_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HDL5760262.1"
                     /translation="MSQLIRTLKGHIRDEIIKKGGWVNAHAHADRAFTMTPEKITVYQ
                     NANLQQKWDLVDEVKRNSSVEDYYRRFSQAIELMISQGVTAFGTFVDIDQVCEDRAII
                     AAHKAREVYKNDIILKFANQTLKGVIEPNAKKWFDIGSEMVDMIGGLPYRDELDYGKG
                     LEAMDILMDKAKSLGKMLHVHVDQFNSPKEKETEQLCDKSIEHGMQGRVVAIHGISIG
                     SHPKEYRKMLYQKMRDSQMMVIACPMAWIDSGRKEDLQPFHNALTPADELIPEGITVA
                     IGTDNICDYMVPLCEGDMWQELSLLSAGCRFTNLEEMANIASINGRKVLGLV"
     gene            complement(10731..11150)
                     /locus_tag="PXE92_000998"
     CDS             complement(10731..11150)
                     /locus_tag="PXE92_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HDL5760263.1"
                     /translation="MLGNILGSLASSVLSGNNQSTATQLIQNLLASQGGIEGLIAKFQ
                     QGGLDDVLRTWISSDEDNAPVSGEQISNVFGQENIQNVAQEAGVDAADASDLLAQFLP
                     KIVDTLTPNGNVEDLKNFDANDLLAQAAKGILGNLFK"
     gene            complement(11228..11983)
                     /gene="kdsB"
                     /locus_tag="PXE92_000999"
     CDS             complement(11228..11983)
                     /gene="kdsB"
                     /locus_tag="PXE92_000999"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HDL5760264.1"
                     /translation="MKFTVIIPARYASSRLPRKPLLDIAGKPMIQHVWEKAQLAGASR
                     VIIATDHPEIEALAQSFGAEVCMTSEKHNSGTERLAEVIEKMQIADSEIIVNIQGDEP
                     LIPPVIVTQVAQNLDAYQVNMATLGVKLATREELFNPNAVKVVADKNGMALYFSRASI
                     PFARDSFPDCDDSFVAAQGYLRHIGIYAYRAGFVKQYVAWQPTQLEQLESLEQLRALW
                     HGEKIHIEPAKEAPQVGVDTPEDLERVRAILAR"
     gene            complement(11993..12946)
                     /gene="trxB"
                     /locus_tag="PXE92_001000"
     CDS             complement(11993..12946)
                     /gene="trxB"
                     /locus_tag="PXE92_001000"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDL5760265.1"
                     /translation="MTTKHTKLLILGSGPAGYTAAVYAARANLNPVLVTGMQQGGQLT
                     TTDEIENWPGEFEQITGTELMNKMLKHAEKFETEIVFDHIHSVDLSKRPFTLNGDLYT
                     FTCDALIIATGASAKYLGLPSEEHFKGKGVSACATCDGFFYRNKPVAVVGGGNTAVEE
                     ALYLANLASEVHLIHRRDSFRAEKILLGRLQKRIEEGKIILHTDRTVDEVLGDNMGVT
                     GLRLKSTKEELSEEIKVDGFFVAIGHAPNTAMFEGQLELENGYIKVKSGLEGNATATS
                     VEGVFAAGDVMDHNYRQAITSAGTGCMAALDAERFLDAQEA"
     gene            13113..14183
                     /gene="dhaK"
                     /locus_tag="PXE92_001001"
     CDS             13113..14183
                     /gene="dhaK"
                     /locus_tag="PXE92_001001"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HDL5760266.1"
                     /translation="MKKLINSIETVLDEQLSGFVKAHSDLTLNTEPVYIYRTTPSNQP
                     KVALISGGGSGHEPMHAGFIGKGMLDGACPGAIFTSPTPDQMFECGLAVDRGEGVLLI
                     IKNYTGDVLNFETATELLADSGVKVATVLVDDDVAVKDSLYTAGRRGVANTVLIEKLL
                     GAAADKGYNLSELAKLGHQLNNNGHSIGIALSACTVPAAGKPSFTLAENEMEFGVGIH
                     GEPGIERRPFENLDSTVKQMFETLIAHGDYQRKIRHWNTQTQQWDEIEESKVALKKGD
                     RVIALVNNLGAVPLSELYAVYDALEKECQTFGLSIERSLVGSYCTSLDMQGISITLLK
                     VDEDILKLWDAPVNTPAMRWGE"
     gene            14204..14830
                     /gene="dhaL"
                     /locus_tag="PXE92_001002"
     CDS             14204..14830
                     /gene="dhaL"
                     /locus_tag="PXE92_001002"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase ADP-binding subunit
                     DhaL"
                     /protein_id="HDL5760267.1"
                     /translation="MTISKQQILKWLENCQQVMTEKRDYLTELDTVIGDGDHGLNMQR
                     GFSKALEKAHTVQDKDIGTLLKTVGMTLLSQVGGASGPLYGSFFIKAAQGATGKEQLS
                     FNELLALLQQGAEAIVQRGHAQVGDKTMCDLWLPLLEDLAQADSTQPIAQILLQAVEK
                     AENFANQTAPLMAKKGRASYLGERSIGHKDPGATSSYYIFKALAEALQ"
     gene            14840..15247
                     /gene="dhaM"
                     /locus_tag="PXE92_001003"
     CDS             14840..15247
                     /gene="dhaM"
                     /locus_tag="PXE92_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HDL5760268.1"
                     /translation="MVNLVIVSHSAKLAEGVGEILAQMAQGGCKIALAGGIEDTSNPI
                     GTDAVKIMQAIESVFSPDGVIVFVDLGSAILSTQTAIDLLEPELAEKVIISYAPLVEG
                     AFAAVVAASAGDSLEAVLNEANEAAALKQEQAN"
     gene            complement(15287..16132)
                     /locus_tag="PXE92_001004"
     CDS             complement(15287..16132)
                     /locus_tag="PXE92_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone YbbN"
                     /protein_id="HDL5760269.1"
                     /translation="MDYFVNVNEQNFSEVWAAAAQVPTVFHFISPREVASLEMDALLR
                     RISDENPNQFLLATVNCDEQQALAAQFRIQQIPTLYLFAGGQPIDAIQGAVSEQELRI
                     RLANILPKEEELKFQQALELLQDQRYTEALPLLKSAWEMTDKKNSDFALLYAETYIAM
                     KSVEEAREILKAIPIQDRDSRWHGLQAQIELLEQASESPELQQLQADYANSKTPEIAI
                     KLANQLHQAHKNEEALTLLFDWLKSDLNVANGEVKSQFLAILSALGTDPIVPKFRRQL
                     YSLLY"
     gene            complement(16176..16502)
                     /gene="glpE"
                     /locus_tag="PXE92_001005"
     CDS             complement(16176..16502)
                     /gene="glpE"
                     /locus_tag="PXE92_001005"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HDL5760270.1"
                     /translation="METTFKEISPQQAWELIENEGAVLADVRDARRYVYSHPQDAFHL
                     TNQSYGKFLDEVDYDEPVVVICYHGVSSQSTAQFLIEQGFENVYSVKGGFEAWERNGL
                     PIETSY"
     gene            16653..17111
                     /gene="exbB"
                     /locus_tag="PXE92_001006"
     CDS             16653..17111
                     /gene="exbB"
                     /locus_tag="PXE92_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HDL5760271.1"
                     /translation="MEQLFQFLEHHTDFVILGLLGLLSVICLWKAIERIMFYSKVDIS
                     KYDTLEELDIDLTHNLTTISTIGSNAPYIGLLGTVVGILLTFYHLGQSGGDIDAASIM
                     VNLSLALKATAVGILVAIIAMVFYNGFGRKVEENKLKWLALQSKKPHQAV"
     gene            17148..17585
                     /gene="exbD"
                     /locus_tag="PXE92_001007"
     CDS             17148..17585
                     /gene="exbD"
                     /locus_tag="PXE92_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HDL5760272.1"
                     /translation="MKKFDEINIIPFIDIMLVLLAIVLVTASFISQGKIQVNVPKAST
                     TQPMKADDLAKLLTITENNEFFFNDQAITKEQLIAEVATWDKSQKVSLKVDGAVAFEK
                     FVELTDILSANEIKNVAIITKKETAPAPSSTPGSPAQVPAVAP"
     gene            17601..18512
                     /locus_tag="PXE92_001008"
     CDS             17601..18512
                     /locus_tag="PXE92_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDL5760273.1"
                     /translation="MKKKHSRIGLLASLAIHTALIGGTFAWLHNHKVEKIAEQNSLSM
                     EMVAALLEQPQVAVAPDPITEEVKEIEPEKAEVPPEPKLTPEPTPEPEAIPDPTLNPK
                     KEKPKEEKRKERHHHKHKHRHKEKREELQEQEKPKDKPKERPKHHHKHIKALERGPEI
                     KQGIVAKAIPNAAEGEKVVAGVVGGQKNGSPNSTSTTGSANTGASSGNASELAAYKVA
                     LQRALQRKANNSYPQREKMMRKTGTVTIKFTITSSGSITNVSVLNSSGNSNLDNAAVR
                     SAEGLSMPPPPAGFPPTVTVPVRFALE"
     gene            complement(18581..19462)
                     /gene="cysZ"
                     /locus_tag="PXE92_001009"
     CDS             complement(18581..19462)
                     /gene="cysZ"
                     /locus_tag="PXE92_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HDL5760274.1"
                     /translation="MSSVFSEPQNQVGLGFHYFIYGWRLLLQRQFLPFVIFPILINTV
                     LMVGLIWGFFANIGGLLDMLLPSWLEWLSFVLIPLIFLMILVGFYFAFTTLANFVAAP
                     FNALLAEKVELQLTGEPLGDMSFGAMLKDVPRMLKREWQKMMYSIPRLIALFVLGFLP
                     VVGQTVAPVLTFIFGAWLIAIQYCDYPFDNHKISFQRMRNALSQSRTLNFTFGALVSL
                     FTMIPFVNLVVMPVAVCGATALWVKEYRNFFLNNQTGEFSKADYTFTKVNSTSLSTET
                     RTGEVSPNVRNGDIRKQ"
BASE COUNT         5816 a         4207 c         3845 g         5609 t
ORIGIN      
        1 tgaactttat tagtttcagg atcatgttaa tcatttcaag gtggaaacgc ttgtttttag
       61 attagataaa aaataaggag ggtcgaaata gcgggtatac agaaagtgct tatagccaaa
      121 aaatagtcta ttgttattga atacaagcgg tctattttgt cacatttttg ccaaatttgg
      181 ttaaaaaacc aaccgcttgt aatcttaact gaagatagat agttttttat tttttctaca
      241 actctacagg gctggattta ttgcagaatg gtacttgcca ctaactatca tcactcccag
      301 gataatttat agaaacaata cgagaaattg tgttaataaa tgaaatgaat aacgttaatc
      361 cgataatggt gggaaaccac ctaaatcttt taaacgattg accattgcac agaaaagttc
      421 tgccgtgcgc tcggtatcat acaacgcaga atgcgcttgc ttaccgtcaa acgggatttt
      481 tgccacctgg caggctttta ccaacacggt ttgcccatac ataaaaccgg caagggtggc
      541 ggtgtcaaac atcgcgaaag ggtgaaaggg atctcgcttg gcattaattc gtttaatcgc
      601 agcctgtaaa aagccctgat cgaacgctgc attgtgggca acaatcaccg cccgttggca
      661 gccttgctcc ttcattgctt tgcgaaccat tttgaacatt tccggaatcg caatattctc
      721 cgcaaccgct cctcttagag ggttgtcaat atcaatgccg ttgaatttta atgactcagg
      781 gttaatattc gccccttcaa atggcgcaat atgaaaatgg cattgttgat ccggcactag
      841 ataaccttgc tcgtccattt ttaaagtaat tgccgccaat tccaataagg catcagtttg
      901 ggcatttaag cctgctgttt ccacatcaat cacaaccggt aaatagccac gaaaacgatg
      961 ctttaataat ttataatcta tttgttccgt tgtctgttcc atttatctat caacctaaaa
     1021 tacaagcggt ctgatttgca aaatttttta caaatccgac cgcttgaata ttcatattcg
     1081 caaaaattag tttcctaacg ctgctttcgc atctttattc tcaataaatt cgattttata
     1141 accgtccgga tcttcagcaa aggcaatcac agttgttcca cccaataccg ggcccggctc
     1201 acgggtaatt ttaccgcctg ccgcacgcac atcttcaatg gttttgtaaa tatcatctac
     1261 gcctaacgca atatggccat aagccgtgcc tagctcatat ttatccacac cccagttata
     1321 agtcagctca atcaccgcac tttcgctttc atcggcatag cctaaaaatg ctaacgaata
     1381 cttatactgc tcgttctcgc ttctacgtaa cagacgcata cctaacacat cggtataaaa
     1441 cttaattgag cgctctaaat ctccaactcg taacattgta tgtaaaattc gcatattttc
     1501 ttccccctga agttaaaaaa cgacccctat tatggcataa tcttggctta aaatcatttt
     1561 ctttatacct tttgggatta tctatggctc acgatcacga ttcgccgtca aaacttgaaa
     1621 tttcaaccca cgctgcactg ccaatggtat taatgctgtt tattgaaatg gctcttaact
     1681 tctactctgc accgaaaaat tcaattttta tttctcctta cttattggcg tttttcgtga
     1741 cctcattaat cagtttttta gtgctatgga aaggcgaaat ctgccgaggg caagccagcc
     1801 gtttaagctt tattttaccc tttttactta ttttcgccgt agggaatttc ctttattcca
     1861 taggctttac gccaaagcat aacccaatgg cggtggcaag cattgctgca gtttttgcct
     1921 gcttaatcta cttccgcctg ccggaagatc aaaccttata taacacattg atgtattgtg
     1981 gtttggctat atcaagtatt ggtattatcc aatatttagc catttattgg tttgaactgc
     2041 cttcattgtt taacgggatt cgagccaaca atttcgccca agtgctgtta ggcattttat
     2101 tagccggctg gtatttaatg ttagcgaaaa gccgtttaga tgttttcctc aaactgttgg
     2161 tgaaaaccgc ccttgtggtg ctgattctca attattgctg gacagctttt gtgctttatc
     2221 aacatctaca aattatgccg gatatgccat tgctttcatt tatcatctat tttgcagcac
     2281 aatttgtgat tttattgatg ttggcgtggt tattacttgg aaaaaacatc aaaaatccga
     2341 ccgcttggac agttgctacg ctgttagcga ttttataccc tttcgctaat gtagtctgat
     2401 ttatgaaacg ggcattaaaa tttttcggca ttgcaaccgt tctatctgtt gtggcaatct
     2461 actatttttt aatgcccagc cactatcttg ccacgccgat taactggatt ttgccgaaag
     2521 cgtggaaagt tcaactccca caaggcttaa acctgaattg gcaaggctca tcacttgctc
     2581 aatttcaact ctcttatcga gattgcccgc tactaagtgc cgataaaacc gatttgggtt
     2641 ggattgagaa aaaccatctt tctgtcgata aattggatat tgattaccgc tgccttgcct
     2701 tgtttccaca aaatgaacac agcaattccg acacttcact caacgcattg ctggcggtca
     2761 ttcctgatgg cgaagcgact atccacgccc ttaactggaa aaatttgcct accgatttca
     2821 acccaagact tcagcggctt tttgagcaaa cagctattaa actctcactt tcaaaaggtg
     2881 aaattcaggc aactgccgct caacaagcgg tcaaatttgc agcaaatttt gcaaatgggc
     2941 ggttgaatgc cgatttatca tatcaaccga atgaaaaaga acagcataat cttaggattt
     3001 cagcagaaat tgaggacaat tttacccaac tgccgcccac tatttccgct gaatatgatt
     3061 ggcaattatc ttatgaaatc atcgccaata aagccttgca aaagggcgct ctattctcag
     3121 ttggcaaaaa aatgccgcac aaaagttaga aggcaactgg caggttgaac ttgccgaaag
     3181 tgaaaataac aaactggatt tcccttttct gtttgatggg gaaagcctag aaattcaaca
     3241 agggcggttt gattggcact ttacccaaca atttccactg caagggtttg ttagcaccaa
     3301 gctcacaccg aaatcattca accaaaacgg ctttttgcca ctcaaaacgg cgattcgtat
     3361 cagcctgctt tcccaaaaca gttggggtaa aggcaatatt gtaatctcca attcagacgg
     3421 agaaataacc gaaaaagggc tgaatttacc gcttcgtttg acgggtaata tcaaacacgg
     3481 caattttatt ctttacagta gcgtgccact ggattttcaa ggtaattttg acgatttaag
     3541 cgtaaaattt ttgcctagct ccctacttcg tttgaccgga aaagagcggt atttaaccat
     3601 tgaagattta cgttttccac ttgccggaat taaaattgac aagcacggta ttcacggacg
     3661 actgcacgca attttaagag ggcaaagccc tgattttaac aatatcgagt tccatttaga
     3721 cggacaagca caaaatttta aggctggagc cttagatttt ttccaagatc ctaaagatgc
     3781 taacgcagta aaagacagtt ggaaatggcg aatttgggga gcatctatcc tcaaagcctt
     3841 caacagtaaa gtgaatttaa gcggcagagg gcaatggcat aaacagcttg tgcggttgga
     3901 agaactcaaa ggcgatttag ccaccgtaaa gttagcagat acaaccattt ctaaaatcac
     3961 gcttaacaat acgcaagcta ttcgatttaa tgtcaaaaaa ttcacccttg acggagcggt
     4021 aatgttgcaa tcacctgaga ttgccttcag ttatggcggt gtgctaccca aaccacgagt
     4081 gaatctcgcc tttgatggtg aagtcgaaaa actacgtttt aaaggagcgg tgaataccac
     4141 cgaactcggc ccactcaaac tgttcgcccg ccgccaatta agccaagatg ccagccaaat
     4201 tatcggcaaa ctttattggc cggagcaatc tgctcaaggc ttccagccgc tttttccgtt
     4261 tcgtagccaa tgggtgatca acaacggtac aattcggggc gaaacggcgt ttagtgccgg
     4321 cagtaaaaac gggctgattg ccggtgggca tttagccatt cgtaacggcg gtttatcttt
     4381 acctaatggc gaagcaaaag ggattgaatt ttcgcttccc taccgctacc aaaacggacg
     4441 ctttcatttc ggagccaaaa aaccgcttga tgtaaaaatt gcccaaatca aactggggga
     4501 tttagcatta gataacgctt caatgaaact caacggttac tacccttata ccaaagctaa
     4561 gccattgaat ttaaatcaat tatcctttga tttgtttggc ggtaaactga atgtaaaacg
     4621 ctttgcctta ccacaaaccg aactggctta cctgaattta gagcggattg actttgagca
     4681 aattttgcaa tttatgcaat atcagcaaat tgatctcaaa ggcaaagcca acgctatctt
     4741 gccgttttgg ttaagcggaa aaccttgcta tatttgcgat ggcttactga cacaggcgga
     4801 aacttcctat ttaaccttta cccctgaatt gttgtcagaa atgcagaaaa gtggttacac
     4861 cgagcaaatt ttgttacatt tagtagataa aagcacgatt aacgattttc gcagtctgat
     4921 taatgtcggg ccgaaaggcg atttagtatt agacggaaaa ttaaaattat cttccaatca
     4981 aaataaatca aaagtgaatt taaactataa tcaccgagaa aatctgtttg atttgtggca
     5041 cttaattaac tatggctcac aatttgaaca aaaattagaa aattacctct atcaaaaact
     5101 ggaacgatga taaagaatgg aataaatatg aaaccggcca cattttattt tgcaatattt
     5161 ttactgaatt tgaccgcttg tacgccgaaa gtacagcttg aaacgccaag tgaaggcatt
     5221 acgattaata tgaatgtggt cgttgatcac cgcattgatg tgaagatgga cgagaaatcc
     5281 cgagcggtga tcaccaaaag tgagaacaaa acgaaaaatt agctgaagat aatcatttga
     5341 tgatctttaa attgtgcata aatatcggct aatttttccc ctgtcggtag tactaaatca
     5401 ggcgttaaat caaacatcgg cacaatcaca aattcccgat ttttcatctc gatatgcggc
     5461 acgttcaaac gctcggtttg aatttgctga ttgccgtaca aaataatatc cagatctaaa
     5521 gttctctccc cccaacggcg tacacgcact cttccctgct cattttcaat gctttgcaat
     5581 ttatccagca atgcagtggg cgataggtcg gtactaaatt ttgctaccgc attgacataa
     5641 tcaggctgat cttgcggtcc gacaggcttt gagccgtaga acgggctgat ttcaaactca
     5701 tttgcaaatt tttttaattt ttcgaccgct tgtttaagct gctcaagcgg attctcaagg
     5761 tttgatccta aggcgatata gacggtttgc ataaaatata cttacaaata taacaataaa
     5821 ctctctcccc ttgtgggaga gagaccgctt atgagcgttc agcgaaataa gcagagagag
     5881 gggacaagcg gtaactttta ttaaattttt tacacatttc ccctctccct gatttttctt
     5941 ctgaacgaag aaaaatcgct ccctctccca caaggggaga gggaaatata ttaattatcc
     6001 atttactttc ggttttttct taaaggttct acggcggcgt gttttctttt tctcgctagg
     6061 cacattgcct aaatgacgaa ccgatttcag caattcagta cgctgacctt cattgctaaa
     6121 ttggtattcg tgccaccaag cggaaagttc gaccaaatcg ccgccttcaa tttctgcacg
     6181 catcactaat aaatcaaacc ctgcacggaa tttgacgtgt tcaagggttt gttgcggtcg
     6241 gttgccactt cgtttcatca tctgaaattg caatgcccaa atatctcgaa tgactgaagt
     6301 gtgtctgcgg tgcaacgcaa tcgcgttgca actttccgcc agcacatcat ttgctgccag
     6361 catcattgca tcgtagctgt tgaagccacc ttcgttttta agctgctcca ttttctcccg
     6421 gagcggatac caaagtagtg cagcaaataa aaacgcagga tttaccggta atttatcggc
     6481 aattcgctca tcagttgaat ttaacgcttt ggtaatcatt ctttcggcat aggaatcacc
     6541 tttggcagta aaaaatgccg gcaataccgg aaacaagaat tgccatagtt catattcacg
     6601 caaaagctga taagttttca gccctgcacc ggtttgtaat aatttgagtg attcgtcaaa
     6661 caaacgggct gccggaatgt tggttaacaa caccgccata tcccgaattg gggaggccgt
     6721 ggctttatcc aagaacatat ccaacttcgc cataaaacga acggctcgca acattctcac
     6781 cggatcttct tggtaacgaa tagtaggctc tccgataagc gaaagtttac ctgctcgtaa
     6841 gtcttcaata ccgttgaaga aatcaaaaat aagattgcgt tttatatcgt aatataaggc
     6901 gtttacggtg aaatcacggc gctctgcatc ttcacggagc gtgccgtaaa cattatcacg
     6961 cagtagcatt ccttcatcgc tgactttaga aattttgtca ttgcgatgag attcgtgtcc
     7021 tgcacggaaa gtcgccactt caaaaatttc acgcccgtaa acaatgtgtg ccaaacggaa
     7081 acgacgtccg attaatcggc attgcctacc aaaaatacgc tgaatttctt caggtctcgc
     7141 attagtcgca atatcgaaat ctttaggctt tttctccaag agtagatctc gaatacagcc
     7201 acccacaata taagcttcat aaccggcaat ctgcaattta tcgacaatcg aaatcgcatt
     7261 tttaggaaaa tccttcgggc taattctata ttggctggca ttcaccgcaa atttcttgtg
     7321 taacaaatgg gagggaggat tatcttgttg tttcttccca cctctataag tcttttggtc
     7381 cgttaagttc ggggctgggc gtttagaacg ggaagttttg ggttctcttt ccgctctttt
     7441 ttcactctct accttttcat ttttctgagc cgacttttta ggcttggaaa ataatgattt
     7501 aatataatta aaaataatac acctctaaat agtaaatgcc tcttaaaaaa gaggcaccct
     7561 gtaaagttga ttataagcct agctgctttt ctcgaatttc agctaaagtt ttacagtcaa
     7621 tacataaatc agctgttggg cgtgcttcta aacgtttaat cccaatttct acgccacagg
     7681 tttcgcaata accatattca tcttcttgga ttttatacaa ggtttgctca atttttttca
     7741 ataatttgcg ttcacgatca cggttacgaa gctctaaact gaactcttct tcttgactgg
     7801 ctcggtcgtt cggatcggca aagttagtca tatcttcttg aagctggctt ttggtacgct
     7861 ccgcttcttc cataatttga ctgtgccacg ctttcagaat tttggtgaaa tgctcacgtt
     7921 gagcttcatt catatattct tcgtcttttt taagctcata aggctcaacg cctgctaatg
     7981 ctaataaacc gagtgaggtt ttagccgctt gagtcataga tatttactcc ttgttccctg
     8041 tttattggaa gttttattgt taaaattatt gcccgaatac agactaactt ccttgtaacc
     8101 gcactatacg aaaaaatcaa catcttcggg ttttaaataa tggcggctat aaataacaca
     8161 aaaacgactc attaatcaaa tgaatttgca aaaattttgc attcaaattg atttgattgc
     8221 acaaaaaaat agccgaacat ccattcggct atttttcaaa cactttttac cagctctttg
     8281 accaatcggc taaccatttt tggatagttt cagtagtcgg tggcgtaaat tcaatggttt
     8341 tataggttgg cattgccgca aaagccggat caacgccgtc ggttaaaacc ggattcatta
     8401 cgttgtggta agaaataata tgttgcgatt ccggtttgtg caaaaattca agaaattgat
     8461 ttgccaatgc tttttgttgg ctgcttttga caatagccgc attttctact tgcaccaaat
     8521 gcccttcctc aaacggagca gccacatatt tatcggtgtt ttcgtgccac ttatgatata
     8581 aaggcgatgt agtatagctt agtaccaaat ccgactcgcc ttttaagaac gctccataag
     8641 tttcagacca acctttgcct accgttaccg tatgttttgc caatgttttc caagcagttg
     8701 gagcttcatc gccatacact tgatttaccc acattaagaa gccccgccca acgctgctgg
     8761 tacgtgggtc ttggtaaatc acttttaaat cttggcgttc caccaactct tttaaacttt
     8821 ttggtggatt tttcagcttc tctttatcgt aaataaaagc ataagaaccc gtgtcataag
     8881 ggaagaaaat tttctgttgg gtttctaatt tggtctttgc ttcaaactcg gcaaacaagc
     8941 cacttttttc ggcttcaggt tgcaggaaat tatcaatacc gaccaccaca tcagctttgg
     9001 tttttgctcc ctccaaacgc aagcggttga acatcgttac gctatcgtca agcggaacaa
     9061 atttgacatc acagccacac tctttctcaa aattctgctc taatttagga gcaggtccat
     9121 attccgaagc aaacgagctg taagtgtaaa cggttaaggt cggttgattg gcataaacac
     9181 ttgcacttaa taacgcaagt gaagagagga taaatttcat aacaattcct tctaaattaa
     9241 atgaatagaa ggatttaaga aaggcaagtt gctatctcaa atccctacgc tgatattaat
     9301 cagatcaggt tctatgggta tttctcagcc acaagcggtt aaatttcggc aaaaatttgc
     9361 aaatttttac gcaaaaacaa ccgcttgttg caccccaatg agaacggctt cattgtaaaa
     9421 agtttgcagg cagatttcaa ccaaagcaaa cgtttgctat ttgtattaaa aatccgtata
     9481 ctaccgccct agtccaaaca aggaactaga aatgaattgc acaacatcgg ttaaatcaaa
     9541 ttcccaacag ctacgcttca actttagagg cgtagctgtt tttctattca tttcaaacca
     9601 ttcaaaatcg ctgttatagc gatttttttt cgcacgcttg caattaccgc aagcggttga
     9661 gccacattaa cagagagaaa aggaataaaa atgagccaat tgattcgtac cctaaaagga
     9721 catattcgtg atgaaatcat caaaaaaggc ggttgggtaa atgcacacgc ccacgcagat
     9781 cgtgcattta cgatgacgcc tgaaaaaatc accgtttacc aaaatgcgaa tctacagcaa
     9841 aaatgggatt tggtcgatga ggtaaaacgt aattcaagcg tagaagatta ctaccgccgc
     9901 ttttcccaag cgattgaatt gatgatttca caaggggtaa cggcatttgg tacttttgtg
     9961 gatatcgacc aagtatgtga agacagagcc attattgccg ctcacaaagc ccgtgaagta
    10021 tataaaaacg acatcatctt gaaatttgct aaccaaacgt tgaaaggcgt gattgaaccc
    10081 aatgcgaaaa agtggttcga tatcggctcg gaaatggtgg atatgattgg tggcttgcct
    10141 taccgtgacg aactggatta cggcaaaggc ttggaagcaa tggatatttt aatggataaa
    10201 gccaaatcgc tcggcaaaat gctccacgtc cacgttgatc aatttaactc acctaaagaa
    10261 aaagagaccg aacaactgtg tgataaatcg attgagcatg gtatgcaagg gcgagtggtt
    10321 gccattcacg ggatttccat cggctcgcac ccgaaagaat atcgaaaaat gctttaccaa
    10381 aaaatgcgtg atagccaaat gatggtcatt gcctgtccga tggcgtggat tgatagcgga
    10441 cgtaaggaag atttacaacc gttccataac gctttaaccc ctgctgatga actcattcct
    10501 gaaggcatta ctgttgctat cggcacagat aatatctgtg attatatggt accgctttgc
    10561 gagggcgata tgtggcaaga actcagcctt ttatcagcag gctgtcgttt tactaaccta
    10621 gaagaaatgg caaatattgc cagtatcaat ggtcgaaaag tactgggttt agtctaactg
    10681 aataaacgaa aggcgaaccc taggttcgcc tttaataaca gcataaccga ttatttaaac
    10741 aagttaccca aaatcccttt tgccgcttga gctaataagt catttgcatc aaagtttttt
    10801 aagtcttcaa cattaccatt cggggttaaa gtatccacga tttttggcaa gaactgggct
    10861 aataaatcgc tcgcatcagc agcatcaaca cccgcttctt gagccacatt ttgaatgttt
    10921 tcttgcccga acacattact gatttgttcg cccgaaacag gtgcattgtc ttcatcgctg
    10981 ctgatccaag tgcgtaacac atcatctaat ccgccttgtt ggaatttggc aatcagccct
    11041 tcaatcccac cttgtgaggc gagtaaattt tgaattaatt gagttgcagt tgattggtta
    11101 ttgccactca atactgaaga agccaatgaa cctaaaatat ttcctaacat aatttctcct
    11161 atgcaagcgg tacaattttg cgaaaatttt gcaaaaaaac agcaaacttc gaccgcttgt
    11221 aatcacttta acgagctaaa atggctcgca ctctttccaa atcttccggc gtatccaccc
    11281 ccacttgcgg ggcttctttc gccggttcga tatgaatttt ttcaccgtgc cataaggctc
    11341 ttagttgctc aagggactca agctgttcta attgtgtcgg ctgccacgcc acatattgtt
    11401 tcacaaaacc ggctcggtaa gcgtaaatgc cgatatggcg taaataacct tgagcggcaa
    11461 caaaactgtc atcacaatcc ggaaaactgt ctctggcaaa cggaatgctg gctcgggaaa
    11521 aataaagtgc cattccgttt ttgtctgcca ccactttcac cgcatttggg ttaaatagct
    11581 cttctcgggt cgctaatttc acaccgagtg ttgccatatt gacttgataa gcatctaaat
    11641 tttgagctac ctgagtaaca attaccggtg gaatcagcgg ttcatcaccc tgaatattca
    11701 caataatttc gctgtcggca atctgcattt tttcgatcac ttccgccaaa cgctcagtgc
    11761 cggaattgtg tttttccgaa gtcatacaga cttccgcccc aaaagattga gcgagggctt
    11821 caatttcagg gtgatcggtg gcaataatca cacggcttgc accggcaagc tgagcttttt
    11881 cccaaacgtg ttgaatcatc ggtttgcctg caatatccaa caacggctta cgaggcaaac
    11941 ggctggaagc gtaacgagca ggaataatta cagtgaattt cataggctat ccttatgctt
    12001 cttgagcatc taagaaacgt tctgcatcca gggctgccat acaacctgtg ccggcagagg
    12061 taatcgcttg gcgatagtta tgatccatca catcaccggc agcaaatacg ccttccacag
    12121 aagtggcagt agcattgcct tccaaacctg atttcacttt aatgtagccg ttttcaagtt
    12181 ctaattgacc ttcaaacatt gccgtattcg gtgcgtgccc aatcgccaca aagaaaccat
    12241 caaccttaat ttcttcgctc aattcttctt tggttgattt taaacgtaag ccggtaacgc
    12301 ccatattatc gcctaacacc tcatcaaccg tacggtctgt gtgcagaata attttgcctt
    12361 cttcaatacg tttttgcaga cgaccaagca agattttttc agcacggaag ctatcacggc
    12421 ggtgaattaa atgcacttca cttgccaaat ttgccaaata aagtgcttct tccacagcag
    12481 tattcccacc accgactacc gcaaccggtt tattgcgata gaagaaacca tcacaagttg
    12541 cacaagccga cacgcctttg cctttgaaat gctcttcaga aggcaaacct aaatatttcg
    12601 ccgacgcacc ggtggcaata attaacgcat cacaggtgaa agtgtataaa tctccgttta
    12661 gcgtgaatgg gcgtttagat aaatccactg aatgaatatg atcaaacacg atttcagttt
    12721 caaatttttc agcgtgcttg agcattttgt tcattaactc tgtgccggta atttgttcaa
    12781 attcccccgg ccagttctcg atttcatcgg ttgtagtgag ctgtccgcct tgttgcatac
    12841 cggtgactaa aaccgggttt agattggcac gggcggcata aacagcagcg gtataaccgg
    12901 caggccctga gcctaaaatt aaaagtttgg tgtgtttagt ggtcataatg aatcctctga
    12961 ataaatatta atgtttattt tagcctaaat ttcagttcaa ctctattttc gttttcgctc
    13021 aacttttttc aattttgtga caaagttaac agaaatccga ctgtgtttct tgtaaattgt
    13081 gacagtctaa ttcatttaaa aggggcaaaa agatgaaaaa attaattaat tcaatagaaa
    13141 ccgtcttaga tgagcaactt tctggttttg tgaaagcaca ttctgattta acacttaaca
    13201 cagaacctgt ctatatttac cgcacaacgc caagtaatca acctaaagta gcccttattt
    13261 ccggtggtgg gagtgggcac gagccaatgc acgccggttt tatcggtaaa ggaatgttag
    13321 acggagcttg ccccggagca atctttacat ctccaacgcc ggatcaaatg tttgaatgcg
    13381 gtttagcggt tgatcgtggc gagggtgtat tgctaattat taaaaactat accggtgatg
    13441 tgctgaattt tgaaacagcc accgagctac ttgcagatag cggtgtaaaa gtcgcaaccg
    13501 tgttggttga tgatgatgtg gcagtcaaag acagtttata tactgccggc cgccgcggtg
    13561 ttgcaaatac agtattaatt gaaaagctgt taggagctgc agcggataaa ggctataact
    13621 tatccgaatt agccaaatta gggcatcagt taaacaataa cgggcattct atcggaattg
    13681 ccttatctgc ttgtactgtg ccggctgccg gtaagccatc atttacttta gctgaaaatg
    13741 agatggaatt tggggtaggt attcacggag aaccgggcat tgaacgtcgc ccctttgaaa
    13801 atctggatag taccgtgaaa caaatgtttg agaccttaat tgctcacggc gattatcaac
    13861 gtaaaattcg ccattggaat acacaaaccc aacaatggga cgaaatcgaa gaaagcaaag
    13921 tggcattgaa aaaaggtgat cgtgttattg ctttagttaa taacttagga gcagtgccac
    13981 tatccgaact ttatgctgtt tatgatgcgt tagaaaaaga gtgccaaact ttcggcttaa
    14041 gcattgaacg cagtcttgtt ggatcatatt gcacctcgct ggacatgcaa ggtatctcta
    14101 tcacattact gaaagttgat gaggatattc tcaaactatg ggatgctccg gtaaatacac
    14161 cggcaatgcg ttggggtgaa taattagatt gaaaggataa gttatgacaa tatcaaaaca
    14221 acagatctta aaatggcttg aaaattgcca acaggtaatg actgaaaaac gggattattt
    14281 aaccgaattg gataccgtta ttggcgatgg cgatcacggt ttaaatatgc agcgtggatt
    14341 tagtaaagca cttgaaaaag cccataccgt gcaagataaa gatatcggca ccctgcttaa
    14401 aaccgttgga atgacattat tatcgcaagt agggggagcg agcggccctc tctatggttc
    14461 attttttatt aaagcggctc aaggtgctac aggcaaagag caactgagct ttaacgagtt
    14521 actggcactt ctacagcaag gagcagaagc tatcgtacaa cgtggacacg cacaagttgg
    14581 cgataaaacg atgtgtgatt tatggctgcc attactcgaa gacttagctc aagccgatag
    14641 cactcaacca attgctcaaa tcttattaca agcggtcgaa aaagcagaaa attttgcaaa
    14701 tcaaaccgct ccattaatgg cgaaaaaagg gcgtgccagt tacttgggcg aacgcagtat
    14761 cgggcataaa gatccgggag caacgtccag ctactatatt tttaaagcct tagctgaagc
    14821 attacagtag gaggggtaaa tggttaattt agtgattgtt tcacatagtg ctaaactggc
    14881 ggaaggcgtg ggggaaattt tggctcaaat ggcacagggg ggctgtaaaa tcgcccttgc
    14941 cggcggcatt gaggatacct caaatcctat cggcactgat gcggtaaaaa taatgcaagc
    15001 gattgaatcg gtatttagcc cagacggtgt gattgtgttt gtcgatttag gcagtgcaat
    15061 tttaagtacc caaaccgcca tagatttact ggagccggaa cttgccgaaa aagtgatcat
    15121 tagctacgct cctttagttg aaggtgcttt tgctgctgta gttgcagcct ctgccggcga
    15181 tagtttagaa gcggtattaa atgaagcgaa cgaagccgct gctcttaagc aggaacaagc
    15241 caattagtaa aaatgccgta tcgaaaaata cggcatttta gttttattag tacaatagtg
    15301 aataaagctg tcttctaaat ttcggcacaa tcgggtctgt acccagtgca gataagattg
    15361 ccagaaattg gctttttacc tcgccgttcg ctacatttaa atccgatttt aaccaatcaa
    15421 aaagtaacgt gagtgcttct tcatttttat gagcttggtg tagctgattt gccaatttaa
    15481 tcgcaatttc aggggttttg ctgttcgcat aatccgcttg aagctgttgt aattcgggcg
    15541 attcgctggc ttgttccaat aattcgattt gggcttgcaa accgtgccaa cggctgtctc
    15601 tgtcttgaat cgggatcgct ttaaggattt cacgagcctc ttccacgctt ttcattgcaa
    15661 tgtaagtttc ggcatagagc aaagcgaaat cgctgttttt cttatcggtc atttcccacg
    15721 ctgatttcag cagcggcaag gcttcggtat aacgctgatc ttgcaataat tccaaggctt
    15781 gttgaaattt cagctcttcc tctttcggta aaatatttgc caaccgaatc cgtaattcct
    15841 gctcacttac tgcaccttga attgcatcaa tcggctgacc gccggcaaac aaatagagcg
    15901 ttggaatttg ttgaatgcga aattgagcag ccaatgcttg ttgctcatca caatttaccg
    15961 tcgccaataa aaattggtta gggttttcat ccgaaatacg acgtagtaag gcatccattt
    16021 ccaatgaagc cacttccctt ggcgaaataa aatgaaacac cgtcggcact tgtgccgctg
    16081 ctgcccatac ttcactaaaa ttctgctcgt ttacatttac aaagtagtcc atacaaaacc
    16141 ttcttaagct aaaaattact ttttatattg tagcattaat aagaagtttc aataggtagc
    16201 ccgtttctct cccacgcttc aaaaccacct tttacactat aaacattctc aaacccttgt
    16261 tcgattaaaa actgtgctgt actttggcta ctcactccgt gatagcaaat cacaaccacc
    16321 ggttcgtcat aatcgacctc gtctaaaaac ttaccataac tctggttggt taaatgaaac
    16381 gcatcctgtg ggtggctgta aacataacgg cgggcatcac gcacatcggc aagcaccgca
    16441 ccttcgtttt cgattaattc ccaagcctgt tgcgggctaa tttctttaaa tgtagtttcc
    16501 ataatcactt tccctcaaaa aacgtgcaac tataccataa aattctaaaa agaatggcta
    16561 ttattccaag ttgaaaattt gatgtttgtc agatataatt gcaaactatt ttcaaatgca
    16621 ctgatttaaa actaccacag tttgaggatt ttatggagca attatttcaa tttttagaac
    16681 atcatactga ctttgttata ttaggattac taggcttatt aagcgtaatc tgcctttgga
    16741 aagctattga acgtattatg ttttattcca aagtagatat ttcaaaatac gataccctcg
    16801 aagaattaga catcgattta acccacaatt taactaccat ttcgactatc ggctctaatg
    16861 ccccttatat cggcttatta ggaaccgttg tcggtattct tttaactttc tatcatttag
    16921 gtcaatcagg tggtgatatt gatgcggcct ctattatggt aaacctttct ttagctctaa
    16981 aagccactgc tgtcggtatc ttagtggcaa ttattgcaat ggttttctac aatggttttg
    17041 gtcgtaaagt ggaagaaaac aaactgaaat ggttggcatt acaatcaaaa aagcctcatc
    17101 aagcggtgtg atttagtcca ttttttgcaa attaataagg cagaacaatg aaaaaattcg
    17161 atgaaatcaa catcattcca tttattgata ttatgttggt attactggct atcgtgttag
    17221 ttaccgcctc tttcatttct cagggtaaaa tccaagtaaa tgtaccgaaa gcaagtacaa
    17281 cacagccaat gaaagcagac gatttagcga agcttttaac cattaccgaa aataatgagt
    17341 ttttctttaa tgatcaagca ataactaaag agcaattaat tgctgaagtt gccacttggg
    17401 ataaaagcca aaaagtgtca ctcaaagttg atggtgcagt cgccttcgaa aaatttgtgg
    17461 aattaaccga tatcctttct gcaaatgaaa ttaaaaatgt agcaatcatt actaaaaaag
    17521 aaactgctcc agcaccttca agcacacctg gtagccctgc acaagtgcca gcagtcgcac
    17581 cttaaatagg gtaaacaggt atgaaaaaaa aacattctcg tatcggctta ttggcatctt
    17641 tggctattca cactgcctta attggtggca cttttgcttg gttacataac cacaaagtgg
    17701 aaaaaattgc cgagcaaaac tctctttcta tggaaatggt ggcagcatta ttagagcaac
    17761 ctcaggttgc cgttgctccg gatcctatta ccgaagaggt caaagaaatc gaaccggaga
    17821 aggcagaagt accacctgaa cctaagctta ctccggagcc aactccagag ccggaggcaa
    17881 ttccagatcc tacgctaaat ccgaaaaagg aaaaaccgaa agaagaaaag cgtaaagagc
    17941 gacaccacca taaacataag catcgtcaca aagagaaaag ggaagagcta caagagcaag
    18001 aaaaaccgaa agataagcct aaagagcgcc cgaaacatca tcacaagcat attaaagcat
    18061 tagagcgcgg gccagagata aaacaaggta ttgtcgctaa agcgattcca aatgcggctg
    18121 aaggtgaaaa agtggttgcg ggggttgttg gagggcaaaa aaacggttca ccaaattcaa
    18181 cctcaactac aggttcagca aatactgggg ctagcagtgg taatgccagt gaacttgctg
    18241 cttataaagt cgcattacag cgagcattac agcgtaaggc gaataactct taccctcagc
    18301 gtgaaaaaat gatgcggaaa accggtacag ttacgattaa atttaccatt acatcgtccg
    18361 gttcaattac aaatgtatcc gtactcaatt catcgggaaa tagtaattta gataacgctg
    18421 cggtacgcag tgcagaaggt ttgagtatgc ctccgccacc ggcaggcttc cctcctacgg
    18481 taacagtacc ggtaagattt gcccttgaat aaaaacagcc ctcaaaagca atgtactttt
    18541 gagggctttt tattgcaaaa aattgactaa aaatgaccgc ttactgcttg cgaatatcgc
    18601 catttctcac attcggactc acttcacccg tacgagtttc tgtgcttaac gaggtagaat
    18661 ttactttcgt aaaagtataa tccgctttgc tgaattcacc tgtttgatta tttaagaaga
    18721 aattgcggta ctcttttacc cataatgccg ttgcgccaca aactgccaca ggcataacta
    18781 ctaaattcac aaatggaatc atcgtgaata ggctcactaa agcaccaaag gtaaaattta
    18841 aagtgcgaga ctgcgacaac gcatttcgca tacgctgaaa actgatttta tggttatcaa
    18901 acggatagtc acaatattga atggcgatca accaagcacc gaagataaaa gtcagcacag
    18961 gtgctacggt ttgcccaacc acaggcaaaa agcctaatac aaaaagagca atcagccttg
    19021 gaatgctata catcattttt tgccattctc gtttcagcat tcgaggcaca tcttttaaca
    19081 ttgcaccgaa tgacatatcg cccaaaggct cgccggtaag ttgcagttcg actttttctg
    19141 ctaataacgc attaaaggga gcagcaacaa agttagccaa ggtagtaaaa gcaaaataaa
    19201 atcccactaa tatcatcaaa aaaatcagtg gaatcagtac aaagctaagc cattccagcc
    19261 agcttggcag taacatatcc aacaagccac cgatattggc aaaaaatccc caaatcagcc
    19321 ctaccatcag cacggtatta ataagaattg ggaaaatcac aaaaggcaaa aattgacgtt
    19381 gtaacaataa ccgccagcca tatataaaat aatgaaagcc taatccgact tgattttgcg
    19441 gctcagaaaa aactgaagac ataatgattc cttattt
//
LOCUS       DANMBQ010000032        19351 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.032, whole genome shotgun sequence.
ACCESSION   DANMBQ010000032 DANMBQ010000000
VERSION     DANMBQ010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19351
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.032"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            30..980
                     /gene="tal"
                     /locus_tag="PXE92_001010"
     CDS             30..980
                     /gene="tal"
                     /locus_tag="PXE92_001010"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDL5760275.1"
                     /translation="MSQLDTLSKMTVIVADTGDIEAIKLYKPKDATTNPSLILSASAL
                     PQYAPLIEEAINYAKAQSSDKDQQLVDAEDKLAVNIGLEILKLVPGRISTEVDARFSY
                     DTEKTIAKARKLIGLYNDAGISNDRILIKIASTWQGIKAAEQLEKEGINCNLTLLFSQ
                     AQARACAEAGVYLISPFVGRILDWYKAHEGKEYAPAEDPGVISVTNIYNYYKQHGYDT
                     IVMGASFRNVGEIIELAGCDRLTISPPLLKELQESDEKLVCKLDYKGEIKPRPEKMTE
                     AEFYWEHNQEPMAVEKLAEGIRKFAIDQEKLEAMLAEKLQ"
     gene            complement(1042..1315)
                     /locus_tag="PXE92_001011"
                     /pseudo
     CDS             complement(1042..1315)
                     /locus_tag="PXE92_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599987.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
     gene            complement(1346..1810)
                     /locus_tag="PXE92_001012"
     CDS             complement(1346..1810)
                     /locus_tag="PXE92_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL5760276.1"
                     /translation="MKKLALAVALMSSFALVGCANTDVFSGSVYSGEQAKEARSIAYG
                     TIVSVRDVKIQARSEGVIGTVGGGVLGGVAGNAIGGGTGQAIATAVGAVAGAVIGNQV
                     EQKASQVSSLEMVIRKDDGKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSLL"
     gene            complement(1831..2430)
                     /locus_tag="PXE92_001013"
     CDS             complement(1831..2430)
                     /locus_tag="PXE92_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5760277.1"
                     /translation="MDKIIAENAKFFEKMTACFGDLSQFEQKIRQIAEIAGIDLAAYE
                     IDHLAVRMNQTETAEQWKILLLDGATLLKESEVNGRPIGLFALIQAVEFCGQFVKIVE
                     LPFPKNKVYLEEGWEHIELVFPMLDNESSEQWVSRALSHFRLADNSEIKLKISQPQVE
                     GERLPNPSIAISLRNVTFCNPYCLKLHPYDIKSVIMSEN"
     gene            2464..4191
                     /gene="argS"
                     /locus_tag="PXE92_001014"
     CDS             2464..4191
                     /gene="argS"
                     /locus_tag="PXE92_001014"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDL5760278.1"
                     /translation="MNIQQILSDKIKQAMVASGADSNVEPLVRQSGKPEFGDYQANGA
                     MGAAKKLGMNPREFAQKILENADLNGIADKLEIAGPGFINIFLNPEWLAENTNSSLQA
                     VNFGIKTANPQTIVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLAFLGNNVIRANHVG
                     DWGTQFGMLIAYLEKMENEHASEMELSDLEAFYRAAKEHYDSDEAFAEKARNYVVKLQ
                     SGDKYCLTMWKKLVDITMHHNQENYNRLNVTLTEKDVMGESLYNPMLPEIVADLKAKG
                     LAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRAL
                     VFSDSRQAQHMQQAWLITRKAGYVPDSFSLEHPFFGMMLGKDGKPFKTRSGGTVKLKD
                     LLDEAVERADKLIAERSTELTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNML
                     TFEGNTAPYMQYAYTRIRSIFARANIDENALSGSIQLNEPKERALAVKLLQFEEALNG
                     VAKEGMPHILCQYLYELAGSFSSFYEACPILNAEETTKNSRLKLAALTAKTLKQGLDL
                     LGIKTVEKM"
     gene            4381..5547
                     /gene="cgtA"
                     /locus_tag="PXE92_001015"
     CDS             4381..5547
                     /gene="cgtA"
                     /locus_tag="PXE92_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HDL5760279.1"
                     /translation="MKFIDEALIRVEAGDGGNGCVSFRREKFIPKGGPDGGDGGDGGD
                     VYLIADENLNTLIDYRFEKRYAAGRGENGRSAGCTGHRGQDITLRVPVGTRAIDNDTQ
                     EIIGDLTRHGMKMLVAKGGYHGLGNTRFKSSVNRAPRQKTNGTPGEKRDLKLELLLLA
                     DVGMLGLPNAGKSTFIRSVSAAKPKVADYPFTTLVPSLGVARVGADRSFVVADIPGLI
                     EGAADGAGLGIRFLKHLERCRILIHLVDIMPIDESDPAHNISVIESELYQYSEKLAEK
                     PIWLVFNKIDTIGEEEAAERAKDIAEQIGWEGDYYLISAATGQNVQALTRDIMDFIEA
                     NPREVEEENKAPEEVKFKWEDYHNEAMQNAVEEDWDDDWSEEDDEGIEFIYERH"
     gene            5632..6249
                     /locus_tag="PXE92_001016"
     CDS             5632..6249
                     /locus_tag="PXE92_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate 1-dehydrogenase family
                     protein"
                     /protein_id="HDL5760280.1"
                     /translation="MLSSTSCDLFNIPFFQFAQMKKYCPEEIPRIKAEYKTQWEIWKK
                     LHQEVSRQLGQPFAPPHIEKWCNGWQVRAHFFAYYKYEFNRNSAAILSVILNRRRLQV
                     SLDWHCYRADRSQINVHQYNQWWENLDREKFADFEIWHGSESEYDDFRTVSQMSEQAF
                     TLTNEEDFWCIGKNVEKDDLDNIDVVEFIYQTIRALLPLYEKCHQ"
     gene            complement(6296..8254)
                     /locus_tag="PXE92_001017"
     CDS             complement(6296..8254)
                     /locus_tag="PXE92_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HDL5760281.1"
                     /translation="MIAELGNYTLALALAISILLAVLPLWGAEKQNSTLIALARPMTW
                     AMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRLSAVWGAHEGSLLLWVWL
                     LSLWSVGVATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSNPFDRTFPNFPIDGKE
                     LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVF
                     LTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAVTEKRGTFKAWT
                     VLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYILAYLVLVVGGSLLLYAFKG
                     SEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTISIGAPFFD
                     QMFLILMVPFSFVLGIGPLVKWRRDQVSAIRKPVIIATILMALLGFGLPYLFRNTITV
                     SVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVAMTVFGI
                     AFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGKYEAT
                     LNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWIGG
                     LFMALGGLLCMLDKRYRLRIENKKEVIA"
     gene            complement(8251..8808)
                     /gene="ccmE"
                     /locus_tag="PXE92_001018"
     CDS             complement(8251..8808)
                     /gene="ccmE"
                     /locus_tag="PXE92_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HDL5760282.1"
                     /translation="MNPRRKSRLKVVVSILLGLSVAAGLTLYALSQNIDLFYTPSEIV
                     NGKNDDPKQKPEVGQRIRVGGMVVEDTVKRDDKSLKVVFDLNDIGPSITVEYEGILPD
                     LFREGQGIVAQGVLIEPTRLKATEVLAKHDENYMPPELGDKLKEQHKKSGVSEQDLKG
                     ESETDRKMKAEAEAEKANNVQGESK"
     gene            complement(8994..9191)
                     /gene="ccmD"
                     /locus_tag="PXE92_001019"
     CDS             complement(8994..9191)
                     /gene="ccmD"
                     /locus_tag="PXE92_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HDL5760283.1"
                     /translation="MTFQFESISDFFAMGGYGFYVWLSYGVSFIAMIGLIWLSRREQK
                     AILAQAKKEIVREEKLKQTSQ"
     gene            complement(9206..9943)
                     /locus_tag="PXE92_001020"
     CDS             complement(9206..9943)
                     /locus_tag="PXE92_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease"
                     /protein_id="HDL5760284.1"
                     /translation="MWKWLHPYAKSETQYHLLGKIQPFLGWLSLIMLAAAFVWGLAFA
                     PKDYQQGDSYRIIFIHVPAAIWSMGVYGSMAVAGLVALVWQIRQANLAMISMAPIGLV
                     FAFISLATGAIWGKPMWGTWWVWDARLTSALVLFFLYIGVMALYSAFQDRQTGAKAAA
                     VLSVVGVINLPIIHFSVEWWNTLHQGATITKFDKPSMAVEMLIPLLLAIFGSLIFTAW
                     FSIWRYRIALLKDERNRPWVKQLAKSV"
     gene            complement(10143..10805)
                     /gene="ccmB"
                     /locus_tag="PXE92_001021"
     CDS             complement(10143..10805)
                     /gene="ccmB"
                     /locus_tag="PXE92_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005565617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HDL5760285.1"
                     /translation="MILLTIIQRELTIAFRKPSEILNPLWFFLMVITVFPILMGPNPE
                     LLGKIAGGIAWVAALLSALLSFERLFRDDYLDGSLEQLMLLPLALPQVALAKVIAHWL
                     LTGLPLILLSPIAAILLSLETHVWWALVLTLLLGTPILSCLGAIGVALTVGLRKGGTL
                     LSLLILPLFLPVLIFAAAVLEAATLNMGYSGQLAIIGAILAVTLTFSPFAIAGALRIS
                     LN"
     gene            complement(10802..11443)
                     /gene="ccmA"
                     /locus_tag="PXE92_001022"
     CDS             complement(10802..11443)
                     /gene="ccmA"
                     /locus_tag="PXE92_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HDL5760286.1"
                     /translation="MNQTAQYQLKLNQIACERGETRLFEGCSFTVQSGEWVQIEGHNG
                     IGKTSLLRILAGLFLPAEGEVLWNDIAIQKQRDHYYSELFYLGHYSGVKPELTPWENL
                     RFYQKIQQLPQDDDALWHALTKVSLIGREDLPCSHLSAGQQRRVALAKLWLTNAKLWI
                     LDEPFTAIDKKGVADLIAHIEQHCEQGRLVIFTSHQAAESDKVRIISLDQFKV"
     gene            complement(11587..12297)
                     /gene="hda"
                     /locus_tag="PXE92_001023"
     CDS             complement(11587..12297)
                     /gene="hda"
                     /locus_tag="PXE92_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HDL5760287.1"
                     /translation="MQLPLPIHQIDEDTFDNFYSQNSEVLLGSLKRNFTDVQQPFFYI
                     WGGKSCGKSHLLKAVSNHFLLNNQTSSYIPLTKANYFSPLVLDNAELLNVICLDDIQA
                     IAGDAEWELAIFNLFNQIREQQGLFNEGQKTLLLISADCPPHQLNIQLPDLRSRLTWG
                     EVYQLNDLTDEQKCQILQLNAHQKGVELSDEVAHFLLKKAGTDLEQLSKILDKLDKAS
                     LQAQRKLTIPFVKEILSL"
     gene            12567..14168
                     /locus_tag="PXE92_001024"
     CDS             12567..14168
                     /locus_tag="PXE92_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5760288.1"
                     /translation="MKNMTKLSLITLALAASSSVFAAPKTFVYCLEASPSALSPVLST
                     DGASFDVNALPIYNKLTDFEDGTTNVIPSLAEKWDISEDGKTYTFHLRKGVKFHDNKE
                     FKPSRELNADDVVFSINRQFDPNHPFHKVSGGNYEYFIGMDMQNIIDKVEKVDDHTVK
                     ISLKVPNAPFLANLAMDFNAVYSAEYAEQSLKAGKPERIDTNPIGSGPFQFVDYQKDA
                     TVRYKAFENYWQGTAKIDRLVFAITPDASVRLAKLQKGECHAMPYPNPADIEDLKKDP
                     NIELMSQSGMNIGYLALNSSIKPLDNQKVRQALNHAVNKQAIVDAVYQGAGQVAKNPI
                     PPTMWSYNEAVQDYDYNPEKAKALLKEAGFENGFDTELWAMPVSRPYNPNARRMAELI
                     QEDWKKVGVNAKIVSYEWGEYLKRLRQGEAATSMIGWTGDNGDPDNFLNTLLSCSAVE
                     AGSNYAKFCHKPFEEVVLGAAQESDKAKRTELYKQAQVIFKEQAPWITIAHSTVYFPV
                     RKEVKGYVMSPFSLHNFYKVDLADK"
     gene            14440..15444
                     /locus_tag="PXE92_001025"
     CDS             14440..15444
                     /locus_tag="PXE92_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5760289.1"
                     /translation="MFSFILKRVLMVIPTFIAITLITFALVHFIPGDPIEIRMGERGL
                     SPEVHQQMMEQLGLNRPLFEQYISYIKGVLHGDLGNSFRNNEPVLKEFFTLFPATVEL
                     AFFALLWSLIFGIILGVIAAVKKESWISHTVTTLSLTGYSMPIFWWGLILILYFSTPL
                     GLPASGRLPSEYWIEAETGFMLIDTWNSDEPGAFLAAIKSLILPSIVLGTIPLAVVTR
                     MTRSSMLEVLGEDYIRTAKAKGLNTTRIVIVHALRNALIPVVTVVGLIVGQLLSGAVL
                     TENIFSWPGIGKWIIDAINSRDYPVLQGSVLIIATIIILVNLTVDLLYGIVNPRIRHS
                     "
     gene            15546..16439
                     /locus_tag="PXE92_001026"
     CDS             15546..16439
                     /locus_tag="PXE92_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5760290.1"
                     /translation="MSGITAVNPPAPKTPLQEFWYYFCQNRGALIGLTFIAIVFVACV
                     FAPWVAPFDPIEQNRSALLLPPAWLEGGNSAHLLGTDDIGRDILSRIIYGSRLSVFIG
                     LVIVLLSCVFGVILGLLAGYYGGTLDIIIMRFVDIMLAIPSLLLTIGVVTILGPSLIN
                     AAIAIAIVSIPSYVRLTRASVLSEKNRDYVTASRVAGASVLRLMFVVILPNCLAPLIV
                     QMTMGISNAILELAALGFLGIGAQPPTPELGTMLAESRGFMQSANWLVTIPGLAILSL
                     VLAFNLMGDGLRDALDPKLKQ"
     gene            16450..17439
                     /gene="dppD"
                     /locus_tag="PXE92_001027"
     CDS             16450..17439
                     /gene="dppD"
                     /locus_tag="PXE92_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HDL5760291.1"
                     /translation="MALLTVDQLSVHFGETKTPFKAVDRISYEVNEGEVLGIVGESGS
                     GKSVSSLAIMGLIDFPGRVMAEKLYFNGNDLLALKPKEKQQIVGADVSMIFQDAMTSL
                     NPSYTVGYQIMEALKVHQGGSKASRRERAIELLTMVGIPDPESRLEVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVA
                     ESAHRIIVMYAGQVVEEGKAEQIFKAPLHPYTQALLKALPEFAEGKSRLQSLPGVVPG
                     KYDRPQGCLLNPRCPYATEKCRTIEPAMQIINGRQVKCHTPLNAQGEPIRIAV"
     gene            17567..18556
                     /locus_tag="PXE92_001028"
     CDS             17567..18556
                     /locus_tag="PXE92_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5760292.1"
                     /translation="MKENNSLPPFLKAVDLKKYYPVKKGMFAKPKTVKALDGVSFTLE
                     RGKTLAIVGESGCGKSTLGRMLTMIESPTEGELFYNGQNFLVNDKETAQLRRKKIQIV
                     FQNPYSSLNPRKKVGSILEEPLLINTNLSAKERKEKVLEMMAKVGLKPEFYDRYPHMF
                     SGGQRQRIAIARGLMLQPDIVVADEPVSALDVSVRAQVLNLMMDLQEEMGLSYVFISH
                     DLSVVEHIADEVMVMYLGRCVEQGDTKTIFSNPRHPYTQALLSATPRLNPEQRRERIK
                     LTGELPSPLNPPKGCAFNARCRFATDRCYVERPELKTYQDGTRIACFVVEENN"
     gene            complement(18790..19347)
                     /locus_tag="PXE92_001029"
     CDS             complement(18790..19347)
                     /locus_tag="PXE92_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDL5760293.1"
                     /translation="MSLDISSEQLADIRQQMLKFAQLQLQDIALAEDMVQEAFVNAIK
                     NIDNFQRKAALKTWIFAILKNKIIDYLRKKDRIVLESDLADDDEENHFFDNYGHWKEE
                     YYPSSWQEEAVYSKEFWILFEVCLSNLPAKQARVFMMREYLEATSDEICRVVNITSDN
                     LYTLIYRARLQLQQCLSRKLTERNR"
BASE COUNT         5841 a         4236 c         4007 g         5267 t
ORIGIN      
        1 tatttcacaa tcaaaaaagg aatcagacta tgagccaact tgacacctta agcaaaatga
       61 ccgttatcgt tgctgacact ggtgatattg aagcaatcaa actttataag ccaaaagatg
      121 caacaacaaa cccgtcttta attttaagtg catcggcatt accgcaatat gctccattaa
      181 ttgaagaagc gattaattac gcaaaagcac aaagtagcga taaagatcaa cagttagttg
      241 atgctgaaga taaattagcg gtaaatattg gtttagaaat cttaaaactt gtacctggac
      301 gtatttctac agaagttgat gctcgttttt cttatgatac tgaaaaaact atcgctaaag
      361 cacgtaaatt aattggatta tataacgatg caggcatcag taatgatcgc attttaatta
      421 aaattgcctc tacttggcaa ggtataaagg cagcagaaca gttagaaaaa gaaggcatta
      481 actgtaactt aacgttatta ttctctcaag ctcaagctcg tgcgtgtgca gaagcagggg
      541 tttacttaat ctctccattc gttggtcgta ttttagactg gtacaaagct cacgaaggta
      601 aagaatatgc tccagctgaa gatccaggtg taatttcagt aaccaatata tacaattact
      661 acaaacaaca cggttatgac actattgtaa tgggtgcaag tttccgtaat gtaggagaga
      721 tcattgagtt agctggttgc gaccgtttaa ccatctcacc accgttatta aaagagctac
      781 aagagagcga tgaaaaatta gtttgcaagc tagattacaa aggtgaaatc aagcctcgtc
      841 cagaaaaaat gacagaagca gaattctact gggagcataa ccaagagcca atggcagtag
      901 aaaaattagc tgaaggcatt cgtaaatttg cgattgacca agagaagtta gaagcaatgc
      961 ttgctgaaaa acttcaatag acaacgcata aaaaaaccgg cattaacgat aattaatgcc
     1021 ggttttaatt tctataaatg attatttaaa ctcataacgt ctaatcgttt ttagatcgct
     1081 atcttcattt ttaatttcat cggcaagatg aacacgagca ccaaccgctg catgtgcatc
     1141 atactcacga gttagagtca cagtttcacc attatctcgt tgaactgtaa gttcaacaac
     1201 atcgtttgat actgctttgc tagataaatg ttgcattacc tttatcagaa taaacatctg
     1261 cagtacaagc tgctaacata agtgaagcta atacagctaa agaaagtttt ttcattaata
     1321 atatatcctc taggaaaaac taaaattaaa gcagagaaac attcaggtct gaattagacc
     1381 ctacgattct cacacgtttg ccaggcacaa aaccgtcttc tttcttttga acgaccacga
     1441 tttctttacc atcatctttg cgaataacca tttccaatga agaaacttga ctcgcttttt
     1501 gttctacttg attaccaatt accgcaccgg caactgcccc cactgcggtt gcaatcgctt
     1561 gccctgtacc accgccaatc gcattaccgg caacgccacc taatacacca ccgccgacag
     1621 taccgatcac accttcactg cgtgcttgaa ttttcacatc acgcactgaa acaatagtgc
     1681 cataagcgat agaacgagct tcttttgcct gctcaccgga ataaacgctt ccgctaaaca
     1741 cgtctgtatt tgcacagcca actaaagcaa aacttgacat taatgcgaca gctaaagcta
     1801 attttttcat tttgtttgtt ctccgaaacg ttaattttct gacataatta cactttttat
     1861 atcataaggg tggagcttta gacaataagg attacaaaaa gttacatttc tcaagctgat
     1921 cgcaatgctt ggatttggca atctctcccc ttctacctga ggttggctga tttttaattt
     1981 aatctcagaa ttatcagcaa gtctaaagtg cgacaatgcc cttgacaccc attgttccga
     2041 actttcgttg tctaacatcg gaaaaaccag ctcaatatgt tcccagcctt cttctaaata
     2101 aaccttattt ttcggaaaag gcaactcgac aatctttaca aattgtccgc aaaattcaac
     2161 cgcttgtatt aatgcaaaca gccctatcgg tctgccgttt acctcgctct ctttaagtaa
     2221 ggttgcccca tcaagcaaaa ggatcttcca ctgttctgcg gtttcggttt ggttcattct
     2281 taccgcaaga tgatcgattt catacgctgc taaatcaatg ccggcgattt cagcaatttg
     2341 tcggattttc tgttcaaatt gcgataaatc gccaaaacaa gcggtcattt tctcgaaaaa
     2401 ttttgcattt tctgctataa ttttgtccat ttttttgtaa atagaattta aataggttaa
     2461 acagtgaata ttcaacaaat tttatcagat aaaattaaac aggcaatggt agcaagcggt
     2521 gcagacagca atgtcgagcc tttagtccgc caatcgggca agccggaatt tggcgattac
     2581 caagccaatg gtgcgatggg tgcagcgaaa aaattgggga tgaatccgcg tgaatttgcc
     2641 caaaaaatct tagagaatgc cgatttgaac ggtattgccg ataaattaga aattgccggt
     2701 ccgggcttta tcaacatttt cttaaaccca gaatggctgg cggagaacac taacagttca
     2761 ttgcaagcgg tcaattttgg cataaaaact gcaaatccgc agacgattgt gatcgactac
     2821 tcctcgccaa acgtagcaaa agaaatgcac gtcgggcatt tgcgttccac cattattggc
     2881 gatgcggtag ttcgtaccct tgcgttttta ggcaataatg tgattcgtgc caaccacgtt
     2941 ggcgactggg gtactcaatt cggtatgctg atcgcttacc ttgaaaaaat ggaaaatgag
     3001 cacgccagcg aaatggagct aagcgattta gaagccttct atcgtgcggc aaaagagcat
     3061 tatgattcag acgaagcatt cgccgaaaaa gcccgtaact atgtggtgaa attacaaagc
     3121 ggcgataaat attgcttaac aatgtggaaa aaattggtcg atattacaat gcaccacaat
     3181 caagagaact acaatcgctt aaatgttacg ctcaccgaaa aagatgtaat gggcgaaagc
     3241 ctctacaatc caatgttgcc tgaaattgtg gcggatttaa aagccaaagg cttagcggtg
     3301 gaagatgacg gtgctttagt ggttttcctc gatgaattta aaaataaaga tggcgaccca
     3361 atgggcgtaa tcgtgcagaa aaaagatggc ggtttcttat ataccactac cgatattgcg
     3421 gcagcaaaat atcgctacga gaccttaaaa gctgaccgag ccttagtctt ttctgacagc
     3481 cgccaagctc aacatatgca acaggcatgg ctcattaccc gcaaagcggg ctatgtgccg
     3541 gacagtttca gccttgaaca cccgttcttc ggaatgatgc taggcaaaga cggcaaaccg
     3601 ttcaaaaccc gtagcggtgg cacagtcaaa ctcaaagatt tattagatga agcggtagag
     3661 cgtgccgata aactgattgc cgaacgttca accgagctaa ctgcggaaga aaaagccgcc
     3721 gtggttgaag cggttgcgat tggttcggtg aaatattctg acttatcgaa aaaccgcacc
     3781 accgattatg tgttcgattg ggacaatatg ctgacctttg aaggcaatac cgccccgtat
     3841 atgcagtatg cctacacccg cattcgctcc atctttgccc gtgcgaacat tgacgaaaat
     3901 gcattgagcg gttcaatcca actcaatgag ccaaaagagc gtgcattagc agtgaaacta
     3961 ttgcaatttg aagaggcatt aaacggcgtg gcaaaagaag gtatgccaca tattttatgc
     4021 caatatttat acgagcttgc aggtagtttc tccagtttct acgaggcttg cccgattctc
     4081 aatgccgaag aaacaaccaa aaacagccgt ttgaaactcg ctgccttaac ggcgaaaacc
     4141 ttgaaacaag ggttggattt actcggtatt aaaactgtag agaagatgta atacaaactc
     4201 tctccccttg tgggagagag accgcttatg agcgttcagc gaaataagca gagagagggg
     4261 acaagcggta atttttatta aaatttttac acattttccc ctctccctga tttttcttct
     4321 gaacgaagaa aaatctgtcc ctctcccaca aggggagagg gcatataaaa ggaaacaaat
     4381 atgaaattta ttgacgaagc cctgattcgt gtagaagcag gcgatggcgg taatggctgt
     4441 gtgagcttcc gccgtgaaaa atttatcccg aaaggcggac ctgacggtgg tgatggtggc
     4501 gatggtggtg atgtgtattt aattgccgat gaaaacctaa acacccttat cgactaccgc
     4561 tttgaaaaac gttatgccgc tgggcgtggc gagaatggtc gcagtgccgg ctgtaccgga
     4621 catcgtgggc aagatattac cctacgagtg ccggttggaa cccgtgcgat tgataacgac
     4681 acccaagaaa ttattggcga tttaacccgc cacggaatga aaatgctggt ggcaaaaggt
     4741 ggttatcacg gtttaggtaa tacccgcttt aaatcctcag taaaccgagc tccacgccaa
     4801 aaaaccaacg gtacgcctgg cgaaaaacgt gatttgaaat tagagctgtt actgcttgcc
     4861 gatgtgggaa tgcttggctt accaaacgcc ggtaaatcca cctttatccg cagtgtctct
     4921 gctgccaaac caaaagtggc ggattacccg ttcacgacgc tggtgccaag tttaggggta
     4981 gcccgtgtgg gggccgaccg cagttttgtg gttgccgata ttccggggtt aattgaaggt
     5041 gcagcagatg gtgcagggct ggggattcgt ttcctaaaac acttggaacg ttgccgtatt
     5101 ttgattcact tagtcgatat tatgccgatt gatgaaagcg atccggctca taatatttcg
     5161 gtgattgaat ccgagcttta ccaatacagc gaaaaactcg ccgaaaaacc gatctggttg
     5221 gtgtttaata aaattgacac catcggcgaa gaagaagctg ctgagcgagc aaaagacatt
     5281 gccgagcaaa tcggctggga aggcgattac tacttgattt ctgccgctac cggtcaaaac
     5341 gtgcaagctc tcactcgtga tattatggac tttattgaag ccaacccacg cgaagtggag
     5401 gaagaaaata aagcacctga agaagtcaaa ttcaaatggg aagactacca caacgaagca
     5461 atgcaaaatg cggtagaaga agattgggac gacgattgga gcgaagaaga tgacgaaggc
     5521 atagagttta tttacgaacg ccattagtgc aataatacaa gcggttgttt ttaaacggag
     5581 atttgcaaat ttccggagaa aaacaaccgc ttgtaggttt aaggagagtt tatgcttagc
     5641 tcaacatcgt gcgatttatt caatattccg ttcttccaat ttgctcagat gaagaaatat
     5701 tgccctgagg agatccctcg aattaaggcg gaatataaaa ctcaatggga aatttggaaa
     5761 aagctacatc aggaagtttc tcgtcagctt gggcagccgt ttgctccacc acatattgag
     5821 aagtggtgca acggttggca agttcgagcc catttttttg cctattacaa gtatgaattt
     5881 aatcgaaatt ctgcggctat tctttccgtg attttaaatc gtcgccgttt gcaagtgagc
     5941 cttgattggc attgttatcg agccgatcgc tcgcaaatta acgtgcatca atacaatcaa
     6001 tggtgggaaa atttagatcg ggaaaagttt gctgattttg agatttggca cggaagtgag
     6061 agtgaatatg atgattttag aaccgttagt cagatgtcag agcaagcgtt caccctaact
     6121 aacgaggaag atttttggtg tatcggcaaa aatgtggaaa aggacgattt ggataacatt
     6181 gatgtagtag aatttatcta ccaaaccatt cgggcattat tgccacttta tgagaaatgt
     6241 catcaataaa cactaaaaag agaggcgaac atcatttgtt cgcccctttc aaaatttaag
     6301 ctatcacttc ttttttattt tcaatgcgta aacggtagcg tttatccaac atacagagta
     6361 aaccaccgag agccataaac agcccgccaa tccaaatcca gcgaatgaac ggtttataat
     6421 acaaacgcac tgcccaagag ttatcttcta atttttcgcc aagtgcagcg tataaatctc
     6481 gggtaaagcc ccagtcaatc gccgcttcgg tcattcccat tcggctcacc gtatagaaac
     6541 gtttttcagc attaagtgtg gcttcatatt taccgtttcg agtaatttca agctcggcag
     6601 tgccgccttg atagtttgcc ccatcggtga ttttaatacc tttaaattca aattggtaat
     6661 ctaaaatctc agctttatca cccacattca ttctgacatc tcgttcaatg ctgaaatttt
     6721 ggctaaatgc aatgccgaac actgtcatcg caacccctaa gtgagccagc accattcccc
     6781 aatgtgaacg ggacagtttg aaaatgccac ttaagaacga gtggcgatgg gttgcacgtt
     6841 ggtgtagctc atacaggcta agtaacacaa taaagacaga catcatcgtg cctaacacca
     6901 cactcacggt aatggtgtta cggaataagt atggcaatcc gaatccaagc aatgccatta
     6961 aaatagttgc aataattacc ggtttacgaa tagcagaaac ttggtctcta cgccatttca
     7021 ctaatggtcc aatccctaat acaaatgaga aaggaaccat taaaattaag aacatttggt
     7081 caaaaaatgg tgccccgatt gaaatcgtcc ctaagccgat ttgtttgtga attaatggca
     7141 gtaaggtccc taaaaacacc accgataaaa atgccattaa taaaatatta ttaatgagta
     7201 gcatcgtttc tcttgaatag cgttcatagt tatctaagct tttaatttcc gagcctttga
     7261 atgcatacag cagtaaagaa ccacctacta ctaacaccaa gtaagccaag atgtataaac
     7321 cacgagttgg atctgaagca aaggcgtgaa ctgacaccaa aatgcctgaa cgcactaaga
     7381 aagtccccac taaacagagc gagaaagcaa gaatcgctaa taagaccgtc cacgctttaa
     7441 atgtgcctcg tttttcagtc actgctaatg aatgaatcag tgctgttcct gcgagccacg
     7501 gcattaatga ggcattctcg acaggatccc agaaccacca gccaccccaa ccaagttcgt
     7561 agtatgccca ccaagaacca agcacgatac cgagcgttaa aaatacccac gctgccattg
     7621 tccacggacg agaccatctt gcccacgcag tatctaaacg ccctgtcatc agtgaggcaa
     7681 tcgcaaaagc aaaggcaacg gagaaaccca catagcccat ataaagcaac ggtgggtgga
     7741 agatcaagcc cacatcttgc agcattgggt ttaattcttt gccatcaatc ggaaaatttg
     7801 ggaaagttct atcaaacggg ttggaggtaa aaatcacaaa catcaaaaag ccgatgccaa
     7861 tgacccccat tagtcctaac actcgagcaa cggcatcttc cggcatttta cgggtaaagg
     7921 ttgctacccc gacagaccaa agcgacaaca accaaaccca aagcaataat gagccttcgt
     7981 gagcgcccca caccgcagat aaacgatatt gcaacggtaa acggctattg gagttgttca
     8041 ccacatattg cacggtaaaa tcattcaccg caaacagata aaacagcgaa ccaaaagaga
     8101 cagtcaatgc caaaaacatt gcccaagtca tcgggcgggc aagagcaatt aaggtgctat
     8161 tttgcttttc tgctccccaa agcggtaaaa ctgccaacaa gatagaaatc gctagggcta
     8221 atgccaacgt ataattgcct aattctgcaa tcatttgctt tccccttgca cattgttggc
     8281 tttttctgct tccgcctcgg ctttcatttt gcggtcggtt tccgattcac ctttcagatc
     8341 ttgttcagac acacctgatt ttttatgctg ttcttttaat ttatcgccta attccggtgg
     8401 catatagttt tcatcgtgtt ttgccagaac ttccgtagct tttaaacggg ttggttcaat
     8461 caacacgcct tgtgccacaa tgccttgccc ttcacggaat aaatccggca aaattccttc
     8521 gtattccacg gtaatcgaag gcccgatatc attgagatca aatactactt ttaaactttt
     8581 atcatcacgc tttaccgtat cttccactac cattccgccc acacggatac gctgaccaac
     8641 ttcaggcttt tgtttcggat catcattttt accgtttaca atttcagacg gcgtgtaaaa
     8701 cagatcgata ttttggctta acgcataaag tgtcaagcct gctgcgacag aaagcccaag
     8761 taatatcgaa accaccactt ttaatcttga tttgcgtctt ggattcatcg taatcaccct
     8821 tcaaaataaa tgcaaaattg cataaaaact caaaaataaa ttagtgtaag aatagcaaaa
     8881 aaccgcaaaa cattcccgat atttcaagga agttttgcga tttctcaaat caaataccta
     8941 taaagaagta tgaggctatc gttgcaaaaa ataaagttat ttcgaccgct tgtttattgt
     9001 gatgtttgct ttaatttttc ttcacgcaca atctcttttt ttgcttgagc caaaatcgct
     9061 ttctgttcac ggcgactaag ccaaatcagc ccaatcattg caatgaaact gacaccataa
     9121 gagagccata cataaaagcc gtagccaccc attgcaaaaa aatcgctgat tgattcaaat
     9181 tgaaatgtca ttgttctctc ctactctaaa ctgattttgc cagttgtttt acccaagggc
     9241 gattacgttc gtcctttaat aaggcaatgc gataacgcca aatgctaaac caagcggtaa
     9301 aaattaagct accgaaaatc gccaatagca acggaattaa catttccacc gccatagacg
     9361 gtttatcgaa tttagtgatg gtcgcccctt gatgcaaggt gttccaccat tccaccgaaa
     9421 agtgaataat cggcaagtta atcacgccaa caactgacag cacagccgcc gctttggctc
     9481 cggtttgtct gtcttggaat gcggaataaa gagccatcac gccgatataa aggaaaaata
     9541 acactaaagc ggaggttaaa cgagcgtccc acacccacca agtcccccac attggtttgc
     9601 cccaaattgc accggttgca agtgaaataa aagcgaatac taagccgata ggtgccattg
     9661 aaatcatcgc caagttagct tggcgaattt gccaaaccaa tgccaccaag cctgccaccg
     9721 ccattgagcc atatacgccc atcgaccaaa ttgctgccgg cacgtgaata aagataatgc
     9781 gatagctatc gccctgttgg taatctttcg gggcaaaagc caagccccaa acaaaagcag
     9841 ccgctaacat aatcaaactt agccaaccta aaaacggttg gattttccct agcaaatggt
     9901 actgcgtttc cgattttgca taagggtgta gccatttcca catatatttc tccaaagtaa
     9961 ataattcccc tcacccgttt acaggagagg gacgatttga gcttcgttca gaagcgaaaa
    10021 tcagggagag gggaaaaagt tgcaaatttt cataataatt cgaccgcttc ccctctctct
    10081 gaaaaacacc tctgaacgag gtgtttttcg gtctctctcc ctcaagaggg agagaggaag
    10141 ttttagttca aactaattct taatgcaccg gcaatcgcaa acggcgaaaa agttaaagta
    10201 accgctaaaa ttgctccgat aatcgccagt tgtccgctat aacccatatt taaggtggcg
    10261 gcttctaata ccgcagcggc aaaaatcagt accggtaaga ataacgggag gattaataaa
    10321 ctcagcaacg taccgccctt gcgtaagccc acagtgagtg ccacgccaat cgctcctaag
    10381 cagcttaaaa tcggggtgcc gagtaataat gtcagcacta acgcccacca aacgtgggtt
    10441 tcaagtgaaa gcaaaatggc agcaatcggt gaaagtaaaa tcaacggtaa gccggtcagc
    10501 agccagtgag caatcacttt cgctaacgca acctgcggca aggcaagcgg cagtaacatt
    10561 aattgctcga gcgaaccgtc taaataatca tcacggaata accgctcaaa ggaaagcaat
    10621 gcagaaagca aagcagctac ccacgcaatg ccgccggcaa ttttgcctaa taattcgggg
    10681 ttaggtccca ttaaaatcgg gaatacggta atcaccatta aaaaaaacca caacggattt
    10741 aaaatctccg agggtttacg aaaggcaatg gtgagttccc gctgaataat agtcaataaa
    10801 atcatacttt aaattgatct aacgaaataa tacgcacttt gtcgctttca gcagcctggt
    10861 ggctggtaaa aatcactaat ctgccttgct cgcaatgctg ttcaatatga gcaatcagat
    10921 ccgccacacc ctttttatca atagcggtaa agggttcatc taaaatccaa agtttggcgt
    10981 tagtgagcca caattttgcc aacgccacac ggcgttgctg accggctgac aaatgcgaac
    11041 aaggcaaatc ttcacgcccg atgagcgaca ctttcgtcaa tgcgtgccaa agggcatcat
    11101 catcttgcgg taactgttgg attttctggt agaaacgcaa attttcccac ggtgttaatt
    11161 ccggttttac ccccgaataa tgccctaaat aaaatagttc agaataatag tgatcacgct
    11221 gtttttgaat tgcaatatcg ttccacagca cctcaccttc cgcaggtaaa aaaagcccgg
    11281 ctaaaatacg taacaggctg gtttttccaa tgccgttatg cccttcaatc tgcacccatt
    11341 caccactttg cacggtaaaa ctgcaccctt caaacaaacg ggtttcgccc cgttcgcagg
    11401 caatctgatt aagtttaagc tgatattggg ccgtttggtt cattattttt catctggttg
    11461 aacattttag ccgaagtgta tcataagcct ttgatttaac gtagcaaata aattacttct
    11521 ttagaggtag caagcggtca aattttcaaa aagttttgca aattttgata agaatcaaac
    11581 cgcttgttac agagagagga tttccttcac aaaaggaatg gttaatttac gctgggcttg
    11641 gagagacgct ttatccaact tatccaatat tttagagagt tgctctaaat ccgttcccgc
    11701 tttttttaac agaaaatgag cgacctcatc ggacaattcc accccttttt ggtgagcatt
    11761 taactgtaaa atttggcatt tttgttcatc ggttaaatcg tttagctggt acacttcgcc
    11821 ccaagttaag cgggaacgta aatccggcaa ttggatattg agttggtgtg gtgggcaatc
    11881 ggcactgatt aacagcaagg ttttttgccc ttcgttaaac aagccttgtt gttctcgaat
    11941 ttggttaaac aggttaaaaa tagcaagttc ccattcagca tctcctgcaa tcgcttgaat
    12001 atcatctagg caaatcacat tcagcagttc ggcattatct aacaccaacg gcgagaaata
    12061 attggcttta gtgagcggaa tataactaga agtttggtta tttaaaagaa agtggttact
    12121 tactgctttc aacaaatgac ttttaccgca gctcttaccg ccccaaatgt aaaaaaacgg
    12181 ctgttgaaca tccgtaaaat ttcgtttgag ggatccaagc aacacttcgc tgttttggct
    12241 ataaaaattg tcgaaagtgt cttcatcaat ttgatgaatg ggtagaggta actgcaaggc
    12301 tttccttaaa tctctaagtt tgatattttt ctaagaatag cggaaaagca ggggtttgag
    12361 aagtaaaaat agtgagaaaa tatccactca tttttctaat gaagagatga caagcggttg
    12421 aatttccaca taattttgtc aatctgaccg aaaacccacc gttttgtgtt aaaaaaagat
    12481 tgcagttagc tcaaaaaatt gtatattcaa agctttctac ttaaaaagta gagtaaaaca
    12541 actattacaa acacaacgga gtgaatatga aaaacatgac taaattatcg ctaataacat
    12601 tagcgctagc cgcttcaagt agcgtctttg ctgcaccgaa aacctttgtt tactgcttag
    12661 aggcttcgcc ttcagcatta agcccagtgc tatcaacaga cggtgcaagc tttgatgtga
    12721 acgccctccc gatttataac aaattaaccg actttgaaga cggtacaact aatgttattc
    12781 cctctcttgc cgaaaaatgg gacatttcgg aagacggcaa aacttacacc ttccacctgc
    12841 gtaaaggcgt aaaattccac gacaataaag aatttaaacc aagccgtgag ttaaatgcag
    12901 acgatgtagt gttctccatt aaccgtcagt ttgatccaaa ccatccattc cacaaagttt
    12961 ccggcggtaa ctacgaatac tttatcggta tggatatgca aaatattatc gataaagtgg
    13021 aaaaagtgga cgatcacacc gttaaaatca gcttaaaagt gccaaatgcg ccgttcttag
    13081 ctaacttagc gatggatttc aacgccgttt actcagcgga atatgcagag caatccttaa
    13141 aggccggcaa gcctgagcgt attgatacca acccaatcgg cagcggcccg ttccagtttg
    13201 tggattacca aaaagatgcc accgttcgtt acaaagcctt tgaaaactac tggcaaggca
    13261 cagcgaaaat tgaccgctta gtgtttgcaa ttactccgga tgcatcggta cgtttagcca
    13321 agttacaaaa aggcgagtgc cacgcaatgc cttaccctaa cccggctgat atcgaagatc
    13381 tgaaaaaaga tccaaatatt gaattaatga gccaatctgg aatgaatatc ggctatttgg
    13441 cattaaattc atcgattaaa ccattagata accaaaaggt acgtcaagca ttaaatcacg
    13501 ctgtaaacaa acaagcgatt gtagatgcgg tatatcaggg agccggtcaa gtagcgaaaa
    13561 acccaattcc accaacaatg tggagctata atgaagcggt tcaagactat gactacaacc
    13621 ctgaaaaagc caaagcattg ttaaaagaag ccggttttga aaatggtttt gatactgaac
    13681 tttgggcaat gccggtatca cgtccatata acccgaatgc tcgccgtatg gctgaactta
    13741 tccaagaaga ctggaaaaaa gtgggcgtga atgcgaaaat cgtcagctat gaatggggcg
    13801 aatatctcaa acgcttacgc caaggtgaag cggcaacctc aatgattggc tggacaggcg
    13861 ataacggtga cccagataac ttcctcaaca ccttattaag ctgctcagcg gtggaagccg
    13921 gttcaaacta cgccaaattc tgccacaaac cgtttgaaga agtcgtgctt ggtgctgccc
    13981 aagaaagcga caaagcaaaa cgtaccgagc tttataaaca agctcaagtg atcttcaaag
    14041 agcaagctcc ttggattacg attgctcact ccaccgttta cttcccggtg cgtaaagaag
    14101 taaaaggtta tgtgatgagt ccgttcagct tacataactt ctacaaagta gatttagcgg
    14161 ataaataatc cgccaacaag cggtagaatt tgcagatttt tttacaaatt tgaccgcttg
    14221 tcctcccctc tttgaactac gaggggcagg ggggaaattt ggcagaagcg attgccgaag
    14281 tgagaggatt gtaaaagagg aaataaattt tctgtcttat tgattatttt cttcgttaat
    14341 tactactgtc aaatctcccc taccccctct ttgctaaaga ggggaatcag atcgagagat
    14401 cagacaactt tgatgaaaat ccaacctaag agattttaaa tgttttcatt tattttaaaa
    14461 cgtgtgctaa tggtgatccc tacctttata gcgattacgt taattacttt tgcccttgtg
    14521 cattttatcc ccggtgatcc aattgagatc cgaatggggg aacgtggatt atcgcctgag
    14581 gttcatcaac aaatgatgga acaactcggg ctgaaccgac cgttgtttga acaatacatc
    14641 agctacatca aaggtgtatt gcacggtgat cttggtaact catttcgtaa caacgaaccg
    14701 gtgctgaagg aattttttac cctattccca gccacggttg agttggcatt ttttgccctg
    14761 ctctggtcgt tgattttcgg cattattctc ggtgtgattg ctgcggtgaa aaaagaaagt
    14821 tggatttcac acactgtaac cacgctttca ctgaccggct actcaatgcc aattttctgg
    14881 tggggcttga ttttaattct ttatttctcc accccgctcg gcttaccggc ttcaggtcgt
    14941 ttaccatctg aatactggat tgaagccgaa accggtttta tgctgattga tacttggaat
    15001 tcggacgaac caggggcatt tttagcggca attaaatctc tgattttgcc gtctatcgta
    15061 ctggggacaa tccctcttgc agttgtgacc cgaatgactc gctcttcaat gttggaagtg
    15121 ttgggtgaag actatatccg caccgccaaa gccaaaggct taaacactac ccgaattgtg
    15181 attgttcacg cattaagaaa tgccttgatt ccggtggtaa cggtcgttgg cttaattgtc
    15241 gggcaactgc tttcaggagc cgttttaacg gaaaacatct tctcgtggcc gggtatcggc
    15301 aaatggatta ttgatgcaat caacagccgt gattaccctg tactacaagg ctcagtgctg
    15361 attattgcta ctattattat tttagtgaac cttacggtag atctactcta tggcattgtc
    15421 aatccgagga ttcgacatag ttagaaaaat tccttcgatt tttcccctct ttagcaacga
    15481 gggagttaca caagcggttc aaattccgca attttttaca agattatttt tagttggagt
    15541 taatgatgtc aggaataacg gcggtaaatc cacccgcacc caaaacaccg ttacaggagt
    15601 tttggtacta tttttgtcaa aatcgggggg cattaatagg acttaccttt attgcaatcg
    15661 tctttgttgc gtgcgtattc gcaccttggg ttgccccttt tgatccaatc gaacaaaatc
    15721 gcagtgcgtt attgctccct cctgcttggc ttgaaggggg gaattccgct catctgctgg
    15781 gtactgacga tattgggcgt gatattcttt cccgtattat ttatggttca agattgtccg
    15841 tctttatcgg cttagtcatt gtgctacttt cttgcgtatt cggcgtgatt ttaggtctac
    15901 ttgctggcta ctatggtggc acactcgaca tcatcattat gcgttttgtt gatattatgc
    15961 tggcgattcc aagcctgctt ttaactatcg gcgtggtcac tattttaggc ccttcattga
    16021 taaatgccgc tattgcgatt gcgattgtct ccattccaag ttatgttcgc ttgacccgtg
    16081 cttctgtatt aagcgagaaa aaccgtgatt atgttactgc ttctcgtgtt gctggtgcga
    16141 gcgtgcttcg cttaatgttt gtggtgattt tacctaactg tttagctccg cttatcgttc
    16201 agatgacgat ggggatctca aacgctattt tagaacttgc cgccctcggc ttcttaggca
    16261 ttggtgcaca gccgccaaca ccggagcttg gcacaatgct tgccgaatct cgtggcttta
    16321 tgcaatcggc aaactggctg gtgaccattc cgggtctagc gattttatcg ttagtattag
    16381 ctttcaactt aatgggtgac ggcttgcgtg acgccctcga tccaaaactg aaacaatagg
    16441 agatctaaaa tggcattatt aacggttgat caactttccg tccattttgg tgaaactaaa
    16501 acaccattta aagcggtgga tcgtatcagt tacgaagtca atgaaggcga agtattaggc
    16561 attgtgggcg aatccggttc aggaaaatcg gtaagttctc tcgctattat gggcttaatc
    16621 gatttccccg gcagggttat ggctgaaaaa ttgtatttta acggcaatga tttattggca
    16681 ttaaaaccaa aagaaaaaca acagattgta ggggctgatg tctcaatgat cttccaagat
    16741 gcaatgacca gcttaaatcc gagctatact gtgggctatc agattatgga agccctaaaa
    16801 gtgcatcaag gtggctcaaa agccagccgt cgtgagcgag cgattgagtt gctgacgatg
    16861 gtcggtattc ccgatcctga atcccgttta gaagtttatc cgcaccagct ttcgggtggt
    16921 atgagccaga gagtgatgat tgcgatggcg attgcctgtc gcccgaaatt attgattgcc
    16981 gatgagccga ctactgcgtt agatgtgacg attcaagctc aaatcattga tttattactt
    17041 gaattacaac gcaaagaaaa tatggcgttg attttaatca cgcacgattt agcgttagtt
    17101 gccgagtctg cccatcgcat tatcgtgatg tatgcagggc aagtcgtgga agagggcaaa
    17161 gccgagcaga tattcaaagc accactgcac ccttacaccc aagcattgct caaagcctta
    17221 ccggaatttg ccgaagggaa atcccgcctg caatcactac cgggcgtagt gccgggcaaa
    17281 tatgaccgcc cacaaggttg cttactcaac cctcgctgcc cgtatgcaac cgaaaaatgc
    17341 cgaaccattg aaccggcaat gcagataatc aacggcagac aggtgaaatg ccacacgcca
    17401 ctgaatgcac agggtgagcc gataaggata gctgtataac gtcataaaga gtagggacgc
    17461 aatgcttcgc gtccgttaca agcggtgatt tttaaccgat ttttgcaaaa taacgatagt
    17521 ggacgcaaag cattgcgtcc ctacattttc cgagaaggaa aacagaatga aagaaaataa
    17581 ttctctccca ccattcctca aagcagtgga cttaaaaaaa tactacccag ttaaaaaggg
    17641 aatgttcgct aaaccgaaaa cggtaaaagc gctggatggt gtctctttta cccttgaacg
    17701 tggcaaaacc cttgcgattg ttggcgaatc cggctgtgga aaatcaactt tggggcgaat
    17761 gctcactatg attgaaagcc caaccgaagg tgaactgttc tacaacgggc agaatttctt
    17821 agtcaatgac aaagaaacgg ctcaactacg ccgtaaaaaa atccaaattg tgtttcagaa
    17881 cccgtatagc tcgctcaatc cacgcaaaaa agtaggtagc attttagaag aaccattatt
    17941 gattaacacc aacttatccg caaaagaacg caaagaaaaa gtgttggaaa tgatggcgaa
    18001 agtcggctta aaaccggaat tttacgaccg ttatccgcat atgttttcgg gcggacaacg
    18061 ccagcgaatt gcgattgctc ggggcttaat gttgcagcct gatattgtgg ttgccgatga
    18121 acccgtttcc gcattagatg tttcggttcg ggcgcaagtg ttgaatttga tgatggattt
    18181 gcaagaagaa atgggcttgt cttacgtttt catctcgcac gatttatccg tagtggaaca
    18241 tattgccgat gaagtgatgg tgatgtattt agggcgttgc gtagaacaag gggataccaa
    18301 aactatcttc agcaatccac gtcaccctta tacacaagcg ttactctccg caacccctcg
    18361 tttgaacccg gagcaacgcc gtgagcggat taaactgact ggcgaactac caagcccgct
    18421 taatccacca aaaggctgtg cctttaacgc ccgttgcaga tttgcaaccg atcgttgcta
    18481 tgtggagcga ccagagctga aaacctatca agacggtact cgcattgctt gttttgtggt
    18541 ggaggaaaat aattaggcaa cgctcgctat ttaaaaggtt aaagtttttc aactttaacc
    18601 tttatttttc atacttaata ctcctcatct tttgtagcaa aatctttcat taatttgctg
    18661 atatgctcac aatggtgttt aaatgacaat acgggcaaat aatcaaatgc gttttaacgc
    18721 caatcttctc ttttaaagtg agttttcgtt cctttgagtc agaaattaac cttgttactt
    18781 gtcggcaatt catctatttc tctccgttaa tttccttgaa agacattgtt gtaactgcag
    18841 ccttgctcga tagattaatg tatataaatt atctgatgta atatttacta ctcgacaaat
    18901 ttcatctgag gttgcctcta aatattccct catcataaat accctagctt gttttgcagg
    18961 taaattgctt aagcaaactt caaataatat ccaaaattct ttggaataaa cagcttcttc
    19021 ctgccagcta gaaggataat attcttcttt ccaatgccca taattatcaa aaaagtgatt
    19081 ctcttcgtca tcatcagcta gatcactttc tagtactata cgatcttttt tacgtaaata
    19141 atcaataatt ttatttttta gaatagcaaa tatccaggtt ttcaatgctg ctttacgctg
    19201 gaaattatca atatttttta ttgcattaac gaatgcttct tgaaccatat cttcagcaag
    19261 agcaatatct tgtaattgta actgagcaaa tttcaacatt tgctgacgaa tatcggcaag
    19321 ctgttccgat gaaatatcta aagaaatctt g
//
LOCUS       DANMBQ010000033        19221 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.033, whole genome shotgun sequence.
ACCESSION   DANMBQ010000033 DANMBQ010000000
VERSION     DANMBQ010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19221
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.033"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            39..512
                     /gene="nrdG"
                     /locus_tag="PXE92_001030"
     CDS             39..512
                     /gene="nrdG"
                     /locus_tag="PXE92_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HDL5760294.1"
                     /translation="MENLRFSSEQIVWQEVPNETSLAFLITGCPLGCKGCHSADSWKA
                     CLGKELSSEYLSERLKRYQGLISCVLFMGGEWEAEKLLPLLQLAKKQGLNTCLYSGLE
                     QHEIAETLLHELTYLKTGRWIAERGGLESLTTNQRFTDLRNNQNLNHLFIRGASI"
     gene            509..2290
                     /gene="nrdD"
                     /locus_tag="PXE92_001031"
     CDS             509..2290
                     /gene="nrdD"
                     /locus_tag="PXE92_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HDL5760295.1"
                     /translation="MIRLQPTQLDGKLHFINQYIQAKNAADGSKMDANANVTQKNIAT
                     MEQELMKDFFVQINRAKVSEKIAKIFGKETACEYLRQIEAHEIYVHDETSLKPYCVSV
                     TMYPFLRDGLTKLGGESKAPKHLASFCGSFINFVFAVSSQFAGAVATVEFLTYFDYFA
                     RKDYGDNYLQTHRSDIENHLQQVVYSINQPAAARGYQSVFWNISVYDKFYFEAMFSRF
                     VFPDFEKPNWETTSKLQLFFMQWFNKERSKAILTFPVVTAAMLTEKGKCKDDEFANQM
                     AKELSQGNSFFIYQSDNPDSLASCCRLRNEISDHSFSYSLGAGGVATGSINVITINMN
                     RLVQDNRDLSEEVSKIHKYQYAYRKLMEEYLAAGMLPVYDAGFISLHKQFLTIGINGM
                     AEAAESQGLTVGYNPDYIDFVQSRLKIIFQANQAAGEKYGVKFNTEFVPAENLGVKNA
                     KWDKEDGYFVPRDCYNSYFYVVEDEEINALDKFLLHGRELIEWLDGGSALHLNLDEAL
                     TQTGYRSLLDTAAKTGCNYFCINVKITICNECSHIDKRTLHSCSKCGSDNIDYGTRVI
                     GYLKRVSAFSSARQKEHSLRFYHREAA"
     regulatory      2347..2443
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2500..3318
                     /gene="thiM"
                     /locus_tag="PXE92_001032"
     CDS             2500..3318
                     /gene="thiM"
                     /locus_tag="PXE92_001032"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HDL5760296.1"
                     /translation="MTTSLPYHSHYLQKIRQNRPLVHNITNIVAANFSANGLLALGAS
                     PIMAAAIEEMESVPALSNAVVINIGTLIGKEVEAMELAGKTANRLGIPLILDPVGVGA
                     TPFRRQTVETLVDQIHFTAIRGNAGELATLAGVEWQAKGVDAGEGSHNVVEIAQQIAK
                     RYQTLVAISGETDVVSSGSHTALLHNGSPMFPKITASGCLLSAVCGAFLAVADKEHYF
                     NALIEACAAYAVAGEVAAQALKPTQYGQFAVNLLDTLGALTPETVEQYVRVEYV"
     gene            3311..4624
                     /locus_tag="PXE92_001033"
     CDS             3311..4624
                     /locus_tag="PXE92_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5760297.1"
                     /translation="MSKTHSNPTKVAVASMVGTAIEYFDNYIYTMAAVLVFNVQFFNS
                     DDPVSNQLMSLSVLALAFFTRPMGSILFGHFGDKYGRKQTLIASLLLMGLSTVAIGLL
                     PNYAAIGIWATVLLCLCRIGQGLGLGGEWGGAALVATEHAPKHKRAFFGIFPQMGAPI
                     GLLLANGAFYLVNLIYGEQTFLDWAWRIPFVASIVMIAIGLYIRIKISESPIFLKAEQ
                     QGKNRHTPLKTLFSQHLKPFMIGVLIATAGYVLFYILVAFTPIFVKSPVAVSQAGHAT
                     GLGLPVNLYTQYLLITSVIFGIAIFFSGIYSDKIGRRLLLLLATGATVVYGLTMPFFL
                     ENGTPTSIFIFLTIGMILIGLSFGPMAVILPELFPTEVRYTGASLAYTAAGILGASVF
                     TIIAVKINENFGLFGVGGYLSVASLLSFWALWQVHETKDLELEEI"
     regulatory      4760..4856
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4924..6453
                     /gene="thiE"
                     /locus_tag="PXE92_001034"
     CDS             4924..6453
                     /gene="thiE"
                     /locus_tag="PXE92_001034"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDL5760298.1"
                     /translation="MSNYSNSPYQPNVIWTVAGSDSCAGAGLQTDLHTFHDFNLVGCS
                     VVTSVTAQHPHGVLCVTPVDDHTFRQQFEALLVQGYPNAIKIGLLCSQAQVEILCEYI
                     QKIRAESSHYCYVVYDPVAVASSGQALSDSILLQIVQQKLYPLVDLITPNGTELALLS
                     DTEIQTFGDVKTASHKLFAQGIKAVLAKGGHFEWLGETVRDYLLTANEIYAFSHARQQ
                     SVNTHGTGCTYASAVGAMLATGFDLADAVTVATAYLQKGLSEKQGRGQTALSSLCHTG
                     YPDDIAFFPQTELISAPLKLPKEPFAPTEYQLGLYPVVDSVKWLERLILVGVKTLQIR
                     IKNRPLAEIEQEIAHSVALAKQHNVRLFVNDYWQLAMKYQAYGVHLGQEDLATADLNA
                     IQQSGLRLGVSTHCYFEIMRALAVKPSYIAFGHVFPTQTKVMPSQPQGLTNLAKYVAL
                     VAPLNIPTVAIGGINEQSIENVMHTGVGSAAVVSAVTQAKDWQQAVKNLAKFANGGRN
                     E"
     gene            6446..7618
                     /gene="cytX"
                     /locus_tag="PXE92_001035"
     CDS             6446..7618
                     /gene="cytX"
                     /locus_tag="PXE92_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HDL5760299.1"
                     /translation="MNRTLSTLNSGLIWAGAGISASAIVVGTWIAPLGWQQGLLAIVL
                     GHLLGGILFFAAGLIGAKTGKNAMQTVQISFGRGSVFFSLANVLQLVGWTAIMIYTGA
                     EISNALSLALWEYSAFSLWAIVLGLLIVLWLFTGSNQVGKFKLVTLIAMFLLTLWLSI
                     KVLNGQENFPVSGEMPFSTAVELATIMPLSWLPLVSDYTAKAKKPFAATLSATIGYLI
                     TSAWMYALGLGMVLFTGQTEIAPMLLMTGMSLIGIMVMILSTVTTTFLDAYSAGVSAG
                     NITAKFKETPTAILVTIIGTLLAISLPVTQYENFLLLIGSVFAPMIAVQIADFFVLKR
                     HQAQPNVDWVAAGLWLVGFVLYHLLSYHQVHLLLGLTIPVMLVIFLSTIFVRRFTK"
     gene            7657..7866
                     /locus_tag="PXE92_001036"
     CDS             7657..7866
                     /locus_tag="PXE92_001036"
                     /inference="COORDINATES: protein motif:HMM:NF015737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5760300.1"
                     /translation="MESLVLNNDWVVTPQAQLAYHTINGKADEERLNLLVARAGVRVA
                     KGFALNNGWNLQPYAEVNGIAEKGQ"
     gene            7874..8050
                     /locus_tag="PXE92_001037"
     CDS             7874..8050
                     /locus_tag="PXE92_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5760301.1"
                     /translation="MQVNQYQFGVAENKGRVQGSLGLSAGNGNHRLGLEASVASGKKL
                     KQPFNVLVNYRYQW"
     gene            complement(8091..9947)
                     /gene="sppA"
                     /locus_tag="PXE92_001038"
     CDS             complement(8091..9947)
                     /gene="sppA"
                     /locus_tag="PXE92_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDL5760302.1"
                     /translation="MLTILKAFYRIFRCIRECVINLFFILFILLLVPVVAFISSSGST
                     QKPVFNQGALRLNLDGYLADNREEFTDFYRLVQSELGSSEPFKISTFDVVQAISHAKN
                     DPKITGLVLDLQKLQSADFSSLDFIGNEINNFKQSGKPVIAVGEDYSQKQYYLASFAD
                     EIYLNKVGAVDLKGLNYSNTYFKTLLDKIEAEPHIFRVGTYKSAVEPFMRDDMSEEAK
                     QNARGWLNGTWQQTVATLAQNRNIEPQALDLSPANYIEKYKQAKGDDAQLALNQKWVS
                     QLVSSQESRDKLIAQFGKNSEGSYNQIEFLDYMTELNDRFAEVNAPKIAVVNVEGAIA
                     GGESDEMNVGSETLVKLLQQARDDKNVEGLILRINSPGGSAVASELIRQEVEAFQQAG
                     KPVVASMGGMAASGGYWIAATSDKIIASPNTLTGSIGIFGLAVTFEKTAKNLGVSEDG
                     IATSALAQQAGLKSLPQEQAEVLQIGIENGYDRFLELVSRGRKMPKEVVDKVAQGQVW
                     LGTDALKHGLVDELGNFNVAYNALSELINQKREAENQPKVEQFGLQWFAEQDDSLFGT
                     LARDFKAQLQFSVANWLDLPLLKQPQQQLETLSRFNDPKQMYLYCLNCGKID"
     gene            10050..10613
                     /locus_tag="PXE92_001039"
     CDS             10050..10613
                     /locus_tag="PXE92_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL5760303.1"
                     /translation="MQILDLLHHRRSNKKFGDKAPNAEQLEQILKAGLRVPDHGRLKP
                     YRFVVIEKSGMPQFGECLKSAVAEFDMGEERLKKAEKLANQAPMIIGVVATLDDSIAK
                     VPSWEQMITAGCATYAIQLAANAQGFDTVWITNKWINGSALRSAFGCQESDKIIALIM
                     LGSPAEGEQIALAPESESLEGFVRYLK"
     gene            complement(10684..13008)
                     /locus_tag="PXE92_001040"
     CDS             complement(10684..13008)
                     /locus_tag="PXE92_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HDL5760304.1"
                     /translation="MTDLNLKISQIIAGELNVGSHQILAAITLLGEGNTIPFIARYRK
                     EVTGGLDDTQLRHFETRLIYLREMDERRQTILKSIEEQGKLTDELKAKILSSESKTEL
                     EDLYLPYKPKRRTRGQIAIEAGLEPLADSLWNDPKQDPETLAANFVDAEKGVADTKAA
                     LDGARYILMERFSEDAELLAKLRQYLTAYATLESKVIDGKEEEGEKFRDYFAHSEPFN
                     SVPSHRALAMFRGRNEGVLSLSLNADPTAEEGTKSSHCEEIIREHLGVIFNNQPADKW
                     REQVIAWTWKIKAALHLETELMATLCEKAEEEAIDVFARNLSALLMAAPAGARNTMGL
                     DPGLRTGVKVAVVDNTGKLLDTATIYPHTGREAEAQLAIFSLIKQHNVELIAIGNGTA
                     SRETERFAKAVIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIAR
                     RLQDPLAELVKIEPKAIGVGQYQHDVNQSQLARKLDAVVEDCVNAVGVDLNTASAPLL
                     ARVAGMTKTLAQNIVAFRDENGRFTSRSELKKVPRLGPKAFEQCAGFMRIIGGKNALD
                     ASSVHPEAYPVVEKILQATTSTLAELMGNNSKIHSLNAKDFVDEQFGLPTVNDIFKEL
                     EKPGRDPRGEFKTAVFMDGVEEITDLKAGMILEGTVTNVANFGAFVDIGVHQDGLVHI
                     SMLSNSFVEDPHTVVKAGDVVKVKVLEVDAARKRIALTMRLDDKPTDKKEPTSGRNSA
                     EICKNTQKNDRLQSNNRNAFGNNAFADALKGWKK"
     gene            complement(13008..13562)
                     /gene="pilW"
                     /locus_tag="PXE92_001041"
     CDS             complement(13008..13562)
                     /gene="pilW"
                     /locus_tag="PXE92_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HDL5760305.1"
                     /translation="MFAKFFPKMTACILIFLLAACSSLPPSSSEVEFNRSEAVKARIN
                     LALAYLEQNDFPKAKQNIDKALAHDEKDYLPYSVLAYYYQQTGDAENAEKAYQTALKL
                     SQNRPDVLNNYGTFLCKQGQFQQAYQQFEQAVKSKAPYYHQADSLENMVLCAKKEPNL
                     QKIAETLTELEKLDKPRANLLKEN"
     gene            13782..14033
                     /locus_tag="PXE92_001042"
     CDS             13782..14033
                     /locus_tag="PXE92_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5760306.1"
                     /translation="MKIVVFQRKALKQLRKIPTGAEIRRKCDDLAYFPYCANIKALTN
                     HQYDYRFRVGNYRIFFNIEGETMNIVSIEEVKKRDERTY"
     gene            14017..14364
                     /locus_tag="PXE92_001043"
     CDS             14017..14364
                     /locus_tag="PXE92_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5760307.1"
                     /translation="MKELTNIQYLNNEEGKPAFAVLPIATLEWLKQKANIKTAIETGI
                     PSAVAGIALDNNYSALRAWREYLGLTQEEVAQRLGISQSAYSQHENAKNLRKTTRIKI
                     AYALGLNEEQLDF"
     gene            complement(14405..15565)
                     /gene="trmG/rlmN"
                     /locus_tag="PXE92_001044"
     CDS             complement(14405..15565)
                     /gene="trmG/rlmN"
                     /locus_tag="PXE92_001044"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HDL5760308.1"
                     /translation="MSELITNAGCGSAEQPKEKINLLNLNRQEMRELFAEMGEKPFRA
                     DQLMKWIYHFGEENFDNMSNINKVLREKLKRIAEIKAPEVAVEQRSADGTIKWAMQVG
                     DQQIETVYIPEDDRATLCVSSQVGCALACTFCSTAQQGFNRNLSVAEIIGQVWRASKI
                     IGNFGVTGVRPITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVV
                     PALDKMREQIDVALAISLHAPNDELRDELVPINKKYNIKMLMDSVNKYREVSNANHGK
                     VTIEYVMLDHVNDSTNHAHQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQK
                     TLMEYGFTVTVRKTRGDDIDAACGQLAGDVIDRTKRTLEKRKFGQGIAVKTH"
     gene            15825..16721
                     /locus_tag="PXE92_001045"
     CDS             15825..16721
                     /locus_tag="PXE92_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HDL5760309.1"
                     /translation="MKLSTIKKALVLTFGLSAAMAMAEPFKVVTTFTVIQDIAQNVAG
                     DKATVESITKPGAEIHDYQPTPKDIVKAQKADLVLWNGMNLERWFERFFENVKGKPAV
                     VVTEGITPMPITEGEYKNLPNPHAWMSTDNALIYIENIRAALVKYDPQNADTYNANAK
                     AYAEKVKGIAEPLRQRLAFIPEQQRWLVTSEGAFSYLAKDYNLKELYLWAINAEEQGS
                     PKQVKKVIDGVKANKIPVVFSESTVSDKPAKQVAKETGALYGGVIYVDSLSEKDGPVP
                     TYLDLLKVTIGTIVEGFERSKK"
     gene            16734..17477
                     /locus_tag="PXE92_001046"
     CDS             16734..17477
                     /locus_tag="PXE92_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDL5760310.1"
                     /translation="MTTVSASISVENLSVRYNNGHIALQDVSFHLENGTICALIGVNG
                     GGKSTLFKSLMGLVKPLTGSVKLSQLPIAKALKQNLVSYVPQSEEVDWQFPVSVYDVV
                     MMGRYGYMNFLRRPSQTDKLKVEQAMQRLDVLHLKDRQIGELSGGQKKRVFLARALAQ
                     ESKIILLDEPFTGVDVKTENAIVELLKQLKNEGHLILVSTHNLASVPSFCDQVLMVNR
                     TLLAKGKTEEIFNNQNLERVFGGLLHYQK"
     gene            complement(17534..18343)
                     /locus_tag="PXE92_001047"
     CDS             complement(17534..18343)
                     /locus_tag="PXE92_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL5760311.1"
                     /translation="MLNWILEPLQFEFMQIALITAILVAGVSAVLSCYLVLKGWSLMG
                     DAISHAVLPGVVISSLAGLPLSIGAFFSGLGCALSVGYLKENSRLKEDTVMGIVFSGM
                     FAFGILLFTAFNTGEHLTHILFGNLLGVTKSDLLQTLLISLFTFVVMVAKRKDFLLYC
                     FDVNQAKVAGLPVRLLHYGLLSLLALTIISAMQVVGVILVVAMLITPGITAYLLTKRF
                     DSMLLIALGVAIFSSVFGTLLSYHIDAATGPTIILVQAAIFFLSFAYSKIH"
     gene            complement(18336..19196)
                     /locus_tag="PXE92_001048"
     CDS             complement(18336..19196)
                     /locus_tag="PXE92_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL5760312.1"
                     /translation="MLDLLLEPFTYNYMQKAIFVSMGVGLVCAFLSAFLMLKGWSLIG
                     DALSHAVVPGVAIAYALKLPYAFGAFFSGILAALSILWVKSLTKIKEDAVIGFIFTTF
                     FALGMFIVSLNPTSVDVNSIVMGNILGIADDDLWQVVLIIAISLLGLILFWKDLLLVF
                     FDEHHALSVGLSPLRYKVIFFTLLSACVVVALQTVGAILVIAMVVTPGATAYLLTDRF
                     PRLVLIAMLIGTLTSGIGAYLSYFLDGATGAVIVCLQTLIFLFAFCFAPKYGLITQKR
                     KLHRVEVQNA"
BASE COUNT         5503 a         4295 c         4072 g         5351 t
ORIGIN      
        1 tgttaaaaaa cacaatatat tgtgttaatg aattagtaat ggaaaatctc agattcagct
       61 cggaacaaat tgtttggcaa gaagtgccga atgagacctc acttgctttt ctgattacag
      121 gctgcccgct tggctgtaaa ggttgccata gtgcggatag ctggaaagcc tgtcttggga
      181 aagagcttag cagtgaatat ctctctgaac gcctaaaacg ctaccaaggc ttaattagct
      241 gcgtattgtt tatgggcgga gaatgggaag cagaaaaatt actgccgctg ttgcaactgg
      301 caaaaaaaca ggggctaaac acctgtcttt atagtggttt ggagcagcac gaaatcgccg
      361 agactttatt acacgagcta acctacttaa aaaccgggcg ttggattgcc gaacgaggag
      421 gattggaaag tttaaccacc aaccaacgct ttactgattt acgcaataac caaaatctta
      481 accatctttt tattcgagga gcttcaatat gattcgctta caaccgacac aattagacgg
      541 aaaactacat ttcattaacc aatatattca agccaaaaat gccgcagacg gttcaaaaat
      601 ggacgccaac gctaacgtca cgcaaaaaaa catagcgaca atggaacagg agctaatgaa
      661 agattttttt gtgcaaatca accgagcaaa agtgagtgaa aaaattgcaa aaatttttgg
      721 aaaagaaacc gcttgtgaat atttacgtca aatcgaagca cacgaaattt acgtacacga
      781 tgaaaccagc ctaaaaccct actgcgtttc agtcactatg taccctttct tgcgtgatgg
      841 tttgactaaa ctcggcggcg aatccaaagc cccgaaacat ttagcctcat tctgcggttc
      901 ttttatcaat tttgtctttg cagtcagttc tcagtttgcc ggtgcagtcg ccacggttga
      961 atttctgacc tattttgact attttgcccg caaagattac ggcgataatt acttacagac
     1021 tcatcgttca gatattgaaa accacctgca gcaggttgtg tatagcatca accaaccggc
     1081 agccgctcgt ggttatcaaa gcgtcttttg gaatatttca gtgtatgaca aattctattt
     1141 tgaagcgatg tttagccgtt ttgtttttcc tgattttgag aaaccaaatt gggaaaccac
     1201 ttcaaaatta caacttttct ttatgcaatg gttcaataaa gagcgaagca aagcgattct
     1261 cactttccct gttgtgaccg cagcaatgct taccgaaaag ggcaaatgta aagatgacga
     1321 gtttgccaat caaatggcaa aagagctatc tcaaggcaat tcattcttta tttatcaatc
     1381 agataatccg gattcccttg cttcttgctg ccgcttgaga aatgaaatca gcgatcatag
     1441 cttctcctat tcattagggg ctggaggtgt tgcgacaggt tcaatcaatg taattactat
     1501 taatatgaac cgtttggtgc aagataaccg tgatttaagc gaagaagtca gcaagatcca
     1561 taaatatcaa tacgcttacc gcaaactgat ggaagagtat ttagctgccg gtatgttgcc
     1621 ggtttacgat gccggtttta tttcactgca taaacaattc ctgactattg gcattaacgg
     1681 aatggcagaa gctgctgaat cacaaggttt aaccgtaggt tacaatccag actatattga
     1741 ttttgtgcaa tctcggttaa aaattatttt ccaagctaac caagcagccg gtgaaaagta
     1801 tggggtaaaa tttaataccg aatttgtgcc tgctgaaaat ttaggggtca aaaacgccaa
     1861 atgggacaaa gaggacggct atttcgtacc acgagattgc tacaattcct atttctatgt
     1921 ggtagaagat gaagaaatta atgctttgga taaattctta ctgcacggca gagagctgat
     1981 tgaatggctg gacggaggct ccgctctaca cttgaattta gacgaagcct taacccaaac
     2041 cggatatcgc tccttgctgg ataccgccgc taaaaccggc tgcaattatt tttgtattaa
     2101 cgttaaaatc acgatttgca acgaatgtag ccacatcgac aaacgcacgt tgcacagttg
     2161 tagcaaatgt ggctccgata atattgatta cggcactcgg gtaatcggct atttaaaacg
     2221 agtctccgcc tttagttccg cccgccaaaa agagcacagc ttgcgtttct atcaccgaga
     2281 agcagcttaa ttgaaaactg cagttgtagc cctttacaac cgctttttta gtgattatat
     2341 taaagcctca tttagtcggg gtgcttgcct aagggcaagc tgagaaatac ccgttgaacc
     2401 tgatgcagtt agcactgacg taggaaacta aaggcgtaaa cccatctatt ccccgttggt
     2461 gttggtgcgt tgtttttcaa tcatattaag gaataaacga tgaccacatc actcccctat
     2521 cactcgcatt atttgcaaaa aattcgacaa aatcgaccgc ttgttcacaa cattaccaac
     2581 attgttgccg ctaatttttc tgccaacggc ttattggctc ttggtgcttc tcccattatg
     2641 gcagctgcta ttgaggagat ggaatccgtg ccggcactca gtaacgccgt ggtgattaat
     2701 atcggcacgc ttatcggcaa agaagtagaa gcaatggagc ttgctggcaa aaccgccaac
     2761 cgtttaggta ttccgctcat tcttgaccct gtcggcgttg gagcaacacc tttccgccgt
     2821 caaacagttg aaaccttagt cgaccaaatt cacttcaccg ccattcgtgg aaatgcgggg
     2881 gaactagcta ccctcgccgg tgtagaatgg caagccaaag gcgttgatgc cggcgaaggc
     2941 tcgcataatg tggttgaaat cgcccaacag attgccaaac gttaccaaac cttagtcgca
     3001 atcagtggtg aaaccgatgt ggtaagctct ggctcacaca cagctttatt gcacaacggc
     3061 agcccgatgt tccccaaaat taccgcttca ggctgtttat taagtgcggt atgcggggca
     3121 ttcttagccg ttgccgacaa agagcactat ttcaacgcac ttattgaggc ttgcgccgct
     3181 tatgccgttg caggcgaagt ggctgctcaa gcactcaaac caactcaata cgggcaattt
     3241 gccgtcaatc tgctggatac ccttggggca ttaacgcctg aaaccgttga gcaatatgtg
     3301 agggttgaat atgtctaaaa ctcactcaaa cccaactaaa gtggcggttg cctcaatggt
     3361 cggcacggcg attgaatatt ttgataacta catctacacg atggcagcag tgctggtgtt
     3421 taatgtgcag ttttttaata gcgatgatcc ggtttccaac caattaatgt cgctttccgt
     3481 actagctctt gcctttttca cccgcccgat ggggtcgatt ttattcgggc atttcggcga
     3541 taaatacgga cgcaaacaaa ctctgattgc ctcgctctta ttaatgggct tatctaccgt
     3601 agcaatcggg cttttgccta attatgccgc cattggcatt tgggcaaccg tgttactctg
     3661 cctctgtaga atcggacaag gtttaggctt aggcggcgaa tggggcggag ctgctctcgt
     3721 tgccactgaa cacgccccga aacacaagcg ggcatttttt ggtatttttc cgcaaatggg
     3781 cgccccaatc ggcttgctgt tggcaaacgg agcgttctac ttggtgaatt taatttacgg
     3841 tgaacaaacc ttcttggatt gggcgtggcg aattccgttt gtcgcttcta ttgtgatgat
     3901 cgccattggg ctttatatcc gaattaagat cagcgaaagc ccgattttcc ttaaagcgga
     3961 acaacaaggt aaaaaccgcc ataccccgct taaaactttg tttagccaac acctcaagcc
     4021 ttttatgatc ggcgtgctga ttgccaccgc cggctatgtg ttgttctaca ttttagttgc
     4081 tttcaccccg attttcgtca aaagcccggt ggcagtttct caagcaggac acgctacagg
     4141 cttaggttta ccggtaaatc tctacaccca atatttgctg attacctccg tgattttcgg
     4201 cattgcgatt ttcttctccg gcatttattc agacaaaatc ggacgccgtt tactgctgtt
     4261 acttgccaca ggagcaaccg tagtttacgg cttaacaatg ccgtttttcc tcgaaaacgg
     4321 cacaccgact tcgatcttta ttttcctcac cattggaatg atcttaatcg gcttaagctt
     4381 cggcccgatg gcagtaattc tacccgaact cttcccaaca gaagtacgtt acacaggggc
     4441 ttcgcttgcc tacaccgctg ccggtatttt aggagctagc gtgttcacta ttattgcggt
     4501 caaaatcaat gaaaatttcg gcttattcgg tgtaggcggc tatttatcgg ttgcctcatt
     4561 actgagcttc tgggcattgt ggcaagtcca cgaaaccaaa gatttggaat tagaggagat
     4621 ataaaaaacc actcacttaa cgacggggca agttaccacc ttgccccaag atgagggaat
     4681 gcaaatttcc ctctaataga cttcacaacg gatattttgc atttttttat aaaaaataac
     4741 cgcttgtaag ctatactaaa aacgcttgtc ggagtgccgt aaggctgaga tcgcaacagc
     4801 gagatccgtg gaacctgtag gttagtacct gcgtagggaa caagttttac ccaaattcag
     4861 attttgggat cattaccaca tctctggcaa gcaaaaccct aagcatatta tgaggatttt
     4921 gcgatgtcta attattcaaa ctctccatac caacctaacg tcatttggac ggttgccggc
     4981 tcagattcct gtgccggtgc cggtctgcaa accgatttac atacctttca cgattttaac
     5041 ctagtgggtt gttcagtagt tacttctgta acggctcaac atccgcacgg tgtgctgtgt
     5101 gtaacgcctg ttgatgatca caccttccgc caacagtttg aagccttgct ggttcaaggc
     5161 tacccgaacg caatcaaaat cggcttactc tgctcgcaag cacaagtaga gatcttgtgt
     5221 gaatatatcc aaaaaatccg tgcagaaagc tcgcattatt gttatgtggt ttacgaccct
     5281 gtggcagtgg caagcagtgg gcaggcgtta tccgacagta ttttattgca gatagtgcaa
     5341 caaaaattgt atccgctggt ggatttaatc actccaaacg gcactgaact cgctttatta
     5401 agcgacacag aaatccagac ctttggtgat gtgaaaaccg ctagccacaa actgtttgca
     5461 cagggaatca aagccgtgtt agccaaaggt ggacattttg aatggctggg ggaaacggta
     5521 agagattatc tgctgactgc aaatgaaatt tatgccttta gtcacgcccg acagcaaagt
     5581 gtgaataccc atggcacagg ttgcacctat gcttcagcgg ttggagcgat gttggcaacc
     5641 ggctttgatt tagctgatgc cgtcactgtt gccaccgctt atttgcaaaa aggcttatcg
     5701 gaaaaacaag gcagagggca aactgcttta agttcacttt gccacaccgg ctaccctgat
     5761 gatatcgctt tcttcccaca aaccgagctg atttctgccc ctcttaaatt gccgaaagag
     5821 ccttttgctc caacggaata tcaacttggg ctttaccctg ttgtagatag cgttaaatgg
     5881 cttgaacgct taattcttgt aggggtaaaa accttgcaaa ttagaatcaa aaatcgaccg
     5941 cttgcagaga ttgagcaaga aattgcccat tcggtcgcac tggcgaaaca gcacaatgtg
     6001 cgtttgtttg taaatgatta ctggcagtta gccatgaagt atcaggctta cggcgtgcat
     6061 ttagggcagg aggatttagc caccgccgat ttaaatgcaa ttcagcaatc tgggttacgg
     6121 cttggtgttt caacccactg ctactttgaa ataatgcggg cattggcggt gaaaccgtct
     6181 tatatcgctt ttggccacgt tttccctact caaaccaaag taatgccgtc tcaaccacaa
     6241 ggcttaacaa atttagccaa atatgttgct ctcgttgcac cgcttaacat tccaactgtg
     6301 gcgattggtg gaattaatga gcaaagcatt gaaaatgtaa tgcataccgg tgtcggcagt
     6361 gccgcggtgg taagtgccgt tacccaagca aaagattggc aacaagcggt caaaaactta
     6421 gcaaaatttg caaatggagg ccgtaatgaa tagaactctt agtacgctaa acagtggttt
     6481 gatttgggcg ggagcgggca ttagtgccag tgcaatcgtg gttggcactt ggattgcccc
     6541 acttggctgg caacaaggct tgctggcgat agtgctaggg catttattag gcggcatttt
     6601 gttttttgct gccggcttaa ttggggcgaa aaccggcaaa aatgcgatgc aaacggtgca
     6661 aatttccttt ggcagaggct cggtgttttt ctcccttgcc aatgtgctac agcttgttgg
     6721 ttggacagcc attatgatct atacaggggc agagatcagt aatgccctta gccttgcctt
     6781 atgggaatat tcggctttct cgctttgggc aatcgtgctt gggttgctga ttgtgctatg
     6841 gttatttacc ggctctaatc aggtcggaaa attcaagtta gtgacattga tagcgatgtt
     6901 tttgctcacc ttatggctaa gcattaaggt attgaatggg caggaaaatt ttcctgtttc
     6961 gggtgaaatg ccgtttagca ccgcagtgga attagcaact attatgcctc tttcgtggct
     7021 acctttggta tcagactata ccgctaaagc gaaaaagcct tttgccgcga ccctttcggc
     7081 gaccataggc tatttgatca ccagtgcgtg gatgtatgcg ttaggtctgg gtatggtgct
     7141 atttaccggg caaaccgaaa ttgcccctat gttactaatg acaggaatga gccttatcgg
     7201 cattatggtg atgattcttt cgactgtgac taccacgttt cttgatgcct attccgccgg
     7261 tgtcagtgcc ggcaatatca cggcaaaatt caaagaaacc ccaaccgcca ttctagtcac
     7321 aatcatcggc acgctactgg caatcagttt accggttacc caatatgaaa atttcctgct
     7381 gctgataggc tcggtattcg ccccgatgat tgccgtgcaa attgcggatt tctttgtgtt
     7441 aaaacgccac caagcacagc ctaatgttga ttgggttgct gccggattat ggcttgtcgg
     7501 cttcgtgcta taccaccttc tctcttacca ccaagtgcat ttactactcg gcttaaccat
     7561 tccagtgatg ttagtgattt ttctcagcac catttttgtg aggaggttca caaaatagaa
     7621 agataagcgg ttcaattgga gtgaaaattt gctaaaattg agtcgcttgt tttaaacaat
     7681 gactgggtag taacaccaca agctcaactt gcctaccaca ccattaacgg taaagccgat
     7741 gaggaacggt taaatctttt agttgcccgt gccggcgtaa gagtagcaaa aggctttgcc
     7801 ttgaataatg gttggaatct gcaaccttat gcggaagtaa acggcattgc tgaaaaaggc
     7861 caatagtacg aaagtgcaag taaaccaata tcagtttgga gttgccgaaa acaagggcag
     7921 agtgcaaggt tcacttggct tgagtgcagg aaacggtaat caccgtttag gtttagaggc
     7981 atcagttgct tcaggtaaga aactgaaaca accatttaat gtattagtaa attatcgtta
     8041 tcaatggtaa tttaagaggg caggtgaaaa cctgccctta aattcaataa ttaatctatc
     8101 ttcccacaat ttaaacagta aagatacatc tgtttcggat cgttaaaacg tgaaagagtc
     8161 tctagctgtt gttgcggttg cttcaacagc ggtaaatcaa gccaatttgc cacgctaaat
     8221 tgtaattgag ctttgaaatc acgggcaagc gtgccaaata agctgtcatc ttgctccgca
     8281 aaccattgta agccgaactg ttcgacttta ggttggtttt ccgcttcacg tttttggttg
     8341 atcaattcag ataacgcatt atatgccaca ttaaaattgc ccaactcatc aaccaatccg
     8401 tgttttaacg catcagttcc cagccacact tgcccttgag ccactttatc taccacctct
     8461 tttggcattt tcctgccacg agaaaccagc tctaaaaaac ggtcgtagcc gttttcaatc
     8521 ccaatttgca gcacttctgc ctgctcttgc ggtaggcttt ttaaaccggc ttgttgtgct
     8581 agggcagaag tcgctatgcc gtcttcgctc acaccgagat ttttagcggt tttttcaaaa
     8641 gttactgcta aaccgaaaat accgatagag ccggtaagcg tattcgggct agcaataatt
     8701 ttatcgctgg tagccgcaat ccaataaccg cccgatgctg ccattccgcc cattgaagca
     8761 accaccggtt tgccggcttg ttgaaaggct tccacttctt ggcgaatcag ttcagacgcc
     8821 acagcactgc cgccggggct gttaatgcgt agaattaagc cttccacatt tttgtcatct
     8881 cgagcttgtt gcagtaattt taccagcgtc tcgctgccca cattcatttc gtcactttca
     8941 ccgccagcaa tcgccccttc cacattcact accgcaattt tcggagcatt cacttctgca
     9001 aagcggtcgt ttagttcagt catataatct aaaaattcaa tctggttata actgccttcg
     9061 ctgtttttgc caaactgtgc aatcagttta tcccgacttt cttggctgga cactaactga
     9121 ctaacccatt tttgatttaa tgccagttga gcatcatctc ctttagcttg tttatatttt
     9181 tcaatgtaat tggcaggcga taaatccagt gcttgcggtt caatgttgcg gttttgagct
     9241 agtgttgcca cagtttgttg ccaagtgccg tttaaccagc ctcgggcatt ttgtttcgcc
     9301 tcctcagaca tatcatcacg cataaacggc tcaaccgccg atttataagt accgacacgg
     9361 aaaatatgcg gttcagcctc aattttatcg agcaaggttt tgaaataagt gttggaataa
     9421 tttaagcctt ttaaatccac cgcaccgact ttattgagat aaatttcatc agcaaaggaa
     9481 gcaagataat attgtttttg cgagtagtct tcgcccactg caatcaccgg cttgcccgat
     9541 tgtttgaagt tgttgatttc attgccgata aaatccaatg agctgaaatc agcactttgt
     9601 agcttttgca gatctaacac caagccggta attttcgggt catttttagc gtggctaatc
     9661 gcttgcacca catcaaaagt cgagatttta aacggctcgg aactacctaa ttccgattgc
     9721 accaagcggt agaaatcagt gaattcttcc cgattatctg ctaaataacc atctaaattt
     9781 aaacgtaacg ccccttgatt gaacaccggc ttttgcgtgc tgccagaaga gctgataaat
     9841 gcgaccaccg gcactaatag caaaataaac agaataaaaa agagattaat gacacactct
     9901 ctaatacaac ggaagattcg gtaaaatgct tttaaaatcg ttaacatcgg aaattcctaa
     9961 aaataaactc agtcggcaca gtataaagca atcgctaaat gaagaaaata tgctattctt
    10021 gaacgcaaaa aattaacaaa ggaacgctta tgcaaatctt ggatttatta caccatcgcc
    10081 gttcaaataa aaaatttggc gataaagccc cgaatgcaga acaactggaa caaattctaa
    10141 aagccggctt gcgagtgccg gatcacgggc ggttaaagcc ttatcgcttt gtggtgattg
    10201 aaaaaagcgg tatgccacag tttggtgaat gcttaaagtc tgcggtagca gaatttgata
    10261 tgggcgagga acgcttaaaa aaagcggaaa aattagctaa tcaagctcca atgattatcg
    10321 gcgtggtagc aacattagac gacagcatcg ccaaagtgcc aagttgggaa caaatgatta
    10381 ccgcaggctg tgcaacttat gcgattcagt tagcggcaaa tgcacagggc tttgatacgg
    10441 tttggatcac caataaatgg attaacggct ctgctcttcg ctccgctttt ggttgccaag
    10501 aatctgataa aatcattgcc ttaattatgc ttggctcacc ggcagagggc gagcaaattg
    10561 cattagcccc tgaaagtgaa agtttagagg ggtttgtacg ttatcttaag taagcaggtt
    10621 aacagataaa agttagtaat aagggcgaaa aatatttcgc ccttgctttt atctgttttc
    10681 gccttacttc ttccagcctt ttaacgcatc ggcaaaggca ttgttaccaa aagcgttgcg
    10741 attgttgctt tgcaagcggt catttttctg cgtatttttg caaatttctg ctgaatttcg
    10801 accgcttgtt ggctcttttt tatcggttgg tttgtcgtct aaacgcatcg taagggcaat
    10861 acgtttgcgg gcagcgtcca cctcaagcac tttgactttc accacatcac cagctttcac
    10921 taccgtgtgc ggatcttcaa caaaagagtt tgagagcatt gaaatatgca ccaagccatc
    10981 ttggtgtacg ccaatatcga caaaagcccc aaagtttgcc acattggtca ctgtgccctc
    11041 caaaatcata ccggctttga ggtcggtaat ttcttccacg ccgtccataa acacggcggt
    11101 tttaaactct ccacgagggt cacgccccgg tttttctaac tctttgaaaa tatcgttcac
    11161 cgttggtaaa ccaaactgct catccacaaa atctttggcg ttgagcgagt gaattttgct
    11221 gttgttaccc attaattctg caagtgttga ggtagttgcc tgtaagattt tttctaccac
    11281 cgggtaagct tccgggtgaa cgcttgaggc atcaagggca tttttcccac cgataattcg
    11341 cataaaaccg gcacactgtt caaaggcttt cggccctaaa cgaggcactt ttttcagctc
    11401 tgagcggctg gtaaaacggc cgttttcgtc acggaatgcc acgatatttt gtgccaatgt
    11461 tttggtcatt cccgccaccc gagccagcaa cggagcggag gctgtattca gatccacgcc
    11521 cactgcgttt acacaatctt ctactaccgc atcgagttta cgggcaagtt gggattggtt
    11581 tacatcgtgt tgatactgcc caacaccaat cgcttttggt tcgattttca ccaactcggc
    11641 aagtggatct tgcaaacggc gggcaatcga aaccgctccc cgtaatgaaa cgtctaaatt
    11701 tggaaactcg ttagccgcaa attcagaggc agaatagacc gatgccccag cctcactcac
    11761 caccaccgtt tgcggtttat tctctttgat ttctttaatc accgctttgg caaaacgttc
    11821 ggtttcacga gaggccgtac cgttaccaat cgcaatcagt tccacattgt gttgtttgat
    11881 taagctgaaa atcgcaagct gtgcctccgc ctctcgccca gtgtgagggt aaattgtggc
    11941 ggtatccagc aatttaccgg tgttatccac caccgccact ttcacgccgg tacgcaagcc
    12001 cgggtctagc cccattgtat ttctcgcacc ggcaggggct gccattaata atgccgagag
    12061 attgcgggca aacacatcaa tcgcctcttc ttcagctttt tcacacaggg ttgccattaa
    12121 ttcggtttct aaatgcagag ctgctttgat tttccacgtc caagcaatca cttgctcacg
    12181 ccatttatct gctggttgat tattaaaaat cacgcccaaa tgctcacgaa taatttcttc
    12241 acaatggctg gattttgtgc cttcttctgc agtcggatcg gcatttaatg aaagtgataa
    12301 caccccttca tttcgcccac ggaacatcgc caaagcacgg tgggaaggca cgctgttaaa
    12361 cggctcgcta tgagcaaaat aatcacggaa tttctcgccc tcttcctctt tgccgtcaat
    12421 cactttcgat tccaacgtgg cgtaagcggt caaatattgg cgaagttttg caagtagctc
    12481 agcatcttcg ctaaaacgct ccattaaaat atatcttgcc ccgtctaatg cggccttggt
    12541 atccgcaacg cctttttccg catcaacaaa gtttgccgct aaggtttcag gatcttgttt
    12601 cggatcattc cataaactgt ccgccaatgg ctctaaccct gcttcaatcg caatttgccc
    12661 tctggtgcga cgttttggtt tatacggcaa atagagatct tccagctcgg tcttgctttc
    12721 actgcttaga attttggctt ttaattcatc ggttaatttg ccttgttctt caatcgactt
    12781 caaaatggtt tggcggcgtt cgtccatttc acgcaaataa attaagcggg tttcaaaatg
    12841 gcgaagttgg gtgtcgtcta gcccgccggt cacttcttta cggtaacgag caataaatgg
    12901 aatggtattg ccctcaccta atagcgtgat ggctgcaaga atttggtgtg agccaacgtt
    12961 gagttcgccg gcaataattt ggctgatttt tagatttaag tcagtcatta gttttccttc
    13021 aataaatttg ctcgaggttt atccaatttc tcaagctcgg tcaatgtttc ggcaattttt
    13081 tgcagattcg gctctttttt cgcacataac accatatttt ctaagctatc cgcttggtga
    13141 tagtagggtg ctttgctttt gacagcctgc tcaaattgct gataagcctg ttgaaattga
    13201 ccctgtttac ataaaaaagt gccgtaatta ttcagcacat cagggcggtt ttgactcaat
    13261 ttcagtgccg tttggtaggc tttttcggca ttttcagcat cacctgtttg ttggtaataa
    13321 taggcaagca ccgaataagg gaggtaatct ttttcatcgt gagccaaggc tttatcaata
    13381 ttctgcttag cttttgggaa atcattttgc tccagataag ctaaagccaa attaatacgg
    13441 gcttttaccg cttccgagcg gttaaattcg acttcagagg aagaaggggg aagagaagaa
    13501 caagccgcta ataaaaaaat cagaatacaa gcggtcattt ttggaaaaaa ttttgcaaac
    13561 ataacgttct cctacaacaa agggcttaat tttactgttc catcctcgct aagactagcg
    13621 attttttgcg aagaagaaaa atttttcgtt ttcatttttc gacgcagatc gcaaaaataa
    13681 taatggggtg ttgtgctagg gtaaatggta ggaatacact ctctatttaa tataagaatt
    13741 tcattgaaaa aacttataaa acttataaaa tagaggcaaa aatgaaaata gtggtattcc
    13801 agcgtaaagc cttaaagcaa ttacgaaaaa tcccaactgg tgcagaaatt cgccgaaaat
    13861 gtgatgattt agcttacttt ccctactgtg ccaatattaa ggcattaaca aatcatcaat
    13921 atgattatcg ctttcgggtc ggaaattacc gtattttttt caatattgaa ggcgaaacga
    13981 tgaatattgt gtctatcgaa gaggttaaaa aacgagatga aagaacttac taatattcaa
    14041 tatttaaata atgaagaagg aaaacctgcc tttgccgtac ttccgatagc aacacttgaa
    14101 tggcttaagc agaaagcaaa tattaaaacc gcaatagaga ccggtattcc atctgctgtt
    14161 gctggaattg cattagataa taactactca gctctgcgtg cttggcggga atatttaggt
    14221 ttaactcaag aagaggtggc acaacgcttg gggatttcgc aatcagctta tagccaacac
    14281 gaaaatgcaa aaaatctacg aaaaacgacc cgcataaaaa ttgcctatgc gttgggttta
    14341 aatgaagagc aattagattt ctaataacaa aaaggcagga acctctgcct tttcactatt
    14401 cagattaatg ggttttaacc gcaatacctt gcccgaattt acgtttttca agggtgcgtt
    14461 tggtgcggtc aatcacatcg ccagcaagct gtccgcaagc ggcatcaata tcatcacctc
    14521 gtgttttacg cactgttacc gtgaaaccgt actccatcaa ggttttttgg aaacgatcta
    14581 cccgagagtt agagctttta ccataaggag cttctgggaa cgggttccac ggaatcaagt
    14641 taattttaca cggcgtgttt tttaatactt cagcaagttg gtgggcgtgg tttgtgctgt
    14701 cattgacatg atctaacatc acatattcaa tcgtgacctt gccgtggttg gcgttagaaa
    14761 cttcacggta tttattcacc gaatccatca acattttgat gttgtacttt ttattaatcg
    14821 gcactaattc atcacgcagt tcatcgttcg gagcgtgaag tgaaattgcc aacgccacat
    14881 caatttgctc acgcattttg tctaatgccg gcaccacacc cgaagtggaa agcgtgacac
    14941 gacgtttaga taagccgtaa gcaaaatcat ctaacatgat ttccattgcc ggaatcacgt
    15001 tattcatatt cagcaatggt tcacccattc ccatcatgac cacattggta atcgggcgaa
    15061 caccggtcac gccaaaattg ccgataattt tagaagcacg ccacacttgc ccgataattt
    15121 ccgccacgct taagttacgg ttaaagcctt gttgagcggt tgagcagaag gtacaagcca
    15181 aggcacagcc tacttgtgaa gaaacacaca gggttgcacg gtcatcttca ggaatatata
    15241 ccgtctcgat ttgctgatcg cccacttgca ttgcccattt aatcgtaccg tctgcagaac
    15301 gttgttctac cgccacttca ggggctttaa tttcggcaat acgctttaat ttttcacgca
    15361 atactttatt gatattgctc atattatcga aattttcttc gccaaaatgg tagatccatt
    15421 tcattagctg gtcggcacgg aaaggttttt cccccatttc tgcaaacagt tctcgcattt
    15481 cttgacgatt aagatttaat aaattgattt tttcttttgg ttgttcagca gacccacagc
    15541 ctgcattggt aatcagttct gacataaagt tgaaagcctc gttattacac ggattacggc
    15601 aaaaggttag ggcaaatgcc cttattttgc gattggattt taaagcgtgc aattttactg
    15661 gctcttgagg gattaggcta gtaattttta atcaaaagag ttgaattgcc tgagtaaact
    15721 tatcaagaat aaccttataa aaacaagact atttacatca ttcccaatgt tctatagaat
    15781 agctttcgat aattctcatt ctcaataaca aaaggaggct aaaaatgaaa ctatcaacaa
    15841 ttaaaaaagc attggtatta acctttggtt taagtgcagc gatggcaatg gcagagccgt
    15901 ttaaagtagt taccactttt accgtgattc aagatattgc acaaaatgtc gccggcgata
    15961 aagccactgt ggaatccatt actaaaccgg gtgctgaaat tcacgattat caaccaacac
    16021 caaaagacat tgtaaaagct caaaaggcag acttagtgtt atggaacggt atgaaccttg
    16081 agcgttggtt tgaacgtttc tttgaaaatg taaaaggtaa accggcggtt gtcgtcaccg
    16141 aaggcatcac cccaatgccg attaccgaag gtgaatataa aaatctacca aatccgcacg
    16201 cttggatgtc caccgataac gcattaattt acattgaaaa tattcgtgcg gctttagtaa
    16261 aatatgaccc acaaaacgca gacacctata atgccaatgc aaaagcctat gctgaaaaag
    16321 taaaaggtat tgctgagcca ctccgccaac gtttagcttt tattcctgag cagcaacgtt
    16381 ggttagtaac cagtgaaggg gcatttagct atttagcgaa agactacaac ttaaaagaac
    16441 tttatttatg ggcaatcaat gcggaagagc aaggttcgcc aaaacaagtg aaaaaagtga
    16501 ttgatggtgt aaaagccaac aaaatccctg ttgtgtttag cgaaagtacc gtttccgaca
    16561 aaccggcaaa acaagtggcg aaagaaaccg gtgcattata cggtggcgta atttatgtgg
    16621 attcactttc agagaaagat ggtccggttc caacctattt agatttgctt aaagtgacta
    16681 tcggcaccat tgtcgaaggg ttcgaacgaa gcaaaaaata ataagattta gcaatgacaa
    16741 ctgtttcagc ctccatttcc gtcgaaaatt tatcggtccg ttataataac ggacatatcg
    16801 ctttgcaaga tgtctcgttt catctggaaa acggcacaat ttgtgcatta atcggcgtga
    16861 atggaggtgg aaaatccact ctgtttaaaa gtttaatggg gctggttaag ccattaaccg
    16921 gctctgttaa gctgagtcag ctcccgattg ctaaagccct caaacaaaat ttggtttcct
    16981 atgtgccaca aagtgaagaa gtggactggc aatttccagt ttcggtttac gatgtggtaa
    17041 tgatggggcg atacggctat atgaattttc tacgccgccc aagccaaacc gataagctca
    17101 aagtagagca agcaatgcaa cgccttgatg ttttacatct caaagacagg caaatcggcg
    17161 aactttccgg cgggcaaaaa aaacgggtat ttttagcccg tgccttagct caagaaagta
    17221 aaatcatctt acttgatgag cctttcaccg gtgtggatgt taaaaccgaa aatgcgattg
    17281 ttgagctact taaacagctt aaaaatgagg ggcatttgat tttagtttcc acccacaacc
    17341 ttgccagcgt accaagcttt tgcgatcagg ttttgatggt caatcgcacg ctactggcaa
    17401 aaggtaaaac ggaagaaatc tttaataatc aaaatttaga acgggtgttc ggcggtttat
    17461 tgcattatca aaagtagtgt ttcagcaaca aatcacaaac aaatagggag gcaaatgcct
    17521 ccctattttt gtatcaatga atcttagaat atgcaaaact gaggaaaaaa atggccgctt
    17581 gcacgagaat aatcgtcggc cctgttgcgg catcaatatg gtagctaagc aacgtgccga
    17641 ataccgatga aaatatcgca acgcctaagg caatcagtaa catactatca aaccgcttag
    17701 tcagcaggta agcagtgatc cccggggtaa tcaacattgc caccactaaa atcacgccca
    17761 ccacttgcat tgcactgata atagttaaag caagcaagga aagtaaacca taatgcaata
    17821 atctaaccgg taagcctgct actttggctt gattaacatc aaagcaatag agcaagaagt
    17881 ctttgcgttt cgccaccatc accacaaagg taaagaggct tatgagtaaa gtctgaagca
    17941 aatcgctttt ggttacgcct aatagattac caaataaaat atgggttaaa tgctcaccgg
    18001 tattaaaggc ggtaaacagc aagatcccaa aggcaaacat acctgaaaac acaatcccca
    18061 ttaccgtgtc ttctttcaag cgactatttt cttttaaata gcccaccgat aaggcacagc
    18121 ctaatcctga aaaaaacgcc cctattgaga gtggtaaccc ggcaagtgag gaaatcacca
    18181 caccgggcag aacagcgtgc gaaattgcat cgcccattaa agaccagcct ttcagcacca
    18241 gatagcaaga taaaaccgca ctcacgccag caactaaaat tgcggtaatt aacgcaattt
    18301 gcataaattc aaattgcaac ggctctaaaa tccaattaag cattttgaac ctccacacgg
    18361 tgcaatttcc gcttttgagt aatcaagcca tatttaggag caaagcagaa tgcgaataag
    18421 aaaattaagg tttgtaagca cacaattacc gcaccggttg caccgtctaa aaagtagctt
    18481 aaatatgccc caatccctga tgtcagcgtg ccgataagca ttgcgatcag cactaatcta
    18541 gggaaacggt cggtaagtaa ataagcagtt gctcccggcg tgacgaccat cgcaataacc
    18601 aaaattgccc caaccgtttg cagagccact actacacagg cacttaataa ggtaaagaaa
    18661 atcactttat agcgtaatgg cgaaagcccg actgacaatg cgtggtgttc gtcaaaaaag
    18721 acgagtagca aatccttcca aaataggatt aaacccagta acgaaatcgc aataatcagt
    18781 accacctgcc acaagtcatc atcagcaatg cctaaaatat ttcccattac aatcgaatta
    18841 acatcaaccg atgttggatt gagggaaaca ataaacatac caagcgcaaa aaaagtcgtg
    18901 aaaataaagc cgataaccgc atcttcttta attttcgtca ggctttttac ccaaagaatc
    18961 gataatgccg ccaaaatccc ggaaaaaaac gcaccaaagg cgtagggcaa ttttagtgca
    19021 taagcgatgg caacacctgg cactacagcg tgtgataagg catcaccaat caaagaccag
    19081 ccttttaaca tcaaaaaggc ggaaagaaaa gcacaaacta accccacgcc catactgaca
    19141 aaaatcgctt tttgcatata gttgtaggta aaaggctcta ataaaagatc aagcataaaa
    19201 tcctaacaag ttgttgataa t
//
LOCUS       DANMBQ010000034        19015 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.034, whole genome shotgun sequence.
ACCESSION   DANMBQ010000034 DANMBQ010000000
VERSION     DANMBQ010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19015)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19015)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19015
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.034"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            32..244
                     /locus_tag="PXE92_001049"
     CDS             32..244
                     /locus_tag="PXE92_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HDL5760313.1"
                     /translation="MSAITGTVKWFNATKGFGFITPDQGGKDVFVHFSAIEANGGYRT
                     LEDGAKVQFEIQDSERGASAVNVKTI"
     gene            complement(304..1458)
                     /locus_tag="PXE92_001050"
     CDS             complement(304..1458)
                     /locus_tag="PXE92_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HDL5760314.1"
                     /translation="MMKVSPFQWAAFNYFGFFCAYGVLLPFLPVWLKHHGYSTEMIGL
                     FAAVGYLFRFAGSMLASQRVKTVSQLIPTARSLTWLNIAAAAALLFSGDFIWLLFPVL
                     MLFQMFNSGAMPIADSIASIWQHQIGLDYGRARLFGSMAFVVGSLSAGYLIGLLGENS
                     VVWIIIGFLVFLGIGQLATPKVGFEEQGNKANTSSVTYRQLLKEPETLKMLIAVSLIS
                     ASHAAYYTYSTIHWSNASISTAMTSLFWGLAVVAEILFFLVSKRLFKSWKISHLMILA
                     AVFAVIRWAIMGSTTEIVLIIVMQMLHSITFGAAHIAMIRYISMQSAERVTKLQGLYF
                     GLASCAFMAVFTFIAGMVYQHSPSLTFWLMAIFTLPAIFIVPKRFEVQIN"
     gene            complement(1455..2273)
                     /locus_tag="PXE92_001051"
     CDS             complement(1455..2273)
                     /locus_tag="PXE92_001051"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDL5760315.1"
                     /translation="MNEKKLAFIGTGNMAYAIIQGLLKSGYSAEQIIACNKSNLARRE
                     ELQAVGIATNFANREAVEQADVIVLAVKPQMMAQVCAEFADVDFSNKWVISVAAGISV
                     QRLETLLPSAKNIIRTMPNTPSLISEGMTGLFAKKSVNPTACQFAEQLMSAVGKCYWV
                     ETEEQINHIIAITGSSPAYFFRFMEAMQQSAVQMGFSEQDARTLVQSVALGAAKLVEA
                     NPTTPLSTLRENVTSKGGTTAKALEVFEQHDLAKTVDDAMWAAIHRAREMEQSL"
     gene            2350..3258
                     /gene="rdgC"
                     /locus_tag="PXE92_001052"
     CDS             2350..3258
                     /gene="rdgC"
                     /locus_tag="PXE92_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HDL5760316.1"
                     /translation="MVWFKNVMIYKLTGELALESNSLNELQQETRFTPCSQHDMSKFG
                     WATPLTGSDLLHFSQANQFLLISHKEDKLLPANVVKAETEQRIAELEEKEARKLKKTE
                     KQAVKDQVVSALLPRAFSKHQFTALWLDLDNQLVYVDAASSKRAEDTLALLRKTLGSL
                     PVVPISFTLPPAEVMTNWIAKGHTPSWLNLLEEAELKSFDTDSIIRCKRQDLETEEIA
                     RHLQAGKFITKLAIEWEGHFNCVLNEDATLSRLKFADEVREKNDDILKEDVAQRFDAD
                     FLLMTEELKLFTEKMIAEFGGIKSRI"
     gene            3279..3884
                     /locus_tag="PXE92_001053"
     CDS             3279..3884
                     /locus_tag="PXE92_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase family hydrolase"
                     /protein_id="HDL5760317.1"
                     /translation="MLDQTIIDQYDALIFDMDGTLIDTMPSHAKAWEKVGEVLGYPIN
                     PKPMYELSGSTTFVIAREIMQRSNIPEHYFEQVVQLKREFGIEMVLANATLLPAFEII
                     KANVGKKPMAIGTGSHRAMVELLDQKFNLRQYVSVIVDSDDVSNHKPAPETFLKCAEK
                     LGIAPHRCLVFEDADLGVQAALNGNMNVFDVRTNTITHSTR"
     gene            3900..4691
                     /locus_tag="PXE92_001054"
     CDS             3900..4691
                     /locus_tag="PXE92_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HDL5760318.1"
                     /translation="MKTEWIKHLIQQLTTLSKAIENYFTSGSFGVKFYPFLMHPCFRK
                     SCAFLIFIIAMVSSFSGLFYLVAEHITILFSERSLTTYFHHSTLELMIPVGTMIDEKI
                     SELSPLSVVMRSMFVLQAVVFFFIYAIGITHIAHNKLRVIGLLLSLCFAIGCSLVAGI
                     QPSSRGEFGIYNLGASITFLIGNLTLIIAGFDLYHPSMQFFKRFSIGAGVIGAICILI
                     TIFLPTLFSPLIERAGIYTIMLWEILAGFAIIKRLLKLPSFRQQG"
     gene            4695..5837
                     /gene="argE"
                     /locus_tag="PXE92_001055"
     CDS             4695..5837
                     /gene="argE"
                     /locus_tag="PXE92_001055"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HDL5760319.1"
                     /translation="MKQIPFIQRYAQLIELPTISSLVAEEDLSNRRLIELLATWLADF
                     GFKTEILAVEGSRNKYNLLATYGEGEGGLLLAGHTDTVPFDEGKWRFNPFQLTEKAGK
                     LYGLGTADMKGFFAFVVEVVSQLDLTQIKKPIRILATADEETTMLGARTFAQHSHIRP
                     DCAIIGEPTSLKPIRAHKGHIGESVRITGRSGHSSDPAKGINAIELMHQSIGYLMKMR
                     DELREKYHNPLFQVTHPTMNFGNIHGGDAINRICACCELQFDMRPLPNMAVQDLYAMV
                     NEHLKPMLEQYGDLIEIRHLHDGIPGYECEHSAQIVQVVEKLLGEKCDAVNYCTEAPF
                     IQQLCPTLVLGPGSIEQAHQPDEFLEMKYIEPTKELLTKLIYHFCG"
     gene            complement(5984..6271)
                     /locus_tag="PXE92_001056"
     CDS             complement(5984..6271)
                     /locus_tag="PXE92_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5760320.1"
                     /translation="MPKSWELSLTARSNVIEILQSVEDYTGHWLSAVSLWEQLQNKLD
                     LIAFMPTIGRRREDGTLETFCRNYRIVYEIHLEKVYIITIIHSRRLYPRPS"
     gene            complement(6264..6455)
                     /locus_tag="PXE92_001057"
     CDS             complement(6264..6455)
                     /locus_tag="PXE92_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760321.1"
                     /translation="MLFKEQGYDEFLAEQIKAGQEAIARGETFTKEQINNELNHLFAD
                     MQKRQQLRENENLFEVNYA"
     gene            complement(6745..7335)
                     /gene="yraP"
                     /locus_tag="PXE92_001058"
     CDS             complement(6745..7335)
                     /gene="yraP"
                     /locus_tag="PXE92_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HDL5760322.1"
                     /translation="MNKLANKLLKGSLLVLGFISLQGCITTAVVTSAAVATKVATDPR
                     TTGTQVDDEILEEKVAYNINKDEQIKQEARINVVAYNGKVLLIGQAPSMDVVENAKNL
                     AAGAEGVTEIYNEIRQGEKIGFGQITQDSWITTQVKSKLLVNSEVKATEVKVVTENGE
                     VFLMGKVSQNQADAAAEAARNVGGVTKVVKVFSYAQ"
     gene            complement(7345..7929)
                     /locus_tag="PXE92_001059"
     CDS             complement(7345..7929)
                     /locus_tag="PXE92_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HDL5760323.1"
                     /translation="MLNKIQDRFTESIQTQISASELLPAKLSEAANRIVACLLRGDKV
                     IVCGHGRSYGNAELLVSHLLHRYELARPSFAAVQLQLSGVLAGVVAQDNELEAVYKKQ
                     LQAVAKEGDLFIVFSPVGNEECILQAIHTAKNQHLDLDIIALTGSNNDHTLGLLDESD
                     IEISAPSTNQLRVIESHHFYVNLLCELIDHLLFS"
     gene            complement(7935..8306)
                     /locus_tag="PXE92_001060"
     CDS             complement(7935..8306)
                     /locus_tag="PXE92_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HDL5760324.1"
                     /translation="MELFNKLINKREQGSFYEQKARVFLEQQGLRFVAANQAFKGGEL
                     DPIMQDGQTVVFVEVRQRKSNRFGSAVESIDYRKQQKWQNAANMWLLKQNQSLETANC
                     RFDVVAFEGNQTPVWIPNFLG"
     gene            complement(8281..10002)
                     /locus_tag="PXE92_001061"
     CDS             complement(8281..10002)
                     /locus_tag="PXE92_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HDL5760325.1"
                     /translation="MATILNHTMKKALVPTAIALFISACTSVNPVTESIKNEAYSSSE
                     FYINKADQTKEAEDKISYQLLAVRKLIDENKEYEAQNTFSEILTAEMNEVQKLEYALV
                     SAQLAALQGKNEQATSQLKAIQDPLLSSAQRLRYIQTQARIAANQKDVIGIVRARSQL
                     NNFYKMNRERQENNDIIWQTLRDANRGMLEKTVPEAGEMELAGWLALINIYNQNVTTP
                     AQMPQAINNWKAQYPSHSAVAVMPTELQGVSNFQQTQLNSVALLLPLSGDAKILGDII
                     KRGFNDAKADDSTAVQTFDTDSSDVNSLISQAKQQGANVIVGPLLKSRVDEMLLSPEI
                     QNVNILALNATENVRNIAQVCYYGLSPESEAQSGAEKIYQDGNSVAIVAAPQDDYGNR
                     SAEAFAKRWRQLTNSDADVRYYNQPLDAVAAIQNAGVSKAALYILGNAEQVLEIKQGI
                     DSSTLKDRLAIYTSSRSNSPNNGIDFYTSMEGVKFSEVPLLADQSSSEYKKAENLANS
                     DFSMMRLYAMGADAWSLATKFNEFRHIPGYKISGLTGELKAGQHCNIERSLSWMQYRN
                     GAIQQAY"
     gene            10076..10948
                     /gene="rsmI"
                     /locus_tag="PXE92_001062"
     CDS             10076..10948
                     /gene="rsmI"
                     /locus_tag="PXE92_001062"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDL5760326.1"
                     /translation="MKNRQNSSGINPNYGILYIVATPIGNLGDITQRALDTLSSVDLV
                     AAEDTRHSGLLLSHYGIKKPFFALHDHNEQQKAVVLVEKLAKGENIALISDAGTPLIS
                     DPGFHLVRHCRQAGVKVVPIPGACAAVTALCASGIASDRFCFEGFLPAKTKSRCDKLT
                     ELENEPRTLIFYESTHRILDTLADMQTVFGEDRYVVMAREITKTWETIYGDQLGNLIE
                     WLNEDSNRIKGEIVLVVEGKPQSSEEAFSSQAIKLLTLLCQELPLKKAAAIVAETFGY
                     KKNALYQYGLEHFE"
     gene            complement(11193..12359)
                     /locus_tag="PXE92_001063"
     CDS             complement(11193..12359)
                     /locus_tag="PXE92_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5760327.1"
                     /translation="MTNLLLAIIYLSFISLGLPDAILGSAWPSMHQQLAVPLSYAGVV
                     SMIMSIGTITSSLMSDKLTYHLGTGKVMVISVALTALALWGFSISDAFWILCLWAIPY
                     GLGAGAVDAALNNYVAVHYASRHMSWLHCMWGVGASIGPHILGYALLQGRGWEAGYFT
                     ISMLQIGLTLMLFCSLPFWKLRKQITAEINHSAKPMSLKETLKIPGVKYGILAFFGYC
                     GVEQTAGLWASSYFVMVKDVGLEQAAAFGSIFFIGITVGRGVSGFLTLKFSNRQMIKL
                     GSALILVGIAILCLPLGKYVTLASLIIIGLGCAPIFPCLIHSTPAFFGEDKSQSVIGV
                     QMASAYIGVLLLPPIFGFIANAISIQLLPLYLLLMFAIMAYAYRNLVRETSPSP"
     gene            complement(12511..14025)
                     /gene="putP"
                     /locus_tag="PXE92_001064"
     CDS             complement(12511..14025)
                     /gene="putP"
                     /locus_tag="PXE92_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDL5760328.1"
                     /translation="MFGLDPTTIMFVVYILGMIAIGFIAYRVTNNLSDYILGGRRLGS
                     FVTALSAGASDMSGWLLMGLPGAVYAGGLIEGWIAIGLTIGAYLNWKLVAGRLRSHTE
                     HSGDALTLPEYFHNRFGDKTRLIKILSAVIFLLFFAIYCASGVVAGARVFENLFGLPY
                     HQAIWYGAVATILYTFIGGFLAVSWTDTIQASLMVFALILTPFFVMYNLGGFDEMQAL
                     IDRAGEMAQKDYNDIFTGTSVLGIISLMAWGLGYFGQPHIVVRFMAAESVKSLENARR
                     ISMTWMIICLLGAIGIGYFGMAYFFGNPEQVGNISKNPEQIFIELAKLLFNPWVAGIL
                     LSAILAAVMSTLSAQLLICSSAITEDLYKGILRPQASDKELVWLSRLMVLAVAALAIY
                     IAQDPDSKVFGLVRNAWAGFGSAFGPVVLLSLFWKRMNGFGAIAGMLTGALIVHFWGD
                     ITLKLALPEIYSMIPGFIAATLMIIVVSLITPMPSKAVLDTFDRANKAYLAEVK"
     gene            complement(14119..14907)
                     /locus_tag="PXE92_001065"
     CDS             complement(14119..14907)
                     /locus_tag="PXE92_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HDL5760329.1"
                     /translation="MNAKKEKESSGNQSLIRGLTLLELLAKFPNGCPLAHLAELSGLN
                     KSTVHRLLQGLQQEGYVRPAPTAGSYRLTTKCLAIGQRALSSINILHIAAPHLEALNL
                     TLGETVNFAMRENDHAILINKLEATTGMMRTRAYIGQQMQLYCSGMGKLFLAYGSADY
                     IPQYWQTKSDIIQKLTVNTITTIDGMQTELETIRRQGFAMDNEENELGVSCIACPIFD
                     HQQKVHYAISVSLSTARLNQLGRENLLPAIQETAEKISAELGGR"
     gene            complement(14904..15482)
                     /locus_tag="PXE92_001066"
     CDS             complement(14904..15482)
                     /locus_tag="PXE92_001066"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDL5760330.1"
                     /translation="MNQSSLTDLRSQLRQSMRLKRQSLTAGQQTQAAESIIPQALSLI
                     ESYQVSHIAFYLPFNGEISPIPLMEQLLQQGKKLYLPLLHPFTSGQLLFVNYNCKTIL
                     KFNRLGIQEPILDVRNILPLQELEMIFTPLVACDKAGNRLGMGGGFYDRTLAQAPHLI
                     SVGLAHECQQVEQLPIESWDMPLDHIILGAAK"
     gene            complement(15484..15675)
                     /gene="ssrS"
                     /locus_tag="PXE92_001067"
     ncRNA           complement(15484..15675)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="PXE92_001067"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(15780..16070)
                     /locus_tag="PXE92_001068"
     CDS             complement(15780..16070)
                     /locus_tag="PXE92_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HDL5760331.1"
                     /translation="MSANNIELQIFGQVLRLQCPVEQQEHLLASAQRLEERVVVLKEQ
                     SGIIQLEKVLAIVALNLNYELEQAQRQNAENKNVLVACIEQLDNSLGKFQSN"
     gene            16149..16706
                     /locus_tag="PXE92_001069"
     CDS             16149..16706
                     /locus_tag="PXE92_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HDL5760332.1"
                     /translation="MAITDSQQFKQLVSQLQIDDTPAEFHGFLCGLIAGGIQDESWKT
                     LTYQFTNDGHAFSIEPLNTLTDFYQQLSESFSEANTLFSLWLPQNEEDGFALADGISE
                     WTNSFLLGLGVAQPKLQQETDEVGEAIDDLDEIAKLGYSDDDNNEELLEAGEEVLEYL
                     RVLALFLHSHFALGVPKTEEKPPLH"
     gene            16804..17868
                     /gene="hemE"
                     /locus_tag="PXE92_001070"
     CDS             16804..17868
                     /gene="hemE"
                     /locus_tag="PXE92_001070"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDL5760333.1"
                     /translation="MSELKNDRYLKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAG
                     DFMSLCRNADLACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLSFGAGEGPKFARP
                     VASLNDVNQLPIPDPEDELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTKIKKMLYAEPHILHKLLDKLADSVILYLNAQIKAGAQAVMVFDTWGGVLAHED
                     YKAFSLHYMHKIVDGLIRENEGRKVPVTLFTKGGGLWLEAIAETGCDAVGLDWTVDIA
                     DARRRIGDKVALQGNMDPSVLYASPERIEQEVKNILAGFGNGSGHVFNLGHGIHLDVP
                     VESPKVFVDAIHNYSKQYHK"
     gene            18015..18605
                     /locus_tag="PXE92_001071"
     CDS             18015..18605
                     /locus_tag="PXE92_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF416 family protein"
                     /protein_id="HDL5760334.1"
                     /translation="MRNPIHKRMERFEPWQNTTFMACLCERMYPNYQLFCEVTEQPEK
                     AKVFQNILNLVWEYLTIKGAKINFDNQLEKLEEIIPDVNEYAFFGVLPAQEACEALSE
                     LLHSIIAGSTLEQAIRISQISLGTVASYLEMQQDKELNEQELKNSEEIQEELDVQWQI
                     YRLLNECEKRDLDLIFELKDEIRSSGISNIGLNINQ"
     gene            18741..19013
                     /locus_tag="PXE92_001072"
     CDS             18741..19013
                     /locus_tag="PXE92_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005819506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDL5760335.1"
                     /translation="MNKTELIDAIAAGANLTKKDAKAALEATLDAISASLKAGDAVQL
                     IGFGTFKVNERKARTGRNPKTGEEIKIAAAKVPAFVSGKALKDLVK"
BASE COUNT         5635 a         4227 c         3908 g         5245 t
ORIGIN      
        1 tcactttttg tatttatata aggaaaattt tatgtcagca attaccggca cagtaaaatg
       61 gttcaacgcc accaaaggtt ttggttttat cacccctgat caaggtggca aagatgtatt
      121 cgtacacttc tctgctatcg aagcaaacgg cggctaccgc acattagaag acggtgctaa
      181 agtacaattt gaaatccaag attcagagcg tggagcttca gccgtaaacg tgaaaacaat
      241 ctaatttcag caaattcaat gaatttcgat aaaaatgccg acaacttgtc ggcatttttg
      301 ctatcaatta atctgtactt caaacctttt cggcacaata aaaatggcag gtagggtaaa
      361 aattgccatc aaccaaaatg tcaggcttgg ggaatgttga tagaccattc cggcaataaa
      421 ggtaaatact gccataaaag cacagcttgc caagccaaaa tagagacctt gtaatttcgt
      481 cacacgctct gccgattgca tcgaaatata gcgaatcatc gcaatatgag ccgccccgaa
      541 ggtaatagaa tgtagcattt gcattacaat aatcagcacg atctctgtag tactacccat
      601 tattgcccaa cgaatcactg caaaaacggc agctaaaatc attaaatggc tgattttcca
      661 cgatttaaac aagcgtttag agaccaaaaa gaacaaaatt tccgccacca ccgccaagcc
      721 ccaaaacagg ctagtcattg cggttgaaat actggcattt gaccaatgaa tggtgctgta
      781 agtgtaataa gcggcgtgcg aggctgaaat taacgacacc gcgatcaaca tttttaaggt
      841 ttccggctct ttcaataatt ggcgataagt tacgcttgaa gtattggctt tattaccttg
      901 ttcttcaaac ccgactttgg gcgtagcaag ctgccctatt cctaaaaaaa ccaagaaacc
      961 gatgataatc cacaccaccg aattttcacc aagcaagccg ataagatagc cggcagaaag
     1021 tgagcctacc acaaacgcca ttgagccgaa taaccttgct ctgccgtaat ccagcccgat
     1081 ctgatgttgc caaattgagg caatgctatc ggctatcggc attgcccccg aattgaacat
     1141 ttgaaacaac attaacaccg gaaaaagtag ccaaatgaaa tcccctgaaa acagcaacgc
     1201 cgccgcagcc gcaatattca gccaagttaa actgcgggcg gtgggaatga gttggctcac
     1261 ggtttttacc cgttgtgagg caagcatact gccggcaaag cggaacaaat agccaacggc
     1321 ggcaaataag ccgatcattt cagtcgaata gccgtgatgt ttaagccaca ctggcaaaaa
     1381 cggcaacaac acgccatagg cacaaaaaaa gccaaagtaa ttaaatgccg cccattggaa
     1441 cggggaaact ttcatcataa cgattgctcc atttctctgg ctcgatgaat tgccgcccac
     1501 attgcatcat caacggtttt agcaagatcg tgctgctcaa acacctcaag ggctttcgcc
     1561 gttgtgcctc cctttgaggt cacattttcc cgcaaggtcg aaagtggcgt agtcgggttc
     1621 gcttccacca atttcgccgc ccccaatgcg acagattgta caagcgttct tgcgtcctgc
     1681 tcggaaaagc ccatttgcac cgcactttgc tgcattgcct ccataaaacg gaagaaatac
     1741 gccgggcttg agccggttat cgcaataatg tggttgattt gctcctcggt ttccacccag
     1801 taacatttac caacggctga catcaactgt tcggcaaatt ggcaagcggt cggatttacc
     1861 gatttttttg caaataatcc ggtcattcct tcgctgatta aagacggggt gtttggcatc
     1921 gtgcgaatga tatttttcgc actcggcaac agcgtttcca agcgttgcac agaaatacct
     1981 gctgctactg aaatcaccca tttgttggaa aaatcaacat cggcaaactc ggcacacact
     2041 tgtgccatca tctgtggttt taccgccagc acgatcacgt cagcctgctc taccgcctca
     2101 cgatttgcaa aatttgtcgc aattccgacc gcttgtaact cctctcggcg agccaaatta
     2161 cttttattgc acgcaatgat ttgttcggca gaataaccgc tttttaataa gccttgaata
     2221 atcgcatacg ccatatttcc ggtgccgata aaggcaagtt ttttctcgtt cattcgcaaa
     2281 ttctctactg tgttgggttg aggtctgtta aaataacact attctacacc cgataaagga
     2341 tatgcaaaaa tggtttggtt caaaaatgtg atgatctata aattaaccgg cgagctggcg
     2401 ttggaaagca atagccttaa cgagttacag caagaaaccc gctttacccc ttgcagccag
     2461 cacgatatga gcaaattcgg ctgggctacg ccacttaccg gctcggattt actgcatttc
     2521 tcacaagcga accaattttt gctgatttca cacaaagaag ataaattatt acctgccaat
     2581 gtggtgaaag ccgaaaccga gcaacgcatt gcagaactgg aagaaaaaga ggctcgtaag
     2641 ctgaaaaaaa ccgaaaaaca agccgtgaaa gatcaggtcg tttctgcgtt attgcctcga
     2701 gcattcagca aacatcaatt caccgctctt tggttggatt tagataatca gttggtttat
     2761 gtggatgcag cctcgagcaa acgggcggaa gatacgctgg cgttactgcg aaaaacactt
     2821 ggctcgttgc cggttgtgcc gatttccttt accctaccgc cggcagaggt aatgacgaat
     2881 tggatcgcca aagggcatac gccaagttgg ttgaatttgt tggaagaggc agaactgaaa
     2941 tctttcgata ccgacagcat tattcgctgt aaacgccaag atttagagac ggaagaaatc
     3001 gcccggcact tgcaagcggg caaatttatc acaaaacttg cgattgaatg ggaagggcat
     3061 ttcaattgcg tgttaaatga agacgccacg ctttcacgcc tgaagtttgc cgatgaagtg
     3121 cgagagaaaa atgacgatat tctcaaagaa gatgtggctc aacgctttga tgccgatttc
     3181 ttattaatga ccgaagagct gaaacttttc accgaaaaaa tgattgccga atttggcgga
     3241 attaaatcca gaatttagaa aaaaatttaa ggaaagcaat gttagatcaa accattatcg
     3301 accaatatga cgccttgatt tttgatatgg acggcacatt aattgacacg atgccaagcc
     3361 acgccaaggc gtgggaaaag gtgggcgaag tgttaggcta cccaatcaat ccaaagccaa
     3421 tgtacgaact gagtggctca accacttttg tgattgcccg agaaataatg caacgctcca
     3481 atatccccga gcattatttt gagcaagtgg tacaactaaa acgggaattt gggattgaaa
     3541 tggtgttagc caatgccact ctgttgcctg cctttgagat tattaaagct aacgttggca
     3601 aaaaaccaat ggcaatcggc acaggctcac accgtgcaat ggtggaatta ttagaccaaa
     3661 aatttaactt acgtcaatat gtttcggtta ttgtagattc tgatgatgta agcaaccata
     3721 agccagcccc tgaaaccttt ttaaaatgtg cggaaaaact tggcattgcc ccacaccgct
     3781 gtttggtgtt tgaagatgcc gatttaggcg tgcaagccgc cctcaacggc aatatgaacg
     3841 tgtttgatgt acgtacgaat acgataactc actcaacccg ttaaaaatga taggtttata
     3901 tgaaaacaga atggattaaa catttaattc aacaattaac cacgctttcc aaagccatcg
     3961 aaaactactt taccagcggt tcatttgggg tgaaattcta cccttttcta atgcaccctt
     4021 gttttcgtaa aagctgtgcc tttttgattt ttattattgc tatggtttca agttttagcg
     4081 ggctatttta tttggtggcg gaacacatca cgattttatt tagcgaaaga tcgctcacca
     4141 cttacttcca ccatagcacc cttgaattga tgattccagt cggcacaatg atagatgaaa
     4201 aaatcagcga attatcacca ctttcggtgg taatgcgttc aatgtttgtg ctacaagcag
     4261 tcgttttttt ctttatttat gcaatcggca tcacccacat tgctcacaac aaattgcggg
     4321 tcatcggctt attgctttcg ctatgctttg cgattggctg ctcactagtt gccggtattc
     4381 agccaagcag tcgtggcgaa ttcggcattt acaatttagg ggcaagcatt acgtttttaa
     4441 tcggcaattt aacgctgatc atcgcaggct tcgatctcta ccacccttca atgcaatttt
     4501 ttaaacgctt tagcattggt gcgggcgtta tcggggcaat ctgtatttta atcacgattt
     4561 tcctaccaac cctgtttagc ccgttaattg aacgagcagg tatttatacc attatgctgt
     4621 gggaaatttt agccggtttt gccatcatta aacgcctgtt gaaattgccc tcattcagac
     4681 aacaaggata accaatgaaa cagattccct ttattcaacg ctatgctcaa ctgattgagc
     4741 taccgaccat ttccagcctt gttgccgaag aagatttatc gaaccgccgt ttgattgaat
     4801 tgctcgccac ttggctggca gatttcggct ttaaaaccga gattttagcg gtagaaggca
     4861 gccgtaataa atacaattta cttgcgacct atggcgaggg tgagggcggc ttattattgg
     4921 cagggcatac cgacaccgtg ccgtttgatg aaggaaaatg gcgcttcaat ccattccaat
     4981 taaccgaaaa agcaggcaaa ctctacggct taggcacggc agatatgaaa ggctttttcg
     5041 cctttgtggt ggaggttgtg agccaactcg acctaaccca aatcaaaaag ccgattcgca
     5101 ttcttgccac cgctgatgaa gaaaccacaa tgctgggggc aagaaccttt gctcagcaca
     5161 gccacattcg ccccgattgt gcgattattg gcgagccgac ctcgctcaaa ccgattcgag
     5221 cccacaaagg gcatattggc gaatcggttc gcattaccgg cagaagcgga cactccagcg
     5281 accccgccaa aggcattaat gcgattgaat taatgcacca atctatcggt tatttaatga
     5341 aaatgcgtga tgaactgcga gagaaatacc acaatccgct gttccaagtc acccacccga
     5401 caatgaactt cggcaatatt cacggcggcg atgccattaa ccgcatttgt gcctgttgcg
     5461 aattgcaatt tgatatgcga ccactaccga atatggcggt gcaagatttg tatgcaatgg
     5521 taaacgagca tttaaaaccg atgctggaac aatatggcga tttaattgaa atccgccatt
     5581 tacacgatgg aattccgggc tacgaatgcg aacactcggc acaaatcgtg caagtggttg
     5641 aaaagctact gggcgaaaaa tgcgatgccg tcaattactg caccgaagcc ccattcattc
     5701 aacaactctg cccaacgctg gtactaggcc ccggctccat tgaacaagcc caccagcccg
     5761 atgagttttt ggaaatgaaa tatatcgaac cgacaaaaga gttattgact aaattgattt
     5821 atcatttttg tggataaatc aacagaaaca agcgctcatt ttcgccatac tttttgcaaa
     5881 agaatcggca aaaatgaccg cttgatattt agtattgagt gacctataaa cttccatact
     5941 tcatcattga tttaaggaga ttctgttaga taggtattaa tctctagcta ggtcttggat
     6001 acaaacggcg agaatgaatt atagtaataa tatatacttt ttctaggtgt atctcataga
     6061 caatacgata attgcggcag aatgtttcta atgtgccatc ttctctacgt cgccctattg
     6121 taggcataaa tgcaatgaga tcgagtttat tttgtaattg ttcccaaagt gaaactgcgc
     6181 tcaaccaatg ccctgtataa tcttctaccg actgtaaaat ctcaatgaca ttagaccttg
     6241 cggtaagtga cagctcccaa gatttaggca taattaacct caaacaaatt ttcattttct
     6301 cgtaattgct gacgtttctg catatccgca aataaatgat ttaattcgtt attgatttgt
     6361 tctttggtaa aggtttctcc tcgagctatt gcttcttgac cagctttaat ttgctctgca
     6421 agaaactcat catatccttg ttctttgaat agcatattct gctcctttga tttgtgtctt
     6481 gattccacta tgttcaagac atagtttaag tttaaatcta cgctcaaagc aatgaagagt
     6541 caagggaatc cttatgttga tagggtgtgc atatttttcg agtcaaatga attaaaaatc
     6601 atcattacga tcacccactc atagatttta tcttcctatc taaggtcatc ttcttatatc
     6661 aaacaagcgg tctaaatttg caaaaaaatg acaaatttag accgcttgtg agttacaaaa
     6721 atataaacta attgagctta tcaattactg cgcataacta aatactttca ccactttggt
     6781 tactccacct acattgcgag cggcttcggc ggcggcatca gcttggtttt ggctgacttt
     6841 gcccattaaa aacacttcgc cgttttcggt gacgactttc acttcggtgg cttttacctc
     6901 gctatttact aacagtttgg atttcacttg ggtggtaatc cagctgtctt gtgtaatctg
     6961 tccaaagccg attttttcgc cttggcggat ttcgttgtaa atttccgtca cgccctccgc
     7021 cccagcagcg aggtttttcg cattttccac tacgtccata cttggtgctt gcccgattaa
     7081 taacactttg ccgttgtaag ccaccacgtt aatgcgggct tcttgtttga tttgctcgtc
     7141 tttattaatg ttgtaagcga ctttttcttc taaaatttca tcatcaactt gcgtgccggt
     7201 ggtgcgtggg tctgtcgcca ctttagttgc aaccgccgca gaagtcacca ccgccgtggt
     7261 gatacaacct tgtaaagaga taaaacctaa tactaatagg ctgcccttta atagtttatt
     7321 tgctaatttg ttcataatct ctccttacga aaatagtaaa tggtcgataa gttcacataa
     7381 taaattcaca taaaaatgat ggctttcaat caccctcagt tgattggttg aaggggctga
     7441 aatttcaata tcactttcat ctaataagcc gagtgtgtgg tcgttattac tgcctgttaa
     7501 agcaataata tctaaatcta aatgttgatt tttcgccgta tgaatagctt gcaatataca
     7561 ttcttcatta cccacaggcg aaaaaacaat gaagagatca ccctcttttg caaccgcctg
     7621 caactgtttt ttataaacag cctctaactc gttatcttgt gccacaactc ctgccaatac
     7681 accgcttaat tgcagttgta cggcagcaaa actcggtctt gccagttcat aacggtgaag
     7741 taagtggctg accaataatt cggcattacc gtaagagcga ccgtgtccgc agacgataac
     7801 tttatcgcca cgcaacaaac aggcaacaat gcggtttgcc gcttcactta atttagccgg
     7861 caatagctca gaggcggaaa tttgggtttg aatactttcg gtaaatctat cttggatttt
     7921 atttaacatt ctttctaacc taaaaagttg ggaatccaca caggcgtttg gtttccttca
     7981 aaagcaacca catcaaaacg gcaatttgca gtttctaaac tttggttttg tttaagcaac
     8041 cacatattag cggcattttg ccatttttgt tgcttgcggt aatcaatact ctcaacggct
     8101 gaaccgaagc ggttgctttt acgctggcga acttctacaa acacaacggt ttgtccgtct
     8161 tgcataatcg gatccagttc gccaccttta aatgcttggt tagcggcaac aaaacgaagc
     8221 ccttgctgtt ctaaaaacac tcgggctttt tgttcataaa acgagccttg ttcccgttta
     8281 ttaataagct tgttgaatag ctccattgcg atattgcatc caagataaac tacgttcaat
     8341 attacaatgt tgtccggctt ttaactcacc ggttaaacct gaaattttgt agcccggaat
     8401 atggcggaat tcattgaatt tggttgccaa tgaccacgca tcagccccca ttgcgtataa
     8461 acgcatcatt gagaaatcgc tattggctaa attctcggct tttttatatt cactagaact
     8521 ttgatcagct aacagtggca cttcactaaa ttttacccct tccattgaag tgtaaaaatc
     8581 aatgccgtta tttggcgaat tactgcgaga tgaggtatag atcgctaaac gatcttttaa
     8641 ggttgagcta tcaatacctt gtttaatttc taatacttgc tcggcattcc ccaaaatata
     8701 taaagctgct ttgctcacac ctgcattttg aatagcggca acggcatcaa gcggttggtt
     8761 gtagtaacgc acatcagcat cgctattggt aagctgacgc cagcgtttgg caaaggcttc
     8821 tgccgagcgg ttgccgtagt catcttgagg ggccgcaacg atagcgacac tattaccgtc
     8881 ttgataaatt ttttccgccc ctgattgtgc ctcagattca ggagataaac cgtagtaaca
     8941 cacctgagca atattacgca cattttcagt ggcattcagt gccaaaatat tcacgttttg
     9001 gatttctggg ctaagtagca tttcatcaac acgagatttg agcaatggcc cgacaatcac
     9061 atttgcccct tgctgttttg cctgtgaaat taaggaatta acatcagatg aatcggtatc
     9121 aaaagtttgc actgcggttg agtcatcagc cttagcatca ttaaaaccac gcttgataat
     9181 atcacccaaa atttttgcat caccacttag aggcaatagc aatgcgacac tgtttaactg
     9241 ggtttgttgg aaattactca ccccttgtaa ttccgttggc attacggcaa ccgcactatg
     9301 gctcgggtat tgggctttcc aattattaat tgcttgtggc atttgtgccg gtgtcgtcac
     9361 attttgatta tagatattaa ttaatgccaa ccaaccagca agctccatct cacccgcttc
     9421 aggcacagtt ttttccagca ttcctcgatt tgcatcacgc aaggtttgcc aaataatatc
     9481 gttattttct tggcgttcac ggttcatttt atagaaattg ttaagttgcg atcttgcacg
     9541 cacaatgcca atcacatctt tctgattggc agcaatacgg gcttgggttt gaatataacg
     9601 caaacgctgt gccgaactta atagcggatc ttgaatggct tttaattggc ttgttgcttg
     9661 ctcgtttttc ccttgtaagg cggcaagctg ggcggaaacc aaggcatact ctaacttttg
     9721 cacctcgttc atctctgcgg tcagaatttc actaaaggta ttttgagcct catattcctt
     9781 attttcatca attaatttgc gtacagctaa aagttgatac gaaattttat cttccgcttc
     9841 tttggtttga tctgctttat taatatagaa ttccgagctt gaataggctt catttttaat
     9901 ggattcggtg acaggattta ccgatgtaca ggcagaaatg aataatgcaa tcgccgttgg
     9961 caccaatgcc tttttcattg tatggtttaa aatagttgcc attgtcagat cctcaataga
    10021 atataatgtg ctaaatttaa tgtgaaatct tacttatcaa acgagctaaa agcaaatgaa
    10081 aaacagacaa aattcatctg gaatcaaccc aaattacgga attttatata ttgttgccac
    10141 gcctatcggc aatttaggcg atattaccca acgggcgtta gacacccttt catctgtcga
    10201 tttagtcgcc gccgaagaca ctcgccacag cggtttattg ctgagccact acggcattaa
    10261 aaaaccgttt ttcgccttgc acgaccataa tgaacagcag aaagcggtcg ttttagtcga
    10321 aaaattagca aaaggggaaa acattgcgtt aatttccgat gccggaacgc cactgattag
    10381 cgacccgggc tttcatcttg tccgtcattg ccgccaagcc ggggtaaaag ttgtgccgat
    10441 ccccggggct tgtgccgctg ttactgcctt atgtgcttca ggcatagctt cagaccgttt
    10501 ttgttttgaa gggttcttac cggcaaaaac aaaatcccgt tgcgataaac ttaccgagct
    10561 tgaaaacgag cctcgcacac tgatttttta tgaatccacc caccgtattt tagacactct
    10621 tgccgatatg cagactgttt ttggcgaaga tcgctatgtg gtaatggcgc gtgaaatcac
    10681 gaaaacgtgg gaaaccattt atggagatca actgggtaac ttaattgaat ggctaaatga
    10741 ggatagcaac cgaattaaag gcgaaattgt tctggtggtt gaaggtaaac cgcaaagtag
    10801 tgaggaagcc ttttccagcc aagcgatcaa attactgaca ttactctgcc aagaacttcc
    10861 gcttaaaaaa gccgctgcca ttgtggcaga aaccttcggc tataagaaaa atgccctgta
    10921 tcaatatgga ttggagcatt ttgagtaaca gacaagcggt cagattttgt gagttttttg
    10981 cagattggca ctcccctctc tctgaaaaat gtttctgaac gaaacatttc ccggtctcaa
    11041 tactcgctac gctcgctcct tcggagccgt tggcaaagcc aacgttcaaa tgtaaacatt
    11101 tgtcccataa ggggagagag ctaaattatt cgcttgtcga cccctctcca ctcgtgggag
    11161 agggacagat tcttcttcgt tcagaagaaa aatcagggag agggggaagt ttctcgcact
    11221 aaattccgat aagcatatgc cataatcgca aacatcaaca gcaagtaaag cggtaataat
    11281 tgaatgctga tagcattagc aataaagccg aaaatcggtg gcaataacag gacgccgata
    11341 taggcacttg ccatttgcac gccgatcacc gattgagact tgtcctcgcc gaaaaacgca
    11401 ggggtcgaat gaattaagca cgggaaaatc ggggcacaac ctagcccgat aataattaaa
    11461 cttgccagcg taacatattt gcctaacggc aagcacagta tcgcaatgcc gactaagatc
    11521 aaggctgaac caagtttaat catttgtctg ttgctaaatt taagcgtcaa gaagccactt
    11581 acgcctctgc caacggtaat gccgataaag aaaatactgc cgaacgcagc cgcttgttct
    11641 aagccgacat ctttaaccat tacaaaatag ctactcgccc acagtccggc ggtttgttct
    11701 acgccacaat agccaaaaaa agctaaaatg ccatatttca cgcccggaat ttttagcgtt
    11761 tcttttaagc tcatcggttt tgccgaatgg ttgatttcag cggtaatctg cttgcgtaat
    11821 ttccaaaaag gcagtgagca aaacagcatt agcgttagcc cgatttgtaa cattgaaatg
    11881 gtgaaatagc ctgcctccca gcctcgccct tgcaataagg cgtagcctaa aatgtgcggc
    11941 ccgatagaag ctccaacgcc ccacatacaa tgcagccagc tcatatggcg gcttgcgtag
    12001 tgaactgcta catagttatt caacgccgca tcaaccgctc cagcccctaa gccgtaagga
    12061 attgcccata aacataagat ccagaaagca tcactgattg aaaagcccca caatgctaaa
    12121 gccgttaagg caacgctgat gaccattact ttgcctgtgc cgagatggta ggtcagtttg
    12181 tccgacatta agctagaggt aatagtgcca atcgacataa tcatcgagac cacaccggca
    12241 taggaaagcg gaacagcaag ctgttggtgc attgacggcc acgccgagcc taaaattgca
    12301 tcaggcaacc caaggctgat aaaagagaga taaataatag cgagtaggag gttagtcata
    12361 gcttacaatc ggtcacaaaa agcatcgctt tttgaacgtt ggctctgcca acgggagcga
    12421 agctgtgaac aatccttaca aggattgtga ataatttttg ataaattttt tgtaaaaaaa
    12481 tggcttaagg agaccttaag ccaaatttta ttatttcact tctgccaaat aggccttatt
    12541 agcacggtca aaggtgtcta atacggcttt gcttggcatt ggcgtgataa gtgataccac
    12601 aatgatcatt agggtagcag caataaagcc cgggatcatc gagtaaattt ccggtaaggc
    12661 gagcttaagt gtaatatcgc cccaaaaatg cacgattaac gcaccggtca gcattccggc
    12721 aatcgcccca aaaccgttca tacgtttcca gaatagtgaa agcaatacca caggcccaaa
    12781 tgccgagccg aaacctgccc acgcattacg cactaagcca aatactttgc tgtccgggtc
    12841 ttgggcaata taaatagcta atgctgccac cgcaagcacc atcaagcggc ttaaccaaac
    12901 cagttcttta tcggaggctt gagggcgtaa aatgcctttg tataaatctt cggtaatcgc
    12961 acttgaacaa atcagtaatt gagcggaaag ggtactcatt accgcagcaa gaatggcaga
    13021 taataaaatg ccggctaccc aagggttaaa taacaattta gctaattcaa tgaaaatttg
    13081 ttccggattt ttgctgatat tgccgacttg ctccgggttg ccaaagaaat atgccatacc
    13141 aaaataacca atgcctattg cccccagtaa gcagataatc atccaagtca tactgatacg
    13201 gcgtgcattt tcaagagact tcacactttc tgccgccata aaacgcacca caatatgcgg
    13261 ttgtccgaaa taacccagcc cccacgccat taagctgata atgcctaata cgctggtgcc
    13321 ggtgaaaatg tcgttgtagt ctttttgtgc catctcgcct gcacggtcga ttaaggcttg
    13381 catttcatca aaaccaccta agttatacat cacaaaaaac ggggtgagaa tcagggcaaa
    13441 aaccattaat gaagcttgaa tagtatccgt ccaacttact gctaagaaac caccaataaa
    13501 ggtgtaaaga atggtagcaa cagccccata ccaaattgct tggtggtaag gtaagccaaa
    13561 taagttttca aataccctcg caccggccac aacgcctgat gcacagtaaa ttgcaaaaaa
    13621 gagtaaaaaa atgaccgctg ataaaatctt aattaaacgg gttttatcgc caaaacggtt
    13681 atgaaaatat tcgggtaagg ttaaggcatc gccactgtgt tctgtatgcg agcgtaatct
    13741 gcctgcgact aatttccagt ttagataagc accgatagtt aaaccgattg cgatccagcc
    13801 ttcgatcaaa ccgcctgcat aaacggctcc gggtaatccc atcagcaacc agccggacat
    13861 atctgatgca ccggcagaaa gtgcggtcac aaagctacct aaacggcgac cgcctaaaat
    13921 atagtctgaa aggttattgg taacacgata ggcaataaag ccgatggcaa tcattcctag
    13981 aatatagaca acaaacataa ttgttgttgg atcaagacca aacattatta atgaatcctc
    14041 aagatttctt attgtataaa gattaaagtg agtaaagggt aaaagattac ctgaaataat
    14101 caaaatggca acacaaaatt accgtccgcc cagctcagct gaaatttttt ctgctgtttc
    14161 ttgaatagcc ggtagtagat tttcccgccc cagctgattt aaacgagcag ttgaaagcga
    14221 aacagaaatc gcataatgga ctttttgttg gtgatcaaaa atcgggcaag caatacaaga
    14281 aacccctaat tcattttctt cgttatccat tgcaaaacct tgacggcgaa tggtttccag
    14341 ctcggtttgc attccgtcaa tcgtggtgat ggtattgacc gtcagttttt gaatgatgtc
    14401 cgatttagtc tgccaatatt gtggaatgta atctgccgaa ccataagcaa gaaacagttt
    14461 tcccattccc gagcaataga gttgcatttg ttgcccgata taggctcggg tacgcatcat
    14521 tccggtggta gcttctaatt tattgattaa aatagcgtga tcgttttccc gcatcgcaaa
    14581 atttaccgtc tcgcctaagg ttaaatttag ggcttctaaa tgtggggcgg caatatgcaa
    14641 aatgttaatc gaacttaagg ctcgctgccc gattgccaaa catttggtgg ttaaacgata
    14701 actgcccgca gtcggtgcag ggcggacgta gccctcttgt tgtaagcctt gtagcagacg
    14761 gtgaaccgtg cttttgttca gccccgaaag ctcggctaaa tgggcaagcg gacagccgtt
    14821 tgggaatttc gctaacaatt ccaatagtgt taagccacga attaaacttt gatttccact
    14881 cgattccttt tctttctttg cattcatttg gctgctccca aaataatatg atctaacggc
    14941 atatcccaac tctcaatcgg taattgttcg acttgctgac attcgtgtgc caaaccgaca
    15001 ctaatcagat gaggtgcttg agcaagggtt ctatcataaa agccacctcc cattcccagc
    15061 cgatttccgg ctttatcaca agcaacaagt ggggtaaaaa tcatctctaa ttcttgcaac
    15121 ggaaggatat ttctaacatc taatatcggc tcttgaatcc ccaagcggtt aaattttaga
    15181 atagttttgc aattgtaatt tacaaacaat aattgaccgc ttgtaaaagg gtgcaacagc
    15241 ggcagataca gctttttgcc ctgttgaagt aattgttcca ttaaaggaat aggagaaatt
    15301 tcaccgttaa aaggcaaata aaaggcaata tgtgagactt ggtaagattc aatcaatgaa
    15361 agagcttgag gaataatgga ttcggctgct tgagtttgct gaccggcagt taaactttgc
    15421 cgtttaagcc gcattgattg ccgtaattgg ctacgaagat cggttaaaga tgattgattc
    15481 atataaagac ccgagatgcc gctaccagta atggtccttg aaccagtcgg ttcaagggag
    15541 tcaaacttaa ctgcttttag gcttcttact cctaattaaa ttagggtaag cttgctcacc
    15601 agcgttagat gtccaactca aagtttcaaa ttatcggctc agggacgtaa ctcgtaacgc
    15661 acaccccagg caagacttat agtaacggaa tttgatgatt tttcctagta tttaatccca
    15721 caaaatgcaa attctcaatc tttttggctc tattcctaat caattcgatt aaaaattacc
    15781 taattggatt gaaatttgcc aagcgaatta tctaactgct caatacaagc caccaacaca
    15841 tttttatttt ctgcattttg gcgttgggct tgctccagtt cataatttaa attcagtgcc
    15901 acaatcgcta acactttttc aagctgaata atgccggact gctctttcaa taccaccaca
    15961 cgctcttcca aacgctgtgc tgaagccagt aaatgctctt gctgttcaac agggcattgc
    16021 aagcgtaaaa cctgcccaaa aatctgtagt tcgatattat ttgccgacat aaatacgaaa
    16081 tcctcactta atcgcaaaat ttttgctata ttatgccatt ctttagcaaa atcacaaata
    16141 atcccattat ggctatcaca gattcccaac aatttaaaca actggtatca caattacaaa
    16201 ttgatgatac accggcagag tttcacggtt ttttatgcgg tttaattgcc ggcggtattc
    16261 aagatgagtc ttggaaaacc ctcacctacc aatttaccaa tgacggacac gcattttcca
    16321 tcgagccgtt aaacacttta accgattttt atcagcaatt aagtgaaagc ttttcagaag
    16381 ccaacacgct gtttagcctt tggttgccac aaaacgaaga agatggtttt gccttagctg
    16441 atggtatctc cgaatggaca aacagtttct tacttggact tggcgttgct caacctaaat
    16501 tacaacaaga aaccgatgag gttggcgagg caatcgatga tttagatgaa atcgccaaac
    16561 taggctacag tgacgatgat aataacgagg aactactgga ggctggcgaa gaagtgttgg
    16621 aatatctgcg agttttagcc ttattcttgc acagccattt tgctttaggc gtgccgaaaa
    16681 ccgaagaaaa gccaccatta cactaatgaa taaatacaag cggttcaatt tcatctctat
    16741 tttgcaaata tattatgcgg ggcgaaaaat atttcgcccc taccaaaatc aaaggaaaaa
    16801 ccaatgtcag aattaaaaaa cgatcgctat ttaaaagcgt tattgcgtga acctgtggat
    16861 atgaccccgg tctggatgat gcgtcaagcc gggcgttatt tgccggaata taaagccacc
    16921 cgagcagaag ccggcgattt tatgtcactc tgccgtaacg ctgatttagc gtgtgaagtc
    16981 accttacaac cgctacgccg ttatgaactc gatgcagcta tcctattttc cgatatttta
    17041 actgtgcctg atgcaatggg attaggttta agttttggtg caggtgaagg ccctaaattt
    17101 gcccgcccgg tggcaagcct caatgatgtc aatcagctac cgattcctga tccggaagac
    17161 gagttgcaat atgtaatgaa tgcggtgcgt accattcgcc gagaattgaa aggcgaagtg
    17221 ccactaattg gtttttctgg cagcccttgg acactcgcca cctatatggt ggaaggtggt
    17281 tcaagcaaag catttaccaa aatcaaaaaa atgctttacg ctgagcctca cattctacac
    17341 aaattgctgg acaagttagc tgacagtgtc atcttatact taaatgccca aatcaaagcc
    17401 ggtgctcaag cggtgatggt attcgacact tggggcggtg tattggctca cgaggattac
    17461 aaagccttct cattacacta tatgcacaaa attgtggacg gcttaattcg agaaaatgaa
    17521 ggacgtaaag tgcctgttac cctattcacc aaaggcggag gcttatggtt agaagcgatt
    17581 gcagaaacgg gctgcgatgc cgttgggcta gattggacag tcgatattgc cgatgctcgc
    17641 cgccgtattg gcgacaaagt tgcgttgcaa ggcaatatgg atccaagcgt gctgtatgca
    17701 agccctgaac gaatcgaaca agaagtaaaa aacattcttg ccggcttcgg caacggcagc
    17761 ggacacgtct ttaatcttgg acacggcatt catttagatg tgccggtgga aagcccgaaa
    17821 gtgtttgttg atgcgattca caactactcg aagcagtatc ataaataatg gataaaatgc
    17881 cctctctcct tgtgggagag ggacagattt ttctttgttc agaagaaaaa tcagggagag
    17941 gggcaagcgg tcatttttat acagaatttt gcaaaatcgt tcccttctct ctgaaaaata
    18001 aagaaggaaa tacaatgaga aacccgattc ataaacgcat ggaacgtttc gagccttggc
    18061 aaaacaccac atttatggcg tgcctatgcg aaagaatgta ccccaactat cagctttttt
    18121 gtgaagtaac cgaacagcct gaaaaagcta aggtattcca aaatatttta aatttagtct
    18181 gggaatattt aaccataaaa ggggcaaaaa ttaatttcga taaccaactg gaaaaattag
    18241 aagaaatcat tcctgatgtg aacgaatatg cgttttttgg tgtcttacct gcacaggaag
    18301 cttgcgaagc cctttctgaa cttcttcaca gtattatcgc tggttcaacc cttgaacaag
    18361 caatccgcat cagccaaatt tcattaggca cagttgccag ctatttggaa atgcaacaag
    18421 ataaagaact gaacgagcaa gagctaaaga attctgaaga aattcaagaa gaactggacg
    18481 tacagtggca aatataccgc ttgctaaacg aatgtgaaaa acgtgatctt gatctcattt
    18541 ttgaacttaa agatgaaatc agaagcagcg ggattagtaa tatcgggtta aatattaacc
    18601 aatagcattg atatttgcaa aatcttgctt aataatactt tgagaaatct taactttgaa
    18661 ttaagctatc gcaaggtttc aataacttct cagacgtttt acgtcattta ttaaaaacac
    18721 atatcttaga ggataaaact atgaacaaaa ctgagttaat cgatgctatc gccgctggtg
    18781 caaacttaac caagaaagat gctaaagcag cattagaagc aactcttgat gcaatctctg
    18841 caagcttaaa agcaggcgac gctgttcaat taatcggctt cggtactttt aaagtaaatg
    18901 agcgtaaagc acgtactggt cgtaacccaa aaactggtga agagatcaaa attgcagcag
    18961 ctaaagtacc tgcattcgtt tcaggtaaag cattaaaaga tttagtaaaa taatt
//
LOCUS       DANMBQ010000035        19010 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.035, whole genome shotgun sequence.
ACCESSION   DANMBQ010000035 DANMBQ010000000
VERSION     DANMBQ010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19010
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.035"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            31..714
                     /locus_tag="PXE92_001073"
     CDS             31..714
                     /locus_tag="PXE92_001073"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HDL5760336.1"
                     /translation="MQLVFIRHGFSEWNAKNLFTGWRDVNLTERGIEEAKSAGQKLKA
                     AGFEFDIAFTSVLTRAIKTCNIVLEESDQLWIPQVKNWRLNERHYGALQGLDKKETAE
                     KYGDEQVHIWRRSYDISPPDLDPQDPNSAHNDRRYANLPKDLIPNAENLKITLERVLP
                     FWEDHIAPALISGKRVLVTAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYELDDN
                     LKVISKRYL"
     gene            complement(851..1408)
                     /gene="frr"
                     /locus_tag="PXE92_001074"
     CDS             complement(851..1408)
                     /gene="frr"
                     /locus_tag="PXE92_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDL5760337.1"
                     /translation="MINEIKKDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDGIQVEY
                     YGSATPLRQVANVVAEDARTLAVNVFDKSLISAVEKAILTSDLGLNPSSAGTTIRVPL
                     PPLTEERRRDLIKIVKAEGEQGKVAIRNVRRDANDQIKALLKDKEISENEQHKAEEDI
                     QKITDTFIKKVDEVLAAKEKELLDF"
     gene            complement(1460..2176)
                     /gene="pyrH"
                     /locus_tag="PXE92_001075"
     CDS             complement(1460..2176)
                     /gene="pyrH"
                     /locus_tag="PXE92_001075"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDL5760338.1"
                     /translation="MSKPIYKRILLKLSGEALQGSEGFGIDPSILDRMALEIKELLAE
                     GVEVGVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAEVNAKLM
                     SAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGSPFFTTDSAACLRGIEIEADVVLK
                     ATKVDGVYDKDPAKYADAKLYNKLTYAQVIEQELQVMDLAAFTLARDHGMPIRVFNMG
                     KPGALRNVVFGTEEGTTISE"
     gene            2268..3830
                     /locus_tag="PXE92_001076"
     CDS             2268..3830
                     /locus_tag="PXE92_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL5760339.1"
                     /translation="MKSKQLFGILVAISLATAASCLMLIGSGFFPNPSIFEVILGVFL
                     IIALASSKWTYYLLLLPISIAYAIYTPVGIKFGKPTYEYIASIFATDMMESKEFIAQL
                     PILNIAAGIAIVLAVIFYRKITNRYQIRFLRNKTFVISAFVLMLFSLAPFKFFQEFYN
                     SSLKVKKELEVLNNLTLDSQWGQSTLSSTSNYDDYVLIMGESARKDYHHAYGYPAANT
                     PFMSSAKGTLIDGLTSGGTNTIASLRLMLTKPDTEKWEANYGLTLIDLIKSTGIKTYW
                     ISNQGYLGNYDTPISSIGNKSDVKIFTKAGDSLNTNVSDFELLPHFAKVIEEPAQGKR
                     FIFLHLYGSHPITCDRLTDYPKMFDDDKLPKRYFNVNCYVSSIKKTDELLKRVYDLLV
                     KNQENHQRSFSMVYLSDHGLSHEVSKENIVIHNGKDRSKLHYDIPLFKISSDDTQRNE
                     YKAFKSGLNFTNGIANWIGIENPLLDKEINLFNEQNDKSDYGLKKIIETQSTVEDPAV
                     PIPESYLYKATN"
     gene            complement(3894..4745)
                     /gene="tsf"
                     /locus_tag="PXE92_001077"
     CDS             complement(3894..4745)
                     /gene="tsf"
                     /locus_tag="PXE92_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDL5760340.1"
                     /translation="MAEITASLVKELRERTGAGMMECKKALVEANGDIELAIDNMRKS
                     GQAKAAKKAGRVAAEGVILARVASGFGVLVEMNCETDFVAKDAGFLELANEVADFAVA
                     NKGTTIEALQAQFEEKRAALVAKIGENMNIRRVQYLEGEVIAQYLHGAKIGVLVAGAG
                     SEDELKKVAMHVAASKPEFVNPEDVSADVVAKEREIQIEIAMNSGKPKEIAEKMVEGR
                     MAKFTGEVSLTGQPFVMDPSQSVGQYLKSVNTSVSNFIRLEVGEGIEKVEEDFAAEVA
                     KITGGNA"
     gene            complement(4841..5560)
                     /gene="rpsB"
                     /locus_tag="PXE92_001078"
     CDS             complement(4841..5560)
                     /gene="rpsB"
                     /locus_tag="PXE92_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005645552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDL5760341.1"
                     /translation="MAQVSMRDMLNAGVHYGHQTRYWNPKMKPFIFGARNGVHVINLE
                     KTLPLFNEALAELTRIASNNGKVLFVGTKRAASDAVKAAAVESQQFYVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQTQDGTFDKITKKEALMRTRELEKLELSLGGIKDMNGLPDA
                     IFVIGADHEHIAIKEANNLGIPVFAIVDTNSTPDGVNYIIPGNDDATRAIQLYLDSAV
                     AAIKEGRGVETVEVAEEASAE"
     gene            5905..6933
                     /locus_tag="PXE92_001079"
     CDS             5905..6933
                     /locus_tag="PXE92_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5760342.1"
                     /translation="MKKTLSALAIAAATFTSTSTLAANEVNVYSYRQPYLIEPMLKNF
                     EKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVL
                     EKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLDLAKPEYKGKVCVRSG
                     KNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGN
                     SYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYLS
                     GEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVK
                     FDDFSEKK"
     gene            7056..8702
                     /locus_tag="PXE92_001080"
     CDS             7056..8702
                     /locus_tag="PXE92_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5760343.1"
                     /translation="MRSQFCWKSIAALTTFIVLLPLIAICYHALQGDNENLAHLWQTM
                     LPIYLKNSTLLVLGTVFLALIFALPTAWIVANYRFWGQRTLQWLLCLPLAMPAYLIAY
                     LYTDLLDYSGAFQGWLRSIFGWTHPQDYWFPQIRTLYGACFVLALVLYPYIFLLVRVA
                     LLEQSENLTHSAKMLGASPSQLFRRITLPLIRPSVAVGIALVAMETLGDFGTVAYFAV
                     PTLTTAIYDSWLGYHDLGTASQIAIFMLLMIFLFLSLEQYSRRKQKSYQRGYEKKSAF
                     KFLTGWKLALALAWCWGLLALAFFIPFGRLLYWAYDYFEQAWNLDFVQFSLNSLKVSI
                     IASVITVLIALLLHFSKRLNTRKILVKNDRLSLQLASLGYAVPGTVLAIGLLSPLTFA
                     DHQLHAWLKSLELSPVGLIFSGSLFALVLAYTIRFLAMAIGSLETSLNKISPSLDMAS
                     QTLGKNGSAMLVKIHIPLIYKGILTAGLMVFIESMKELNASLLLRPFNFDTLATYVFT
                     FTSDEQLERAALPAIVLVLVGLLPVIWLTRSLISQSEKER"
     gene            8712..9722
                     /locus_tag="PXE92_001081"
     CDS             8712..9722
                     /locus_tag="PXE92_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5760344.1"
                     /translation="MSVLTINHLNLNFGSTKVLQNLHLAVNQNEIICLLGASGCGKTT
                     LLKAIAGLLPIEQGDIHLAGECLKSKAVEERQIGLIFQDYALFPHLTVADNIQFGLSK
                     LPKVQQKAITEKMLSVVHLQGFESRFPHELSGGQQQRVAIARALACQPELLLLDEPFS
                     NIDSQTRYAMIQEIKQILKSQNVPAIFVTHSKEEAFAFADKIAVMDQGKIIQFGKPNE
                     LYHSPVNPFVADFLGGTNYLNCNVTEDNVLCSPIGEFRLFPEMNVQKGRYRWLLRPEQ
                     IILKPNELGLGKVVGKLFLGLYYRYQVEIKGIEIVTYQSQELKIGEQVEVGFQVREFI
                     LF"
     gene            9732..10358
                     /locus_tag="PXE92_001082"
     CDS             9732..10358
                     /locus_tag="PXE92_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family oxidoreductase"
                     /protein_id="HDL5760345.1"
                     /translation="MKIEVWSDYACPFCYIGKRHLEQALAQFEGEVEVVFRAFELDPH
                     ANGEPEGDIQQRLMRKYQKTAEQADEMIRYVEQAGKQAGLDLRYRTTQYTRTFEAHRL
                     AKFAESKDLGEAMVERLFKAYFTDNTILAKRTELISLALDIGLERDEIAQLLTGDDFG
                     HEVREDERVAHKYGIHSVPFFVINEKLGVSGAQPPEILLDAIKQALQK"
     gene            complement(10420..11910)
                     /locus_tag="PXE92_001083"
     CDS             complement(10420..11910)
                     /locus_tag="PXE92_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 domain-containing protein"
                     /protein_id="HDL5760346.1"
                     /translation="MSLYQIARTETGKVISLNAKMANRHGLIAGATGTGKTVTLRKLA
                     ESLSDDGVPVFLVDVKGDLSGSVQAGNFSGKIAERILQFNLGGEDYLKGYPVSFWDVF
                     GTSGIPLRITISEMGPMLLSRLLNLNDTQGGLLNLVFRVADDRGLLLIDLKDLRALLK
                     FVADNAKEFQLEYGHISAASVGAIQRALLRLENEGADNLFGEPALDLHDWIQTRNGRG
                     VINMLNAEKLINSPRVYSAFLLWFMAELFENLPEVGDPEKPTFVLFFDEAHLLFDDAP
                     KALVDKIEQVVRLIRSKGVGVYFVTQNPLDIPDSVLGQLGNRIQHALRAFTPRDQKAV
                     KSAAETFRANKEVNVVEAITQLGVGQALVSVLDEKGMPTPVEIAYIYPPKSQLAPLAT
                     GERDSLVKQDDLYHHYSQYVDNESAFELLNAKAEAIKAEQAAAEEANNDFFGGILSSI
                     FGSKKKKDQSITEQVVSQVAHSVGRNLRNQVTKQIMRGILGAITKK"
     gene            complement(11969..13204)
                     /gene="rhlB"
                     /locus_tag="PXE92_001084"
     CDS             complement(11969..13204)
                     /gene="rhlB"
                     /locus_tag="PXE92_001084"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HDL5760347.1"
                     /translation="MSNHLTEHRFIDFPIHANVLNALDSKGFEFCTPIQAKTFPITLK
                     GKDIAGQAQTGTGKTLAFLIATFNHLLNNEIETSKNQPRALILAPTRELAVQIGADAE
                     LFLKHSDLKLALAYGGDGYDKQVQEIEKGVDILVGTTGRVIDYVKQGIINLDKIQVIV
                     LDEADRMFDLGFIKDIRYLMRKAPKPSERLTLLFSATLSAKVRELAYEDMDNAEYIEI
                     EPLQKTGHRIKEELFYPSNEDKMALLLTLLEEEWPERCMIFANTKHKCEEIWQYLSAD
                     GHRVGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVAARGLHIPDVTHVFNYDLPDDK
                     EDYVHRIGRTGRAGESGHSISFACERYAVNLPAIEEYIGHQIPVSQYDKESLLTLPKV
                     NRSRSKKTFLAKTKKNSRN"
     gene            complement(13292..14014)
                     /gene="recO"
                     /locus_tag="PXE92_001085"
     CDS             complement(13292..14014)
                     /gene="recO"
                     /locus_tag="PXE92_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HDL5760348.1"
                     /translation="MTIDQWQRAFVLHRREYSENSLLVEFFTEHHGRITLLAKGARRA
                     RSPLKAVLQPFTPLLLRWSGKGDLKTLTKAEPAALTLPMETLSLYSGFYINEVLARVL
                     ENQTAYPELFQHYLRCITELATQKQIEPILRTFEFHTLKALGYGVDFTHCAATGLPVD
                     PKMTYQFQENQGFIASLLQNNQSFLGSDLLAFAQLDFSEKSTQQAAKRFTRMALKPYL
                     GSQPLKSRELFQSILPNKLKSG"
     gene            complement(14244..15161)
                     /gene="era"
                     /locus_tag="PXE92_001086"
     CDS             complement(14244..15161)
                     /gene="era"
                     /locus_tag="PXE92_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013525392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDL5760349.1"
                     /translation="MTEQIQTPAKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRK
                     AQTTRHRIVGIHTEDQYQAIYVDTPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVE
                     GTKWTEDDEMVLNKLRSAKAPVLLAINKIDNIKEKEELLPHITELSQKFDFAEILPIS
                     AQRGKNVHILQKFVRQSLRQGEHHFPEEYVTDRSQRFMASEIIREKLMRFTGEELPYS
                     VTVEIEQFKMNERGVYEINGLILVERDGQKKMVIGAGGQKIKTIGIEARKDMERLFDN
                     QVHLELWVKVKAGWADDERALRSLGYMDE"
     gene            complement(15264..15938)
                     /gene="rnc"
                     /locus_tag="PXE92_001087"
     CDS             complement(15264..15938)
                     /gene="rnc"
                     /locus_tag="PXE92_001087"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDL5760350.1"
                     /translation="MQLERLQKKLGYQFHNLDYLIQALTHRSAATKNNERLEFLGDSI
                     LNFTIGKVLYDKFPKANEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGG
                     FRRESILSDCVEAIIAAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEF
                     LQGRKLPLPEYDVLDIKGEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKALA
                     VVKTKK"
     gene            complement(15984..16943)
                     /gene="lepB"
                     /locus_tag="PXE92_001088"
     CDS             complement(15984..16943)
                     /gene="lepB"
                     /locus_tag="PXE92_001088"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDL5760351.1"
                     /translation="MAQFMPIIFLGIIYGIWQWLDSMQLPNTISIILVALVIICGGFW
                     AFYKFSADPRRKQAIVLQQKRLGRELTAEEIAEIQPKSAVGEFFASLFGILFFVTVLR
                     SFLFEPFQIPSGSMEPTLRVGDFLVVNKFSYGIKDPIWQNTLIETGKPERGDVIVFKA
                     PAQPHVDYIKRVVAVGGDKIKYDFATQQLTVTKANGETKVFEYSEGKPNPEFFYHGEM
                     QVERTEKGNVTHQILNHPMAFNYAPYFYQQEGQAEGEWVVPQGYYFVMGDNRDNSEDS
                     RFWGFVPERNIVGKATFIWLSLDKKANEFPTGLRFSRMFTSIN"
     gene            complement(17030..18823)
                     /gene="lepA"
                     /locus_tag="PXE92_001089"
     CDS             complement(17030..18823)
                     /gene="lepA"
                     /locus_tag="PXE92_001089"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018345454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDL5760352.1"
                     /translation="MQNIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLNYKAKDGEIYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAIEIDLEVVPILNKIDLPAAEPERVAEEIEDIVGIDAIDAVR
                     CSAKTGLGIEDVLEEIVKKMPAPEGDAEAPLQALIIDSWFDNYLGVVSLVRVKNGVLK
                     KGDKIKVMSTGQSYNVDRLGIFTPKQVDTTELKTGEVGWVVCAIKDILGAPVGDTLTH
                     HHNPATEVLPGFKKVKPQVYAGLFPISSDDYEAFRDALGKLSLNDASLFYEPETSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVVQTSGETIYVDSPSKLPA
                     INNIAEIREPIAECNMLVPQEFLGNVITLCVEKRGVQTNMVYHGNQIALTYEIPMGEV
                     VLDFFDRLKSTSRGYASLDYGFKRFQTADMVRVDIMINGERVDALAIIVHRANAAYRG
                     RELVEKMRELIPRQQFDIAIQAAIGNHVIARSTVKQLRKNVLAKCYGGDVSRKKKLLQ
                     KQKEGKKRMKSLGNVEVPQEAFLAILHVGKD"
BASE COUNT         5537 a         4065 c         3503 g         5905 t
ORIGIN      
        1 attaatttta ctcaaagcta aggagtcatt atgcaattag tatttatccg tcacggtttc
       61 agtgaatgga atgctaaaaa cttatttacc ggttggcgtg atgttaattt aacagaacgt
      121 gggattgaag aagcaaaatc tgccggtcaa aaattaaaag cagccggttt tgaatttgat
      181 attgcgttta cttcggtttt aacccgtgcg atcaaaactt gtaacatcgt attagaagaa
      241 tcagaccaat tatggatccc tcaagtgaaa aactggcgtt taaacgagcg tcactacggt
      301 gcattacaag gtttagacaa aaaagaaact gctgaaaaat atggtgatga acaggttcac
      361 atctggcgtc gttcttatga catctctcca ccggatttag acccacagga tccaaactca
      421 gcacataacg accgccgtta tgctaactta ccaaaagatt taattccaaa tgcagaaaac
      481 ctcaaaatca cccttgagcg tgtgttacca ttctgggaag atcatattgc acctgcatta
      541 atttcaggta aacgcgtatt agttactgct cacggtaact cattacgtgc attagcaaaa
      601 cacatcgaag gcatttctga tgcagacatt atggacttag aaatcccaac cggtcagcca
      661 ttagtgtatg aactagatga caacttaaaa gtaatcagca aacgttactt ataattggta
      721 aatttccgat aaaaaataac cgcttgtagt gcaacacatt acaagcggtt attttttgtt
      781 aattttttgc aaatggcaaa gaacaaaaat aaaggcgaat catacattcg ccttattgtt
      841 ttaaagtaga ttagaaatct aacaactctt tctcttttgc tgctaatact tcatcaactt
      901 ttttaatgaa ggtatcggtg attttttgaa tatcttcttc agctttgtgt tgttcgtttt
      961 cgctgatttc tttatctttt aataacgctt tgatttggtc attagcatca cgacgaacat
     1021 tacgaattgc cactttgcct tgctcacctt ctgctttaac gattttgatt aaatcacgac
     1081 gacgttcttc cgttaatggt ggaagcggaa cacgaatggt tgtgccggca gaagatgggt
     1141 ttaaacctaa atctgaggtt aaaattgctt tttctaccgc agagattaaa gatttatcaa
     1201 atacgtttac cgctaaagta cgggcatctt cagctaccac gttcgctact tgacgtaatg
     1261 gagtcgcaga gccgtaatat tccacttgaa taccgtctaa taaagaaggt tgggcacgac
     1321 ctgtacgaat tttcgcaata tgccctttta aagcctcaag gcttttttcc atacgatctt
     1381 gggtatcttt cttgatttcg ttaatcattg attttttatc cttttattta gtaactgaga
     1441 gttaaacaga gaaaattaat tattcagaaa tggttgtacc ttcttcagta ccgaatacca
     1501 cattgcgtaa cgcccccggt ttgcccatat taaagacacg aattggcatt ccgtggtcac
     1561 gagcaagcgt gaatgctgct aagtccatta cttgtaattc ttgctcaata acttgcgcat
     1621 acgttaattt attatatagt tttgcatctg cgtattttgc tgggtcttta tcataaacgc
     1681 catcaacttt agttgctttt aataccacat cagcttcaat ttcaatacca cgcaagcaag
     1741 cagctgaatc ggtggtaaag aacgggctac ctgtaccggc agagaaaatc accacacgtt
     1801 tttcacgcaa cattttaatt gcttcagacc agttgtaagt gtcgcaaatc ccatttaatt
     1861 ggaacgcaga cattaattta gcatttacct ctgcacggtg taaggcatca cgcatagcca
     1921 aaccgttcat tacggtggca agcataccca tatggtcgcc cactacacgg ttcattcctg
     1981 ctttggctaa ttttgcacca cggaataagt taccgccgcc aagtaccaca ccaacctcaa
     2041 cgccttcagc aagtaattct ttaatctcta acgccatacg atccaaaata gacgggtcga
     2101 taccaaaacc ttcactgcct tgtagggctt caccacttaa tttgagaaga attcgcttat
     2161 aaataggttt gctcatttta attgcctctt aactgtatgg actaaacaca aaattacgtt
     2221 attatagaac aatccaatat aacgataaac taaaaatatt cactacaatg aaatccaaac
     2281 aacttttcgg cattcttgtc gctatttcgc tggcaactgc tgctagctgt ttaatgctaa
     2341 tcggatcagg cttttttcca aatccgagta tctttgaagt cattttgggc gtattcctca
     2401 tcatcgctct tgccagctct aaatggactt attatttact cttactgcca atcagcatcg
     2461 cttatgcaat ttataccccg gttgggataa aattcggtaa accgacttac gagtatatcg
     2521 cctctatttt tgctaccgat atgatggaaa gcaaagagtt tattgctcaa ctgccgattt
     2581 taaatattgc ggcgggcatt gcgattgtac tagcggtcat tttttatcga aaaattacca
     2641 atcgctatca aatccgtttt ttacgcaata aaacattcgt gatttcggct tttgtattaa
     2701 tgctgttttc ccttgcaccg tttaaatttt ttcaggagtt ctacaattcg agcctaaagg
     2761 taaagaaaga attggaagtg ctgaacaatt taacgctaga ttcacaatgg ggacaatcaa
     2821 ccctcagctc aacttcaaac tacgatgatt atgtactgat tatgggcgaa agtgcgagaa
     2881 aggattatca ccacgcctat ggctatccgg ctgccaatac gccttttatg agttcggcaa
     2941 aaggaacctt gattgacggt ttaacctccg gtggcacaaa cactatcgcc tcattacgct
     3001 taatgctcac taagcccgat acggaaaaat gggaagcaaa ttatgggtta accttaattg
     3061 atttaatcaa atctaccggt atcaagacct attggatctc aaatcaaggc tatttgggca
     3121 attacgatac gccgatttcc tctatcggta ataaaagtga tgtcaaaatt ttcactaaag
     3181 ccggcgattc attaaatacc aatgtgagcg attttgaatt gttaccgcat tttgctaaag
     3241 tgattgaaga acctgctcaa gggaagcgtt tcatctttct gcatttatat ggctcgcatc
     3301 ctattacctg cgatcgtctc accgattacc cgaaaatgtt tgacgatgac aaactgccaa
     3361 aacgctactt taatgtaaat tgctacgtgt catctatcaa gaaaaccgat gaattgctga
     3421 aacgggtata tgatttgcta gtgaaaaacc aagaaaatca ccagcgttca ttctcaatgg
     3481 tttatttgtc tgatcacggt ttatcgcacg aggtttcaaa agagaacatt gttatccaca
     3541 atggaaagga tagaagtaaa ttacactacg atattccgct gtttaaaatt tcaagcgatg
     3601 atacccaacg taatgagtat aaagccttta aatccggctt aaacttcact aatggtattg
     3661 cgaattggat tggtatcgaa aatccgttat tagataaaga aattaatctt tttaacgaac
     3721 aaaacgataa aagtgattat gggctaaaga aaatcattga aacgcagtct actgtagaag
     3781 atccagctgt tcctattcct gaaagctact tatataaagc gactaattag caaaagtaag
     3841 taacaaaaaa gcaggcttta agcctgcttt tttagttttt agtatcagaa aaattaagcg
     3901 ttaccgccag tgattttcgc tacttctgct gcgaaatctt cttctacttt ctcaatacct
     3961 tcacctactt ctaaacgaat aaagttagaa actgaagtat ttactgattt taaatattga
     4021 cctacagatt gagatggatc cattacaaac ggctgaccgg ttaatgaaac ttcaccggtg
     4081 aatttagcca tacggccttc aaccattttt tctgcgattt cttttggttt accagaattc
     4141 atcgcaattt caatttgaat ttcacgttct tttgctacta catcagcaga aacatcttct
     4201 gggtttacaa attcaggttt gcttgcagca acgtgcattg ctactttctt aagctcatct
     4261 tcagagcctg cacctgctac taatacacca attttcgcac cgtgtaagta ttgagcaata
     4321 acttcgcctt ctaagtattg aacacggcga atgttcatat tctcaccgat tttcgcaact
     4381 aatgccgcac gtttttcttc aaattgtgct tgtaatgctt cgatagttgt acctttattt
     4441 gcaactgcaa aatcagcaac ttcgttcgct aattctaaga aaccggcatc ttttgcaacg
     4501 aagtcagttt cacagttcat ttcaactaat acgccaaaac ctgaagcgac acgagcaagg
     4561 attacacctt cagctgcaac acgacctgct tttttagccg ctttcgcttg accggattta
     4621 cgcatattat cgattgctaa ttcaatatca ccgttcgctt caactaatgc ttttttacat
     4681 tccatcatac ctgcgccggt acgttcacga agttctttaa ctaatgatgc tgtgatttca
     4741 gccattttaa attcccctta tttgatatgg taaaacaggc tctcacctgc ctagaaattt
     4801 cattgtttag ggcaggttaa aacctgcccc ctcaactgaa ttattccgca gaagcttctt
     4861 ctgctacttc aacagtttca acaccgcgac cttctttgat tgcagcaact gctgaatcta
     4921 agtaaagttg gatagcacgt gttgcatcat cgttaccggg aatgatgtag ttaacgccat
     4981 ctggagttga gttagtatca acaatcgcaa ataccggaat acctaagttg tttgcttctt
     5041 taattgcgat atgttcgtga tcagcaccga taacaaaaat tgcatccggt aaaccgttca
     5101 tatctttgat accgcctaag cttaactcta atttttctaa ctcacgagta cgcattaacg
     5161 cttctttttt agtgattttg tcaaaagtac cgtcttgagt ttgagtttct aaatctttta
     5221 agcgtttgat tgattgacga actgttttcc agttagtcaa cataccacct aaccaacggt
     5281 ggtttacgta gaattgttgg ctctctactg ccgctgcttt aacagcatca cttgctgcac
     5341 gttttgtacc aacaaataat actttaccat tgttactagc aatgcgagtt aattccgcta
     5401 atgcttcgtt gaataaaggt aaagtttttt ctaagttgat tacgtgaaca ccattacgag
     5461 caccaaagat gaatggtttc atttttgggt tccagtaacg tgtttggtga ccatagtgaa
     5521 cgcctgcgtt aagcatatcg cgcatagaaa cttgtgccat aagaattttc cttcaaagtt
     5581 gtttgttttg ccacttatga acggcaaaac ggggtttagc ctccacatat cctagaaaat
     5641 caatctgtta aagacacccc aattcctagc ttgtgatatg tgtgtgtttt agtgttaaaa
     5701 aataaatgtg tacgttttgc ctgaatagac aaaaacgggg cgtattatgc caaaaaacaa
     5761 acaatttgcc aattatttta ttgctctctt cgcattacta aatcaagctc aaaaataaaa
     5821 accgttctca ttattgacta aaaaaatggg gaggtttaga atgtctttca ttctgttatg
     5881 aaaacctgtc tgaaggagac tatcatgaaa aaaacacttt ctgcacttgc tattgctgca
     5941 gccactttta catcaacttc aacgcttgct gcaaatgaag tgaatgttta ttcttaccgc
     6001 cagccttact taattgagcc aatgctaaaa aactttgaaa aagatactgg cattaaagta
     6061 aacatcatct tcgctgataa agggttggtt gatcgtgtaa aacaagaagg tgaattaagt
     6121 cctgctgatg tgcttttaac agtagatatt tcacgcgtaa tggaaattgt taacgctgat
     6181 cttgcacaaa aaattgactc taaagtgtta gaaaaaaata ttcctgcaca attccgtgac
     6241 tctaacgacc aatggtttgg tttaaccaca cgtgctcgtg ttatctacac gtcaaaagat
     6301 cgtgtaggta aattaccagc aggctttgac tacctagatt tagctaaacc agagtataaa
     6361 ggtaaagtct gcgtgcgttc aggcaaaaac tcttacaatg tctcactatt cgcggcgatg
     6421 atcgaacatt acggcattga aaaaaccaaa gcattcttag aaggcttaaa agcgaactta
     6481 gcacgaaaac cacaaggtgg tgaccgtgat caagtaaaag caattaaaga aggcatctgt
     6541 gattactcta tcggtaacag ctactactac ggcaaaatgt tagatgatga gaaacaaaaa
     6601 tcgtgggctg aagcagcgat tattaatttc ccgagtggtg aacacggcac gcacaaaaac
     6661 atcagcggcg tagttattgc aaaacactca ccaaataaag caaacgcggt gaaattaatt
     6721 gaatacctaa gtggcgaaaa agcacaaggt ttatatgctg aacttaacca cgaatatcca
     6781 gtaaaagaag gcatcgagcc atcagcaatc gtaaaaggtt ggggtacgtt caaatcagat
     6841 accatcaaac ttgaagatat cgcaaaaaat tacgaagccg cattaaaatt agttgatgaa
     6901 gtgaaatttg acgatttctc tgagaaaaaa taatcaaccg ataagcggtc atttttccac
     6961 aaaaatttgc aaaattttgt taaaatacaa ccgcttgcaa aaggacgcat tttgcgtcct
     7021 tttatttttt tatgaaataa caggcttaaa gaaaaatgcg atcacaattt tgctggaaaa
     7081 gtattgctgc cctaacaact tttatcgttt tgcttcctct tattgcaatt tgctatcacg
     7141 cattgcaagg ggataatgaa aaccttgctc acctttggca aacaatgttg ccaatctatc
     7201 ttaaaaactc aactttatta gtattaggaa ccgttttcct tgcactgatt tttgctctgc
     7261 ctaccgcttg gattgtggca aattaccgtt tttgggggca aagaacctta caatggttac
     7321 tttgtttgcc tctcgctatg cctgcttatt taattgccta tttatatacc gatttattag
     7381 attactcagg tgcttttcaa ggctggctgc gtagtatttt tggctggact catccgcaag
     7441 attactggtt tcctcaaatt cgtacattgt atggtgcttg ctttgtgctt gcgttagtac
     7501 tatatccata cattttttta ttagtgcgag ttgccttatt agaacaatct gaaaacttaa
     7561 cacacagtgc aaaaatgctc ggggcttcgc cctctcagtt gttccgtcga attacgctgc
     7621 cattaattcg accttctgtt gccgtaggca ttgcattagt ggcaatggaa acgcttggcg
     7681 atttcggtac tgtggcctat tttgccgtgc caacacttac tacggcaatt tatgattcgt
     7741 ggctaggcta tcacgatctt ggtactgcca gccagattgc gatctttatg ttgctaatga
     7801 ttttcctgtt tttaagttta gagcaatata gtcgccgtaa acaaaaaagc tatcaacgtg
     7861 gctatgaaaa gaaatcagcc tttaaatttt taactggttg gaaattagca ttagcccttg
     7921 cttggtgctg gggtttattg gcgttagcct ttttcattcc gtttggcagg ttgctctatt
     7981 gggcatacga ctatttcgag caagcgtgga atttagactt tgtccaattt tcgcttaata
     8041 gtttgaaagt atcgatcatc gcctccgtga taacggtact gattgctcta cttctgcatt
     8101 tttctaaacg tttgaatacc cgcaaaattt tagtcaaaaa tgaccgcttg tcattacaac
     8161 ttgcctcact gggctatgcg gttcctggca cagtattagc gatcggttta ctttcgcctt
     8221 taacatttgc cgatcatcaa ctccatgctt ggctaaaaag ccttgaatta tcacccgttg
     8281 gattgatttt ttcaggctca ctctttgcat tagtattagc ttataccatc cgatttttag
     8341 caatggcaat tggcagcctt gaaacttcgc taaataaaat ctctccatcg ctggatatgg
     8401 cgagccaaac gcttggtaaa aatggctcag caatgttagt aaaaattcat atccctttaa
     8461 tttataaagg tattttaact gcaggattaa tggtctttat tgagagtatg aaagagctaa
     8521 atgcttctct gctacttcgc ccatttaatt ttgatacact cgcaacctat gtgtttacct
     8581 ttacatcaga cgagcagctt gagcgtgctg ctctgcctgc catcgtattg gtgttagtcg
     8641 gtttactgcc tgttatttgg cttaccagat cccttatttc gcaatctgaa aaagaaagat
     8701 aaaggaattt tatgtctgtt ttaactatta atcatctcaa cctcaatttc ggcagtacaa
     8761 aggttttaca aaatctccat cttgctgtga atcaaaatga aattatctgt ttgctaggtg
     8821 caagtggctg tgggaaaact acactgctca aagccattgc aggtttattg ccaattgagc
     8881 agggagatat tcatttagcg ggtgaatgcc taaaaagtaa agccgtggaa gagcgacaaa
     8941 tcgggctgat tttccaagat tacgctcttt ttccacactt gacggtagcc gataatattc
     9001 aatttggctt atccaaattg ccaaaagtac aacaaaaagc aattaccgaa aaaatgcttt
     9061 cagttgtgca tttacaaggc tttgaaagcc gttttccaca cgaactttcg ggcgggcaac
     9121 aacagcgtgt cgctattgcc cgagcattag cctgccagcc agaattgcta ctgttagatg
     9181 agccgttttc caatattgac agccaaactc gctatgcaat gattcaagag atcaagcaaa
     9241 tcttaaaaag ccaaaatgtg cccgctattt ttgtaaccca tagcaaagaa gaagcctttg
     9301 catttgccga taaaattgcc gtgatggatc aagggaaaat tattcaattt ggtaagccaa
     9361 acgagctata ccattctcca gttaatccat ttgtggcaga ttttttaggt ggcacaaact
     9421 atcttaactg taatgtaacg gaagacaacg tgttatgcag ccctattggc gagttccgac
     9481 tcttccctga aatgaacgtt cagaaagggc gttaccgttg gcttcttcgc ccagaacaga
     9541 ttatcttaaa acccaatgag ctaggtttag gtaaagtggt aggcaaactg tttttaggcc
     9601 tatactaccg ctatcaggtt gaaattaaag gcattgagat agtaacttac caatctcaag
     9661 agctgaaaat tggcgaacaa gtggaagtgg gcttccaagt aagagagttt atcctatttt
     9721 aaggagaata tatgaaaatt gaagtttggt cagattatgc ctgcccgttt tgttacatcg
     9781 gcaaacgcca cttagagcaa gccctagccc aatttgaagg cgaggttgaa gtggttttcc
     9841 gagcctttga gcttgatccg cacgctaacg gcgaaccgga gggcgatatt cagcaacgcc
     9901 taatgcggaa atatcaaaaa accgcagaac aagctgatga aatgattcgt tatgtggaac
     9961 aagccggcaa acaagctggg ctagatttgc gttaccgcac cacccaatac actcgcacct
    10021 ttgaagctca tcgcttggcg aaatttgcag aaagtaaaga cttaggcgaa gcaatggttg
    10081 aacgtttatt caaagcctat tttaccgata acactattct agctaaacgc acagagctta
    10141 tcagtttagc cttagacatt ggcttagagc gtgatgaaat cgctcaactg ctcacaggtg
    10201 atgatttcgg gcacgaagtc cgtgaagatg agcgagtcgc tcacaaatat ggcattcaca
    10261 gcgtaccgtt ttttgtgatc aatgaaaaac tcggggtatc cggggctcaa ccgccagaaa
    10321 tattacttga cgctatcaaa caggcattgc aaaaataatc cgaaaaaaga ccgcttgtta
    10381 agctaaacaa gcagtcttat tcttcttata atttacaatt tattttttgg tgatcgcacc
    10441 taaaatacca cgcataattt gtttggtgac ttggttgcgt aaatttctgc caactgaatg
    10501 cgccacttgg ctaaccactt gttcggtaat cgattgatct tttttcttct tcgagccaaa
    10561 aatggaagag agaataccgc caaagaagtc attgtttgct tcttctgccg cagcctgctc
    10621 tgctttaatt gcttctgctt tcgcattaag taattcaaac gcagattcat tatcgacata
    10681 ttggctgtag tgatgataga gatcatcttg cttcactaaa ctatcacgtt cgcctgtggc
    10741 taatggagct aattggcttt ttggtggata gatataggca atttctacag gcgttggcat
    10801 acctttttca tctagcaccg aaaccaacgc ttgccccaca ccaagttgcg tgatggcttc
    10861 taccacattt acctctttat tcgctcggaa agtttccgct gctgatttta ccgctttttg
    10921 atcacgtggc gtgaaagcac gcaaagcgtg ttggatacga ttgccaagct gccctaatac
    10981 tgaatcaggt atgtccaacg gattttgcgt aacaaaataa acacccaccc cttttgagcg
    11041 aattaaacga accacctgtt caattttatc caccaatgcc ttaggggcat cgtcaaacaa
    11101 taaatgagct tcatcaaaga ataaaacaaa cgtcggtttt tctgggtcgc caacttctgg
    11161 caaattctca aagagctctg ccataaacca aagcaggaat gcactgtaca ctcttggtga
    11221 gttaattaat ttttctgcat tcaacatatt gattacacca cgcccattac gggtttggat
    11281 ccaatcgtgc aaatctaatg caggctcacc aaataaatta tctgcccctt cattttcaag
    11341 ccttaataac gcacgctgaa tagctccaac gcttgctgca gaaatatgcc catattccag
    11401 ttggaattct ttcgcattat ctgcgacaaa tttaagcaac gcacgcaaat cttttaaatc
    11461 aattagcaat aaacctctgt catctgccac acgaaaaacg agatttaaca agcctccttg
    11521 ggtatcgttt aaattgagta aacgagaaag taacatcggt cccatttcgg aaatagtgat
    11581 tcgaagtggg atacctgatg taccaaatac gtcccaaaac gaaactggat agccctttaa
    11641 gtaatcttct ccccctaaat taaactgtaa aatgcgttct gcaatttttc ctgaaaaatt
    11701 acccgcttgt accgagcccg aaagatcacc ttttacatct actaaaaata ctggcacgcc
    11761 atcatcactc aaagattctg ccaatttgcg taaagtaacc gttttacctg tacccgtagc
    11821 cccagcaatt aaaccgtgcc gatttgccat tttggcatta agcgaaataa ctttgcctgt
    11881 ttctgttcga gcaatttgat acaaactcat ctttcattct cttaaaggta aattaatttt
    11941 ttgttctcat catataaaaa tttatcactt aattacggct attctttttc gtttttgcca
    12001 agaacgtttt tttacttctt gagcggttca ctttcggtaa agtcagtaag gattccttgt
    12061 cgtattgact cacaggaatc tgatgcccaa tatactcttc aattgcaggc aaattaaccg
    12121 cataacgctc gcaagcaaaa ctaattgaat ggccgctctc ccctgctcgc cccgttctac
    12181 caatacgatg aacgtaatct tctttatcat caggcagatc ataattgaaa acgtgcgtga
    12241 catctggaat atgcaatcca cgagccgcaa catctgttac cactaaaata tccaaattgc
    12301 ctttggtgaa attatccagc aaagaaaggc gttttttctg cggaatatcg ccggttagca
    12361 ttccaacccg atgtccgtct gccgataaat actgccagat ctcttcgcat ttatgcttgg
    12421 tgttggcaaa aatcatacaa cgctccggcc actcttcctc aagcaatgtc agcaacaatg
    12481 ccattttgtc ttcattcgag gggtaaaata gctcttcttt aatacgatgt ccggtttttt
    12541 gtagtggctc aatttcaata tattccgcat tatccatatc ttcataggca agttcccgca
    12601 cttttgccga aagcgttgcc gaaaagagca aagttaaacg ttctgaaggc ttaggtgctt
    12661 ttcgcattaa ataacggata tctttaataa aaccaagatc aaacattcga tctgcttcat
    12721 ctagcacaat cacttgaatt ttgtctaaat tgataatgcc ttgttttaca tagtcaatca
    12781 ctcgacctgt tgtaccgaca agaatatcta cccctttttc aatttcttga acttgtttgt
    12841 cgtaaccatc accaccgtat gccaaagcta gttttaaatc agaatgtttt aaaaacagct
    12901 cggcatctgc cccaatttga accgccaatt cacgggttgg agcaagaatt aatgctctcg
    12961 gctgattttt tgacgtttcg atttcgttat tcaataaatg gttaaaagtt gcaatcaaaa
    13021 aggcaagcgt tttccctgta cctgtttgag cttgccctgc aatatctttg cctttcagcg
    13081 taatcggaaa ggtttttgcc tgaatcggcg tacaaaattc aaagcctttg ctatcaaggg
    13141 catttagtac attagcgtga atcgggaagt caataaagcg gtgttcggta agatgattag
    13201 acatagtatt tccttgataa ttgtgatgtg acaagcggtc ttttttacac atttttttgc
    13261 aaaatagcat attgggcgtt ttttctcaaa tttaaccgct tttgagttta ttcggcaaaa
    13321 tagattggaa aagctctcgg cttttcagcg gttgtgaccc taaatagggc tttagtgcca
    13381 ttcgggtaaa acgtttcgct gcttgttgag tacttttttc tgaaaaatcc aactgagcaa
    13441 acgctaataa atcactgcct aaaaagctct ggttattctg taataatgag gcgataaagc
    13501 cctgattttc ctgaaattga taggtcattt tcggatcaac tggcaaaccg gttgccgcac
    13561 agtgcgtaaa atccacccca taacccaatg cttttaacgt atgaaattca aaggtgcgta
    13621 aaatcggctc aatctgtttt tgtgtggcaa gctcggtaat gcaacgtaaa taatgctgaa
    13681 ataattcagg gtaagcggtc tgattttcca atactcttgc aagtacctcg ttgatataaa
    13741 acccactata aagtgaaagc gtttccatcg gcaacgttaa tgcagccggt tctgctttgg
    13801 ttaaagtttt cagatcccct ttacccgacc aacgcaacaa caacggcgtg aacggctgta
    13861 aaaccgcttt caacggcgag cgagcccgcc ttgcaccttt agcaagtaaa gtaatccgcc
    13921 cgtgatgttc ggtaaaaaac tccactaata aactgttttc gctgtattca cgccgatgaa
    13981 ggacaaaggc tcgttgccat tggtctattg tcataatttc ttgttaatta tgaggttgta
    14041 atttacttct gccaaatctc cccctcccct ctttgctaaa gaggggagat cttgcagagt
    14101 atattttaaa gtcattttca ctatttaacc ttttatatag ataggaagat gaatttaaaa
    14161 tttctggaga actagtcccc ctctttagaa aagaggggtt aggggagatt tgattacgat
    14221 attaatgcta taacgggagc caactactcg tccatatacc ctaaacttct caatgctctt
    14281 tcatcatccg cccaaccagc ttttactttc acccaaagct caaggtgcac ttggttgtca
    14341 aataggcgtt ccatatcttt tcgagcttca atgccgatgg ttttgatttt ttgccccccc
    14401 gcaccaataa ccattttttt ctgaccatct cgttctacta aaatcaagcc attgatttca
    14461 tacaccccac gctcattcat tttaaattgt tcgatttcta ccgttaccga ataaggtaac
    14521 tcttcacctg taaaacgcat tagtttttca cgaataattt ctgatgccat aaagcgttga
    14581 gagcggtctg tcacatactc ttcaggaaag tggtgctcac cttgacgcag tgattgacgg
    14641 acaaatttct gtaaaatatg cacattttta ccccgttgtg ccgaaattgg cagaatttca
    14701 gcaaaatcaa atttttgtga aagctcggta atatgcggca gaagttcttc tttttccttg
    14761 atgttatcaa ttttattgat tgccaataaa acaggggctt ttgccgaacg caatttgttt
    14821 aacaccattt catcatcttc tgtccatttt gtgccttcca caacaaagat gatgagatct
    14881 acatcgccaa tagcagaact tgctgcacgg ttcattaaac gattaatcgc acgtttttct
    14941 tctatgtgta agcctggggt atctacataa atcgcttggt attgatcttc agtgtgaata
    15001 ccaacaatac gatggcgagt cgtttgagct ttgcgtgagg taatggaaat tttttgtcct
    15061 aaaatcttat ttaataatgt tgatttccct acatttgggc gaccaacaat cgcaataaaa
    15121 ccacaatagg tttttgcagg agtttgaatt tgttctgtca ttttgttttc ctttcattct
    15181 gtggaatgaa tttgatggtg caagcgtcca cgcttgtacc atttaattaa atctttagca
    15241 caagcgagga cgcttgcgct atcttacttt ttcgttttaa ccaccgctaa cgctttttct
    15301 gcggcatttt gttcggcttt tcggcggctg gtgccaatgc cgataaacac ttcctcgacg
    15361 ttaatcactt tacaggttac acggaaagtt tggttatgag cttcgccttt aatatctaat
    15421 acatcatatt caggcaatgg caattttcta ccttgtaaaa actcttgcag gcgggttttt
    15481 ggatcttttt gtgaatcgcc tggactgata tctttaagca aatctgaata ccaatcttcc
    15541 accttttcca ttgcttttgc catatcttga tcgagataaa tggccgcaat aatcgcttca
    15601 acacagtccg ataaaatcga ttctcggcga aaaccaccac tttttagctc tcctggacct
    15661 aattttaggt agtcgcctaa atcaaatttg cgagcaataa tcgctagagt ttgctcacgc
    15721 acaagagttg ctctcatacg gctaagctca ccttcattcg cttttggaaa tttgtcgtat
    15781 aatactttac caatagtaaa atttaaaatt gaatcgccta gaaattcaag acgctcattg
    15841 tttttggttg ccgcactgcg gtgtgttaag gcctgaatga ggtaatcaag gttatgaaat
    15901 tgataaccta attttttctg taatcgttct agttgcatag tttatgtgaa taaaggggcg
    15961 tatctcatac gcccctgtta agattaattg attgaggtaa acattctaga aaaacgaagc
    16021 cccgttggga attcatttgc ttttttatct aaacttaacc aaataaaagt ggctttacca
    16081 acgatgtttc tctcaggcac aaagccccag aaacgactgt cttcactgtt atcacggtta
    16141 tcacccatca caaaatagta tccttgtggc acaacccatt caccttctgc ttgcccttct
    16201 tgttggtaga aataaggtgc atagttaaat gccattgggt gatttaaaat ttgatgagtt
    16261 acattacctt tttcagtgcg ttctacctgc atttcaccgt gatagaaaaa ctcaggattt
    16321 ggcttgcctt cgctgtattc aaataccttt gtttcgccat tggctttagt aaccgttaat
    16381 tgctgagttg caaaatcata tttaatttta tcaccaccta ctgccaccac acgcttaata
    16441 taatcaacgt gtggttgtgc cggtgctttg aatacaatca catcgcctcg ttctggtttg
    16501 cccgtttcaa tcaaggtgtt ttgccagata ggatctttaa tgccgtagct gaatttattt
    16561 acgactaaaa aatcgcctac acgcaaggtt ggctccattg aaccacttgg aatttgaaac
    16621 ggttcaaata agaacgagcg aagtactgta acaaagaata aaatgccgaa aagtgaggca
    16681 aaaaattcgc ctactgcgga tttaggttga atttccgcta tttcttcagc ggttaattct
    16741 ctgcctaaac gtttttgttg tagaacaatc gcctgtttac gtcttgggtc agcactgaat
    16801 ttgtaaaacg cccaaaatcc accacaaata ataaccaagg caactaaaat aatggaaata
    16861 gtatttggca gttgcattga atcaagccat tgccaaatac cataaataat acctagaaaa
    16921 ataattggca taaattgtgc cactgaatgc tcctttttat tcaaaattgc aaagttttct
    16981 caaaatatga ccgcttgcaa gcggtcgtat tttacacgaa tattgacaat taatccttac
    17041 ccacatgaag aattgccaaa aatgcttctt gtggcacttc tacgttaccg agagatttca
    17101 ttcgtttttt accctctttt tgtttttgta gcagtttctt cttacgactt acatcaccac
    17161 cgtaacattt tgctaatacg tttttacgca actgttttac cgttgagcga gcaatgacgt
    17221 ggttaccaat tgccgcttga atagcgatgt caaattgttg gcgtggaata agttcacgca
    17281 ttttttccac taattcacgt ccacgatacg ccgcatttgc acggtgaacg ataatcgcca
    17341 acgcatcaac acgctcgccg ttaatcataa tatccacacg caccatatca gccgtttgga
    17401 aacgtttaaa accgtaatcg agtgaagcat aaccacgaga ggttgatttt aagcggtcga
    17461 agaagtctaa cactacttcg cccattggga tttcgtaagt taaggcgatt tggttaccgt
    17521 gatagaccat attggtctgt acgccacgtt tttccacaca aagggtaatc acgttgccta
    17581 ggaattcttg tggcacaagc atattacatt ctgcaatcgg ctcacgaatt tctgcaatat
    17641 tgttgattgc tgggagtttc gatgggctat ccacatagat cgtttcgcca ctggtttgca
    17701 ccacttcgta aactacggtc ggagcggtag taatcaaatc aagatcgtat tcacgctcta
    17761 aacgctcttg aatgatctcc atatgcaaca agcctaagaa gccacaccgg aagccaaagc
    17821 ccaacgcact tgaagtttct ggctcataga acaatgacgc atcatttagg cttaatttgc
    17881 ctaaagcatc acggaaggct tcgtagtcgt ctgaactaat cggaaataac cctgcataaa
    17941 cctgtggttt tactttctta aagcccggta atacttcagt tgctgggttg tggtggtggg
    18001 ttaatgtatc gcccactggt gcccctaaaa tatctttaat cgcacaaact acccaaccta
    18061 cttcacctgt ttttagctcg gtagtatcca cttgttttgg cgtgaaaata ccaaggcgat
    18121 ctacattgta agactgccct gtactcatca ctttaatttt atcgcctttt ttcagcacgc
    18181 catttttcac acgcactaaa gacacaacgc ctaaatagtt atcgaaccaa gagtcgataa
    18241 ttaacgcttg taatggtgct tccgcatcgc cttctggtgc aggcattttc ttcacgattt
    18301 cttctaaaac atcttcaatg cctaaacctg ttttagctga acagcgtact gcatcaatgg
    18361 catcaatgcc gacaatatct tcaatctctt ctgccacacg ctcaggctcg gctgctggta
    18421 aatcgatttt atttaaaatt ggcacaacct ctaaatctat ctcaattgcg gtataacaat
    18481 tcgccaacgt ctgtgcttcc accccctgcc ctgcatcaac cactaataaa gcaccttcac
    18541 aagcagcaag cgagcgagaa acttcatatg agaaatccac gtgccctggc gtatcaataa
    18601 agttgagctg ataaatttcg ccatctttcg ctttatagtt taaggttaca ctttgtgctt
    18661 taatagtaat tccacgctca cgctcaagat ccattgaatc taatacttga gcctccattt
    18721 cacgatctga taagccacca caagtttgaa ttaagcggtc tgataaagtc gatttgccgt
    18781 gatcgatatg agcgataatc gaaaagttac gaatattttg cattttcatc gggcagttaa
    18841 tgtcctgttt tgttatttgt ttatcaaaaa ttaatcgggg aattgtactt gaaatacaag
    18901 gttttgcaaa gaaaacaaat agcaataagc ggttattttt tcctaaaaat gtgcaaattt
    18961 cttgagaaaa atgaccgctt gcactcaccc taattgcaaa taatttctct
//
LOCUS       DANMBQ010000036        18547 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.036, whole genome shotgun sequence.
ACCESSION   DANMBQ010000036 DANMBQ010000000
VERSION     DANMBQ010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18547
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.036"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            93..833
                     /locus_tag="PXE92_001090"
                     /pseudo
     CDS             93..833
                     /locus_tag="PXE92_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014065477.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
     gene            833..1633
                     /locus_tag="PXE92_001091"
     CDS             833..1633
                     /locus_tag="PXE92_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5760353.1"
                     /translation="MKFSVLMSLYIKEQPQYLRECFESLKVQTVQADEIVVCFDGAVT
                     PELEAIVEEYSAILPINAVKFPQNRGLGKTLNDGLTYCKNEWVFRMDTDDICMPERFE
                     KQVAFIEQNPETVIFGGQIAEFGQDIHDLVAYRNVPTTVEEIVRFTRLRCPFNHMTVA
                     YQKSKVLEVGGYQDLQEDYYLWIKLIAQFKQVANLPDLLVYARVGNGMVGRRRGMAQA
                     EAEWRLYKLKNRCQIHDPISGFGIFIMRAIPRLLPVSALKKVYGLLRK"
     gene            complement(1670..2176)
                     /gene="msrA"
                     /locus_tag="PXE92_001092"
     CDS             complement(1670..2176)
                     /gene="msrA"
                     /locus_tag="PXE92_001092"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL5760354.1"
                     /translation="MQNIREIYLAGGCFWGVESFMQRIKGVIKAQSGYANGNTDNPSY
                     QEVCAGSGHAEVVKVTYDANQISLAKLLDYFFKVIDPVSINKQGGDIGIQYRTGIYYT
                     DPQDEPVVTAALAQLQTQFDQPLAVENQMLEQYFPAEEYHQEYLVKNPNGYCHIDIQL
                     MNEILKNQ"
     gene            2357..3619
                     /locus_tag="PXE92_001093"
     CDS             2357..3619
                     /locus_tag="PXE92_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDL5760355.1"
                     /translation="MGTLNSFLGIIVLLFIAFLFSSNKRAINVRTVLGALALQVAIGA
                     LVLYVPAGRDALNAMATGVSKVISYGNEGISFLFGGLVSDKMFEVFGGGGFVFAFRVL
                     PVIIFFSALISLLYYIGVMQWVIRILGGLLQKALGTSKAESMSAAANIFVGQTEAPLV
                     VKPYISKMTESELFAIMAGGLASIAGSVMAGYAGMGVPLTYLIAASFMAAPAGLLFAK
                     IMVPQTEKFRDELEAVDLEKPANILDAAASGASSGMQLALNVGAMLIAFVALIALVNG
                     ILGGIGGWFGYDTLNLGQIFGWVFKPLAWVIGVPWEEAEIAGQMIGLKLAVNEFVGYL
                     EFAKYLAPESTVHLTDKTVAIITFALCGFANFSSIAILIGGIGAMAPSRRGDIARLGI
                     KAVIAGSLANLMSATIAGLFIGLGGAVL"
     gene            3764..4540
                     /gene="deoC"
                     /locus_tag="PXE92_001094"
     CDS             3764..4540
                     /gene="deoC"
                     /locus_tag="PXE92_001094"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HDL5760356.1"
                     /translation="MNLKKSAEIALSLMDLTTLNDNDTDEKVIALCQQANTKFGTPAA
                     ICIYPRFIPIARKALKQQGIEQVKIATVTNFPHGNDDIEIAVAETKAAVAYGADEVDV
                     VFPYKALIAGNEQIGFDLVKQCKAVCAANNVLLKVIIETGELKSAELIRKASEISIQA
                     GADFIKTSTGKVAVNATLESARIMLETIRDLGVADRVGFKAAGGVKTSEEAAQYLALA
                     ESILGNDWVSASHFRFGASSLLANLLATLNDEQQQAVQGY"
     gene            4561..5280
                     /gene="deoD"
                     /locus_tag="PXE92_001095"
     CDS             4561..5280
                     /gene="deoD"
                     /locus_tag="PXE92_001095"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDL5760357.1"
                     /translation="MATPHINAPEGAFADVVIMPGDPLRAKYIAETFLEDAKEVTNVR
                     NMLGYTGTYKGRRISVMGHGMGIPSCSIYAKELITEYGVKKIIRVGSCGAVRNDVKVR
                     DIVIGVGACTDSKVNRIRFRDNDFAAIADFDMTLAAHQAAKAKGIEARFGNLFSADLF
                     YSPDVEMFDVMEKYGILGVEMEAAGIYAVAAEYGAKALAICTVSDHIRTGEQTTSEER
                     QLTFNGMIEIALESVLIGDKQ"
     gene            complement(5356..6207)
                     /locus_tag="PXE92_001096"
     CDS             complement(5356..6207)
                     /locus_tag="PXE92_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HDL5760358.1"
                     /translation="MQTHRAIIESIFALAPKNELWATPISGLTVHAADRSIRFNGYIQ
                     DPSLCVVLLGERQICTNGHCQVFGNQEMMFCPVNLPIVTQTLSVAENQPYLAISLRLD
                     FDLIAKIITQLPPQKISENINQRTKWELENEIKDCLLRLLNLLNSPNHIHFLAPLILN
                     ELYFYLLQSEQGGYIRSLLSQDGNIAKIANATKILERKFADTLNMSALAEEVGMSVAG
                     FYAHFKSVTSMTPLQYQKSLRLNAAREKLQAGVSVSETAYQVGYESPSQFSREYKRQF
                     GESPKGR"
     gene            6322..6753
                     /locus_tag="PXE92_001097"
     CDS             6322..6753
                     /locus_tag="PXE92_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HDL5760359.1"
                     /translation="MKIFYHTSATATGGRDGRTQVDDGSIGFDLVGFQNESGKVGTNP
                     EQLFAMGYAACFDSAMNHVAPTLGIKPTKSSTTVAVGIGQKADGAFGLDLDITITVEG
                     ISAEEAKTLISKAHEVCPYSNATRGNVDVRLHVKVVSEFDL"
     gene            6770..7450
                     /locus_tag="PXE92_001098"
     CDS             6770..7450
                     /locus_tag="PXE92_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HDL5760360.1"
                     /translation="MKMLDFETTVKTRQSIRKFLPLPMTETEIKQILADAQNAPSACN
                     TQPWLVHVASGETLARLKARFKKTFEAGINDADFEFNQTKFTGDYEPRWRNQYSHVFT
                     TSYGIPREDKAGRQVVYDDNIVGYGAPHMAFLFMPSIDGHDVNIASDVGMYSQTFLLS
                     LTARGFGGIPQLALAMFAKDVREELGIPEHYKLLHAISFGHPDWDAMQNKHHLGRVPV
                     EESATLHW"
     gene            7514..8638
                     /locus_tag="PXE92_001099"
     CDS             7514..8638
                     /locus_tag="PXE92_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent flavin oxidoreductase"
                     /protein_id="HDL5760361.1"
                     /translation="MINLFTPYTLNNDVEIKNRLVVAPMTHSASNDDGTISEQERHFL
                     HNRAADMGLFITAATGVMRNGKAFYGQPEALDERYLASLTETANILKNQGTKAILQIF
                     HGGAQAIPALLDGANAVAPSEHANGAKALTADEVKQMIQAFANATDLAIQAGFDGVEI
                     HGANGYLIQQFFSTEFNQRTDEWGGSLEKRLRFPLAVVEAAVSVREKHQRPDFIIGYR
                     FSPEEPGEHGLTMTDTYALIDALCEKPLQYLHISLWDFGKKARRGADTNFTRMQLVHQ
                     HINGRLPLIGVGNLLTGEQIRKAYATGWAEFIALGKAVMLNPNVATLLKDNRDSEIVS
                     ELDPQQADHYGIPDRLWGYCVQGGAWLPPLKGQNGQPMDI"
     gene            8722..9339
                     /locus_tag="PXE92_001100"
     CDS             8722..9339
                     /locus_tag="PXE92_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HDL5760362.1"
                     /translation="MITLHYLNSSCSHRIVWLLEALGLDYELKIYHREESGFAPMEVK
                     ALHPLGKAPVLQDGDLVLAEGNAIIQHLIARYAEGKFEPTRGSEAYSMYHYWLSISAS
                     LFSANLVTMLANRSDLGAFGDYAKAQTPLYFNHIEQTLSDKKWIVGDELTGADFSLCF
                     PLQWGRNFVEMANYPNIARYLEQVENHPAYQKANQKALKLDMNRF"
     gene            9482..10423
                     /gene="argC"
                     /locus_tag="PXE92_001101"
     CDS             9482..10423
                     /gene="argC"
                     /locus_tag="PXE92_001101"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDL5760363.1"
                     /translation="MSKYKIFVDGAVGTTGLRIHERLSQADDIELLTLPEEQRKDLNA
                     RVAKVAEADLTFLCLPDEASKELVANAPENTRICDTSTAHRVNPNWVYGFPELSGQRE
                     KIQNAKRVAVPGCHATGYIALVRPLVEKGILPADYPLSCHSLTGYSGGGKAMIADYEN
                     ENSPNAFNAPRVYGLTLQHKHLPEMQAVTQMQNPPIFTPVVADYYSGMLVTVPLQIFA
                     LQAVKSGEEIANLLADYYQTSRLIHVHPFQSLPEDGMLAANAYAGKDSLEIFIYGNST
                     QLLLAARFDNLGKGASGAAVQCMNIMLGRDEVEGLEL"
     gene            10515..11369
                     /gene="argB"
                     /locus_tag="PXE92_001102"
     CDS             10515..11369
                     /gene="argB"
                     /locus_tag="PXE92_001102"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDL5760364.1"
                     /translation="MQQQEINQFANLLEKSTACLVKWQGKIIVVKYGGNAMINEELKK
                     SVMADLLLLHRLGVKVVLVHGGGLEISQGVKLLGKEPQFINGLRVTDSDTINVVLQML
                     AGKVNKSLVALLKGKGIGLCGIDGAMLQCKKLEAEVDYGFVGDIVKVDPTVIEIALNA
                     GLIPVVSTVGVDENGQAYNINADTAASEIAIALQAEKLVSMTDIAGLLRDRFDESTLI
                     PEVEVSEVQSLIEQGIIAGGMIPKIACCTDFIRAGGSEANIIDGRIDHAILVEMFGGK
                     NGTRFYKK"
     gene            11382..12566
                     /locus_tag="PXE92_001103"
     CDS             11382..12566
                     /locus_tag="PXE92_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDL5760365.1"
                     /translation="MTSSNTIKQLDKDYIAQTYGRFDLALSHGKGCEVWDFEGNKYLD
                     FTSGIGVNSLGWADEDWLQAVTTQAGKLAHTSNLFFTEPASQLAQKLVAASGLKRAFF
                     CNSGAEANEGAIKTARKYSFDKYGSGRSTVLTLVNSFHGRTISTLASTGQEVFHKHFF
                     PFTEGFEYLPVNGIEALKARLETENVCGILLEVVQGEGGVCPLEADYLHAVQSLCQEK
                     DILFMIDEVQTGIGRTGTLFAYQQFDLTPGLVTLAKGLGGGLPIGAFLLGEKVEMTLG
                     KSDHGSTFGGNPVSCAAANVVIDKINAEFLAQVQQKGQLLQQRLASLPKVKSVSGLGL
                     MLGVEFEEGILAADIVAKCINKGVLFLTAKSKLRLLPPLMISEQQIEQGIRVLEDVLK
                     DS"
     gene            12749..13180
                     /locus_tag="PXE92_001104"
     CDS             12749..13180
                     /locus_tag="PXE92_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5760366.1"
                     /translation="MSNQIALLLMSHGSFARAALASAELIVGQQENVAAIGVVAVDNV
                     ADIKRQMEQTIAELNTDKGLIILTDIVGGTPMNLASSQLTHPNVFACSGLNLPLLLEV
                     LMSRDGNLQEIRENLPLAYQNGFSLRTQQDFVSQEDDDDLL"
     gene            13167..13634
                     /locus_tag="PXE92_001105"
     CDS             13167..13634
                     /locus_tag="PXE92_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5760367.1"
                     /translation="MICFSRIDDRLIHGQVVTTWVNLHRIEQIIVLNDAVAADPTQKQ
                     ILTMAAPQGIKVVAFGIEKFGEVLQKTQITRRTMLLFTNSIDVLRTVELGVSIDKLNV
                     GGMRYQARREQLSKAVSVTPEERQAFKTLLEKGVEVTVQMVPNDEKLNLQEII"
     gene            13637..14404
                     /locus_tag="PXE92_001106"
     CDS             13637..14404
                     /locus_tag="PXE92_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL5760368.1"
                     /translation="MLTALLVACWAGICALDDIGTQMIRRPLLIAPVVGLIMGDLETA
                     LIIGATLEVMWMGIGNVGAYSAPDMISGTAIGTALGIAAGEASTAVALAVPTSLLAQQ
                     LLILYRSGVCALNPIAERWAASGDFDKIFRIHYIPMLIAFSIRAIPTFLAVYYGADII
                     AQAVSALPAKVITGLNVAGKIIPAIGIGLLMLMMIKKAELWTFLIAGFTLAVYLKLSV
                     LPITLIALPLALIYDLAVSKKAEAAPTKTADEEDYDL"
     gene            14401..15207
                     /locus_tag="PXE92_001107"
     CDS             14401..15207
                     /locus_tag="PXE92_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HDL5760369.1"
                     /translation="MSNKITKQDLNKVFWRMQVLNVTNNFQSMQAIGFLSSFIPVLKR
                     LYKDRPQEERAEAMKRHLKFFNSHVNSDALILGIAAAVEETTKEDEKETVTAIKTGLM
                     GPLAGLGDSLLKFTWLPICGSIGAALALSGNVLGPILMFLLYNSVNIATKYYGIHLGY
                     SKGVDLIHGAGNNILQRLGNMANVVGLMVIGALIASVVKVKVVSQIAAGDNVIKFQEM
                     LDKVMPGLLSLLLTVVIYWILKKTNGKYAATMILATMGICIGLVYAGILG"
     gene            15207..16244
                     /locus_tag="PXE92_001108"
     CDS             15207..16244
                     /locus_tag="PXE92_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HDL5760370.1"
                     /translation="MDSVYDIIRLEQGRYLFRQQPAQSVQIFFLDNPDSKDSKWLAET
                     DLAEFELKLSACEARPFFLIQSANGEQIVAERTLPVAGMNNFRDMGGYVAHQGKRVKW
                     GKLYRSDHLHNLRDEGVAYLDKLGIQTVIDYRSPNEVAKYPNPPINGREQTFRLDPNA
                     HTAELAAQFSADKHDEDRNLVNKIIAQKAEGNLINRYDIVMAQYRNFVEKAECQTAFA
                     EMLRLATDPENAPLVQHCRGGKDRTGFGAMLLLGILGVSKADIIADYMLTHYNRLARN
                     EEKMAIYRTFTQDQDVLDYLLSLIDTQPEFIEQSLNTIETQYGTIEQYAQRVLGITAK
                     EIEALRANYLA"
     gene            16334..17554
                     /gene="agp"
                     /locus_tag="PXE92_001109"
                     /pseudo
     CDS             16334..17554
                     /gene="agp"
                     /locus_tag="PXE92_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005628146.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glucose-1-phosphatase/inositol
                     phosphatase"
     gene            17862..>18547
                     /locus_tag="PXE92_001110"
     CDS             17862..>18547
                     /locus_tag="PXE92_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5760371.1"
                     /translation="MSQDIQADLKKILALLSRNRRFQSLFLLLLRSEQFINSDALSTE
                     LQLSVRTVKKEIKLLKEKLEPYGIQIFSRPFYGYKLLIQFEELHTQLKQYFQISQPMT
                     VNNKFESRVNAILRRLLVSQRALKVEDFQSELYLSFTSALTKEFSQVKALLGKYGLIL
                     EAKPYHGMNIVGESYRKIMLTVRLYKYFTQLEHPFGIKEFEQCFACPMTEKIRERLAK
                     TIIHFNLVFS"
BASE COUNT         5455 a         3558 c         4162 g         5372 t
ORIGIN      
        1 aaactttagg aattttaaat gaatttaacg atatttctac taaagaaaaa gtaagagaat
       61 tacttactag agatagttta tctcatattt atagctatcc atttgatgtg aaagtggtgc
      121 gaaataaccc aaatgttggg gcggcacaaa gccgaaatgt aggggcaact aatgccacac
      181 aagaatggct actgttttta gatgatgatg accgctttat gcctgaaaaa tgcgaacgtt
      241 tagcggcaga gattgcgaac aatccaactg ccaattttgt gtaccacccg gcaaaatgtg
      301 aaatggtaaa tgagggtttt acttatgtca ccaagccgtt taaacataaa agtgagctaa
      361 ctaaagaaaa cattctaaaa gcgaataaaa ttggcggaat gccgatgatt ggcttgaaaa
      421 aatcactctt ttgtaaaatt ggtggattat ctgaccgctt gcgatcactt gaagattatg
      481 atttcttact gaaattattg gaagaaccga gttttgagcc attgtatgtg gacgaagcct
      541 tgacctattg tactttccat accaaacgct ccagtgtttc aaccgatacc actaatacag
      601 aaaaggctat tgagtatatt caacaaacgt atatcaaaac acctgaggcg aataatttta
      661 agctcaattc gctttatatt ttaagttatc cacacgtaat gaatttatcc cgcaaggcag
      721 ccggttatta ttttgagatg tttaaacaga ctaaaaatat caaacaactg attattgcgt
      781 tggttatttt tatttcgccg aagttggcga ttaatttgaa aaggtttatg taatgaaatt
      841 ttccgtttta atgtcgttat acattaaaga gcaaccgcaa tatttaagag aatgttttga
      901 aagcttgaaa gtacaaactg tgcaggctga tgaaatcgtt gtttgttttg atggtgcagt
      961 tacgcctgaa ttagaggcga ttgtagaaga atatagtgca attttgccga ttaatgcggt
     1021 gaaattccca caaaatcgag gtttaggtaa aacgctaaat gatgggctaa cctattgtaa
     1081 gaatgaatgg gttttcagaa tggatacaga cgatatttgt atgccggaac gtttcgagaa
     1141 acaagtggca tttattgaac agaatcctga aaccgtgatt tttggcggcc aaattgctga
     1201 atttgggcaa gatattcacg atcttgtcgc ttaccgcaat gtaccaacca cggtggagga
     1261 aatcgtcaga ttcactcgct tgcgttgccc gtttaaccat atgacggttg cttatcagaa
     1321 atccaaagtg ttggaagtcg gtggctatca agatctgcaa gaagattact atttatggat
     1381 caaactcatt gctcaattta aacaagtggc aaacttgccg gatttattag tgtatgcccg
     1441 agtcggtaac ggaatggttg gcagacgccg tggaatggcc caagcagagg cagaatggcg
     1501 tttatataaa ttaaaaaacc gctgccagat tcacgatccg atttcaggtt ttgggatttt
     1561 cataatgcgt gcaattcctc gtttattacc ggtttcagca ctgaaaaaag tgtacggttt
     1621 gctcagaaaa taaagctaaa aaaaccacag attgctctgt ggttttttgt tattgattct
     1681 tcaaaatctc attcattaat tgaatatcaa tatggcagta gccgttcggg ttttttacta
     1741 aatattcttg gtggtactct tcggcaggga aatattgctc taacatttgg ttttccactg
     1801 ccagcggctg atcaaattgg gtttgtaatt gtgcaagtgc ggcggttacc accggttcgt
     1861 cttgtgggtc ggtataataa ataccggtgc ggtattgaat accgatgtcg ccaccttgtt
     1921 tgttaatgct caccgggtct attactttaa agaagtaatc tagtaatttt gccaagctaa
     1981 tttgattggc atcataagtc acttttacca cttcagcgtg tccgctaccg gcacacacct
     2041 cttgatagct tgggttatcg gtattaccgt tggcatagcc tgattgtgcc ttaatgacac
     2101 ctttaatccg ttgcataaaa gattccacgc cccagaaaca gccaccggct aagtaaattt
     2161 cacgaatatt ttgcatatta cctctctata attgtaaatt tttcgataaa tttgactgct
     2221 tgtgatgaat aataaaatac cataatttag tttttgtcaa attttgtctt gaatgatgat
     2281 aatttcacaa gattttttgc ctaaaaatag gtatagtatc gtcacctttt ttaatcaatt
     2341 tataattaga ggttctatgg gtactcttaa cagcttttta ggcattattg ttttactatt
     2401 cattgcattt ttattttcga gcaataaacg tgcaataaac gtgcgtaccg tattaggcgc
     2461 attagcattg caggtagcta ttggtgcatt ggtgctttat gtgccggcag ggcgtgatgc
     2521 cttgaatgcg atggcaacag gtgtgtcaaa agtgatttct tacggtaatg aagggatttc
     2581 atttttattc ggtggcttag tcagcgacaa aatgtttgaa gtatttggcg gcggcggctt
     2641 tgtgttcgct ttccgtgtac ttccggtgat tattttcttc tctgcactca tttctttgct
     2701 ttactacatt ggagtgatgc aatgggtaat ccgtatttta ggtggtttat tacaaaaagc
     2761 attaggtaca tctaaagcgg aatctatgtc tgcggcagct aatattttcg ttggccaaac
     2821 tgaagctcca ttggtagtaa aaccttatat cagcaaaatg acagaatctg aactctttgc
     2881 gattatggca gggggcttag cttctattgc aggttctgtt atggctggtt acgcaggaat
     2941 gggcgtacca ttaacgtact taatcgcagc ctcctttatg gcggctccgg cagggttatt
     3001 attcgccaaa attatggtgc cacaaaccga aaaattccgt gatgaactag aagcggtaga
     3061 tttagaaaaa ccggcaaata ttcttgatgc agcagcttca ggtgcttctt caggtatgca
     3121 actggcatta aacgtagggg caatgttaat tgcattcgtg gcgttaattg cattagtgaa
     3181 tggtatttta ggaggtattg gcggctggtt cggttatgat accttaaact taggtcaaat
     3241 tttcggctgg gtatttaaac cgcttgcgtg ggtaatcggt gtgccttggg aagaagcaga
     3301 aattgcgggg cagatgatcg gcttaaaatt agcggtaaat gaattcgtgg gttatttaga
     3361 gtttgctaaa tacttagctc ctgagtcaac cgtacattta acggataaaa ctgttgcgat
     3421 tattaccttt gcactttgtg gctttgcgaa cttcagctcg attgcgattt taatcggtgg
     3481 tatcggggca atggctccaa gccgtcgtgg tgatattgcc cgacttggga ttaaagccgt
     3541 cattgctggc tcacttgcca acttaatgag tgcaaccatt gccggcttgt ttatcggctt
     3601 gggtggagca gttctctaat ccagtttgta taaaaccact agaaatagtg gttttatctt
     3661 tttttatctg acgtaaacgg ttgcttttgg tttgtctatt tacaagcggt cagattttta
     3721 taaaatttta ccaaccacca cgcatttaat aaaaggagac actatgaatt taaaaaaatc
     3781 cgctgagatt gctctttcgt tgatggatct caccacatta aatgacaatg atactgatga
     3841 gaaagtcatc gcattatgcc aacaagcgaa caccaagttt ggcacaccgg cagcaatttg
     3901 catttatcca cgttttatcc cgattgcccg caaagcattg aaacagcaag gtatcgagca
     3961 agtaaaaatt gcgacagtca cgaatttccc tcacggtaat gatgatattg aaattgcggt
     4021 agctgagacc aaagccgcag ttgcttatgg ggcagatgag gtagatgtgg tattccctta
     4081 taaagcatta attgcaggta atgagcaaat aggtttcgac ttggtaaaac aatgcaaagc
     4141 agtttgtgct gccaataatg tgttgcttaa agtgattatt gaaaccggcg agttaaaatc
     4201 agcagagctt attcgcaaag caagcgaaat ttcgattcaa gcaggggctg attttattaa
     4261 aacctcaacc ggcaaggtgg cagtgaatgc tacccttgaa tctgcccgca ttatgcttga
     4321 aaccattcgt gatttaggtg tggcagaccg tgttggcttt aaagctgcag gtggggtaaa
     4381 aacctcggaa gaagccgccc aatatcttgc acttgcggaa tctattttag gcaatgactg
     4441 ggtgagtgca tcacattttc gcttcggtgc atcaagttta ttagctaatt tattagcaac
     4501 attgaatgat gaacagcagc aagctgttca aggttattaa ttaataaaga ggaacataaa
     4561 atggctactc cacacattaa cgcacctgaa ggtgctttcg ctgacgttgt aattatgccg
     4621 ggcgatccgc ttcgtgctaa atatatcgct gaaacctttt tagaagatgc aaaagaagtg
     4681 accaatgttc gcaatatgtt aggctacacc ggcacttata aaggtcgccg catttcagta
     4741 atggggcacg gtatggggat tccatcttgc tcgatttacg ctaaagaatt aattactgaa
     4801 tatggcgtga agaaaattat ccgtgtcggc tcgtgcggtg cggtacgtaa tgatgtcaaa
     4861 gtgcgtgata ttgtcatcgg tgttggggct tgtaccgatt ctaaagtaaa ccgtattcgc
     4921 ttccgtgata acgattttgc ggcgattgct gattttgata tgacattagc tgctcaccaa
     4981 gcagctaaag cgaaaggcat tgaagctcgt ttcggtaatt tattctcagc cgatttattc
     5041 tactcacctg atgtcgaaat gtttgatgta atggaaaaat acggcatttt aggcgtagaa
     5101 atggaagcag caggcattta tgcggtagcg gcagagtatg gagcaaaagc attagcaatt
     5161 tgcaccgttt cagaccatat ccgcaccggt gagcaaacta cctctgaaga acgtcaatta
     5221 acctttaatg gtatgattga aattgcgtta gagtcagtat taattggcga taagcagtaa
     5281 tttctaacct gacaagcggt gaaattttgc aaaaaatttg cagaatttga ccgcttgtta
     5341 tttttgattc ttcctttatc ttcctttcgg gctttcgcca aactgccttt tatattctcg
     5401 actaaactgg cttgggcttt catagccgac ttgataggcg gtttcactca cgcttactcc
     5461 tgcttgtagt ttttcccttg ccgcatttag tcttaacgat ttctgatatt gcagtggtgt
     5521 cattgaagtt acgcttttaa aatgagcgta aaaccccgcc acgctcattc ctacctcttc
     5581 agccagtgct gacatattta gtgtatcggc aaattttctt tctaagattt ttgttgcatt
     5641 ggcaatttta gcaatattgc catcttgaga gagtagagag cgtatatagc caccttgctc
     5701 agattgtaat aaatagaaat agagttcgtt taatatcaat ggtgcaagaa aatgaatatg
     5761 atttggagaa ttaagcaaat ttagtaagcg taacaaacag tctttaattt cattctccag
     5821 ctcccattta gtgcgttgat taatgttttc acttattttc tgtgggggaa gctgcgtgat
     5881 aattttggca ataagatcaa aatccaagcg tagtgaaatc gcaagataag gctgattttc
     5941 tgcaactgat aaggtttggg taacaatcgg caaattcaca gggcaaaaca tcatttcctg
     6001 attaccgaag acttggcaat gtccattggt acagatttgc cgctcgccta ataatactac
     6061 acataaactt gggtcttgga tataaccgtt aaatctaata gaacgatcgg cagcgtgaac
     6121 ggttagccct gaaatgggag tagcccaaag ttcatttttc ggagcgaggg caaaaataga
     6181 ttcaataata gctcgatgag tttgcataat aatctcactt ttagaaaatt aggcatattt
     6241 tatagaaaat caggcaagac gacaaatagc aaaaagcgga taatatcccc aatcaaataa
     6301 agcatttaat aggagcaaaa tatgaaaatt ttttatcaca catcagcaac tgcaaccggt
     6361 ggtcgtgacg gcagaaccca agtggatgac ggttctatcg gttttgattt agtcggtttc
     6421 caaaatgaaa gtggcaaagt aggcactaat ccggaacaat tattcgcaat gggctatgct
     6481 gcctgctttg acagtgcaat gaatcacgtt gccccaacct taggcattaa gccaaccaaa
     6541 tccagtacca ctgttgcagt tgggattggt caaaaagctg atggtgcttt cggcttagat
     6601 ttagatatta ccattactgt ggaaggcatt agtgcggaag aagcgaaaac tttaattagc
     6661 aaggcacacg aagtttgccc atattcaaat gcaacccgtg gtaatgtaga tgtgcgttta
     6721 cacgttaaag tcgtgagtga atttgactta taaaaaataa ataggggaaa tgaaaatgtt
     6781 agattttgaa accacggtaa aaacacgaca atcaatccgc aagtttttac cgcttccgat
     6841 gacggaaact gaaatcaaac aaattcttgc cgatgcacaa aatgcccctt cggcttgtaa
     6901 tacacagccg tggttagtac acgttgcctc tggtgaaacg ctagcacgct taaaagctcg
     6961 ttttaaaaag acttttgaag cgggcattaa tgatgcggat tttgagttca atcaaacgaa
     7021 atttaccggt gactacgaac cacgttggcg taaccaatac agccacgttt ttaccaccag
     7081 ctatggcatt ccccgtgaag ataaagccgg tcgccaagtg gtgtatgatg acaatattgt
     7141 cggttatggt gcgccacata tggcattcct atttatgcca agcattgacg gacacgatgt
     7201 caatattgcc agcgatgttg gtatgtattc gcaaactttc ttgctctcac tcaccgctcg
     7261 tggttttggc ggcattccgc agcttgccct tgcgatgttt gctaaagatg tgcgtgaaga
     7321 gttaggcatt cctgaacatt acaagctcct ccacgccatt tctttcggac acccagattg
     7381 ggacgctatg cagaacaaac accatttagg gcgtgtgccg gtggaagaga gtgcgacctt
     7441 acattggtaa taaacaagcg gttgattttt cgcaaaaatt tgcgaaatca accgtatttt
     7501 ttaggagaat acgatgataa atttatttac cccttatact ctgaataacg atgtagaaat
     7561 taaaaaccgc cttgtagttg ccccaatgac ccattccgcc tccaacgatg acggcacaat
     7621 tagcgagcaa gaacgccatt tcttgcataa tcgtgcagca gatatgggct tatttatcac
     7681 cgcagcaacc ggggtaatgc gtaacggcaa agcgttttac ggtcagccgg aagctcttga
     7741 tgaacgctat ttggcaagcc tgacagaaac tgccaatatc ttgaaaaatc aaggcaccaa
     7801 agcgattttg caaattttcc acggtggggc acaagctatt cctgccttgc ttgacggggc
     7861 gaatgcagtt gcgccgtccg agcacgccaa cggtgctaaa gccctaacgg cggacgaagt
     7921 gaagcaaatg atccaagctt tcgctaatgc caccgattta gctattcaag ccggttttga
     7981 tggtgtggaa attcacgggg cgaacggcta tttaattcaa caatttttct ctactgaatt
     8041 taatcaacgc actgatgaat ggggcggtag ccttgaaaaa cgcttgcgtt tcccgttagc
     8101 ggtggttgag gcagcggtca gcgtgcgtga aaaacaccaa cgccctgatt ttattatcgg
     8161 ctaccgtttc tcaccggaag agccgggcga acacggctta accatgaccg atacctacgc
     8221 cctgattgat gctttgtgcg aaaagccgtt gcaatacttg cacatttcac tctgggattt
     8281 cggcaaaaaa gcccgccgtg gtgcagatac caacttcacc cgtatgcaac tggtacacca
     8341 acacatcaac gggcgtttac cgctgatcgg cgtgggtaac ttattaaccg gtgaacagat
     8401 ccgtaaagct tatgcaacag gctgggcaga atttatcgcc ttaggtaaag cggtaatgct
     8461 caacccgaac gtggcgacct tgttgaaaga taatcgagac agtgagattg tcagcgaact
     8521 cgacccgcaa caagccgacc actacggcat tcccgataga ctatggggct actgcgtgca
     8581 aggtggtgct tggttaccgc cgcttaaagg gcaaaacggg caaccaatgg atatttaatc
     8641 attacagaca agcggtcatt tttttgtaaa aatttgcaat taagtgaccg cattttttca
     8701 attatctgaa ggagaaaaat tatgattacg ttacattacc tgaacagttc ctgctctcac
     8761 cgcatcgttt ggttgttgga agccttaggc ttggattacg agctaaaaat ctaccatcgt
     8821 gaagagagcg gttttgcacc tatggaggta aaagccttgc acccacttgg caaagcccct
     8881 gtgttgcaag atggcgattt ggtgcttgcc gaaggcaatg cgattatcca gcatctgatt
     8941 gcccgttacg ccgaagggaa atttgagccg actcgtggta gcgaagccta ttcaatgtat
     9001 cactactggt tgtcgatttc tgcttcatta ttctcggcaa accttgtgac aatgttggct
     9061 aatcgctctg atctcggagc ttttggcgac tacgcaaaag cgcagactcc gctgtatttt
     9121 aaccatattg agcaaacact ttcagataaa aaatggattg tgggtgatga actaaccggt
     9181 gcggattttt ctctctgttt cccactacaa tgggggcgta attttgttga aatggcaaat
     9241 tacccgaata ttgcacgcta tttagaacag gtggaaaatc accctgctta ccaaaaagcg
     9301 aatcaaaaag ccctgaagct tgatatgaat agattttaat actcttttta atccctaaca
     9361 ttttgttagg gatttttgaa tataaaatca attaatgtga ataattattc aaaaataaac
     9421 ttgagtttag ccttaaatag ccttagacta ccgagcagaa aaagtcaaag aaggattttc
     9481 aatgagcaaa tacaagattt ttgttgatgg ggcagtagga acaaccgggc tacgcattca
     9541 cgaacgttta agccaagcgg acgatattga attattaacc ttgcccgaag agcagcggaa
     9601 agatttgaac gcccgtgtgg caaaagtcgc agaggcggat ttaactttcc tctgtttgcc
     9661 ggatgaagcc tcaaaagaat tagtagcaaa tgcaccggaa aatacccgaa tttgcgatac
     9721 ttcaaccgct catcgggtca atcctaattg ggtttatggt tttccggaat tgagcggaca
     9781 acgtgaaaaa atccaaaatg ccaagcgtgt tgcggtgccg ggttgccatg ccacgggcta
     9841 tattgcgttg gttcgtccac tggtggaaaa agggattctg cccgccgatt accctttaag
     9901 ttgtcattcc ttaaccggct attcaggcgg tggcaaagcg atgattgctg actatgaaaa
     9961 tgaaaacagc ccaaatgctt tcaatgcccc tcgtgtttac ggtttaactc tccaacacaa
    10021 acatttgcct gaaatgcagg cagttaccca aatgcaaaac ccaccgattt tcacccctgt
    10081 ggttgctgat tattacagcg gaatgttagt cactgtgcca ttgcagatct tcgccttaca
    10141 agcggtcaaa tccggcgaag aaattgcaaa tttgctcgcc gattactacc aaaccagccg
    10201 actaattcac gttcaccctt tccaatctct acccgaagac ggaatgcttg ccgcgaatgc
    10261 ttatgcaggt aaagacagct tagagatttt tatttacggc aacagcaccc aacttttact
    10321 tgctgcccgt tttgacaatt taggcaaagg ggcatcaggt gccgcagtgc agtgtatgaa
    10381 tattatgttg ggaagagatg aggttgaggg gttagagctt taaatataaa tgtagggaca
    10441 ggtcctgtgc ctgtccgata atcatcgccc atattcggac gggcacagga cccgtcccta
    10501 caagagaaag aaatatgcaa caacaagaaa tcaatcaatt tgcaaattta ttagaaaaat
    10561 ccaccgcttg tttggtgaaa tggcagggta aaatcattgt ggtgaaatat ggcggtaacg
    10621 caatgattaa tgaggaactg aaaaaatcag tgatggcaga tctgctgtta cttcatcgtt
    10681 taggcgtaaa agtggtactg gtacacggtg gcgggctgga gatttcacaa ggcgtgaaat
    10741 tattgggtaa agaaccgcaa tttatcaacg ggttgcgtgt taccgatagc gatacgatta
    10801 acgtggtttt gcaaatgttg gcaggcaaag ttaataaaag ccttgtcgcc ttattaaaag
    10861 ggaaaggcat tgggctgtgt ggtattgatg gggcgatgtt gcaatgcaaa aaattagagg
    10921 cagaggtgga ttacggcttt gtgggcgata ttgtgaaagt cgatccaact gtgattgaaa
    10981 ttgctcttaa tgcgggcttg attccggttg tttccacggt gggcgttgat gaaaacgggc
    11041 aggcttataa cattaatgca gacaccgctg ccagcgagat tgcgattgcg ttacaagcgg
    11101 aaaaattggt ctcgatgacc gatattgcag gtttattgcg agatcgcttt gatgaaagca
    11161 ccttaattcc ggaagtggaa gtaagcgaag tgcagtccct gattgagcaa ggcattattg
    11221 ccggtgggat gatccccaaa attgcgtgct gtaccgattt catcagagct ggtggctctg
    11281 aggcaaatat tattgacggg cgaatcgacc acgccatttt ggtagaaatg ttcggtggca
    11341 aaaacggcac acggttttat aaaaaataac aggaaagtga aatgacaagc agtaatacga
    11401 ttaagcaatt agataaggat tatatcgccc aaacctatgg cagatttgac cttgcactgt
    11461 cgcacggaaa aggctgtgaa gtgtgggatt ttgagggcaa taagtatctt gattttacca
    11521 gtggcattgg ggtaaatagt ttaggctggg cggatgagga ttggctacaa gctgttacca
    11581 cacaagccgg caaattagct cacacctcaa acctgttttt taccgaaccg gcaagccaat
    11641 tagcccaaaa attagtggct gcaagcggtc taaaacgggc atttttttgc aattcagggg
    11701 cagaggcaaa tgaaggagca attaaaaccg cccgcaaata tagtttcgac aaatacggtt
    11761 ccggtcgttc aacggtttta accctcgtga actcttttca cggacgaacc atttcaaccc
    11821 tcgcatccac tgggcaagag gtattccaca agcatttttt cccctttaca gagggctttg
    11881 aatatttacc tgtaaatggc attgaggcac tgaaagctcg cttggaaact gagaacgttt
    11941 gcgggatttt gctggaggtg gtgcagggcg agggcggtgt ttgcccatta gaggcggatt
    12001 atctgcacgc cgtgcaaagc ctgtgccaag aaaaagatat tttatttatg attgatgagg
    12061 tgcaaaccgg cattgggcga acgggcacac tttttgctta tcaacaattt gatttaactc
    12121 ctggtttagt cacgctcgct aaaggcttgg gcggcggctt gccgattggt gctttcctgt
    12181 taggcgaaaa agtggaaatg acattaggca aaagcgacca cggctcaacc tttggtggca
    12241 atcctgtttc ctgtgctgct gcaaatgtag taatcgataa aataaacgcc gaatttctcg
    12301 cccaagtgca acaaaaaggg cagttgttac agcaacgctt agcgagctta ccaaaagtta
    12361 aatccgtttc aggcttaggt ttaatgctcg gcgtagaatt tgaggaaggc attttagccg
    12421 ctgatattgt tgcaaaatgt atcaacaaag gtgtgctgtt tttaaccgct aaaagcaagt
    12481 taaggctact cccaccgctg atgatctctg aacaacagat agaacaagga atcagagtgt
    12541 tagaggatgt cttgaaagat tcttgagtta ttataaacag taggaatatc ttcttactgt
    12601 tttttattac tattatatag tagcctactt taatctgttg tcactttata tttcttctta
    12661 tgtgtacgat atatcgtgca ataacttccc ttgtttatct gtataacatt ttatttaata
    12721 gaatgactta taaatcaagg agtgacttat gtctaatcaa attgcgttat tgttgatgag
    12781 ccacggcagt tttgcgaggg cggcgttggc gagtgccgag ctgattgtcg ggcagcagga
    12841 aaatgtggca gctatcggcg tagtagcagt ggataatgta gcggacatta aacggcagat
    12901 ggagcaaacc attgctgagt taaacaccga caaaggcttg attattctca ccgatattgt
    12961 tggtggtacg ccgatgaatc ttgcctcttc tcaattaacc caccctaatg tttttgcctg
    13021 ttcgggtttg aatttacctt tattgctaga agtgctgatg agccgtgacg gcaatttgca
    13081 agaaattcgg gaaaatctac cgcttgcata ccaaaacgga tttagcctac gcacacaaca
    13141 agattttgtt tcacaggagg acgatgatga tctgctttag ccgtattgat gaccgtttaa
    13201 ttcacggtca agtagtcacc acttgggtta atttacaccg tattgaacaa attattgtgt
    13261 taaatgatgc ggtggcagcg gatccaaccc aaaaacagat tttaacgatg gcagcaccgc
    13321 agggaattaa agtggtcgcg tttggcattg aaaaatttgg tgaagtgttg cagaagacac
    13381 aaattacccg ccgtactatg ttgttgttta ccaatagcat tgatgtgtta cgcactgtag
    13441 aactaggtgt atcgattgac aaattgaatg tcggcggaat gcgttatcaa gctaggcgtg
    13501 agcagttaag taaagcggtt tcagttacgc cagaagagcg tcaagcattt aaaaccttat
    13561 tggaaaaggg tgttgaagta acggtacaga tggtaccgaa tgatgaaaaa cttaacttac
    13621 aggagattat ctagctatgc tgactgcact acttgttgcc tgctgggcag gtatttgtgc
    13681 cttagatgat attggcacac agatgatccg ccgtccgttg ttaatcgcac cggtggtcgg
    13741 attgattatg ggggatttgg aaacggcgtt gattattggt gctacgcttg aagtgatgtg
    13801 gatggggatc ggcaatgttg gtgcatattc tgcaccggat atgatttccg gaaccgctat
    13861 tggcaccgca cttggtattg ctgctggtga agcttctact gcggttgcac tcgcagtacc
    13921 gacctcactc ttggcacagc agttactcat tctttaccgc tccggcgtat gtgcattgaa
    13981 cccaattgct gaacgctggg cggcaagcgg tgattttgac aagattttcc gcattcacta
    14041 tatcccaatg ttaattgcct tttctattcg tgctattcca acgttcttag ccgtctatta
    14101 cggggcggac attattgccc aagcggtctc tgctctgccg gcaaaagtga ttaccggatt
    14161 aaatgttgca ggcaaaatta ttcctgccat cggtatcggt ttgctgatgt taatgatgat
    14221 taagaaagcc gaactttgga cgttcttaat tgctggcttt acgttggcgg tttatctcaa
    14281 attatcagta ttgccgatta ccttaattgc actaccgctt gcgttgattt acgacttagc
    14341 agtaagcaaa aaagctgaag ctgcaccaac caaaaccgca gatgaagagg attatgacct
    14401 atgagcaata aaattaccaa acaagattta aacaaagtgt tttggcggat gcaggtgctg
    14461 aacgtcacaa acaacttcca atcgatgcag gcgattggat ttttaagtag ctttattccg
    14521 gtattaaaac gactttataa agatcgtcca caggaagaac gagcggaagc aatgaaacgc
    14581 cacttaaaat tttttaacag ccacgttaat tctgatgcat tgattttagg aattgccgct
    14641 gcggtagaag agactaccaa agaggatgaa aaagagacag taaccgcgat taaaaccggt
    14701 ttaatggggc cgttagcagg gctgggagac agcttgttga aattcacctg gttaccgatt
    14761 tgcggtagta tcggggcggc attggcacta agtggcaatg tgttaggccc gattttaatg
    14821 ttcttgttgt ataacagtgt aaacattgcg acgaagtatt acggtatcca tctaggttac
    14881 agcaaagggg ttgatttaat tcacggtgcg ggtaataaca ttttgcaacg actcggcaat
    14941 atggcaaatg tggttggttt aatggtgatt ggcgcattaa ttgcctccgt tgtgaaagtc
    15001 aaagtagttt cacaaattgc cgctggtgat aatgtgatta aattccaaga gatgttagat
    15061 aaagtgatgc cgggactact cagcttactt ttaactgtcg tgatctactg gattttgaag
    15121 aaaactaacg gcaaatatgc tgcaacgatg atccttgcta cgatggggat ctgtatcggc
    15181 ttagtctatg caggaatact cggctaatgg acagtgtgta tgacattatt cggttggaac
    15241 agggcagata cctgttccgc caacagccgg ctcaatcggt acagattttc tttctggaca
    15301 accctgacag taaggatagc aaatggctgg cggagactga tttggcagag tttgagctga
    15361 aattgagcgc ttgtgaagcc cgtccgttct tcctcattca atcagcaaac ggagaacaga
    15421 ttgttgctga acgcacctta cctgttgccg gaatgaataa ttttcgggat atggggggct
    15481 atgtcgctca tcagggcaag cgagtgaaat ggggcaagtt ataccgctcc gatcatctgc
    15541 ataatttaag agacgaaggc gtggcttatc ttgataaatt gggaattcag actgttattg
    15601 actatcgcag cccgaatgaa gtcgccaaat acccaaatcc cccaattaat ggcagagagc
    15661 aaacttttcg gcttgatccg aatgcacata ctgccgagct tgctgcccaa tttagtgcag
    15721 acaagcacga tgaagatcgt aatttggtca ataaaatcat tgctcaaaaa gctgaaggta
    15781 atcttatcaa tcgctacgac attgtaatgg cacaatatcg taattttgtc gaaaaagcag
    15841 aatgccaaac cgcctttgct gaaatgttaa ggttggcgac agaccctgaa aatgcaccat
    15901 tggttcaaca ctgccgtgga gggaaagatc gcactggttt cggtgcaatg ttactgcttg
    15961 gtattttagg cgtgagtaaa gctgatatta ttgctgatta tatgcttact cattataacc
    16021 gccttgctcg taacgaagag aaaatggcga tttaccgtac cttcactcaa gatcaagatg
    16081 tgttggacta cctattgtct ttaatcgata ctcaacccga atttatcgaa caatcgctta
    16141 atactattga aacccaatat ggtactattg agcaatatgc ccaaagggta ttaggtatta
    16201 ctgcgaagga aattgaagca ttacgggcaa attatttggc gtagaacggt agggtgtaat
    16261 attgaacaca ctacaaatgg agaaatttca tatgcgttat tttgcaaaac attggtataa
    16321 aactaccgct tgtctgacaa caattttcac agcatttcct ctttttgctc aaccaattga
    16381 aaatatacca acttcccact acgaattaga aaaaatcatt atatttagcc gacacgggtt
    16441 acgttcccct cttacagaaa aaggcagtga tttagaaaaa tcaacccctt ataaatgggc
    16501 aaattggagt gtaccgaccg gtcatttaac ccataaaggg acgctgttgg aaacctattt
    16561 tgggcagtat cttggtcaat ggctcacaca taatgggtta ttggacaagg caagctgtga
    16621 aagtgggaag cagattgagg tttatgctaa tagcctgcaa cgtacaattg gcactgcaca
    16681 agctttggtt gccggtgggt tttcaggttg taatgtacaa gttaaacacc accagcagat
    16741 tggaaagatg gatccggtgt ttaatccaat tattcgctcc gatgaccaga catttgtgca
    16801 aacagcatta agcaaaattg acctcaataa aacccatcag tatttagcgc catcctatca
    16861 tttattaagc gaaataatcg attatgctca ttcagaaaaa tgtttgcagg aaaaacagtg
    16921 tgaatttttt aatgatgttg gtaaattaag gattaaaaag gataaataac caggtgtttc
    16981 cggtacgatg cgattaagta aaaatattgt cgatgcctta ttgctgcaat attatgaagg
    17041 ttttccttta aaagagattg caaataacca gcttgatagt gatcagaaat ggcaaacact
    17101 caataaaatt aaaaacgatt accaatttat gctacgagga gatccattta ttgctaaaca
    17161 tatttcatta ccgctattaa aatatattca gcaagattta aatagtgaaa ataaaataac
    17221 acttttagtc ggacacgatt ccaatattat agccttactt tctgcattaa atgttaagcc
    17281 ttataaatta gcacatcaat atgaacaaac tccaatagga gggaaagtct ttattgaaat
    17341 ctggaaagaa aaaagtagcc aagcacaaaa agttaaactg gaatatgtat atcaatctac
    17401 tgaccaaatt cgtaaagcga ttccactaag ccttgataaa ccaccgcaac atcacatttt
    17461 gagtttggat tattgccaag ctgaccaata tggattatgc gattatatgg aatttaaaca
    17521 gttactggaa aaagtcattg ctgatacatt gtgagatttt gacaaagtga gtgaaaaagg
    17581 tagcataaaa aagtcgggac agttgccagc tgctccctgt aagatgttgt ttacagcact
    17641 agtaatgcta ctatccccaa aaagctgctg aaaggcagct tttttgttgt atataaaagt
    17701 acacctttct acgcttcatt ctttttctcc aattaaacct aatttaggac ttctagtgat
    17761 aaattcggta tcatatctta attcactaca tatcgtgcaa gccttaaaat tgaaagggct
    17821 gacgaaatcc tatttaattc tgacacacat aagggaatat tatgtcgcaa gatattcaag
    17881 ccgatttaaa aaagatattg gcactattaa gccgtaaccg tcgatttcaa tcattatttt
    17941 tattactgtt aagaagtgaa caatttatta atagtgatgc actttctacg gagttacagc
    18001 tttcagtacg aacggtaaaa aaagagatta agttattaaa agaaaaactt gaaccttacg
    18061 gcattcagat tttttctcga ccgttttatg gctataaatt attgattcag tttgaagaat
    18121 tacacacgca actaaaacag tatttccaaa tatcacagcc gatgacggta aataataaat
    18181 ttgagtctcg ggtaaatgcg attttacgcc gattactggt gagccagcgt gcattgaaag
    18241 ttgaagattt tcagagtgag ctttatttaa gttttaccag tgccttaaca aaagaattta
    18301 gtcaagttaa agccttgtta ggaaaatatg gattgatact cgaagcgaaa ccctatcacg
    18361 gaatgaacat tgtaggtgaa agttatcgta aaataatgct cacagtacga ttatataaat
    18421 attttaccca gcttgaacat ccatttggaa ttaaagaatt tgaacagtgt tttgcttgtc
    18481 ctatgactga aaaaatccgt gaaaggttag ctaagacaat tattcatttc aatttagtat
    18541 tttctga
//
LOCUS       DANMBQ010000037        18173 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.037, whole genome shotgun sequence.
ACCESSION   DANMBQ010000037 DANMBQ010000000
VERSION     DANMBQ010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18173
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.037"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            82..1173
                     /gene="ulaG"
                     /locus_tag="PXE92_001111"
     CDS             82..1173
                     /gene="ulaG"
                     /locus_tag="PXE92_001111"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001863918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HDL5760372.1"
                     /translation="MSKIQEITRESWILSTFPEWGTWLNEEIEEEVVPEGNFAMWWLG
                     CVGVWIKTPAGANICMDLWCGRGKSTKKVKDMVRGHQMANMAGVRKLQPNLRAQPMVL
                     DPFAINEVDFILASHYHSDHIDVNVAAAICNNPKLDHVKFVGPWHCAELWKKWGVPEE
                     RIIVVKPGDVVKLKDVEIHALDSFDRTCLVTLPVEGAEERGGELAGLCPSDEEMGRKA
                     VNYVFKTPGGTIYHGADSHYSIQFAKHGKQFDIDVALNNYGENPVGIADKMTSVDLLR
                     MAECLRCKVIIPVHHDIWTNFMASTQEIIDLWRMRKDRLQYQFHPFIWEVGGKYVYPR
                     DKDLIEYHHPRGFDDCFEQEPNIQFKSML"
     gene            1257..2003
                     /gene="ulaR"
                     /locus_tag="PXE92_001112"
     CDS             1257..2003
                     /gene="ulaR"
                     /locus_tag="PXE92_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HDL5760373.1"
                     /translation="MNESYRHKELLALLEERKALSTADIMQLLNISPATARRDISKLD
                     GQGKLKKVRNGAEAILAPTFLQHTKITNNAQEKRRIAEAAGRLCKDGESLILTCGSTM
                     EMLGEVLCGRKLQIITNYLPLANQLIAGCHDDVVIMGGQYNKHKKVMLSINTQNEMTY
                     AATTMFTSGKGLTSEGLFKTDMIIANAEQQMAKHAERYVVLLDSTKLGKKVGMLFKEF
                     DKIDLLITGKEADPTIIQALRNKGLDIILA"
     gene            2058..2918
                     /locus_tag="PXE92_001113"
     CDS             2058..2918
                     /locus_tag="PXE92_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase"
                     /protein_id="HDL5760374.1"
                     /translation="MRKHKLGIYEKALPKNISWQDRLSIAKVCGFDFVEMSIDETDER
                     LARLDWSKKERAKLVKTIINTGVTIPSMCLSGHRRFPFGSCDEATRQKAYEIMEKAIQ
                     LAVDLGIRTIQLAGYDVYYEEQDEGTIQRFQQGLEWAVELAASNQVTIAVEIMDTQFM
                     SSISRWKKWDEIIKSPWFTVYPDLGNLSAWNDNVAEELKLGIDKISAIHLKDTYKVTE
                     TCKGQFRDVPFGDGCVDFAACFKTLAELNYRGAFLIEMWTEKAEEPITEIINARRWIE
                     QKMQEGGFTL"
     gene            2915..3634
                     /locus_tag="PXE92_001114"
     CDS             2915..3634
                     /locus_tag="PXE92_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HDL5760375.1"
                     /translation="MTQLTELTPALQALRERVLKANLELPKYGLVTFTWGNVSEIDRE
                     TGLVAIKPSGVEYDAMTVEDIVLVDLQGNRVYGDKKPSSDTETHLELYRQFTDIGGVV
                     HTHSRNAVGWAQAGRDLLALGTTQGDYFYGAIPCTRKMTAEEIAGSYELETGKVIVET
                     FRTRGIEPKAVPGVLVHSHGPFTWGKDGHDAVHNSVVLEEVAYMNFISHQIRPQIGPM
                     QQELLDKHYLRKHGANAYYGQ"
     gene            3882..6332
                     /locus_tag="PXE92_001115"
     CDS             3882..6332
                     /locus_tag="PXE92_001115"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012311.1,HMM:TIGR02601.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL5760376.1"
                     /translation="MKNRNYFVAIATILALSPEVNATELSDQLASRTRYYPSATDSYY
                     SYYKYAPIYSGYYTSNSRNGYSSWYYPGSNAGVTTRTVSTTVNGITVTKVYTTHNGRT
                     TVRTTYAPAVNKPIVNKPTPIANKPVVDTPTQPVIDANPIMDPPVQPIVDNKPITDTQ
                     PNPITDNKPVIESPIDDTRPVIIRPTTPVNLHPEPVAVGVPNVGIRWNDRSRGYNIDD
                     PNNKQNVKLTGEGVKVGILDSGFKNYLMQDDILKKFGNRAVIIETGRTAPASATHGIE
                     VAEMVGGGNSRNGVASKSTLLLADITKTTNAGTGLSATAPIYYDLWNRGARIFNQSYG
                     IPKPLTYFNNNRNSSYYYLHQFDGNVLQFYKDKVKEGGLFVWAAGNNRGDLDPSLQAG
                     LPHYEADLEKGWISVVAVATRTNQGLGNFEWSNLLPYSQAGVAKNWTVTAMGDYIFNL
                     GGRNIIASGSSFAAPAVTGTAALVKQKYPWMDGNLIKQSILSTATDIGAPGVDDVYGW
                     GLLNIEKATNGPARFGKRLALADNVTVNIPNGSYEFSNNINGDAGLVKNGQGELILSG
                     ASTFEGDTTLNEGAVTINGKKYVSKVNVSPSGTLVVNNTTLENGVNNEGTVVNQGYST
                     IKRAYVASAQSTLVSDLGSNLNVKGEVDLNGSTLSLAAVKEGKAQYVTQKGLSMSAIT
                     SDSAIKGNFAAIETSGLLTATAEKTNENEVKATVSRKNVATALESSFSALDNQIEGNN
                     GSTNATNDEFAQQAATLQNSIANINTQSVVLDSLSGQIYASAQALTFENSETVNKDLS
                     NRLVMLGTLDNVGETAGV"
     gene            6342..7157
                     /locus_tag="PXE92_001116"
     CDS             6342..7157
                     /locus_tag="PXE92_001116"
                     /inference="COORDINATES: protein motif:HMM:TIGR01414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5760377.1"
                     /translation="MYGNGTLKEIGFGEGKTNTYAGQIGFDKPVTDHVILGAALNYSK
                     AKVNFDRYGGSSKADGIGASLYARIGNKHKTPWYLQGRAGYGSVDSDVERHIILADNN
                     ASTAKINHRDRVFSAYVESGYDFKQGRFALTPFVGFSHDVVRRGAFSEQNSQFGLTAD
                     KATYKQTSGLIGLRTSLEVNLAGMKTTFQGYVNHQKAFNREDLSFKASYTGLQDAKFD
                     VKGIGLAKHKTWVGIGALAEVNKNTSLYVNYDLKLAKNSGHNNVVTAGIRINF"
     gene            complement(7244..8104)
                     /gene="pdxY"
                     /locus_tag="PXE92_001117"
     CDS             complement(7244..8104)
                     /gene="pdxY"
                     /locus_tag="PXE92_001117"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
                     /protein_id="HDL5760378.1"
                     /translation="MKNILSIQSHVVYGYAGNKASTFPMQLLGVDVWALNTVQFSNHT
                     QYGKWGGMVMPKEQIGSIVDGIHNIGELHRCDAVLSGYIGSAEQVAEIIQAFHKVKAE
                     NPNAIYVCDPVMGHPDKGCIVADGVKEGLINLAMAQADIITPNLVELRELTGLTVENF
                     EQAVEAVKVILTKGPKKVLVKHLSRVGKESNKFEMLFANQDGIWHISRPLYQFAKEPV
                     GVGDLTAGLFVANLLNGKSDLEAFEHTANAVNEVMEQTARSGLYELQIIASRDRIVNP
                     QCSYQAVKIA"
     gene            8223..8298
                     /locus_tag="PXE92_001118"
     tRNA            8223..8298
                     /locus_tag="PXE92_001118"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8256..8258,aa:Thr,seq:tgt)
     gene            complement(8393..9346)
                     /gene="accA"
                     /locus_tag="PXE92_001119"
     CDS             complement(8393..9346)
                     /gene="accA"
                     /locus_tag="PXE92_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HDL5760379.1"
                     /translation="MSQEFLDFELPIAELEAKIESLRAVSEQDDKINLDDEIKRLQKK
                     SEELTKKTFANLDAWQISRMARHPNRPYTLDYIEHIFTEFDELAGDRAFADDKAIVGG
                     IARLDGRPVMVIGHQKGRTVKEKVKRNFGMPAPEGYRKALRLMEMAERFNMPIITFID
                     TPGAYPGIGAEERGQSEAIARNLREMSQLSVPVICTVIGEGGSGGALAIGVGDKVNML
                     QYSTYSVISPEGCASILWKSADKASTAAEVMGLTAPRLKELELIDNIVPEPLGGAHRN
                     VEQIAQNLKQRIVEDLAGLDQLNKEDLLERRYQRLMNYGYV"
     gene            complement(9400..10824)
                     /locus_tag="PXE92_001120"
     CDS             complement(9400..10824)
                     /locus_tag="PXE92_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HDL5760380.1"
                     /translation="MKKQITRRQFLQGSALAAGFATVPTPLLAAERPQLNIPPLMDIG
                     RGKPVRLDLRPAQTQFDKGKLVDVWGVNGQYLAPTVRVKSGDFVKLTYLNNLPQKISM
                     NIQGLQASSEMIGTVHRSLDPKSSWSPIVSINQPACTCWYHADTMLNSAFQVYRGLAG
                     LWMIEDEQSKKATLPNKYGVNDIPLILQDQLLNKDGVQVLDKNTSQFFGKRLFVNGQE
                     SPYFNVPRGWVRLRIVNASLSRAYELRLDNEQPLYLIATGLGMLAEPLETESVQLAPS
                     ERVEVLVDLSEGKAVSLISGQKRDIFYKIGQVFADNDELNDNVILELRPEGMAAVLNN
                     KPSLPAFNLEEFNLKISQERRFAIRPADYLINQKRFDPKRIDFTAQKGSVERWYLHST
                     QAVGFTLQGAKFIIETLNRKQYPIKQLAWRDTVWLEAEQEITLLVRFDNTAPEQLPFT
                     FGVSDFMLRDRGTMGQFSVIENGQ"
     gene            complement(10826..11560)
                     /locus_tag="PXE92_001121"
     CDS             complement(10826..11560)
                     /locus_tag="PXE92_001121"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HDL5760381.1"
                     /translation="MLKIFRILIVALAAIFISIFGTIYALLRLRHPSSVGVVARWFGA
                     LHKLVGLELITRKKPEINYPVVYIGNHQNNYDMVTISSMVAEKTVSIGKKSLIWIPFF
                     GLVYWATGNIFIHREKRSSAIETMNKAGQIVKERNVSVWMFPEGTRSRGRGLLPFKTG
                     AFHLAISAGVPIVPVVCSNLHNKVDLNRSNNGTVICEMLDPIDTSGYSRENVKELMEK
                     CHQIMLAKFEQLNQEVEQLENTAKNA"
     gene            11707..12204
                     /gene="tpx"
                     /locus_tag="PXE92_001122"
     CDS             11707..12204
                     /gene="tpx"
                     /locus_tag="PXE92_001122"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDL5760382.1"
                     /translation="MSKVTLAGSPIDVAGTFPQKGDVVADFTLVNSDLSDVSLSDFDG
                     KRKVLNIFPSIDTGICATSVRVFNQKAADVANTVVLCISADLPFAQARFCGAEGIENA
                     KVLSSFRHRDLHNKLGVDIISGPLAGLTSRSVIVLDENNKVLHSELVPEIKQEPDYEA
                     ALAVL"
     gene            complement(12289..13911)
                     /gene="yidC"
                     /locus_tag="PXE92_001123"
     CDS             complement(12289..13911)
                     /gene="yidC"
                     /locus_tag="PXE92_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDL5760383.1"
                     /translation="MNNRGLLLMGLFLVSILIFTQWQQDFDPEIQAQKQAQVAAQTQQ
                     AGDLPSASNANNPIADSITQGKTITVESDVLRLTIDTLGGDVIGSDLLKHNAELHSNT
                     PFKLLQQDGDKIYVAQSGLVGKNGIDTNAGRPQYAVTADSFKLAEGQNEISVPLTFEK
                     EGVVYTKTFTLKRGSYDVGVNFNIKNNTAQAIEVQPYGQLKHSIVESSGNLTMPTYTG
                     GAYSSETNYKKYSFQDMEKANLSVDTKAGWIAVLQHYFVSAWVPNQDADNSLYSRTNN
                     GVATIGYRGPLTTIAPNSEANLNSKLWTGSKDQKEMGESANHLDLTVDYGWAWFIAKP
                     LFWLLTAIQKIVSNWGLAIIGVTIVVKTILYPLTKAQYTSMAKMRMLQPRITEMRERF
                     GDDRQRMSQEMMKLYREEKVNPMGGCLPILIQMPIFIALYWTFMEAVELRHAPFFGWI
                     QDLSAQDPYYILPLLMGGSMFLLQKMSPTPVADPVQQKVMTFMPVIFTVFFLWFPSGL
                     VLYWLTSNLITIAQQWLIYRNLEKKGLHSRKK"
     gene            complement(14064..14489)
                     /locus_tag="PXE92_001124"
     CDS             complement(14064..14489)
                     /locus_tag="PXE92_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog fold thioesterase"
                     /protein_id="HDL5760384.1"
                     /translation="MTIWKQTATCEQLNTLSQKSAVSHLGIEFTAIGEDWIEAQLQVD
                     ERTQQPFGVLHGGVSAALAETTANAGALMVCEPHQIAVGMELNISHLKSIPAGTKAIA
                     KATPLKLGREVQVWNIDIKDEQGNLCAVARLSTKTLDKR"
     gene            complement(14818..17910)
                     /locus_tag="PXE92_001125"
     CDS             complement(14818..17910)
                     /locus_tag="PXE92_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HDL5760385.1"
                     /translation="MIPRLSEVPQLDKATQSYLTELVNQHFSGEIASNYADRLSLATD
                     NSVYQQIPQAILFPKSVSDVVILTKLAQKPEYQHLTFTPRGGGTGTNGQSLNNNIIVD
                     LSRHMNQILELNVEERWVRVQAGVVKDQLNQFLKPHGLFFSPELSTSNRATLGGMINT
                     DASGQGSLQYGKTSDHILAIKSVLINGDILETQAVKSADFFAHIEGLNLSALGKTLHR
                     EIFNRCKTLRPKVLNELPQLNRFITGYDLKNVFNHGESEFNLTRILTGSEGSLAFICE
                     AKLNLLPIPKYRTLINIKYNSFDAALRSAPFMLEAKALSVETVDSKVLNLAKQDIVWH
                     SVSDLLTEDPANPILGINIVEYASSDQTQIETQVKALCQSLDQKMANNEAGIIGYQLT
                     SDVNSIEKIYAMRKKAVGLLGNAKGWAKPIAFVEDTAVPPENLADYIVEFRALLDRYN
                     LPYGMFGHVDAGVLHVRPALDLCDKAQVETFKQISDQVVELTAKYGGLIWGEHGKGMR
                     SYYGERFFGETLWQELRYIKTLFDPYNRLNPGKICTPLESETSLYPIDSQMRADFDRQ
                     IPIQVREEFKGAMNCNGNGLCFNFDVHSTMCPSMKVSGNRLYSPKGRATLVREWLRLL
                     TEQNVSPDDLIFKPRKQAVKLADFVAKIRNTLNKNKEYDFSHEVKAAMDTCLACKACA
                     SQCPIKIDVPTFRSQFNELYHSRYLRPLKDYVVSNLEFIAPLMAKQPRFFNFFSTSTF
                     AEKAANKTIGMTYLPALSVPNLQHQLVEVGYQGESLESLEQQATSGDFSAKNCKTLFI
                     VQDPFTSYYDAKVVADFIALIKKLGFKPIVLPFKPSGKAQHVKGFLHKFAKTAKNQAD
                     FLNRVAKLGLPMVAVDPALTLLYREEYKEILKEARGDFKVLLAHEWLREVIKNGELEN
                     CKKSANSDRLPWYLFAHCTESTALPSSMKEWQAIFTHFGETLLNENVGCCGMAGTFGH
                     ETKHVEMSKAIYQQSWQIKLKNKPLERCLATGYSCRSQVKRFEQQGIKHPIQALLDVI
                     "
BASE COUNT         5199 a         3659 c         3958 g         5357 t
ORIGIN      
        1 aaagatgtac aaatttttgt gattgtttat gattggtttt gattgcattg ttcttatttt
       61 agcgtaaatc aggagactat tatgagcaaa attcaagaaa tcactcgtga aagctggatc
      121 ctttcaactt tccctgaatg gggtacttgg ttgaatgaag aaattgaaga agaagttgta
      181 ccggaaggca attttgcaat gtggtggcta ggctgtgtcg gtgtgtggat taaaacccca
      241 gctggtgcga atatctgtat ggatttatgg tgcggtcgtg gtaaatccac caagaaagta
      301 aaagatatgg tgcgtggtca tcaaatggca aatatggcag gggtgcgtaa gctccagcct
      361 aatttgcggg ctcaaccgat ggtgttagat ccgtttgcga ttaacgaagt ggacttcatt
      421 ctcgcttctc actatcactc agaccatatt gatgtaaacg tggcagcggc tatttgcaat
      481 aacccgaaat tagaccacgt taaatttgtc ggcccttggc actgtgcaga attatggaaa
      541 aaatggggcg tgccggaaga acgtattatt gtggtaaaac cgggcgatgt cgtgaaatta
      601 aaagatgtag aaattcacgc cctagattca tttgaccgta cctgtttagt gaccttaccg
      661 gtagaaggtg cagaagaacg tggcggagaa cttgcaggct tatgcccatc agatgaagaa
      721 atgggacgca aagcggtgaa ctatgtgttc aaaaccccgg gcggtacgat ttatcacggt
      781 gcagattctc actactcaat ccaattcgct aaacacggta agcaatttga tattgacgta
      841 gcgctgaata actatggcga aaacccggtt ggtattgcgg ataaaatgac ttcagttgat
      901 ttattacgta tggcggagtg tttacgctgt aaagtgatta ttccggttca ccatgatatt
      961 tggacaaact ttatggcaag tacgcaagaa attattgatt tatggcgtat gcgtaaagat
     1021 cgcttacaat accaattcca cccatttatt tgggaagtgg gcggcaaata tgtttaccca
     1081 cgtgataaag acttaattga atatcatcac cctcgcggct ttgatgactg cttcgagcaa
     1141 gagccaaata ttcaatttaa atccatgcta taggtgagca gtcgccactc tcactggaga
     1201 gtggcgtttt agcaagttca ttatggagca gtagtgatta gtaatgggat aaagtagtga
     1261 acgaaagtta tagacacaaa gagttattag ccctgttgga agagcggaaa gcactgtcaa
     1321 cagcagatat tatgcagctg ttaaatattt ctccggcaac agcaagacgt gatatcagta
     1381 aattagatgg tcaaggtaaa ttaaaaaagg ttagaaacgg agcagaagca attctggctc
     1441 ctacattttt acagcacaca aaaataacta acaatgcgca ggagaaacgt agaatagcgg
     1501 aagctgccgg tcgtttatgt aaagatgggg aaagtcttat tctgacgtgt ggttccacaa
     1561 tggaaatgct cggtgaagta ttatgtggta gaaaattgca aattattacc aattatctac
     1621 cgcttgcaaa ccagttgatt gcaggttgcc acgatgatgt agtgattatg ggtgggcaat
     1681 ataataaaca taaaaaagtg atgctctcaa ttaacaccca aaatgagatg acttatgccg
     1741 ctaccacaat gtttaccagt ggcaaaggct taaccagcga aggattattt aaaaccgata
     1801 tgattattgc caatgccgag caacaaatgg caaagcacgc agaacgttat gtggtgttat
     1861 tggatagcac caagctcggc aaaaaagtcg gtatgctgtt taaagagttc gataaaattg
     1921 atttattgat taccggcaaa gaggcggatc cgactattat ccaagcatta agaaacaaag
     1981 gcctggatat tatcttggct tagcctgtag cggtcaaatt taatcaaaat tttacttatc
     2041 atcttcaagg gaaaactatg agaaaacata aactgggtat ttacgaaaag gccttgccga
     2101 aaaacatttc gtggcaagac cgcctttcta tcgccaaagt ctgcggtttt gactttgtgg
     2161 aaatgtcgat tgacgaaacg gacgaacgct tagcccgcct tgattggagc aaaaaagaac
     2221 gtgccaagct ggtgaaaacc atcatcaaca ccggcgtgac cattccgtca atgtgcttgt
     2281 ccggtcatcg ccgtttcccg tttggttctt gtgatgaagc gacccgccaa aaagcctatg
     2341 aaattatgga aaaagccatt caactggcgg tcgatctcgg tattcgcacc attcagcttg
     2401 ccggctatga cgtctattac gaagagcagg acgaaggcac aatccaacgc ttccaacaag
     2461 gcttagaatg ggcggtggag ctggcggcaa gcaaccaagt taccattgcg gtggaaatta
     2521 tggacaccca atttatgagt tcgatttccc gctggaaaaa atgggacgag atcatcaaat
     2581 caccgtggtt caccgtgtat ccagatttag gcaacctctc agcgtggaac gacaacgtag
     2641 cggaagagct gaaactcggc atcgacaaaa tctctgccat tcacttaaaa gacacttaca
     2701 aagtgactga aacctgcaaa gggcagttcc gtgatgtgcc atttggtgac ggttgcgtag
     2761 atttcgccgc ttgttttaaa acccttgccg agctgaatta ccgtggcgca ttcttaattg
     2821 aaatgtggac ggaaaaagcc gaagagccga ttactgaaat catcaacgcc cgccgttgga
     2881 tcgaacaaaa aatgcaagaa ggaggattta ccctatgacg caattaactg aattaacccc
     2941 tgcattacaa gccttaagag agcgtgtgtt aaaagccaat ttagaattac cgaagtatgg
     3001 cttggtaact ttcacttggg gtaacgtaag tgaaatcgac cgtgagaccg gtttagtcgc
     3061 catcaaacct tccggcgtag aatacgatgc gatgacggtg gaagacattg tattggttga
     3121 tttacaaggt aatcgagttt acggagataa aaaaccgtct tctgatacag aaacgcactt
     3181 agaactttat cgccaattca ctgatattgg cggtgtggta cacactcact ctcgcaatgc
     3241 tgtaggttgg gcacaagcag ggcgtgattt attggcactt ggcaccactc aaggcgatta
     3301 tttctacggt gcgattcctt gtactcgcaa aatgaccgca gaggaaattg ccggcagtta
     3361 tgagctggaa accggaaagg tgattgtcga aactttccga actcgaggta ttgaaccgaa
     3421 agcagttcca ggtgtgttgg tacattcaca cggtccattt acctggggaa aagatggaca
     3481 cgatgctgtg cataattctg tggtattaga agaggtggct tacatgaatt ttattagcca
     3541 tcaaattcgc ccacaaattg gcccaatgca acaggaatta ttagataagc attatctgcg
     3601 taagcatggt gcaaatgctt attatgggca atagctaata acctaaaaat tattttccaa
     3661 attatcaaca gctttcgagg ggctttctat aatcggaata gctcctcagt ctgtttgagt
     3721 ttatggatag atccacaaat aattaccatt ttccttttct tgattttaat tttgattttt
     3781 gttctaatct ctgcctcttg tttttacaag tctattaagg atccgtagta gatttgaaat
     3841 aaacaagagt atctttgtat ttattagaag gaaaccaaaa ggtgaaaaat agaaattatt
     3901 ttgttgcaat agcaacaata ttagccttat cgccagaggt taacgcaact gaactttcag
     3961 atcagcttgc aagtagaaca agatattatc cttccgccac ggatagttat tatagttact
     4021 ataaatatgc accgatttat tcgggctact atacatcgaa tagccgtaat ggttattcgt
     4081 cgtggtatta tccaggtagc aatgcaggtg taacaaccag aactgtttcg acaacagtta
     4141 atggcattac agttacaaaa gtttatacaa cgcataatgg gagaacaacc gttcgtacca
     4201 cttatgctcc tgctgtgaac aaaccaattg taaataaacc gacaccgatt gccaataaac
     4261 ccgttgtaga tacgccaact caaccggtta ttgatgccaa cccaattatg gatccgccag
     4321 tccaaccaat agttgataat aaacccatca ctgatacaca gcctaatcca attacagata
     4381 acaaacctgt cattgaatcg ccaattgatg acacccgtcc agttatcatt aggcctacaa
     4441 caccggtaaa tcttcatcct gaacctgtag ctgttggtgt acccaatgta ggtattcgat
     4501 ggaatgaccg ctctcgtggt tacaacattg atgatcctaa taacaaacaa aatgttaagt
     4561 taactggtga aggtgttaaa gtcggtatct tagatagtgg ttttaaaaac tatttaatgc
     4621 aggacgatat actcaaaaaa tttggtaatc gcgctgttat tattgaaaca gggcgtactg
     4681 ccccggcttc tgcaacacat ggtattgagg tcgcagaaat ggttggggga gggaactctc
     4741 gcaatggagt agcgtctaag tcaacgttat tacttgcgga tattaccaaa acaacaaatg
     4801 cgggtacagg attatccgca acagctccaa tttattatga cttatggaat aggggagccc
     4861 gtatttttaa ccaatcatac ggtattccaa agcctcttac ttattttaat aacaatagaa
     4921 attctagcta ttactattta caccaatttg atggtaatgt gttgcaattc tataaggata
     4981 aagtaaaaga ggggggctta tttgtctggg ctgcggggaa taaccgtggt gatcttgatc
     5041 catcactcca agctgggtta cctcattatg aagctgactt ggaaaaaggt tggatttctg
     5101 ttgttgcggt agcaaccaga actaatcagg gattgggtaa ctttgaatgg agcaatttat
     5161 tgccatattc tcaagccggt gtggcaaaaa attggaccgt taccgcaatg ggtgactaca
     5221 tctttaattt aggaggtaga aacattattg ctagtggttc atcctttgca gctccagccg
     5281 ttacgggtac agcagctctc gtgaaacaaa aatatccttg gatggatggt aaccttatca
     5341 aacaatctat tctctcgacg gcaaccgata tcggcgctcc tggagttgat gatgtatatg
     5401 gatggggttt acttaatatt gaaaaagcca ctaatggccc tgcgcgtttt ggtaaacgac
     5461 tcgctttagc cgataacgtg actgtaaata ttccaaatgg aagctatgag ttttccaata
     5521 atattaacgg tgatgcaggc ttggtgaaaa atggccaagg cgaattaatt ttatcgggtg
     5581 ctagtacttt tgaaggggat acaacactca atgaaggtgc tgtcactatt aacggtaaaa
     5641 aatatgtgtc taaagtaaac gtatctccaa gtggtacatt ggttgtcaat aataccacgt
     5701 tagaaaatgg cgtaaataac gagggtacag ttgtcaacca gggttattct acgattaaga
     5761 gagcttacgt tgcttcagca caaagtacgc tagtgtcaga tttaggttca aacttaaatg
     5821 taaaaggaga agttgactta aacggctcta ctttatcact agctgcggta aaagagggta
     5881 aagctcagta tgtgacccaa aaaggtttat caatgagtgc tattacttct gattccgcaa
     5941 ttaagggtaa ctttgctgca atagaaacct cagggttatt aactgcgacg gcggaaaaaa
     6001 ccaatgagaa tgaagtaaaa gcaacagtta gccggaaaaa tgtcgcgact gctttagaga
     6061 gctcattttc ggcattggat aaccaaattg aaggaaataa tggttctaca aatgctacaa
     6121 atgatgaatt cgcacaacaa gcggctactt tacaaaacag tattgcaaac atcaatacgc
     6181 aaagtgtggt tttagatagc ttatctggtc aaatttatgc gtctgcgcaa gcgcttactt
     6241 ttgaaaactc agaaacagtg aataaagatc tctctaaccg tcttgtaatg ttaggaacgc
     6301 tggataatgt aggtgagact gctggtgtgt gagtaacggg tatttatggg aatggtactc
     6361 taaaagaaat agggtttggt gaaggtaaaa ccaataccta tgctggccaa ataggttttg
     6421 ataagccagt tacagaccat gtgattttag gtgcggcact taattattct aaagcaaaag
     6481 tgaacttcga tcgttatggc ggtagttcaa aagcagatgg aataggtgca tcattatatg
     6541 cccgtatagg caataagcat aaaacacctt ggtatttaca aggtcgagcc ggttatggca
     6601 gtgttgattc agatgtagag cgtcatatta ttttggcgga taataacgca agtacagcaa
     6661 aaatcaacca ccgagacaga gtattttctg cttatgttga atcaggctat gacttcaagc
     6721 aaggtcgctt tgcgttaact ccatttgtcg gttttagtca tgatgttgtc agacgtggcg
     6781 cattcagtga gcaaaacagt caatttggtc tcaccgcgga caaagcaacc tataaacaaa
     6841 caagcggatt gattggttta cgaacatctt tagaggtgaa tttagctggg atgaaaacga
     6901 ctttccaagg ctatgtaaat catcaaaaag cgtttaatcg agaagatctt agctttaaag
     6961 caagttatac aggtttacaa gatgcaaaat tcgacgtaaa aggtattggg cttgcaaaac
     7021 ataaaacgtg ggtagggatt ggtgcattgg cggaagtaaa taaaaatact tccttatatg
     7081 tgaattacga ccttaaactc gcaaaaaata gtggtcacaa caacgttgtg actgctggga
     7141 ttagaattaa tttctaactg aatcttttta aacaaaacgg gcgtttatac gcccgttttt
     7201 ttatagttat agagataata atgttatttt atacttcatt taattaggca atctttacag
     7261 cttggtaact acactgtgga ttaacaatcc gatcacgaga agcaataatt tgtaactcat
     7321 aaagccctga tctagcggtt tgttccatta cctcattgac cgcatttgca gtgtgttcaa
     7381 aggcttctag atcggatttt ccatttaata agttcgccac aaatagccct gcggttaaat
     7441 cgcctacacc gacaggttct ttggcaaatt ggtagagtgg gcggctgatg tgccaaatgc
     7501 catcttggtt ggcgaacagc atttcaaatt tgttgctctc tttgccgact cggcttaaat
     7561 gtttaaccaa tacttttttc gggcctttgg ttaaaatcac tttcactgcc tcgaccgctt
     7621 gctcaaaatt ttccaccgtt aaaccggtta attctcttaa ttccactaaa tttggtgtga
     7681 taatgtcggc ttgtgccatt gccagattga tcaatccctc ttttacgccg tctgccacaa
     7741 tgcagccttt gtcggggtgt cccattaccg ggtcgcatac ataaattgcg tttggatttt
     7801 ccgctttcac tttatgaaaa gcctgaataa tttcggctac ttgttctgcc gagccgatat
     7861 agccagagag tacggcatcg caacgatgca gttcaccgat attgtgaatg ccatcaacaa
     7921 tgctaccgat ttgttctttt ggcatcacca taccgcccca ttttccatat tgggtatggt
     7981 tggaaaactg tacggtattt aacgcccata catcaacacc taacagctgc ataggaaaag
     8041 ttgaagcctt attgccggca tagccgtaga caacgtgcga ttgtatggat agtatgtttt
     8101 tcattcattc actcctttaa aatttcaata tgtgttgttt tttagtcatt tgaagttgca
     8161 aggacttgaa gctcatcaag aaatctctat aatcccgcct cgttctctta tccattcaat
     8221 atgccgactt agctcagtag gtagagcaac tgacttgtaa tcagtaggtc accagttcga
     8281 ttccggtagt cggcaccatc acctttattt tctgatgagt cccctttaat gtaaaatggc
     8341 aagattttgc aaattttcac aaaaatctta ccgcttgtag ggtgaaattg aattagacgt
     8401 aaccgtaatt cattaagcgt tgataacggc gttccagtaa atcctcttta ttaagttgat
     8461 ctaaccctgc caaatcttca acaatacgct gtttaaggtt ttgggcgatt tgttcaacat
     8521 tgcgatgagc accgcctaag ggttccggca cgatgttatc aatcagctca agctctttta
     8581 aacgaggggc agttaaaccc attacttctg ctgccgttga ggctttatcg gcacttttcc
     8641 acagaatcga ggcacagcct tcaggtgaaa ttaccgagta agttgaatat tgcaacatat
     8701 tgaccttatc gcccacaccg atcgctaatg caccgcccga gccaccttcg ccaattaccg
     8761 tacagattac tggcacggaa agttgagaca tttcacgcag gttacgggca atcgcttctg
     8821 actgaccacg ctcttccgca ccaatgcccg gataagctcc cggtgtgtcg ataaaggtga
     8881 tgattggcat attaaagcgt tctgccattt ccattaaacg taacgctttg cgatagcctt
     8941 caggagcagg cataccaaag ttacgtttca ctttctcttt tacggtacga cctttctgat
     9001 gaccgataac catcaccgga cgtccgtcca gacgggcaat accaccgaca atcgctttat
     9061 catcggcaaa ggcacggtcg cctgccagtt cgtcaaattc ggtgaaaata tgctcaatat
     9121 aatctaaagt gtacgggcga ttggggtggc gtgccatacg ggaaatttgc cacgcatcta
     9181 aattagcaaa ggttttcttg gttaattcct cgcttttctt ttgtaaacgc ttgatttcat
     9241 catcaagatt aattttgtca tcttgctcgc tgactgctct taaagactcg atcttggctt
     9301 ccaattcagc aatcggcaat tcaaaatcta aaaattcttg gctcattcta ttttcctttt
     9361 tatgggcaaa attatggggc attatcgctt atcagtcggt tattgtccat tttcaattac
     9421 gctaaattga cccatcgtac ctctatcacg cagcataaaa tcgctcacgc caaaggtaaa
     9481 tggcagttgc tcaggggcag tattatcaaa gcgaaccaac agcgtgattt cttgctccgc
     9541 ctcgagccaa acggtgtccc gccacgcaag ttgtttgata gggtattgct tgcggtttag
     9601 ggtttcaata atgaattttg caccttgtag cgtaaatccg accgcttgtg tgctatgtaa
     9661 ataccaacgc tcaacgctgc ctttttgcgc ggtaaaatca atgcgttttg ggtcaaaccg
     9721 cttttggttg attaaataat cagccggacg aatggcaaaa cgtctctctt ggctgatttt
     9781 caggttaaat tcctctaagt tgaaagccgg taaactcggt ttattattca ataccgctgc
     9841 cattccttca gggcgaagct ctaaaatcac gttatcattc aattcgtcgt tgtcagcaaa
     9901 gacctgcccg attttgtaaa aaatatctct tttttgaccg cttatcagcg ataccgcttt
     9961 cccttcgctt aaatcgacca acacttccac cctttcactc ggtgcaagtt gaaccgattc
    10021 ggtttcaagt ggctctgcca gcattcctaa gccggtggcg attaggtaca acggctgctc
    10081 gttatctaag cgtaattcat aagcacggga aagtgaggca ttgacgatcc gcaatctgac
    10141 ccagccacga ggcacgttaa aataaggcga ttcctgcccg ttgacaaata atcgcttacc
    10201 gaaaaattgt gaggtgtttt tatctaacac ctgtacgccg tctttgttga gcagctggtc
    10261 ttgcagaatt aacggaatgt cgttcacgcc atatttattc ggtaaagtgg cttttttgct
    10321 ctgttcatct tcaatcatcc acaagccggc taagccacga tacacttgga atgccgagtt
    10381 gagcattgta tcggcgtgat accaacaagt acaagccggt tgattgatag aaacaatcgg
    10441 cgaccagcta cttttggggt caagggaacg atgcaccgtg ccaatcatct cacttgaggc
    10501 ttgcaatcct tgaatattca ttgagatttt ttgcggtaaa ttattgagat aagttaattt
    10561 gacaaaatcc cccgatttta cccgtacggt tggggcaaga tattgcccgt tcacacccca
    10621 tacatcaacc aatttgcctt tatcaaattg ggtttgtgcg gggcgtaaat ccaaccgaac
    10681 cggctttcct cgcccaatat ccattaaagg cggaatgttc agttgcggtc gctctgctgc
    10741 taatagcggt gttggcactg ttgcaaatcc agccgcaagg gcagagcctt gtaaaaattg
    10801 gcgtcgggtg atctgttttt tcatattagg cgttttttgc agtgttttct aactgttcga
    10861 cttcttgatt aagttgttca aattttgcca acataatttg atggcacttt tccatcagtt
    10921 ctttgacgtt ttcacgggaa tagcctgaag tatcaatcgg atcaagcatt tcacagatta
    10981 ctgtgccgtt atttgaacgg ttcaaatcca ctttattgtg taaattagag caaactaccg
    11041 gcacaatcgg cacgccggca gaaatggcta aatggaatgc accggtttta aatggcagta
    11101 aaccacgccc acggctacga gtaccttccg ggaacatcca caccgacaca ttgcgttctt
    11161 tcacgatttg ccctgcttta ttcattgttt caatcgcact ggaacgcttt tcacggtgaa
    11221 taaaaatatt gccggttgcc cagtaaacca aaccgaaaaa cggaatccaa atcaggcttt
    11281 ttttgccgat actcaccgtc ttttctgcca ccattgagga aatcgttacc atatcgtaat
    11341 tgttttgatg attgccgata tagacaaccg gatagttaat ttccggcttt ttgcgggtaa
    11401 ttaattccaa cccgactaat ttatgcaaag caccaaacca acgagctacc acacccacgc
    11461 tacttgggtg acgtaaacgc agtaacgcat aaatagtgcc aaaaatagaa atgaaaatag
    11521 cggcaagggc aacaattaaa atacgaaaaa tttttaacat aatggaataa ccttaaaaat
    11581 aaattgtcta ggagtatagc aaaataaggt tattttctaa aggctatcca cattaaattg
    11641 atagtttcct attttgcaaa aaatcggtat atttaaaccg cttgtttatt tgataaggag
    11701 aaaaaaatga gtaaagtgac tttagcagga agcccgattg atgttgcagg cacatttcca
    11761 caaaaaggcg atgtggttgc cgattttacc ttagtcaaca gtgatttaag tgatgtttcg
    11821 ctttccgatt ttgatggcaa acgcaaagtg ttaaatattt tcccaagtat tgacaccggc
    11881 atttgtgcca cttctgtgcg tgtgtttaat caaaaagcgg ctgatgtagc gaatacggtt
    11941 gtcctttgta tttcagcgga tttacctttt gcccaagcac gtttctgtgg agcagaagga
    12001 attgaaaatg ccaaagtatt atccagtttc cgtcatcgtg atttacacaa caaactgggg
    12061 gtagatatta tttcaggtcc gttggcaggc ttaacttcac gttcagtaat tgtgttagat
    12121 gaaaacaaca aggtattaca cagcgaatta gtgccggaaa ttaaacaaga gccggattat
    12181 gaggcggcgt tagcggtatt ataatttgca gaattatgct ggaaaataac cgcttgtaaa
    12241 gcaacaaaaa gcccgttgat tcaattcaac gggctttgtt tttagtgatt atttcttacg
    12301 agagtgtaag ccttttttct caaggttacg gtaaatcaac cattgctgtg caatcgtgat
    12361 taagtttgag gttaaccagt aaagcactaa gcctgatggg aaccataaga agaacacggt
    12421 aaagataacc ggcataaagg tcattacttt ttgttgtacc gggtcagcta ccggtgttgg
    12481 cgacattttt tgtaacaaga acatcgaacc acccattaat aaaggcaaaa tgtagtatgg
    12541 gtcttgtgcc gataagtctt gaatccagcc gaagaaaggt gcgtggcgta attctaccgc
    12601 ttccataaat gtccaatata aagcaatgaa aatcggcatt tggattaaaa ttggtaagca
    12661 gccacccatt gggttcactt tttcttctct gtagagtttc atcatctctt ggctcatacg
    12721 ttggcggtcg tcgccgaaac gttcacgcat ttcagtaatg cgaggttgta acatacgcat
    12781 ttttgccatc gaggtgtatt gtgctttggt taatgggtaa agaatggttt tcactacaat
    12841 agtgacaccg ataattgcca agccccagtt gcttacgatt ttttgaattg cggttagtaa
    12901 ccagaaaagc ggtttagcga taaaccacgc ccagccgtaa tctacggtta agtctaggtg
    12961 atttgctgat tcgcccattt ctttctgatc tttagaacct gtccaaagtt tgctatttaa
    13021 attagcctct gaatttggcg caatcgtagt taaagggcca cggtaaccga tagttgctac
    13081 cccattattg gtgcgtgaat aaaggctgtt atccgcatct tggtttggca cccaagcaga
    13141 cacgaaatag tgctgtaata ccgcaatcca acccgctttg gtgtccacgc ttaagttggc
    13201 tttttccata tcttggaaac tgtatttttt gtagttggtt tctgaagaat aagccccgcc
    13261 ggtgtaagtc ggcatggtta aattgccgga actttcaact atagagtgtt ttaattgccc
    13321 gtaaggctga acttcaatcg cttgtgcagt attatttttg atattgaagt ttaccccaac
    13381 atcgtagcta ccacgtttta gcgtgaaagt tttggtgtaa accacaccct ctttttcaaa
    13441 ggttaatggt acagaaattt cattttgccc ttcggctaat ttgaagctat ctgccgttac
    13501 cgcatattgt gggcgaccgg cattggtatc aatcccgttt ttacccacta aaccgctttg
    13561 agcaacgtag attttgtcgc cgtcttgctg taatagttta aatggcgtgt tagagtgtaa
    13621 ttcagcattg tgttttaaca aatctgagcc gatgacatca ccgcctaagg tatcaatagt
    13681 cagacgtaat acatcgcttt ccacggtaat ggttttacct tgcgtgatgc tatctgcgat
    13741 tggattattg gcattggaag cagacggaag atcacccgct tgttgggttt gtgctgccac
    13801 ttgagcttgt ttttgtgctt gaatttcagg atcaaaatct tgttgccatt gtgtaaaaat
    13861 caaaatagac acaagaaata aacccattag cagtaagcca cgattattca tgttggaatt
    13921 ctcttgttag taatggataa aaagaaaggt attttataat aggttagctt gttttccaaa
    13981 cgccttttat gaacaagcgg tcggattttc caagtttttt gcaaaatttt cggagaattt
    14041 gaccgcttgt ggagaataag aaactagcgt ttatctaagg ttttggtgga aaggcgagca
    14101 actgcacaca ggttaccttg ttcgtcttta atgtcgatat tccaaacctg tacttcacgc
    14161 cctaatttca gcggtgtagc tttggcaatc gcttttgtgc ctgccggaat cgattttaaa
    14221 tggctgatgt ttagctccat tcccaccgca atttgatggg gttcacacac cattaacgcc
    14281 cctgcattgg cagtagtttc cgcgagtgct gccgatacac cgccgtgcaa tacgccaaac
    14341 ggctgttgag tgcgttcgtc cacctgaagc tgtgcttcaa tccaatcttc accgatagcg
    14401 gtaaattcaa tccctaagtg tgacaccgcc gatttttggc tgagtgtgtt taattgttca
    14461 caagttgctg tttgcttcca aatggtcatt attatttcct gtctaataaa aaagctgtct
    14521 atttagacag ctttcattat ctctttgagc gaaacatact acgccaatag tacattgttt
    14581 ggtcgcccat attaccttaa gccatatagc actaaggagg tgatttatgt gagaaaatca
    14641 gaagttttct ttctggttgc gttgctaata ttattagcaa cttccgctag cattaaagta
    14701 ctcaccatac ttgatgtgct agtttggtta ttcgctagat aacctaaaat cagacagagg
    14761 caggctggtt acctgcctcg ctttttattc taagtacttt taggttacat ttcaacctta
    14821 aatcacgtcc agcaacgctt gaattgggtg tttaatgcct tgttgttcaa aacgtttgac
    14881 ttgcgagcgg caggagtagc cggttgctag gcaacgctca agcggtttat tttttaattt
    14941 aatttgccat gattgctgat aaatcgcttt cgacatttca acgtgtttgg tttcgtgtcc
    15001 gaacgtgcct gccattccac agcaaccgac attttcattg agtaaggttt caccaaaatg
    15061 ggtgaaaata gcttgccact ctttcattga gcttggcaag gcggtggatt cggtgcagtg
    15121 agcaaataaa taccacggca agcggtcgga atttgccgat tttttgcaat tttccagctc
    15181 gccgttttta atcacttccc ttaaccattc gtgtgccaat aagactttga aatccccccg
    15241 agcttctttg aggatctctt tgtattcttc acgataaagc aaagttaagg caggatcgac
    15301 agccaccatc ggtagcccca atttcgccac acggtttaaa aaatcggctt ggtttttcgc
    15361 tgttttcgca aatttatgca aaaagccttt aacgtgttgt gctttaccgc ttggcttgaa
    15421 tggcaacaca atcggcttaa agcctaattt tttaatgaga gcgataaagt ctgccaccac
    15481 tttggcatcg taataagagg taaacggatc ttgcacaata aacaaggttt tgcaattttt
    15541 tgcagaaaaa tcaccgcttg tagcttgttg ttcaaggctt tctaagctct cgccttggta
    15601 gccgacttcc accaactgat gttgcagatt tggcactgac aatgccggca aataggtcat
    15661 tccaatggtt ttgtttgcag ctttttcggc aaaagttgag gtgctgaaaa agttaaaaaa
    15721 acgtggttgt ttcgccatta aaggggcgat aaattctaag tttgagacca cataatcttt
    15781 cagtggtcgc aaatagcggc tgtggtaaag ctcgttaaat tgcgatctga acgtcggtac
    15841 gtcaattttg attgggcatt ggctggcaca ggctttgcag gcaaggcagg tgtccatcgc
    15901 cgctttgact tcgtgtgaaa aatcatactc tttgttttta ttgagcgtgt tgcgaatttt
    15961 tgcaacaaaa tcagctaatt tgaccgcttg tttgcgaggt ttgaagatca aatcgtccgg
    16021 cgaaacgttt tgttcggtaa gtaatctgag ccattcacgc acaagagtag cccgcccttt
    16081 cggtgagtaa agacggttgc ccgagacttt cattgaaggg cacatcgtgc tgtgtacatc
    16141 aaagttaaaa catagcccgt tgccgttaca attcattgct cctttaaatt cttctcgcac
    16201 ttggattgga atttggcggt caaaatcggc tcgcatttgt gagtcaatcg ggtagagcga
    16261 ggtttcgctt tctaatggtg tacaaatttt acctgggttc aagcgattgt acgggtcaaa
    16321 taaggttttg atgtaacgga gttcttgcca caaagtttcg ccaaagaaac gttcgccgta
    16381 gtaagaacgc atacctttgc cgtgttcgcc ccaaatcaag ccaccgtatt tggcggtgag
    16441 ttcgactact tggtcggaaa tttgcttaaa ggtttccact tgggctttgt cgcataagtc
    16501 aagagcaggg cgaacgtgta gcacgccggc atcaacgtgg ccgaacattc cgtaaggcag
    16561 attatagcga tctaataaag ctcgaaattc cacgatgtaa tcggcaaggt tttccggtgg
    16621 cacagcggtg tcttctacaa aggcgatcgg ttttgcccag cctttggcat tgcctagcag
    16681 gcctacggct tttttccgca ttgcgtagat tttctcgata gaatttacat cactcgtgag
    16741 ttggtagccg ataatcccgg cttcattatt tgccattttt tgatcaaggc tttggcagag
    16801 tgctttcact tgggtttcaa tttgagtctg atcgcttgag gcatattcaa caatgttaat
    16861 ccctaaaatc gggttggctg ggtcttcggt taataaatct gacaccgaat gccagacgat
    16921 atcttgcttg gcaagattga gcactttgga atcaaccgtt tccaccgata aggcttttgc
    16981 ctctaacata aaaggagcgg agcgtaaggc ggcatcaaag gaattatatt taatattaat
    17041 taaggtgcga tatttgggaa tcggcagtaa attcagtttg gcttcgcaaa taaaggcaag
    17101 cgaaccttca gaaccggtta aaatacgggt aaggttaaat tcgctttcac catggttaaa
    17161 cacatttttt aaatcatagc cggtaataaa acggttaagc tgaggcagtt cgttcagcac
    17221 tttggggcgt aatgttttgc aacggttgaa aatttcacgg tgcaaggttt tgccgagagc
    17281 ggagagattt aacccttcaa tatgtgcaaa aaaatcggca gatttgaccg cttgtgtctc
    17341 taaaatatcg ccgttaataa gcacagattt gatggcaaga atatgatcag atgttttgcc
    17401 atattgcaaa gaaccttgcc cagaggcatc ggtgttgatc attccgccta aagtcgctcg
    17461 gttactggta gaaagttcgg gggaaaagaa aagtccatgt ggttttaaaa attgattgag
    17521 ctggtctttc accacgccag cctgcactcg aacccaacgc tcttccacat tcagttccaa
    17581 aatctgattc atatggcggg agagatcaac aataatatta ttgttaagag attgcccgtt
    17641 agtgcctgtg ccaccgcctc gtggagtaaa agttaaatgt tgatattctg gcttttgggc
    17701 aagtttggtt agaattacga catcagaaac ggatttcgga aacagaatag cttgcggaat
    17761 ttgctgatac acgctgttgt ctgttgccag tgaaagccta tctgcataat ttgatgcaat
    17821 ttccccacta aaatgctgat tgacgagttc agttaaatag gattgggtgg ctttatccag
    17881 ttgcggtact tcagagagtc taggtatcat aagctgtgtt tggtttttta taataaaagc
    17941 actaaatttt gcttatctta gcaatttttc taaaaattgg gaatggaata tcaatttgat
    18001 taaatagtgt tcgaaaaatg gttttttggt taaaatatag acaaattatt acgtttctat
    18061 acatttcatc aggaaaaaac gattgatttt tcgaaaatga aaccacataa tgacaatatt
    18121 cttgctcaat ctaaattaga acaagaatgt tattcagaag ataaatttta tac
//
LOCUS       DANMBQ010000038        17625 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.038, whole genome shotgun sequence.
ACCESSION   DANMBQ010000038 DANMBQ010000000
VERSION     DANMBQ010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17625
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.038"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..502
                     /locus_tag="PXE92_001126"
     CDS             <1..502
                     /locus_tag="PXE92_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760386.1"
                     /translation="NKKLDGLWSTNTNYIIDYKLLNIPEEQPNVIIEFMVNKDDNSIL
                     GEMTSTALCELIPLTWSFRLESPKPTLLNLIFDRELKLSYLVSGGYTELSTFKIKEIN
                     SNLGTLTLTTQEDKTGIFPPTIKLINFSSNIEDDIKEIEQSCLNSRKQLWEKRRKMQE
                     EQKIPN"
     gene            619..3483
                     /locus_tag="PXE92_001127"
     CDS             619..3483
                     /locus_tag="PXE92_001127"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDL5760387.1"
                     /translation="MTKQFTMEDRFNPSAVEQALYQHWESQGYFKPSEDINAPSYCIA
                     IPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGNNTLWQTGTDHAGIATQMVVERKIAA
                     EEGKTRHDYGREAFINKIWDWKAYSGGTISQQMRRLGNSIDWDRERFTMDEGLSNAVK
                     EVFVRLHEEGLIYRGKRLVNWDPKLHTAISDLEVENKESKGSLWHFRYPLANGAKTAD
                     GLDYLVVATTRPETMLGDTAVAVHPEDERYQALIGKSVILPLANREIPIIADEYVDRE
                     FGTGVVKITPAHDFNDYEVGKRHGLPMVNVMTLNADIRAEAEIIGTDGKPLSDYTAPI
                     PADYQGLERFAARKKIVADFEALGLLDQIKPHDLKVPYGDRGGVPIEPMLTDQWYVSV
                     KPLAEVATKAVEDGEIQFVPKQYENLYFSWMRDIQDWCISRQLWWGHRIPAWYDEQGN
                     VYVARDEAEVRAKHNLPADLPLKQDEDVLDTWFSSGLWTFSTLGWPEQTKELKMFHPT
                     DVLITGFDIIFFWVARMIMFTMHFIKDENGKPQVPFKTVYVTGLIRDEQGQKMSKSKG
                     NVLDPIDMIDGISLDDLLEKRTGNMMQPQLAEKIAKATRKEFAEGIVAHGTDALRFTL
                     TALASNGRDINWDMKRLEGYRNFCNKLWNASRYVLTNDKLDLSEGDVEFSLADRWIES
                     QFNRTVETFRTALSQYRFDLVANAIYEFTWDQFCDWYLELTKPIFFKGTDVQRRGASR
                     TLVNVLEKLLRLIHPVMPFITEEIWQKVKGFVGIEADTIMLQKFPQFDPLAIDETAES
                     QINFIKEVIVAVRNIRAESNIAPSKGLDLIARNFSADEVSILNANEVLLKSMAKLDSV
                     KVLENGENAPLSVAKLVANGEILIPMAGFINKEAELARLTKEMDKLKGEVARIEGKLS
                     NEAFVAKAPEQVIAKEREKMQEYLSGLEKLQVQYQEIEAL"
     gene            complement(3554..4147)
                     /locus_tag="PXE92_001128"
     CDS             complement(3554..4147)
                     /locus_tag="PXE92_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL5760388.1"
                     /translation="MLTDQDIFNRYQTKKSEFEKQADISLIGHSLFDMWGDMENGTPN
                     LAGKTVANLGLSGTSTRQYLDVITRQERIQHVGDNVFIFLGVNDIVKEPDYSPKQVLE
                     WIGEIVDSLRKINPNANFFLLEATPVNNITTTNNAAIKELNAYFEANIPSDLTYVKTW
                     EYFADKEGNLDLTLCHDGLHFTQAGYDRLEAILTKHL"
     gene            complement(4282..5736)
                     /gene="gnd"
                     /locus_tag="PXE92_001129"
     CDS             complement(4282..5736)
                     /gene="gnd"
                     /locus_tag="PXE92_001129"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HDL5760389.1"
                     /translation="MSQKGDIGVIGLAVMGQNLILNMNDNGFKVVAYNRTTSKVDEFL
                     EGAAKGTNIIGAYSLEDLAAKLEKPRKVMLMVRAGEVVDQFIEALLPHLEEGDIIIDG
                     GNSNYPDTNRRVKALAEKGIRFIGSGVSGGEEGARHGPSIMPGGDESAWQYVKPIFQA
                     ISAKTDKGEPCCDWVGRDGAGHFVKMVHNGIEYGDMQLICEAYQFLKDGLGLSYDEMH
                     EIFKEWKNTELDSYLVDITTDILAYKDEDGEPLVEKILDTAGQKGTGKWTGINALDFG
                     IPLTLITESVFARCVSAFKDQRVAASRLFNKEIGKVEGDKKVWVEAVRRALLASKIIS
                     YAQGFMLIREASEQFGWDINYGNTALLWREGCIIRSRFLGNIRDAYEANPYLVFLGSD
                     PYFKDILENCLADWRKVVAKSVEIGLPVPCMASAITFLDGYTSARLPANLLQAQRDYF
                     GAHTYERTDKARGEFFHTNWTGRGGNTASTTYDV"
     gene            complement(5819..6508)
                     /locus_tag="PXE92_001130"
     CDS             complement(5819..6508)
                     /locus_tag="PXE92_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDL5760390.1"
                     /translation="MKTLGILGGMSAESTVSYYLDINRSVNKVLGGNSSAKILISSVN
                     FEEIVQCQKQGNWQAAAEILSEQARLLEQAGAEGILLATNTMHKIADQISSHISVPFL
                     HILDCVAEAISAQGLQKVALLGTKFTMSDNFYKDGLLERGITSIVPDEETQQEIHRII
                     FEELCLGKITESAKAFYLQTIQQLSEQGAEGVILGCTEIGLLINQNDNPLPFFDTAAL
                     HSQMAVEFILG"
     gene            complement(6518..7405)
                     /locus_tag="PXE92_001131"
     CDS             complement(6518..7405)
                     /locus_tag="PXE92_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6N domain-containing protein"
                     /protein_id="HDL5760391.1"
                     /translation="MNPIQLIEPNINSKIFTIRGEQVMLDVHLAELYQVDTRTFNQAV
                     KRNEERFPDIFRFQLTENEWLSLRSQFVILNENSGRGQHRKYLPYVFTEQGIAMLSAV
                     LRSEVAVQVSIKIMQAFVQMRHLLQTNSGLVQRLESVERKQLEMSGQLEQVFQSLEGN
                     KPKMQGVFFEGETFNAYQFVTELVRGAKSSLILIDNYVDDTVLTLFTKRSHNVSVTIY
                     TKQISKQLALDLEKYNSQYAHINVKIFDKSHERFLIIDEKELYHIGASLKDLGKKWFA
                     FSKMDLSMSRILEKLAENQ"
     gene            complement(7581..8279)
                     /gene="pgl"
                     /locus_tag="PXE92_001132"
     CDS             complement(7581..8279)
                     /gene="pgl"
                     /locus_tag="PXE92_001132"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HDL5760392.1"
                     /translation="MNKVIFPTAQAAVEQIAKEFIEYSHQNRPVHISLSGGSTPKLLF
                     KTLAQAPFNTEIQWQNLHFWWGDDRMVAPTDPESNYGEVQKLLFDHIDIPSENIHRIR
                     GEENVEQELARFSAELTACVPNLAFDWIILGMGTDGHTASLFPHQTDFNDQNVAVIAK
                     YPETGQIRISKTASLIEKAKRITYLVTGASKAEILKEIQTTPAENLPYPAAKIQAENG
                     VTEWYLDSEAANLL"
     gene            complement(8419..9906)
                     /locus_tag="PXE92_001133"
     CDS             complement(8419..9906)
                     /locus_tag="PXE92_001133"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HDL5760393.1"
                     /translation="MNAENSCIVIFGASGDLTFRKLIPALYNLYKIGRLGEHFSVLGV
                     SRSELTDESFRQKMRDALVKFEKASGEELDKFCEHLYYQAVNTSDAVDYAKLLPRLDE
                     LHDKYQTAGNTLYYLSTPPSLYGVIPECLAAHGLTTEEFGWKRIIVEKPFGYDIETAK
                     KLDVQIHKCFEEHQIYRIDHYLGKETVQNLLVLRFSNGLFEPLWNRNFIDYVEITGAE
                     SIGVEDRGGYYDGSGAMRDMFQNHLLQVLAMVAMEPPAIINANSMRDEVAKVLYCLHP
                     LTEEDVKHNVVLGQYARGTVDGKEVPAYLEEKGVPADSNTETFMAVKCKIDNWRWAGV
                     PFYVRTGKRLPTRVTEIVIHFKTTPHPVFSQNAPENKLIIRVQPDEGISMRFGLKKPG
                     AGFEAKEVSMDFRYSDLSSSSSLLTAYERLLLDALKGDATLFARTDAVHACWKFVQPI
                     LAYKANRGRVYEYESGTWGPTEADKLIARHGKVWRKPSGTMKKKV"
     gene            complement(9981..10799)
                     /gene="cysQ"
                     /locus_tag="PXE92_001134"
     CDS             complement(9981..10799)
                     /gene="cysQ"
                     /locus_tag="PXE92_001134"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HDL5760394.1"
                     /translation="MQTLTQPLLENIINIAKAAGEQLKQLYARSVAIKIKADCTPVTE
                     ADLIISQFLTERLKQLTPDIPVLSEEFCDIPFAERQQWQEYWIIDPIDGTQQFINRTG
                     QFSVVIALVQKREGRNQPVLGVIHAPILGKTYFSMEGSGSFLQENGEIRPLVKPKRAE
                     NALLIVTVGSDLHAEQAKNAISAPQIECVKYGSGSLKAGLVAEGKADCYIRFGDTGEW
                     DTAVAEVLLSEMGGKIFDFNFSPLTYNQRESLINPYFVMVADGSIDWDKIFLFK"
     gene            complement(10813..11355)
                     /gene="nudE"
                     /locus_tag="PXE92_001135"
     CDS             complement(10813..11355)
                     /gene="nudE"
                     /locus_tag="PXE92_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HDL5760395.1"
                     /translation="MIKQLPEILNIKTVAKSRIFEVQAVDLRFSNGEERTYERLTPNR
                     RSSVMVIPIQNNELIFVKEYAVGSERYELGFPKGIVDAGEEPIESANRELQEEIGFGA
                     KKLDFLRSLYSSPSHMYGLMHLFLAQDLYPSKLEGDEPEPLEIVRYPLDKIDQLLADP
                     DFAEARNLSALFMLREYLKK"
     gene            11443..11859
                     /gene="hslR"
                     /locus_tag="PXE92_001136"
     CDS             11443..11859
                     /gene="hslR"
                     /locus_tag="PXE92_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HDL5760396.1"
                     /translation="MKNKHEKEQNDAEVRLDKWLWAARFYKTRSIAKAMIEGGKVHYN
                     GQRAKVSKAVEIGAIIKLRQGNEEKEVEVLALSDQRRGAPEAQLLYSETEKSIKHREA
                     MAFARKANALSMPHPDRRPNKKERRDLIKFKEQEFS"
     gene            12103..12996
                     /gene="hslO"
                     /locus_tag="PXE92_001137"
     CDS             12103..12996
                     /gene="hslO"
                     /locus_tag="PXE92_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HDL5760397.1"
                     /translation="MNYTKDNDKLYRYLFKDRAVRGEWVRLNNTFTETLNTHHYPKAV
                     QNLLGEMLVATSLLTATMKFNGNITVQIQGDSPLKLAVVNGNDQQQLRALARVQADIA
                     DTASLAEMIGNGVLVISIIPTDGERYQGVIALDKPTIRECLEDYFARSEQLQTHLVIR
                     TGEFEGKAVAGGMLLQIMPDGTGSRDDFEHLATLTETVKDEELFGLEAEELLYRLYHE
                     EQVEVYPPQDTEFKCGCSRERSGSALLLVPAEEIEEMLEEKQGVIDMQCECCGTQYFF
                     DKAAIEGFKEETEKLSKLGLN"
     gene            complement(13070..13708)
                     /locus_tag="PXE92_001138"
     CDS             complement(13070..13708)
                     /locus_tag="PXE92_001138"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDL5760398.1"
                     /translation="MQNKIDWQKVDGLLPVIVQNAQTCEVLMLGYMNQQALEKTLAEK
                     RVTFYSRTKQRLWTKGETSGNFLNVVDMSLDCDNDTLLILANPIGETCHTGAESCFHQ
                     FEQEQPDWIFFSKLERMIAERKNADPESSYTAKLYAKGTPKIVQKVGEEAVESVIAAM
                     KNDREELVGEVADLMYHLTVLLHNADLSWAEINAKLKERHKGIGLHPEGSNK"
     gene            complement(13736..14122)
                     /locus_tag="PXE92_001139"
     CDS             complement(13736..14122)
                     /locus_tag="PXE92_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5760399.1"
                     /translation="MIKITALDHLVLTVADMQKTIDFYTTILGMQEITFGDNRKALLF
                     GTQKINLHQKGAEILPNAQNADCGTADLCLLTVTPLQEVIYVLQRHQVEILEGGIVPR
                     TGAVGKIESVYCRDPDGNLIEISLYV"
     gene            complement(14119..14892)
                     /gene="hisF"
                     /locus_tag="PXE92_001140"
     CDS             complement(14119..14892)
                     /gene="hisF"
                     /locus_tag="PXE92_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDL5760400.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAQRYAQEGA
                     DELVFYDITASSDSRTVDKSWVERVAQVIDIPFCVAGGIKTIADAEQIFAFGADKISI
                     NSPALANPELITELAKRFGVQAVVVGIDSWFEAETGKYWVNQYTGDEKRTRQTEWQLL
                     DWVEEVQKRGAGEIVLNMMNQDGVRNGYDLVQLKKVREVCQVPLIASGGAGEMVHFRD
                     AFIEANVDGALAASVFHKQIINIGELKEYLAKEGVEVRR"
     gene            complement(14874..15623)
                     /gene="hisA"
                     /locus_tag="PXE92_001141"
     CDS             complement(14874..15623)
                     /gene="hisA"
                     /locus_tag="PXE92_001141"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDL5760401.1"
                     /translation="MQKSIIIPALDLIDGQVVRLHQGDYAKQTTYADDPIAQFADYLA
                     QGAEQLHLVDLTGAKNPAQRQTALIGKIIRETHCKIQVGGGIRTEQDVADLLAVGANR
                     VVIGSTAVKEREMVKGWFKKYGAEKFVLALDVNIDAIGQKIIAMSGWQEASGVSLEEL
                     IEDYQTVGLQHVLCTDISRDGTLAGSNVDLYREICAKYPEIQFQSSGGIGSLADIKAL
                     CGTGVAGVIVGRALLEGKFNVAEAIECWQNG"
     gene            complement(15793..16638)
                     /locus_tag="PXE92_001142"
     CDS             complement(15793..16638)
                     /locus_tag="PXE92_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor protein"
                     /protein_id="HDL5760402.1"
                     /translation="MNEIKLFENSQIRSVWDSEKEEWFFSVVDIIEVLTQSSNPRRYW
                     SDLKRKIKDEEGGIELYEKIVQLKLKAPDGKMRETDATDLQGIFRIIQSVPSPKAEPL
                     KMWLAEVGKERIDEIIDPELTIDRALATYLKKGYSREWINQRLQAIQVRKELTDTWQD
                     HGVQVGREFAILTNEITQAWSGMTTRQYKDFKGLKKESLRDNMTTTELVLNMLAEAAT
                     KDIAQISHPQGLEENKTVAKRGGNVAKVARESLEAETGKPVITQQNAIDFAAVIEQVA
                     KQVKK"
     gene            complement(16737..17330)
                     /gene="hisH"
                     /locus_tag="PXE92_001143"
     CDS             complement(16737..17330)
                     /gene="hisH"
                     /locus_tag="PXE92_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDL5760403.1"
                     /translation="MTNLTIIDTGCANLSSVKFAFDRLGIRAEISRDLNKIQSADKLL
                     LPGVGTAAAAMAILHDRRLIDTIRNATQPMLGICLGMQLMTDFSHEGDVATLNLMSGK
                     TERLPECGLPLPHMGWNKVQYQADHPLFHDIEQGNHFYFVHSYGVLPNENTIATCDYG
                     VPFSAAIASQNFYGVQFHPERSGEAGAKLLRNFVENV"
BASE COUNT         4928 a         4041 c         3633 g         5023 t
ORIGIN      
        1 taataaaaaa ctggatggtt tatggtctac aaatacaaat tacattatcg actataaatt
       61 attgaacata cctgaagagc aaccaaatgt tatcattgaa tttatggtta ataaagatga
      121 caattcgatt ttaggggaaa tgacttcaac agctctgtgt gagttaatac ctctaacttg
      181 gagttttaga ttggaaagcc ctaagccaac attattaaat cttattttcg atagagagtt
      241 gaaattgagt tatcttgtta gtgggggata taccgagcta tcaacattta aaattaaaga
      301 aattaacagt aatctaggaa cactaacatt aactacgcaa gaagataaaa ccggtatatt
      361 tcctccgaca atcaaattaa tcaatttttc atccaatata gaagatgata ttaaagagat
      421 tgagcaaagc tgtttaaata gccgaaagca attatgggaa aaacgaagaa aaatgcaaga
      481 ggaacaaaaa attcccaatt aatcttttag ttgaccttaa tttaaataac taattaccta
      541 taaaagcatt tacggcaaag atctttttta taagattaag ctagtgaaaa aattattaaa
      601 caagagaaaa caaaaccaat gacaaaacaa ttcacaatgg aagaccgttt taacccttcc
      661 gctgtagagc aagcgctcta ccaacactgg gaatcgcaag gctattttaa gccgagtgaa
      721 gatattaatg caccgagcta ctgtatcgct attccgccgc cgaatgtgac ggggagtttg
      781 catatggggc acgctttcca gcaaaccttg atggatacgc tgattcgttt taaccgtatg
      841 gagggcaaca ataccctttg gcaaacagga actgaccacg cagggattgc cactcagatg
      901 gtggtggagc gtaaaatcgc agcggaagaa ggtaaaaccc gccacgatta tgggcgtgaa
      961 gcctttatca acaaaatctg ggattggaaa gcctattcgg gcggcacgat cagccagcaa
     1021 atgcgtcgct taggcaactc gattgactgg gatcgtgagc gttttacgat ggacgaaggc
     1081 ttatccaatg cggtaaaaga ggtgttcgtt cgcttgcacg aagaaggctt gatttaccgt
     1141 ggcaaacgcc tcgtaaactg ggatccgaaa ctgcatactg cgatttctga cttggaagtg
     1201 gaaaacaaag aaagcaaagg ctcgctgtgg catttccgct atccgctggc taatggtgca
     1261 aaaaccgcag acggcttgga ttacttagtg gtggcaacga cccgtcctga aacgatgttg
     1321 ggcgatactg cggtggcggt tcaccctgaa gatgagcgtt atcaagctct gattggcaaa
     1381 agcgtaatcc taccgcttgc caaccgtgaa atcccgatta ttgccgatga gtatgtggat
     1441 cgtgagttcg gtacgggcgt ggtaaaaatc acccctgccc acgatttcaa cgactacgaa
     1501 gtgggcaaac gccacggctt gccgatggtg aatgtgatga ccttaaatgc cgatattcgt
     1561 gcagaggccg aaattatcgg cacagacggt aaaccgcttt ccgactacac cgccccaatt
     1621 cctgccgact atcaaggctt agagcgtttt gccgcgcgta agaaaattgt ggcagatttt
     1681 gaagctcttg ggctgttaga tcaaatcaaa ccacacgact taaaagtgcc gtatggcgac
     1741 cgtggtggcg tgccgattga gccgatgctg accgaccaat ggtatgtgtc tgtcaaacct
     1801 ttggcggaag tcgcgaccaa agcggtggaa gacggcgaaa tccaattcgt gccgaaacag
     1861 tacgaaaacc tgtatttctc ttggatgcgt gatattcaag actggtgtat ctctcgccaa
     1921 ttatggtggg gacaccgcat tccagcgtgg tatgacgagc agggcaatgt ttatgtagca
     1981 cgagatgaag cggaagtgcg tgcgaaacac aacttacctg cggacttacc attaaagcaa
     2041 gatgaagacg tactggatac ttggttctcg tctggtctat ggacgttctc aacgttaggc
     2101 tggccagaac aaaccaaaga actgaaaatg ttccacccga ccgatgtgct gattaccggt
     2161 tttgacatca tcttcttctg ggtggctcgt atgattatgt tcacgatgca cttcatcaaa
     2221 gatgaaaacg gcaaaccgca agtgccgttc aaaaccgtgt atgtaacagg cttgatccgt
     2281 gacgagcaag ggcagaaaat gtcgaaatcg aaagggaacg tgttagaccc gattgatatg
     2341 attgacggca tcagtctcga cgatttgctc gaaaaacgta caggtaatat gatgcagcca
     2401 caactggcag aaaaaatcgc taaggcaacc cgcaaagaat ttgccgaagg gattgtggca
     2461 cacggcacag acgctctgcg tttcaccctc accgcccttg ccagcaacgg tcgagacatc
     2521 aactgggata tgaaacgttt agaaggctac cgcaacttct gcaacaaact gtggaatgcg
     2581 agccgttatg tgctgaccaa tgacaagttg gatttaagcg aaggcgacgt ggaatttagc
     2641 cttgccgatc gttggattga aagccaattc aaccgcacgg tggaaacttt ccgcaccgca
     2701 ctcagccaat accgtttcga cttagtggca aatgcgatct acgaatttac ttgggatcaa
     2761 ttctgcgact ggtatttaga gctgaccaaa cctattttct tcaaaggcac agatgtacaa
     2821 cgccgtggcg caagtcgcac gctggtgaat gtattggaaa aactcctgcg tttaatccac
     2881 ccagtaatgc cgttcatcac cgaagaaatc tggcagaaag tgaaaggctt tgtaggtatt
     2941 gaagccgata ccattatgtt gcaaaaattc ccacaatttg acccgcttgc cattgatgaa
     3001 accgccgaaa gtcaaatcaa ctttatcaaa gaagtgattg tggcggtgcg taacattcgt
     3061 gcggaaagca acatcgcacc aagcaaaggt ttagatttaa tcgctcgtaa tttctctgcg
     3121 gacgaagtct ctattctcaa cgctaacgaa gtgttgctca aatcgatggc aaaacttgat
     3181 agcgtgaaag tgctggaaaa tggtgaaaat gcaccgctat cggtagcgaa actggtcgca
     3241 aatggtgaga tcttgatccc aatggcaggc tttatcaaca aagaagctga gctagctcgc
     3301 ctcaccaaag agatggataa acttaaaggt gaagtggctc gcattgaagg caaactttca
     3361 aacgaagcct ttgtcgccaa agccccagag caagtcatcg ccaaagagcg tgaaaaaatg
     3421 caagagtacc tgagtggatt agagaaattg caggtgcagt atcaagagat tgaagcactg
     3481 taattaacta acaagcggtc aggatttgga aattttttgc taattcagac cgcttgctta
     3541 ttgaagcttt tcattataaa tgtttggtta aaatcgcctc taggcggtca tagcctgctt
     3601 gggtgaagtg taatccatcg tggcataaag ttagatctaa attcccttct ttgtcagcaa
     3661 aatattccca cgtttttaca taagtcaaat cagatggaat atttgcctca aaatacgcat
     3721 tgagctcttt tattgcagca ttattggtgg tggtaatatt attaaccggt gtggcttcca
     3781 atagaaaaaa gttggcattt ggattaattt tgcgaagaga atccacaatt tcgccaatcc
     3841 actctaacac ttgttttggc gagtaatccg gctcttttac aatgtcatta acgcctagaa
     3901 aaataaatac attatcgcca acgtgttgaa ttcgctcttg tcgggtaatc acatccaaat
     3961 attggcgggt gctggtgcct gataagccca aattggcaac tgtttttcct gctaaattcg
     4021 gcgtgccgtt ttccatatcg ccccacatat caaacaggga atgcccaata agggaaatat
     4081 ctgcctgttt ttcaaattct gatttttttg tttggtagcg attaaaaata tcttgatcgg
     4141 taagcatagg ttctccttaa atataaatga aaaatcgctc cattattata caaacttgta
     4201 aacattcact ccaagatatt ttgaagaaaa atccaataaa aaagccactt aatatcgaat
     4261 taagtggctc aaaaagatta attacacatc ataagtggtc gatgcggtat taccgccacg
     4321 tcctgtccag ttggtgtgga agaactcacc gcgagctttg tctgtacgct cataagtatg
     4381 agcaccaaag tagtcacgtt gtgcttggag taagtttgcc ggtaaacgtg ccgaggtgta
     4441 gccatctaag aaggtaatgg ctgacgccat acaaggtaca ggtaaaccga tttccaccga
     4501 ttttgccact actttacgcc aatctgccaa gcagttttcc aaaatatctt tgaagtatgg
     4561 gtctgagcct aagaacacta aatatgggtt ggcttcatac gcatcacgaa tgttgcctaa
     4621 gaaacggctg cggataatac aaccttcacg ccataatagg gcggtattgc cgtagttgat
     4681 gtcccaaccg aattgctcag aagcctcacg aatcaacata aagccttgtg cataagagat
     4741 gattttggaa gcaagtaacg cacggcgtac cgcttctacc catacttttt tgtcgccttc
     4801 aactttacca atttctttgt taaacaatct tgaagccgca acacgttgat ctttaaacgc
     4861 agatacgcaa cgggcgaata ccgactcggt aatcagtgtt aatggaatgc cgaaatcaag
     4921 ggcgttaata ccagtccatt tacccgttcc tttttgacct gcggtgtcga gaattttctc
     4981 taccaatggc tcgccgtctt cgtctttgta ggcaagaata tcagtggtaa tatccaccaa
     5041 atagctgtct aattcggtgt ttttccactc tttaaagatt tcgtgcattt catcatagct
     5101 taaacctaaa ccatctttta agaattggta ggcttcacaa attaactgca tatcgccata
     5161 ttcgataccg ttgtgaacca ttttcacaaa atgccctgct ccgtcacgac caacccagtc
     5221 acaacaaggc tcacctttgt cggttttggc tgaaattgct tggaaaatcg gcttcacata
     5281 ttgccacgca gattcatcac cgcccggcat aattgacggc ccgtgacgag caccctcttc
     5341 gccgcccgat acacctgagc cgataaagcg aatgcctttt tccgctaacg ctttcacacg
     5401 gcggttggtg tccggatagt ttgagttacc gccatcaatg atgatgtcgc cttcttctaa
     5461 atgtggcaga agagcctcga taaactgatc caccacctca ccggcacgca ccattagcat
     5521 cactttacgc ggtttttcca acttcgccgc taaatcttct aacgagtaag caccgataat
     5581 gttcgtgcct ttcgccgcac cttctaagaa ctcatccact tttgaagtag tgcggttgta
     5641 cgccaccact ttaaagccgt tgtcattcat attcaaaatt aaattttgac ccattacggc
     5701 gagtccaatc acgccgatat cgcctttttg tgacattgtt tgctcctatt gtttttgatt
     5761 ctatgcaagc ggtcgaattg gtaaaatttt ttgcaaattt gaccgcttgt aacatttatt
     5821 aacctaaaat aaactccacc gccatttggc tgtgtaatgc tgctgtatcg aaaaacggta
     5881 acggattgtc gttttggtta atcagcaacc cgatttcggt acaacctaaa atcacacctt
     5941 ctgcaccttg ttcactaagt tgttgaatag tctgaagata aaacgctttg gcactttcag
     6001 taatcttgcc taaacagagt tcctcgaaaa taatgcgatg aatttcttgt tgcgtttcct
     6061 catctggtac tattgatgtg ataccacgct ccaataaacc gtctttgtaa aaattatcac
     6121 tcatagtaaa ttttgtgcca aggagtgcta ctttctgcag accttgagct gaaatcgcct
     6181 cagccacaca gtccaaaata tgcaaaaacg gcacagagat atggctacta atttgatcgg
     6241 caattttgtg cattgtgttg gttgccaata aaatgccttc tgctccggct tgttctagca
     6301 atctagcttg ttcagataaa atttcagcgg ctgcttgcca atttccctgc ttttggcatt
     6361 gtacaatctc ttcaaaattg acactcgaaa ttaaaatctt ggcactgcta tttccaccta
     6421 atactttatt caccgagcga ttaatatcta aataataaga aaccgtgctt tccgcactca
     6481 ttccacctaa aatgccgagt gttttcatta atatacctta ttgattttcc gctaactttt
     6541 ctaaaatgcg gctcattgat aaatccattt tagaaaaagc gaaccatttc ttacctaaat
     6601 ctttaagtga tgcaccgata tgataaagct ctttttcatc aataatcaaa aatcgctcgt
     6661 gagatttatc aaatattttc acattaatgt gagcatattg gctgttatat ttttccaaat
     6721 ctaatgcaag ttgcttagat atttgtttcg tataaatcgt aactgatacg ttatgcgatc
     6781 gtttcgtaaa taaagttaaa acggtatcat ctacatagtt atcaattaaa atcagcgatg
     6841 attttgcacc tctcactaat tccgtaacaa actgataagc gttaaaggtt tcaccttcaa
     6901 agaaaacccc ttgcatttta ggcttattgc cttcaagaga ttgaaacacc tgctctaact
     6961 gcccagacat ctccaactgt ttacgctcta cactttctaa gcgttgtacc aaaccactat
     7021 ttgtttgcaa aagatgacgc atttgcacaa aggcttgcat aatcttaatg ctaacttgca
     7081 ccgcaacttc actacgcaat actgccgaaa gcattgcaat gccttgctcg gtaaagacat
     7141 aaggaagata tttcctatgt tggccacgcc cactattttc gtttaagatc acaaattgtg
     7201 atcttaaaga tagccattcg ttttctgtta attgaaaacg aaatatgtca ggaaatcgct
     7261 cttcattccg ttttactgct tggttaaagg ttcgagtatc tacctgataa agctctgcca
     7321 aatgaacatc tagcattact tgctcgccac gaatagtaaa aattttagag ttaatgtttg
     7381 gttcaattaa ttgaattgga ttcatctttc ttccttattc ttcagtgaag atcacttttg
     7441 tgatctcaaa ataagaaaga ctatgccaat ttttggccta taccacgagc agatttttct
     7501 gctttttcga tgaatatcac aaaaatactt tgcaacattt ttctaaaatt taaccgcttg
     7561 taaaggtcac tgattgtgac ctagagtaag ttagccgcct cactatccaa ataccattcc
     7621 gttaccccat tttccgcctg aattttggcg gcaggataag gtaaattttc tgccggagtg
     7681 gtttggattt cttttaaaat ttccgctttg cttgctcctg tgaccaagta agtgatccgt
     7741 ttggcttttt caattaaaga tgccgttttg gaaatgcgga tctgccctgt ttctgggtat
     7801 ttggcgatca cggcaacgtt ctgatcatta aaatctgttt gatgtgggaa cagtgaggcg
     7861 gtatgcccgt ctgttcccat tcctaaaata atccaatcaa acgccaagtt cggcacacaa
     7921 gcggtcaatt ctgccgaaaa tcttgcaagt tcttgttcta cattctcttc accacgaatg
     7981 cggtgaatat tttcgcttgg aatgtcgatg tgatcgaaca gtaatttctg cacttcgccg
     8041 tagttacttt cgggatcggt tggggcaacc attcgatcat ccccccacca gaaatgcagg
     8101 ttttgccatt gaatttcggt attaaacggt gcttgagcta aggttttgaa taataatttg
     8161 ggggttgaac caccggaaag ggaaatatgc accgggcggt tttgatggct gtattcaata
     8221 aactctttag caatttgttc aaccgcagct tgggcggtgg ggaaaataac tttattcata
     8281 atttgcctcg ttagatcacc cctctttaga aaagagggga gggggagatt tgattacgat
     8341 ttcaatattt cgtatgagcg tatataactt ctgccaaatc tcccctagcc cctctttgct
     8401 aaagagggga actgaaattt acactttctt cttcattgta ccggacggtt ttcgccatac
     8461 tttgccgtgt ctggcgatta atttatctgc ctcggttggc ccccaagtgc cggattcata
     8521 ttcatacaca cgcccacgat tagctttgta ggctaaaatc ggttgcacaa atttccaaca
     8581 agcgtgtaca gcatcagtac gggcaaataa ggttgcatca cctttaagtg cgtctaatag
     8641 taagcgttca taagcggtga gtaagcttga tgatgaactt aaatcagaat agcggaaatc
     8701 cattgagact tctttcgctt caaagcctgc tcccggtttt ttcaagccga aacgcattga
     8761 aatgccttcg tccggttgca cacgaataat caatttattt tccggagcat tttggctaaa
     8821 taccgggtgt ggtgtagttt taaaatgaat tacgatttcc gtcacacggg ttggtaagcg
     8881 tttaccggtt cgcacataga acggcacacc tgcccaacgc cagttatcga ttttacattt
     8941 taccgccata aaggtttcag tgttggaatc agccggcacg cctttttctt ccaagtaagc
     9001 cggcacttct ttgccgtcta ccgtgccacg agcatactga cctaacacca cattgtgttt
     9061 aacgtcttct tcagttaacg gatgcaagca atatagcact tttgcgactt catcacgcat
     9121 tgaattagca ttaataattg ccggtggctc cattgcaacc atggctaata cttgcaataa
     9181 gtggttttgg aacatatcac gcattgcccc cgagccatca tagtaaccgc cacgatcttc
     9241 aacgccgatg gattctgccc cggtaatttc cacataatca ataaaattac ggttccaaag
     9301 cggttcaaat aagccgttag aaaaacgtaa aacgagtaag ttttgtaccg tttctttacc
     9361 taaatagtgg tcgatacggt agatttgatg ctcttcaaag catttgtgga tttgtacgtc
     9421 taattttttg gcggtttcga tatcgtagcc gaatggtttt tcaacaataa tccgtttcca
     9481 gccaaactct tcggtagtta agccgtgagc ggctaaacat tccggaatca cgccatataa
     9541 acttggtggc gtggagaggt aataaagcgt gttaccggct gtttgatatt tatcgtgtag
     9601 ctcatcaaga cgaggcagca acttggcata atccactgca tcagaggtat ttacagcttg
     9661 gtaataaaga tgttcgcaaa atttatctaa ttcttcaccg cttgcttttt caaatttgac
     9721 taacgcatca cgcatttttt ggcggaaaga ttcgtcggtt aattctgaac gagaaacacc
     9781 taggacggaa aaatgctcgc ccaatctgcc aatcttatat aagttataaa gagcaggaat
     9841 taatttacga aaagttaagt caccggaagc accaaaaatg acgatacagc tattttcagc
     9901 attcatttat ttatcctatt gctaattgtt aaaattttgt tgggtgcaag attatcataa
     9961 aaattgctaa tcggaactac ctatttgaat aaaaatattt tatcccaatc tatcgagccg
    10021 tcagccacca tcacaaaata aggattaatc aaactttctc gctgattata agtcagcggc
    10081 gaaaaattaa agtcgaaaat tttgccgccc atttcactta acagcacttc tgccacagca
    10141 gtatcccatt cgccggtgtc accaaaacgg atataacaat cggctttccc ttctgccact
    10201 aaaccggctt ttagactgcc cgaaccatat tttacacact caatttgtgg ggctgaaatg
    10261 gcatttttag cttgttctgc atgtaaatcg ctgcctacgg taacaatcaa aagggcattc
    10321 tccgcacgtt tcggtttgac aagcggtcga atttctccat tttcttgcaa aaagctaccg
    10381 ctaccttcca tactaaaata ggtttttcct aatatcggag catgaataac gcccagcacc
    10441 ggctgatttc taccctcacg tttttgcact aacgcaatca ccactgaaaa ttgaccggtg
    10501 cggttaataa actgttgtgt gccgtcaatc gggtcgataa tccaatattc ttgccattgt
    10561 tggcgttcgg caaacggaat atcgcaaaac tcttccgata ataccggaat atctggtgtg
    10621 agttgcttca agcgttcagt taaaaattgg ctgataatca gatccgcttc cgtcaccggt
    10681 gtgcaatcgg ctttgatttt aattgccacc gagcgggcat aaagctgctt taactgctca
    10741 ccggctgctt tggcaatatt gataatattc tcgagtaggg gttgagttag cgtttgcata
    10801 atagctcctt gcctattttt ttaagtattc tcgtagcata aatagagcgg acaaattccg
    10861 tgcttcggca aaatcaggat ctgccaataa ttgatcaatt ttatccaacg gataacgcac
    10921 aatttccagc ggttcaggct catcgccttc caattttgat gggtacagat cttgtgccaa
    10981 aaacaggtgc attaagccgt acatatggct tggcgaactg taaagcgacc gcagaaaatc
    11041 taattttttc gccccaaaac caatttcttc ttgtaattca cggttcgcac tctcaatcgg
    11101 ctcttcacct gcatccacaa tgcctttcgg aaaacccagc tcgtaacgct ccgagccgac
    11161 cgcatactct ttcacaaaaa tcagctcgtt gttttgaatc ggaatcacca ttaccgaaga
    11221 acggcgattc ggcgtaagtc gttcgtaagt tcgctcttcg ccattagaaa agcgtaaatc
    11281 gaccgcttgc acctcaaaaa tgcgagattt cgctactgtt ttaatgttca aaatttcagg
    11341 aagttgtttt atcattttat ctcacctttt tgagttattt tagttgaaaa atctcacttt
    11401 cgctctaata tttcgactat tgttttgatt ttaaggcaga aaatgaaaaa taaacacgaa
    11461 aaagaacaaa acgacgccga agttcggcta gataaatggc tttgggcggc tcgtttttat
    11521 aaaacccgtt cgattgccaa agcaatgatt gaagggggta aagtccatta taatgggcaa
    11581 agagctaaag ttagcaaagc ggtggagatc ggtgccatca tcaaacttcg ccaaggcaat
    11641 gaagaaaaag aggtggaagt gttagccctc agtgaccaac gccgaggggc tccggaagcc
    11701 caactgctct acagtgaaac cgaaaaaagc attaaacacc gtgaggcaat ggcatttgcc
    11761 cgcaaagcga atgctctttc aatgccacac cctgatcgcc gtccaaacaa aaaagaacgg
    11821 cgggatttaa tcaaattcaa agagcaagaa tttagctaag cccttgcaat cagaaaaata
    11881 atccctatat tgaatatcct aagtaggggc gaaaaatttt tcgcccctat ataattattt
    11941 cgggcgaaca ttgattcgcc cctacagcgt tcgatttgca catttttagc cacaaaatgc
    12001 aatgcatttt gaacgttggc tttgccaacg gctccgtagg agcgaacaaa attagaaata
    12061 attttgtgag taataatcga ccgcttgcaa cgaggaatca aaatgaatta caccaaagac
    12121 aatgacaaac tctaccgcta tttattcaaa gaccgagcgg tacggggcga atgggtgcgt
    12181 ttaaacaaca cctttaccga gaccttaaac acccatcact accctaaagc agtacaaaat
    12241 ttactcggag aaatgttagt cgcaaccagt ttgctgactg caacaatgaa atttaacggc
    12301 aacattactg tgcagattca aggtgacagc ccgttaaaat tggcggttgt gaacggtaac
    12361 gaccaacagc aactccgtgc tttagcccgt gttcaggcag atattgcaga cacagcctcg
    12421 ttagcggaaa tgatcggcaa tggtgtatta gtgatttcta ttatcccaac cgatggtgaa
    12481 cgttatcaag gggtgattgc tctcgataaa ccaaccattc gtgaatgttt agaagattac
    12541 ttcgcccgct ccgagcaatt acaaacccac ctcgttatcc gcacaggcga atttgaaggc
    12601 aaagcagtgg caggcggtat gttgctacaa attatgccgg acggcacagg ctcaagagat
    12661 gattttgagc atttagccac gctcactgaa accgtaaaag atgaagagtt atttggttta
    12721 gaggcagaag aattgctcta tcgcctctac cacgaagagc aagtagaagt ttacccacca
    12781 caagatactg aatttaaatg tggctgctca agagagcgtt caggctccgc attattactg
    12841 gtgccggcag aagaaatcga agaaatgttg gaggaaaaac aaggcgtgat cgatatgcaa
    12901 tgtgaatgct gcgggacaca atatttcttt gacaaagcgg cgattgaagg ctttaaggaa
    12961 gaaactgaaa aattaagtaa gttagggtta aattaagcta aacaagcggt caagtttctt
    13021 gtcttttttg caatttgtaa aaaaacggtg aaatttgacc gcttgcattt tacttatttg
    13081 agccttctgg gtgtaaccca atccctttgt ggcgttcttt tagtttagca ttgatctctg
    13141 cccacgagag atcggcattg tgcaataaca ccgttaagtg atacatcaga tcagccactt
    13201 caccgaccaa ctcttcccga tcatttttca ttgccgcaat cacgctttct actgcctctt
    13261 cccctacttt ttggacgatt tttggcgtgc ctttggcgta aagtttagcg gtataagaac
    13321 tttccggatc agcattttta cgttcggcta tcattcgttc taatttgctg aaaaagatcc
    13381 aatctggttg ttcttgttca aactgatgaa aacagctctc cgcccccgta tggcaggttt
    13441 cgccgatagg gttagcgagg attaacaggg tgtcgttatc acaatccaaa ctcatatcca
    13501 ccacgtttag gaaattgccc gaggtttcgc ctttcgtcca cagccgttgt ttagtacggg
    13561 agtaaaaagt cactcgcttt tcagccagcg ttttttcgag ggcttgttgg ttcatatatc
    13621 ctaacatcag tacttcgcag gtttgggcgt tttggacgat aacgggcagt aagccgtcca
    13681 ctttttgcca gtctatttta ttttgcattt tttcttcctt tttttgaccg cttgtttaga
    13741 catataggct tatttcaatc aaattaccat cagggtcacg gcaataaacc gactcaattt
    13801 ttcccactgc ccccgtacga ggcacaatcc caccttccaa aatctccacc tgatgtcgct
    13861 gtaacacata gataacctcc tgaagtggag ttaccgttaa gaggcataaa tctgccgtgc
    13921 cacaatcggc attttgggca ttgggtagga tttctgcacc tttttggtgg aggttgattt
    13981 tctgtgtgcc aaacaaaagc gctttgcgat tatcgccaaa ggtgatttct tgcataccca
    14041 aaatggtcgt ataaaaatca atggtttttt gcatatcggc aacggttaaa accagatgat
    14101 ctaaggcagt aatcttaatc atctacgcac ctcaacccct tccttcgcca aatattcctt
    14161 caactcccca atattgataa tttgtttatg aaacacactc gctgccaacg caccatccac
    14221 atttgcctca ataaaagcat cacggaaatg caccatttcg cctgcaccgc ctgaggcgat
    14281 gagtgggact tggcaaactt cacgcacttt tttcagttgc accaaatcgt agccgttgcg
    14341 tacgccgtct tggttcatca tattcagcac gatttcgcct gctcctcgct tttgcacttc
    14401 ctccacccaa tccaacaatt gccattcggt ttggcgggtg cgtttttcat cgccggtata
    14461 ttgattgacc caatatttgc cggtttctgc ctcgaaccag ctatcaatac caaccaccac
    14521 cgcctgcacg ccaaagcgct ttgccagttc ggtaatcagc tcggggttgg caagggctgg
    14581 ggaattgatg gagattttgt ccgctccgaa agcgaaaatc tgctccgcat cggcaatggt
    14641 tttgattccg cctgccacac agaacggaat atcaatcacc tgtgccacac gttccaccca
    14701 gcttttatcc accgttctgc tgtcacttga ggcggtaata tcgtaaaaca ccaactcatc
    14761 cgccccctct tgggcataac gctgggcgag tggcacaatg tcgccgatga tttcgtggtt
    14821 gcggaactgc acgcctttca caacttgccc gtcacgcacg tctaaacaag gaattatccg
    14881 ttttgccaac attcgattgc ctccgctaca ttaaatttac cttccaacaa cgcacgaccg
    14941 acaatcacgc cagccacgcc cgtaccacaa agcgctttga tgtcggcaag cgagccgata
    15001 ccgcctgagg actgaaattg aatctctggg tatttggcac agatttctcg atagagatct
    15061 acatttgaac ctgccagcgt gccgtctcgg gaaatgtcgg tgcataaaac gtgttgcaag
    15121 cccacggttt gataatcttc aatcaactcc tcgagcgaca caccacttgc ctcttgccag
    15181 ccgctcatcg caatgatttt ttgaccgatt gcatcaatgt tcacatccag tgccagcaca
    15241 aatttctccg caccgtactt tttgaaccag cctttaacca tttcacgctc ttttaccgca
    15301 gtcgaaccaa tcaccacacg gtttgctcca acagcaagta aatccgccac atcctgctcg
    15361 gtgcggatac cgccgcccac ttgaattttg cagtgggttt cacgaataat tttgccgata
    15421 agtgcggtct gtctttgagc cggatttttc gcccctgtaa gatcgaccaa atgtaactgc
    15481 tccgcccctt gtgccaagta gtcggcaaat tgggcaatcg ggtcatcggc ataagtcgtc
    15541 tgtttcgcat aatcgccctg atgtaggcga actacttgcc catcgataag gtcgagggcg
    15601 gggataatga tggatttttg catattattg ttcctgtgtg cctagcacga gccgtgctag
    15661 gctgaataat cccagtcgcg ctgcgactgc ctctctaagc tacggagtag cttggtttat
    15721 ctagccccat acggctcgta tggggtacaa gcggtcaaat tcttccaaaa acttgcaaaa
    15781 aaccgaccgc acttatttct tcacctgttt cgccacttgt tcaatcaccg cagcgaaatc
    15841 aatcgcattt tgttgcgtaa tcaccggttt gccggtctct gcctccaaac tttcccgagc
    15901 cacttttgca acatttccgc cccgtttggc aacggtttta ttttcttcca agccctgtgg
    15961 gtggctgatt tgagcgatgt ctttggtggc agcctcagca agcatattca gcaccaactc
    16021 ggtggtcgtc atattgtctc gcagactttc ctttttcagc cctttgaaat ccttatattg
    16081 gcgagtagtc ataccgctcc acgcctgtgt gatttcattg gtgagaatcg caaattctct
    16141 gcccacttgc acaccgtgat cttgccaagt atccgtcagt tcttttcgca cctgaatggc
    16201 ttgcaagcgt tggttaatcc actcacggga atatcccttt ttcaagtaag tagccaaagc
    16261 tcggtcaatg gtcaattcag gatcgataat ctcatcaatc cgctctttgc ctacctctgc
    16321 cagccacatt ttcaacggct cggctttcgg gcttggcaca gactgaataa tacggaaaat
    16381 gccttgtaaa tccgtggcat cggtttcccg catttttccg tctggggctt ttaatttcaa
    16441 ctgtacgatt ttttcgtaca gttcaattcc gccctcttcg tccttgattt tccgctttaa
    16501 atcactccaa taacggcgtg gattgctact ttgcgtcagc acctcgataa tgtccaccac
    16561 cgagaaaaac cactcttctt tttcgctatc ccacaccgag cggatttggc tgttttcaaa
    16621 tagtttaatt tcgttcattt ctcaccttct ttcactggtt aaattaacag taattttgtc
    16681 gaaataaagc gagaaatcaa gccctatttt caaacttttc gatcgagatc acaaaatcag
    16741 acattctcca caaaattcct gagcaacttc gccccagcct cgcccgaacg ctcggggtgg
    16801 aactgtacgc cgtagaagtt ttggctggca atggcagcgg aaaacggcac gccgtagtcg
    16861 caggtggcga tggtgttctc attcggtagc acaccgtagc tatgcacaaa atagaaatga
    16921 ttgccttgct caatgtcgtg aaatagcgga tggtcggctt ggtattgcac cttgttccag
    16981 cccatatgcg gcaacggcaa accgcattca ggcaagcgtt cggttttgcc actcattaag
    17041 ttcagtgttg ccacatcgcc ttcgtgggaa aagtccgtca ttaactgcat tcctaagcag
    17101 atgccaagca tcggctgggt ggcgttgcga atggtgtcga taagtcggcg atcgtgcaag
    17161 atcgccatcg ccgccgctgc tgttcccaca ccggggagta gcaatttatc ggcagattgg
    17221 attttgttga gatctcgcga gatctcagcc cgaatgccaa gacggtcaaa agcaaatttg
    17281 accgaagaca ggttggcaca gcctgtgtcg atgatggtga ggttggtcat ttagtttcct
    17341 gagttaagta tttcttatag tgaagtaaaa ttgactcaat atatctgttt ccttcaaaag
    17401 ctttcttatc gaatcttttg ataattgcca aaaataaact attaaagaaa aaatcagatt
    17461 taaaattatt atttagtaaa tctatatcta gttgctcacc ttttagtttt acacttaaaa
    17521 tagatttata acattccaat aactctggag ttcttgtttc atgcaatata attacaggtc
    17581 cattcctaga aggattcaac ttggaaatta agtcatctaa attta
//
LOCUS       DANMBQ010000039        17465 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.039, whole genome shotgun sequence.
ACCESSION   DANMBQ010000039 DANMBQ010000000
VERSION     DANMBQ010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17465
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.039"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..937)
                     /locus_tag="PXE92_001144"
     CDS             complement(<1..937)
                     /locus_tag="PXE92_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL5760404.1"
                     /translation="MPTKPHKEYHELVELLISRGMLINDKSYAEKKLSQVGYYRLSGF
                     WHISRKPNQDGGLSENFLENVQFEEVYKLYIFDKKLRLLLLDIIERLEVNIRNIMAHE
                     LGRENPLAYEDYSLINQKFLKFQWKSNYAYANWLETTANKIKRSKDDSIEWHRKNEKE
                     IPFWVITETWDFGALSKFYSLLNGQHQRKIAKKFNVDENTLKNWLNEINIVRNLSAHH
                     SRIWNRKFSDIAIPKLDDPRWSKFKKMQQYFSNLSLDDKAKERIFGRVAILWFLVSQT
                     STNYHWLDKFEDLLNDFPNLPNTKVELMGFNREILE"
     gene            complement(1149..3266)
                     /gene="spoT"
                     /locus_tag="PXE92_001145"
     CDS             complement(1149..3266)
                     /gene="spoT"
                     /locus_tag="PXE92_001145"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HDL5760405.1"
                     /translation="MYLFEPLDRIIQGYLPPEQIERVKRAYVIARDAHEGQTRSSGEP
                     YITHPVAVASIIAEMKLDQEAVIAALLHDVIEDTPYTEEELAAEFGQSVADIVQGVSK
                     LDKLKFRTRQEAEVANFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAK
                     ETLEIYSPLAHRLGIEHIKNELEDLGFEAMHPQRYRVLKMAIASARGHRKELIQRIAD
                     DIRGRLEEVQIEARVYGREKHLYSIYQKMRQKDQHFHSILDIYAFRVVVDNVDNCYRV
                     LGQMHALYKPRPKRVKDYIAVPKPNGYQSLHTSMIGPHGVPVEVQIRTEDMDKMADMG
                     VTAHWRYKEGESHHNTTVQLKAQQWLQSIVELQNSAGNTAEFIDSVKSDLFSDDIFVF
                     TPKGRIVELPANATAIDFAYAVHSGIGDRCVGAMVDRNPYPLSEPLRTGQTVEIITEQ
                     GKRPNASWLNFVVSGKARAKIRQSLKNQQHDEAIALGRRQLVRAMNLRSLDELCSETI
                     QSVLDELRLSSFDELLAEIGLGNQMSNVIAQRLLGEPLLIDTDGNPENNQPLKIEGIE
                     NRLISFANCCLPIPGDEIIAHVSSGKGLAIHNACCGNVKDYATEPSNYLPVEWEIAKE
                     KAIQFETEIVLDIINEPGVLAGITSTLAKLNSNIGSINSEAREGNIYQVRVQISVENK
                     EHSELILRKLLSVKGVVKAARKQ"
     gene            complement(3376..3657)
                     /gene="rpoZ"
                     /locus_tag="PXE92_001146"
     CDS             complement(3376..3657)
                     /gene="rpoZ"
                     /locus_tag="PXE92_001146"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDL5760406.1"
                     /translation="MARVTVQEAAEKIGNRFDLILIAARRARQLQLHTREPLVPEEND
                     KPTVIALREIEEGLITTDIMDQLENHDSIKQEAAEQEAISFLTEMSNEA"
     gene            complement(3760..4257)
                     /locus_tag="PXE92_001147"
     CDS             complement(3760..4257)
                     /locus_tag="PXE92_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDL5760407.1"
                     /translation="MAHFYEYLEFNSDEDRENQLEVYVEVKLSTDTEEKLQAVGVQGD
                     WLVMAEPYCPDCVEIVAYFQRMAKLNPNIKVKYVARKDNQERKHFDSDEQQQAVISAQ
                     KIPTIFDIRNGKTELVLSEFPQFLKDKMAANPEQFEQLKADFRMGKFGKEVEAELLAI
                     LLNTK"
     gene            complement(4282..5304)
                     /locus_tag="PXE92_001148"
     CDS             complement(4282..5304)
                     /locus_tag="PXE92_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5760408.1"
                     /translation="MSVTKKRLTLSDIAELSGVSKTTVSMILNGRGNDFRIKSETCQK
                     VKEIAKKHGYRANVYAKSLQAQRTNVIGLVIPDLTNYGFALTSRTLEKLCRENGLQLV
                     IACSDDTFEGEKKAIERLLDRQVDLLITAPTHNEPTYYQNAAQYTPMLQLDRYISGLN
                     IPSITSNDTQSISMLVENIVRAYHLKEFFYLGGQLSLSPSQNRLKGFREGLEQSHLAL
                     DENWVLHQDYQPESGYQMFAQIVEKLGRLPEAVFTASFTLLEGVMRYLTEHQQMDKLL
                     TQELHLATFDDHHLLNALPFHIHSIKQDHQQIAERTFELIQQKLAQQKIDDVKVDCEI
                     LWRKSI"
     gene            complement(5344..6774)
                     /locus_tag="PXE92_001149"
     CDS             complement(5344..6774)
                     /locus_tag="PXE92_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="HDL5760409.1"
                     /translation="MHIFNNGKYKSLHAQSEGELNALRQTVLSDPDFYPTYHLAPETG
                     LFNDPNGLIFDGEKYHIFAQWFPYGALHGMKHWQHFITTDFQTFSKGDLLIPDELFES
                     HGCYSGGAILWQDKIVAFYTGNTRRPSDNARIPHQNIAIFDKSGKLLEKRCIIDQAPA
                     GYTEHVRDPKPYLTAEGKIRFVLGAQRENLTGTALIYEMDDLNATPRLIAELEVHNFD
                     NSNVFMWECPDLFSLGGKDLFVWSPQGKLRESHQFQNNYHATYALGELNGNRLRAEHI
                     EELDYGFDFYAPQTVENSDRILFGWVGLPDLTYPTDKYQWHSMLTLPRKLSLQNGKVI
                     QNPIVNVGELQAVEMSENFAIENLDTAYLQISVENQPLVLDFFSNEQGQKLSLRFENG
                     VLSLDRSQTEQTELMEKFGSVRHCKIEQLETIEIFFDRSVVEIFVNGGEKVLTSRFFI
                     AKRENVVKSSRPIQVKVAKVLPISVE"
     gene            complement(6879..7802)
                     /locus_tag="PXE92_001150"
     CDS             complement(6879..7802)
                     /locus_tag="PXE92_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoimidazole riboside kinase"
                     /protein_id="HDL5760410.1"
                     /translation="MSKIWVTGDAVVDLIPDGEHHYLKCAGGAPANVAVGVSRLGVEA
                     GFIGRVGNDPLGKFMREVLQAENVCTKQMILDAQHRTSTVIVGLDNGERSFTFMVNPS
                     ADQFLEIGDLPEFNQGDFLHCCSIALINDPSRSTTIEGIRRVKKAGGYVSFDPNLRES
                     LWKSLDEMKTVVNSVVAMADILKFSEEELTLLTETETLEQATQAITAQYPEKLIIITL
                     GKDGAIYHFNGKSQVVAGKALKPVDTTGAGDAFVSGLLAGLAQTPNWHDETVLVEVIR
                     KANASGALATTAKGAMSAFPNKAELDAFLAE"
     gene            complement(7919..9346)
                     /gene="miaB"
                     /locus_tag="PXE92_001151"
     CDS             complement(7919..9346)
                     /gene="miaB"
                     /locus_tag="PXE92_001151"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDL5760411.1"
                     /translation="MAKLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLL
                     LNTCSIREKAQEKVFSQLGRWKNWKKDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVF
                     GPQTLHRLPEMINQIRGGKSSIVDISFPEIEKFDRLPEPKAEGPTAFVSIMEGCNKYC
                     SFCVVPYTRGEEVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFA
                     ELLRLVAAIDGIDRLRYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMM
                     KRNHTALEYKAIIRKLRAVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFS
                     FIYSARPGTPAADLPDNVSDDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPS
                     KKDLMELTGRTETNRVVNFVGTPDMIGKFVDVKITDVYTNSLRGEVIRTEDQMGLRVV
                     ESAESVIARTRKEDDLGVGKYVVNL"
     gene            complement(9563..10063)
                     /gene="crr"
                     /locus_tag="PXE92_001152"
     CDS             complement(9563..10063)
                     /gene="crr"
                     /locus_tag="PXE92_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005702996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HDL5760412.1"
                     /translation="MGLFDKLFGSKQKESQEIKIYAPLTGEIVNIEDVPDVVFSEKIV
                     GDGVAIRPSGDTIVAPVNGTIGKIFETNHAFSIESEEGVELFVHFGIDTVELKGEGFT
                     RLAQEGQTVKVGEPIIKFDLALLEGKAKSVLTPIVISNMDEISNLSKLNGQVVAGESV
                     VLTLTK"
     gene            complement(10148..11869)
                     /gene="ptsI"
                     /locus_tag="PXE92_001153"
     CDS             complement(10148..11869)
                     /gene="ptsI"
                     /locus_tag="PXE92_001153"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HDL5760413.1"
                     /translation="MITGIAASPGAVFGKALVLKEEPIVLNTRKITESEVEAEKAKFF
                     TGREKAAAQLTAIKEKARRTLGEEKEAIFEGHLMILEDEELEEEILSYLTDNLVTADV
                     AASKVIEMQASMLAEIDDEYLKERAGDIRDIGNRLVRNILNMNIVDLGDIQDEVILVA
                     YDLTPSETAQLNLDKVLGFITDVGGRTSHTSIMARSLELPAIVGTNNVTSLVKTGDFL
                     ILDAVNNEVHLNPSEEKIANFKALQEKLNAEKEELAKLKELPAQTLDGHKVDVAGNIG
                     TIRDVEGVLRNGGEAVGLYRTEFLFMDRTQLPGEEEQFQAYKEIVEAMNGQMVILRTM
                     DIGGDKELPYLDLPKEMNPFLGWRAVRIGFTRREILDTQLRAVLRASAFGNLAVMFPM
                     IISVEEIRLLKSIVAELKDQLRAEGHAFDENLKLGIMVETPSAAVNARHLAKEADFFS
                     IGTNDLTQYTLAVDRGNEIIAHLYNPLSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     VRATALLLGMGLDEFSMSGISVPHVKKLIRSINFADAKALADEALAQPTAADIERLVD
                     EFYQKLN"
     gene            complement(11991..12248)
                     /gene="ptsH"
                     /locus_tag="PXE92_001154"
     CDS             complement(11991..12248)
                     /gene="ptsH"
                     /locus_tag="PXE92_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HDL5760414.1"
                     /translation="MYSKDVVITAPNGLHTRPAAEFVKAAKGFASDITVTSGGKSASA
                     KSLFKLQTLGLTQGTTITISADGEDEQKAVDFLVDLIPTLE"
     gene            12509..14083
                     /gene="thiP"
                     /locus_tag="PXE92_001155"
     CDS             12509..14083
                     /gene="thiP"
                     /locus_tag="PXE92_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease"
                     /protein_id="HDL5760415.1"
                     /translation="MLSTLTKTTAWFIYFSIIALYVFSLWALMDYHQNDTLFVFSDIT
                     ATVAYSLLQASLSAVISLFLGSLLARSFFYLDFKGKNLLYKTISFIWALPSLVIIFAV
                     IGVFGNSGWLAKLFQQLGWNWQFNLYGLHGIILAHCLFNIPFVMKYYTGGLQLTPSSR
                     FQLAAQLNLTGWNYIQIVELPIIKTLLPYMFMTVFLVCFTSFPIVLMLGGSPKYSTLE
                     VAIYQAVTFEFDFAKALILIRVQFVVGIGLQLVMNYISTSALKKLKQQPNRVEIWKPK
                     PTGLAKLGLQAVIFLQSFAIILPLVSVIWAGLSVSKLSERLLNPTLWQATQYSLYLSL
                     IASIFVITISYLIALEARQLLYTKAKLRYSILTAITLFPLLLPIFLLSVGLFILLMNS
                     ELSSEALLLLVGICNGLTLLPFIYPMLFSAMWNSLTSHDKLAQGLGLKGLRRWWIVEK
                     NQLIRPLVTVFALAMSSSLGSFTVIAFFGNADFSSLPYLLYQQLGSYRTEDAAVTALI
                     LMLFALLPFLFSKDKL"
     gene            14080..14730
                     /gene="thiQ"
                     /locus_tag="PXE92_001156"
     CDS             14080..14730
                     /gene="thiQ"
                     /locus_tag="PXE92_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein"
                     /protein_id="HDL5760416.1"
                     /translation="MIELDLHFTYEQMNMHFQLSVKKGERIAVVGESGAGKSTLLNLI
                     AGFEKAESQQSQLWLNQKNHLDTEVAQRPVSMLFQDNNIFPHLTVEQNIGLALVPSLS
                     LNPKQKAQVKQIATQMGIETFLQRQADQLSGGQKQRVALARTLLRDKPILLLDEPFSA
                     LDPQRRAELQQIVFDICQSRNLTLLMVTHQLSESLFLFNRVITVADGEIVSDLSPL"
     gene            15037..16451
                     /locus_tag="PXE92_001157"
                     /pseudo
     CDS             15037..16451
                     /locus_tag="PXE92_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605131.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sucrose transporter subunit IIBC"
     gene            complement(16567..17370)
                     /gene="map"
                     /locus_tag="PXE92_001158"
     CDS             complement(16567..17370)
                     /gene="map"
                     /locus_tag="PXE92_001158"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDL5760417.1"
                     /translation="MNNIPLRNEEEIQKLRVACKLASDVLVMIAPYVKEGVTTGELDK
                     ICHEYILANGATSASLGYHGFPKSVCISLNEVVCHGIPSDDKKLKKGDILNIDVTVIK
                     DGYYGDNSMMYVVGEPSVRDKRLMAVTLESLYVGIRTVKAGVRLKEIGTAIQKYVEKE
                     GFSVVREYCGHGIGTEFHCDPQVVHYATDDGGVVLKEGMVFTIEPMVNAGKKEVRLMG
                     DGWTVKTKDRSHSAQYEHQIVVTKDGCEVLTIRDEEIAEGRISRIMHNS"
BASE COUNT         4929 a         3875 c         3230 g         5431 t
ORIGIN      
        1 tctctaatat ttctctgtta aatcccatca gttctacttt tgtattcggt aaattaggga
       61 agtcatttaa taaatcttca aacttatcta accaatggta attagtgctg gtttgactaa
      121 ctaaaaacca cagaatagct acccttccga aaattctctc ctttgctttg tcatccagcg
      181 ataagtttga aaaatactgc tgcatttttt taaatttcga ccaacgagga tcatctagct
      241 taggaatagc aatatcgcta aattttctgt tccaaatacg agaatggtga gcagaaaggt
      301 ttcttacaat gtttatttca ttcaaccaat tctttaacgt attctcatct acattaaatt
      361 tcttagcaat tttcctttgg tgttgcccat ttaacaatga gtaaaactta gataatgcac
      421 caaaatccca ggtttcagta attacccaaa aagggatttc cttctcattt tttctatgcc
      481 attcaataga atcatcttta ctacgcttaa ttttattagc tgtagtttct agccaatttg
      541 cataagcata attagatttc cattgaaatt ttaagaactt ttgattaatc agagaataat
      601 cttcataagc caaaggattt tcacgcccca attcatgagc cataatatta cgaatattaa
      661 cttctaaacg ttcaataata tccaataata aaagccttag ttttttatca aaaatatata
      721 gcttataaac ttcttcaaat tgtacatttt cgagaaaatt ttcgctaagc ccaccatctt
      781 gattaggctt tctagatata tgccaaaatc cagataaacg ataataccct acctgagata
      841 attttttctc tgcatagctt ttatcattta tgagcattcc tctagatatg agtagttcta
      901 ctaattcgtg atactcttta tgtggttttg taggcataaa attgaaggca ttttaagaaa
      961 ggcaaggacg tagcttgaca ctctaagtcg attacattta gtaaacctca gggacagggg
     1021 ctacgccacg attgcaaggg attatacatt ttagctgatt aaagtcaaaa ggtttcatca
     1081 attaataata gcaatactgt acttttaagg actataattg caaaaaactg ataaaatttt
     1141 accgcttgtt actgcttacg ggccgctttt acaacacctt ttacacttaa tagcttacgg
     1201 agaatcagct cagaatgctc tttattttcc acagaaattt gtactctcac ttgatagata
     1261 tttccttctc ttgcctcgct attaatgctg ccaatgttgc tatttaattt ggcaagcgtt
     1321 gatgtgatcc ccgcgagtac ccctggttca ttgataatat ccagtacgat ttccgtttca
     1381 aattgaatcg ctttttcttt ggcaatttcc cattccacag gtaaataatt actcggctct
     1441 gttgcgtaat ctttcacatt accacaacaa gcattgtgga ttgccaatcc tttacctgaa
     1501 ctgacgtgag caataatttc atcacccggt ataggtaagc aacagtttgc aaaactgata
     1561 aggcggttct caatcccttc aattttaagc ggttgattat tttctggatt accatcagta
     1621 tcaattaata gtggctcccc taataagcgt tgagcgataa cattactcat ttggttacct
     1681 agaccaattt cagccagtag ctcatcaaag cttgataaac gtagctcgtc taatacggat
     1741 tgaatagttt ctgaacacaa ttcatcaagt gagcgtaaat tcattgcccg aactagctgt
     1801 ctacgcccaa gtgcaatcgc ctcatcgtgc tgctgatttt taagcgattg acgaatttta
     1861 gccctcgcct taccacttac tacaaaattt aaccacgatg catttgggcg cttaccttgc
     1921 tcggtaataa tttccaccgt ctgtcctgtt cgtagcggtt ctgaaagtgg atacggattg
     1981 cgatcaacca tcgcacctac acaacgatcc ccaatgcctg aatgcaccgc ataggcaaag
     2041 tcaatagcgg tagcattcgc cggcaattca acaatacgcc ctttcggggt aaagacgaaa
     2101 atatcgtcag agaacagatc cgatttaacg ctatcaataa attctgctgt attgccggca
     2161 ctgttttgca attcaacaat actttgtagc cattgctggg ctttgagttg aacggtcgtg
     2221 ttatggtgcg actcgccctc tttgtaacgc cagtgagctg ttacccccat atccgccatt
     2281 ttgtccatat cttcggtgcg aatctgtacc tccaccggta caccgtgcgg gccaatcatc
     2341 gaagtgtgta aagattgata gccgttcggt tttggcacgg caatataatc tttcacccgt
     2401 ttcggacgag gcttatacag tgcgtgcatc tgccctaata cacggtaaca attatctaca
     2461 ttatcaacca ctactcggaa agcataaata tctaaaatcg aatgaaaatg ttgatctttc
     2521 tggcgcattt tttggtaaat ggaatagaga tgtttttcac gcccatacac acgggcttca
     2581 atttgcacct cttctaaccg accacgaata tcatcggcaa tgcgttgaat tagctcttta
     2641 cgatgtcctc tggcactggc aatagccatt ttcagtaccc gataacgttg cgggtgcatt
     2701 gcctcgaagc ctaaatcttc caactcgttt ttaatatgct ctattcccaa gcgatgtgcc
     2761 aacgggctat aaatctctaa ggtttctttc gctatacggc ggcgtttatc cggacgcaaa
     2821 gcaccaagcg tacgcatatt atgggttcgg tcggcaagtt taattaacac aacccgaatg
     2881 tctttggtca ttgccaaaat cattttacgg aagtttgcca cttctgcctc ttggcgggtg
     2941 cggaatttta atttatccag cttagaaacg ccttgtacaa tatctgctac gctctgtcca
     3001 aattccgccg ccagttcttc ttcggtgtaa ggtgtatctt caatcacatc gtgcaacaaa
     3061 gccgcaatca ccgcttcttg atcgagcttc atttccgcaa taatcgacgc cactgctacc
     3121 gggtgagtaa tatagggctc accgctagag cgtgtttgtc cctcgtgagc atcacgggct
     3181 atcacataag cacgttttac acgctcaatc tgctcgggtg gcaaatagcc ttgaataatt
     3241 cgatctaaag gttcaaaaag atacacgtta tacctcaaca acagaaataa aaatggacaa
     3301 cgaatttgca aattttgagg aaaatcctac cgcttgcaga ctcaattgtc cattctctat
     3361 ttacgaaaaa taaaattacg cttcgttgct catttcagtt aaaaatgaaa tcgcctcttg
     3421 ctccgccgct tcttgcttaa tagagtcgtg attttccagc tgatccataa tgtcagttgt
     3481 aattaaacct tcttcaattt cacgtaatgc aatcacggtc ggcttatcgt tttcttcagg
     3541 cacaagtggc tcacgggtgt gaagttgtaa ttgtcttgca cgacgtgcag caattaagat
     3601 taaatcaaaa cggttgccaa ttttctccgc tgcttcttgt acggttacac gagccataaa
     3661 tttactccaa agatttattc ggttttattc ataaaaagat tgcgaattat acagaaattc
     3721 cgccaattcc gcaatgaaag cgggctaaat tcacaaaatt tatttggtat tcagtaaaat
     3781 cgccaataat tcagcctcaa cctctttgcc gaattttccc attctaaaat cggcttttag
     3841 ttgctcgaat tgctcagggt tcgctgccat tttatctttt aaaaattgcg gaaattcaga
     3901 taacactaat tctgttttgc cattacgaat atcaaaaata gttggaattt tttgcgcaga
     3961 aatgaccgct tgttgctgtt catcgctgtc aaaatgtttg cgttcctgat tatctttgcg
     4021 agccacatat ttcaccttaa tgttaggatt gagctttgcc attcgctgga aataagccac
     4081 aatttccaca caatcggggc aatatggctc tgccattacc agccagtccc cttgcacgcc
     4141 aacagcttgc agtttttctt ccgtatctgt ggaaagcttg acctccacat acacttctaa
     4201 ttgattttca cgatcttcat cgctgttaaa ttctaaatat tcgtaaaaat gtgccataat
     4261 tttgtctttt cctatctcat cttaaatgga tttacgccat aaaatttcac aatcaacttt
     4321 aacgtcatct attttctgtt gcgctaactt ttgctgaatt aattcaaagg tacgttcggc
     4381 aatttgttgg tggtcttgct taattgaatg aatatgaaaa ggtagtgcat tcagtaaatg
     4441 gtgatcatca aaggttgcta aatgcagttc ttgagtcaat aatttatcca tttgttggtg
     4501 ttcagtcaga tagcgcatta ctccctcaag tagggtaaaa gaggctgtga ataccgcttc
     4561 tgggagcctg ccaagttttt caactatctg agcgaacatt tgatagcccg attccggctg
     4621 atagtcttga tgcagaaccc aattttcatc aagtgccaaa tgtgactgct ccaaaccttc
     4681 acggaagcct tttaaacgat tttgacttgg cgagagtgaa agttgtccac ctaagtaaaa
     4741 aaactctttt aagtgataag cccgtacaat attttccacc aacatactga tactttgtgt
     4801 atcattactg gtgatagaag ggatattcaa cccagaaata tagcggtcta gctgtaacat
     4861 tggggtatat tgtgccgcat tttgataata agtcggctca ttatgtgtcg gagcagtaat
     4921 cagtaaatct acctgtctgt ctaataaacg ctctatcgct ttcttctcac cttcaaaggt
     4981 atcatccgag caagcgatca ctagctgtaa cccgttttca cggcataatt tctctaaggt
     5041 tcttgaggtc agagcaaagc cataattcgt taaatcggga atgactaaac cgatcacatt
     5101 cgtgcgttga gcctgtaatg attttgcata tacattagca cgataaccgt gttttttagc
     5161 gatctctttc actttttggc aggtttcgga tttgattcta aaatcattgc cccgcccatt
     5221 taaaatcata ctgactgttg ttttagatac gccgctgagt tccgcaatat cactgagcgt
     5281 taggcgtttt ttagtcacac ttatctcctt ttagcataaa aatgggcatt actgcccatt
     5341 gctttattct acgctaattg gcaatacttt tgctactttc acttgaatcg gacgagagct
     5401 ttttacgaca ttttcacgct tagcgataaa aaagcgtgaa gtcagcactt tttccccgcc
     5461 gtttacgaaa atttccacca cagaacggtc aaagaaaatc tcgattgtct ctaattgttc
     5521 aattttgcaa tgacgaaccg agccaaattt ttccatcaat tctgtttgtt cggtttggct
     5581 acgatctaag ctcaacaccc cattttcaaa acgtaagctg agcttttgcc cctgttcatt
     5641 gctgaaaaaa tccaacacaa gcggttgatt ttccacagaa atttgcaagt aggcagtatc
     5701 caaattctcg attgcaaaat tttctgacat ttcgaccgct tgtaattcgc ctacattcac
     5761 gattgggttt tgtatcactt tgccgttttg cagggaaagt ttacgaggca atgtcagcat
     5821 tgaatgccac tgatatttat cagttgggta agtgagatca ggcaagccga cccagccaaa
     5881 caaaatgcga tcggaatttt ccaccgtttg cggtgcgtaa aagtcaaagc cgtagtccag
     5941 ctcttcaata tgctctgccc gtaatctgtt gccgtttagc tcgccaagtg cgtaagtggc
     6001 gtggtagtta ttttggaatt gatggctttc acgcagtttg ccttgtggcg accacacaaa
     6061 cagatcttta ccaccaagtg agaacagatc cggacactcc cacataaaca cattgctgtt
     6121 atcaaaattg tggacttcca gttctgcgat taaacggggt gtggcattta aatcgtccat
     6181 ttcataaatt aacgccgtgc cggtcaagtt ttcacgctga gcccccaaca caaaacgaat
     6241 tttgccctct gcggtaaggt aaggtttcgg gtcacgcacg tgttcggtgt agcctgccgg
     6301 tgcttggtcg ataatgcaac gcttttccaa taatttgccc gatttatcaa aaatcgcgat
     6361 attttggtga ggaatgcggg cattatctga tgggcggcgt gtattgccgg tgtaaaaagc
     6421 gacaatctta tcttgccata aaatcgcccc acctgaataa cagccgtggg attcaaacag
     6481 ctcatcggga atcagcaaat cccctttact gaacgtttga aaatcggtag tgatgaaatg
     6541 ctgccaatgt ttcattccat gtaatgcccc ataaggaaac cattgggcga aaatatggta
     6601 tttttcacca tcgaaaatca agccgtttgg gtcattaaat aagcctgttt cgggagcgag
     6661 atgataggtt gggtaaaaat cgggatcaga taaaacggtt tggcgaagag cgtttaattc
     6721 gccctcgctt tgtgcgtgca ggcttttgta tttgccgttg ttgaaaatgt gcatagagtg
     6781 ttcctgtcat ttcagaaatt acgatggtgc aagcgtccac gcttgtaccc ttttgtaaaa
     6841 aatgaggcac aagcgtggac acttgcgcca tcattacatt attccgccaa aaatgcgtct
     6901 aactccgctt tattcgggaa tgccgacatc gccccttttg ctgtggtggc taacgcaccg
     6961 gaagcatttg ctttgcggat cacttcaact aacacagttt catcgtgcca attcggcgtt
     7021 tgagcaagac cggctaataa tccgctgaca aaggcatctc cggcaccggt ggtatccaca
     7081 ggtttcaagg ctttgccggc aacgacttgg ctttttccgt tgaaatggta gattgcaccg
     7141 tctttgccaa gggtgataat aatcaatttc tccggatact gagcggtaat agcttgtgtg
     7201 gcttgttcca aagtttctgt ctcggttaat aaggtcagct cttcttcgga aaatttgaga
     7261 atatccgcca tcgccaccac agaatttacc actgttttca tttcatcaag gctcttccag
     7321 agcgattcac gcaagtttgg atcaaacgaa acatagccac ccgccttttt cactcggcga
     7381 atcccttcaa tggtagtgga acgggatggg tcgttaatca aggcaataga acagcagtgt
     7441 aagaaatcac cttggttaaa ttcaggtaaa tcgccgattt ctaaaaattg gtcggcactc
     7501 ggatttacca taaaagtaaa actacgctca ccgttatcta agccaacaat cacggtggaa
     7561 gtgcggtgct gagcgtctaa aatcatctgt ttggtgcaaa cattttctgc ctgtaacact
     7621 tctcgcataa atttacccag agggtcgtta cccacacgcc cgataaatcc tgcctcaacc
     7681 cctaaacgag aaacgcctac tgcaacattc gccggagcac caccggcaca ttttaaatag
     7741 tgatgttcgc cgtcgggaat taaatccacc accgcatcgc ctgttaccca aatcttactc
     7801 atctcataca cctttaatta gtcacaaaac accaagctaa aacgatttag catttattcg
     7861 attatatact aaaagaccgc ttgtacatac ctacaagcgg tcattttttc tttaattttt
     7921 acagattaac cacgtattta cctacaccta aatcatcttc tttacgagtg cgggcaatca
     7981 cgctttctgc cgattccacc acacgtaatc ccatttggtc ttcggtacga atcacttcgc
     8041 cacggagtga gttggtataa acatcggtga ttttcacatc gacaaatttg ccaatcatat
     8101 ccggtgtgcc aacaaagttt actacacggt tagtttcggt tctgccggtt aattccatca
     8161 agtctttctt agacgggcct tcaaccaaaa tgcgttgttc tgtaccgagc attgcacggc
     8221 taaattgcat tgcttggtgg ttgatgcgtt gttgtaaacg ggataatcgc tcttttttct
     8281 catcatcgga gacattatca ggcagatctg ccgctggtgt acccggtcga gccgagtaga
     8341 taaagctaaa gctcatatca aagttcactt gctcgatcac tttcattgtt tgctcgaaat
     8401 cctctgcggt ttcgcccggg aagcctacaa taaagtccga actaatttga atctcaggtc
     8461 gaacagcacg caatttacgg ataatcgctt tgtattccaa cgctgtgtgg ttacgcttca
     8521 tcattgttaa tacacggtct gaaccacttt gaatcggtaa atgtaagaaa ctgaccaatt
     8581 caggtgtatc acgataaact tcgataatat catcggtaaa ttcaatcggg tggctggtgg
     8641 tgtaacgtaa gcggtcaata ccgtcaatcg ctgccactaa gcgtaataat tcggcaaagg
     8701 tacaaatgcc gccatcaaaa gtttcaccac ggtaagcatt tacgttttga ccgagtaaat
     8761 taacctcacg cacaccttgt gccgcaagtt gggcgatttc aaataatacg tcatccaccg
     8821 ggcgggaaac ctcttcgcca cgagtgtaag gcacaacgca gaacgaacaa tatttattgc
     8881 agccttccat aattgaaacg aatgctgtag ggccttcggc ttttggctcc ggcaagcggt
     8941 caaatttttc aatttccggg aaagaaatat cgacaatcga gcttttaccg ccacggattt
     9001 ggttgatcat ttcaggcaaa cggtgcaaag tttgtggccc gaaaacaata tctacataag
     9061 gggcacgatc acggatatgc tccccttctt gtgaagccac acaaccgcca acaccgataa
     9121 tcaggttcgg tttatctttt ttccagtttt tccaacgccc gagttgcgag aatacttttt
     9181 cttgtgcttt ttcacggata gaacaagtgt ttagcagcaa cacgtctgca tcttcagggt
     9241 tttcagtcag ttcaaaaccg tgagtagagt ttaggagatc cgccattttt gatgagtcgt
     9301 actcattcat ttggcagccc caagtggtaa tatgtaattt agccataacg tttaaaatta
     9361 ataaataatt caataactta gaaaagaaaa gcgtaaagca atttattatt tttgacttaa
     9421 aataaaccct ttacgcaaaa tttgtggcgt tattttacct tgttgcctat tttttatcta
     9481 taaataatcg ccatttatcc gattttacct aaaacaaaaa agccacgatc ttccatcgtg
     9541 gcttccagct aagtaggagg tattatttgg ttaaggttaa aaccacgctt tcaccggcaa
     9601 caacttggcc atttaattta gataagttgc tgatttcatc catatttgaa atcacgattg
     9661 gtgttaatac tgatttggct ttgccttcaa gtagagctaa atcaaattta atgatcggct
     9721 cgcccacttt tacggtttga ccttcctgtg caaggcgagt aaagccttcg ccttttaatt
     9781 caacagtatc aataccgaag tgaacaaata attccacgcc ttcttcagat tcaatcgaaa
     9841 aagcgtggtt ggtttcaaaa attttgccga tagtcccatt tactggagca acgatagtgt
     9901 ctccactcgg gcgaattgcc acaccgtcac ctacaatttt ttcagagaaa acaacatcag
     9961 gcacatcttc aatatttacg atttcacctg ttaatggcgc atagattttg atttcttgac
    10021 tctctttttg ttttgagccg aataatttat caaataaacc catcttaaaa tctcccttag
    10081 atattagata caaaattctc gtacatttta tacgagaatt ttgtatttgt atgctaaata
    10141 attaaaatta gtttaatttc tgataaaact catctactaa gcgttcaata tctgcagcag
    10201 ttggctgagc aagcgcctca tcagctaatg ctttagcatc ggcaaaatta attgagcgaa
    10261 tgagtttttt aacgtgtggc acagagatac cgctcatact aaattcatct aatcccatac
    10321 cgagcaacaa cgcagttgca cgcacgtcac cggctaattc accacacata cctgtccatt
    10381 tgccttcagc gtgtgaagca tcaataactt gcttgattaa gtttaagact gatgggctta
    10441 atgggttata taaatgagca ataatttcat taccacgatc taccgcaagt gtatattggg
    10501 ttaagtcatt agtaccaata ctaaagaagt cggcttcttt tgcaagatga cgtgcattta
    10561 ccgctgctga tggggtttcc accataatac ctagttttaa gttctcatca aaagcgtgac
    10621 cttctgcacg taattgatct ttcaattccg caacgatgga ttttaataaa cggatttctt
    10681 ccaccgaaat aatcatcggg aacattaccg ctaaattacc gaacgcagaa gcacgtaata
    10741 ccgcacgtaa ctgagtatct aaaatttcac ggcgggtgaa accgatacgc accgcgcgcc
    10801 aacctaagaa tgggttcatt tctttcggta aatcaaggta tggtaactct ttatcacctc
    10861 cgatatccat cgtacgcaga atgaccattt gaccattcat tgcttcaaca atctctttgt
    10921 aggcttgaaa ttgctcttct tctcccggta attgagtacg atccataaac aaaaactcag
    10981 tacggtataa accaaccgct tcaccaccgt tgcgtaatac accttccaca tcacggatag
    11041 taccgatatt ccctgccaca tcaactttat ggccatctaa tgtttgagca ggcaactctt
    11101 ttaatttggc taattcttct ttttccgcat ttaatttctc ttgtaatgct ttgaaattag
    11161 cgattttttc ttccgatgga tttaaatgta cttcattgtt cactgcatct aaaatcagaa
    11221 aatcaccagt tttaactagg gaagtaacat tgttagtacc aacaatggca ggaagctcta
    11281 gggaacgagc cataatagaa gtgtgagaag tacgaccacc gacatcggta ataaagccta
    11341 atactttatc taaatttaat tgagctgttt cggaaggggt taagtcataa gcgactaaaa
    11401 taacttcatc ttgaatatca ccaagatcta cgatattcat atttaaaata ttgcgtacca
    11461 agcggttacc aatatcacga atatcacctg cacgttcttt taaatattca tcgtcaattt
    11521 ccgcaagcat tgaagcctgc atctcaatca ctttacttgc tgcaacatcc gcagtcacaa
    11581 gattatcagt aaggtaactc aaaatttctt cttcaagctc ttcatcttct aagatcatca
    11641 agtggccttc gaaaatcgcc tctttttcct cacctaatgt acggcgagct ttttctttaa
    11701 tcgcggttaa ttgagcagct gctttttcgc ggcctgtaaa gaattttgct ttttctgcct
    11761 caacttcgct ttcagtaatt ttgcgagtat ttagtacaat cggctcttct tttaaaacca
    11821 atgcttttcc aaatactgca ccaggggaag ctgcgatacc tgtaatcata attgtgtcct
    11881 taatttaaga tgatgtaaaa atcatctgga tgttacatag caaaacactt tattgtagct
    11941 tattaagcta caataaagtg acataaatct taaatccgag aatagaaaaa ttattctaaa
    12001 gtaggaatca aatcaactaa gaaatcaact gctttttgct catcttcgcc gtccgcagaa
    12061 attgtaattg ttgtgccttg agtcaaacct aatgtttgta atttgaataa gctttttgca
    12121 cttgcacttt taccacctga agtcacagtg atatcagaag caaaaccttt agctgctttt
    12181 acaaattcag ccgctgggcg agtgtgtaaa ccatttggag cggtaataac aacatctttt
    12241 gagtacataa aatcttcctc ttaaatttga aagttaaaaa aatttgtttt aatccattta
    12301 ttttgcgcac gcaactttac tacaaattca aattaaaaac acgctaaaaa gcgcaaaaac
    12361 tcgtcgtatc accctgctaa atagggtgtt ttttaagcta acttaaaaat catttgtcga
    12421 atatcaagat tctagcacac acttaagcgg aaatgttaca ataatttcgc taccacttct
    12481 ttcacttata ttctaaattt ggagcaatat gcttagcaca ttaaccaaaa caaccgcatg
    12541 gtttatctac tttagtatta ttgctctcta tgtttttagt ctatgggcgt taatggacta
    12601 tcaccaaaat gataccttat ttgttttttc cgatataacg gccacggtcg cttatagcct
    12661 acttcaagcc agcctctctg cggtaatttc actattttta ggcagcctac tggcaagatc
    12721 tttcttttat ttggacttta aaggaaaaaa tttactctat aaaaccattt cgtttatctg
    12781 ggcattaccc tcactagtaa ttatttttgc ggtaattggc gtatttggta actcaggctg
    12841 gctagccaaa cttttccaac aactcggttg gaattggcaa tttaatttat acggcttgca
    12901 cggcatcatt ttggctcact gcctgtttaa cattccgttt gtgatgaaat attataccgg
    12961 agggcttcaa ttgactccaa gcagtcgctt tcagcttgcg gctcaattaa acctaacagg
    13021 ttggaattat atccaaattg tggaactacc gataatcaaa actttgctgc cttatatgtt
    13081 tatgactgtt tttctggtct gctttaccag ttttccaatc gtattaatgt taggcggtag
    13141 cccaaaatac agcacgcttg aagttgccat ttatcaagcg gtcacttttg aatttgattt
    13201 tgcaaaagcc ctcatcttaa ttagggtaca atttgtagtg ggcattggct tacaattagt
    13261 aatgaattat atctcgactt ctgcactcaa aaagctaaaa cagcaaccta accgagtaga
    13321 aatttggaaa ccaaagccta ccggactggc taaactcggc ttacaagcgg ttattttttt
    13381 gcaaagtttt gcaataattc taccgcttgt cagcgtcatt tgggcaggac taagcgtgtc
    13441 aaaactcagt gagcgtttgc tcaaccctac tttatggcaa gctactcagt attctttata
    13501 cttaagttta attgcttcta tattcgtaat cacaatcagc tatttgattg cacttgaagc
    13561 tcgccaatta ctctatacaa aagccaagct cagatatagc attctcaccg caatcaccct
    13621 attcccctta cttctgccga tctttttatt atcggttggt ttgtttattt tattaatgaa
    13681 tagtgaactc tcaagcgagg cattactgct actggtcggg atatgcaacg gcttaacatt
    13741 actgccattt atttacccaa tgcttttctc cgcaatgtgg aatagcctca cctcgcacga
    13801 caaattagca caaggacttg ggctaaaggg gcttcgccgt tggtggattg tggaaaaaaa
    13861 tcaactaatt cgaccgcttg ttaccgtatt tgcgttagca atgtcatcga gcttaggcag
    13921 tttcaccgtc attgcttttt tcggcaacgc tgatttcagc tcactccctt atttactcta
    13981 ccaacaactt ggtagctata gaaccgaaga tgctgccgtt accgcactca ttctgatgtt
    14041 atttgcgtta ctaccattct tattcagcaa ggataaacta tgatcgaact ggatctccat
    14101 ttcacttacg aacaaatgaa tatgcacttt cagctttctg tcaaaaaagg cgaacgtatt
    14161 gcagtggttg gcgaaagtgg cgcaggcaaa agcacattac ttaatctaat tgccggtttt
    14221 gaaaaggcag aaagtcagca aagccagctg tggctaaatc agaaaaatca tcttgatacc
    14281 gaagttgcac aacgtcctgt ttcaatgcta ttccaagata acaatatttt cccgcactta
    14341 acggtagaac aaaacatcgg cttagcttta gtaccaagtt tgtcgctcaa tccgaaacaa
    14401 aaagcacagg ttaaacaaat tgccacacaa atggggattg aaaccttcct tcagcgtcaa
    14461 gccgatcagc tatcgggcgg acaaaaacag cgagtggcat tagctcgtac tttgttgcgg
    14521 gataagccga ttttattatt ggacgaaccc ttctccgccc tcgacccgca acgccgagcc
    14581 gaattacagc aaatcgtgtt tgacatttgc caaagcagaa atctaaccct gttaatggta
    14641 actcaccaac tatccgaaag cctatttcta tttaatcggg tgataacggt agcagatggg
    14701 gagattgttt ctgatctctc ccctctttag caaagcagat ctgctaggtt ctaaatgtag
    14761 ggacgccacg ctggcgtacg caacgatgtc aattccaaca atctaacggt gaatgatgtt
    14821 ccgcacggat actagcgtta ttcatttttt tcagaactcg ccccctactt tagcaaagag
    14881 gggaactgta actaatatta cctccctatt ccgctattct cttccccaaa atgtgatcta
    14941 cttcacaaat ttggaaatat tttaaatctt ctctttttta gctaaaccga tttagttaaa
    15001 atgcaaccga ttatttttta tgaaaggtaa attcaaatga actatccaaa aattgcagaa
    15061 caaacgattg caaaattagg tggcaaagaa aacattacca cacttgccca ctgtgcaacc
    15121 cgtttacgct taaccattgc tgatgaatcc aaaattgata aagaggcgat tgaaaatatt
    15181 gaaggcgtga aaggtcaatt ctctactccc ggtcaatacc aaattatttt tggatcaggc
    15241 acggtaaatg aagtgtatgc ccaaatgcaa aaacaaatgg gtatggcaga tatgtccacc
    15301 tctgaagtag cggctgccgg tgcagcaaat cagccattac tacaacgttt ggtaaaaggc
    15361 ttagccgata ttttcgtgcc gatcattccg gctattgtgg ctggcggttt gttaatgggt
    15421 attcactcaa tgctaacggc agtcggtttc ttctgggaag gtgaatctgt tgttagccgt
    15481 tatccgaata tttccgattt agttgatttc atcaacacta ttgctaacgc accatttgta
    15541 ttcttacctg tattactcgg tttctcagct acacgcaaat ttggcggtaa tccattctta
    15601 ggtgcggcac ttggtatgtt attggttcac ccggcacttg cagacggttg gaactatgcc
    15661 aaaaccttaa tggaaggtaa catcaaatac tggaatattt tcggcttaga aattgaaaaa
    15721 gtgggttatc aaggcacggt tattccaact atcgtttcgg cttgggtgtt agcaaccctt
    15781 gagaaaactt tccgtaaatt tgtgccaagc tatttagata acttggtgac gccaatgatg
    15841 tcattattta tcgccggtat tttagctttc actgtaatcg gaccattggg tcgtgaagca
    15901 ggttcagcga tttcagcagg cttaacgtgg ttatatgaca gcttaggctt tatcggtgga
    15961 gcaattttcg gtacattcta cgctccaatc gtgattaccg gtatgcacca aacctttatt
    16021 gcggttgaaa cccaattatt agctgaagta gcacaaaccg gcggtacatt tatcttcccg
    16081 attgcagcaa tgtctaacat tgcacaaggt gcagcctgtt taggtgtagc ttttgcaatg
    16141 aaagatgcca aagtgcgtgg tttagccgtg ccgtcaggta tttcagccct gttaggtatc
    16201 aaccggcaat gttcggagta aatttacgct accgccaagc ctttattgcg gcgatgatcg
    16261 gttcaggttt agccagtgca tttatcgctt tctttaatgt gaaagcaatt gccttaggtg
    16321 cagccggttt cttaggtatt ccgtcgatta aacctgacag ccttgcaatg tattctgtcg
    16381 gtatggtaat ttcatttgta gttgcattta ccatttcagc catttgggtg aaaaaagcac
    16441 aagcgaaata atcaaaaata gatcacaaaa aagggattaa gtgttagctt aatccctttt
    16501 gtttttaaac gccttagctt aacaatgagt ttcgcaagcg gtcatttttc gctaaaaatt
    16561 tgcaaattag ctgttgtgca taattcgaga aatacgccct tcggcaatct cttcatcacg
    16621 aattgtcagc acttcacagc cgtctttggt aactacaatt tgatgctcat attgtgcgga
    16681 gtggctgcgg tctttggttt tcactgtcca accgtcaccc attaagcgga cttctttttt
    16741 gccggcattc accattggct caatcgtaaa caccattcct tcttttaaca ctacaccgcc
    16801 atcatcggta gcataatgca ctacttgtgg gtcgcaatgg aattcagtac caataccgtg
    16861 tccgcaatat tctcgtacta ccgaaaagcc ttctttttcc acatattttt gaatcgctgt
    16921 accaatttct tttaaacgca cccccgcttt cacggtgcga atcccgacat aaagggactc
    16981 tagcgtaacc gccattaagc gtttatcccg cacacttggc tcaccgacta catacatcat
    17041 cgagttatcg ccatagtagc catctttgat aaccgtcaca tcgatgttta aaatatcgcc
    17101 ttttttcagc tttttgtcat cacttggaat accgtgacaa acgacctcat ttaacgaaat
    17161 gcacaccgat tttgggaagc cgtgatagcc caaactggct gaagttgccc catttgccaa
    17221 aatgtattcg tgacaaattt tatctaattc accagttgtt acgccctctt tcacataagg
    17281 ggcgatcatt actaaaacat ctgaagccag tttacaggct actcgtagtt tttgaatttc
    17341 ttcttcgttt cttaatggaa tattattcat tacattgctc tctgctatat ctgccataaa
    17401 aagtaagggg attatacctt ttttcagcac aatccccaaa cctcagttta gatttctact
    17461 ttaaa
//
LOCUS       DANMBQ010000040        17436 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.040, whole genome shotgun sequence.
ACCESSION   DANMBQ010000040 DANMBQ010000000
VERSION     DANMBQ010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17436
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.040"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(276..1409)
                     /locus_tag="PXE92_001159"
     CDS             complement(276..1409)
                     /locus_tag="PXE92_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis PLP-dependent protein"
                     /protein_id="HDL5760418.1"
                     /translation="MTKFNNIETTLVQIGNRTDPRTGAVAMPIILSTAYGRDGLGEST
                     GWDYTRTKNPTRAVLEQGIADLEGGDAGFAMASGMAAIQLVMSLFKAPDEWIISSDVY
                     GGSYRLFDFSHKNHGTLKPVYVNTADLAAIEAAITPNTKAIFVETPSNPLMEECDVAA
                     IAKIAKKHNLMLIVDNTFLTPALFRPIEHGADIVIHSATKYLSGHNDVLAGLIVAKDS
                     DATKVNGQNLTERLFYFQNCAGAVLSPFDSYLAVRGMKTLALRMERHQSNATELAKFL
                     AEQPEIDSVLYSGKSGMLSFRLQKEEWVAKFLKAIKLITFAESLGGAESFITYPATQT
                     HMDIPEAERITRGITNNLLRFSVGLEHVEDIKADLLQAFKQLK"
     gene            complement(1426..2238)
                     /gene="dapB"
                     /locus_tag="PXE92_001160"
     CDS             complement(1426..2238)
                     /gene="dapB"
                     /locus_tag="PXE92_001160"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDL5760419.1"
                     /translation="MTLKIGIVGAGGRMGRQLIQAVHNAQGVELGSAFERKGSSLVGS
                     DAGEVAGVGTLGVVISDDVAQNVAGFDLLIDFTRPEGTLEHLDICVAHHKQMVIGTTG
                     FDDAGKAAIKAASEKIGIVFASNYSVGVNLVFKLLEKAAKVMGDYCDIEVIEAHHRHK
                     VDAPSGTALSMGEHIAKTLGRDLKTHGVFERNGITGERKRDEIGFATIRAGDVVGEHS
                     VWFADEGERVEIAHKASSRMTFANGAVRAAKWLNGKQNGLFDMTDVLDLNNL"
     gene            complement(2289..2666)
                     /locus_tag="PXE92_001161"
     CDS             complement(2289..2666)
                     /locus_tag="PXE92_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760420.1"
                     /translation="MGIKVLFGTKISAELQYLPEKDLVKILQFKQHVEIYGLENLAGR
                     NKSSDDVPTNDPYWAEKVAKAQKYSLWHYHIGIPEYDTSQGFGNYTSEYILHYVKGEN
                     FIQIVDFTSHPPFKLPSESYLQN"
     gene            complement(2656..3129)
                     /locus_tag="PXE92_001162"
     CDS             complement(2656..3129)
                     /locus_tag="PXE92_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760421.1"
                     /translation="MMKNLPLSMADTLAVIYPAFDFAADDKPATEQQISLLNFRITMA
                     NQLLIACIETIEKNPNFWAEIDLNDFKKYLNQNKVVIFDTQQYFTDGSRTMAILDNMK
                     SNIRKIEQQLSQATAFNFDLERMKERLNDTFHEVPKDITNVNEFRNWLKGVANGH"
     gene            complement(3197..4285)
                     /gene="rlmM"
                     /locus_tag="PXE92_001163"
     CDS             complement(3197..4285)
                     /gene="rlmM"
                     /locus_tag="PXE92_001163"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HDL5760422.1"
                     /translation="MFNKLALYCRAGFEKEVAGEITDKAAQQGIFGFANLKENSGYVI
                     FECYQAGEADRLAQALKFEQLIFVRQMLVVGDLLQNLSENDRISPILAQYAELNPRQS
                     SDVFVETPDTNEAKELLTFCRKFTVPLRSALKKQGWLGKSENMQGSVSLHILFTRPGA
                     CYVGYAYNHNKSPFFMGIPRLKFPAEAPSRSTLKLEEAILTFIPQAEEKKRFNDTMVG
                     VDLGACPGGWTYQLVKRGVFVYAVDHGKMAASLHETGRIEHCPEDGFKFQPPKRKQID
                     WLVCDMVEQPIRISKLIAKWLTNGWCRETIFNLKLPMKKRYQEVQLCLNFLEEELTKH
                     GFWFKMQAKHLYHDREEITVHIAVMGQK"
     gene            complement(4285..4677)
                     /locus_tag="PXE92_001164"
     CDS             complement(4285..4677)
                     /locus_tag="PXE92_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HDL5760423.1"
                     /translation="MKNKFVAIAAFSGLFTVAFGAIASHALSAQLSPKALGWIETGIK
                     YQMFHTLAILALGLFQIANFGQNPPVCRAKAFNIIGSNWALGILLFSGNLYLLALNVP
                     TIHWLTPIGGLCFMLGWIALIYISVRKA"
     gene            complement(4784..6185)
                     /locus_tag="PXE92_001165"
                     /pseudo
     CDS             complement(4784..6185)
                     /locus_tag="PXE92_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252330.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
     gene            complement(6340..8697)
                     /locus_tag="PXE92_001166"
     CDS             complement(6340..8697)
                     /locus_tag="PXE92_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HDL5760424.1"
                     /translation="MNTALEKGKFVFLDKPKNTITTAAHWGALNVTVENGKVVKSEGS
                     LAKNHQNELQDVVADQLYSPVRVKYPMVRKGYLEGNKDTTLRGRDKWVRISWDKAFEL
                     VSGEIQRVREQYGSESIFGGSYGWYSSGSLHASRTLLQRYLNVTGGFTNTKGDYSTGA
                     VQVIMPYVLGNIEVYAQQTSWHTIVESTELLVIWSSNPLNTLRIAWTSAEPEGIDYLA
                     KLKASGKRIICIDPVKSETCQFLEAEWLPINTGTDVALILGIAHTLITENKHDHDFLT
                     KYTVGFEQFADYVLGKADNLPKTAEWASQICDIPEEVIKTLANDFVTHRTMLMSGWGL
                     QRLQHGEQSHWALVTLAAMLGQIGLPGGGFGLNYRYSTNGLNVNSGVRLGAINAGKPN
                     PDMPFFPVSRIADALLKPNQPYDYNGQTLHYPNIKLVYWAGGNPFAHHPDTNYLVKAW
                     QQPETMIVNECYWTPTARMADIVLPATTSYERNDLTVAGDYVAKHIIPMKQVVEPQFE
                     AKNDYDIFAELAKRAGKEQAFTEGKSEMEWLKEFYQVAFEAGEKANTPLLDFEAFWAE
                     NKVLSFEAEHQNNTFVRYQDYRTDPIKHKLATPSGKIEIFSETIAKMNYEDCKGHPTW
                     FEHHEYSGKTNEAEPLALVTPHIKYRLHSQLAYSSLRQYYEVNGREPMLIHTKDAADR
                     GITSGDIVRIFNKRGQVLAGAVVTDGIIQGTVALYEGGWYDPQDLGKTDTPLCKNGNP
                     NVLTRNEGSSKLGQGNAPNTTTVQVEKYVGDAPEVTVFKAPFFSE"
     gene            complement(8833..11439)
                     /gene="acnB"
                     /locus_tag="PXE92_001167"
     CDS             complement(8833..11439)
                     /gene="acnB"
                     /locus_tag="PXE92_001167"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014391308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HDL5760425.1"
                     /translation="MENFIENYQQQVDERAALGVVPQPLSAEQTAQLVELLKNPPAEQ
                     AVFLLDLFTNRIPAGVDEAAYVKAAFLADITKGVATSPLISPAHAVKLLGTMQGGYNI
                     ETLLSALDNPELAPIAVEALSKTLLMFDNFHDVKERADQGNPFAQQVLESWANADWFT
                     SRPKLAEKLTVTVFKVTGETNTDDLSPAQDAWSRPDIPLHALAMLKNERDGIFPDENG
                     HTGPIKQLEALKEKGFPLAYVGDVVGTGSSRKSATNSVLWFMGEDIPYIPNKRAGGVV
                     LGGKIAPIFFNTLEDAGSLPIEVDVTNLNMGDVIDIYPYAGKICKHNSDEVLAEFELK
                     TEVLLDEVRAGGRIPLIIGRGLTHKARVALGLPESDVFIKPQSVSESNKGYTLAQKMV
                     GRACGVEGVRPGQYCEPRMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAA
                     YPKPVDVITHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIG
                     ISFPAGSGLVAFAAATGVMPLDMPESVLVRFSGTMQPGITLRDLVHAIPYYAIQQGLL
                     TVEKKGKKNIFSGRILEIEGLEDLKIEQAFELSDASAERSAAACTIKLNKEPIIEYLN
                     SNITLLKWMIAEGYDDKRTLERRIANMQAWLDNPELLEADENAEYAAVIEINLDEIKE
                     PIVCVPNDPDDARLLSQVQGDKIDEVFIGSCMTNIGHFRAAGKLLSQAQGELPTKLWI
                     APPTKMDAGLLTEEGYYSIYGKSGARVEMPGCSLCMGNQARVANNANVVSTSTRNFPN
                     RLGQGANVYLASAELAAVSALLGKLPTPQEYLDYMNNLQKDKDDIYRYMNFDQINSYV
                     KKADNVIVQVAV"
     gene            complement(11459..12706)
                     /gene="icd"
                     /locus_tag="PXE92_001168"
     CDS             complement(11459..12706)
                     /gene="icd"
                     /locus_tag="PXE92_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDL5760426.1"
                     /translation="MQTQVQIPQGETIQLNQDGSLQVPDNPIIPFIEGDGIGVDVTPA
                     MKAVLDAAVEKAYQGKRKIAWMEIYAGEKANKLYGENTWLPDETLELIRQYHVAIKGP
                     LMTPVGGGIRSLNVAMRQGLDLYNCLRPIRYYDGTPSPVKHPELVDMVIFRENSEDIY
                     AGVEWVAGSPEANKVIEFLQQEMGVKKIRFTEDCGIGIKPVSKQGTQRLVRAALQYVI
                     DNNRKSLTLVHKGNIMKFTEGAFKEWGYQVAEEFGAKLIDKGPWMSLTNPKTGEEIII
                     KDSIADAFLQEILLHPTEYDVIATLNLNGDYISDALAAQVGGIGISPGANIGFEAAIF
                     EATHGTAPKIAGQNKGNPGSLILSGEMMLRHLGWVEAADLVVKAVSKTIANKTVTFDF
                     AEMLEGVTLRSTSEFAQDIIANM"
     gene            12940..14220
                     /locus_tag="PXE92_001169"
     CDS             12940..14220
                     /locus_tag="PXE92_001169"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005762304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDL5760427.1"
                     /translation="MSKATLTLETGEKLELNMQKGTLGYQTIDIQPFLKHKLFAYDPG
                     LVSTAVCRSNITYVDGDEGVLLYRGYPIDQLAKHSDYLEVGYMLLFGERPTKEEYKDF
                     VQLIKKHTLVHEQLTKFFSGFRRDSHPMAVMCGVSGALAAFYHDAIDVNNQAHRELTA
                     IRLLAKIPTLAAMCYKYSIGQPFMFPQNHLSYAGNFLYMMFATPCEPYEVNPVLERAL
                     DRIFILHADHEQNASTSTVRTAASSGANPFACIAAGIASLWGPAHGGANEACINMLKE
                     IGTVDRIPEFIARAKDKNDPFRLMGFGHRVYKNYDPRAKVMRETCHEVLKELNIDNPL
                     FEVALELERIALSDPYFIEHKLYPNVDFYSGIVLKAIGIPTSMFTVMFALARTVGWIA
                     HWKEMYLQGNIKIVRPRQIYTGHTKRDFEPMDKS"
     gene            complement(14293..15522)
                     /locus_tag="PXE92_001170"
     CDS             complement(14293..15522)
                     /locus_tag="PXE92_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760428.1"
                     /translation="MFQAEPKNGKVTVEVLKQYLIDELKIDEEEIAIVIGNQHELDNI
                     DLFNPQCKINYIITVEALKEGWDCPFAYIFCSVQNVSSSKEAEQLLGRVLRMPYAKHR
                     QIEDLNRAYAPLSSKSFGETARNLQDKLIGMGFEALEVAEMLRIPQQENWIGNEGDLF
                     YTPTTVLALTQLPEMSDLSEAKRSQLKITEQEGHILVQVKGNLSEKLEKALIRTATGK
                     KKEQIEQQLQIHQNRVEILSSPAEKGEIFKVIPQLCMNIQGEFDLADSQVLLDYQSWN
                     LLDYPAKLDGFRLQENSQSFEIDVEDKRVSYHFNQQQLSFSDDWLRNPVKRGFSLPLA
                     HQNFYPDFIVELIDGRILIVEYKGEQLKSNEDSKEKALIGNLWEKLSQGKGLFIMAVK
                     SDENGQDVRTQLLNKLA"
     gene            complement(15489..16478)
                     /locus_tag="PXE92_001171"
     CDS             complement(15489..16478)
                     /locus_tag="PXE92_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5760429.1"
                     /translation="MKLKNYQNEALNRVSHYFSACLQSDAKTAFSQIQPEYSYKIPSE
                     HSNLRDVPYVCVRIPTGGGKTLLASHSIARIAKQYLDCDFPVTLWPVPSRTIKTQTTE
                     ALKNPQHPYRAVLDKTFNREVMVIESEDFDLLRPQDFGNKAIVIVSTIQNFRVENQDG
                     RKIYAFNEKLTAHFERLLPHIQANLEKISTTDLQENGLTSKQTGKIKCSFANLLRAYQ
                     PLVIVDEAHNARTSLSFDVLSQLSPSAILEFTATPNTDRKAGSNVLYHVSASHLKAEE
                     MIKLPIVLTEHHNWQQAIDGAVINRGALAQKAQYESEYVRPIYCFKLSRKTAK"
     gene            complement(16494..17012)
                     /locus_tag="PXE92_001172"
     CDS             complement(16494..17012)
                     /locus_tag="PXE92_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5760430.1"
                     /translation="MNRRYIGIEIGEHAKTHVVPRLKKVIEGEQGGISKAVNWQGGGS
                     FRFCELGEEVFDAFGSLNPNIRFDDLAAHIWYLENHFPLQKNSEKSPLVGTFNGKAYY
                     LLYNGILGDKRPQSGNVLTRKLMAELPYFAEFIQQGMDIVVYGEACRLGEVQLAEKKI
                     TFKQIPYDVMSR"
     gene            complement(17022..17093)
                     /locus_tag="PXE92_001173"
                     /pseudo
     CDS             complement(17022..17093)
                     /locus_tag="PXE92_001173"
                     /inference="COORDINATES: protein motif:HMM:NF013704.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(17100..>17436)
                     /locus_tag="PXE92_001174"
     CDS             complement(17100..>17436)
                     /locus_tag="PXE92_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5760431.1"
                     /translation="KKTSSITLISELIIEDQWNKNTVEIEGEWRYSQKSIDEQLKNGD
                     YYIIKSLDFRPRRVFERSAEKKKIHNLISRAHYDMATNEDSASEHLELFGEDIAEDSF
                     DYPKPEKLI"
BASE COUNT         5020 a         3935 c         3251 g         5230 t
ORIGIN      
        1 atgagtgtaa tgtgtggcta aaaaatttga acaaacgaag cgacagcgtt agcaaaaact
       61 taaaatgatg tacggattta aaaatctgtt cgtttgcttg ttttataagc aaactaattt
      121 cgcataatta ttattatgtt aaatagatag ttaaaataac acatttaatt aaatcttttc
      181 gtgtttctct cctcctttat taaaaaagaa aacggtcaga ttggtaaaat ctatacctaa
      241 tatgaccgct tgtgaataca aaaaaattac ttcaattact tcaactgttt aaaggcttgc
      301 agtaaatcag ctttaatatc ttcaacgtgt tctaaaccaa cggaaaaacg cagtaaatta
      361 ttcgtaatgc ctcgtgtaat acgttctgct tccggaatat ccatatgggt ttgtgttgca
      421 ggataagtaa taaaactttc tgcaccgcct aaactttccg caaaggtaat caatttaatt
      481 gccttgagaa atttcgctac ccactcttct ttttgtaaac ggaaagataa cataccactt
      541 ttgcctgaat ataacacgct gtcaatttca ggttgctctg ctaagaattt agccagttcg
      601 gtggcattag actgatggcg ttccattcgt aatgccaagg ttttcatacc acgcacggca
      661 aggtaagaat caaatggcga cagcactgca ccggcacagt tttggaaata gaataaacgc
      721 tcggtcaaat tctgcccgtt tactttggta gcatcagaat ctttcgcaac aattaagccg
      781 gctaacacat cattatgccc cgaaagatac ttggtcgcac tgtgaatcac aatatcagct
      841 ccgtgctcaa tcggacggaa taacgctggg gttaagaacg tattatcaac gatcaacatt
      901 aaattgtgtt ttttcgcaat tttagcaatg gcagcaacgt cgcactcctc catcaatgga
      961 tttgacggcg tttccacgaa aatcgcctta gtattcggtg taatagctgc ttcaatcgct
     1021 gctaaatccg ctgtattaac ataaaccggc tttaatgtgc cgtgattttt gtggctaaaa
     1081 tcaaacaagc ggtaagaacc accataaaca tcgctggaaa taatccattc atcaggtgct
     1141 ttaaataatg acattactag ctgaatcgct gccattccag atgccatcgc aaaaccggca
     1201 tcaccgcctt ctaaatccgc aatcccctgc tctaatacag ctcgagttgg gtttttggta
     1261 cgggtgtaat cccagccggt agattcgcct aagccatcac gcccgtaagc agttgataag
     1321 ataatcggca ttgccaccgc ccctgtacga ggatcagttc tgttaccgat ttgcactaat
     1381 gtggtttcaa tattattgaa ttttgtcatt gttattatcc ttcaattaca gattatttag
     1441 atccaatacg tctgtcatat caaacaagcc attttgtttg ccatttaacc attttgcagc
     1501 acgcactgcg ccattggcaa acgtcattcg actagaggct ttatgtgcga tttcgacacg
     1561 ttcgccttca tcagcgaacc atacactatg ctcccctaca acatcaccgg cacgaatagt
     1621 agcaaagccg atttcatcac gtttgcgttc gcctgtaata ccgttacgtt caaatacgcc
     1681 atgagttttc aagtcacgcc caagagtttt ggcaatatgt tctcccattg ataaagccgt
     1741 acctgatggt gcatcaactt tatggcgatg gtgtgcctca atcacttcaa tatcacaata
     1801 atcgcccatt acttttgctg ctttttcgag cagtttaaac accagattca ccccaacgct
     1861 gtagtttgag gcaaaaacga taccgatttt ttcactcgct gctttgattg cagctttacc
     1921 tgcatcatca aaaccggttg tgccaatcac catttgttta tgatgagcca cacaaatatc
     1981 caaatgttct agcgtgcctt cagggcgagt aaaatcaatt agtaaatcaa aacctgctac
     2041 attttgggcg acatcatcag aaatcaccac acctaatgta ccaaccccgg ctacttcacc
     2101 agcatcacta cctactaatg atgaaccttt acgctcaaaa gcagacccta attctacgcc
     2161 ttgtgcatta tggacggctt gaattaattg acgccccatt cgcccaccgg caccgacgat
     2221 tccaattttt aatgtcatat ttgttcttcc tttttatatt tgttttttac aagcggttac
     2281 atttttaatt aattttgcaa atagctttct gatggcaatt taaaaggtgg gtgagaagta
     2341 aaatcaacaa tttgaataaa gttttcacct ttcacataat gtaaaatata ctcagaagta
     2401 taattaccaa atccttgact ggtatcatat tctggaatgc cgatatgata atgccataaa
     2461 gaatattttt gtgctttagc caccttctct gcccaataag gatcattcgt tggcacatca
     2521 tcagaacttt tatttcgacc agctagattt tccaatccat aaatttcaac gtgttgttta
     2581 aactgcagga ttttgactag atctttttca ggcaaatatt gcaattcggc tgaaattttt
     2641 gtaccaaata aaactttaat gcccatttgc aacacctttc aaccagtttc taaattcatt
     2701 aacattcgtt atatctttag gcacttcgtg aaaagtatca tttaaccgct ctttcattcg
     2761 ctctaagtca aaattaaatg cggttgcttg agagagttgc tgttcaattt tgcgaatatt
     2821 ggacttcata ttatccaata tagccattgt ccttgagcca tcagtaaaat actgttgggt
     2881 atcgaaaatc accaccttat tttgatttag gtattttttg aaatcgttta aatcaatttc
     2941 agcccaaaag tttggatttt tttcgatagt ttcaatacag gcaattaata attgatttgc
     3001 cattgtaata cgaaaattta acaatgagat ttgctgctct gttgcaggtt tatcatcagc
     3061 tgcgaaatca aatgccggat aaatcactgc aagcgtgtca gccatagata agggtaaatt
     3121 tttcatcatc tctccttacg gaagaagttg tcattatcta ctggattact taaaaaaaca
     3181 acttattcat tttatgctat ttttgcccca tcaccgcaat atgtaccgta atttcctcac
     3241 ggtcgtggta gaggtgttta gcttgcattt tgaaccaaaa cccgtgtttc gttagctctt
     3301 cttccaagaa attgaggcat agttgcactt cttgataacg ttttttcatc ggcagtttta
     3361 ggttgaaaat cgtttctcga caccaaccgt tagtcagcca ttttgcaatg agtttcgaga
     3421 tacgaatcgg ctgctctacc atatcacaaa ccagccaatc gatttgttta cgcttaggcg
     3481 gttggaattt aaacccatct tcagggcaat gctcaattct tccggtttcg tgtaaacttg
     3541 ctgccatttt gccgtgatcg actgcataga caaaaacacc acgtttgact aattgataag
     3601 tccaaccacc cggacaagcc ccaagatcga cccctaccat cgtatcatta aagcgttttt
     3661 tctcctctgc ttgcggaata aaagttaaaa tcgcctcttc taatttaagc gttgagcgac
     3721 taggtgcctc agccgggaat tttaaacggg gaatccccat aaaaaacggc gatttattat
     3781 ggttgtacgc atagcccaca tagcaagctc ccggacgagt aaataaaata tgcaagctca
     3841 cactaccctg catattttcc gatttcccca accaaccttg ttttttcaat gccgaccgta
     3901 atggcacagt aaatttacga cagaaagtta ataattcttt cgcttcgttg gtatccggtg
     3961 tttcgacaaa tacatcagaa ctttggcgag gattaagttc ggcatattgg gctaaaatcg
     4021 gcgaaattcg atcattttca gacagatttt gcaacaaatc cccaacaacc aacatttggc
     4081 gaacaaaaat aagctgttca aactttaacg cttgggctaa tcgatctgct tcccctgctt
     4141 gatagcactc aaaaatcaca tagccactat tttctttaag gttggcaaag ccaaaaatgc
     4201 cctgttgtgc agctttatcc gtgatttcgc ctgctacctc tttttcaaac cctgctcggc
     4261 aatataaggc taatttattg aacattaggc ttttctcaca ctgatataaa ttaacgcaat
     4321 ccaaccaagc ataaagcaga gaccaccaat aggcgtaagc caatgaatag tcggcacatt
     4381 taacgccagt aagtacaggt tgccactaaa aagcagaatg cctaacgccc aattgcttcc
     4441 gatgatgtta aaggctttgg ctctacaaac gggtggattt tgcccaaaat ttgcaatttg
     4501 gaataaacct aaagctaaaa tggcaagggt gtgaaacatt tgatatttaa tccccgtctc
     4561 aatccagcct aaggctttag gcgataattg agccgataat gcgtggctgg ctatcgcccc
     4621 aaatgccaca gtaaataagc cgctgaatgc ggcaattgct acaaatttgt ttttcataag
     4681 ttgaagatag gtatgatgtt agatggctta ctatatcata ttatcgaaac caacaagcgg
     4741 tgaaattttg caaaaaaatt acaaaaaatc accgtttgta tgcttaatgg ttcaagataa
     4801 tatccacatc ttccgattta tcgtgaaccc caaatctatc tactaaggtt ttgctggcct
     4861 catttaatcc gataatttct acctcaacat cactttttcg atatttcaac acaactttat
     4921 ctaacgctga aactgccgtt acgtcccaaa agtgagcgtg ggttaaatca atgtggactt
     4981 ttttcagttc tgaacgggta aaatcaaatt gtgcgataaa atcatcagat gaggcaaaaa
     5041 atacttgccc gataacatca taacgcaatt cctctttctc tatagcactt gttttaaccg
     5101 ccatataacg tccaatttta ttcgcaaaga ataatgccga gagcaacacg ccggaaaata
     5161 caccaagggc taagttatgt gtataaacca caattgcaac agtgactaac atcactacat
     5221 taaagccgat tgggtgcgtt tttagctctt ttaaggaatg ccaattaaag gtgccgatag
     5281 agaccataat catcactgca actaatgcag ccatcggaat cactctcaaa atatcgctca
     5341 aaaagaccac aaaaatcagt aataatattg gcaatgccct gccctttaca ttcacggttt
     5401 ttatcgctgt ctgtctctgt catttcatca acaatcgttg ccgtcattaa agattccaat
     5461 aaccctactg cggccaagct gaaagaataa ggcaaaataa tccataaggt gtctaaatta
     5521 agcggaatat cgggtaataa aaacaccggt aaggtatcgg gtaattgccc catatcccca
     5581 acggtacgaa catcaatgcc ttgccataat gtgaaaagtg ttaaagcaat aatggtcact
     5641 aatggtgagg gaatgatttt tccaatcacc ggtacataag gaaaaagata aatgatagca
     5701 agccctgcta ccaccagtgc ataagtatgc caagttgtat tttgtaactc aggtagttgt
     5761 gccataaaaa ttaaaatggc aagtgcatta acaaacccaa tcactacggc tcgtgccaca
     5821 aaccgcataa gcgagccgag ttttaaccaa ccggcaataa tttgcaacac gcctgttaat
     5881 aaggtggccg ctagcatata ttgtaaaccg tgatccctca ctaagcctgc taataccaga
     5941 gccattgcac cggttgctgc agaaatcatc gccggtctgc cgcccacaaa actgataatt
     6001 actgcaatac aaaatgaggc atataaacca atttgtggat caacccctgc aataattgaa
     6061 aatgctatgg cttctggaat taacgccaaa gccaccacta aaccagagag aacatcacct
     6121 cgtacatttg aaaaccattg ttgtttaatt accgtaggcg aaaattgctg aaataaagtt
     6181 gtcattatta cccttaaata aaaagaaaag ccgagcaaag tcggctaaaa atgaggcgag
     6241 agagtagcaa attagtgaaa agtcgtcaaa taaacaagcg gtcttctttc gctctttttt
     6301 tgcaaaaaat agtagaaaaa tgaccgcttg gattaattgc tattcactaa aaaaaggggc
     6361 tttaaacacc gtcacttcag gtgcatctcc cacatatttt tccacttgaa ccgtggtagt
     6421 gttcggtgca ttgccctgcc cgagttttga tgaaccctca ttacgggtta gcacattcgg
     6481 gttgccgttt ttgcatagtg gagtatctgt tttgcctaaa tcttgcgggt cataccaacc
     6541 accttcgtat aacgctactg tgccttgaat gatgccatca gtcaccactg ctcctgccaa
     6601 cacctgccct cgcttgttaa aaattcgcac aatatcaccg cttgtaatgc ctctgtcagc
     6661 ggcatctttt gtgtgaatta gcattggttc tctgccgttt acctcgtaat attgacgtaa
     6721 tgaggagtaa gcaagctggc tgtgtaaacg gtatttaata tgcggtgtaa ctaatgccaa
     6781 cggctcggct tcgttggttt tgcctgaata ttcgtgatgt tcaaaccaag tcgggtgtcc
     6841 tttacaatct tcataattca tcttggcaat ggtttcggag aaaatctcaa ttttgcctga
     6901 tggcgttgcc aatttgtgtt taatcggatc agtacgataa tcttgatagc gaacgaaagt
     6961 attattttga tgttctgcct caaagctcaa cactttattt tccgcccaaa atgcctcgaa
     7021 atccagcaat ggcgtattag ctttttcccc cgcctcaaag gcaacttggt aaaattcctt
     7081 aagccattcc atttcgcttt tgccttcggt aaatgcttgt tctttaccgg ctcgtttcgc
     7141 taattcggca aaaatatcgt aatcattctt cgcctcaaat tgcggttcaa ccacctgttt
     7201 catcgggata atatgttttg ctacataatc accggcaacg gtgagatcgt ttcgctcgta
     7261 gctggtggtt gcgggcaata caatatctgc cattcgagcg gtcggtgtcc agtaacattc
     7321 attgacgatc atcgtttccg gctgttgcca cgctttcact aaatagttgg tatccgggtg
     7381 gtgagcaaac ggattacccc ccgcccaata gactaatttg atgttcgggt aatgtaatgt
     7441 ttgcccgttg taatcataag gctgattcgg tttgagcaac gcatcggcaa ttcgagacac
     7501 cgggaaaaac ggcatatcgg ggttaggttt acctgcattg attgccccta aacgaacacc
     7561 ggaattaaca tttagcccat tggtagaata acgataattt aagccgaaac cgccgcccgg
     7621 caagccaatt tgcccgagca tagcggcaag agtcactaac gcccagtggc tttgctcccc
     7681 gtgttgcagg cgttgcaagc cccagccgga catcaacatt gtgcggtgag taacaaaatc
     7741 atttgctaag gttttaatca cctcctccgg aatgtcacaa atttggctcg cccactctgc
     7801 tgttttaggt aaattatctg cttttcctaa cacataatca gcaaattgct cgaaaccaac
     7861 agtatattta gttaagaagt cgtgatcgtg cttgttttca gtaataaggg tgtgggcgat
     7921 ccctaaaatc agtgcaacat ccgtgccggt attaataggc aaccactctg cctctaaaaa
     7981 ttgacaggtc tcgcttttca ccgggtcgat acaaataatc cgtttaccgc ttgcttttaa
     8041 tttggcgaga taatcaatcc cctccggttc ggcagaggtc cacgcaatgc gaagtgtatt
     8101 cagtggatta gacgaccaaa ttaccaataa ttctgtgctt tctacaattg tgtgccaact
     8161 ggtttgttga gcatacacct caatattgcc taatacataa ggcataatca cttgcaccgc
     8221 accggtggaa taatcgcctt tagtattggt aaagccgcct gtgacgttta aataacgttg
     8281 caaaagcgtg cgagaggcgt gcagtgaacc actgctatac cagccgtaag aaccgccgaa
     8341 aatggattcg ctgccatatt gctctcttac ccgttggatt tcgccggaaa ccagctcaaa
     8401 ggctttgtcc caagagattc tcacccactt atctcgccct cgcaaagtgg tgtctttatt
     8461 cccttccaag tagcctttcc gcaccatcgg atatttcacc cgaaccgggc tatagagctg
     8521 atccgccacc acatcttgca attcgttttg gtgatttttc gctaaactgc cctctgattt
     8581 caccactttt ccgttttcca ccgttacatt taatgcaccc cagtgggcgg cggtggtaat
     8641 ggtatttttc ggtttatcca aaaagacaaa cttccctttt tctaatgctg tgttcattta
     8701 aattaatgcc ttttctgtta caaaattgag aggaatttac tggattaagc caaaagttgc
     8761 aaccacaagc ggttgttttt agccaaaaat ttgcaaaaca aaacccacct aaaaaggtgg
     8821 gcttcaagga agttaaacgg caacttgaac gattacattg tccgcttttt tcacataact
     8881 attgatttgg tcaaagttca tatagcggta aatatcgtcc ttatctttct gcaagttatt
     8941 catatagtct aggtactctt gcggtgtcgg caatttaccc aataacgcag aaactgcggc
     9001 taattctgct gaggctaaat acacatttgc cccttgccct aaacggttcg ggaagtttcg
     9061 ggtagaggta gaaaccacat tagcattatt tgccactcgg gcttggttac ccatacagag
     9121 agaacagccc ggcatctcta cccttgctcc gcttttgccg taaatgctgt aatagccctc
     9181 ttcggtcagc aagcctgcgt ccattttagt cggcggagca atccataatt tagtcggcaa
     9241 ttcgccctgt gcttggctta acagtttacc tgccgcacgg aaatgcccga tattagtcat
     9301 acaagaacca ataaagactt catcaatttt atcgccctgt acttgagaaa gcaggcgagc
     9361 atcgtcaggg tcattcggta cgcacacaat cggctctttg atttcatcta agttgatctc
     9421 aatcactgcg gcatactccg cattttcgtc tgcctctaaa agctccggat tatccaacca
     9481 cgcttgcata ttggcgatac ggcgttctag cgtgcgttta tcgtcatagc cttccgcaat
     9541 catccatttt aaaagcgtaa tattagaatt cagatactcg ataatcggct ctttgttgag
     9601 cttgatggta caggctgcag cagagcgttc agcagaagca tcagaaagct cgaaggcttg
     9661 ttcgattttc agatcttcca acccttcaat ttctaaaatt cgaccggaga aaatattttt
     9721 cttacctttt ttctccaccg tcagcaagcc ttgctgaatg gcataatacg gaatagcgtg
     9781 aaccagatcc cgtaaggtaa tgcccggttg cattgtgccg gaaaaacgca ccaagaccga
     9841 ttccggcata tctaacggca tcacccctgt tgccgcagca aaggcaacta agcccgaacc
     9901 ggcagggaat gaaatcccga ttgggaaacg ggtgtgggaa tcgccgcctg taccgacagt
     9961 atccggcaat aacatacggt ttagccaaga gtgaatcacg ccatcacccg ggcgaagtga
    10021 cacaccgcca cggttcataa taaaatcagg caaagtgtgg tgggtaatta cgtccaccgg
    10081 tttcgggtaa gcggcagtat ggcagaacga ttgcatcaca agatctgccg agaagcctaa
    10141 acaggctaaa tctttcagct catctcttgt cattggtcct gtggtatctt gtgaaccgac
    10201 agacgtcatt cgaggctcgc aatattgccc cggtcgaacg ccttctacgc cacaagctcg
    10261 ccctaccatt ttttgagcaa gggtgtagcc tttgttactc tctgaaaccg actgcggttt
    10321 aataaataca tcactttcag gcaagccaag tgctactctg gctttatggg tcaaaccacg
    10381 tccgataatc agcggaattc gcccgcctgc acgcacttca tcaagcaata cttcggtttt
    10441 tagctcaaat tcggctaaga cttcatcgga gttgtgtttg caaattttgc ctgcataagg
    10501 gtaaatgtcg attacatcgc ccatattcag gttggttaca tccacttcga tcggtaaaga
    10561 accggcatct tctaatgtgt taaagaaaat cggggcaatt ttaccgccta acaccacccc
    10621 accggcacgt ttgtttggaa tgtaaggaat atcttccccc ataaaccaaa gcacggagtt
    10681 ggttgcggat ttacgagaag agccggtgcc gactacatca ccgacatagg ctaacgggaa
    10741 acctttttct tttaatgctt ccagttgctt aatcgggccg gtatgaccgt tttcatcggg
    10801 gaaaataccg tcacgttcat ttttcagcat tgctaatgcg tgaagtggaa tatcagggcg
    10861 agaccaagcg tcttgagccg gggaaagatc atcggtattg gtttcgcctg tgactttaaa
    10921 taccgttacc gttaattttt cggcaagttt cgggcgagag gtaaaccaat cggcattcgc
    10981 ccaagattcc aatacttgtt gtgcaaacgg attaccctga tctgcccgtt cttttacatc
    11041 gtggaaatta tcaaacatca ataatgtttt agataaggct tctaccgcaa tcggtgcaag
    11101 ctcagggtta tccaacgcag acaataaggt ttcaatgtta taaccacctt gcattgtgcc
    11161 gagtaatttc actgcgtgag caggcgaaat gagcggcgat gtggcaaccc ctttggtaat
    11221 atcggctaaa aaggcggctt taacataagc ggcttcatca acacctgccg gaatacgatt
    11281 ggtaaaaaga tccaataaaa agaccgcttg ttcagccggt gggtttttca ataattcaac
    11341 cagttgagcc gtttgttccg cagaaagtgg ctgaggcaca acacccagtg ccgcacgttc
    11401 atcaacctgt tgttgataat tttctataaa attttccatc atcattccct ctccaacttt
    11461 acatattggc aataatgtct tgtgcaaatt ctgaggttga gcgtagagtt accccctcca
    11521 gcatttccgc aaaatcaaag gtgacagttt tattggcaat ggttttagac accgctttta
    11581 ccactaaatc agccgcttca acccaaccta aatggcgtaa catcatttcc ccacttaaaa
    11641 ttaatgaccc aggattgcct ttattttgcc ctgcaatttt aggggctgtg ccgtgtgtgg
    11701 cttcaaaaat agccgcttca aacccaatat tcgctcccgg tgaaataccg attccgccta
    11761 cttgtgcggc taaagcatca gaaatatagt cgccgtttag gttcagtgta gcaatcacat
    11821 catattcggt tgggtgtaac aagatttctt gtaaaaaggc atcggcaatg ctgtctttta
    11881 taatgatttc ctcaccggtt ttcggattag tcaagctcat ccaagggcct ttatcaatta
    11941 attttgcccc aaattcttcc gcaacttggt agccccactc tttaaatgct ccttcggtaa
    12001 atttcataat gttaccttta tgcacaagcg tgagcgattt acggttgtta tcaattacat
    12061 attgcaatgc agcacgcacc aagcgttgtg tgccttgctt agaaaccggc ttaattccga
    12121 taccgcaatc ttcggtaaag cggatttttt tcacgcccat ctcttgttgt aaaaattcga
    12181 tcactttatt ggcttcaggc gaaccggcaa cccattctac accggcataa atatcttccg
    12241 agttttcacg gaaaatcacc atatccacca gctcagggtg tttaaccggg cttggcgtac
    12301 cgtcataata acgaattggg cgtaagcagt tgtataaatc taatccttga cgcatcgcca
    12361 catttaaaga acgaataccg ccacccaccg gtgtcattaa aggaccttta atcgccacgt
    12421 gatattggcg gataagctct aaggtttcat ccggcaacca agtgttctca ccatataatt
    12481 tattcgcctt ttcgcctgcg taaatttcca tccaagcaat ttttcgcttg ccttgatagg
    12541 ctttttctac cgccgcatct agcactgctt tcattgcagg agtaacatca acaccgatgc
    12601 cgtcaccttc aataaatgga ataatcggat tatccggaac ttgtaaagaa ccgtcttggt
    12661 tcagttgaat agtttcgcct tgtggaattt ggacttgtgt ttgcattgat tttacccccg
    12721 taatgacgaa aaagtagtga cgaaaaatga atgttgacaa tcagccaaca atggattaac
    12781 tataaacagt aaatttctaa atgtaaataa agcaaaatgg gctgagagag aatttgtgat
    12841 ctaacgcaca tttatgtaaa taaaatgtaa aaaatcgttg tgattctttt ggaaatcatc
    12901 tagtttatct tataaatctc aaataaatag gagtaagcta tgtcaaaagc aacattaaca
    12961 ctcgaaacag gtgaaaaact tgaactcaat atgcaaaaag gaaccttagg gtatcaaacg
    13021 attgatattc agcctttctt aaagcataag ttatttgctt atgatcccgg attggtttcg
    13081 accgctgtat gccgatccaa tatcacttat gttgatggcg atgaaggggt tttactctat
    13141 cgaggctacc cgattgacca attagccaaa cattctgatt acttagaagt cggttatatg
    13201 ctgttattcg gcgaacgccc taccaaagaa gaatacaaag acttcgttca actcatcaaa
    13261 aaacacactc ttgtacacga acaactaacc aaattcttct ccggtttccg ccgagattcg
    13321 cacccaatgg cggtgatgtg tggggtaagt ggagctttgg ctgccttcta ccacgacgcc
    13381 attgatgtaa acaaccaagc ccaccgtgaa ttaaccgcca ttcgtttgtt agccaaaatc
    13441 ccaacccttg cggcgatgtg ttataaatac tctatcggtc agccgtttat gttcccacaa
    13501 aaccacttat cttacgccgg caacttctta tatatgatgt ttgccactcc ttgtgaaccg
    13561 tacgaagtga accctgtgtt agagcgtgcg ttagaccgaa ttttcatttt acatgcagac
    13621 cacgaacaaa acgcttcgac ctcaaccgtg cgaaccgccg cttcatcagg tgcaaaccca
    13681 tttgcttgca ttgctgccgg tattgcctct ctctggggac ctgcacacgg aggagcaaat
    13741 gaagcctgta tcaatatgtt gaaagaaatc ggcactgtgg atcgcattcc tgaatttatt
    13801 gctcgagcca aagataaaaa tgacccgttc cgcttaatgg gctttgggca tcgtgtctat
    13861 aaaaactacg accctcgtgc gaaagtaatg cgtgaaacct gccacgaagt gttaaaagaa
    13921 ctgaacattg ataacccact atttgaagtg gcattggaat tagaacgtat tgcgttaagc
    13981 gacccttatt tcattgagca taaactttat ccaaacgtag atttctactc cggaatcgtg
    14041 ctaaaagcca tcggtattcc aacctcaatg tttaccgtaa tgtttgccct agccagaacc
    14101 gttggctgga ttgctcactg gaaagagatg tatctccaag gcaatatcaa aatcgttcgt
    14161 ccacgtcaaa tctacaccgg acatactaaa cgtgattttg agccaatgga taaatcataa
    14221 gattggcaaa aaatcgaaaa attttaaccg cttgtttcca caagcggtta tattttgcat
    14281 aaaatttgca aatcaggcta atttatttag cagttgtgtt ctaacatctt gaccattttc
    14341 atcgcttttt acagccataa taaataagcc ttttccttga cttaatttct cccaaagatt
    14401 gccaattaag gctttttctt tagaatcttc attacttttt aattgttccc ctttatattc
    14461 cacaattaaa attcgaccat caataagctc tacaataaaa tcagggtaaa aattctgatg
    14521 agctaatggt aaagaaaacc ctctttttac aggatttctt aaccaatcat cagaaaaact
    14581 cagttgctgc tgattaaaat ggtaagaaac ccgtttatct tccacatcaa tttcaaaact
    14641 ttggctattt tcttgtaatc taaatccatc aagtttggct ggataatcca ataaattcca
    14701 actttggtaa tctaatagca cttgtgaatc agctaagtcg aattcgcctt gaatattcat
    14761 acacagttga ggtattactt taaatatttc ccctttttcg gcaggagaag ataatatttc
    14821 aactctattc tggtgaattt gtaactgttg ctcaatttgc tcttttttct tacctgttgc
    14881 agttcgaatc aacgcttttt ctaacttttc acttaaatta ccttttactt gcactaaaat
    14941 gtgaccttct tgctcggtaa ttttaagttg agaacgtttt gcttcgctta aatcagacat
    15001 ttcagggagt tgcgttaatg ctaaaactgt tgtcggtgta tagaataaat ctccttcgtt
    15061 tccaatccaa ttttcttgtt gtgggatacg aagcatttca gctacttcta atgcttcaaa
    15121 ccccattcca atcaatttat cttgtaaatt acgagccgtt tcgccgaacg acttagagga
    15181 aagcggagca taagcacgat ttaaatcttc aatttgacgg tgtttagcat aaggcattcg
    15241 caatactcgc cctaatagct gctccgcttc cttgctagag gaaacatttt gtactgagca
    15301 aaaaatataa gcaaaagggc aatcccaccc ttcttttaat gcctcaaccg tgatgatgta
    15361 attgatcttg cattgtggat taaataaatc gatattatct aattcgtgtt gattacctat
    15421 cacaatggca atctcttctt catcaatttt taactcatca attaaatact gttttaagac
    15481 ttctactgtt actttgccgt ttttcggctc agcttgaaac aataaatcgg acgaacgtac
    15541 tcgctctcat actgtgcttt ttgtgctaat gctcctctat tgattacagc cccatctatt
    15601 gcttgttgcc agttgtgatg ttcggtcagc acaataggca atttgatcat ctcttctgct
    15661 tttagatggc ttgccgaaac gtgatacaac acattacttc ctgcttttct atctgtgttt
    15721 ggcgtagcag taaattctaa aatagctgat ggggaaagtt gagatagcac atcaaaagag
    15781 agtgaagtcc gagcattatg tgcttcatca acaatgacca aaggctgata agctcgcaac
    15841 aaatttgcaa aagaacactt aattttgccc gtttgtttgg aggttaaacc gttctcttgt
    15901 agatcagtag tggaaatctt ttctaaattt gcctgaatat ggggtagtaa acgctcaaaa
    15961 tgagctgtta atttttcatt aaaagcatag atttttcgcc catcttgatt ttctacccga
    16021 aaattttgaa tagtagaaac gattacaatc gccttattac caaaatcttg tgggcgaagt
    16081 aaatcaaaat cttcagactc aataaccatt acttctcggt taaaagtttt atcaagtact
    16141 gcacggtaag ggtgttgcgg attttttaat gcttctgtag tttgggtttt aattgtacga
    16201 gaaggcactg gccacaaggt aaccgggaaa tcgcaatcca aatactgctt tgcaatacga
    16261 gcaatactat gcgaggctaa caacgtttta ccgccaccag ttggaattcg tacacaaaca
    16321 taaggcacat cacgcaaatt actgtgttca cttgggatct tgtaactata ttcaggttga
    16381 atttggctaa atgcggtttt tgcatcagat tgcaaacaag ccgaaaaata gtggctgaca
    16441 cggtttaatg cctcattttg gtaatttttt aatttcattt ttttctccta ctattaacga
    16501 gacattacat catatggaat ctgtttaaat gtaattttct tttcagctaa ctgcacttct
    16561 cctaaacggc acgcttcgcc atataccaca atatccattc cctgttgaat aaattcagca
    16621 aagtatggta actccgccat taattttcgt gtcagaacat taccactctg cggacgttta
    16681 tcgcctaaaa ttccgttata taacaaatag taggctttgc cgttgaaagt gccgacaagc
    16741 ggtgattttt cgctgttttt ttgcaaaggg aaatgatttt ctaaatacca aatatgggcg
    16801 gctaaatcgt caaaacgaat gttcggatta agtgaaccga atgcgtcaaa tacttcctcg
    16861 cctaactcac aaaagcgaaa cgatccacca ccttgccaat ttactgcttt tgaaataccg
    16921 ccttgctcac cttcaattac ttttttcaac cgtgggacaa catgggtttt agcatgttcg
    16981 ccaatctcaa taccgatata acgacggttc attttatgag caactgctgc agttgtacct
    17041 gagccaagaa agctatcgag gacgagatca tatggttcag tcgatgcttc taatacaaat
    17101 tagattaatt tttcaggttt aggataatca aatgaatctt ctgcaatatc ctccccaaat
    17161 aattctagat gttcactagc agagtcttca tttgttgcca tatcataatg agctctgcta
    17221 attaagttat gaattttttt cttttccgca cttcgctcaa atactctcct tggtcgaaag
    17281 tctaaacttt ttataatata gtaatcacca ttttttaatt gctcatcaat acttttttgg
    17341 ctataccgcc attcaccttc aatttctacc gtatttttat tccattgatc ttcaataatt
    17401 aattccgaaa tcaacgtaat tgaactcgtt ttttta
//
LOCUS       DANMBQ010000041        16976 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.041, whole genome shotgun sequence.
ACCESSION   DANMBQ010000041 DANMBQ010000000
VERSION     DANMBQ010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16976
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.041"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..9482)
                     /locus_tag="PXE92_001175"
     CDS             complement(<1..9482)
                     /locus_tag="PXE92_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
                     /protein_id="HDL5760432.1"
                     /translation="MNKHCFRTIFSKTLQRIVVVSELAKLAGKSESESMTSGAILQKI
                     CKIRPLAFSLFCALGFVTLSDNAMAETLIIQADSTAPKNQQPIILQTANGLPQINIQT
                     PNDKGLSHNKYSQFDVAEKGAILNNSRTNTATQQAGMVQGNPYLARGEAKVILNEVNS
                     SKPSVMKGYVEVAGKKAEVIIANPSGLHCDGCGIINADRATLTTGKPQINQGNLEGFV
                     VEKGKVTVAGKGLDNSRVDYTDILAREAKINAGVWSKKETKVITGKNTVKRSNSDNNL
                     QIIHTNQPLAGEEKPTVAIDVGELGGMYAGKIHLIGTEQGVGVRNAGHIGASADTLTI
                     DSQGRIVNSGTFNAQRQVQLNAQHGIDNQGKIENKQGNIQLNSKADIQNSGSIVARGG
                     NIQKKAETKIQQSGETVAKGNITYTARQIHADKNSLIAAGVDVTDTAQGEVRKLEAQS
                     VAGKTIQLTAPEKTTVQGKNIASGKINVAAAEIDANQSQNNAHTVEYSAKSGDIQANS
                     AQFSANQIKLTTPKWLSTEGSQLTAEVIEAQQANLNARGSVWKQTGEQDFRLKAESIH
                     TDSARFSVGGHFEIDGNRLTNNQGLLSSGKRLGLNLNDAVDSVDGKLVAKGELSIRAP
                     LLNNQQGLILSGEKQAITVNTLKNQSGVITSQTEQTLDITSELQNQGGRISASGVAIN
                     AQSLDNREQGEISSVKELALTVSQQVDNRHGVIQSVGNLTLNSTLLDNQGGVLKSATD
                     ITLNVPTVLNNRISENGSLIEAGGSLTMNSFEVENQGTLARQPQPIQGIIASQFVLNS
                     TKQLNNEKGGIYIGSSARFTLSDSLNNRNGEILSWGDLAIFGGKSLTMTNTEGKVSAN
                     NGLEITAKALSGDGDVQAGDIRLNLQENFDITKDINANRSMIIQTEGDILNRKKLAAN
                     DRLQLTANQITNAQNARISSADTRLTATSTVYNEGLINSRSDNDNAQTVIKAQEIHNI
                     GTGNIYGDKVALGAERILNQDKDGTSATIAARQSLGLAAKVIENNTLVYEANKKSGSL
                     IYSGGEIAIGRQLNEQDTVIGNAGQLHNRSSIIEAEGRIQLNADKVANVNSHYRSELE
                     TTDRQTVNEHFILPRDKHNRGGSDVYDNGHLPTINVNQLRKGYYRKTWSYWQKYDEAN
                     LPVITDISQLNATTVLAKPYAQSCANDESVDCTLLPAGNYKKDNPVWTWFNLTPPAED
                     APEMTPEIIQAMNEEDLANQHLSEAEQEKLQKEQGQGIAPVVPARPIEPVRGSTETEA
                     QYQKRLQTYQAELKAYEAAEAAYQRYVLLKPLIDWEAKYGANIQALDEAIAKHNKANL
                     SQEYPHFWNLWIKERMVKENITKASLPAQILAGGDLTYQSDEFINDKSWVIAGKALNP
                     IGRSRIANLDDADAVRQDWELGRRQFSFTEYHGGTRRRHSRYDENDGPLARLKEVHKD
                     MNIFVELENTSPTAYTDYVDAKAANAVKPEGNQVERGNLPDAPNPPTMAIERIPSPNA
                     AAFEVRSMTVDTRLPNQGLYRINPQADSHVLIETDPDFTDKKRWLSSDYMFNALRHDH
                     NNVHKRLGDGFYEQRLIREQINRLTGRQFLGDYTDFDSQYKALMDAGITFAQKFNLRL
                     GITLSPEQVASLTSDIVWFETQTVRLPSGETVSVLVPKVYVLARKGDIDGKGSLISAD
                     ALTINSKEIVNQGTIAGRRLAQFNAERLENSGTLSGGVLAAKVSGDLENIGGKIEADK
                     AILLDIAGNFNHTSTTRTTQIDLDGFKRAETNLDRKALLHVKDENGLLQVQAGNITSA
                     GADIINDGQGQTYLSAKNQLNLTALQVGFDEKMGGGNHYRNEALNDVVISRVQGKGDV
                     VVSGKNLYSEGADLDAKARLALLAENDMVLGSATRSRDYEEYHKTKSGGALAKKTKTT
                     YDNISETEHKGTELTGEDILVKAGHDIQGESLLAVSRSGDIDIIGGNNVTLSSATNQL
                     SEQHIRETKRSGFLNGGEIGFTIGSQKTRQENSLEGAIQSTARNTLGSEGGNIRIQAG
                     NKASVSNVDVLISNEKTAVISGKNGVRVESGKDVINSTDNYEFSQSGLSIALSTPVTD
                     AVQSARQSVQKAKATQNEKLKGVYAVKAAEDAVIAAQNAQKVAETLGNLGNALTENHA
                     AAENPAVKISVSLGTQKQQRESRSQSVTHSKSTLNGGNIALISGAGKVALEGVDTRVK
                     DTLLLDGKLGIESKGVADTYQNNTKNKNHSASVGVFIGLDRDSFGIGFEAGVSGGKGK
                     ENIETETWQNNQLQAGKIVTNSANGKLMLDATNVKANHWEGEVQDFEARSRQDISKYK
                     SEYTEGSVHGTLAVGTTGVNGHVAYNGAKLNTAQVENQTAIDIGKSGMDVKVKKNAHF
                     EGAVMTSQAEKENNRFQAGTLTTGDIENHSELKTRSVAISGGTSGVNPMSALSLLGNK
                     NESERSTTKAAIGENIAITLTEDLNAETTLNHLNRDTQNANQKVTKYDISEVKETQEL
                     VKGIGEIAEKAYQIYTHSEREKVTEAKLELGKAQAQKASKEEIGKLEANLDRLQKEFD
                     KNYGTGSKTKRAVEAVTAALQGLAAKDVGQAAVGLASPYLNAEIKKYTEGDTQANLIA
                     HALLGAVEAAATGNNVLAGAAAGAGSEAAADFIVKTLYKGKSTQDLTEAEKQNVALLS
                     QLASGLASGLIGDSTQSAAVGADIGKRAVENNYLSNWQEQKRSQELKSCHGDARCENQ
                     VRLYWGLVDIGQDVSFVSGAVAGVPENLAESVEGLISMFSSPIETIVAMKELIAREDT
                     LSYIANMTKQEYLAKLDKMQVYYEQAGAVGSFNAGKEFGNMMTDVVTALTGAGALVKT
                     GVGTTAKIVTKSGKELAIPKTRSSASLGTCSFHGDMEVKTDKGYRQISSIKVGDKVLA
                     KNERTGITTYQKVQAHYSNPYDYTVYVEVADSKGKYHTIVSNKIHPFFTQVLSGRVPI
                     SSEGHSYNGEIAKAQWVDAQHLQKGYRLLAESGEWQTVTKVKIKQERLKAYNMTVEKD
                     HTYFIRGTNADNEGVWVHNDCWHALPNDAKQVKNIDGYKAYQFTDPKDGKVVTVVQKD
                     LNRFETPNHQAGVDPHFNRLSQQIDAETGRYLSTDNPVDGLYNRAYLRSETLQKIYAN
                     YEKLPNGNYRNKLTRQEIEQPIDIGHMYGWEHRRLSLAAKEL"
     gene            complement(9534..11309)
                     /locus_tag="PXE92_001176"
     CDS             complement(9534..11309)
                     /locus_tag="PXE92_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL5760433.1"
                     /translation="MKTPQNLILSTVLLSASFVAEANSSSLVQQARIDATQQQIDAAQ
                     QHRQQQYQQNQAEKFQPKADVRLETQINDTLTLSNHELPCYPIHQITLIDYSPDNSLT
                     TSQFQWAFEKAVKSFHLTLPHCFGGEGLAVLMKQIQNEIIGKGYVTTRVVTAEQDLRG
                     GKLVLTVIPGKIRNTLVVDSGKVPRFTKLHALTGFTFAEGDILNVRDIEQSLENLKRV
                     PTAEANIEILPSSSEKAEVGDSDLKISYSQAFPFRLNLGLDDAGSKSTGKLQTSATLS
                     IDNIFSANDLFYTSFTHSMKQKGDDNGRRASKNLTLYYSVPFGYWQLAFSHTHHRYHQ
                     EVFGAFDKSYLYAGESDTDKLTFSYLLYRDAKRKTSLSGSLWPRQSQNYIDGSEIEVQ
                     KRRMAGWEAGFSHKEYFPTATLELSANFKRGTAARGALSAPEEDYGEGTSRPKIITAS
                     ASLTKPFFWGKQPWQWQSSLNAQWNKTPLVPQDRFSIGGRYTIRGFDGELTLSGERGW
                     NWRNELSWQFNPNHAFYWAVDGGRVSGWATENQLGHHLMGTAIGFRGGVKGFSYDVFA
                     GRPMRKPEGFKTSDTVAGFNIGYNF"
     gene            11464..12549
                     /gene="queA"
                     /locus_tag="PXE92_001177"
     CDS             11464..12549
                     /gene="queA"
                     /locus_tag="PXE92_001177"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDL5760434.1"
                     /translation="MLVSDFHFNLPDELIARYPTAERSASRLLHLNGETGEFADQQFV
                     DLYDHINEGDLLIFNNTRVIPARLYGRKPSGGKVEALVERVLDEHRCLAHVKASKAPK
                     EGAELIFGEDKLGEGKGFTATMVARHDTLFELVFNEEQPLFELLQQAGHMPLPPYIDR
                     PDEDADQERYQTVYSKVLGAVAAPTAGLHFDNAMLEKLKAKGVDTAFVTLHVGAGTFQ
                     PVRVETIEDHKMHAEYAEVSQEVVDKILATKAKGKRVIAIGTTSVRSVESAAQAAEKD
                     GKLIAPFFSDTAIFLYPGKTFKVIDALVTNFHLPESTLIMLVSAFAGYRNTMNAYAHA
                     VETKYRFFSYGDAMFINKNPNALSDVP"
     gene            complement(12576..13114)
                     /locus_tag="PXE92_001178"
                     /pseudo
     CDS             complement(12576..13114)
                     /locus_tag="PXE92_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(13127..15409)
                     /locus_tag="PXE92_001179"
     CDS             complement(13127..15409)
                     /locus_tag="PXE92_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HDL5760435.1"
                     /translation="MTLDRFCIALILFHLPILWLPKAFLFVGIVIGTLVLILSVYLRS
                     KLTAVLGLLVCIGYIQIIQVAKNAEKTTASKTPVQFEISKILKQTDYQTAIATLNTGE
                     KIYLNWQSKQPLLLNQFYQAELALRPISARSNIGNFDRQRWYFANHINMTATVRKVET
                     LAKTDYSLRTNWLNKVKAETDALPTQGFLLALAFGERAWLKTEHWGQFQQTATAHLIA
                     ISGLHIGLAMLFGVYFAKGVQWLCLKSELTALQAVGFSLYFARIVSFITAFGYSYLAG
                     FAVPTARALLAIAFVLLCQVLRRHYTPWQYWGRIVALLILIDPLSLLSDSFWLSILAV
                     ASLILWYQYFPLSRFLNDEYRKKITKFNRLWLSLLHLQIGIWLIFSPVQLYFFEGISA
                     FALLANLIIVPLYSFLLVPLILFTLLTDNLFSTWLLADYLAQFSLWLLDPFSNAWFAL
                     SHWQQWQLLSLNLLVLVLLYCKLYRLSYKKWLSAVAVSLLFNLSFYLPKLFNQTQTEW
                     IMFDVGQGLAMAFIYQQNKAVIYDTGSSWQANDGSRNSMAKMEILPYLKRNGIEVEAI
                     FLSHDDNDHSGGVVELLQAYPKARLISSSKVTYHNINPEPCIAGTSWQFGEWQLLAIY
                     PSHIAERAKNQDSCVILAKNDRLKILLTGDSGVEQERQFAHQLGKIDFLQVGHHGSKS
                     STGETLLSITQPAFAVISAGRWNPWKLPNKQIIERLNRRHINVLNTVETGMIRVKFYP
                     SSIEIEQARGAFSPWYKQFY"
     gene            complement(15551..16765)
                     /gene="sstT"
                     /locus_tag="PXE92_001180"
     CDS             complement(15551..16765)
                     /gene="sstT"
                     /locus_tag="PXE92_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HDL5760436.1"
                     /translation="MSQSLSSKILGGNLVLRIAIGLVLGVLLAFINKEWATSVGVLGQ
                     FFVKSLRAIAPILVFVLVLAAIANKEVGSDSKLKPILVLYVLGTFFAALTAVVLSFMF
                     PTTLELTASPDGLTPPQGIGEILKTVIFNLVDNPLVALSNANFIGILAWSIGLGIAFR
                     HGSASSKAFLNDLANAVSFVVKVVIAFAPIGVFGLVAETVAINGIDAFEDYARLLVVL
                     VGAMLFVALVLNPLLVYWKIRRNPYPLTFTCLRESGVTAFFTRSSAANIPVNMNLAKR
                     LGVRDEIASVAIPLGASINMAGAAITVTVLTLAAAYTQGIQPDFATALLLSVVASICA
                     CGASGVAGGSLLLIPLACSLFNIPNDIAAQVIGVGFVIGVIQDSVETALNSSTDVLFT
                     AAVSYAEDQKSA"
BASE COUNT         4374 a         3990 c         3393 g         5219 t
ORIGIN      
        1 tttaattctt ttgccgctaa tgataatcgg cgatgttccc agccatacat atgacctata
       61 tcaataggct gttcaatttc ttgacgggtt aatttattgc gataattacc atttggcaat
      121 ttttcataat tagcataaat tttctgtaac gtttccgagc gtaaataagc tcggttatat
      181 agcccatcta ccggattatc tgtcgataaa tagcgtcccg tttcggcatc aatttgctga
      241 gacaaacggt taaaatgtgg atctaccccg gcttgatggt ttggcgtttc aaaacgattg
      301 agatcttttt gaactactgt caccactttc ccgtctttcg ggtctgtgaa ctgataagct
      361 ttatagccat caatattttt tacctgtttg gcatcattcg gtaaagcgtg ccaacaatca
      421 ttatgcaccc ataccccttc attatcggca tttgtacctc taataaagta agtatgatct
      481 ttctctaccg tcatattgta ggcttttaat ctttcctgtt tgatttttac cttagtgaca
      541 gtctgccact caccactttc agcaagtaag cgatagcctt tttgcaaatg ttgagcatca
      601 acccactgag cttttgctat ctctccgttg taagaatgcc cctccgaaga aatcggcact
      661 ctgcccgata atacttgcgt aaagaacggg tggattttgt ttgacacaat ggtgtggtat
      721 tttcctttgc tgtctgcgac ttctacatac accgtataat cgtatggatt actgtaatga
      781 gcttggactt tctgataggt ggttataccg gtgcgttcat ttttcgccag caccttatcg
      841 cccactttaa tgctggaaat ctgtcgataa cctttatcag ttttgacttc catatcaccg
      901 tggaatgagc aagtgcctaa actagcgctc gatctggtct taggaatcgc aagttcttta
      961 cctgatttgg tgactatttt cgccgttgtc cctacacctg ttttaacaag agcaccagca
     1021 ccggttaatg ctgtcaccac atcagtcatc atattgccaa actcttttcc ggcattaaaa
     1081 gaacctacag cccctgcctg ttcatagtaa acctgcattt tatcgagttt agctaaatac
     1141 tcctgtttag tcatattagc aatataggag agcgtatctt ctcttgcgat caattctttc
     1201 atcgccacaa tagtttctat tgggcttgag aacatggaga tcaatccttc aacgctctca
     1261 gcgagattct caggaacacc agcaacggcg cctgatacaa aactaacatc ttgcccaata
     1321 tcaactaatc cccaatataa tcgaacttgg ttttcacagc gggcatcacc atggcaggat
     1381 tttaattctt gtgagcgttt ctgctcctgc cagttcgaga ggtagttatt ctccactgcc
     1441 cttttcccaa tatccgcccc aaccgctgcc gattgtgtac tatcccctat caaacctgaa
     1501 gccagtccgc ttgcaagctg gcttagcaac gccacattct gtttctcggc ttcggttaag
     1561 tcttgcgtgg atttgccctt gtagagggtt ttaactataa agtccgctgc cgcttcgctc
     1621 cctgcgcctg cagcagcccc tgccagtaca ttgttccctg tcgcagccgc ttccaccgca
     1681 cccagtaagg cgtgggcaat caggttggct tgggtatccc cttcggtgta ctttttgatt
     1741 tctgcattta agtatggtga ggctaaaccc actgccgctt gtcccacgtc tttcgccgct
     1801 aaaccttgca aggctgccgt caccgcttcc accgctcgtt tggttttact gcccgtgccg
     1861 tagtttttat caaactcttt ttgcaagcgg tctaaattgg cttctaattt accaatctct
     1921 tccttgctcg ctttttgagc ttgtgctttg cccaattcca gcttcgcttc cgtcactttt
     1981 tcacgctcac tatgcgtgta aatctgataa gccttttctg caatctcgcc tatgcctttc
     2041 accagctctt gtgtttcttt cacctcactg atatcgtatt tcgtcacttt ttgattggcg
     2101 ttttgcgtat ctcggttgag atgattaagc gtagtttccg catttaggtc ttcggtgagg
     2161 gtgatagcga tattttctcc aatcgctgcc tttgttgtgc ttcgctcgct ttcgttttta
     2221 ttgcccagta agctcagtgc cgacatcggg ttcaccccac ttgtccctcc gctaatcgcg
     2281 acacttcggg ttttcaattc actgtggttt tcaatatcgc cggtggtcag cgtgccggct
     2341 tggaagcggt tgttttcttt ctccgcttgg ctagtcatta ccgctccctc aaaatgggcg
     2401 ttctttttca ctttaacgtc cattccactc ttgcctatgt cgattgcagt ttggttttcc
     2461 acctgagcag tgttcaactt cgctccatta tatgccacat gaccatttac tcctgttgtc
     2521 cctaccgcca atgtgccatg tacgctgcct tctgtgtatt cgcttttata tttgcttata
     2581 tcttgtcgac ttcttgcctc aaaatcttgt acctcacctt cccaatgatt tgctttgaca
     2641 ttggttgcat ccagcatgag tttaccattt gcagaatttg taacaatttt acccgcttgc
     2701 agttggttgt tctgccacgt ttcagtttcg atattctcct tgcctttacc tccactcact
     2761 cctgcctcaa aaccaatacc aaaactatct ctatctaaac cgataaatac gcccacactc
     2821 gcactgtgat tcttattctt agtgttgttt tgataagtat ccgcaacacc tttggattca
     2881 atacccagct taccgtcaag cagcagggtg tctttcactc gggtatccac cccttccagc
     2941 gcaactttgc ccgctcccga aatcaaggca atattgccgc cgttcagggt gcttttgctg
     3001 tgggtcacgc tttgactacg gctttctctt tgctgttttt gcgtgccgag actgactgaa
     3061 atcttcaccg ccggattttc tgccgcagca tggttttctg tgagtgcatt gccaagattg
     3121 cccagcgttt ctgccacttt ctgagcattt tgtgctgcaa tcacggcatc ctccgccgct
     3181 tttaccgcat ataccccttt gagtttctcg ttttgtgttg ccttcgcttt ttgcaccgat
     3241 tgccgtgccg attgcaccgc atccgttacc ggtgtactca acgcaatgct taagcccgac
     3301 tggctaaatt cataattatc ggtgctgtta ataacatctt tccctgattc aacccgtacc
     3361 ccgtttttgc ctgaaatcac ggcggttttt tcgttggaaa tcagcacatc gacattgctc
     3421 acgctcgctt tattgccggc ttgaatccga atattgcccc cttcactgcc caatgtattg
     3481 cgtgccgtgc tttggattgc cccctctaag ctgttctctt ggcgtgtttt ttggctaccg
     3541 atagtaaagc cgatttcacc accgttcaag aaaccgctgc gttttgtctc acgaatatgc
     3601 tgttctgaaa gttggtttgt tgccgaactg agcgttacat tattaccgcc gataatatca
     3661 atatcgccac tgcgtgagac ggcaagaaga ctttcacctt gaatatcgtg accggctttc
     3721 actaaaatgt cttcaccggt tagttcagtg cctttgtgtt cggtttcaga aatattgtca
     3781 taagtcgttt ttgttttctt cgctagcgca ccaccacttt ttgttttgtg atactcttca
     3841 taatcgcgag aacgtgttgc gctacccaac accatatcat tttcagccag taacgctaaa
     3901 cgcgctttgg catccaaatc cgctccttca ctgtaaaggt ttttccctga aaccaccaca
     3961 tcgcctttgc cttgcacccg tgaaatgacc acatcattca aggcttcatt acgatagtga
     4021 ttgccaccgc ccattttttc atcaaaacca acctgtaaag cggtcaaatt caactgattt
     4081 tttgcagata agtaggtctg cccctgtccg tcattgatga tgtctgcgcc tgctgaggtg
     4141 atgttgcctg cctgtacttg cagcagtcca ttttcatctt taacgtgcag tagggctttg
     4201 cggtcaaggt tggtttcagc gcgtttgaaa ccgtctaggt caatctgtgt ggttcgagtg
     4261 gtggaggtat ggttaaaatt gcccgcaata tccagcaaaa tcgctttatc cgcttcaatc
     4321 ttgccgccga tattctctag atcaccgctc actttggcag caagcacgcc accactgagt
     4381 gtgccactat tctctaaccg ttcggcatta aactgtgcta aacggcggcc tgctatcgtg
     4441 ccttggttta caatctcttt actgttgatg gtaagcgcat cggctgaaat caggctgcct
     4501 ttgccgtcaa tatcaccttt gcgtgcaagg acatacactt tcggcactaa taccgatacc
     4561 gtttcaccgc ttggcaagcg aaccgtttgg gtttcaaacc aaacaatatc gctggtcaag
     4621 cttgccactt gctccggcga taaggtaatg cctaaccgaa gattgaattt ctgcgcaaag
     4681 gtgatgccgg catccatcag ggctttatat tggctatcaa aatccgtata gtcgcccaaa
     4741 aattgtctgc cggttaagcg gttgatttgc tctcgaatta agcgctgttc ataaaaacca
     4801 tcgcccaaac gtttatgcac attgttatgg tcgtggcgta gggcattgaa catataatca
     4861 ctgcttaacc agcgtttttt atcggtgaaa tccggatcgg tttcgatcag aacatggcta
     4921 tccgcttgag ggttaatgcg ataaagccct tggtttggca aacgggtatc gaccgtcatt
     4981 gagcgaacct caaatgcggc tgcattcggg cttggtatgc gttcaatcgc cattgttggc
     5041 ggattagggg catcgggtag attaccccgt tcaacctgat tgccttccgg cttcacggca
     5101 tttgctgctt tagcgtccac ataatctgta taagcggtcg gtgaagtatt ttccagctcg
     5161 acaaaaatat tcatatcctt atggacttct tttaaacgag cgagaggacc atcattttca
     5221 tcgtagcggg agtggcgacg tcttgtgcct ccgtggtact cagtaaaaga gaattggcgc
     5281 cttcccagtt cccaatcttg gcgaacagca tctgcatcat caaggttggc aattctactg
     5341 cgaccaatcg ggtttaacgc tttgcctgca ataacccaac ttttatcgtt gataaattca
     5401 tcgctttgat aagtgagatc gccacctgcc aagatctgtg ccggtaagct ggctttggtg
     5461 atattctctt ttaccatacg ctctttaatc cacaaattcc agaaatgcgg gtattcttgg
     5521 cttaaattcg ctttattgtg ctttgcaatc gcttcatcta atgcttgaat attggcacca
     5581 tattttgctt cccaatcaat taacggtttt aatagcacat aacgctgata agccgcttct
     5641 gccgcttcat aggctttcag ttccgcttga tatgtttgta gtcgtttttg gtattgggct
     5701 tccgtttccg tagagcctct aacaggttca atcggtcttg ccggaaccac cggtgcaatg
     5761 ccttgccctt gttccttctg taatttttcc tgctctgcct cacttaaatg ctgattcgct
     5821 aaatcttctt cattcattgc ttgaataatt tcaggcgtca tttccggtgc atcttcagct
     5881 ggtggtgtta aattaaacca cgtccatact gggttatctt ttttataatt acctgcaggt
     5941 aatagagtac aatctacact ttcatcattc gcacagcttt gagcataggg ttttgccaat
     6001 acggtcgtgg cattcagctg gctaatatcg gtaattaccg gcaagtttgc ttcatcatac
     6061 ttttgccaat agctccacgt tttgcgatag tagcctttgc ggagttgatt cacattaatt
     6121 gtcggcaaat gcccgttatc atatacatca cttccacctc gattatgctt atctcttggc
     6181 aaaataaaat gttcgttcac agtttggcga tcagtggtct ccaattccga acgataatga
     6241 ctatttacat tcgctacctt atccgcattc aactgaatac gcccttcagc ttcaataata
     6301 ctgctgcggt tatgtagctg ccctgcgttg ccaataacgg tatcttgctc atttaattga
     6361 cgtccaatcg ctatctctcc tccgctatat attaatgaac cgcttttctt attcgcttca
     6421 taaactaggg tattattttc aattacttta gccgctaaac cgagagattg acgagcagca
     6481 atagtggcag aggtcccgtc tttatcttga tttagtatcc tctccgcacc taacgccacc
     6541 ttatcgccat aaatattccc tgtgccgata ttgtggattt cttgagcttt aatcacagtt
     6601 tgagcgttat cgttgtccga gcggctattg attaagcctt cgttatagac ggttgaagtt
     6661 gcagtcaaac gggtatctgc cgagcttatt cgggcatttt gtgcattggt tatttggttt
     6721 gccgtgagct gcaagcggtc atttgcggct aattttttgc gattgagaat atcgccctca
     6781 gtctgaataa tcatcgacct attcgcattg atatctttgg taatatcaaa gttctcttgc
     6841 aaattcaggc gaatatcgcc tgcttgtaca tcaccatcac cggataacgc tttggcagtg
     6901 atctccaaac cattatttgc agaaactttt ccctcggtat tcgtcattgt gagtgatttt
     6961 ccgccgaaaa tagccagatc gccccaactt aaaatttccc cattacggtt atttaagctg
     7021 tcgctgaggg taaatcgtgc tgatgagccg atataaatac cgcctttttc attattgagc
     7081 tgttttgtgc tgttcagtac aaactgcgat gcaataatcc cctgtattgg ctgaggttgg
     7141 cgtgccaagg taccttgatt ttccacctcg aaactgttca tcgtaagtga gccacctgct
     7201 tcaataagtg agccattttc cgagatccga ttatttaaga cagtcggtac attgagcgtg
     7261 atatctgtgg ccgatttcag taccccacct tggttatcca aaagcgtgct atttagggtg
     7321 agatttccca cactttgaat aacaccgtgc cgattatcta cttgttggga aaccgtgagc
     7381 gctaactctt ttactgaact aatttctccc tgctcacggt tatctaagga ttgagcgtta
     7441 atcgcaacac cgctggcgga aattcgcccg ccttgatttt gcagttcgct agttatatca
     7501 agggtttgct ccgtttgaga ggtgatcacc cccgattgat tttttaacgt attgaccgta
     7561 atcgcctgtt tttcgccact caaaatcaga ccttgctgat tattcagcaa tggagcacga
     7621 atagataact cgccttttgc aaccaatttg ccatcgactg aatccacagc atcatttaaa
     7681 tttagcccta aacgcttgcc actacttaat agcccttggt tatttgttaa acgattaccg
     7741 tcaatctcaa aatgtccacc cactgaaaag cgagccgagt cagtatggat actctctgct
     7801 tttaggcgaa aatcctgctc accagtctgc ttccaaaccg agccacgagc atttaaattc
     7861 gcttgttggg cctcaatcac ctctgcggtt agctggcttc cttcagtgga aagccatttt
     7921 ggggtggtga gcttgatctg atttgcacta aactgcgcac tattcgcctg aatatcgccc
     7981 gattttgcac tgtattcaac ggtatgggca ttattttggc tctgattggc atcaatctca
     8041 gctgccgcca cgttaatttt ccccgaagcg atattttttc cctgcacagt ggttttttct
     8101 ggggcagtga gttgaatagt tttccctgcc acagattgag cttccagctt ccgtacttca
     8161 ccttgtgcag tgtcggttac gtccacccca gcggcaatca gtgagttttt gtcggcgtga
     8221 atttggcggg cggtgtaggt gatattgcct tttgcgaccg tttcgccact ttgctggatt
     8281 ttagtttcgg cttttttctg aatattgcca cccctcgcca cgatggaacc gctattttga
     8341 atatcggctt tcgagttaag ctgaatattg ccctgtttat tttcaatttt gccttggttg
     8401 tcaatcccgt gttgggcatt gagttgcact tgtctttgag cgttgaacgt gccgctgttt
     8461 acaatccgcc cttgactgtc aatggtgagc gtatcggcac ttgcaccgat atgcccagcg
     8521 ttacgcacgc ccacgccctg ttccgtacca atcaggtgga ttttgccggc atacattccg
     8581 cccagctcac ccacatcaat cgcaactgtg ggcttttctt cccctgcaag cggttgattt
     8641 gtatgaataa tttgcaaatt gttgtccgaa tttgaccgct tgacggtgtt tttgccggta
     8701 atgactttag tctctttttt cgaccagaca ccggcgttga ttttcgcttc tcgggcgagg
     8761 atatcggtgt aatccactcg gctgttgtcc agccctttgc cagcaaccgt taccttgcct
     8821 ttttccacta caaaaccttc taaattgcct tgatttatct gtggttttcc ggtggtcagc
     8881 gtggctcggt cggcgttgat aataccgcag ccgtcacagt gcaagccgct cgggttggcg
     8941 ataatcactt ccgctttttt gccagccact tccacataac ctttcattac cgaaggctta
     9001 ctggaattga cttcatttaa aatcaccttc gcttcgccac gggcaagata cgggttgcct
     9061 tgcaccatac cggcttgttg ggtggcggtg ttggtgcggc tgttgttgag aattgccccc
     9121 ttctccgcta cgtcaaattg gctgtattta ttgtgggaaa gccctttatc gttcggggtt
     9181 tgaatattga tttgtggcag cccgttggcg gtttgcaaaa taatcggttg ctgatttttc
     9241 ggggcagtgc tatcggcttg aataatcaaa gtttccgcca tagcgttgtc tgataaggta
     9301 acgaatccca acgcacagaa caagctgaac gcaagcggtc gaattttgca aattttttgt
     9361 aaaattgcac cgcttgtcat actttcactt tctgatttac ctgctaattt tgctaattca
     9421 gataccacca caatacgttg taaggtcttg ctgaaaatag tgcgaaaaca atgcttattc
     9481 ataataattc cttaatagca caatatactt aatacaatat gcccaatcat tcattaaaaa
     9541 ttgtaaccaa tattaaaacc ggcaacggtg tctgaggttt taaacccttc cggttttcgc
     9601 atcggtctac cggcaaacac gtcataacta aatcctttaa ctccaccccg aaacccaatg
     9661 gctgttccca ttaaatgatg tccgagctga ttttccgttg cccaaccgga cactcgacca
     9721 ccatctaccg cccaataaaa agcgtggttc ggattaaatt gccagctcaa ctcattacgc
     9781 cagttccagc cccgctcacc ggaaagagtc agttcaccgt caaatccacg tatggtgtaa
     9841 cgcccgccaa tcgaaaaacg gtcttgcgga accagagggg ttttattcca ttgggcattt
     9901 aggctacttt gccactgcca tggctgcttg ccccaaaaaa acggtttcgt caggcttgca
     9961 cttgccgtga tgattttagg gcgagaagtc ccttcgccat aatcttcctc gggagcagat
    10021 aatgcccctc gtgctgccgt acctcgtttg aaattagccg aaagctcaag cgtagcggtc
    10081 gggaaatatt ctttatgcga aaaacccgct tcccaacctg ccattcggcg tttttgtact
    10141 tcaatttctg agccgtcaat atagttttgc gactggcgtg gccaaagtga accggacaag
    10201 ctcgttttac gtttggcatc acgataaagc aaataagaaa aggttaattt atcggtatca
    10261 ctttcaccgg cgtagagata gctcttgtca aaggcaccaa atacttcttg atgataacga
    10321 tgatgagtgt gtgaaaatgc taactgccaa tagccaaacg gcacggaata gtaaagcgtg
    10381 agatttttac tggcacgtct gccgttatca tcaccttttt gtttcatcga atgggtaaaa
    10441 gaggtataga acaggtcatt tgccgaaaaa atattatcta tagacagagt ggcggaggtt
    10501 tgtaatttgc ctgtggattt cgagccggca tcgtccagcc caagatttaa gcgaaatgga
    10561 aacgcttgcg aatagctgat ttttaaatca ctgtctccca cctccgcttt ttcgcttgag
    10621 ctgggtaaaa tctcaatatt tgcctccgcc gtcggcaccc gttttagatt ttccagagac
    10681 tgctcaatat ctcgcacatt cagaatatcg ccttcggcaa aagtaaaacc ggttaaggcg
    10741 tgcagcttgg taaaacgcgg tactttgccg ctatctacca ctaaagtatt gcgtattttg
    10801 cccggaatca cggttaaaac taattttccg ccacgtaaat cttgctccgc agtaaccact
    10861 cgtgtagtga cataaccttt gccaataatt tcattttgga tttgcttcat caacacagct
    10921 aacccttcac caccaaagca gtgaggtaat gtcaaatgaa atgattttac tgctttttca
    10981 aacgcccatt ggaattggct ggtagtcaga gaattgtcag gagaatagtc aatgagagtg
    11041 atttgatgaa tggggtaaca aggcaattcg tgattggaaa gagtaagtgt atcattgatt
    11101 tgtgtctcga gccgtacatc agctttcggc tggaattttt ctgcttgatt ttgttggtat
    11161 tgctgttggc gatgttgctg ggcagcatca atttgttgtt gagttgcatc aatgcgtgct
    11221 tgttgtacaa ggcttgaaga atttgcttca gcaacaaaag aagcacttaa caataccgtg
    11281 cttaaaatca gattttgtgg ggttttcata agatcaaata agtaagacat tcaacgtttt
    11341 tagtctataa aaatttatgt tgttttgcaa actccgtttt atggagcttt atacatatct
    11401 gacgactttg gttttttatg ctattatctc cgccattttt atactataga gaatagaata
    11461 accgtgttag tttcagattt tcatttcaac ttacccgatg agctgattgc tcgctacccg
    11521 actgccgaac gctctgccag ccgtttatta cacttaaatg gcgaaacagg cgaatttgcc
    11581 gatcaacaat ttgtggattt atacgatcat atcaacgaag gcgatctatt gatcttcaat
    11641 aacactcgag tgatcccggc tcgcctttac ggtcgaaaac ctagtggcgg caaagtagag
    11701 gcattagtgg aacgggtgct agatgaacac cgctgcttgg ctcacgttaa agcctcaaaa
    11761 gcaccgaaag aaggggctga attgatcttt ggggaagata agctaggtga aggcaaaggc
    11821 tttacggcga caatggtagc tcgccacgat actctgtttg aattggtgtt taacgaagag
    11881 caaccgttat tcgaattgct acagcaagct ggtcatatgc ctcttccacc ttatatcgac
    11941 cgccccgatg aagatgctga ccaagagcgt tatcaaaccg tttatagcaa agtgttaggt
    12001 gcagttgccg cccctaccgc cggtttgcat tttgacaatg caatgcttga aaaactaaaa
    12061 gcaaaagggg tggatactgc cttcgtaaca ttgcacgttg gtgccggcac tttccagccg
    12121 gtacgggtag aaaccattga agatcataaa atgcacgccg aatatgccga agtgagccaa
    12181 gaagtagtcg ataaaattct cgcaacgaaa gccaaaggaa aaagagtgat tgcaattggt
    12241 acgacatcag tacgttcggt tgaaagtgcc gcccaagcgg ctgaaaaaga tgggaaattg
    12301 attgctccgt tcttttctga caccgctatt ttcctttacc cgggaaaaac ctttaaagtc
    12361 attgatgcgt tagtcaccaa tttccattta ccggaatcca cgctaattat gttagtctca
    12421 gcatttgccg gctatagaaa tacgatgaat gcctacgccc acgcagtaga aactaaatac
    12481 cgttttttca gctatggcga tgcgatgttt atcaataaaa acccaaatgc gttgagtgat
    12541 gttccttaat ttatgagggt tataagggaa taacattatg aacaaaaaca atcttccaac
    12601 cattttaagg gattgttttc aatatattca ataatttgga agtacgatgt ttcattacga
    12661 ataatgtgtt cataataatt cctttgccaa atttcagaaa tatcggtatt ttgacgaacc
    12721 catttagtta cgccaatttt aaaaccacgc acaatagagc cgattgttcg tgatgttccc
    12781 cgtaagggcg aaacattttt cgcccttata catggggcaa atgatgattt gcccctacag
    12841 tttcgacgat ttcaataatg ccatgtaaat gattaggcat aatcacaaag ctatgcaagc
    12901 ttacatttgg aaaatgatcg ggtatatctt cccaacattg acgtacaata ttccctatct
    12961 tattaagcct catttcatca tcaacaatct caccgagaaa atggtgttta tttttacaac
    13021 aaatagtaat gaaatagaat ccttgtgatc ggtaatcata atgctttaga cgaattgaac
    13081 gcctcctatg aatctccggc tgatatttct gcatttttct tattccttaa taaaactgct
    13141 tataccaagg ggaaaatgcc ccccttgcct gctcaatttc aatagaactt gggtaaaatt
    13201 ttactcttat cattcccgtt tctacggtat ttaatacatt aatatgtctt ctgtttaatc
    13261 tctcaataat ctgtttattc ggtaatttcc atgggttcca tcttccagca gaaatcactg
    13321 caaatgctgg ctgggtaatc gataataaag tttcgccagt gctgcttttg ctaccgtgat
    13381 gtccaacctg tagaaaatca attttgccga gctgatgggc aaattggcgt tcttgttcca
    13441 cgccagaatc ccctgtcagt aatatcttca agcggtcgtt tttggctaaa ataacgcaag
    13501 agtcttggtt tttagctcgt tctgcaatgt gtgacgggta aattgccaat aattgccatt
    13561 cgccaaattg ccacgatgtt ccggcaatac aaggctcggg atttatattg tgatacgtca
    13621 ccttgcttga actaattaac cttgcttttg ggtatgcttg caataactcc actaccccac
    13681 ctgaatgatc attatcatcg tgacttagaa aaatcgcctc tacctcaatg ccatttcgct
    13741 ttaaatacgg caagatttcc atttttgcca ttgaattgcg actaccatca tttgcttgcc
    13801 aactggagcc ggtatcgtaa attaccgctt tattttgttg ataaatgaac gccattgcca
    13861 gcccttgccc aacatcaaac ataatccatt ctgtttgggt ttgattaaag agcttaggga
    13921 gataaaaact cagattgaac aatagggata ccgctactgc acttaaccac tttttataag
    13981 atagccgata taatttgcaa tacagcaata ctaaaaccaa taaattcagt gaaagtaact
    14041 gccactgttg ccaatggctt aatgcaaacc acgcattaga aaatggatct aacagccata
    14101 ggctaaattg agcaagatag tccgccaaca gccacgttga aaacagattg tcggtcaaga
    14161 gcgtaaataa aataagcggt acaagcaaaa agctatacaa cggcacaata atcaggttgg
    14221 caagcagtgc aaaagcagag atgccctcaa aaaagtagag ttgaaccggt gagaaaatca
    14281 gccaaatgcc gatttgtaag tgcaaaagcg ataaccacaa gcggttaaat tttgtgattt
    14341 ttttacgata ttcatcgttt aaaaatcggc taagaggaaa atattgatac cataaaatta
    14401 aacttgctac cgctaaaatt gagagccaaa aactatcaga aagcaggctc aatgggtcaa
    14461 ttaaaatcag taacgccact attctccccc aatattgcca aggggtatag tgtcgccgca
    14521 gaacttggca aagcaagaca aacgcaatcg ccagcaacgc tctggcggtc ggcacggcaa
    14581 aaccggctaa atagctgtaa ccaaatgcgg tgatgaagct aactattctt gcaaaataaa
    14641 gtgaaaatcc gaccgcttgt aatgcggtaa gctcgctttt caagcaaagc cattgcacgc
    14701 ctttggcaaa gtaaacacca aacaacattg ccagcccgat atgcaagcct gaaatggcaa
    14761 ttagatgggc agtagcggtt tgttggaatt gcccccagtg ttctgttttc agccacgccc
    14821 tttcaccaaa agccagagcc aataaaaagc cttgcgtagg caaagcgtcc gtttcagctt
    14881 tcactttatt cagccaattt gttcgcaagc tataatcagt tttggctaat gtttccacct
    14941 tgcgaaccgt tgctgtcata ttgatatgat tggcaaaata ccaacgctgt cggtcaaaat
    15001 taccgatatt gctacgagct gaaataggac gaagagccag ttcggcttga tagaattgat
    15061 taagtaacaa cggctgtttc gattgccagt tcaagtagat cttctcgcct gtatttagtg
    15121 tcgcaatcgc tgtttgataa tcggtttgtt ttaagatttt actgatttca aattgaacag
    15181 gcgttttact agcagtcgtt ttttccgcat tttttgcaac ttgaatgatc tgaatatagc
    15241 caatacaaac caataagccg agtacagccg ttaattttga gcgtagataa acactcaata
    15301 tcagcactaa ggttcctatt actataccca caaatagaaa cgctttaggc aaccataaaa
    15361 taggcagatg aaatagaatc agggcaatac aaaaacggtc taaagtcata attcggctta
    15421 ctttttaaag ctgagtatgc cgtttgtgct taatattttc agaataaatt ttcagatttt
    15481 cgacacagtt cgcaaaaata cttgaaaaaa taaaggcaga ctttttagcc tgccttataa
    15541 agaagagata ttatgctgat ttttgatctt cagcgtaact tactgctgca gtgaataata
    15601 cgtctgttga tgaatttaat gcggtttcaa ccgagtcttg aatcacacca atcacaaaac
    15661 ccaccccaat tacttgagca gcaatatcgt ttggaatatt aaataaacta caggctaatg
    15721 gaatcaataa taatgaaccg cctgccacac ctgatgcgcc acaagcacag attgatgcaa
    15781 ctacgcttaa tagtagtgct gttgcgaaat caggttgaat accttgtgta taagctgccg
    15841 ctagggttaa tacggttaca gtaatcgctg cacctgccat attaatactt gcacctaatg
    15901 gaatagctac agaagcgatc tcatcacgaa cgcccaaacg cttggctaaa ttcatattca
    15961 ccggaatgtt ggctgctgaa ctgcgggtaa agaatgccgt tacaccactc tctcgtaaac
    16021 aggtaaatgt aagtgggtat gggttgcggc gaattttcca atacactaat aatggattta
    16081 gtactaatgc cacaaataac attgcgccaa ctaagactac taataaacgt gcgtaatctt
    16141 caaacgcatc aataccattg atggcaacag tttcagctac taaaccaaat accccaatag
    16201 gcgcaaatgc aatcacaact ttcacaacaa acgaaactgc gttagctaaa tcatttaaga
    16261 atgcttttga acttgccgaa ccatggcgga atgcaatccc taaaccgata gaccacgcaa
    16321 gaataccgat aaagtttgca ttacttaatg cgactaatgg attatcaact aagttaaaaa
    16381 taacggtttt tagaatttca ccaatgcctt gtggcggggt taaaccgtct gggcttgcag
    16441 taagctctaa tgtagttggg aacataaagc ttaaaacaac agccgttaat gccgcaaaaa
    16501 atgtacctaa tacataaagc accagaatcg gctttaattt gctatctgaa ccaacttctt
    16561 tatttgcaat cgcagccaaa actaatacaa atactaaaat aggcgcaatg gcacgtagtg
    16621 atttcacaaa aaattgacct aatacaccaa cgctggtagc ccattcttta ttaataaatg
    16681 ccagcaatac ccctagcact aaaccaatgg cgatacgtaa tactaaatta ccgccaagaa
    16741 tttttgatga taatgattga ctcataaccc ttcacttctg taagacaaca aaaaataagg
    16801 ataaataaaa tttatccgcc tgaaaaaata ggtttataag attagcggaa aataaacaaa
    16861 tatggaataa acaagcggtt tatttttcag atttttttac aaaaaagtga agttttttac
    16921 attccatggc tatcatatta ttttttcctt aggttctttg aacatcacca ttcttt
//
LOCUS       DANMBQ010000042        16884 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.042, whole genome shotgun sequence.
ACCESSION   DANMBQ010000042 DANMBQ010000000
VERSION     DANMBQ010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16884
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.042"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..227)
                     /locus_tag="PXE92_001181"
     CDS             complement(<1..227)
                     /locus_tag="PXE92_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760437.1"
                     /translation="MKNVHTKYDHKAVKHGFAIAIQNSVNYLYEIAERQPPCNFELCW
                     KNCAAHYLAIKSAESNNERDLNLFLDYINEP"
     gene            complement(521..2710)
                     /gene="yccS"
                     /locus_tag="PXE92_001182"
     CDS             complement(521..2710)
                     /gene="yccS"
                     /locus_tag="PXE92_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HDL5760438.1"
                     /translation="MNKFLRYLQHSWLSENVIKTLPMFISLNIAAVSIWQLGISDFAM
                     PLMLGIIAGGLVDLDNSLIGRAKNLIISLVAFSLSSIGASVSLHLGWLFVPVAVVCTF
                     LLVMLGAIGQRYSTIAFGTLIVAVYNSLAYTPEVLWYHNVVMILLGTLLYGLVGILVY
                     LIFPNRTVQENLASAYLALSHYLLAKSAYFDPDDDDLAAKQLALAKANSEVMAAFDKT
                     RVALFYRLSRQHKQQRTQRMLRYYFTAQDILERASSSHYQYHELFQQLSNSDLMFRFQ
                     RVLELQAAACQKIAMSLRHREVYEHGVRGEKALQGLLNSLNYHQERGLKSAYRWRAIA
                     ENLGNIERQLAQIEQGSSSGEHIEPLSKNFTKSHRLIAENITGLSNISQAIKAHLTFE
                     SQLFRHAVRLSIVVLLCSAIVPILGFDSKGYWILLTAIFVCQPNYTATKTRLIQRVIG
                     TIFGVLVGGSFELFNVALSLEAQLGLIVLTGSLYTFFRLVHYGFSTFYITVLVMISLD
                     IAGVSLESGILMRMLDTLLGTAIAWLAVAFLWPDWKYLNLQRNLHNGLKASGQYLRHI
                     IAQLQFGYNEQLPYRIARRDVHNHLSALSNAITNMYSEPQKYANDLTFAPKLLGIAYT
                     LLGYISTLGAYRIASREINQQVDFSAMFFSHAREVANIIGQIASESRSFAKLSEKLTA
                     IDQDLTQFEQENQQKQNDLALVLIQQLRLIVQLLPQLNSILQLKSVR"
     gene            complement(2754..3212)
                     /locus_tag="PXE92_001183"
     CDS             complement(2754..3212)
                     /locus_tag="PXE92_001183"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HDL5760439.1"
                     /translation="MKTTVRTIAKQKQIALVAHDSCKQDLIRWTQTHQAQLASHKLYA
                     TGTTGHLLARETGLEITSLLSGPMGGDQQLGGLIAEKKIDLLVFFWDPMNAAPHDPDV
                     KALMRIATVWNIPVAINETTANFLLNADLFNQAISVNVPDYDGYLAERLG"
     gene            3338..4612
                     /gene="thrC"
                     /locus_tag="PXE92_001184"
     CDS             3338..4612
                     /gene="thrC"
                     /locus_tag="PXE92_001184"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDL5760440.1"
                     /translation="MNLYNIKHPEEQVNFAQAVRQGLGKNQGLFFPEVLPKLDSIDEL
                     LDLPLVKRSQKILSALIGEELPQETLNAMVKNAFTFPAPLAKVNDDIYALELFHGPTL
                     AFKDFGGRFMAQALANVRGDGKITILTATSGDTGAAVAHAFYGLENINVVILYPKGKI
                     SPLQEKLFCTLGGNIRTVAIESDFDACQALVKQAFDDAELRQAIGLNSANSINISRLL
                     AQICYYFEAVAQLPKEKRDNVVVSVPSGNFGNLTAGLIAKTLGLPIKRFIASTNANDT
                     VPRYLQSGKWEPNATVATLSNAMDVSRPNNWPRVEELFKRNGWSLSELGSAALNDAET
                     EAALKAQYAEGYLCEPHGAIAYQSLKDQLQQGETGIFLCTAHPAKFKESVEHILAIEL
                     PLPEALDKHNKLPLLSDEMAADFATLRAYLLK"
     gene            complement(4691..5425)
                     /locus_tag="PXE92_001185"
     CDS             complement(4691..5425)
                     /locus_tag="PXE92_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HDL5760441.1"
                     /translation="MSFKDMTGQKVPSVTFRTRQNDAWVDVTTDELFNNKTVVVFSLP
                     GAFTPTCSSTHLPRYNELACEFKALGVDDIICMSVNDTFVMNAWKADQESENITVIPD
                     GNGEFTEGMGLLVDKNDLGFGKRSWRYSMLVKNGIVEKMFIEPQEPGDPFKVSDADTM
                     IKYLSPNWTAKESVSIITKPGCLFCAKAKALLKEQGYTFEEIVLGRDASTISVRAITG
                     KTSVPQVFIGGKYIGGSDELAAYFAK"
     gene            5540..6424
                     /gene="oxyR"
                     /locus_tag="PXE92_001186"
     CDS             5540..6424
                     /gene="oxyR"
                     /locus_tag="PXE92_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HDL5760442.1"
                     /translation="MNIRDLEYLIALAEHKHFRRAAESCNVSQPTLSGQIRKLEGELG
                     TILLERTSRKVLFTQAGLTLVEQAKVVLREVKILKEMASNQGKEMSGPLHVGVIPTLG
                     PYISPIIVPALKAEFADLELYIYELQTNQLLDQLESGQLDCGIISFVKESESFIEVPI
                     FNEEMYLVVPEQHEWAALKKFDMNLLKNRELLFLDSGHCLRTNTLDYCLSIGAKENPH
                     FKATNLETLRNMVAANVGLALIPKLAAKPIKGVHYIPLENPKPFRAVGMVYRPGSPLR
                     ARYERLAQAITKIMQSEA"
     gene            6427..7059
                     /gene="fabR"
                     /locus_tag="PXE92_001187"
     CDS             6427..7059
                     /gene="fabR"
                     /locus_tag="PXE92_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HDL5760443.1"
                     /translation="MANGMSVRAIQKEKTRRALVEAAFNQLSSEKNFSNLSLREVARE
                     AGVAPTSFYRHFKDMDELGLAMVDESGLLLRQLMRQARKRIANGGSVVVVSVETFFEL
                     IADRPNVFQLLLRESSGTSQAFRTAASREIQHFVAELADYIMSKDNHSNRELAYIQSE
                     GLVTLVFTAGSHALDMNNQEREKLKQRVIMQLRMLIRGSTYYANKQASST"
     gene            complement(7086..7385)
                     /locus_tag="PXE92_001188"
     CDS             complement(7086..7385)
                     /locus_tag="PXE92_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HDL5760444.1"
                     /translation="MKKADIQKMQDCYNQWVELLPELEKGIEQWKRASALLEPLSRFY
                     ASPEWRELHDSFDEQLDTKGNYSILSEDALWNALSEHHQLALEWLKLSTAYITKE"
     gene            complement(7474..11289)
                     /locus_tag="PXE92_001189"
     CDS             complement(7474..11289)
                     /locus_tag="PXE92_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5760445.1"
                     /translation="MKGSGLATVGAPETGDNGQTIYTVDVAKAGAPTVTRGNVADAIN
                     NSEKTSSVVAGSKAVTVKAGKEDDKGNTEYTVDVATDKSIGRDNDGNMTVNTDNVTIV
                     KDPTTGEVKANTTTLNNSPEGKVTEPTGDDAKKLVTAGDIANAINNSGFNVTAGDGVD
                     GGETKGKKTQLIKPSETVTFDAGKNMTLTQADGKFTYTTKDNVAFNSIDMSNGKPDTT
                     GSITNLKSGVGGTFADKAAPTDAERKAIADNINNATGDTLNNAVNVGDVQAAMKAATT
                     KVEGDKGVTVTSKTNDDGSTTYTVEAKTDGTTIKVNDKGEITANTSELTNNPDGKVEE
                     PTEPNALVTAKTVADAINNAGFNIKANGDEKSLVKTGDTVQFLNGKNIEITRDGNNIT
                     VSTAKNVNFDSVQFGNEGPKITNNGGNINVGDKDGNAVKVTNVAAGDVNADSKDAVNG
                     SQLYTFAMASREEVKSTDKSVTVNTTKNADGANVFDLSVNTDDVTIVKDPTTGAIKAN
                     TTALNDANNDGRIDEPTADDAKKLVTAGDITNAINNSGFTLKTSAVEGGEKLSGGDEL
                     INPGKAVEMVAGKNLTVKQEADGKVIYATKDDVKFSSVTSNTVTVPTDEADPANNPIT
                     INKDGINAGNKAISNVASNLIPVTADDKVQPADNNPTNLADKLSNAATLGDVLNAGWN
                     LQGNGKAVDTVVHNDTVDFINGKGTTVTVENKDGKNTIKVDSPIEFVNQDPTDSSTPS
                     NTAKFTGEAPVQLGNVASSVRNEDGSTPEGKDRAEAIKNAEGDKLNNVVNLGDLQAAT
                     NAATTKVGGNRGVTITPSTNADGSTTYNVEAKTDGTTIKVDNEGNITANTSELGNNED
                     GTVKAPTQPNALLIAQTVADAVNNAGFNIKSAGNKAAGDQAATKLVKTGEEVVFEAGD
                     NLTVKRDGNQFTFATAKDVSFNSVQFSENGPKITNDGDNIKVGDKDGKPTKITNVADG
                     DISPVSTDVINGKQLNNYAKVNGNNIGTDEDGSINIVNGNGTTITSDKAGEVKVNVNI
                     TDLTVADNGKINVQDPNGTGSRFVNATTVANAVNNVSWNVDSKAVGTGAVEGDKAPAK
                     VKAGSTVSVNAGNNIKVTRKGSDVTVAVSDTPEFTSKTGDTLVNNNGVTINNGSAGKA
                     VSLTKDGLNNGGNRITNVKAGEADTDAVNVGQLKGAVNHLNNKIHRNNREARAGIAGS
                     NAAAALPQVYIPGKSMVAAAGGTFKGENALAVGYSRSSDNGKLILKLQGNANSRGDFG
                     GGVGVGYQW"
     gene            complement(11252..11737)
                     /locus_tag="PXE92_001190"
     CDS             complement(11252..11737)
                     /locus_tag="PXE92_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760446.1"
                     /translation="MDTGSITVDNTTGAVTTPAEEDKVATTKTVSEAIQKAGWNAKSG
                     GNKADGDQEAAELINPGEKVIFAAGDNLKVKRVGTIFTYETAKDVKFDSVTFGDNGPK
                     ITNKDGNVNIAGNDGNPTKITGVKAGEADTDAVNVSQLKQAAASQNRSERFRFSNCWC
                     T"
     gene            complement(11746..13905)
                     /locus_tag="PXE92_001191"
     CDS             complement(11746..13905)
                     /locus_tag="PXE92_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5760447.1"
                     /translation="MGARATSANAIALGTDTAATGNRATAFGAGALATGNRSTVMGWR
                     SAASGTRSFAMGSGAMGDKSVANATYSLALGSSANANATSTATRGTAIGYNATVSGVN
                     ATALGVSAVSSNQSTVAIGDSAKASAGFAIALGSGANVALNNSVALGSNSTVSNAVAV
                     PSATVNGITYSGFAANTTAAGNVVSVGSNTIKRQIQNVAAGQISATSTDAINSSQLYM
                     AMNATGNLANSTKNILGGNATVKPDGSVTYTNIGGTNKNTIEEALKAVKTEVVAGSNV
                     NITNATGANGQTIYTVNAYNTTANSSSPDYITVTGKAATAANTTNYEIGLTKKAIDDF
                     TKDTQATVVSNDGTVTVKSTERNANGTVIYDLSVNIPAQASQIQYFSVNSTVPENQAN
                     DGAKSRNSIAIGPNATATGGEQAAVALGTNSNANGNGALSLGVATVSKGIQATAVGHS
                     ANATANGTTALGRQTNATAGDATAVGSNANATAEKASAFGVAANASANASLAVGANSI
                     ASAQSAVAVGTRANATAQFATALGMGAQATLNSSVALGSESVVRAATPTENATVGGIT
                     YNGFAGVNKDTNYVVSVGSAGKERQIQNVAAGQISATSTDAINGSQLYMAMNATSNLA
                     NSTANNFGGGSVVNPDGSVTQPKYNVTNAAGTQYGNTATNVGDAITNLNNYVNQGFNI
                     KDNAGETKGTVTPNESVQFVNGKGTVSNVTQEADGVK"
     gene            complement(14134..14334)
                     /locus_tag="PXE92_001192"
     CDS             complement(14134..14334)
                     /locus_tag="PXE92_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ESPR domain-containing protein"
                     /protein_id="HDL5760448.1"
                     /translation="MNQIFKVIWNQATQSWVAVSELQRAKGKTKSVSSASKATLALLA
                     GASAVLGANDAVAVVSYRFNNK"
     gene            14698..15852
                     /locus_tag="PXE92_001193"
     CDS             14698..15852
                     /locus_tag="PXE92_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDL5760449.1"
                     /translation="MNQFFPLIFSLTLFSGVTLALEKAPRTMPTEGINKPLLGQILFF
                     DNMLSHNGSQNCSSCHNPDYAFIDNRTTPAKGVVSQGDTPTKFGKRNSPTMLYAKYSP
                     EFHFDEQSQEYIGGQFWDGRAKNLAEQAGMPPIDPNEMGMPNKLEVAKRLYNVPMYQR
                     FLGQFYGEKVWESYESVYAAMEDAIATFQQENKLLAPFDSKYDLFLKGEVQLTALEEK
                     GRALFFNKAQTNCSSCHQLQSAANHQEETFSNYHYYNVGVPGNPDLIAVNGFAPDFVD
                     LGLFENPNVKGDETQKGKFKTPTLRNVAVTALYMHNGVFKELKTVLLFLDSYNNPERK
                     INPETGTAWQQAEFEPTIAHQKLKAKPLSDEEIDALEAFLKTLTDERYRK"
     gene            complement(15900..>16884)
                     /locus_tag="PXE92_001194"
     CDS             complement(15900..>16884)
                     /locus_tag="PXE92_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5760450.1"
                     /translation="DLIIYNTEDGKSNVALLVVENEAWLTQNQLAELFDTSVQNISEH
                     IKNILKDKELDENSVIKDYLITAQDGKNYQVKHYSLEMILAIGFRVRSPRAVQFRKWA
                     NSTLRTYLEKGFLIDSERLKNPQGRLDYFDELLEQIREIRASELRFYQKVRELFKLSS
                     DYDKTDKNTQMFFAETQNKLIYAITKHTAAELICQRADATKMNMGLTSWKGKVVRKGD
                     IVIAKNYLDNNELDSLNRLVMIFLESAELRVKNNQDLTLGFWRRNVDMLIEFNGFSVL
                     GNGGTITHKQMESFVREQYEKFDIQRKCLKQKEADWEDLQALEKLESELTR"
BASE COUNT         4828 a         3794 c         3075 g         5187 t
ORIGIN      
        1 ttcggctcat taatataatc aaggaataaa tttaaatccc tttcattatt actttctgca
       61 gattttattg ctaaataatg tgctgcacaa ttcttccagc atagttcaaa attacaagga
      121 ggctgccgtt ctgcaatttc atataaataa ttaacagaat tttggattgc tatagcaaac
      181 ccatgcttca ctgctttatg atcatatttc gtatgtacat ttttcataaa aacctcaatt
      241 tgttaaagaa acctactgtt aagtaggttt cttatttact acaaattaat tatggctaaa
      301 agaccaacct gcgataacag atttaatttt taatagcttt tttgaatcta cttttttcat
      361 aaaaaaatcc tcatatattg attaatagat aggtttgtgc attgcacatc tctatatgtc
      421 cttcaaaaaa aacaaaacat caacaaaaaa ttaacaaaac cataatattt ttattgattt
      481 tgtgaagcat gtcacatttt atgatttaat tataggctca ctaccttaca ctcttgagct
      541 gtaatatact atttaactgc ggtaataact gcacgatcag tctgagttgt tgtatcaaca
      601 ctaaggcgag gtcattttgc ttttgctgat tttcttgctc aaattgggtg aggtcttggt
      661 cgatagcggt caatttttcc gataattttg caaatgaacg gctctctgag gcaatttgcc
      721 cgatgatgtt tgccacctct ctggcgtgtg agaagaacat tgcggaaaaa tccacttgtt
      781 gattaatctc tcggctagca atacggtaag cccctaaggt ggaaatataa cccagcaagg
      841 tgtaagcaat acctaacaat tttggggcga aggttaaatc gttcgcatat ttttgtggtt
      901 cgctgtacat attggtaatc gcattactca gtgccgataa atggttatgc acatcacggc
      961 gggcaatacg gtaaggcagt tgctcgttat aaccaaactg caactgggcg ataatatggc
     1021 gtaaatattg cccactggct ttcaagccgt tatgtaagtt acgttgtaaa tttaaatact
     1081 tccaatccgg ccataagaat gccactgcca gccacgcaat cgctgtacct agtaaggtat
     1141 caagcattcg cattaagatg ccgctttcaa ggctcacgcc tgcaatatca aggcttatca
     1201 ttaccaacac agtgatataa aaggttgaaa agccataatg taccaagcgg aaaaaggtat
     1261 aaagcgaacc ggtcagtacg attagcccaa gctgggcttc gaggctgagc gccacgttaa
     1321 acagttcaaa agagccacca accagcacgc cgaaaattgt gccgatcaca cgctgaatca
     1381 gtcgggtctt agtagcagtg taattcggtt ggcagacaaa aatggctgtg agtaaaatcc
     1441 agtagccttt gctatcaaag cctaaaatcg gcacaatcgc actgcacaac agcaccacta
     1501 tcgacaaccg aacggcgtgt cgaaacagtt gggattcaaa ggttaaatgg gctttaattg
     1561 cttggctgat attgcttaag ccggtaatat tttcggcgat caagcggtga gattttgtga
     1621 aatttttact taacggttca atatgctcac cactgcttga gccttgttca atctgggcta
     1681 gttgccgctc aatattgcct aaattttctg caatagcacg ccagcgataa gcacttttca
     1741 agccccgttc ttgatgataa ttcaatgaat taagcaagcc ctgcaaggct ttttcgccac
     1801 gaacgccgtg ttcatatact tctctatggc gtaacgacat tgcaattttt tgacacgccg
     1861 cagcctgtaa ttccagcacc cgttgaaagc ggaacattaa atcactgtta cttaattgtt
     1921 ggaacagttc gtgatattga taatggctgg aacttgcccg ctctaaaata tcttgagcgg
     1981 tgaaatagta acgcaacatt cgctgtgtcc gttgctgctt gtgctggcgg cttaggcggt
     2041 agaatagggc aactctggtt ttatcaaagg cagccatcac ctcactattg gctttcgcca
     2101 aggctagttg tttggcagct aaatcgtcat catcagggtc aaaataggca gatttcgcca
     2161 gtaaataatg gctcaacgca aggtaggcgg acgctaaatt ctcctgcacg gttcgattcg
     2221 ggaaaatcag gtacaccaaa ataccgacca aaccatagag taaggtgcca agtaagatca
     2281 tcaccacatt gtgataccac aatacttcgg gcgtataagc caggctgtta taaaccgcca
     2341 caatcagcgt gccaaaagca atggtactat agcgttgccc gattgcccct aacattacca
     2401 gcaaaaaggt gcaaaccacc gccaccggca caaacagcca gcccaaatgg agcgacacac
     2461 tcgccccaat cgaggaaagc gagaacgcca ctaggctgat aatcagattt ttcgctcgtc
     2521 cgattaggct gttgtctaaa tccaccaaac cgccggcgat aatgcctaac atcaacggca
     2581 tcgcaaaatc agaaataccg agctgccaaa tgctgaccgc cgcaatgttt agcgaaataa
     2641 acatcggcag ggttttaatt acattttccg aaagccaact gtgttgtaga tatcttaaaa
     2701 atttattcat atttgctcat ttcgggcagg cacaggacct gcccctacct acactacccc
     2761 aaacgttctg ccaaatagcc atcataatcc ggcacattca cgctgattgc ttgattgaac
     2821 aaatccgcat ttaacagaaa attagcggtg gtttcgttaa tcgccaccgg aatattccaa
     2881 acggtcgcaa tccgcatcag ggctttcaca tcaggatcgt gcggagcggc attcatcgga
     2941 tcccaaaaga acaccagcag atcaattttc ttttctgcga tcagcccgcc taattgctga
     3001 tcgcccccca tcgggccgct taacaatgaa gtaatttcaa gccctgtttc tctggcgagc
     3061 aaatgcccgg tagtgccggt ggcatatagc ttatgcgagg caagttgggc ttgatgagtt
     3121 tgtgtccaac gaattaaatc ttgtttacag ctatcgtgag ccactaaggc aatctgtttt
     3181 tgttttgcga tggttctgac ggtggttttc atttttagct cctttgcaaa atttttcaca
     3241 aatcataccg cttatttttc gcttttgcat tgactaatca cggcttatgg ctaaaatcag
     3301 gtaaaaattc gcattttaaa acaaaggatt aaccgcaatg aacttataca acatcaaaca
     3361 ccctgaagaa caagtcaatt tcgcccaagc ggtacgccaa ggcttaggca aaaatcaagg
     3421 gctatttttc cctgaagtgt tacctaaatt agatagcatt gatgaattat tggatttacc
     3481 tttggttaaa cgcagccaaa aaattctttc agccttaatc ggcgaagagt taccgcaaga
     3541 aaccttaaat gcaatggtaa aaaatgcgtt cactttcccg gcaccgcttg ccaaagtcaa
     3601 tgatgatatt tatgcgttag aattatttca cggtccgact ttagccttca aagattttgg
     3661 tgggcgcttt atggctcaag ccttagccaa tgtacgagga gacggcaaaa ttactatttt
     3721 aaccgctacc tcaggtgaca ccggtgcggc ggtggctcat gctttctatg gtttggaaaa
     3781 tatcaacgtg gtcattcttt acccgaaagg caaaatcagc ccattacaag aaaaattatt
     3841 ctgtacctta ggcggtaata ttcgcactgt tgcgattgaa tccgactttg atgcttgcca
     3901 agccttagtg aaacaagcct ttgatgatgc cgagctacgc caagcgattg gtttaaattc
     3961 cgcaaattcc atcaacatta gccgtttact ggctcaaatt tgctactact ttgaagcagt
     4021 tgctcagtta ccaaaagaaa aacgagataa cgtagtggtt tcagtaccaa gcggtaattt
     4081 cggtaactta accgccggct taattgccaa aacattaggt ttaccgatta aacgttttat
     4141 tgcctcaacc aatgccaatg acaccgtgcc acgctattta caatcaggca aatgggaacc
     4201 aaacgcaacc gttgcaaccc tttctaatgc aatggacgta agccgcccga acaactggcc
     4261 acgagttgaa gaattattta aacgcaatgg ctggagtttg tctgaattgg gttctgccgc
     4321 attaaacgat gccgaaaccg aagcggcttt gaaagctcaa tatgcagaag gttatctgtg
     4381 tgagcctcac ggtgctattg cttaccaaag cttgaaagat cagctacaac aaggcgaaac
     4441 cggtattttc ttatgcaccg ctcacccggc aaaattcaaa gagtcggtgg aacacatttt
     4501 agcgattgaa ttgccgttac cggaagcatt agataagcac aacaaactgc cactgttatc
     4561 cgatgaaatg gcagcagatt ttgcaacatt gcgtgcatat ttgttgaaat aaatattcaa
     4621 taatagaaaa gggattaagt attaaactta atccctcttt ttatgcatta caagcggtta
     4681 tatttgccta ttattttgca aaataagcag ctaactcatc actaccgcca atatatttac
     4741 cgccgataaa tacttgtggc acagaggttt tacctgtaat tgctcgtaca gaaattgtgc
     4801 ttgcatcacg acctaacaca atctcctcaa aagtatagcc ttgctctttt aataatgctt
     4861 ttgcttttgc acagaacagg caacccggtt tagtgataat cgaaacagac tctttagctg
     4921 tccaatttgg acttaaatat ttaatcattg tatcggcatc tgatacttta aacggatcgc
     4981 ccggttcttg tggctcaata aacatttttt ccacaatacc gtttttcacc agcatcgaat
     5041 aacgccaaga acgtttacca aacccaaggt catttttatc aactaatagc cccatacctt
     5101 ctgtgaactc accattacca tcaggaataa cagtaatatt ttcagattct tgatctgctt
     5161 tccaagcgtt cattacaaag gtatcattaa ctgacataca gatgatatca tctaccccta
     5221 atgccttaaa ttcacaagct aattcattat agcgaggcaa atgtgttgat gaacaagtcg
     5281 gtgtaaatgc tccgggtaat gaaaacacaa ccaccgtttt gttattaaat aactcatcgg
     5341 ttgtgacatc aacccaagca tcgttttgac gtgtacgaaa tgttacactg ggtactttct
     5401 gacccgtcat atctttaaaa gacatattaa tgttctccta tagaattata tattacaaaa
     5461 atcttaggca ttatactcac aaatatggca taattcagcc tatcagaaca ataggaaaaa
     5521 tttaaattgg aggaatcaag tgaatattcg agatttagaa taccttattg cacttgcaga
     5581 acataagcat ttccgtcgtg cagcagaatc ttgtaatgtt agccaaccta ctttaagcgg
     5641 gcaaattcgc aaattagaag gcgaactagg cactattctg cttgaaagaa ccagtcgcaa
     5701 agtcctcttt acgcaagcag gcttaacatt agttgaacaa gccaaggtag ttttacgtga
     5761 agtaaaaatt ctaaaagaaa tggcaagcaa ccaaggtaaa gagatgtctg gcccgcttca
     5821 tgttggtgta atcccaacct tggggcctta catttcgcca attattgtgc ctgcattaaa
     5881 agcagaattt gcagatttag agctgtatat ttacgaatta caaaccaacc aattattaga
     5941 tcaacttgaa tccggccagc ttgattgtgg cattatctca tttgtaaaag agagtgaatc
     6001 ttttattgaa gtgcctatct ttaatgaaga aatgtacttg gtagttccag aacaacacga
     6061 atgggcagcg cttaaaaaat tcgatatgaa tttattaaaa aaccgtgagt tgctcttttt
     6121 agacagtggc cattgtttac gcactaatac gctagactat tgtctatcca ttggagcaaa
     6181 agaaaatcca cactttaaag ctaccaacct tgaaacctta cgcaatatgg tagcagcaaa
     6241 tgttggccta gcattgattc ctaaattagc cgctaaaccg attaaaggag tacattatat
     6301 tccacttgaa aacccgaaac cgtttcgagc tgtgggaatg gtgtatcgac caggttcacc
     6361 attacgcgcc cgctatgagc gtttagctca agccattact aaaattatgc aatccgaggc
     6421 gtaaaaatgg caaacggtat gagtgtgcgc gcaattcaga aagaaaaaac acgcagagca
     6481 ttagtagaag ccgcctttaa tcaattaagc tcagaaaaaa atttctctaa tctcagtttg
     6541 cgtgaagttg cacgtgaagc tggagtcgca ccgacttcgt tttaccgcca ctttaaagat
     6601 atggacgaac taggcttagc aatggtggac gaatccgggc tactattacg ccaattaatg
     6661 aggcaagctc gaaaacgaat tgcaaatggc ggaagtgttg tcgtggtttc agtggaaaca
     6721 ttcttcgaac tgattgccga ccgccctaac gttttccagc tattactacg cgaaagctcc
     6781 ggtacatcgc aagcgtttag aaccgcagca tcacgcgaaa ttcaacattt tgtagctgaa
     6841 ttggcggact atattatgag caaagataat cacagtaacc gagaacttgc ttatattcaa
     6901 tcggaaggtt tagtcacgct agtatttact gccggttctc atgctttgga tatgaacaat
     6961 caagaacggg aaaaactaaa gcaacgtgtc attatgcagc taagaatgct gattcgtggc
     7021 tccacctatt atgccaataa acaagcttca tcaacataaa aaaacagacg cctaagcgtc
     7081 tgtttttatt ctttcgtaat atatgcagtc gatagcttta accattctag tgctaattga
     7141 tgatgttcag ataacgcatt ccataacgca tcttctgaca agatactata attgccttta
     7201 gtatctaact gttcatcaaa actatcatgt aattcacgcc attccgggct agcataaaac
     7261 cgacttaagg gttccaaaag tgcagaagct cgtttccatt gctcaatccc cttttccaat
     7321 tctggtaata gctctaccca ttggttataa caatcctgca ttttctgaat atctgctttt
     7381 ttcattcttt accgcttaca ccataaattt tagcctcaat ataacataaa aatccccttc
     7441 cgaagaaggg gatttcaact caattaggct aaattaccac tggtatccaa cgcctacacc
     7501 gccaccaaag tcgcctcggc tattcgcatt accttgtaat ttcaagataa gcttaccgtt
     7561 atcacttgaa cgtgaataac ctactgcaag cgcgttttca cctttaaatg taccacctgc
     7621 tgcagccacc atagatttac ctggaatgta aacctgcggt aacgctgctg ctgcatttga
     7681 accggcaata ccagcacggg cttcacggtt attacgatgg atcttgttat ttaagtgatt
     7741 aacagcacct tttaactgac caacattaac agcatcggta tctgcctcac ctgctttaac
     7801 attagtaata cggttaccac cattatttaa gccatctttc gttaagctta ccgcttttcc
     7861 tgcagagcca ttattaatgg ttacgccatt attgttcacc aatgtatcac cagtcttgct
     7921 agtaaattca ggggtatctg aaacggctac agttacatca gaacctttac gtgtcacttt
     7981 gatattatta cctgcattca cgctcactgt actacctgct tttactttcg caggggcttt
     8041 atccccttca accgcacctg taccaactgc tttagaatct acgttccagc ttacgttgtt
     8101 tacggcattt gctactgttg ttgcattcac aaagcgtgaa ccggtaccgt taggatcttg
     8161 aacattgatt ttgccgttat cagcaacggt taaatctgtg atgtttacgt tcactttcac
     8221 ctcaccagcc ttatcactgg taatagttgt accattacca tttacgatat tgatagaacc
     8281 atcttcatca gtaccaatgt tattaccatt cactttcgca tagttgttca gctgtttacc
     8341 gttgataaca tctgtgctta ctgggctaat atcgccatct gctacattag tgatcttagt
     8401 tggtttaccg tctttatcac cgactttgat gttatcacca tcattagtga ttttcggacc
     8461 attctcactg aactgtacgc tattgaagct cacatctttt gctgtcgcaa aagtaaattg
     8521 attaccatca cgtttaacag ttaagttatc acctgcttca aacacaactt cttcgcccgt
     8581 tttcactagc ttagtcgcag cttggtcacc ggcagcctta ttacctgcag atttaatatt
     8641 aaagcctgca ttattcactg catctgcaac agtttgagca atcaataacg catttggctg
     8701 agttggtgct ttcaccgtac catcttcgtt gttacctaac tcactggtat ttgcagtgat
     8761 gttaccttca ttatctactt taatagtagt accgtcagtt ttcgcttcaa cgttataagt
     8821 agttgaacca tcagcattcg tgctaggtgt gatagttaca cctcggttac cgcccacttt
     8881 cgtagtagct gcattagttg ccgcttgtaa atcacctaag ttcactacgt tgtttagctt
     8941 gtcgccttca gcatttttaa tcgcttctgc acggtcttta ccctctgggg ttgagccatc
     9001 ttcgttacga acactacttg ccacattgcc taattgaaca ggggcttcac ctgtgaattt
     9061 agccgtattg cttggcgttg agctatcagt aggatcttgg tttacaaact caatcgggct
     9121 atctacttta atcgtattct taccgtcttt gttttcaacc gtgaccgttg tacctttacc
     9181 gttaataaaa tcaaccgtgt cattatgtac cacagtatca accgctttgc cgttaccttg
     9241 taaattccag cctgcattta atacatcacc taatgttgct gcattactta acttatcagc
     9301 taagttggtt ggattattgt ctgctggttg aaccttatca tctgcagtca caggtatcag
     9361 attagacgca acattgctaa tcgctttatt acctgcattg ataccatctt tattgatagt
     9421 aattggatta tttgcaggat ctgcttcatc agttggtaca gttacagtgt tagaggttac
     9481 gctgctaaac ttaacatcat ctttagtcgc ataaatgact ttaccatcag cttcttgctt
     9541 cacagttaag tttttacctg caaccatttc aactgcttta cccggattaa tcagttcatc
     9601 accacctgaa agcttctctc caccttctac agccgacgtt ttcaacgtaa agcctgagtt
     9661 attgatggcg ttggtaatat cacctgctgt cactaatttc ttagcatcat cagcggttgg
     9721 ttcatcaatt ctaccgtcat tatttgcatc atttaatgcc gtagtgttag ccttgatcgc
     9781 accggttgta ggatctttta caattgttac atcgtccgta ttcacagaaa gatcgaacac
     9841 attcgcgcca tcagcatttt ttgtcgtgtt aaccgtaact gatttatcag tcgacttcac
     9901 ttcttcacga gatgccatag cgaaagtata aagctgacta ccatttactg catctttact
     9961 atctgcattt acgtcaccgg cagctacatt agttactttg actgcattac cgtctttgtc
    10021 accaacattg atattaccac cattgttagt aatcttagga ccttcatttc cgaactgtac
    10081 actatcaaaa ttcacatttt ttgcagttga aacagtaatg ttattcccat cacgggtaat
    10141 ctcaatgttt ttaccattta agaactgaac cgtatcacct gttttcacca ggctcttctc
    10201 gtcaccgttt gctttaatgt taaaacctgc attgttaatt gcatctgcaa cggttttagc
    10261 tgttactaat gcatttggtt ctgtaggctc ttccacttta ccatcagggt tatttgttaa
    10321 ctcgctggtg tttgccgtga tttcgccctt atcgtttacc ttaatggttg taccatccgt
    10381 ttttgcttca acggtataag tggttgagcc gtcatcgtta gttttagatg ttacagtaac
    10441 acctttatca ccttccactt tggtggttgc tgctttcatt gctgcttgta catcacccac
    10501 attcacagca ttattcaacg tatcacctgt tgcgttgtta atattatccg caatcgcttt
    10561 acgctctgca tctgttggtg ctgctttatc tgcaaatgta ccacccacgc cgctcttcag
    10621 attagtgatt gagcctgttg tatctggttt accattgctc atatcaatgc tgttgaatgc
    10681 aacattatct ttcgttgtgt aagtgaattt accgtcagct tgggtaagtg tcatattttt
    10741 acccgcatca aaggtaactg tttcacttgg cttgattagc tgtgttttct tacctttggt
    10801 ttcaccacca tcaacaccat cacctgctgt tacattaaag cctgaattat tgattgcatt
    10861 agcaatatca cctgccgtca ctaatttctt agcatcgtca cctgtaggct cagtaacttt
    10921 accttcagga gaattattta atgttgtggt attcgcttta acttcgcctg ttgtcggatc
    10981 tttcacgata gtaacgttgt cagtattcac tgtcatatta ccgtcattat cacgaccgat
    11041 agatttatcc gttgcaacat ctaccgtata ttcagtattg cctttatcat cttcctttcc
    11101 ggctttaaca gttacggctt tagaaccagc tactacagat gaggttttct ctgaattatt
    11161 aattgcatca gccacattac cacgagttac tgtaggagca cctgctttcg ctacatctac
    11221 cgtatagatt gtttgaccat tatcacctgt ttcaggtgca ccaacagttg ctaaacctga
    11281 acctttcact tcggttttgt gacgctgctg cttgttttaa ctgacttaca ttcaccgcat
    11341 cagtatcagc ttcacctgct ttcacgcctg taattttggt tggattacca tcattacctg
    11401 caatattaac attaccatct ttattcgtga ttttcgggcc attatcacca aatgttacgc
    11461 tatcaaattt cacatctttc gctgtttcgt acgtgaatat agtgccaaca cgtttaactt
    11521 ttaagttatc gcctgctgca aaaatcactt tttcgcccgg attaatcaac tctgctgctt
    11581 cttgatcacc atcagcttta ttgccaccag attttgcatt ccaacctgct ttttgaatcg
    11641 cttcagaaac tgtttttgta gttgcaactt tatcttcttc tgcaggtgta gttactgcac
    11701 ctgttgtgtt atcaaccgtg atagaaccgg tatccacatc aaaggttact ttacgccatc
    11761 agcttcttgt gtaacatttg aaactgtacc tttaccgttt acaaattgta cagattcatt
    11821 tggggtcact gtgcctttgg tttcacccgc attatcttta atattgaaac cttggtttac
    11881 atagttattt aagttcgtaa ttgcatcgcc aacgtttgtt gcagtattac catactgagt
    11941 tccagctgca ttcgttacat tatatttagg ctgagtcaca gagccatccg gattcacaac
    12001 agaaccgcca ccaaaattat ttgcagttga atttgcaagg ttactggttg cattcattgc
    12061 catataaagt tgtgaaccat taatcgcatc ggttgatgta gcagaaatct gacccgctgc
    12121 cacattttgg atttgacgct ctttacctgc agagcctaca gaaacaacat agttagtatc
    12181 tttatttacc ccggcaaagc cattataagt aataccccct accgttgcat tttcagttgg
    12241 tgttgctgcc cttacgactg attcgctacc caaagcaaca gaactattca gagtagcttg
    12301 agctcccata cctaatgctg tagcaaattg agctgttgca ttagcacgtg taccaacagc
    12361 cactgctgat tgtgctgagg caattgaatt tgcacctacg gctaaagagg catttgcact
    12421 cgcatttgct gcaacaccaa aggcagaagc tttttcagcc gttgcattag cattagaacc
    12481 taccgctgta gcatcacctg ctgtcgcatt tgtttggcga ccaagtgcgg ttgtaccatt
    12541 agccgttgca tttgctgaat gaccaactgc cgtagcttga ataccttttg aaaccgtagc
    12601 aacacctaaa gataacgctc cgttaccatt tgcatttgag tttgtgccta atgctactgc
    12661 cgcttgctct ccacctgttg ccgttgcatt cgggccgatc gcaattgagt ttctgctctt
    12721 cgcgccatca ttagcttgat tctcaggtac ggttgaattc acagagaaat attgaatttg
    12781 gcttgcttgc gcaggaatat tgacagaaag atcataaata accgtgccat ttgcatttct
    12841 ctctgtactt tttacagtta ctgtaccatc gtttgaaaca acagtagctt gggtatcttt
    12901 cgtaaagtca tcaatggctt tcttagttaa accaatttca tagttagttg tattcgcagc
    12961 agttgcagct ttacctgtta cagtaatgta atcagggcta gaagaatttg ccgtggtgtt
    13021 atacgcattt actgtataaa tagtttgccc atttgcaccg gttgcatttg taatattaac
    13081 attgctacct gcaacaactt ctgtttttac cgcttttaat gcttcttcaa tcgtattttt
    13141 atttgttcca ccaatattag tataggtaac agaaccatca ggctttactg tagcattacc
    13201 acctaaaata tttttagttg aattagcaag gttacctgtt gcgttcattg ccatataaag
    13261 ctgtgaacta ttaattgcat cggttgatgt agcagaaatc tgacccgctg ccacattttg
    13321 gatttggcgt ttgatcgtgt ttgagccaac agaaacaaca ttccctgctg ccgtagtatt
    13381 agccgcaaag ccggaataag taataccatt taccgtcgca gaaggaactg ccacagcgtt
    13441 ggaaacggtt gaattactcc ctaaagcaac cgaattattt agcgctacat tagcacctga
    13501 gcctaaggca atagcaaaac cggcacttgc tttagcacta tcaccaattg caaccgtaga
    13561 ttggttggaa gatactgcac ttacccctaa agctgtcgca ttaacacctg aaactgtcgc
    13621 attataacca atcgctgtac ctctagttgc agtagaagtt gcattagcat tagcacttga
    13681 acctaaagct aaagaataag tagcatttgc aacagactta tcccccattg cacctgaacc
    13741 cattgcaaat gaacgagtgc cactagcggc agatctccat cccattactg ttgaacggtt
    13801 accagtagct agagctcctg caccaaaagc tgttgcacgg ttacctgttg cagcagtatc
    13861 cgtacctaat gcaatagcat ttgctgaagt cgctctagcc cccataccaa tagcaataga
    13921 aggaactaat gcccaattct gaccagtgtt attgagactc tctacaccaa tattatagta
    13981 atgtaagaag tatcttctgg atccactaaa tttgttctat gcgttgcatt cgtatctgta
    14041 ccaattgcaa tagtagatct gccagttgag attgaatccg caccaatagc aattgcgttc
    14101 tccgatgatg cagttgcttg tgttgaaata taattacttg ttgttgaacc tataagatac
    14161 aacagccaca gcatcattag ctcccaacac ggcactagct ccagccaata aagccaatgt
    14221 tgccttactt gcagaactaa cagatttcgt tttacctttc gctcgttgta attcagatac
    14281 tgcaacccaa ctttgtgttg cctgattcca aataacttta aaaatttgat tcataatcga
    14341 ccctatataa aaataaaaaa gattacgtag aacctatgtt caacataatc ttcaccaata
    14401 taaaaaaccg ccacctattt aagtgaaata acttacttat agactcagaa atttaagtgc
    14461 gcgtatttta cgctatttgt aatataattc atcttctgga gtgtaaattt attgtaaata
    14521 atacgaggaa tctaaccgct tgttataacg caaaacacct tgacttaaat caagccacta
    14581 cctcattttg aggggagatt tatacgcagt gaaattttaa aataagctaa ggtttacgga
    14641 taatcgttca acactattga attatcactg tagttatcgt taaaaaggta tgcttttatg
    14701 aaccaattct tccctctaat ctttagctta actctatttt ccggcgtaac tttggcacta
    14761 gaaaaagcac ctcgaactat gccgacagaa ggaataaata agcccctact tggacaaatt
    14821 ctattctttg acaatatgct gtcacacaac ggttcacaaa actgctccag ctgccataat
    14881 ccggattatg cctttattga taaccgcact actccggcaa aaggggtggt ttcacaagga
    14941 gatactccaa ccaaattcgg caaacgcaac tccccgacca tgctttatgc gaaatactcg
    15001 cctgagttcc actttgatga gcaaagtcaa gaatatatcg gcgggcagtt ctgggacgga
    15061 cgagccaaaa atctcgccga gcaagccggt atgccgccta tcgacccaaa tgaaatggga
    15121 atgcctaaca aattagaagt agccaaaaga ttatataatg tgccgatgta tcagcgattt
    15181 ttagggcaat tttacggtga aaaggtatgg gaaagttatg aaagcgttta tgcggcaatg
    15241 gaagatgcga ttgcgacatt ccaacaagaa aacaaacttc tcgctccatt tgattcaaaa
    15301 tatgatctat ttttaaaagg cgaggtacaa ttaactgcat tggaagaaaa aggcagagct
    15361 ttatttttca ataaagctca aactaattgt agtagttgcc accaattaca gagtgctgca
    15421 aaccaccaag aagaaacctt tagcaactat cactattaca atgtaggcgt acccggtaac
    15481 ccagacttga tagcggttaa cggcttcgca ccagacttcg tcgatttagg cttatttgaa
    15541 aacccaaatg ttaaaggtga tgaaacacaa aaaggcaaat tcaaaacccc aacattgcgt
    15601 aatgttgccg tgactgcact ttatatgcac aacggtgtgt ttaaagaatt aaagactgtt
    15661 ttgctgtttt tagacagcta caataacccg gagcgaaaaa tcaaccctga aaccggcacg
    15721 gcgtggcaac aagcagaatt tgaacccact atcgcccacc aaaaactcaa agccaaaccc
    15781 ttaagcgatg aagaaattga tgccctcgaa gcatttttaa aaaccttgac ggatgagcgg
    15841 tatagaaaat aaggctacaa gcggtaaaat tttggggaaa ttttaccgct tgcgtttaac
    15901 taccgtgtta gctcactttc taacttttcc aatgcctgca aatcttccca atctgcctct
    15961 ttctgtttta aacatttacg ctgaatatca aatttttcgt attgctctct gacaaagctt
    16021 tccatttgtt tatgcgtgat tgttccacca tttcctaata cagaaaagcc gttaaactca
    16081 atcaacatat ctacatttct tcgccagaaa cctaacgtaa gatcttggtt gttcttcaca
    16141 cgtaattcgg cactttcaag aaagatcatt accaagcgat ttaaagaatc cagctcatta
    16201 ttatctaaat agtttttcgc aatcacaata tcgcctttac gcacgacttt tcctttccag
    16261 ctagttaatc ccatattcat cttagtcgca tcagcacgtt gacaaatcaa ctcagcggca
    16321 gtgtgtttgg ttattgcata aatgagctta ttttgcgttt ctgcaaaaaa catttgcgta
    16381 tttttatctg ttttgtcgta atcgctagag agtttgaaaa gctctcgtac tttttgatag
    16441 aaacgcaatt cacttgcccg aatctcacga atctgttcaa gtaattcatc gaaataatct
    16501 aaacgaccct gcggattttt caaacgctcg ctatcaatta aaaaaccttt ttcgagataa
    16561 gtgcgtaatg tgctgtttgc ccattttcta aactgtactg ctcttgggct acgaactcga
    16621 aaccctatcg ccagaatcat ttcaagtgaa taatgtttta cttgataatt cttgccatct
    16681 tgagcagtta tcaagtaatc cttgataact gaattctcat ctaactcttt gtcttttaag
    16741 atatttttaa tgtgttcgga tatattttgc acagaggtgt caaaaagttc tgcaagttga
    16801 ttttgtgtca gccaagcttc attttcaacc actaacaagg ctacattgct tttgccgtct
    16861 tccgtattat aaataattaa atcg
//
LOCUS       DANMBQ010000043        16778 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.043, whole genome shotgun sequence.
ACCESSION   DANMBQ010000043 DANMBQ010000000
VERSION     DANMBQ010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16778
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.043"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..430
                     /gene="nudB"
                     /locus_tag="PXE92_001195"
     CDS             <1..430
                     /gene="nudB"
                     /locus_tag="PXE92_001195"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HDL5760451.1"
                     /translation="NPHSILVVIYAKNTQRVLMLQRKDDPDFWQSVTGSINIGETPLE
                     AAEREVSEETGLQTFEQKQPLVDCQKQIEFEIFPHFRYKYAPNITHCVEHWFLLPLDS
                     EQEPILTEHLAYRWVSVEDAVRLTKSPNNAQAIQEYLTSK"
     gene            443..1183
                     /locus_tag="PXE92_001196"
     CDS             443..1183
                     /locus_tag="PXE92_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5760452.1"
                     /translation="MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTS
                     SNPRLRAAVDKALSSNMTRDTINRAIERGVGGGDDTNMETKIYEGYGPGGTAVMVECL
                     SDNANRTISQVRPSFTKCGGNLGTEGSVGYLFSKKGLILVANADEDALTEAAIEAGAD
                     DIQPQEDGSFEIYTAWEDLGSVKDGIEAAGFKIENAEVTMIPSTTVELDAETAPKLLD
                     LINRLEDCDDVQNVYHNGEISDEVAALL"
     gene            1313..1840
                     /locus_tag="PXE92_001197"
     CDS             1313..1840
                     /locus_tag="PXE92_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760453.1"
                     /translation="MKLVKFVPALAATLVLAACSNANTQSAPQQAQDAVTKVAEQATQ
                     QVNEIAGNAPRASGAVKVEKATDGAKSIVYRCQSGKRVTANYVFQGEEAKAVNLLVQS
                     GGKTQKIPTLTRDASNQDSTSFKTDKYSWDLDTGFTLSSNGQSGMLTKYGAKTDTIVA
                     KLCDVDKALTSKLNK"
     gene            1907..2485
                     /gene="ruvC"
                     /locus_tag="PXE92_001198"
     CDS             1907..2485
                     /gene="ruvC"
                     /locus_tag="PXE92_001198"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HDL5760454.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQNGRQLEYLGSGAIRTTAEDLPTR
                     LKRIYAGVSEIITQFQPNMFAIEQVFMAKNPDSALKLGQARGTAIVAAVNHDLPVFEY
                     AARLVKQTVTGIGSADKVQVQDMVTRMLKLSAKPQADAADALAIAITHAHSIQHSLIV
                     AKQSQQNVSSEKEQILALMKTRYSRGRFRLKG"
     gene            complement(2551..3831)
                     /gene="murA"
                     /locus_tag="PXE92_001199"
     CDS             complement(2551..3831)
                     /gene="murA"
                     /locus_tag="PXE92_001199"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDL5760455.1"
                     /translation="MEKFRVYGPFSLNGTVDISGAKNAALPILFAAILAEKTVTLKNV
                     PDLKDVDTTFKILRQLGVTVEKGSDKGVVHIDASKINNYVAPYELVKTMRASIWALAP
                     LVARFQLGQVSLPGGCTIGARPVDMHISGLEKMGAKIELDEGYVKATSNGRLNGARIY
                     MDKVSVGATLSVMMAGTLAKGTTVIENAAREPEIVDTADFLNAMGAKISGAGTDMITI
                     EGVEHLGGCEHSVVPDRIETGTFLVAAAISGGRITCRNTKADTLDAVIEKLREAGMQV
                     DVTENTITLDSLGRRPKAVNIRTMPHPGFPTDMQAQFTLLNTVAEGTSRITETIFENR
                     FMHIPELIRMGAKAEIEGNIAICYGVEQLKSAEVMATDLRASISLVLAGCIATGETIV
                     DRIYHIDRGYEHIEEKLRQIGARIERFSAPFEGE"
     gene            complement(3941..4201)
                     /locus_tag="PXE92_001200"
     CDS             complement(3941..4201)
                     /locus_tag="PXE92_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL5760456.1"
                     /translation="MNPSQIEEILKQALSDATEVHAQGENAHFGVIVVSDSIASLSKV
                     KQQQAVYAPLAEYFTTNAIHALTIKVFSVEKWKTERLLNMVG"
     gene            complement(4234..4557)
                     /locus_tag="PXE92_001201"
     CDS             complement(4234..4557)
                     /locus_tag="PXE92_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HDL5760457.1"
                     /translation="MPQKTLQWDIQQNNESLFVKLSGELTRNTLLPLWKQRASFLSPT
                     GKQSLYWDLKEITRIDSAGFTLLAELLNHYHKIIPNSLINTPDSVRTLAALYDLDGWF
                     EQFII"
     gene            complement(4569..5204)
                     /gene="mlaC"
                     /locus_tag="PXE92_001202"
     CDS             complement(4569..5204)
                     /gene="mlaC"
                     /locus_tag="PXE92_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HDL5760458.1"
                     /translation="MLKNIKKIIVTGLVAVSALFSTTAFAETSPYVLMQQTADKLFGD
                     IKANQAKIKSNPEYLRTIVRNDLMPHVHVKYAGQLVLGKNLSAATDAQKEAFFNAFGQ
                     FVEQSYAQVLTQYQDQSVQIESPKSVDGKSIVSIRVNVSGKGAAQPIKLDFKWRKNSK
                     TGEWQAYDMAAEGVSMVATKQNEWAGVIRQKGIDALIAQVAQSAKQPITLK"
     gene            complement(5250..5774)
                     /gene="mlaD"
                     /locus_tag="PXE92_001203"
     CDS             complement(5250..5774)
                     /gene="mlaD"
                     /locus_tag="PXE92_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HDL5760459.1"
                     /translation="MRQSIKYEFWVGLFVLLGLAALVFLGLRVANVQGFSNEKTYTLY
                     ATFDNIGGLKVRAPIKVGGVVVGRVADISLDNKTYTPKVALAVNESFNQIPDTSSLSI
                     KTSGLLGEQYVALNVGFVIEGETAMMKEGDTFVDTNSAMVLEDLIGQFLYGDKKSDKT
                     EDEKASDSAEPKAE"
     gene            complement(5795..6571)
                     /gene="mlaE"
                     /locus_tag="PXE92_001204"
     CDS             complement(5795..6571)
                     /gene="mlaE"
                     /locus_tag="PXE92_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HDL5760460.1"
                     /translation="MVNFISSIGAVVINFIRTLGRSAFMLWGALIGKPEFRKHTPLLI
                     KQLYVLGVQSLLIIMLSGLFIGMVLGLQGYVVLVDFAAESSLGTLVSLSLLRELGPVV
                     TALLFAGRAGSALTAEIGLMKATEQLSSLEMMAVDPLRRIIAPRFWAGVISMPVLAAI
                     FTAIGIWGGSLVGVDWKGVDGGSFWSVMQNSVNTSDLINGFIKSVIFAFAVVWIALFN
                     GYDCVPTSEGISQATTRTVVNASLVILGLDFILTAIMFGG"
     gene            complement(6564..7367)
                     /gene="mlaF"
                     /locus_tag="PXE92_001205"
     CDS             complement(6564..7367)
                     /gene="mlaF"
                     /locus_tag="PXE92_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HDL5760461.1"
                     /translation="MTKTENLVEVKNLTFKRGERVIYDNLNLQVQKGKVTAIMGPSGI
                     GKTTLLRLIGGQILPESGEILFDGRDICKANNKELYEIRQRMGMLFQSGALFTDISTF
                     DNVAFPIREHTRLPEELIRKLVLLKLEAVGLRGAANLMPSELSGGMARRAALARAIAL
                     DPDLIMYDEPFTGQDPISMGVIVELIKELNQALNLTSIVVSHDVKEVLSIADYAYIVA
                     DKRVIAEGTPEILQASEDPQVVQFLAGKADGPVRFHYPAKDYTEELFNG"
     gene            7592..8986
                     /locus_tag="PXE92_001206"
     CDS             7592..8986
                     /locus_tag="PXE92_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HDL5760462.1"
                     /translation="MNKTMKKSFLTAFILGSTIAAMPAYAEATLPTAVNGQAVPSLAP
                     MLEKVRPAVVSIAVEGKTKGDSRRSREIPEEFEFFFGPHADLFGNRSSAPRNFRGVGS
                     GAVINAEKGYVITNNHVIDNADKITVKLEDGREFKAKLVGADPLSDVALIQVEDPKNL
                     TEIKFADSDKLQVGDFTVAIGNPFGLGQTVTSGIISALGRSTGQSDEGYENYIQTDAA
                     VNQGNSGGPLINLNGELIGINTAIISPSGGNAGIAFAIPSNMANSLVTQIIEFGEVKR
                     GMLGIKGGELNADLAKEFNISTQQGAFVSEVLPDSAAAKAGFKAGDVITEINGQKIRS
                     FSELRAKVATSGVGKEIELTYLRDGKEAKAKVTLQSDSEAKVTASNLIPALKGADFNN
                     YNAKGIKGVEISNVEKGSIAEMRSLKKGDIIIGVNRHSVENIADLRKILETKPSVVAL
                     NIVRDGANFYVILQ"
     gene            complement(9038..9799)
                     /locus_tag="PXE92_001207"
     CDS             complement(9038..9799)
                     /locus_tag="PXE92_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HDL5760463.1"
                     /translation="MKTREQLSQENYQQAVKFAQHFADDVRQEFEREAEQRYQFERTQ
                     FEQSVLQNNAQNRPLAKIASLSCVAILLLAMTYYGLSGRYQVVQSGLQQHQDFQQQMS
                     DAHGTSKNERYILSLQNQLRENPNNGDLWYELGQAYALSNDFDSALVCYDNAEKLLGK
                     RAAILGAIATARYYDNGQKMTVEIQAIIEQALQLDKNENASLLLLASDSFLNNNFQQA
                     LDNWRKVLDSNNDSINRRAIIQSMEMARQMLNSQQ"
     gene            complement(9786..10238)
                     /gene="nrfF"
                     /locus_tag="PXE92_001208"
     CDS             complement(9786..10238)
                     /gene="nrfF"
                     /locus_tag="PXE92_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HDL5760464.1"
                     /translation="MRNSIISIGFLQKIRKILPLVFGLLLFVGTVQAEMVDTFQFQNE
                     ADRVRAISLARSLRCLQCQNQNLVESNATAAYNMRIEVYEMVNQGKSNEEIIRIMTER
                     FGSFVNYDPPFTPQTWVLWGLPVGLFSLLFLAILWRTRKNKGNKNENA"
     gene            complement(10228..10761)
                     /locus_tag="PXE92_001209"
     CDS             complement(10228..10761)
                     /locus_tag="PXE92_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HDL5760465.1"
                     /translation="MKKILLLIPLLLLVVIVGFLTVPLMNKDALAPTEDWQGKPFPEF
                     VGKNLLDSNAHLNNNSLPKEPYILNVWVSWCTWCIKEFPILLELKQKGVPIVGLTYSD
                     RPNDALNALKNWGNPFSLIIDDYEKGFLIQTLKVSSAPSSYLIDKHGVVRYQQKGYNP
                     DFAQDFLPKLEALRNEK"
     gene            complement(10758..12662)
                     /gene="nrfE"
                     /locus_tag="PXE92_001210"
     CDS             complement(10758..12662)
                     /gene="nrfE"
                     /locus_tag="PXE92_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfE"
                     /protein_id="HDL5760466.1"
                     /translation="MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTY
                     LQAAFTTFSFSTLAYAFLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTA
                     LVIWSAVFCKFSQKIDRLFANRTLAMLGLIALGFLLFILLVSSPFERGFPPPPEGRDL
                     NPMLQDIGLIFHPPLLYLGYVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFL
                     TAGIILGAWWAYYELGWGGWWFWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTI
                     LLAIFAFALSLLGTFIVRSGVLTSVHAFAVDPDRGMALLILFFGLSFIALALFAFRAN
                     LWQGKVRFNLLSKETAFLLINGLFSVAASVVLLGTFYPMIFTVMNWGSISVGAPYFNS
                     VFTPLALLLMIVMGFAVVLGWKQISNKQILVKLWLLPIAVGLALGLIYASISQREHFA
                     LQPLPTIFISLAIWIILTHLPYSQKMWQIRPLAMRLAHIGFAVCVIGAMMNSYYGDEI
                     GVRLKPNQAAELAGYTFKYEDYHDLIGPNYTAEQAVFSISRDEQLLATVTPERRYYDV
                     RTMTMAEVGLFHHNLDDIYIVMGDKFGNLEYAFRLHYKPYVQALWLGGMMMVMAALLA
                     LFGYRRENKK"
     gene            complement(12932..13879)
                     /gene="nrfD"
                     /locus_tag="PXE92_001211"
     CDS             complement(12932..13879)
                     /gene="nrfD"
                     /locus_tag="PXE92_001211"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HDL5760467.1"
                     /translation="MNEYVPFQTPNLVWDGTIAIYLFLLGISSGAVQLAIAYRNSGVK
                     MEKPSQNWIIRSAAILGTLPTIIGLLLLIFHLTKPWTFWKLMFNYNFTSVMSMGVMLF
                     QLYMAVLVVWIAIMFKDWIVRYLPVVSGLIDFAEAKLLKPIEFILFVLAAVLGAYTGF
                     LLSALVSYPMLNNPVLPALFLASGASSGIAATFLVILLAGKLSGESHEVHFMHKFEVP
                     IMVTELGLIVAFFVGLHFGGADKSLALTHALNGFWGNVFWIGVMLIGIAIPLVANIFG
                     SHRLKHNVKFIILISVFDLIGVLCLRYFILYAGQLTVAS"
     gene            complement(13879..14556)
                     /gene="nrfC"
                     /locus_tag="PXE92_001212"
     CDS             complement(13879..14556)
                     /gene="nrfC"
                     /locus_tag="PXE92_001212"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HDL5760468.1"
                     /translation="MTCTRRDFVSGAGAIAVVASTGLATSITLATEKEQKKIRYAMVH
                     DETACIGCTACMDACRTTNKVPEGVSRLEIIRSEPFGEFPNVQYEFFRQSCQHCTNAP
                     CVSVCPTGASFIDPETGIIDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSADKCNFCRD
                     TNLAEGKQPACVEACPTKALTFGDMNDPSSDIFHKVKNNPVYRTKTALGTEPNLYHIP
                     FGKGEHR"
     gene            complement(14556..15212)
                     /gene="nrfB"
                     /locus_tag="PXE92_001213"
     CDS             complement(14556..15212)
                     /gene="nrfB"
                     /locus_tag="PXE92_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HDL5760469.1"
                     /translation="MKKLISKAGRAVALIQAVVFAGFFAISSANALMPEQPKPLWQSE
                     TADDAKVAQDARRDPNKYCTQCHESANATGKPFHHAGKHFQKDVKSPNNGEPLTCISC
                     HGNISESHRKGAKDVMRFNPHGKASNPSLERSVNEQNQVCFACHTAEKLREKFWAHDT
                     HATKIACTNCHEIHPEKDPMKDIPEKDRIKLCTDCHTKIHSGEFKNPEMKATEAKGTK
                     "
     gene            complement(15231..16733)
                     /gene="nrfA"
                     /locus_tag="PXE92_001214"
     CDS             complement(15231..16733)
                     /gene="nrfA"
                     /locus_tag="PXE92_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HDL5760470.1"
                     /translation="MKFLIKSLAVATISILGCLQTALAEEAKTESLTDKAVKHEKLGV
                     KIESANHLFAEKYPLQYDSWKSTAKSTDRGSALEADPRYVILWAGYAFAKDYNKPRGH
                     FYAVTDVRDILRTGAPKDENDGPQPMACWTCKGPDVPRLIEEKGERGYFDPKWAKYGA
                     EIVNSIGCADCHDTTSEEFKQGKPALRVARPHVLRALNTVGWKFEDLDKHGKRPAVCA
                     NCHVEYYFKNKTDVTFPWDKGVDVDSIEKYYDEINFTDWTHALSKAPMLKTQHPDFEV
                     WSQGTHGKNGVTCIDCHMPKVKDKDGKVYTDHKIGNPFDQFEATCKTCHEQSKETLEK
                     RVKEYKHEVKEAMIRLEDQLVKAHFEAKAAWEAGATQEEMKEILMAIRHAQWRWDYSA
                     AGHGNHFHAPDVMLRTIATGIDRAADARAKLGVVLAKHGVTTPVAIPDISTKEKAQLA
                     IGLDIPKEQAAKDEFLKTVVPQWEKEARAKGLLPAEEADKPVAAPKAEAK"
BASE COUNT         5015 a         3724 c         3332 g         4707 t
ORIGIN      
        1 aaatcctcat agtatccttg tggtgattta tgctaaaaat acccaacgag tattgatgct
       61 acaacgcaag gacgatcctg atttttggca atcggtgacc ggttcgatca atattggaga
      121 aacaccgctg gaagcagcag aacgggaagt gagcgaagaa accggtttgc aaacttttga
      181 gcaaaaacaa ccgcttgttg attgccaaaa gcagatagaa tttgaaattt tcccgcattt
      241 tcggtataaa tacgcaccta atatcacaca ttgtgtcgaa cattggtttt tgctgccact
      301 tgatagtgag caagagccta ttttaaccga acatttggca tatcgttggg tttcagtgga
      361 agatgcggtt cgactgacta aatctcccaa caatgcccaa gcaatacaag aatatttaac
      421 atcaaaataa ggaaacaaca gaatggcagg ccatagtaag tgggcaaata ttaaacaccg
      481 taaagcggca caagatgcac aacgcggtaa aatttttact aaattaattc gtgaattggt
      541 gactgccgcc aaactcggcg gtggtgatac ctcttccaac cctcgtttgc gtgcggcggt
      601 ggataaagcg ttatccagca atatgacccg tgataccatc aaccgtgcaa tcgagcgtgg
      661 tgtaggcggt ggcgatgata ccaatatgga aaccaaaatc tacgaaggtt acggcccggg
      721 tggtacagca gtgatggtgg aatgtttaag tgataacgct aaccgtacga tttcccaagt
      781 tcgtccaagt ttcacaaaat gtggcggtaa cctaggtact gagggttcgg taggttattt
      841 atttagcaaa aaaggcttaa ttttagtggc aaatgccgat gaagatgcct taactgaagc
      901 tgctattgag gccggtgcgg acgatattca accacaagaa gatggtagct ttgaaattta
      961 taccgcttgg gaagatttag gctcagtgaa agacggcatt gaggctgcag gctttaaaat
     1021 tgagaatgca gaagtaacaa tgattccatc aactaccgtt gaacttgacg cagaaactgc
     1081 accaaaactt cttgatttaa tcaaccgcct tgaagattgt gatgatgtac aaaacgttta
     1141 tcacaatggt gaaatcagtg acgaagtcgc tgcattactg taataaaaaa atcacgcaaa
     1201 ataagcataa tttaggttat gcttattttt tatgaacttt tttcctatat tactgactaa
     1261 cctaatgtag tttatatgct actactttac tataacattt taaggagagt ctatgaaatt
     1321 agtgaaattt gtccctgccc tagcagcaac tttagtatta gccgcttgct ctaatgcaaa
     1381 cacacaatct gctcctcagc aagctcagga cgctgtgact aaagtggctg aacaagcaac
     1441 acagcaagtg aatgaaattg caggtaatgc acctcgtgca agtggtgcag taaaagtaga
     1501 aaaagcaact gatggtgcaa aatcaattgt atatcgttgc caaagtggta aacgtgtaac
     1561 tgcgaattat gtcttccaag gagaagaggc aaaagcagta aatctattag tccaaagcgg
     1621 cggtaaaaca caaaagatcc caacattaac tcgtgatgcc tcaaaccaag attctacttc
     1681 attcaaaacg gataaatatt cttgggattt agacacaggc tttaccttat catctaatgg
     1741 ccagtcaggt atgctaacca agtatggtgc taaaacagat accatcgttg ctaaattatg
     1801 tgatgtagat aaagcattaa cctcaaaatt aaataaataa tctttcttga ttttactact
     1861 cataagcgag aagataatat cttctcgctt attttattgc acaaagatgg ctattatttt
     1921 aggaattgac cccggctcaa gggtaacagg ttacggtgtg attcgccaaa acgggcgaca
     1981 gctggaatat ttaggaagtg gggctattcg aaccacggct gaagatctgc ctacccgctt
     2041 aaaacggatt tatgcaggcg tgagtgaaat catcactcaa tttcaaccaa atatgttcgc
     2101 catagagcag gtatttatgg caaaaaaccc tgattctgcc ttaaagctcg ggcaggctcg
     2161 aggaacagcg attgtagcag cggttaatca cgatttacct gtgtttgaat atgccgcccg
     2221 attagtcaaa caaaccgtta cgggaattgg ttctgctgat aaagtacaag tgcaagatat
     2281 ggtaacccgt atgcttaaac tctccgccaa accacaagcc gatgcggctg atgcattagc
     2341 cattgcgatt acccacgctc attcaatcca acattcactg attgttgcta agcaaagcca
     2401 gcagaatgtg agtagtgaga aagagcaaat tttagcacta atgaaaaccc gttatagccg
     2461 gggaaggttt aggttaaaag gctaactcaa tataaaatga ccgcttggaa ctaatgtttc
     2521 aagcggtcat tttttgagaa aattttacaa ttactcgcct tcaaaaggag ctgagaaacg
     2581 ttcaattctc gccccaatct gacgtaattt ttcttcgatg tgttcatagc cacggtctat
     2641 gtggtaaatt ctatccacaa tcgtttcacc cgttgcaata cagcctgcca acactaagct
     2701 gatggaagca cgcaagtcag ttgccattac ttctgctgat tttaactgct ctacaccata
     2761 gcaaattgca atattacctt caatttccgc tttggcaccc atacgaatca gctcaggaat
     2821 atgcataaaa cggttttcaa aaatcgtttc tgtaatacgg cttgtgcctt ctgcaactgt
     2881 atttaataag gtaaattgag cttgcatatc agttgggaaa cctgggtgtg gcatagtgcg
     2941 aatgttcact gctttcgggc gacgacctag agaatcaagc gtgatagtat tttccgtcac
     3001 atcaacctgc attccagctt cacgtaattt ttcgatcact gcatcaagag tgtctgcttt
     3061 ggtgttacgg caagtaattc gaccaccgga aatagccgct gccactaaaa atgtaccggt
     3121 ttcaatacga tccggcacta cgctgtgttc gcaaccgcct aaatgctcaa ccccttcaat
     3181 ggtaatcata tcggtacctg caccagaaat tttagctccc atcgcattta agaaatcggc
     3241 agtatctaca atttcaggct cacgagcagc attttcaata acagtagtac cttttgctag
     3301 agtacctgcc atcatcaccg ataaagttgc tcctacgctc actttatcca tatagattct
     3361 tgcaccgttt aaacgaccgt ttgaagttgc tttgacatag ccttcatcaa gctcgatttt
     3421 cgcccccatt ttttcaagac cggaaatgtg catatctacc ggtcttgccc cgatagtaca
     3481 accgcccggt aaagaaactt gcccaagttg gaaccgggca actaatggag ctaacgccca
     3541 aattgaagca cgcattgttt tcactaattc gtaaggtgca acgtaattat tgatcttact
     3601 cgcatcaata tgtaccacgc ctttatcgct acctttttca accgttaccc ctaattggcg
     3661 taagatttta aaagtggtgt ccacatcttt taaatcaggc acatttttta acgtaactgt
     3721 tttttcagcc aaaatagcgg caaataaaat agggagtgcg gcatttttcg cacctgaaat
     3781 atcgacagta ccatttaaag aaaatggacc atacacacga aatttttcca tttgggagat
     3841 cctaaaaaat aataatttgt aggggcgaaa aatttttcgc ccaattttcc aacgtttaca
     3901 aaagagtttg ggcgaatagt gattcgcccc tacatttcat ctatccaacc atatttagca
     3961 aacgctcagt tttccatttt tccacgctga atactttaat ggttaaagcg tgaatcgcat
     4021 tagtagtgaa atactcagct aaaggggcat aaacagcttg ctgttgtttt acttttgaaa
     4081 gagaagcaat gctgtcactt actacaataa cgccaaagtg ggcattctcg ccttgagcgt
     4141 ggacttctgt tgcatcagat aatgcttgtt ttaaaatttc ttcaatttgt gatggattca
     4201 ttctgacttc ctaaaatatg attggtaact cactcaaata ataaattgct caaaccaacc
     4261 gtctaaatcg tataatgcag ccaaagttct gacagaatct ggcgtattaa tcaaactgtt
     4321 tggtatgatt ttatggtaat gattcagtaa ttcagcaagt aaggtaaaac cggcagaatc
     4381 aatccgagtg atttctttta aatcccaata taggctttgt ttccctgttg gagataaaaa
     4441 agaagcacgt tgcttccata aagggagcaa cgtgttacga gttaattcgc ctgatagttt
     4501 cacaaaaaga ctttcgttat tttgctgaat gtcccattgt aatgtttttt gaggcataac
     4561 taaactactt attttaaagt gataggctgt tttgcagatt gtgccacttg tgcaattaag
     4621 gcatcaatcc ctttttgacg aatcacaccc gcccattcgt tttgcttggt tgcaaccata
     4681 cttactcctt cagcggccat atcgtatgct tgccattcac ctgttttgct gtttttacgc
     4741 catttaaaat ctaatttgat cggctgtgca gcacctttac ctgacacgtt tacacgaatg
     4801 cttacgatag atttaccatc caccgatttc gggctttcaa tttgcacact ttgatcttga
     4861 tactgggtta acacctgagc ataagactgc tcaacaaatt gaccaaaagc attaaagaat
     4921 gcctcttttt gtgcatcagt cgcagccgat aagtttttcc ctaacactaa ttggcctgca
     4981 tatttcacgt gaacgtgtgg cattaaatcg ttacgcacaa tggtacgcaa atattcaggg
     5041 tttgatttaa ttttcgcttg atttgcttta atatcgccaa ataatttatc tgcggtttgt
     5101 tgcattaata cataagggct agtttcagca aatgcggtgg ttgaaaataa tgcagaaact
     5161 gccactaagc ctgttacgat aattttttta atgtttttta acattattga tgctctccaa
     5221 aactctaaat tagaggttgt tgtacttaat tactctgctt ttggttcagc agaatcactt
     5281 gctttttcat cttcagtttt atctgacttt ttatcaccat ataagaactg accgattaaa
     5341 tcttctaaca ccattgcaga attggtatct acaaaagtat caccttcttt catcattgca
     5401 gtttcacctt cgattacgaa gccaacattt aacgcaacgt attgctcgcc taataagcct
     5461 gaggttttaa ttgagagcga gctggtatcg ggaatttgat taaaactttc atttaccgct
     5521 aatgccactt tcggggtgta ggttttgtta tcaagtgaaa tatcagccac tcggccaact
     5581 accacaccgc caactttaat aggcgcacga acctttagtc caccaatatt atcaaaagtt
     5641 gcatacaggg tgtaagtttt ctcatttgag aagccctgca catttgctac tcttaagcct
     5701 aaaaagacaa gagctgcaag cccaagtagt acaaataagc ctacccaaaa ttcatattta
     5761 attgattgac gcattgtctg ttcctttcaa aaaatcaacc gccgaacatt atcgcagtta
     5821 aaataaaatc caatcctaaa atcaccagtg aagcatttac caccgttctt gtggtcgctt
     5881 ggctgattcc ttctgaagtc ggtacgcaat cgtagccgtt aaataaggca atccagacca
     5941 ccgcaaaggc aaaaatcaca cttttaataa agccgttaat taaatcgctg gtatttaccg
     6001 agttttgcat taccgaccaa aaactgccac catcaacgcc tttccaatct accccgacta
     6061 atgagccgcc ccaaattccg atagcggtaa aaatagcagc taacaccggc attgaaatca
     6121 cgcctgccca aaagcgagga gcgatgatac gtctaagcgg atcaaccgcc atcatttcaa
     6181 gactggaaag ttgctctgtg gctttcatca gcccgatttc tgcggtcaat gccgaaccgg
     6241 ctcgccctgc aaataataat gcagtaacta caggaccaag ttctcgtaaa agcgagagtg
     6301 aaaccaaagt tcccaagcta ctttcggcgg caaaatcgac caataccaca tagccttgta
     6361 agcctaacac cattccgata aataagcccg acagcataat aattaagagc gattgcactc
     6421 ctaacacata aagctgttta atcagtaacg gggtatgttt tctaaattca ggtttaccga
     6481 ttaatgctcc ccataacata aaagcggaac gccctaatgt acggataaaa ttaatcacca
     6541 ccgccccgat agagctaata aaattaacca ttaaatagct cctccgtata atcttttgct
     6601 ggataatgga accgcaccgg accatcagct ttaccggcta agaattgtac cacttgcgga
     6661 tcttcgcttg cctgtaaaat ttccggtgta ccttcagcaa tcactcgttt atctgccaca
     6721 atataagcat aatcggcaat acttaatact tctttcacat cgtgagacac cacaatggag
     6781 gtcaaattca atgcctgatt taactcttta atcagctcga caatcacacc catactaatc
     6841 ggatcttgcc cggtaaacgg ctcatcatac ataatcagat ccggatctaa cgcaatcgct
     6901 cgagcaaggg cggcacgtct tgccataccg ccggaaagtt cggacggcat taaatttgcc
     6961 gcacctcgca acccaaccgc ctcgagcttc aataacacca atttgcgaat tagctcttcg
     7021 ggtaaacggg tatgctcccg aatcgggaaa gccacattat cgaaggtaga aatatcggta
     7081 aataacgccc ccgattgaaa caacatcccc attcgttggc gaatttcata caactctttg
     7141 ttattggctt tgcaaatatc tctgccatca aataaaattt cgcccgattc aggtaaaatc
     7201 tgcccaccga ttagcctcaa cagggtggtt ttaccaatcc cagaaggccc cataatggca
     7261 gtcactttac ctttctgcac ttgcagattc aggttatcgt aaatcactcg ctcccctcgc
     7321 ttgaaggtca agttttttac ttcaaccaaa ttttccgttt ttgtcatcaa ataggactca
     7381 aattaataaa agtgatattt atggtctatc aaatttgcca gaatgtcaaa aaacttttaa
     7441 taatctgaca aaaatctgcc tttacaagcg gtcagatttg ctaaattttt tgcaaaccgg
     7501 ctgaactgaa aaagaaaggt cttgtcttag ccaatacgag cgttttcact cgtagattat
     7561 aaaaacatag gatatgagga acattcacaa tatgaacaaa acaatgaaaa aatcattttt
     7621 aactgcattc attttaggct caaccattgc cgcaatgccg gcgtatgcag aagcaacatt
     7681 acccacagcc gtaaatgggc aagctgtgcc aagccttgca ccaatgctgg aaaaagttcg
     7741 cccggcggtg gtgagtattg cagtagaagg taaaaccaaa ggcgatagcc gccgcagtcg
     7801 tgaaattccg gaagaatttg aatttttctt cggtcctcac gccgatttat tcggcaaccg
     7861 ctcatcagct ccacgcaatt tccgtggcgt tggatcaggt gcagtcatca atgccgaaaa
     7921 aggttatgtg attaccaata accacgtgat cgacaatgcc gataaaatta ccgtaaaact
     7981 tgaagacgga cgtgaattta aagctaaatt agttggtgct gatccccttt cagatgtggc
     8041 gttaattcaa gttgaagatc caaaaaactt aactgaaatt aaattcgccg attccgataa
     8101 attacaagtg ggcgatttta cagttgcaat cggtaacccg tttggcttag gacaaactgt
     8161 tacttcaggc atcatctcgg cacttggtcg ttcaaccggt caatccgatg aaggctatga
     8221 aaactatatt caaaccgatg cggcagttaa ccaaggtaac tctggcggcc cgttaattaa
     8281 cttaaacggc gaattaatcg gaattaacac cgctattatt tctccaagtg gtggcaatgc
     8341 cggtatcgcc tttgcgattc caagtaatat ggcaaacagc ttggtgactc aaattattga
     8401 gtttggtgaa gtaaaacgtg gaatgttagg cattaaaggc ggtgaattga atgctgacct
     8461 tgctaaagag ttcaatattt ccacccaaca aggggcattt gtaagcgaag tcttaccgga
     8521 ttctgctgct gctaaagccg gctttaaagc aggtgatgtg attactgaaa tcaacggtca
     8581 aaaaatccgt agtttcagcg aattacgagc aaaagtagct acttcaggtg taggtaaaga
     8641 gattgaactt acttacctgc gtgacggcaa agaagccaaa gcaaaagtga ccttacaatc
     8701 ggattctgaa gccaaagtta ctgcttcaaa cctcattccg gcattaaaag gggcagattt
     8761 taacaactac aatgccaaag gcattaaagg ggttgaaatt tctaacgtag aaaaaggctc
     8821 gattgctgaa atgcgaagcc tcaaaaaagg cgatattatc atcggcgtga accgccactc
     8881 ggtagaaaac attgccgatt tacgcaaaat attagaaacc aagccatctg tggttgcact
     8941 caatattgtg cgtgacggtg caaatttcta tgtgattttg caataaacct tttgatccac
     9001 tcaaacaaaa gccgatgaca aaaatcatcg gcttttgtta ttgctgggaa tttaacatct
     9061 gtcgtgccat ttccatactt tggataatcg ctctgcggtt gatagaatca ttattgctat
     9121 ctaacacttt acgccaatta tcgagagctt gttgaaaatt gttatttaaa aagctgtcgg
     9181 aggctagcag gagtaaactg gcattttcat ttttatccaa ctgtagggct tgctcgataa
     9241 tggcttgaat ttcaacggtc attttctgcc cgttatcgta ataacgagcg gtggcaatcg
     9301 cccccaaaat agccgctcgt tttccgagta gcttctcggc attatcgtag caaaccagtg
     9361 ccgaatcaaa atcattgctt aacgcataag cctgccctag ttcgtaccat aaatcaccgt
     9421 tattcgggtt ttctcgaagc tggttttgca gactcaaaat atagcgttca tttttcgatg
     9481 tgccgtgtgc atcgctcatc tgttgttgaa aatcttgatg ttgttgcaaa cctgattgca
     9541 ccacttgata acgtccggaa agcccatagt aagtcattgc taacaacaaa atcgccacgc
     9601 aactcaggct tgcgatttta gcaagcggtc gattttgagc attattttgc aaaacgctct
     9661 gttcaaattg cgttcgttca aattggtaac gttgctctgc ctcacgctca aactcttgtc
     9721 tgacgtcatc tgcaaaatgt tgggcaaatt taaccgcttg ttggtagttt tcttggctta
     9781 attgctcacg cgttttcatt tttgttgcct ttatttttgc gagttcgcca caaaatagct
     9841 agaaataaca ggctaaacaa gccaaccggc aagccccata atacccatgt ctgtggcgtg
     9901 aatggtggat cgtaattcac aaaactgccg aaacgctcgg tcataatgcg gataatttcc
     9961 tcattacttt tcccttgatt caccatttca tacacttcaa ttcgcatatt gtaagccgcc
    10021 gtcgcattgg attcgaccaa attttggttc tgacattgca aacatcgcaa cgaacgagcc
    10081 agtgaaatcg cccgtacccg atccgcctca ttttgaaatt gaaaggtgtc caccatttca
    10141 gcttgaaccg tgccgacaaa tagcaacaag ccaaatacaa gcggtaatat tttgcggatt
    10201 ttttgcaaaa agccgatgga aattatgcta tttctcattt ctgagagcct ctaatttggg
    10261 taggaaatcc tgtgcaaaat cagggttgta acccttttgt tggtaacgca ctacaccgtg
    10321 tttatcaatc aaataactgg aaggtgcaga agagactttc agggtttgga tcaaaaagcc
    10381 tttttcgtaa tcatcaataa ttaaactaaa cggatttccc cagtttttca atgcgttgag
    10441 ggcatcattt gggcggtcgc tataagttaa gccgacaatc ggcacgcctt tttgttttag
    10501 ttccaacaaa atcgggaact ctttaatgca ccaagtacac cagctcaccc acacattgag
    10561 aatataaggc tctttcggca agctgttgtt atttaaatgc gcgttactat caagtaagtt
    10621 cttgcctaca aactctggaa acggcttgcc ctgccaatct tcagtgggag caagggcatc
    10681 tttattcatt aacggcacag tcaaaaagcc aacaataact acaagtaaca ggagcggaat
    10741 aagtaacagg atttttttca ttttttgttt tctctacgat aaccgaataa tgccaacagg
    10801 gcggccatta ccatcatcat accacctaac cataaggctt gcacataagg cttatagtgc
    10861 aaacggaagg catattctaa attgccgaac ttatccccca tcacaatata aatatcgtct
    10921 aaattgtggt ggaaaagccc tacttctgcc attgtcatcg ttcttacatc ataatagcgt
    10981 ctttccggtg tgacggttgc cagcaactgt tcatctcggc tgatagaaaa aacggcttgc
    11041 tcggcggtgt agttcggacc gatgagatcg tgataatctt catatttaaa ggtataaccg
    11101 gcaagttccg ctgcttgatt cggctttaac cgcacgccga tttcatcgcc gtaataactg
    11161 ttcatcattg ccccaatcac gcaaaccgca aagccgatat gggctaaccg catcgcaagc
    11221 ggtcgaattt gccacatttt ttgcgaatag ggcaaatgag tgagaataat ccagatcgca
    11281 aggctgataa atatggtggg taacggctgc aaagcaaaat gctctctttg cgagatggag
    11341 gcataaatca accctaacgc taaaccgact gcaatcggca gcaaccaaag ttttaccaat
    11401 atctgcttat ttgaaatctg tttccagccc agcaccaccg caaagcccat tactatcatt
    11461 aacagtaacg ctagtggcgt gaatacgcta ttgaaatagg gggcccccac tgaaatcgat
    11521 ccccaattca tcactgtgaa gatcatcggg tagaaagtcc ccagcaatac cacagaagca
    11581 gccacactaa ataagccgtt aatcaataaa aatgccgttt ctttagaaag taagttgaaa
    11641 cgcactttgc cttgccagag attcgctcgg aatgcaaaca gagcaagggc aatgaaactt
    11701 aagccgaaga ataagatcag cagtgccatt cctctgtcgg gatcgaccgc aaaggcatga
    11761 accgaggtca gtacacccga acgaacaata aacgtgccta ataggcttaa agcaaaggcg
    11821 aaaatggcaa gtagaatcgt ccaataatag aaaatgccac gctgttggct cacaattaaa
    11881 ctatgcacca atgcggtgcc aagtagccaa ggcattaggg aggcattttc caccggatcc
    11941 caaaaccacc agccacccca gccgagttcg taatatgccc accacgcccc taaaataatg
    12001 ccggcggtga gaaatcccca cgaaatcatc gtccacggac gaagccaacg cataatcgca
    12061 gcgtccattc cgcctgaaac gagggcggcg acaatcattg caaagctcac cgcaaagccg
    12121 acatagccca agtagagcaa aggcgggtga aagatgagcc caatatcttg caacattggg
    12181 ttgagatctc gcccttcagg tggtggtgga aagccacgtt caaatgggct ggaaaccaat
    12241 agaatgaaaa gtagaaaacc tagtgcaatt agccctaaca tcgctaaggt tcggttggca
    12301 aacaagcggt caattttttg cgaaaatttg caaaataccg cagaccaaat cacaagagcg
    12361 gtgagccaaa acagcattga gccttcgtgt ccgccccaag tggcggcaaa tttaaaaaaa
    12421 tcggggagct ggctgttgga atgagcggca acgtagataa ccgaaaaatc atcggttaga
    12481 aaagcataag ctaaggtaga aaaggaaaat gtggtaaaag cagcttgcaa ataagtgaaa
    12541 agcggagcca atgccagcca atgatattgc ttgcgaactt cgcctagaag tgcaaaacca
    12601 acttgaaaaa tggcactaat tgcagccaat aaaagtgaaa aatagccgag ttccggtagc
    12661 ataaaaaatc caaaaaatga ccgcttgtga atgtaaaaaa agccctctcc acttgtggga
    12721 gagggacaga tttttcttcg ttcagaagaa aaatcaggga gaggggaatt aaataatttt
    12781 gctaaaaata acaatactcc ctctctctga aaaatatttc tgaacgaaat atttttcggt
    12841 ctcaatactc gctacgctcg ctccttcgga gccgttggca aagccaacgt tcaaatgtaa
    12901 acatttgtcc cacaagggga gagagtatat cctaacttgc aaccgttagt tgccctgcat
    12961 aaaggataaa gtaacgcaag cagagtacac cgattaagtc gaaaacggaa attaagataa
    13021 taaatttcac gttatgtttc aagcggtggc taccaaaaat attggcaaca agcggaatcg
    13081 caataccgat taacattacg cctatccaga acacattccc ccagaagccg ttaagtgcat
    13141 gggttaaagc gagcgattta tctgctccac cgaagtgtaa gcccacaaag aacgctacaa
    13201 ttaagcctaa ttcggttacc ataatcggca cttcaaattt gtgcataaag tggacttcgt
    13261 ggctttcacc ggataacttg cctgcgagta aaatcactag gaaagttgct gcaatacctg
    13321 acgatgcccc tgatgccaag aacaatgccg gtaacacagg gttattcagc attggataac
    13381 tcactaacgc cgagagtaag aaaccggtgt aagcaccaag tacagcagcc aatacgaata
    13441 agataaattc aattggtttt aacagcttcg cttcggcaaa atcgatcaaa ccagagacca
    13501 caggtagata ccgaacaatc caatctttaa acattatggc gatccaaacc accaatactg
    13561 ccatataaag ttggaataac attaccccca tcgacattac tgaggtaaag ttatagttga
    13621 acattaattt ccagaatgtc caaggtttgg ttaagtggaa aatcagtaac agtaagccga
    13681 taatggttgg taatgtgcca agaatagccg cactacgaat aatccagttt tggcttggtt
    13741 tttccatttt gacaccgcta ttacggtaag caatcgctaa ctgaaccgca cctgatgaaa
    13801 taccaagtag gaataagtaa atagcgatag tgccatccca aacaaggttt ggggtttgga
    13861 aaggtacata ttcattcatt atctatgttc tcctttacca aatggaatgt gatataaatt
    13921 cggctccgtg cctaatgccg ttttggtgcg ataaaccgga ttatttttca ctttatggaa
    13981 aatatcgcta cttggatcat tcatatcacc aaaggttaaa gctttagtcg gacaagcctc
    14041 tacacaagca ggctgtttgc cttctgcaag attggtatct cggcaaaagt tacatttatc
    14101 cgccgatttt ttctcagggt gaataaaacg tacacgatac gggcaaaccg caatacagta
    14161 ttggcaaccg acacacaaat ctgagtgtac atcaataatc ccggtttcag gatcgataaa
    14221 tgaagcaccg gtcgggcaaa cactcacaca aggtgcattg gtacagtgtt ggcaagattg
    14281 gcggaaaaac tcatattgta cgttcggaaa ctcaccgaaa ggctcactac ggataatttc
    14341 taaacgagaa accccttccg gcactttgtt ggtggtgcga caagcgtcca tacaagccgt
    14401 acagccgata caggcagttt catcatgaac catcgcatag cggattttct tttgttcttt
    14461 ctcagtagca agagttatgg aggtggcaag ccctgtactt gccacaactg cgatagcacc
    14521 tgcccctgag acgaaatctc tacgggtgca agtcattatt ttgttccttt tgcttctgtg
    14581 gctttcattt caggattttt aaattcgcct gaatgaattt tggtatgaca atccgtacaa
    14641 agtttaatgc gatctttttc aggaatgtct ttcatcggat ctttttccgg gtgaatttca
    14701 tgacagttgg tacaagcaat tttagttgcg tgcgtgtcgt gagcccagaa tttttcacgc
    14761 aatttctctg ccgtatggca agcaaaacag acttgatttt gctcatttac cgaacgttca
    14821 agtgatgggt tacttgcttt accgtgtggg ttaaaacgca ttacgtcttt tgcccctttg
    14881 cggtggcttt cagaaatatt accgtggcaa cttatacaag tgagtggctc tccattattc
    14941 gggcttttca catctttttg gaaatgtttg cctgcgtgat ggaaaggctt acctgttgcg
    15001 tttgccgatt cgtgacattg agtacaatat ttatttggat cacggcgtgc atcttgagct
    15061 acttttgcat catcagccgt ttctgattgc caaagaggtt ttggctgctc aggcattaac
    15121 gcattcgcac tggaaattgc aaaaaaacct gcaaatacga ccgcttgtat gagggcgact
    15181 gctcgtcctg cttttgagat taattttttc atagttcacc tcaagctaca ttattttgct
    15241 tctgcttttg gtgctgctac cggtttgtct gcttcttctg cgggtaataa acctttagca
    15301 cgagcttctt tttcccattg aggaaccaca gtttttaaga actcatcttt tgctgcttgc
    15361 tctttaggaa tatctaaacc aatagcaagt tgtgctttct ctttagttga gatgtccgga
    15421 atcgccactg gcgttgttac accgtgtttc gctaacacta cacctaattt agcacgggca
    15481 tctgctgcac ggtcgatacc tgttgcgatg gtacgtaaca ttacatcagg tgcgtggaag
    15541 tggttaccgt gacctgccgc agagtaatcc caacgccatt gagcgtgacg aattgccatt
    15601 aagatctctt tcatctcttc ttgagttgct ccagcttccc aagcagcttt cgcttcaaag
    15661 tgagctttca ctaattgatc ttctaagcga atcattgcct cttttacttc gtgtttatac
    15721 tcttttacac gtttttccaa tgtttctttg ctttgttcat gacaagtttt acaagtcgct
    15781 tcaaattggt caaacggatt accgattttg tggtcagtat aaactttgcc gtctttgtct
    15841 ttcacttttg gcatatggca atcaatacag gttacaccat ttttcccatg tgtaccttgt
    15901 gaccaaactt caaaatctgg gtgctgcgtt tttagcatcg gagctttcga taaagcatga
    15961 gtccagtctg taaaattgat ttcatcgtag tatttttcaa tgctatctac atctacacct
    16021 ttatcccaag ggaaagttac atctgtttta tttttgaaat agtactccac atggcagtta
    16081 gcgcacacag cagggcgttt accatgttta tctaaatcct caaacttcca accaaccgta
    16141 ttcaatgcac gtaatacgtg aggacgtgca acacgtagtg caggtttacc ttgtttaaac
    16201 tcttctgatg tcgtgtcatg gcagtctgca caacctattg agtttacaat ttcagcacca
    16261 tatttcgccc atttaggatc aaaatatcct cgctcacctt tctcctcaat taagcgtgga
    16321 acatcagggc ctttacatgt ccaacaagcc ataggttgtg gaccatcatt ttcatcttta
    16381 ggcgcgccgg tgcgcaaaat atcacgcaca tcggtaactg cataaaagtg acctcgtggt
    16441 ttattataat ctttcgcaaa agcatagcct gcccacaaaa taacataacg agggtcagcc
    16501 tctaacgcac ttcctcgatc tgtggatttt gcagttgact tccaagaatc gtattgtagc
    16561 ggatattttt ctgcaaatag gtggtttgca gactcaattt tcacgcctaa tttttcatgc
    16621 ttaactgctt tatctgttaa tgattcagtt ttcgcctctt cagctaaagc agtttgtaaa
    16681 caccccaata ttgaaattgt tgccacagct aggcttttta ttaaaaattt cattttggct
    16741 ctcccaatca ggtaaaaata attagagaaa aataagaa
//
LOCUS       DANMBQ010000044        16477 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.044, whole genome shotgun sequence.
ACCESSION   DANMBQ010000044 DANMBQ010000000
VERSION     DANMBQ010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16477
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.044"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..519)
                     /locus_tag="PXE92_001215"
     CDS             complement(<1..519)
                     /locus_tag="PXE92_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5760471.1"
                     /translation="MLDSLKEVNQKLDKKADKVGGGTKEDALVTLDTLIASGTVKAET
                     AMSLLPTLQKGAVATGASSEDMAKIAISSMQQFGIKEEDIGRALDMAVAAGQAGSFEL
                     AYMASWLPQQMAAAKQAGLSSIEGFERLLIANQQARVTAGTSDEAGNNLVNLLGKITA
                     KETNERFKNIEYK"
     gene            618..869
                     /locus_tag="PXE92_001216"
     CDS             618..869
                     /locus_tag="PXE92_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5760472.1"
                     /translation="MAPTISDGDQMLVDFSKKEARGDDKIYLVQNGESVWVKRVRKVW
                     DYVELISDNESYRPIRITADEAQNLQIIGQVVHIGHSLV"
     gene            complement(1065..1265)
                     /locus_tag="PXE92_001217"
     CDS             complement(1065..1265)
                     /locus_tag="PXE92_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL5760473.1"
                     /translation="MQYVLDLTGYACPLPLLMAKKAMNDLKKGDSLEILLNQQSSLTD
                     FELLAKEQGWLCELQAVENVGY"
     gene            complement(1324..1836)
                     /locus_tag="PXE92_001218"
     CDS             complement(1324..1836)
                     /locus_tag="PXE92_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HDL5760474.1"
                     /translation="MQQLEPQTFASWAEPIDMLYACHSKVKSFCKQLQILPDYLEKNG
                     VNQAVKNDVQQILNYFNISAPLHHEDEEDDFFPELIKVQPQAQAEVDELERQHVHLHK
                     NWDYLSAQLEDLLAGKRENVDRDLIERFVAGYDVHIAIEEPLFELGREHLAQDKLSAM
                     GKVMADRRKL"
     gene            complement(1849..3003)
                     /gene="tgt"
                     /locus_tag="PXE92_001219"
     CDS             complement(1849..3003)
                     /gene="tgt"
                     /locus_tag="PXE92_001219"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDL5760475.1"
                     /translation="MKYELKTTSGNARRGRLTFNRPKGEFHVETPAFMPVGTYGTVKG
                     MTPEEVKATGAQILLGNTFHLWLRPGQEVMKMHGDLHDFMQWHGPILTDSGGFQVFSL
                     GKLRKIKEEGVTFQNPISGEKIFLSPEKSMEIQYDLGSDIVMIFDECTPYPATFDYAK
                     KSMEMSLRWAKRSRDRFDELENPNALFGIIQGGIYEELRKVSVEKLVEIGFDGYAVGG
                     LAVGEPKEDMHRILEYVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNA
                     RNGHLFVTNGIVKIRNAKYRADTTPLDPECDCYTCKNYTKAYLYHLDKCGEILGARLN
                     TIHNLRYYQRLMAEIRQAIEEDRFDDFVVEFYARIGKEVPPLQSEVKEQK"
     gene            complement(3062..3202)
                     /locus_tag="PXE92_001220"
     CDS             complement(3062..3202)
                     /locus_tag="PXE92_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760476.1"
                     /translation="MKKLLLCVGILVLAACSSTGVGGSIGAGGGSNGVGIGLGVGTDF
                     RF"
     gene            3296..3868
                     /locus_tag="PXE92_001221"
     CDS             3296..3868
                     /locus_tag="PXE92_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1439 domain-containing protein"
                     /protein_id="HDL5760477.1"
                     /translation="MKILRKFAAVCVVSMAMLSANANLLTISEQEINDYLATKLAEKI
                     PLKDKVGIPKLFELDYRLHSLTSQIGRTEEKKVAISGVVDGLLNAKGKKYAASIHLNM
                     DTTPYYDPQKGALFLKDVRLLSWSATPAKYQAELQMFLPVLADGLSSFLNSTPVYTLD
                     ENKTKEAMVKKFGKAIVVENGNIKLETTIF"
     gene            3970..4188
                     /gene="cspD"
                     /locus_tag="PXE92_001222"
     CDS             3970..4188
                     /gene="cspD"
                     /locus_tag="PXE92_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein CspD"
                     /protein_id="HDL5760478.1"
                     /translation="MDIGIVKWFNNVKGFGFITSDVCEGDIFAHFSEIQAEGYRSLKV
                     GQKVQFELVQGERGASASNITPISEKTL"
     gene            4278..5192
                     /locus_tag="PXE92_001223"
     CDS             4278..5192
                     /locus_tag="PXE92_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5760479.1"
                     /translation="MPSSYQLVLINLLYIFGIGLNIVLLRFLSLHFDPLNNNGIRFLV
                     GGFTLLFFILWRFRTSLSQLIKTPKLIAISLFVGLMMSANMYFWLKGVKITNAVTVSI
                     FGVLAMPFGVIIAAIFFQDERERIKSKAFWFGSILTIIGSLGFIWHGKTLSIGEGFIL
                     GSVFLFLSIIIRNIQNLVVKFARELNVLTLSCVTSLTTSLSSLLLSQQAGKFNELFTA
                     PNWLLFSLMVAGIYAIMIGMVLTFHIIQTQGLITYQVLELLMPVSTAIIAYILLDERI
                     SIVQMGFACIVILGSSIALKLVKYPKHY"
     gene            5311..6171
                     /gene="araC"
                     /locus_tag="PXE92_001224"
     CDS             5311..6171
                     /gene="araC"
                     /locus_tag="PXE92_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HDL5760480.1"
                     /translation="MYKNLSLLSPTYPFDLEFIAGLTQCEKGNYLDSIVDRQQGMHGY
                     MLQLTTFGRGSVFDGKHVFTAHRGQLLLFTPNAVQHYHRHPESQYWHYKWVYFQPNPK
                     WNKWLNWSDMEEKIGRITISDDRYFQEISQLFSKIELELKSSKFFKEDIATSLLEYLL
                     MKCISAEKIEVIPVIDQRILTVCDLILTNLAKNESLEAMAEKVFLSPSRLSHLFKQSL
                     GISLVQWRELQRISESKKLLYFSNISISNIAKSLGYEDSLYFSKIFKKHTGLSPSEFR
                     TLERRKDSEM"
     gene            6358..7332
                     /locus_tag="PXE92_001225"
     CDS             6358..7332
                     /locus_tag="PXE92_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5760481.1"
                     /translation="MKKPTFKHALFSSILALACYGSAFANDVVNISKIDGMPWFNRMA
                     EGVVQAGKDNNINAYQVGPSNTDAPQQVKLIEDLIAKKVSAISIVPNDANALEPVLKK
                     AKQNGIVVLTNESVGQPSADWDIEIIDNAQFAADYVEEVAKAMGGKGGYVIYVGGLTV
                     PQHNLWADLFVKYQKEHYPDMFEVTSRMPVAENINDARRTTIDLVKAHSDLKAVVSFG
                     SQGPIGAGLAVKEKRLKNKLNVFGMMIPSQAANLIKSGDITMGITYDPANAGYALAAV
                     AAKVLKGEKIEDGLEIPTVGKAKVDSEKKLLQFHNVLKVTKENIDKLY"
     gene            7387..8877
                     /locus_tag="PXE92_001226"
     CDS             7387..8877
                     /locus_tag="PXE92_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5760482.1"
                     /translation="MAFISMRHISKTFHGIKALNQVNLSLDYGEALCLAGQNGCGKST
                     LIKILSGVYQPDKGAEIQIGATQYTKLTPQESIDKGIQVIYQDLALFPNLTVAENIAI
                     NLHRKFGWVSQDHIHQVALTAIQSINANLDLNAILEDLPIAQQQLVAICRALAQNARL
                     LIMDEPTASLTAKEVKDLLDVVIKLKSKGISIIFVSHKLQEVMSVSDSVLVLKDGNMV
                     GQYPIREMNEKRLGFLMTGLEIDYKRLDLPDFLQRKTVLEVRNLTLPHQYQEINFSLR
                     EGEIVALTGLLGSGRTELCLSLFGITQPQSGDILLNGEKVIFNTNRDAIAKGIAYVSE
                     DRMHTGLIMAESIHHNIISTIFHKITDKLQIIQSSKAYASSQALIDSLKIKVSDSDLP
                     VNTLSGGNAQRVSIAKWLAIDPKIIILDAPTIGVDIANKEGIFQIIKSLAQQGIAVIF
                     VTDEVEETYYNSHRVIVMKKGRIVDEILPAYSSEKSIAEVIYENQQ"
     gene            8861..9820
                     /locus_tag="PXE92_001227"
     CDS             8861..9820
                     /locus_tag="PXE92_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5760483.1"
                     /translation="MKISNNHILSSTLLILILLLTLFTRDFATIENLYDVVNNYAMLM
                     ILACGLFVVLLSGGIDISFPAITIISQYVMVTLIGKYDVGFAGVFVISSTIGILLGFI
                     NALFVNRLSVPSIIITISTLNIFYGGLLYFTKGVWLYEYPEWFTQEIVFFKQITAEGV
                     EFGLSFQALMAILAVILTGLITNKLTIGRKIYALGGNPDATSRIGFNLLFLHLFAYGY
                     MGFMAGLAGIVQSYTVQSVAPDSLLGYELTVLAAVVLGGASLSGGRGTLLGTVMGVML
                     LAIIQNGLNLMNVSSYWQTIITGIIIILSISATALSQRKKQGA"
     gene            9823..10773
                     /locus_tag="PXE92_001228"
     CDS             9823..10773
                     /locus_tag="PXE92_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5760484.1"
                     /translation="MKSKLDPTIFYLLALFAVAVIAFSIFIPDIFWSVSNFQSMASQI
                     PVLGILTLAMALPMLTGGINLSIIAGMNACSLIIAYFITQYTGISWLFIAILLSLCCA
                     LAIGLLNGTLIAIIRVSPILATLGTMTLINGINILVTNGSTIANFPETMLSINASAFL
                     WIPLPILIFLFLAGLIWFFLEKTAMGKAVYFIGNNEKATYYSGINTKKVLIWVYVISS
                     ILCVFAAILMMSKLNSAKASYGDSYLLISILAAVLGGINPDGGKGKLLGIMLALVLLQ
                     VIESGLNMLGISSYITMILWGSLLLFFIFLQKNRLFRLTQ"
     gene            10786..12381
                     /locus_tag="PXE92_001229"
     CDS             10786..12381
                     /locus_tag="PXE92_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HDL5760485.1"
                     /translation="MQNEKQLIEQGNTVIGIELGSTRIKAVLISSDGTILATGGADWE
                     NRLIDGIWTYHQNEIWEKLQAAYMDLSKTVKEKYHTTIRTAKALGISAMMHGYLPFDK
                     HGNPLVAFRTWRNNITLTSSEKLTALFQYPIPQRWSIAHLHQALLNQEPHLPEIDYLT
                     TLSGYVHWQLTDHKVLGIGDASGMFPIDTELKSYNPTMLAQFDRAIADYRMPWKLEAI
                     LPQVRVAGEQAGKLTEKGAKLLDPTDNLQAGIPLCPPEGDAGTGMIATNCIKEKTGNI
                     SAGTSAFAMIVLEKALSKAYSELDIVTTPAGKLVAMAHANNCTSDINAWVNLFGECLS
                     VFGVNICTEELYEMLFLHALQGDADCGGLLSYGFHSGEHNVGLSEGCPVFLHPTNAHF
                     NLANFMRTHLYTAFGAMKLGMDILINQEKVEISRILGHGGIFKTEGVAQKILSSALNI
                     PLATASTASNGGAWGIALLADFLSVSDRYSLEEYLDNCIFNTTKLNLVQPDKTMSEGY
                     ERFMQRYKQGIPVVEKALFLNTD"
     gene            12611..13813
                     /gene="yedE"
                     /locus_tag="PXE92_001230"
                     /pseudo
     CDS             12611..13813
                     /gene="yedE"
                     /locus_tag="PXE92_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005824242.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
     gene            13849..14118
                     /gene="yedF"
                     /locus_tag="PXE92_001231"
     CDS             13849..14118
                     /gene="yedF"
                     /locus_tag="PXE92_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007241376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDL5760486.1"
                     /translation="MAFTVVQKLDKDPKDITPDYTLDTLGEPCPYPAITMLETMPQLQ
                     KGEILELLSDCSQSINNIPIDTKNHGYTLLSVEQNGTKLRYLIQR"
     gene            14218..14562
                     /locus_tag="PXE92_001232"
     CDS             14218..14562
                     /locus_tag="PXE92_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HDL5760487.1"
                     /translation="MNKYALLAIFWFIIGIYALLFRESTNDIPPFPHFDKVSHFALFF
                     IQIWLSANAFIRSKKGIPYFGLIIFALLYAFTSEWAQATFTSTREGSWLDGLADMLGA
                     SLSLLLVKYCKK"
     gene            complement(14625..15572)
                     /locus_tag="PXE92_001233"
     CDS             complement(14625..15572)
                     /locus_tag="PXE92_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDL5760488.1"
                     /translation="MNRITQILNIKHPIVQAPMSWLTDAHLVASVAEAGGLGFLAPHA
                     GQTTNPTSNEEVLDRMRNEIRKVKALTDKPFGVPFILSYDFSLIPLMVDLFIEERVPV
                     VLDNGWLDPEIYAKFKAAGIKIICRLPNPNLADALKAQALGADILVLTGFDEGGTLPM
                     KEVGSFNVLAEFVGKVDLPIMLAGGIADKKAVQAALTLGAEGVWIGTAFIATEECRAS
                     EKVKNWIVEANANDLLLFRTEPHYYRSLPTGLAKKCFEMSENGATRSEIAKVMNAGTG
                     MRLGMLEGDFDNGYVSVGNGISQINKIKSVKELIDELMA"
     gene            15755..>16477
                     /locus_tag="PXE92_001234"
     CDS             15755..>16477
                     /locus_tag="PXE92_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760489.1"
                     /translation="MSIRWENIKPLQGSQNSAFEELVCQLARQEFKSQGKFTRISAPD
                     GGIEAMCELPDGSVCGWQAKYFLSSFSSSQWQQIEDSFKESLKNYPKLTKYYVCVATD
                     RANANVSGKKSFLTKWEEYTQRWKDFAQSQGREIEFEFWGSFELSDLLSKPENAGKKF
                     FWFNESELSDKWFEQYNQQAINNLGVRYTPEINVDLPIAMQLESLARTQIFKKHLSDE
                     FHKLLVEIKSQYKSLYRYEALEN"
BASE COUNT         4841 a         3321 c         3193 g         5122 t
ORIGIN      
        1 tttatattca atatttttaa aacgctcatt tgtttcttta gctgtaatct taccaagcag
       61 atttaccaga ttattacctg cctcatcgct tgtaccggca gtgacacgag cctgttggtt
      121 tgcaattaaa agtcgctcaa agccctcaat actactcaaa ccggcttgtt ttgcagctgc
      181 catttgttga ggcaaccaac ttgccatata tgcaagctca aaactacctg cttgcccggc
      241 tgcaacagcc atatccaatg cccgcccaat atcctcttct ttgatgccaa attgttgcat
      301 agaggagatc gcaatttttg ccatatcctc cgagcttgcc cctgttgcca ccgccccttt
      361 ctgcaaagta ggtaatagac tcattgcggt ttcggctttg actgtaccgg aggcaatgag
      421 cgtatcaagc gtaactaacg catcctcttt tgtgccaccc ccaaccttat ccgccttttt
      481 atcaagtttt tggtttactt ctttgagcga gtctaaaata tcgtccagct tttccttaag
      541 agccttattc agacagccta ttaagcctag gcgtaaaagc ccataattgt ggcgtatttt
      601 gggctaatgg cacatcaatg gccccgacta tcagcgatgg tgatcaaatg ttagtggatt
      661 tcagcaaaaa agaagcccgt ggagacgata agatttatct tgtgcaaaat ggtgaaagcg
      721 tttgggtaaa acgtgtaaga aaagtgtggg actacgttga attgattagc gataatgagt
      781 cctaccgccc aatccgaatt acagcagacg aagctcaaaa cttacaaatc atcgggcagg
      841 tagtccacat cggacactct ttagtttaaa acagatttaa aatagtttta aaaccgatca
      901 aacctatgca aaaaatatcg caaaaactgc ccattttttt ctaatcctgc tcattttgtt
      961 ttttgcatag ccccaaccaa acaataacgg cgaacccttg tattcacggg gctcgccgtt
     1021 atttttccgc ccaaattttt ttctttctct ctatgcaaaa aagatcagta ccccacattt
     1081 tcaaccgctt gtagctcaca aagccaacct tgctctttgg caagcagttc aaaatcggta
     1141 aggctactct gctgattgag taaaatttcc aagctatcgc cctttttaag atcgttcatc
     1201 gctttttttg ccattaataa cggcaagggg caggcatagc cggttaaatc taaaacatat
     1261 tgcatagcga aatagggaat aaagaaaaag ggcgaatatt gaaattcgcc caatcacaaa
     1321 agattagagt ttacggcggt ctgccatcac tttgcccata gccgataatt tgtcttgagc
     1381 taaatgctct cgcccaagct caaagagtgg ctcttcaatc gcaatatgca catcataacc
     1441 tgccacaaaa cgctcaatta agtctctatc cacattttca cgtttacctg cgagcagatc
     1501 ttcaagctgt gccgacaaat agtcccaatt tttatgtaaa tgaacgtgct ggcgttccag
     1561 ttcgtctacc tctgcttgag cttgtggttg caccttaata agctcaggga agaaatcatc
     1621 ttcttcatct tcgtgatgta aaggggcaga aatgttgaag tagttcaaaa tctgctgcac
     1681 gtcattcttc actgcttggt ttaccccgtt tttctcaagg taatccggca aaatttgcaa
     1741 ctgtttacag aaacttttta ctttgctgtg gcaagcataa agcatatcaa tcggctctgc
     1801 ccagcttgca aaggtttgtg gttcaagttg ttgcatatac actccttgtt atttctgttc
     1861 ttttacttca gattgtaaag gtggcacttc tttgccaatt cgggcataaa attccactac
     1921 aaaatcatca aaacgatctt cttcgatggc ctggcgaatt tctgccatta ggcgttgata
     1981 gtagcgtaaa ttatgaatgg tgtttagtct tgcccctaaa atctcgccac atttgtctaa
     2041 gtgatataaa taggctttgg tgtagttttt gcaagtgtaa caatcacatt caggatcaag
     2101 cggtgtggtg tctgcacgat atttcgcatt acgaattttt acaatgccgt tggtcacaaa
     2161 taaatgtccg ttacgggcat tgcgggttgg cattacgcag tcaaacatat caataccacg
     2221 gcgaacccct tcgactaaat cttctggctt gcctacaccc attaaatagc gtggtttatc
     2281 tgccggaatt tgcgggcaaa cgtattctaa aatgcggtgc atatcttctt taggttcacc
     2341 taccgccaag ccaccgactg catagccatc aaagccgatt tcaactaatt tttccaccga
     2401 gactttgcga agttcttcat aaataccacc ttgaataatg ccaaataacg cattcgggtt
     2461 ttcaagttca tcaaagcgat cacgagaacg tttcgcccaa cgtagtgaca tttccatcga
     2521 tttttttgca taatcaaagg ttgccggata aggagtacat tcatcaaaaa tcattacaat
     2581 gtctgatcca agatcgtatt ggatctccat tgatttttcc ggcgaaagga aaattttctc
     2641 accgctaatc gggttttgga aagttacgcc ttcttcttta attttacgca gtttacctaa
     2701 gctaaaaact tggaaaccgc cggagtcggt taaaataggg ccgtgccatt gcataaaatc
     2761 gtgcaagtca ccgtgcatct tcatcacttc ttgccccggt cttaaccata aatggaaagt
     2821 gttgcctaat aaaatttgcg cccctgtcgc tttaacttct tcaggagtca ttccttttac
     2881 cgtgccataa gtgccaacag gcataaatgc cggtgtttca acgtgaaatt cgcctttcgg
     2941 gcggttaaaa gttaaacgcc cacgacgagc gttaccactt gttgttttta attcgtactt
     3001 cattttaatc cacaaataaa cagttcgtga aagcggtcaa aaaccaccaa aaatttacca
     3061 attagaatcg aaagtcggtg ccgaccccta agccgattcc aacgccgtta gagccaccac
     3121 cggctccaat actgccaccc acaccggttg atgagcaagc agctaacact aaaatgccaa
     3181 cgcataataa gagttttttc attttttgct gtcctaaacg aaaaagagag tctatgatag
     3241 acccaatgta ttctaacctg tttaatggat taaacctaat tttaaagggt aaattatgaa
     3301 aattttacgt aaattcgctg ctgtatgcgt tgtctcaatg gctatgctct ctgctaacgc
     3361 taatttgctc actattagcg agcaggaaat caacgactat ttagccacca aattagctga
     3421 aaaaattcct ttaaaagata aagtcggtat tcctaaatta tttgaattgg attatcgcct
     3481 gcattcactt accagccaaa ttggcagaac cgaggaaaaa aaagtagcta tttctggcgt
     3541 tgttgatgga cttttaaacg caaaaggcaa gaaatatgct gcctctatcc atttaaatat
     3601 ggataccacg ccttattatg atccacaaaa aggggcatta tttcttaaag atgtcagatt
     3661 gttaagttgg tctgcaacac cggctaaata tcaagcagag ctgcaaatgt ttttgccggt
     3721 gttggctgat ggattaagta gttttttaaa cagtacgcct gtttatactt tagatgaaaa
     3781 taaaacaaaa gaagcaatgg tgaaaaagtt cggcaaagcc attgtagtag aaaatggtaa
     3841 tatcaagcta gaaaccacta ttttttaaat aattttgtga tcttcgtcta atttttacac
     3901 tttgatagtt gagcttttac gcgttttatt tacaatccaa atatcgccat tcattatttg
     3961 gagagttcta tggatatcgg tattgttaaa tggtttaaca atgtaaaagg atttggtttt
     4021 attacatcgg atgtatgtga aggagacatt tttgctcatt tttctgaaat tcaagcagaa
     4081 ggttatcgct ctttaaaagt cggccaaaaa gtacagtttg aattagttca aggagagcga
     4141 ggtgcctcag cctcaaatat cacgcctata agcgaaaaaa cgttataatc cgtcgttaat
     4201 aaaattattg ttataaccat actttattag attttaaagc tcagctttta cagctgagcc
     4261 atttttgctt tttgaatatg ccttcctctt atcaattagt cttaattaac ctactttata
     4321 tcttcggtat tggtctaaat attgtactgc ttaggtttct cagtttgcat tttgacccat
     4381 taaataataa cggtatacgt tttcttgttg gtgggttcac cttattattt ttcattttat
     4441 ggagattccg cacatcgctg tctcagctga ttaaaactcc aaaattgatt gcgatttctc
     4501 tatttgtcgg gttaatgatg tccgcaaata tgtatttttg gctaaaaggg gtcaaaatta
     4561 caaatgctgt taccgtctct atttttgggg tattagctat gccatttggt gtgattattg
     4621 ccgccatatt ctttcaagat gaaagagaac gcattaaaag caaagctttc tggttcggct
     4681 caattttaac gatcatcggt tcactcggat ttatttggca cgggaaaaca ctctcgattg
     4741 gcgaaggatt tattcttggt tctgtgttct tatttttgtc gatcattatc cgtaatatac
     4801 aaaacctagt tgtaaaattt gctcgagaac tgaacgtatt aaccctaagt tgtgtaacat
     4861 ctttaactac ttcactctcg agtctattac ttagccaaca agcaggtaaa tttaatgagc
     4921 tttttactgc accaaactgg ctactattct ctctgatggt tgctggtatt tatgcgatta
     4981 tgatcggaat ggtattaacc tttcacatta tccaaaccca aggactgata acctaccaag
     5041 tattggaact attaatgccg gtttcaacag ccatcattgc ttatatttta ctggacgaac
     5101 gtatttccat tgttcaaatg ggctttgctt gtattgtgat tttaggctca agtatcgcct
     5161 taaagttagt aaaatatcct aagcactatt aggatctttg ctaattaata ttggtaaaat
     5221 tacatttggt ttactaatct gagcgttcat tcattagtaa tgataaacaa gcggttattt
     5281 tttgttattt tttggtaaat actgatagtc atgtataaaa acctttcttt gctttcaccg
     5341 acttatccat ttgaccttga attcatcgcc ggtcttactc aatgtgagaa aggtaactat
     5401 cttgattcta ttgtcgatag gcaacaagga atgcacggtt atatgcttca attaaccact
     5461 tttggtcgtg gttctgtttt tgatggtaag cacgttttta ccgctcatcg agggcagtta
     5521 ctcctcttta cacccaatgc cgttcaacac taccaccgtc acccggaaag ccaatattgg
     5581 cactacaaat gggtctattt tcagccgaat cctaaatgga ataaatggct gaattggtca
     5641 gatatggaag aaaaaatagg acgtatcacc attagcgatg atcgttactt tcaggaaatt
     5701 agccaacttt tcagtaaaat tgaattagaa cttaaatcca gtaaattttt taaagaagat
     5761 attgcaacaa gtttgttgga atacttactt atgaaatgta tttccgccga gaaaattgag
     5821 gttattcctg tcattgatca acgcattttg acagtttgtg atttaatctt aacgaatttg
     5881 gctaaaaatg agagcttaga agcaatggca gaaaaagtat ttttatcgcc atctcgcctc
     5941 tcacatcttt tcaagcaatc gctggggatc agcttagtgc aatggcggga attacaacgc
     6001 atttccgaat ccaaaaaatt gctttatttc tctaacatct ctatctctaa tattgcgaaa
     6061 tccttaggct atgaggattc tctctacttt tccaaaattt tcaaaaagca taccgggctg
     6121 tcaccctctg agtttagaac cttagaacgg cgtaaagaca gtgaaatgtg atcttgatct
     6181 cactttactt tgcatagcag aattttccat atcgataaca aaaagttacc tgtttttctc
     6241 tcattcaaaa gcataagata caaacagctt taatagtgct gtttctatta gagaagggat
     6301 atcaagctct gtgagtgata ttcagtgaaa taacttctta tgtatgaggg aagaacaatg
     6361 aaaaaaccaa cgttcaagca cgcattattt tcaagtattt tagctttagc ctgttacggc
     6421 tcggcatttg ccaatgatgt tgttaatatc tccaaaattg acggtatgcc gtggtttaat
     6481 cgtatggcag agggtgttgt gcaagcaggc aaagataaca atatcaatgc ttatcaagtt
     6541 ggtccatcaa ataccgatgc accacaacaa gtaaagttaa ttgaagattt aattgcgaaa
     6601 aaagttagtg ctatttccat cgtccctaac gatgcaaatg ccttagaacc ggtactgaaa
     6661 aaagcgaaac agaacggtat tgtggtatta accaatgagt cagtcggaca acctagtgcc
     6721 gattgggata ttgaaattat cgataatgca caatttgcag cagactatgt agaagaagta
     6781 gcaaaagcta tgggcggaaa aggcggctat gtgatttatg ttggtggttt aaccgtgcct
     6841 caacataatc tgtgggctga tttattcgtg aaataccaga aagagcatta tccggatatg
     6901 tttgaagtga ccagcagaat gcctgttgcc gaaaatatta atgatgcacg ccgtaccacc
     6961 attgatttag tgaaagccca ttccgatctt aaagcggtcg tttcttttgg ttcacaaggt
     7021 cctattggtg cagggttggc agtgaaagaa aaacgcttaa aaaataaatt aaatgtcttc
     7081 ggaatgatga ttccttccca agcagccaat ttaattaaaa gcggtgatat tacaatggga
     7141 attacctatg acccggccaa tgcaggttat gctttagctg ctgtcgctgc caaagtatta
     7201 aaaggcgaaa aaattgagga tggattagag atcccaacgg tcggtaaagc caaagtagat
     7261 agtgagaaaa aactacttca attccacaat gtgctgaaag tcaccaagga aaatatcgat
     7321 aaattatatt aatttgcttg aaatatgggc tgatagccag cccatatttt ccctcaggag
     7381 gcacttatgg catttatttc gatgcggcat atcagtaaaa cattccacgg cataaaagca
     7441 ttaaatcaag tcaatctctc attagattat ggcgaagcac tttgtcttgc cggtcaaaat
     7501 ggctgtggaa aatcaacctt gatcaaaatt ctttccggcg tttatcaacc ggataaaggg
     7561 gctgaaattc aaattggtgc aacccaatat accaagctga caccacagga atcgattgat
     7621 aaaggtattc aagtgattta tcaagattta gccctcttcc ccaatttaac cgtggcagaa
     7681 aatattgcca ttaacctgca ccgaaaattt ggctgggtga gtcaagatca cattcatcag
     7741 gttgccctca ctgctattca aagcattaat gcaaatctag acctgaatgc aatattagaa
     7801 gatttaccga tcgctcaaca acagttagtc gctatttgtc gagcgttagc acaaaatgcc
     7861 agattattga ttatggacga gccgactgcc tcacttactg caaaagaggt caaagatctg
     7921 ttagatgtcg tcatcaaact taaaagcaaa ggcattagca tcatctttgt cagtcataaa
     7981 ttgcaagaag taatgagtgt ttccgatagc gtattagtgc tgaaagatgg caatatggtt
     8041 gggcaatatc ctatccgtga aatgaatgaa aaacgccttg gtttcctaat gactgggctg
     8101 gaaatcgatt acaagcggtt agatttgccg gattttttgc aaagaaaaac cgtattggaa
     8161 gtccgcaatt taacgctgcc tcatcagtat caagagatta acttttcgct acgagaaggg
     8221 gaaattgttg cccttacagg attgctcggt tcagggcgta ctgagctttg cctaagttta
     8281 ttcggcatta ctcaaccaca atccggcgat attttattaa acggtgaaaa agtgatattt
     8341 aacactaacc gtgatgccat tgccaaaggg attgcttatg tatcggaaga tagaatgcac
     8401 accgggctga ttatggcaga gtcgattcat cacaatatta tttcgactat ttttcacaaa
     8461 atcaccgata aattacagat tattcaatcc tcgaaggctt atgcaagtag ccaagccttg
     8521 attgattcat taaagattaa agtatccgat tcagatttgc ctgttaatac cctttccgga
     8581 gggaacgcac agcgagtttc gattgcaaaa tggctggcaa tcgaccccaa aattattatt
     8641 ttagatgccc cgactattgg ggtcgatatc gccaataaag aagggatctt ccaaattatt
     8701 aaatcattgg ctcagcaagg cattgcagtt atttttgtga ctgatgaagt ggaagagacc
     8761 tactacaaca gccatcgggt aattgtaatg aaaaaaggtc gcattgttga tgaaatcttg
     8821 ccggcatatt ccagtgaaaa atcgattgcg gaggttattt atgaaaatca gcaataatca
     8881 tattctttcc agtacgttac tgattttaat cctattatta accctattta ctcgtgattt
     8941 tgcaactatt gagaaccttt atgatgttgt aaataattac gcaatgttaa tgattttagc
     9001 ttgtggttta tttgtggtat tgctgtctgg cggcattgat atttctttcc ctgctatcac
     9061 tattatttcc caatatgtta tggtcactct gatcggtaaa tatgatgtag gatttgccgg
     9121 cgtttttgtt atttcttcca ccatcggcat attattaggt tttattaatg ctctatttgt
     9181 taatcggctt agtgtccctt ccattattat tacgatctca acactcaata ttttttatgg
     9241 cggactactc tattttacca aaggtgtatg gctttatgag tatcccgaat ggtttaccca
     9301 agaaatcgtg ttctttaaac agataactgc tgagggagtg gaatttggat tatcgtttca
     9361 agcattaatg gctattttgg cggtgatatt aaccggctta attaccaata aactcactat
     9421 tggtcgaaaa atttacgctc ttggtggtaa tccggatgca acctcccgta ttgggtttaa
     9481 tctcttattt ctccatctat ttgcatacgg ttatatgggc tttatggcag gcttggcagg
     9541 catagtgcaa tcttataccg tacaatctgt cgcaccggat tcactactgg gttatgaatt
     9601 aaccgtccta gctgccgttg tattaggtgg tgctagttta tcaggtggta gaggcaccct
     9661 gcttggtaca gtaatgggcg taatgttact ggcgattatt caaaacgggc taaatttaat
     9721 gaatgtatcg tcttactggc aaaccattat taccggtatc atcattatct taagtattag
     9781 tgcaacagcc ttaagtcagc ggaaaaaaca aggagcataa cgatgaaaag taaactggat
     9841 ccaacgattt tctatctctt agcactcttc gcagttgcag ttatcgcctt tagtattttc
     9901 attccggata ttttttggtc tgtcagtaac tttcaatcta tggcatcaca aattccagta
     9961 ttaggtattt taaccctagc aatggcatta ccgatgttaa caggtggaat aaatctttcc
    10021 attattgccg gaatgaatgc ttgctcatta attattgcct actttattac gcaatatacc
    10081 ggtatttctt ggttatttat tgctatttta ttaagccttt gctgtgcctt agccattgga
    10141 ttactcaacg gcacattaat tgccattatt cgtgtttcac caattttggc aaccttaggc
    10201 acaatgactt taattaacgg cattaatatt ctagtcacta acggttcaac cattgcgaac
    10261 tttccggaaa caatgttgag tattaatgct tcagcctttt tatggattcc gctacccatt
    10321 ctaatctttc tctttcttgc tgggctgatt tggtttttct tagaaaaaac tgcaatgggt
    10381 aaagcggttt atttcatcgg caataatgaa aaagccacct attattcggg tattaatacc
    10441 aaaaaagtgc tgatttgggt ttatgttatc tcctcaattc tttgtgtatt tgcagctatt
    10501 ttgatgatgt ctaaactcaa ttctgcaaaa gcctcttatg gtgattccta tttgttgatc
    10561 tccattttag ccgcagtatt gggcggtatt aaccctgatg gaggtaaagg gaaactatta
    10621 gggattatgc tcgccttagt tttattacaa gtgattgaaa gtggcttaaa tatgctcggc
    10681 attagcagtt acattacaat gattttatgg ggaagcttat tgttattctt tatcttcctc
    10741 caaaaaaatc gccttttccg actaacacag taatggtggt agattatgca aaatgaaaaa
    10801 caactcattg aacaaggtaa tactgttatt ggtattgaat tgggctcaac ccgaattaaa
    10861 gcggtgttaa ttagctcaga tgggacgatt ttagcaaccg gtggggcgga ttgggaaaat
    10921 cgactgattg acggtatttg gacctatcat caaaatgaaa tatgggaaaa actacaagct
    10981 gcttatatgg atttaagcaa gacagtcaaa gaaaaatatc acacaaccat tcgcacagcc
    11041 aaagcattgg gaattagtgc gatgatgcac ggctacttac ctttcgataa acacggaaat
    11101 ccgctggttg cctttagaac ttggcgaaac aacattaccc taacctcatc ggaaaaattg
    11161 accgcactct ttcaataccc aattccgcaa cgttggagta ttgctcattt acaccaagca
    11221 ttgcttaacc aagagcctca cttgccggaa attgattacc tgacaaccct ctcaggttat
    11281 gtgcattggc aactgaccga tcacaaagtg ttagggattg gcgatgcttc cggcatgttc
    11341 ccgatagata ctgagttgaa atcctacaat ccaacaatgc tggctcaatt tgatcgagcc
    11401 attgccgact accgtatgcc ttggaaattg gaagcgattt tgccacaagt tcgtgttgct
    11461 ggtgaacaag cgggcaaatt aaccgaaaaa ggtgcaaaat tgttagatcc aaccgataat
    11521 ttgcaagctg gcattccact ttgtccacct gagggtgatg ccggaacagg tatgattgca
    11581 accaactgta tcaaagaaaa aaccggtaat atttctgccg gcacctccgc atttgcaatg
    11641 attgtgttag aaaaagccct atccaaagcc tattcagagc tggatattgt gacgaccccg
    11701 gcaggtaaat tagtggcaat ggctcacgct aataattgca cctctgatat taatgcgtgg
    11761 gtgaatttat tcggcgaatg cttatcggtt tttggcgtaa atatctgcac cgaagaactt
    11821 tatgaaatgt tatttctcca tgccttgcaa ggcgatgcag attgtggagg gctattatcc
    11881 tacggcttcc actccggtga acataatgtc ggtttatccg aaggctgtcc ggttttcttg
    11941 catccaacga atgcccattt taacttagca aactttatgc gaacccatct ctataccgct
    12001 tttggtgcaa tgaaattagg aatggacatt ctcattaacc aagaaaaagt ggaaatttcc
    12061 cgtattctcg gtcacggtgg tatatttaaa acagaaggtg ttgcacaaaa aattctgtct
    12121 tccgcactga atattccatt ggctaccgca agtactgctt caaatggcgg agcttgggga
    12181 attgcattac tggcagactt tctcagcgta tcagaccgtt acagtttaga agaatattta
    12241 gataattgca ttttcaacac caccaaactc aatctggttc aaccggataa aacaatgagt
    12301 gaaggttatg aacgctttat gcaacgttat aagcaaggca ttcctgtggt agaaaaagcg
    12361 ttgtttttaa atacagatta aataattata atttaagtat cacaagcggt tatttttgca
    12421 aaaaacgacc gcttgttatt tacatttgta caaaaaatac ctactataaa gacgcatttg
    12481 taaaatgtgc attgatatat cgcaagtttt gtgtatagga aatgaactaa ttactgtgtc
    12541 aatcagtccc tttcttcatc gttataccct cttgcaaatc cgattaatct atccttagtt
    12601 aaggtgtttt atgttagcga tttggcaaag ttttaaacaa aattatctaa tcaaatattg
    12661 gaatcctgtt gcagcagtga tcgcagctgg tattatttca gcttattatt tcggcattac
    12721 tggcacttat tgggcggtta caggggaatt tacccgttgg ggcggtcatc tgttaaatgc
    12781 tttgggtgtt gatgtttcga actggagcta ttttcaactc atcggcttag acggcaccat
    12841 ctttacccgc attgacggtg tgatgattct cggtatgttt gccggctgtc tttctgccgc
    12901 attatgggcg aacaacgtca aatggcataa tcagccacat aaaaaacgga ttatccaagc
    12961 cttgattggc ggtgcgttag ccggtttcgg agcccgttta gcaatgggct gtaacctcgc
    13021 ctctcttttt accggtattc cgcaattctc cgtccacgct tggtttttca cctttgcgac
    13081 cgccatcggc acttactttg gggtaaaagt gactttatta ccgatgttta gagtgaaatt
    13141 agagctgaaa aaaggggcag caaaaatcaa agaaaacgat ccgaaacaag ctaatcgccg
    13201 tttttgggtt ggtatgctca tttttatcac ttatctttct gcttcccttt atgtaatgca
    13261 atcctcaatc aaacttggtt ttgcaatgct ttgcggctta gcctttggct tattgattga
    13321 acgagcccaa atttgcttta cctccgcttt ccgtgactta tggattaccg gacgggctta
    13381 tatggcaaaa gcaattattt tcggcattat tgccggcaca atcggcgtgt tctcttatat
    13441 tcaattaggt gtttcaccta aaattttgtg ggctggccca aatgccatta tcggcggatt
    13501 attattcgga tttggcattg tgcttgccgg cggctgtgaa accggctgga tgtaccgttc
    13561 aatggaagga caggttcatt ttatgtgggt cggcgtaggc aatgtagtcg gttcaaccct
    13621 gctggcttac tactgaggcg acttagctcc ggtgcttacc cttgattatg aaaaaatcaa
    13681 cctactcaaa gaatttgggc cggttggcgg attattcatc aattatggct tattaattct
    13741 ttgcttaatc gctgtagttt ggtgggaaaa acgcttcctt gccaaagcga aagcaaaatt
    13801 agcaactgcg taatcttttt aacttcaacc aacaagagga aaatgactat ggcattcacc
    13861 gttgtacaaa aactagataa agatccaaaa gacatcacgc ctgattacac cttagatacc
    13921 ttaggcgaac cttgccctta ccctgcgatt acgatgttag aaacaatgcc acagctgcaa
    13981 aaaggagaga tattggaact gttaagcgat tgttcccaat cgattaataa tattccgatt
    14041 gatactaaaa atcacggcta taccctatta agcgtggaac aaaacggcac taaattacgc
    14101 tatttaattc agcgttaatt gcaaaaaatt cgcacaaaac gaccgcttgt cgtaaaatag
    14161 caactattta agagccttgt aacgcaaggc tcttttattc taagaggtaa aagaaaaatg
    14221 aataaatacg ctttacttgc aatattttgg tttattattg gcatttatgc tttacttttt
    14281 cgtgaaagca ctaatgatat accgcctttt ccacattttg ataaagtaag ccattttgcc
    14341 ttattcttta tccagatctg gttatctgca aacgccttta tccgttcaaa gaaagggata
    14401 ccttattttg ggctaataat ttttgcctta ctctatgctt tcaccagcga atgggctcag
    14461 gcaaccttca cctcaacccg agaaggttct tggcttgatg ggctagcaga tatgctagga
    14521 gcctcacttt cattattgct ggtaaaatat tgcaaaaaat aaagcataaa agaccgcttg
    14581 ttatatggtt tagccatact acaagcggtc attttttacc aaaattatgc catcaactca
    14641 tcaatcaatt ctttcacact tttgattttg ttgatttgtg aaatgccatt gcccaccgac
    14701 acatagccat tgtcaaaatc cccttctaac atacccaaac gcattcctgt accagcgttc
    14761 attaccttag caatctcact acgagttgcc ccattttcgc tcatttcaaa gcattttttc
    14821 gctaatccag tcggcagtga acggtagtaa tgtggttcgg tacggaataa cagcagatca
    14881 ttggcatttg cctccacaat ccagtttttc actttttcgc ttgcacggca ttcttcggtg
    14941 gcgataaatg ccgtgccaat ccacacgcct tcagccccaa gcgttaaggc agcctgcacc
    15001 gcttttttat cggcaatacc accagccagc attatcggca aatccacctt gcccacaaat
    15061 tccgccagca cattaaaact gcctacctct ttcatcggca aagtaccgcc ctcatcaaaa
    15121 cccgtcagca ccaaaatatc tgctcccaat gcttgggctt ttaaagcgtc cgccaaattg
    15181 ggattaggca aacggcagat gattttaatg ccagcagctt tgaatttggc gtaaatctct
    15241 gggtcaagcc agccgttatc cagcaccaca ggcacacgct cttcaatgaa taaatccacc
    15301 attaacggaa tcagcgaaaa atcataagac aaaataaatg gtacgccaaa aggcttatcg
    15361 gtcaatgcct taaccttacg aatctcgtta cgcatacggt caagtacttc ttcgttggaa
    15421 gttggattgg tggtttgccc tgcgtgtggg gctaaaaaac caagcccacc agcctcggca
    15481 acgcttgcta ccagatgagc gtccgtcagc caagacattg gcgcttggac gatagggtgc
    15541 ttgatattta agatttgggt aatgcggttc attggatttt cctgtttgaa taaaaagaat
    15601 tggacgtagt ttaatggttt tggatttgag agggaatgcg tgaaaatggg aaggtggttt
    15661 tcggatttgg aaaattatca atgctaaaat acttgaaata cacacgccaa tcctcatatc
    15721 aacaaaattg aatatttaat tatggtaaaa gaaaatgtct attagatggg aaaacatcaa
    15781 gcccttacaa ggttctcaaa atagtgcttt tgaagagcta gtatgccaat tggcacgcca
    15841 agaatttaaa tctcaaggaa aatttactcg aatttctgca cctgatggtg ggattgaagc
    15901 aatgtgtgaa ttgccagatg gttccgtatg tggttggcaa gccaaatatt ttttaagctc
    15961 attttcttca tcacaatggc aacaaattga agattccttt aaagaatctt taaaaaacta
    16021 tcctaaacta accaaatact atgtttgtgt ggcaaccgat agagcaaatg ccaatgtatc
    16081 tggaaagaaa tcatttctta ccaaatggga ggagtatacc caaagatgga aagactttgc
    16141 tcaatcacaa ggtcgtgaaa tagaatttga attttgggga agttttgaat tatctgactt
    16201 attatcaaaa cctgaaaatg caggcaaaaa attcttttgg tttaacgaaa gcgaattatc
    16261 tgacaaatgg tttgaacaat acaatcaaca agccattaat aatcttggtg tgcgttatac
    16321 acctgaaatt aatgttgatt tacctattgc aatgcaatta gaaagcttgg caagaaccca
    16381 aattttcaaa aaacatctga gtgatgaatt tcataaattg ttagtagaaa ttaaatcaca
    16441 atacaaatct ctttatcgtt acgaagcgtt ggaaaat
//
LOCUS       DANMBQ010000045        16450 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.045, whole genome shotgun sequence.
ACCESSION   DANMBQ010000045 DANMBQ010000000
VERSION     DANMBQ010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16450
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.045"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..402)
                     /locus_tag="PXE92_001235"
     CDS             complement(<1..402)
                     /locus_tag="PXE92_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760490.1"
                     /translation="MSIKKLLSTTIDQLENIIQVSGESFEKITSDLAEKAKELNSEYN
                     IKCEKLGYAITLFEKNSEIEKRYISLLSDFDMDTSIKGFEKLSLLMNGKNDNARKEAE
                     EHFNELQNGLLEAQDYKKDLDIKIRKLARELY"
     gene            complement(780..1814)
                     /locus_tag="PXE92_001236"
     CDS             complement(780..1814)
                     /locus_tag="PXE92_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5760491.1"
                     /translation="MKTVIADNSAEFVNEISQLIQSSKQRMTVAVNAELTLLYWHIGK
                     RINDYILQGERAEYGQEVVKNLAQSLTEQFGKGWSKRHLNYTMQFATTFPNLEIVHAL
                     RAQLSWTHFKQIIHIDDPTKRGFYATMAAQERWSTRTLEDRIGSLLFERTAISKKPDE
                     TIIAELSLLREKGEYNQSMVLKDPYILDFLDLNDRYMERDLEDAILREIEQFLLELGA
                     GFTFVARQKRIQIDNDDFYIDLLFYNRKLKRLIAIELKTESFKHSHKSQMELYLAWLA
                     KYEQEADENPPLGMILCTGKKQEQVELLDLKNSDIHIAEYMTVLPSKAVLEQRLHLAV
                     ERAKERFLLK"
     gene            complement(1857..2117)
                     /locus_tag="PXE92_001237"
     CDS             complement(1857..2117)
                     /locus_tag="PXE92_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760492.1"
                     /translation="MKPILYFADWCPDTAPFVAELDRLGIEYEPCDITKGGSTLKPFL
                     KLRDTHSAFDHAKANGYIGIPALLIEGEKVVLDLAELEGIFG"
     gene            complement(2197..3105)
                     /gene="glyQ"
                     /locus_tag="PXE92_001238"
     CDS             complement(2197..3105)
                     /gene="glyQ"
                     /locus_tag="PXE92_001238"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HDL5760493.1"
                     /translation="MSTKFNVKTFQGMILALQDYWASKGCTIVQPFDLEVGAGTSHPM
                     TCLRALGPEPMAFAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLDS
                     LKMLGFDPTQNDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPV
                     TGEITYGLERLAMYIQGVDSVYDLVWSDGELGKTTYGDVFHQNEVEQSTYNFEYADVD
                     FLFQCFEQYEKEAQYLLGLEKPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILR
                     IRALTKGVAEAYYASREALGFPGCKK"
     gene            3300..3911
                     /locus_tag="PXE92_001239"
     CDS             3300..3911
                     /locus_tag="PXE92_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentahemic C cytochrome"
                     /protein_id="HDL5760494.1"
                     /translation="MKSLSKIAFCFLAFIMPTFCFAGSNSYTTETIPLFADENLTQKI
                     GQLEAGAEIKLVQTTAKAAEIELNLWRKSKGFGRIWYHSFSKNITDAVFEKSFISNNP
                     LLEIVESKEDPNTGLVWQKVKMNVWVENAEFTQDLTNFWANTKNTYKTECSVCHKQRD
                     PKMHDANEWIAVFNGMVGFTDMDEATQKKVLRYLQMNAASSSQ"
     gene            complement(3995..4612)
                     /locus_tag="PXE92_001240"
     CDS             complement(3995..4612)
                     /locus_tag="PXE92_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5760495.1"
                     /translation="MILVCGANGLLGRAICDKLPREKTIAVLRKDAMDTFFSERNIAV
                     EIADLLDLESCNALLQKTQPEILITVVGGKNEQGIRSDKTANINLIKAVEKYSPTTKV
                     VLVTSVGCAEQWDLISPLAQQALGEALKAKTEAEAYLQQTALNWLIIRPGGLNNDEVN
                     DEYQIVRDLPNERKMYVSRKSVATGIVRLLDSTENHQIFSIINRG"
     gene            complement(4615..6432)
                     /locus_tag="PXE92_001241"
     CDS             complement(4615..6432)
                     /locus_tag="PXE92_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme anaerobic degradation radical SAM
                     methyltransferase ChuW/HutW"
                     /protein_id="HDL5760496.1"
                     /translation="MIIKDTHWTSQQASPNAFPERQALMPIWGGKNIERNQWQSLWLE
                     QAPNALLQDGLAYFHIPFCASHCIFCGFYRNAWKENYSQIYTDRVISELRYESSLWRG
                     QGKIHAVYFGGGTPTALHTEDLVRLIRACYRYLPLAEDCEFTIEGRISHFDIDKAKAC
                     IEAGVNRISIGIQTFNSEIRKRLGRKHSGEEAQTYLKALSELNAVIVADLIFGLPNQT
                     DDIWQNDIEIATSLPISGLDIYAFNNYPFLPINRLIEHGKLPAPAGFDTQSLHYAYAV
                     EKLKAQGWQQVSNNHFAFPNRGERNRYNTLVKSNMPCLAFGSGAGGNFGGLSYQVQSD
                     LKTYLDSPLDQKSLSFLSKHGEHKALLGVIQHSMELGYLDTTPFEQNAKAEKLLQQWE
                     ALDLLKREKNQVYLNTSGRYWSPTLIRKLMLTLPQSSKDNNMITPLTKELENKLRTNL
                     KENPGQILEMLAGMNQCSLESVINCLPKEMVMQTGGERFVEIMQAIAGWNEAVTFIIH
                     TPDAIAEVTAKLPQGKIGRGFYNFEHGVDGGIHGHLRYENCAAIYLLDRPFMGKRTVA
                     LTFINQSGEAMFKIFVGRDEQGQLRENQIQAMRKLIGGC"
     gene            complement(6589..7278)
                     /locus_tag="PXE92_001242"
     CDS             complement(6589..7278)
                     /locus_tag="PXE92_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005577085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HDL5760497.1"
                     /translation="MFMYLSHPLDPKDLAWPGEPVVEVTRCTDVGEETPFSSFITKLP
                     NHCGTHMDAPRHFVKDGLSINELPIEYFCHKEVALIEIPKGEAEGITKEDLLPYVDIL
                     SKVSFAFLRTGFEKYRTENPAIYQNECPYISTGAGQYLSDTFPNLKGVGIDFLALGSP
                     SSRVPDAENPKNCHRAILGYYTGRFTTVIEDMHLAELPKNANIKQFFNAPWRIKGLDS
                     SQVTCIVELQQ"
     gene            complement(7290..8630)
                     /locus_tag="PXE92_001243"
     CDS             complement(7290..8630)
                     /locus_tag="PXE92_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HDL5760498.1"
                     /translation="MLKKTLLFTLLLSHSLYAEDMIQENKSANITLLAEITAQGQKIN
                     GVALEYPDNVLSGSDLRQLYQVKTALDSAEKENRSVLKAYVNNEPKVTALPQAGKFVI
                     IELDTADKNAATYSVKDANKAPMKFKSKDENGNIVETEKVQAVKIPEFFANRLIYSVE
                     QKGLLKLTSGTTLGKTEWTQTAEPDKIKTPYLDDFVAKQVSLDQSGNKLNYRLYSPLQ
                     KNGEKYPLVIFLHGSGQVGSDNLAHLLSSKGAIATLPYAPSFVLAPQYDQVFDPFDNA
                     AKGQKGGIHWQTENRINLVLKMIDETLKANPQIDTTRIYINGLSRGAEGGLNLLLARP
                     NFFAGALLMSGREAYTNEWVDGNATKTNLAAIKHIPIWFFHSKEDKVSPVKGSRINYR
                     ILKDELNAPNVKYTEFTFEQAGDNGIVNNNPHNTWDAVYNSPEVIGWLLQQKRH"
     gene            complement(8692..10050)
                     /locus_tag="PXE92_001244"
     CDS             complement(8692..10050)
                     /locus_tag="PXE92_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntT protein"
                     /protein_id="HDL5760499.1"
                     /translation="MSNEMLILIGLASVVALLVIMIKGKVHPFLALGLVSIAVALTAG
                     IPMSKVIPTLISGMGSTLGSVALIVGLGAMLGKIIEKSHGADVLANWLLQRFGEKNAP
                     FALGMTGFIFGIPVFVDVGFIVLLPIIFSVARRLGGNILVYSLPIGLAMLLVHVLVPP
                     HPGIVAGAQNLNADIGFVLGIGLVAALPAYLIGQKFIPFFTKNNFVKVVTSTDLLQHQ
                     KDLIKEKGIELPSFGKVLAMISFPLILIMLGTVTATTLPKEHIVREVFSMVGSSPFAL
                     FVAVCLSAYVLGFRYGWTKHKLEEVLESALAPIAGIILITGAGGMFGKVLDASGVGKA
                     LADVLANTGLPLLVLSFILSALLRAAQGSATVATITTTTILAPAAVAAGYNDLQLALL
                     TAAIGAGSMTLSHVNDSLFWVWTKFFNVPVSVGLRTWTFLTTIFGVIAFAVVGIIWML
                     FV"
     gene            complement(10103..10879)
                     /locus_tag="PXE92_001245"
     CDS             complement(10103..10879)
                     /locus_tag="PXE92_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005547735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase family protein"
                     /protein_id="HDL5760500.1"
                     /translation="MPKFAANLTMMFNEVPFLDRFEAAANAGFKYVEYLWPYDYPAAE
                     LKAKLEQYGLKQVLFNTAAGDVAQGEWGVSAIPGREADSHRDIDLALEYALALGCENV
                     HVMAAVVPEGEDREAYKQTFIKNVQYAADKFKPHGINVLLEALSPEVKPNYLLKSQFD
                     TLEIVEAVNRDNVFVQLDYFHAQNVDGNLSRLTDKLKGKFAHIQIASVPDRHEPDEGE
                     INYQYIFNKLDEIGYEGYVGCEYKPRAETTSGLGWFEQYK"
     gene            complement(10881..11513)
                     /locus_tag="PXE92_001246"
     CDS             complement(10881..11513)
                     /locus_tag="PXE92_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HDL5760501.1"
                     /translation="MTEQEQKIEMVNLARSLFERGYTVGGAGNLSVRLDENRILVTPT
                     GSSLGRLEADRLSVLDMQGNVLSGDKPSKESVFHLAMYQKNPACQAIVHLHSTYLTAL
                     SCLENLDTDNAMRAFTPYYVMRVGKLPVIPYYRPGDINIARELGERALDGKAFLLANH
                     GVVVTGSDLRDAVDNTEELEETSKLYFILQGQKVRYLTDDEVNDLKNRGK"
     gene            complement(11510..12751)
                     /locus_tag="PXE92_001247"
     CDS             complement(11510..12751)
                     /locus_tag="PXE92_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005754893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL5760502.1"
                     /translation="MLGIIADDFTGASDIASFLTENGLKTVQMNGVPKTTLNSQVDAI
                     VISLKSRSNPVEEAIQQSLQALDWLKQNGCSQFYFKYCSTFDSTEKGNIGPVTDALMA
                     ALDTDFTVVTPALPVNGRTIFNGYLFVGDVLLNESGMRNHPITPMKDANLVRLMDAQS
                     QGKTGLVAYADVIQGAERVKARFAELKQQGYKYAVVDAADNSQLAVLAEAVADFQLVT
                     GGSGLGAYMAAYRSGGKKGTNAFVPSKGKTVVLSGSCSVMTNTQVAAYQQKAPSYFLE
                     AEKAIQDPNYVETLYQWVIANLDGDFAPMVYATVPPEKLKEIQTQFGGDKASHAIENT
                     FAKLAEKLQAAGVTNFITAGGETSSIVVQQLGFSGFHIGKQIAPGVPWLQAVEKPIFL
                     ALKSGNFGKEDFFSFAQEMFV"
     gene            complement(12753..13658)
                     /locus_tag="PXE92_001248"
     CDS             complement(12753..13658)
                     /locus_tag="PXE92_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL5760503.1"
                     /translation="MSQKYSVAVIGLGAMGMGAAKSCIAAGLDTYGVDLNPNYLETLK
                     AAGAKKVGTSAVDFAAELDAVLLLVVNANQVNAVLFGENGLAQHLKQGTVVMVSSTIS
                     AQDAKNISQKLTDLGLVMLDAPVSGGAAKAAQGEMTVMASGSSEAFEKLKPVLDAVAG
                     KVYNIGEEVGLGATVKIIHQLLAGVHIAAGAEAMALAARAGIPLDLMYDVVTNAAGNS
                     WMFENRMKHVVEGDYTPLSMVDIFVKDLGLVNDTAKSLRFPLHLASTAYSMFTEASNA
                     GYGKEDDSAVIKIFSGIELPKKEGK"
     gene            13832..14590
                     /locus_tag="PXE92_001249"
     CDS             13832..14590
                     /locus_tag="PXE92_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5760504.1"
                     /translation="MIPLERQREILRLINNNGVASINFLAEQLKVSHMTIRRDIQKLE
                     EQGKVSLVSGGVQSLERLIMELPHDDKSMLFQEQKSAIGSLASQLIPSNTTIYLDAGT
                     TTLEIAHRIIDRNDLLVVTNDFVIAHYLSNSGKCDLIHIGGSVCKENLSTTGSLAAEF
                     LKNLSIDMAFISTSSWNLKGLTTPNENKIPVKKAILEASKQNILVTDSSKYGKVATFF
                     VCPLTVFDQIICDKGLFENVRDALKGLSIKLDLG"
     gene            complement(14730..16121)
                     /gene="ffh"
                     /locus_tag="PXE92_001250"
     CDS             complement(14730..16121)
                     /gene="ffh"
                     /locus_tag="PXE92_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDL5760505.1"
                     /translation="MFENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVA
                     LPVVRDFINKVKERALGVEVNKSLTPGQEFLKIVQSELETAMGEANEELNLAAQPPAV
                     ILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFF
                     PTETSQKPVAIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLNPIETL
                     FTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVG
                     EKTDALEPFHPDRVASRILGMGDVMSLIEDIQRSVDQEKAEKIAAKFKKGDEFTLEDF
                     REQLIEMKKMGGMMSMLDKLPGAKNLPDHVKSQVDDKMFMKMEAIINSMTLKERANPD
                     IIKGSRRRRIALGSGTQVQDVNKLLKQFDDMQRMMKKMRKGGMAKMMRGVKGMMGGGL
                     GGLGGLGSMFGKR"
BASE COUNT         4685 a         3629 c         3168 g         4968 t
ORIGIN      
        1 ataaagctct ctagctaatt tcctaatttt gatgtctaaa tcttttttat aatcttgagc
       61 ttctaatagc ccattttgta attcattaaa atgttcttca gcttcttttc tagcattatc
      121 attcttgcca ttcattagta gagacaattt ttcaaatcct tttatacttg tatccatatc
      181 aaagtcagat aataatgata tgtagcgttt ttctatttcc gagttttttt caaataatgt
      241 tatggcgtat cccaattttt cacatttaat attatattct gaatttaatt cttttgcttt
      301 ttctgctaag tcacttgtaa ttttttcgaa actttcgccc gatacttgta ttatattctc
      361 aagttgatct atagttgtag ataataattt tttaattgac atatatttcc tttattatat
      421 ccttttcttt gcttttattg tacttatcaa gaaatgagag caactttatg attaacttgc
      481 aaaaaagtac tagactaatc aatctctcac tacgttttca cttctgccaa atctccccta
      541 gcccctcttt gctaaaaagg ggaatttgat cttcgtaaat ttataattca tctttcttca
      601 ttaagattgt aaatagtcag atgaattaaa attactcact aaatgatcgc cccctcttta
      661 gccaaagagg gggagggggg agatttgaaa atctctaacc acccaccaac ggaatatgca
      721 accaaatcgt ttccatcata ctttcatttt gcaacatttc cgctgatttt aaccgcttgc
      781 tattttagta aaaaccgctc tttcgccctt tccaccgcca aatgcaaccg ttgttccaat
      841 accgctttac tcggcaacac ggtcatatat tccgcaatat gaatatcgga atttttcaaa
      901 tccaacaatt ccacttgctc ctgcttttta ccggtgcaga gaatcattcc aagcggtggg
      961 ttttcgtctg cttcttgctc gtatttcgcc agccacgcca aatagagttc catttgactt
     1021 ttgtgggaat gtttgaagct ttcggttttt agttcaatcg caatcaggcg tttgagttta
     1081 cggttataaa acagcagatc gatatagaaa tcatcattat caatctgaat ccttttttgg
     1141 cgggcgacaa aggtaaaacc cgccccaagt tccagtaaaa actgttcgat ctctcgtaga
     1201 atcgcatctt cgagatcacg ttccatataa cggtcgttaa ggtcgagaaa atccaaaata
     1261 tagggatctt tcaacaccat tgactgatta tattcgcctt tttcacgtag caaactcaat
     1321 tcagcaataa tggtttcatc gggctttttg gaaattgccg tgcgttcaaa caataatgag
     1381 ccaatgcgat cttctaatgt ccttgtactc caacgctcct gtgcagccat tgttgcatag
     1441 aaccctcgct ttgttggatc atcaatatga ataatctgct taaaatgtgt ccagcttaat
     1501 tgtgcacgca gtgcgtgcac aatttccaaa ttagggaaag ttgtagcaaa ttgcattgta
     1561 taatttaaat ggcgtttact ccaaccttta ccaaattgct ccgtcagact ttgagcaaga
     1621 tttttcacca cttcttgccc atattccgca cgttcaccct gcaaaatata gtcattgatc
     1681 cgttttccga tatgccaata aagcaaggtt aattctgcat taaccgcaac ggtcattcgt
     1741 tgcttactcg attgaataag ttgtgaaatt tcattcacaa attcagccga attatctgct
     1801 attactgtct tcattattgg ctcctttgca acatttccgc caaattcaac cgcttgttag
     1861 ccgaaaatac cctctaattc agccaaatcc agcacgactt tttcgccttc gatcagcaat
     1921 gccggaatgc caatatagcc gttggctttg gcgtggtcaa aggcagaatg cgtgtctcgc
     1981 agtttcaaaa atggtttaag tgttgagcct cctttggtga tgtcgcacgg ctcatattca
     2041 atgcccaagc ggtctagttc tgccacaaat ggggcggtat ccggacacca atcggcgaag
     2101 tataaaatcg gtttcatcgt aaatccttgt agggacacga tgcttcgtgt ccgttttgta
     2161 atttattgac ggacgccaag cgtggcgtcc ctacgattat tttttacacc ccgggaaccc
     2221 caacgcttca cggctggcat agtacgcttc agcaacgcct ttggttaagg cacgaatgcg
     2281 tagaatgtag cgttggcgtt cagttaccga gatcgcttta cgagcatcta ataagttaaa
     2341 gctgtgagcg gcttttaaaa tgcgttcgta tgccggcaat ggcaatggtt tttctaggcc
     2401 taacaggtat tgggcttctt tttcgtactg ctcgaagcat tggaacagga agtccacatc
     2461 agcgtattca aagttgtagg tggattgctc cacttcgttt tggtggaata cgtcgccgta
     2521 ggtggtttta ccgagttcgc cgtcagacca cacgaggtcg tacacgctgt ccacgccttg
     2581 aatgtacatc gccaaacgct ctaagccgta ggtgatttcg cctgtcaccg gtttacattc
     2641 caagccgccg acttgctgga agtaggtgaa ttgggtcact tccattccgt tcagccacac
     2701 ttcccaacct aagccccacg ccccaagcgt tgggttttcc cagttgtctt ccacaaaacg
     2761 aatgtcgttt tgggttgggt cgaaaccgag cattttcagg ctgtcgaggt aaagttcttg
     2821 aatgttatcc ggcgaaggtt taatcaccac ttggaactgg tagtagtgct gtaaacggtt
     2881 cggattttcg ccgtagcgac cgtctgtcgg gcggcgagat ggttgcacat aggcaaacgc
     2941 cattggctca gggccaagcg cacgcaggca ggtcattggg tgcgaggtgc ctgcccccac
     3001 ttctaaatcg aacggctgca caatggtgca acctttgctt gcccagtagt cttgcagggc
     3061 taaaatcatt ccttgaaagg tttttacgtt gaattttgta ctcattttat tttctcttga
     3121 atttgaaaaa tggtcgaaaa atactggtta ttatagcttg taagcagtca ttttttggga
     3181 tttttttgca aaaaattaag aaatcgacat aaaatcagtt ttatgatgta aatcaacgct
     3241 tttttgctca atttgtgtaa catataacct aatttctcat ctaatttgtg gggtttatga
     3301 tgaaatcatt atcgaaaatc gctttctgtt tcttggcatt catcatgcca acattttgtt
     3361 ttgccggttc aaacagttac accacggaaa caatcccttt atttgccgat gaaaatttga
     3421 cacagaaaat cgggcagcta gaagccggag cagaaattaa attggtgcaa acaaccgcaa
     3481 aagccgctga aattgagctg aatttatggc gaaaaagcaa aggtttcggg cggatttggt
     3541 atcattcttt cagtaaaaat attaccgatg cggtatttga gaaatctttt atcagcaaca
     3601 acccactgtt agagattgta gagagcaagg aagatccgaa caccggcttg gtatggcaaa
     3661 aagtgaaaat gaacgtgtgg gtggaaaatg ccgaatttac ccaagatctc actaactttt
     3721 gggcgaacac caaaaatacc tataaaacag aatgcagcgt gtgccataaa caacgtgatc
     3781 ctaaaatgca tgatgcaaac gaatggattg cagtatttaa cggaatggtc ggttttaccg
     3841 atatggacga agctacccag aaaaaggtgc ttcgctactt gcagatgaat gcggcatcca
     3901 gttctcaata aaatagaaaa agatctcaca agcggtctgt tttatagttg caaaataacc
     3961 ataaaatatg cccgcttgcc ttcgttgaaa tatactatcc cctattaata atagagaaga
     4021 tttgatgatt ttccgtacta tccagtaaac gcactatgcc tgttgcgaca gatttacggc
     4081 ttacatacat tttccgttca ttaggtaaat cacgcacaat ctgatactca tcatttactt
     4141 catcattatt taacccaccg ggtcgaataa tcagccaatt taatgctgtt tgctgtaaat
     4201 aagcttcagc ttccgtcttg gcttttagtg cttcacctaa agcttgctgt gctaatgggc
     4261 taattaaatc ccattgttct gcacacccaa cactagtaac taaaactact ttcgtagttg
     4321 gtgaatattt ttcaactgct tttatcaaat taatatttgc tgttttgtcg ctacgaatac
     4381 cttgttcatt ttttcctcct actaccgtaa tcaagatttc cggttgtgtt ttttgtaaca
     4441 aggcgttgca ggattccaaa tctaataaat ctgctatttc tactgctata tttcgttcgc
     4501 tgaaaaacgt atccatagca tcttttcgta agacggctat cgttttctct ctaggtaatt
     4561 tgtcacagat tgctcgtcct aacaacccat ttgccccaca aaccaaaatc atgactagca
     4621 tcctccaatt aatttccgca tggcttgaat ctgattttct cgtaattgac cttgttcatc
     4681 acgcccaaca aaaatcttaa acatcgcctc accgctttga ttgataaaag ttaacgccac
     4741 cgttcttttt cccataaatg ggcgatcaag taagtaaata gcagcacaat tttcatagcg
     4801 taaatgaccg tgaattcctc catctacacc atgttcaaaa ttataaaaac ctcgcccaat
     4861 tttaccttgt ggcaatttag cagttacctc tgcaatcgca tcaggcgtat gaataataaa
     4921 agtcacagct tcattccaac cagcaattgc ctgcataatt tccacaaaac gctcaccacc
     4981 tgtttgcatt accatttctt tgggcagaca gttaattacc gattccaagc tacattgatt
     5041 cattcctgcc agcatttcta aaatttgccc tgggttttct tttaaatttg tccgcaattt
     5101 attttctaat tctttagtta atggcgttat catgttgtta tccttacttg attgaggaag
     5161 tgttaacatt agtttacgaa ttaatgttgg tgaccagtaa cgaccactgg tattgagata
     5221 tacttgattt ttttcacgct tcagtaaatc aagcgcttcc cattgttgca ataatttttc
     5281 agctttcgca ttttgttcaa aaggcgttgt atctaagtaa cccaattcca tgctatgttg
     5341 tatcacacca agcagtgctt tatgttcacc atgtttactc aaaaaagaaa ggcttttctg
     5401 atcaagaggc gaatctaagt aggtctttaa atcagattgt acttggtaac tcagcccacc
     5461 aaaatttccc cccgcaccgg agccaaatgc caaacaaggc atattcgatt taaccaaagt
     5521 attatagcga ttgcgttcac ctcgatttgg aaaagcaaag tggttattgc tcacttgctg
     5581 ccaaccttgt gcttttaact tctctactgc ataagcatag tgtaagcttt gggtgtcaaa
     5641 ccctgcgggc gcaggtaatt ttccatgttc aattaagcga ttaataggca ggaaaggata
     5701 attattaaag gcgtaaatat ctaagcctga gatcggtaaa ctagtcgcaa tttcaatatc
     5761 gttttgccag atatcatctg tttggtttgg caagccaaaa attaaatcag caacaatcac
     5821 agcatttaat tccgataagg cttttaaata agtttgagcc tcttcgccac tatgtttgcg
     5881 ccctaaacgt ttgcgaattt cggagttaaa agtctgaata ccaatagaaa tacggttcac
     5941 gcctgcttca atacaagcct tagccttatc tatatcaaaa tggctaattc taccctcaat
     6001 agtaaattca cagtcttcag cgagtggcaa ataacgataa caagctcgaa tcaatcgtac
     6061 taaatcttct gtatgtaacg ctgttggcgt tcctccacca aaataaacgg catgaatctt
     6121 accttgtcct cgccatagtg aagattcata tcgaagttca ctaatcacac gatcagtata
     6181 aatctggcta taattttcct tccaagcatt gcgataaaaa ccacaaaaaa tacaatgact
     6241 agcgcaaaac ggaatatgga aataagctaa accatcctgt aataacgcat ttggtgcttg
     6301 ttccagccat aaagattgcc attgattgcg ttcaatattt ttcccacccc aaataggcat
     6361 aagtgcctgt cgttctggga aagcatttgg agaggcttgt tgagatgtcc agtgtgtatc
     6421 ttttataatc attatcgaaa caaaatagtg ctataaacaa ggtcatattt ataacaaaat
     6481 taagttatga atgacttgat taaaatcaaa taataattat tttcaattaa tgattgagtt
     6541 atgcttacta tagtaaatag cctctcctaa aatgaatata tctgtggttt attgctgtaa
     6601 ttccacaata caagtcactt gactggaatc taacccttta attcgccacg gtgcattaaa
     6661 aaactgctta atgttggcat ttttagggag ttccgctaag tgcatatctt caatcacagt
     6721 ggtaaacctg ccggtatagt agcctaaaat cgctcgatgg caatttttag ggttttccgc
     6781 atcaggcact cgggaagaag gagaccctag tgccaagaaa tcaatgccta ctcctttcaa
     6841 attcgggaaa gtatcagata aatactgccc ggcaccggtt gaaatatagg ggcattcatt
     6901 ttgataaata gcagggttct cggttctata tttctcaaac cccgttcgta aaaaggcaaa
     6961 agacaccttg gagagaatat cgacataagg caataaatct tctttggtga tcccttctgc
     7021 ctctcctttg ggaatttcaa ttaaagcgac ctctttatgg cagaaatact ctatcggcaa
     7081 ttcattgata cttaaaccgt ctttcacaaa gtggcgagga gcgtccatat gtgtgccgca
     7141 atgattcggt agtttcgtga taaaactgct aaatggcgtt tcttcaccta cgtctgtgca
     7201 gcgagtcacc tcaacaacag gttctcccgg ccaagctaaa tctttaggat ctaacgggtg
     7261 agacaaatac ataaacacag tgagcctcct tagtggcgtt tttgctgaag taaccaccca
     7321 atcacctcag ggctgttata cacagcgtcc caagtattat gagggttatt attgacaatg
     7381 ccgttgtcgc cggcttgttc aaaagtgaat tcggtatatt tcacattggg ggcatttaac
     7441 tcatctttga gaatgcggta gttaatgcga gaacctttta ccggcgagac tttgtcctct
     7501 ttactatgga aaaaccaaat cggtatatgt ttaattgccg ccaaattcgt tttggtggca
     7561 ttgccgtcca cccattcgtt ggtgtaggct tcacgaccgc tcattaataa tgctccggca
     7621 aagaaattcg ggcgagccaa caacagattt aagccccctt cagcacctcg agataagcca
     7681 ttgatataaa tgcgtgtggt atcaatttga ggattggctt ttagggtttc atcaatcatt
     7741 tttaacacga gattgatacg attttccgtt tgccagtgaa taccgccttt ttgccctttg
     7801 gcggcattat caaatgggtc gaatacttgg tcgtattgcg gagcaagtac aaaacttggg
     7861 gcataaggca gggtggcaat cgccccttta ctggaaagca ggtgagcaag gttatccgaa
     7921 ccgacttgcc ctgaaccgtg taggaaaatc acaagcgggt atttttcacc atttttttgc
     7981 aaaggcgaat agagacggta gttcagttta tttccagact ggtctaagct cacttgtttt
     8041 gcgacaaaat catcgagata aggggttttg attttgtcgg gttcagcggt ttgtgtccat
     8101 tcagtcttgc ctagagttgt gccgctggtt aatttaagca agcctttttg ttccaccgaa
     8161 tagattaggc gatttgcaaa aaactctgga attttgaccg cttgtacttt ctctgtttct
     8221 acaatgttgc cgttttcatc tttggattta aatttcatcg gcgctttatt agcatctttt
     8281 acgctataag ttgccgcatt tttatctgcc gtatccaatt caataatcac aaatttaccg
     8341 gcttgcggaa gtgcggtcac ttttggctca ttattgacat aggctttgag caccgaacgg
     8401 ttttctttct ccgcactatc taatgccgtt ttgacctgat acagttggcg aagatcgctg
     8461 cctgataaga cattatcagg atattccaat gccacgccgt taattttttg accttgagcg
     8521 gtgatttcgg caagcaacgt aatattcgct gatttatttt cctgaatcat atcctctgca
     8581 tagagggagt gagaaagtaa tagcgtaaat aaaagtgttt ttttcagcat aggtttctcc
     8641 taaaaaaatc cacctcataa gaggtggatt ttaagcagta acagagtgat attaaacgaa
     8701 taacatccaa ataatgccaa caacggcaaa ggctattaca ccgaaaatag tcgttaaaaa
     8761 cgtccaagtt cttaagccta cggatacagg aacattgaag aatttcgtcc atacccagaa
     8821 gagtgaatca ttcacgtggg ataatgtcat agaacctgca ccaatagctg cagtaagaag
     8881 tgctaattgc agatcattat aacctgctgc tacagctgca ggagctagaa tagttgtagt
     8941 agtaatagtt gccaccgttg cagaaccttg tgctgcacgc aataatgcag aaagtatgaa
     9001 agaaagaacc aataacggta agcccgtgtt ggctaataca tctgctaatg ctttacctac
     9061 gccactggca tctaacactt taccgaacat accgcctgca ccggtgatta aaataatccc
     9121 cgcaatcggt gctaacgcag actccagtac ttcttctaat ttatgcttag tccaaccgta
     9181 tctaaaacct aatacataag cagaaagaca aacagccaca aataaggcaa acggagagct
     9241 tcctaccata ctgaatactt cacgcacgat atgttctttc ggcaaggttg ttgccgttac
     9301 tgtacctaac ataatcagga ttagcgggaa agaaatcatt gctaacactt taccaaaaga
     9361 aggtagttca atgcctttct ctttaatcaa atctttttgg tgctgtaaaa gatcggttga
     9421 agttactact tttacgaaat tattttttgt aaagaacgga ataaattttt gaccgattaa
     9481 atatgcaggt agcgctgcta ctaagccaat tcccaataca aagccaatat ctgcgtttaa
     9541 gttttgagca cccgctacaa tacctggatg aggtggaact aaaacgtgaa caagtaacat
     9601 cgcaagcccg attggcaaag aataaacaag gatatttccc cctaaacgtc tcgctacact
     9661 aaaaataatc gggagcaata cgataaaacc aacatcaacg aaaacaggaa taccgaatat
     9721 aaaacctgtc atacctaatg caaagggagc gtttttctca ccaaaacgct gtaacaacca
     9781 atttgctaat acatccgcac cgtgagattt ttcaatgatt ttccctaaca ttgctcccaa
     9841 acctactatg agtgcaacgc tacctaaagt acttcccata cctgaaatca aggttgggat
     9901 cactttactc attggaatac ctgcagttaa ggcaactgcg atactcacta accccaatgc
     9961 taagaatggg tgtactttac ctttaatcat aatgaccaga agagcaacta cgcttgctaa
    10021 tccaatcaaa attaacattt catttgacat aaagtttcct tctaaatgtt gtattcacgt
    10081 atttatccgc taatcatcgt ggttatttat actgctcaaa ccaacctagt cctgaggtgg
    10141 tttccgctcg tggtttatac tcgcaaccta catagccttc atacccgatt tcatcgagtt
    10201 tgttgaagat atattggtag ttaatttccc cttcgtccgg ttcgtggcga tctggcacag
    10261 aggcaatttg aatgtgggca aatttaccct tgagtttgtc ggttaggcga gataagttgc
    10321 cgtccacatt ctgtgcgtgg aagtagtcaa gctgtacaaa cacattgtct cggtttaccg
    10381 cttccacaat ttctagcgta tcaaactggc ttttaagcag ataattcggt ttcacttcag
    10441 ggcttagggc ttcaagcaag acgttaatgc cgtgcggttt gaatttatcg gcggcatatt
    10501 gcacgttttt gataaaggtt tgtttatagg cttcacgatc ttcgccttct ggcacgaccg
    10561 ctgccataac gtgaacattc tcacaaccta aggcgagggc atattccaac gctaaatcaa
    10621 tatcacgatg gctatcagct tcacgccccg gaatggcaga aacaccccat tcaccttgag
    10681 caacatctcc ggctgcggta ttgaacaaca cctgttttaa gccatattgc tcaagtttgg
    10741 ctttcaattc tgctgccgga taatcataag gccataaata ctcgacatat ttaaatccag
    10801 cgttggcagc cgcttcaaaa cgatctaaaa acggcacttc gttaaacatc atcgtaaggt
    10861 ttgctgcaaa tttaggcatt ttattttcct ctgtttttca gatcattgac ttcgtcatcg
    10921 gtgagataac ggactttttg accttgtaga ataaaataga gcttggaggt ttcttccaac
    10981 tcttctgtgt tatccaccgc atcacgcaag tctgaacctg tgactaccac cccgtgattt
    11041 gccagtaaaa aggctttgcc gtctaaggct cgttccccca gctctcgggc aatgttgatg
    11101 tcgcccggac ggtagtaagg aatgaccggc aattttccta cccgcatcac atagtaaggg
    11161 gtgaaagcac gcatagcgtt gtcggtatcc aaattttcca agcaagaaag tgcggttaaa
    11221 taagtggaat gcagatgcac tattgcttgg caagccggat ttttctgata catcgccaag
    11281 tggaataccg attcttttga aggtttatct cctgaaagaa cattaccctg catatccaat
    11341 acggaaaggc ggtctgcctc taaacgcccg agcgaagagc cggttggggt aactaaaatg
    11401 cgattttcat ctaaacgcac ggagaggttg cccgcaccgc caacggtata gccccgctca
    11461 aacagcgagc gggcaagatt gaccatttca atcttttgtt cttgttctgt catacaaaca
    11521 tctcctgagc aaaactgaag aaatcttctt taccgaagtt acccgatttc aatgcaagaa
    11581 aaatcggttt ttcgaccgct tgtaaccacg gcacgcccgg tgcaatttgt ttgccgatgt
    11641 ggaaaccgct gaatccaagt tgctgaacca caatgctcga agtttcaccg cctgcggtaa
    11701 taaagttagt tacgcctgcg gcttgtaatt tttcggctaa tttggcaaag gtattttcaa
    11761 tggcgtggct ggctttatcg ccgccgaatt gggtttgaat ctctttcaat ttttcagggg
    11821 gaacggtggc ataaaccatt ggggcaaagt caccgtctag gtttgcaatc acccattgat
    11881 aaagcgtttc tacatagttc ggatcctgaa tggctttttc cgcttctaag aaataacttg
    11941 gggctttttg ctggtaagcc gccacttggg tattggtcat taccgagcaa gaacccgaaa
    12001 gcacaacggt tttgcctttg cttggtacaa acgcattcgt gccttttttg ccgcctgaac
    12061 ggtaagccgc catataagcc cctaagcctg aaccgcctgt gactaattga aaatcggcaa
    12121 ccgcttcggc aagcaccgca agttgtgaat tatcggcagc atctactacc gcatatttgt
    12181 agccttgctg tttcaattca gcaaaacggg ctttcacacg ctctgcccct tgaatcacat
    12241 cagcataggc aaccaagccg gttttgcctt gagattgtgc atccattaaa cgcaccaagt
    12301 tggcatcttt catcggggta atcgggtggt tacgcatacc agattcattc agtagcacat
    12361 cgcccacaaa caaatagccg ttgaaaatgg ttctgccatt gacaggcaga gccggtgtga
    12421 ctacggtaaa atcggtatct aatgccgcca ttagggcatc ggttaccggc ccgatattgc
    12481 ctttctccgt gctgtcaaaa gtggaacaat atttaaagta gaattgcgag caaccatttt
    12541 gtttcagcca atctaaggct tgtaatgatt gttggattgc ttcttccaca gggttagagc
    12601 gagatttcag gctaatcaca atcgcatcaa cttgactgtt aagtgtagtt ttcggcacac
    12661 cattcatttg caccgttttt agcccgtttt cggttaagaa actggcgatg tcactcgcac
    12721 cggtgaaatc gtctgcaata atgcctaaca tcttatttcc cctctttttt aggtaattcg
    12781 ataccactga aaattttaat gaccgcacta tcatcttcct tgccgtaacc tgcgttgctg
    12841 gcttcggtaa acatagaata agcggtgctg gctaagtgaa gcgggaaacg caaagatttt
    12901 gcggtgtcgt tcaccaatcc caaatctttc acaaaaatat ccaccataga gagtggggtg
    12961 taatcgccct caacaacgtg tttcattcgg ttttcaaaca tccaagaatt gcctgccgca
    13021 ttggttacaa cgtcatacat taaatcaagc ggaataccgg cacgagccgc caatgccatt
    13081 gcttctgcac ctgcggcaat atgcacaccg gcaagtaatt gatggataat ttttaccgtt
    13141 gcacccaagc cgacttcttc gccaatgtta tacactttgc ctgcaaccgc atctaatacc
    13201 ggttttaatt tctcgaatgc ctcgctggaa cctgatgcca tcacagtcat ttcaccttgt
    13261 gctgcttttg ctgccccacc cgaaaccgga gcatctaaca tcaccaagcc taaatctgtt
    13321 aacttctgtg aaatattttt tgcatcttgt gcagaaatgg tggaagatac catcaccacc
    13381 gtaccttgtt tcaaatgttg ggctaagccg ttttcaccga ataacaccgc attcacttgg
    13441 ttggcattaa ccaccaacaa caacaccgca tctaattcag cggcaaaatc gaccgcactt
    13501 gtgccgactt tcttagcacc tgctgctttt aaggtttcca gataattcgg gttaagatcc
    13561 acaccgtatg tgtctaatcc ggcagcgata caagattttg ctgctcccat acccattgct
    13621 cctaagccga tgacggctac gctatatttt tgactcattg tttattccct caaataaatt
    13681 aatgaacttg atggcggtat attaaccaat agaaaagata aaatctgtga tgaagatcac
    13741 aaatattaac aataaatgtg aatttttgtg attttaattt tggaaactaa atctgatata
    13801 atctctttta acaattaaaa taggttaaaa aatgatcccc ttagagagac aacgagaaat
    13861 actacgactt attaataata atggtgtcgc aagtattaat tttctggcag aacagctaaa
    13921 agtatcacat atgacaattc gccgtgatat tcaaaagctg gaagagcaag gtaaggtatc
    13981 cctagtatct ggtggagttc aatctcttga acgattaatc atggaattac cacacgatga
    14041 taaatcaatg ttattccaag agcagaaatc agctatagga tctttagcat cacagctaat
    14101 tccctcaaac acaactattt atcttgatgc tggaactact acattagaaa tagctcatcg
    14161 gataatcgat agaaatgact tactagttgt aacaaacgat tttgttattg ctcactatct
    14221 tagtaattca ggaaaatgtg atttaattca tataggagga agtgtctgta aagaaaacct
    14281 atcgacaact ggttcacttg cagcagaatt tctgaaaaac ctatcaatcg atatggcatt
    14341 tatatctact tcatcctgga atttaaaagg tctaacaacg ccgaacgaaa ataaaatccc
    14401 cgttaaaaaa gcaattttag aggcatccaa gcaaaacatt ttagtgacag actcttcaaa
    14461 atatggaaaa gtcgcaactt tttttgtttg ccctcttact gtatttgacc agattatttg
    14521 tgataaagga ttatttgaga atgtacgaga cgcactgaaa gggctaagta ttaaattaga
    14581 tttaggataa tcttcttacc aattttttct gagaacgaca agcaatcaaa aagtattatt
    14641 tttgcaaata agatattaat agggaaagtt aacaatccta gcaacggatt gttaactgat
    14701 tttcggctgg tactaataaa ataggaatat taacgtttac caaacatact gcctaagcca
    14761 ccgagaccgc ctagaccacc acccatcata cctttaacac cacgcatcat ttttgccatt
    14821 ccgcctttac gcattttttt catcatacgt tgcatatcat caaactgctt gagcagctta
    14881 tttacatctt gcacctgtgt gccggagcca agtgcgatac ggcggcggcg tgagccttta
    14941 ataatatccg gatttgcccg ctcttttaag gtcatagaat tgatgatggc ttccattttc
    15001 atgaacattt tatcatcaac ctgactttta acgtggtcag gcaggttttt cgcccccggt
    15061 agtttatcga gcatcgacat cattccaccc atttttttca tttcgataag ctgctcacgg
    15121 aaatcttcca aggtaaattc atcgcctttt ttgaatttgg cggcaatttt ttccgctttt
    15181 tcttgatcaa ccgagcgttg aatatcttca attaaagaca ttacatcgcc catacctaaa
    15241 atgcgggaag ccacacggtc agggtggaac ggctcaaggg catcagtttt ttcacccaca
    15301 cctaagaatt taatcggttt accggtgatt tggcgaatag aaagtgccgc accgcctcgg
    15361 gcatcgccat cgactttggt aagaataaca ccggtaagcg gcaacgcttc gttaaaggct
    15421 tttgcggtgt tggcggcgtc ttgaccggtc atcgcatcaa ccgtaaatag cgtttcaatc
    15481 ggattcagca cagcgtggat ttgttggatc tcttccatca tttcgccatc aacgtgtaaa
    15541 cgaccggcag tatccacaat caatacatca aagaaattaa gcttagcgtg cttcagtgcc
    15601 gcttctgcaa tcgctaccgg tttttggctg gtttcggtcg ggaagaagtc cacttttaac
    15661 gcttcagcaa gggtctgtag ctgcttgata gcggcagggc ggtaaacatc ggcagaaact
    15721 accaacacct ttttcttgtg gcgttctttc aggaattttg ccaatttgcc gacagaggtg
    15781 gttttacccg caccttgcaa acctgccatt aaaattaccg caggcggttg ggccgcaaga
    15841 ttcagctcct cgttggcttc tcccattgcc gtttctaatt cgctttgtac gatttttaag
    15901 aactcttgcc ccggcgtgag gcttttgttt acctcaaccc ctaacgcacg ctctttgacc
    15961 ttgttgatga aatcacgcac aacagggagg gcaacatccg cctccaacaa tgccatacga
    16021 acttcacgca gggtatcttt aatattatct tccgttaggc gacctttgcc cgtaatgtta
    16081 cgcagcgttt tagacagtct gtcagagagg ttttcaaaca tatcagcttt ctcaatttgc
    16141 aaaattttag gaaaaaagta ccgcttgtga gcggaaagtt gccgccatta tacaaaaaaa
    16201 agcgttacgg ttatagggaa ataaaaaaac ggcatagcga ttaaactatg ccgtaaaatt
    16261 tgacgatatt cgaggaatca ttatttagtt atattgtgcg atcataatac tccgaattgc
    16321 gtataaaagt gaagtgatat tttcaaattt atgttagaaa tgagaggtaa attacaaaat
    16381 taaaggggat attattgttt gaaaaaataa gagcgaaaag aaaaccctga tgattgctca
    16441 tcagggcttc
//
LOCUS       DANMBQ010000046        16294 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.046, whole genome shotgun sequence.
ACCESSION   DANMBQ010000046 DANMBQ010000000
VERSION     DANMBQ010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16294
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.046"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..167)
                     /locus_tag="PXE92_001251"
     CDS             complement(<1..167)
                     /locus_tag="PXE92_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5760506.1"
                     /translation="MKAQQLKNAILQLAIQGKLVPQDPNDEPASELLCKIQAEKDRLI
                     AEGKIKKNKKTA"
     gene            complement(373..2034)
                     /locus_tag="PXE92_001252"
     CDS             complement(373..2034)
                     /locus_tag="PXE92_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL5760507.1"
                     /translation="MLTWEHIEKMIAHQQFIREKAEIEYKEAKNSVPKDLWHTYSAFA
                     NSNGGFILLGIKENEQGHFPELLISGVNDPDKVIDELFSQSRSEKVSKSLLKDNDVKI
                     FQVENKSVIAIYVKAADILDRPIHLNGDYRLSYVRLNSGDHKLTSSELRSFISSYSQK
                     DADGRIVPYASIDDISLSTLDKYRNLLKAHNSTSKLLTLSDEKLLQEIGAYKKDLAQN
                     SEGITNAGLLMFGKHYAITSIFPHFFFEYYEEAGDVKRYTLRITDFDLEEGNLFEFYL
                     KIVPLIQELGKDKHFKLDNLTRTEENEITDGLREALINAITHADYFNNVRHLKVIKTK
                     DNKLIFENAGVMLVDIPTAIAGQRSECRNSIIHNLFHRLGLCERQGQGVRDIYSYWQS
                     RNFNSPLLESEIDYTKLTLTFQSGMIADFEEKFTACFGENFSELQPIQKDCLLFIAFN
                     QGKAMFAELAQKLPQYPRRNITLALARLKEKGLLTSSGSPRKQLYTLVNLEWIITEKS
                     QDDYFNPPFDQLDKASESKGAPPKKSKVKQVKQLPQNKANKLPPK"
     gene            complement(2047..3516)
                     /locus_tag="PXE92_001253"
     CDS             complement(2047..3516)
                     /locus_tag="PXE92_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HDL5760508.1"
                     /translation="MSLNNIVKRLQDVMRNDAGINGDAQRIEQIVWILFLKIYDAKEQ
                     EWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPTLKNLPISADT
                     PMNQRIIRAAFEDNNNYMKNGVLLRQVINIIDEIDFAHYQERHAFGDIYENILKSLQS
                     AGNAGEFYTPRAVTDFMVQAIKPKLGERIADFACGTGGFLTSALKVLESQIQTLSDRT
                     LFNNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHDNALEKSVKDYTENDKFDVILMN
                     PPYGGSEIEQIKKNFPTALQSSETADLFMSVIMYRLKQNGRAAVVLPDGFLFGTDNAK
                     VAIKKKLLEEFNLHTIIRLPHSVFAPYTSITTNILFFDKTEPTRETWVYRLDMPQGYK
                     NFSKTKPMKLEHFNEVVEWWGNRQVIEVEGFDKAKSFTLKEMSDRQYNLDLCGFPHEE
                     EEILPPDELIADYQRKRTAYNADIDKILAEITDILGIKL"
     gene            complement(3564..5915)
                     /locus_tag="PXE92_001254"
     CDS             complement(3564..5915)
                     /locus_tag="PXE92_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5760509.1"
                     /translation="MYTLQELKQMNEQEIRSRLISPAIRNAGWSDRQIGEEYTFKTNK
                     RFTDGQVVVDPKTTQTKRIEAKRVDYLLYTSANQKIAVVEAKDNHHSSRHGLQQAMTY
                     ARLLDVPFAYSSNGDEFVEHDFITGVQRTLPMSAFPTPDELHQRWAKQYTTEELKIIQ
                     QPYYTSSTDTFKEPRYYQEIAINRTVEAVAKGQQRILLVMATGTGKTYTAFQIIHRLK
                     TSGAKKKILFLADRNVLVDQPMMQDFKPFKDKMVKVSNKKLDSAYEVYLALYQQLDGE
                     TDNELFKQFQPSFFDLIVIDECHRGSAKEDSDWRAILKYFKDATHIGMTATPKETDDA
                     SNITYFGEPIYTYSLKQGIEDGFLAPYRVIRVDLDCDLKGWRPTKGLKDHQGNEIEDR
                     LYTVKDFDYNIVLNDRTRLVAERICEFLRKTDRLQKTIVFCANINHAERMVAELSRLN
                     ADMLKHNSKYVCQITGDQSGKGVDLEEFCDVANEGKDYPVIAVTSKLMTTGVDSKTCK
                     LVVLDANIQSMTEFKQIIGRGTRLRPDFGKEFFTILDFRGVTRLFADPAFDGEPVVIL
                     DVPENKPLVEQPLPKPSDKDIIKDPELKPYKIPVVVDFGTLKLRILDEKVQYLNEQGE
                     LVSEDIDLFSKREMQKEFGSYEQFQQQWTTSGEIFSKFYTDPKWLAALRQTRQFSHDV
                     EDFDVLSHISFGKKPLTKTERAEKVKQSGYVEQYSPENQQVLGLLLNEYVKSGNQDLT
                     KTEILKTPQFSRFGGLVSIIKNFGGKELYQKAVKGLEKMIYSE"
     gene            complement(5987..6880)
                     /gene="psd"
                     /locus_tag="PXE92_001255"
     CDS             complement(5987..6880)
                     /gene="psd"
                     /locus_tag="PXE92_001255"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251643.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL5760510.1"
                     /translation="MQLKKYPVPTYFQRVKIALHYLLPQLAITRAAGWLAEQKWGVVT
                     HLIIKLFAKQYKVNLSEAKKTEPSDYATFNEFFIRELKENARPINQDPNTLCLPAEGK
                     VSESGEISDNRLLQAKGHHFTLETLLANDEEMAAKFKDGTFITTYLSPTDYHRVHMPC
                     DGTLRKMIYVPGELFSVNPFLAEHVPNLFARNERVICEFDTAFGPMLQILVGATVTAS
                     MSTVWAGVINPPRADEVVVWNYETEGEKAIKLQKGEEMGAFRLGSTVINLFPKGKVHL
                     NPALIAGMQTRMGEELGRIIN"
     gene            complement(7045..7383)
                     /locus_tag="PXE92_001256"
     CDS             complement(7045..7383)
                     /locus_tag="PXE92_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDL5760511.1"
                     /translation="MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQI
                     TNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRTKNGNFKNIEQLAEVSGIGQATV
                     EKNRANIILE"
     gene            7676..8995
                     /locus_tag="PXE92_001257"
     CDS             7676..8995
                     /locus_tag="PXE92_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="opacity-associated protein A"
                     /protein_id="HDL5760512.1"
                     /translation="MTQNNFRKEPVFGESSVTSQDAEATKTDTAQAPYVSLRSTKAPG
                     HTFTPIMKRPDAKVEDHTADVFSAKQAKEFQFTPSSEATEAVEPDNTIHSVEESVSTA
                     SFNAVEAQENVEKEVVKPAPESFTTERIIPNAATAAAAATAAAAATKTKEIKAKMPPK
                     TRRLLLVALLALALLVLFFLLKPSTPETVEELQSQQGGSLPIEFRPVDEAEAKRAEEQ
                     ARAEQEAAEAAKAQEQAQAAQQESVTVAPAQTEQTMAKPSQDSQSQTQSQAVVEQPVA
                     VKPVENKPVVAQPAIKPKTENSVVFQPETTVKQQPKAPAKTEVKTERATLAAKETAKT
                     AAKPVEKAPTKTEAVKAAPAAESANAVATKTMTVPKGVSLMQVFRDNNLNISDVNAMS
                     KVNNVVSNLKVGERVTVRLDKNNRVVEMSIGSGGKFTRQANGSYTFK"
     gene            9113..9475
                     /locus_tag="PXE92_001258"
     CDS             9113..9475
                     /locus_tag="PXE92_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HDL5760513.1"
                     /translation="MLVACSTVVTPVEQIHQVQKEKESVKKVTKLIAQAPKVSLYRCE
                     NDKKVEVERQGRTKKALKKEIVTVSYQGTTHQLSPSVTRDGKKYTNIRWTWHETRSGK
                     AFLYNNTKKTLAANCIKQ"
     gene            9586..10623
                     /gene="waaF"
                     /locus_tag="PXE92_001259"
     CDS             9586..10623
                     /gene="waaF"
                     /locus_tag="PXE92_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HDL5760514.1"
                     /translation="MNILVIGPSWVGDMMMSHALYQQLKIQYPNCQIDVMAPDWCCPL
                     LARMPEVRNAISMPIGHGSFRLCERYRLGKSLRNQYDMAIVLPNSLKSAFIPLFAKIA
                     RRRGWKGESRYFFLNDLRSNKNDYPMMVQRYVALAFEKATVPTAQQLPIAYPYLTTDS
                     EQIEQTKAKFEKQLAYAENRPAIGFCPGAEFGPAKRWPHYHYAILAKMLIEQGYSVRL
                     FGSKKDEAAGEQIRLALPENLQRYCLNLAGQTDLNQAVDLIADCNAVVSNDSGLMHIA
                     AALNKPLVALYGPTSPQYTPPLSQNAEIMRLIEGGLIKIRKGEGAEGYHQSLIDIQPE
                     MVMDKLAELLV"
     gene            10690..11649
                     /gene="rfaC"
                     /locus_tag="PXE92_001260"
     CDS             10690..11649
                     /gene="rfaC"
                     /locus_tag="PXE92_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HDL5760515.1"
                     /translation="MKILIVKTSSMGDVLHTLPAITDMQNAIPDLKVDWVVEENFTEI
                     PAWHSAVNKVIPVAIRRWRKNLCQRQTWVECQQFLKQLKSEQYDAVIDAQGLIKSAVL
                     VTRQAKGKKFGYDKNSAREGLSSLFYDETFNIPYQQHAVERIRKLCAKSLGYALPTER
                     GDYCIAQHFAKNPQKTTAYIMLIHATTRADKHWQEAYWAELIQALDKHNLAVRLPWGN
                     QAEKERAERLASVANNAKVLPKMSLTDIATQLAGAAAVVSVDTGLSHLAAALDKPNVI
                     LYGATDPKLIGAYGQNQFYLKADKMENITSSQVLEKLLPLINK"
     gene            11770..12144
                     /gene="rpsL"
                     /locus_tag="PXE92_001261"
     CDS             11770..12144
                     /gene="rpsL"
                     /locus_tag="PXE92_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDL5760516.1"
                     /translation="MATINQLVRKPRVKKVVKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRIRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGAL
                     DCAGVKDRKQGRSKYGVKRPKA"
     gene            12275..12745
                     /gene="rpsG"
                     /locus_tag="PXE92_001262"
     CDS             12275..12745
                     /gene="rpsG"
                     /locus_tag="PXE92_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDL5760517.1"
                     /translation="MPRRRSIEPRKILPDPKFGSELLAKFINVLMVDGKKSTAEKIVY
                     GALETLTQRSGKEALEAFEIALENVRPTVEVKSRRVGGSTYQVPVEVRPTRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAADNKGSAVKKREDVHRMAEANKAFAHFRW"
     gene            12847..14949
                     /gene="fusA"
                     /locus_tag="PXE92_001263"
     CDS             12847..14949
                     /gene="fusA"
                     /locus_tag="PXE92_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDL5760518.1"
                     /translation="MARTTPISLYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMSQQYPQHRINVIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRTGANFLRVVEQIKT
                     RLGGNSVALQLPIGAEDSFKGVVDLIKMKAINWNEADQGMTFTYEDIPADMLEACEEH
                     RAMLVEAAAEASEELMEKFFSGEELTEDEIKAALRQRVLAGEVIPVCCGSAFKNKGVQ
                     AMLDAVIDYLPAPTDIPAIKGINEDETEGERHASDDEPFASLAFKIATDPFVGNLTFF
                     RVYSGVINSGDTVYNSVKQKRERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVGTG
                     DTLCAIDAPIILERMEFPEPVISVAVEPKTKADQEKMGLALGRLAQEDPSFRVHTDEE
                     SGETIISGMGELHLDIIVDRMKREFKVEANIGKPQVSYRETIRTRVNDVEGKHAKQSG
                     GRGQYGHVVIDLYPLDAEGPGYEFVNEIKGGVIPGEYIPAVDKGIQEQLKSGPLAGYP
                     VVDLGVRLHFGSYHDVDSSELAFKLAASLAFKAAFAKASPVLLEPIMKVEVETPPDYV
                     GDVIGDLSRRRAMVNGQEANEFVVKINAEVPLSEMFGYATDLRSQTQGRASYSMEPLK
                     YAEAPKNVADAIIEARRK"
     gene            15009..16193
                     /gene="tuf"
                     /locus_tag="PXE92_001264"
     CDS             15009..16193
                     /gene="tuf"
                     /locus_tag="PXE92_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDL5760519.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKHFGGAA
                     RAFDQIDNAPEEKARGITINTSHVEYDTATRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ
                     YDFPGDDTPIVRGSALQALNGVAEWEEKILELANHLDTYIPEPERAIDKPFLLPIEDV
                     FSISGRGTVVTGRVERGIIRTGDEVEIVGIKDTAKTTVTGVEMFRKLLDEGRAGENVG
                     ALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFR
                     TTDVTGTIELPEGVEMVMPGDNIKMTVSLIHPIAMDEGLRFAIREGGRTVGAGVVAKI
                     IK"
BASE COUNT         4851 a         3189 c         3454 g         4800 t
ORIGIN      
        1 gcagtttttt tgtttttttt gatctttcct tctgcaatca agcggtcttt ttctgcttgg
       61 attttgcaaa ggagttcgct tgccggttca tcatttggat cttgtggaac gagcttgcct
      121 tggattgcta gttgtaggat tgcgtttttt agctgttggg ctttcatttt ttattctcaa
      181 taatcggttg ttatttctta aagtatcttt gattacggtg ttttgggttt tctgggaatt
      241 gcatttcgat cacaccaagc gttagtgcag gttttaaata ctgcatacgg aaatgcttat
      301 catcttttaa cctgagtttt ttcataattt ctttgctctt catcggctca agcaacactg
      361 aaagtaagcg atttacttcg ggggtaattt gtttgctttg ttctggggta attgtttgac
      421 ttgcttcact ttgcttttct tcgggggggc gcccttactc tcactagctt tatcaagttg
      481 gtcgaaaggt ggattaaaat aatcatcttg tgatttctct gtgattatcc attctaaatt
      541 cactagggta tagagttgtt ttctcggact ccccgaactg gttagtaagc ctttttcttt
      601 cagtcgtgct agtgccaaag taatatttct gcgtggatat tggggcagtt tttgtgctaa
      661 ttctgcaaac attgctttac cttgattgaa ggcgataaag agtaagcaat ctttttgaat
      721 aggctgtaac tcagagaaat tttcgccaaa gcaagcggta aatttttcct caaaatctgc
      781 aatcatacct gattgaaaag ttaaggtgag tttagtgtaa tcaatttcac tttctaaaag
      841 cggtgaattg aaatttcggc tttgccaata tgaataaata tcccgaacgc cttgtccttg
      901 tcgctcacat agccctaaac ggtggaataa gttatgaata atagaattac ggcattccga
      961 tctttgccct gcaatagccg tgggaatatc aaccaacatt actcctgcat tttcaaaaat
     1021 cagtttgtta tctttggttt taatgacttt tagatggcga acattgttaa agtaatctgc
     1081 gtgagtaatt gcattgatta gagcttcccg tagcccgtca gtaatttcat tttcctcagt
     1141 acgggttaaa ttatctaatt tgaaatgttt atctttacca agctcttgaa taagtggcac
     1201 aattttcaag taaaattcaa agagattgcc ttcttcaaga tcaaaatcgg taatccgtaa
     1261 tgtatagcgt tttacatcac cagcttcttc gtaatattca aaaaagaagt ggggaaatat
     1321 gcttgtaatg gcatagtgct taccaaacat caataagcct gcattggtaa tgccctcgct
     1381 attctgtgct aaatcttttt tataagcccc aatttcttgc agcaatttct catcggataa
     1441 cgtaagtaat tttgatgtgc tgttatgggc tttcagcaga tttctgtatt tatccaatgt
     1501 gcttaaactg atatcatcaa tagaagcata aggcacaatt ctcccatcag catctttttg
     1561 gctatagctt gaaatgaaag aacgcagttc agaggaggtg agtttatgat cgcctgaatt
     1621 taaacgaaca taagaaagtc gataatcacc atttaaatgg ataggacggt ctaaaatatc
     1681 agctgctttc acataaattg caatcacgct tttattttca acttgaaaga ttttcacatc
     1741 attatccttt aataaggatt tactgacttt ttcactacga gattgggaaa ataattcatc
     1801 aatgacttta tcaggatcat taacaccaga aattagcagt tcaggaaaat gtccttgttc
     1861 attttccttt attcctaata aaataaagcc accattgctg tttgcaaaag ccgaataagt
     1921 atgccaaaga tcttttggca cactattttt tgcctcttta tattcaattt ctgccttttc
     1981 tcggataaat tgctgatgtg caatcatttt ttcgatatgt tcccaagtca gcattttatg
     2041 ctcctattac agtttaatgc ctaaaatatc ggtaatttct gctagaatct tatcaatatc
     2101 agcattgtaa gcggtgcgtt ttcgctgata atctgcaatt agttcatcag gcggaaggat
     2161 ttcctcttct tcgtgaggaa agccacataa atcgaggttg tattgacggt cggacatttc
     2221 ctttaatgta aaacttttcg ctttgtcaaa cccttcgact tcaatcactt ggcgatttcc
     2281 ccaccattca acaacttcgt tgaaatgttc caatttcatc ggtttagttt tggagaaatt
     2341 tttataaccc tgtggcatat caaggcgata aacccaagtt tcacgggttg gctcggtttt
     2401 atcaaaaaac agaatattag tcgtaatcga ggtataaggg gcaaagacac tatgcggtaa
     2461 gcggataatc gtatgcagat taaactcttc taatagcttt ttcttaatcg caactttggc
     2521 attatctgtg ccgaacaaaa atccgtcagg cagcaccacc gcagcccgtc cattctgttt
     2581 taggcggtac ataattaccg acataaacag atcagcggtt tcactgctct gtaaagccgt
     2641 agggaaattc tttttaattt gctcaatttc tgaacctccg taaggtggat tcatcaaaat
     2701 cacatcaaat ttatcatttt cggtgtaatc tttgaccgat ttttctagag cattatcgtg
     2761 atgtacattc ggattatcaa tatcgtgcaa caataaattg gtaatacaaa gcaggtgagg
     2821 aagggctttt ttctcaatgc catacacaga attattgaat aaagtgcggt cagaaagggt
     2881 ttgaatttga ctttccaata cctttaacgc cgaagttaaa aaaccacccg tcccacaggc
     2941 aaaatcggca atgcgttcgc caagtttcgg tttgattgct tgtaccataa aatcggttac
     3001 agcgcgaggg gtataaaatt cccctgcatt acctgcactt tgtaaacttt tgaggatatt
     3061 ttcataaata tcgccaaagg cgtgtcgttc ttggtaatgg gcaaaatcaa tttcatcaat
     3121 gatattgata acctgacgta ataacacccc atttttcata tagttgttat tatcttcaaa
     3181 agcagcacgg ataatccgtt ggttcatcgg cgtatcggct gaaataggca gattttttaa
     3241 agtcgggaaa agttcgttat tgacgaaaga gagtaattca tcaccagtca tcgctttgcc
     3301 gtctttttta tcttccgccc aattttgcca gcgtaaaaaa ttcggcaaaa ttgagtgata
     3361 ttcatcgttt tccagttccc actcttgttc tttagcatcg taaattttca agaataagat
     3421 ccagacgatc tgttcaatgc gttgggcatc accgttaatc cctgcatcgt tacgcattac
     3481 atcttgcagg cgttttacta tgttgttgag gctcattgtg atccttgttt atctgtaaaa
     3541 ttttgttgta aaataaccgc ttgttattcc gaataaatca tcttttctaa gccttttacc
     3601 gctttctggt agagttcttt accgccgaaa tttttaataa tagacactag acctccaaaa
     3661 cggctgaatt gcggtgtctt taaaatttcg gttttagtca gatcttgatt gccggatttg
     3721 acatattcat taagcagcaa ccctaaaact tgctggtttt cgggcgaata ctgctccaca
     3781 tagccacttt gtttcacttt ttctgctcgt tcggttttag tcagtggttt tttgccaaag
     3841 gagatgtggc ttaatacatc aaagtcttca acatcgtggc tgaattggcg tgtttggcga
     3901 agggctgcca gccattttgg atcggtgtaa aatttcgaga aaatttcacc gcttgttgtc
     3961 cattgctgtt ggaactgttc gtaactgccg aactcttttt gcatttcccg ttttgagaac
     4021 agatcaatat cttcagaaac cagctcgccc tgctcattca gatattggac tttctcgtct
     4081 aaaatgcgta atttgagtgt gccgaaatcg acaactaccg ggattttata tggctttagc
     4141 tcggggtctt taatgatgtc cttatcactg ggtttaggaa gcggttgttc gacaagtggc
     4201 ttattttccg gtacatctaa aatcaccacc ggctcaccat caaatgccgg atcagcaaac
     4261 aggcgagtaa cgcctcgaaa atctaaaatg gtgaaaaatt ctttgccgaa atcagggcga
     4321 agacgagtgc ctcgtccgat aatttgttta aattccgtca ttgattgaat gtttgcatca
     4381 agtacaacca gcttacaggt tttgctatct acacctgttg tcatcaattt agaggttacg
     4441 gcaatcacag ggtaatcttt cccttcattt gctacatcac aaaattcttc taaatcaacg
     4501 cctttgcctg attggtcgcc tgtaatttgg cagacatatt tggaattgtg tttcaacata
     4561 tcggcattga ggcgtgaaag ctctgccacc attcgctctg catggttgat gttggcacag
     4621 aagactattg ttttctgcaa gcggtcggtt ttgcgtaaaa attcgcaaat tctctccgca
     4681 accaagcggg tgcgatcatt tagcacaatg ttgtaatcga aatctttgac tgtatagagg
     4741 cgatcttcaa tctcattacc ttgatgatct tttaaacctt tggttggtcg ccagcctttt
     4801 aaatcacagt ccagatcaac acgaatcact cgataagggg caagaaagcc gtcttcaata
     4861 ccttgtttga ggctataggt ataaatcggc tcgccaaaat aggtaatgtt gctggcatca
     4921 tcggtttctt tgggggttgc agtcataccg atatgggtgg cgtccttgaa atacttcaaa
     4981 atagcacgcc agtcagaatc ttcttttgct gaaccacgat gacattcatc gatcacaata
     5041 agatcaaaga aagagggttg gaactgctta aacagttcgt tatcggtttc accgtcaagc
     5101 tgttgataaa gtgcaagata gacttcataa gcactgtcga gctttttatt gctgactttc
     5161 accattttgt ctttaaacgg tttgaagtct tgcatcattg gctgatcgac tagtacattg
     5221 cgatcggcaa gaaataaaat tttctttttc gcaccactgg tttttaaacg atggataatt
     5281 tggaaagccg tataggtttt acccgtgcct gttgccatta ccaataaaat cctctgctga
     5341 ccttttgcta cagcttcaac agtacggtta atcgcaattt cttggtagta acgaggctct
     5401 ttaaaggtgt cagtgctact ggtgtaataa ggctgttgaa taattttcag ctcttcggtg
     5461 gtatattgtt tcgcccaacg ttggtggagt tcgtcgggag taggaaatgc tgacatcgga
     5521 agggttcgtt gtacgccagt gataaaatcg tgttccacaa actcatcacc atttgagcta
     5581 tatgcaaaag ggacatcaag caatcgagcg tatgtcattg cttgctgtaa gccgtgtcgg
     5641 gaagagtgat ggttatcttt ggcctcgacc acggcaattt tttgatttgc ggaagtatag
     5701 agcagataat caacccgttt tgcttcgatg cgtttagttt gcgtcgtttt tggatcaaca
     5761 actacttgcc catctgtaaa tcgtttattg gttttaaatg tgtactcttc gccaatttgt
     5821 ctatccgacc atcctgcatt tctaattgca ggagagatta atcgagagcg aatttcttgc
     5881 tcgttcatct gctttaattc ttgaagtgtg tacatatttt tccttccgat aagagtttct
     5941 tatcggaaga ttatagcaaa cagtttaggt aaaattaact caggatttaa ttgataattc
     6001 tacccaactc ttcccccatt cgggtttgca ttcctgcaat aagtgcaggg ttgagatgta
     6061 ctttaccttt cgggaagagg ttaattacgg ttgagcctaa acggaaagct cccatttctt
     6121 cgcctttttg gagtttgatg gctttttcgc cttcggtttc gtaattccaa actaccactt
     6181 catcagcgcg aggcggatta attacgccag cccaaaccgt actcatactt gcggtaaccg
     6241 ttgcaccgac caaaatctgt agcattggtc cgaatgcggt gtcaaattca caaatcacac
     6301 gctcattgcg agcgaataag tttggaacgt gttcggctaa aaacggattg acggagaaca
     6361 attcgcccgg cacataaatc attttacgca atgttccatc gcacggcata tgtacacgat
     6421 ggtaatcagt tggcgataag taggtggtaa taaatgtgcc gtctttaaat tttgccgcca
     6481 tttcttcatc atttgccaat aaggtttcta gcgtaaaatg atgccctttt gcttgtaata
     6541 aacggttatc cgaaatttcg cctgattcgc tgactttacc ttctgccggt aagcaaagtg
     6601 tatttggatc ttgattaatc gggcgtgcgt tttcttttaa ttcacggata aaaaattcat
     6661 taaaagtagc ataatctgac ggctcggttt ttttagcttc agataaattg actttatact
     6721 gttttgcaaa cagtttgatg ataaggtgag taactacgcc ccatttttgc tctgctaacc
     6781 aacctgccgc acgggtaatt gccagttgtg gcagtaaata gtgcagagcg attttcacac
     6841 gttggaaata ggttggaact ggatattttt ttaattgcat tgcgttttcc ttttatttaa
     6901 aaacgagaat ttgcgtttaa ttgggggcga agtatagcaa atacaatgca aaatagataa
     6961 aaaatcttta aggtgttgaa gtggctacaa agaaaaaaac agataggggc tttgtaggaa
     7021 ttccacttca acaatttggt tgtcttattc taaaataata ttggctcgat ttttttctac
     7081 cgttgcttgc ccaattccgg agacttcagc aagttgctca atgtttttaa aattgccgtt
     7141 tttagtacgg taatcgacaa tcgcttgagc ttttttctgc ccaattccca ctagcttgtc
     7201 ttgcaattca gcagcactag cagtattgat atttaccgca ttagcgttgg tgatttgtgt
     7261 ttgctgtacg ggttgagtga ctgcattttg ttcaacaggc attgtagttg gcggtgtttg
     7321 ggcaaaagcc attgcattta agccaaacaa gaatgttaga ccaagttgtt tgattttctt
     7381 cataggattt ccttattagt tgttgaaagg tcgaaaggaa gattaagagg gaataaaata
     7441 gaactcaacc ggcaaaaata aatttttcga cacagatcga aaaaatagaa aatggctaaa
     7501 cttctagacg tgcatttggt ctgaaattca atgaaagtaa atagatttgc aaaaaattag
     7561 gcaaaaatga ccgctagttg cgtaaattta gttaaataaa ttcaaatagc ggctgaattg
     7621 ctttagaata tcgccatttt tatactcatt aacaacgcta ttatttggaa ttaatatgac
     7681 acaaaataat tttcgcaaag aaccggtttt tggtgaatct tcggttacct ctcaagacgc
     7741 tgaagcaacc aaaacagata cagctcaagc cccttatgtt tcgttgcgtt caaccaaagc
     7801 accggggcat acgtttaccc caattatgaa aagacctgat gctaaagtag aagatcatac
     7861 ggctgatgtc ttttcggcta agcaggcaaa agaattccaa tttactccaa gttcagaagc
     7921 tacagaagca gtagagccgg ataataccat tcattcggtt gaagaaagtg tatcaaccgc
     7981 atcttttaac gcggttgaag cacaagaaaa tgtggaaaaa gaagtggtta aacctgcacc
     8041 cgagagtttc actactgagc gtattattcc aaatgcggca acagctgccg cagcagccac
     8101 tgcggcagct gcagccacta aaaccaaaga gattaaagct aaaatgccac ctaaaacccg
     8161 ccgtttatta ttagtggcat tgttggcgtt agcattattg gtactgtttt tcttgttaaa
     8221 accaagtacg ccggaaactg tcgaagagct acaatctcag caaggtggta gcttgccgat
     8281 tgaattccga ccggttgatg aagctgaagc gaaacgtgcg gaagaacaag ctcgtgcaga
     8341 acaagaagcc gctgaagctg caaaagctca agaacaagct caagccgctc aacaagagtc
     8401 tgtaacagtt gctccagccc aaaccgagca aacaatggct aaaccgtcac aagatagcca
     8461 gtcgcaaaca caatcacaag cagtagttga gcaacctgtt gcggtgaaac cggtggaaaa
     8521 taaaccggtt gttgcacaac cggcgattaa gcctaaaacg gaaaatagcg tggtgttcca
     8581 acctgaaaca acggtaaaac aacagcctaa agcccctgct aaaactgaag tgaaaaccga
     8641 acgtgctaca ctggcagcaa aagaaacggc aaaaacagca gctaaaccag ttgagaaagc
     8701 tccgacaaaa actgaagcgg taaaagcagc accggctgcc gagtcggcaa atgcggtagc
     8761 aaccaaaaca atgactgtgc caaaaggtgt atcactaatg caagtgttcc gtgataacaa
     8821 tttaaatatc tcagacgtta atgcgatgag caaagtcaat aacgtggtga gtaatttaaa
     8881 agtaggcgag cgagtaaccg ttcgtttaga taaaaataac cgtgtggttg aaatgagcat
     8941 tggctcaggc ggcaaattta cccgtcaagc aaacggtagc tatactttta aataaataaa
     9001 atgaagaaaa agagcaacgc tacaaacgtt gctcttttat ttaaaaagga gataaaggat
     9061 gaatttattt tgcccctctt acaaacttat ctacttaacg ctaagctcag cgatgttagt
     9121 tgcttgtagt acagtggtta cccctgttga gcaaattcat caagtacaaa aggaaaaaga
     9181 gtcagtaaag aaagtgacta aactgatagc acaagcacct aaagtgagtt tatatcgttg
     9241 tgagaatgat aagaaggttg aagttgaacg ccagggacga acaaaaaaag cgttaaaaaa
     9301 ggaaatagtc acagtgagtt atcaagggac aacgcatcag ctttcacctt ctgtaacgag
     9361 agatggtaaa aaatacacta atatccgttg gacttggcat gaaacccgta gtggtaaagc
     9421 atttttgtat aacaacacta aaaaaacgtt agcggcaaat tgcataaagc agtaacaagc
     9481 ggacacaaaa agtatcgctt tttgaacgtt ggctttgcca acggcagcga agctgtgaac
     9541 aatccttaca aggattgtga ataaattttt aagagaattt tgcaaatgaa tattttagtt
     9601 ataggaccgt cttgggtggg tgatatgatg atgtcgcacg cactttatca acagcttaaa
     9661 atacagtatc cgaattgcca aattgatgta atggcacccg attggtgttg tccgctttta
     9721 gcccgtatgc ctgaggtgcg taatgcgatt tcaatgccga ttggacacgg ttcatttcgt
     9781 ttgtgtgaac gctaccgact cggaaaatcc ctgagaaatc aatatgatat ggcgattgta
     9841 ttgcctaatt cattaaagtc tgcctttatt ccactgtttg cgaaaattgc gagacgtcgt
     9901 ggttggaaag gggaaagtag atattttttc ttaaatgatc ttcgcagtaa taaaaacgac
     9961 tacccaatga tggtgcaacg ctatgtagcc ttggcgtttg aaaaggctac tgttccaacc
    10021 gcacaacagt tgccgattgc ttatccatac ctcacaactg atagcgaaca aattgagcag
    10081 accaaagcga aatttgaaaa acagttggct tatgcggaaa accgtcctgc catcggcttt
    10141 tgtccagggg ctgaatttgg accggcaaaa cgttggccgc attatcatta tgcaatattg
    10201 gcaaaaatgt tgattgagca aggctattcg gtacggttat ttggctcgaa aaaagatgaa
    10261 gccgccggtg agcaaattcg cttggcatta cctgaaaatt tacaacgcta ttgcctgaat
    10321 ttagccgggc aaaccgattt aaaccaagcg gtagatttga ttgcagattg taatgcagtc
    10381 gtgagcaatg actccggctt aatgcacatt gccgcagcac taaataaacc gctggtcgcc
    10441 ttatatggac cgaccagccc acaatatacg ccgccgttat cccaaaatgc cgagatcatg
    10501 cgcttaattg aaggcggttt gattaaaatc cgcaaaggcg aaggggcaga gggctatcac
    10561 caaagtttaa ttgatattca gcctgaaatg gtgatggaca aattagctga actgttagtt
    10621 taaatggata acaagcggtt gaatttgcca attttttgca aaaaaagacc gcttgtttgt
    10681 ttataaaaga tgaaaatttt aatcgttaaa acctcatcaa tgggagatgt attacatacg
    10741 cttccagcca taaccgatat gcaaaatgct attcccgatt taaaagtaga ttgggtggtg
    10801 gaggagaatt ttaccgaaat tcctgcgtgg cattcagcgg taaataaagt aattccggtg
    10861 gctattcgcc gctggcggaa aaacctttgc caaagacaga cttgggtaga atgccagcag
    10921 tttttaaaac agctaaaaag tgagcagtat gatgcggtaa ttgatgctca agggctgatt
    10981 aaaagtgcgg tgttagtaac tcgccaagcc aaaggcaaaa aatttggcta tgataaaaac
    11041 tctgcccgag aagggttaag tagtctgttt tacgatgaaa cgtttaatat cccctaccaa
    11101 caacacgctg tagaacgcat cagaaaatta tgtgcaaaat cattaggtta tgctttgcca
    11161 accgaacggg gcgattattg cattgcacaa cattttgcaa aaaatcctca aaaaacgacc
    11221 gcttacatta tgctgattca cgccactacc cgagcggata aacattggca agaagcctat
    11281 tgggcggagt tgattcaagc gttggataag cacaatctgg cagtcagatt gccttgggga
    11341 aaccaagccg aaaaagaacg ggcggagcgt ttagcgagtg tggcgaataa tgctaaggta
    11401 ttgccaaaaa tgagcttaac cgatattgct actcaacttg cgggagcagc ggcagtggtg
    11461 tcggtggata ccggcttgag ccatttggcg gctgcgttag ataagccaaa tgtgatttta
    11521 tatggggcaa ccgatccaaa acttatcggg gcttacgggc aaaatcagtt ttatctaaaa
    11581 gcagataaaa tggaaaatat tacctcttca caagtgctag aaaaattact tccattgatt
    11641 aacaaatgat cattgttgtt ctcttactgt gcttgacttt tatccacgtt caatttagaa
    11701 ttcaccgtcc tttcgtgtga aaggatgttt ttaattttat ttttaataat tttaactgga
    11761 gcttttttaa tggcaactat caaccagcta gtacgcaaac cgcgtgtgaa aaaggttgta
    11821 aaaagtaacg ttcctgcatt agaggcttgc ccgcagaaac gtggcgtgtg tactcgtgta
    11881 tacactacta cacctaaaaa accgaactca gcattacgta aagtatgtcg tattcgttta
    11941 acaaatggct ttgaagtaac ttcatacatc ggtggtgaag gtcacaacct tcaagaacac
    12001 agtgttgtat taatccgtgg tggtcgtgtt aaagacttac cgggtgttcg ttaccatact
    12061 gtacgtggtg cacttgactg tgcaggcgtt aaagatcgta aacaaggtcg ttctaaatac
    12121 ggcgttaaac gtcctaaagc ttaatggttc tccgttgagt aaggccaaac gtctaaattt
    12181 taatatttaa accataaact ccagtcaaga tgccttaagg cagattagat gagttttgga
    12241 tatcctgaag atttaatata cggagaaatt tccaatgcca cgtcgtcgta gtattgaacc
    12301 acgcaaaatt cttccagatc cgaagttcgg ttcagaatta cttgcaaaat ttattaacgt
    12361 gttaatggta gatggtaaaa aatctactgc agaaaaaatc gtttacggtg cattagaaac
    12421 tttaacacaa cgttctggta aagaagcgtt agaagctttc gaaatcgcat tagaaaacgt
    12481 acgtccaact gttgaggtta aatctcgccg tgtgggtggt tctacttacc aagttcctgt
    12541 agaagttcgc ccaacccgtc gtaatgcttt agcaatgcgt tggatcgtag aagccgctcg
    12601 taaacgtggt gacaaatcaa tggcattacg tttagctaac gaattatcag atgcagcaga
    12661 caacaaaggt tcagcagtga agaaacgtga agacgttcac cgtatggctg aagctaacaa
    12721 agcgtttgct cacttccgtt ggtaatcgtt taagcaaact tatcaaaggc ttcatctcag
    12781 tttgcggtga agccttaccc ttattaagaa ttttaattta aaccccaaac aaggtaataa
    12841 ataaaaatgg ctcgtacaac ccctatttca ctttaccgta acatcggtat cagtgcgcac
    12901 atcgatgcgg gtaaaacaac tactacagag cgtatcttgt tctatacagg tgtaagtcac
    12961 aaaatcggtg aagttcacga tggtgctgca acaatggact ggatggaaca agaacaagag
    13021 cgtggtatca cgatcacatc tgctgcaaca acagcattct ggtctggtat gtcacaacaa
    13081 tatccacaac accgtatcaa cgttattgat actccgggac acgttgactt tactatcgaa
    13141 gtagaacgtt caatgcgtgt acttgatggt gcggtgatgg tttattgtgc agttggtggt
    13201 gttcaaccac aatctgaaac tgtatggcgt caagctaaca aatataaagt gccacgtatc
    13261 gcgttcgtaa acaaaatgga ccgtacaggt gcaaacttct tacgtgttgt tgagcaaatc
    13321 aaaacgcgtt taggtggtaa ctcagttgca ttacaacttc caatcggtgc agaagacagc
    13381 ttcaaaggtg ttgttgattt aatcaaaatg aaagcaatca actggaacga agctgatcaa
    13441 ggtatgacct tcacttatga agatattccg gcagatatgc ttgaagcttg tgaagaacac
    13501 cgtgcaatgc ttgttgaagc agcagctgaa gcttctgaag aattaatgga aaaattcttc
    13561 tctggtgaag aattaactga agatgaaatc aaagcagcat tacgtcaacg tgtattagca
    13621 ggtgaagtaa tccctgtttg ctgtggttct gcatttaaaa acaaaggtgt acaagcaatg
    13681 cttgatgcgg taatcgatta cttaccggca ccaactgata ttcctgcaat taaaggtatc
    13741 aatgaagatg aaactgaagg tgagcgtcac gcaagcgacg atgagccatt tgcttcatta
    13801 gcattcaaaa ttgcaacaga cccattcgta ggtaacttaa ccttcttccg tgtttactct
    13861 ggtgtaatta actctggtga tacagtttac aactcagtaa aacaaaaacg tgaacgtttt
    13921 ggtcgtatcg tacagatgca cgcaaacaaa cgtgaagaga tcaaagaagt tcgtgcgggc
    13981 gatatcgctg cagcaatcgg tttaaaagat gttggtacag gtgacacatt atgtgcaatc
    14041 gatgcaccaa tcattcttga gcgtatggaa ttccctgagc cggtaatctc tgttgcggtt
    14101 gaaccaaaaa ccaaagctga ccaagagaaa atgggcttag ctttaggtcg tttagcacaa
    14161 gaagaccctt cattccgtgt tcacacagat gaagaatctg gtgaaacgat catttcaggt
    14221 atgggtgagt tacacttaga catcatcgtt gaccgtatga aacgtgagtt taaagtggaa
    14281 gcaaatatcg gtaaaccaca agtatcttac cgtgaaacta tccgtactcg tgttaatgat
    14341 gttgaaggta aacacgcaaa acaatctggt ggtcgtggtc aatatggtca cgttgtgatc
    14401 gacttatacc cattagatgc tgaaggtccg ggttatgagt ttgtaaacga gatcaaaggt
    14461 ggtgtaatcc ctggtgaata cattcctgcg gttgataaag gtatccaaga acagcttaaa
    14521 tctggtccgt tagcaggtta cccggtagta gatttaggtg tgcgtttaca cttcggttca
    14581 taccacgatg ttgactcatc tgaacttgcg tttaaacttg ctgcatcatt agcatttaaa
    14641 gcggcgttcg caaaagcaag cccggtatta cttgagccaa tcatgaaagt ggaagttgaa
    14701 actccaccgg attacgtggg tgatgtaatc ggtgacttaa gccgtcgtcg tgcaatggtt
    14761 aacggtcaag aagcgaacga gttcgttgtt aagatcaatg ctgaagttcc actttcagaa
    14821 atgtttggtt atgcaacaga cttacgttca caaactcaag gtcgtgcatc atactctatg
    14881 gaacctttaa aatatgctga agcaccgaaa aacgttgctg atgcaattat tgaagctcgt
    14941 agaaaataat ttgtttaacc tgagccatag caatagggct atggctcatt ttttaggaag
    15001 atattaaagt gtctaaagaa aaatttgaac gtacaaaacc gcacgttaat gtgggtacaa
    15061 tcggccacgt tgaccatggt aaaacaactt taacagcagc aatcactacc gtattagcaa
    15121 aacacttcgg tggtgcagct cgtgcatttg accaaatcga taacgcgcca gaagaaaaag
    15181 cgcgtggtat caccatcaac acttcacacg ttgagtacga tacagcaact cgtcactacg
    15241 cacacgttga ctgcccggga cacgcggact atgttaaaaa catgattacc ggtgcggcac
    15301 aaatggacgg cgctatctta gtagtagcag caactgacgg tccaatgcca caaactcgtg
    15361 agcacatctt attaggtcgc caagtaggtg taccatacat catcgtattc ttaaacaaat
    15421 gcgacatggt agatgacgaa gagttattag aattagttga gatggaagtg cgtgaacttc
    15481 tttcacaata cgacttccca ggtgatgaca ctccaatcgt acgtggttca gcgttacaag
    15541 cgttaaacgg cgtagcagag tgggaagaga aaatccttga attagcaaac cacttagaca
    15601 catacattcc agagcctgag cgtgcgattg ataaaccatt cttattacca atcgaagacg
    15661 tattctcaat ttcaggtcgt ggtacagtag taacaggtcg tgttgagcgt ggtatcatcc
    15721 gcactggtga tgaagttgaa atcgtaggta tcaaagatac agcgaaaaca accgtaacag
    15781 gtgttgagat gttccgtaaa ttattagacg aaggtcgtgc gggtgagaac gtaggtgcat
    15841 tattacgtgg tactaaacgt gaagaaatcg aacgtggtca agtattagcg aaaccgggtt
    15901 caatcactcc acacacagac ttcgaatcag aagtttacgt attatcaaaa gaagaaggtg
    15961 gtcgtcacac tccattcttc aaaggttacc gtccacagtt ctacttccgt acaacggacg
    16021 taacaggtac aatcgaatta ccggaaggtg tagagatggt aatgccgggc gacaacatca
    16081 aaatgactgt tagcctaatt cacccaatcg cgatggacga aggtttacgt tttgcgattc
    16141 gtgaaggtgg tcgtacagta ggtgcgggcg ttgtagctaa aatcatcaaa taattaagat
    16201 tgtttgataa attgaaaagc taaataaaaa ctagaaagag gcatatcgaa aggtatgcct
    16261 cttttgcttt tatgccgatt aagctagcca tatc
//
LOCUS       DANMBQ010000047        16225 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.047, whole genome shotgun sequence.
ACCESSION   DANMBQ010000047 DANMBQ010000000
VERSION     DANMBQ010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16225
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.047"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            24..353
                     /locus_tag="PXE92_001265"
     CDS             24..353
                     /locus_tag="PXE92_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760520.1"
                     /translation="MKKYLFFAFMTLSNVAYPNLDEWYSASDKERREFIAKHFAEETV
                     RSDRNTPYDYAMCTGRMFAKQLTRDEVKDYPLANTKPQYLTRDRRIEIMSNLPREILQ
                     NCAKYIQ"
     gene            complement(389..1141)
                     /locus_tag="PXE92_001266"
     CDS             complement(389..1141)
                     /locus_tag="PXE92_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HDL5760521.1"
                     /translation="MAYKPPFTVTTKMLNLVVEISHKLGTLQLDFERNLHLRKNNRLR
                     SIQASLAIEANSLTIEQVTAIIKGKKVLGHPKDIREVKNAYDAYDEMMHYNPYSIKDF
                     LKAHKFLTADLVNDAGAFRSKDVGIYNFSGQLVHMGARPQFVENLINELFSWAKQDDT
                     PALIKSSVMHYEIEMIHPFSDGNGRMGRLWQNVLLAQWNPLFAWLPIETMVYENQQRY
                     YQMLSLADSQNDSTGFIEFMLEMILETLLKLK"
     gene            complement(1180..2427)
                     /gene="clpX"
                     /locus_tag="PXE92_001267"
     CDS             complement(1180..2427)
                     /gene="clpX"
                     /locus_tag="PXE92_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HDL5760522.1"
                     /translation="MAFEKEPHCSFCGKKRTEVDQLVEGTEGYICNECIEESYALLHG
                     EEEPLIDENQDDEGSFFTNVPTPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRSA
                     LSNHQATNGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGE
                     DVENVIQKLLMKCDFEAEQAERGIVFIDEIDKITRKSESASITRDVSGEGVQQALLKL
                     LEGTVANINPQGGRKHPKGETIPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFAA
                     ALKKDKDRQDLTELFKQVEPEDLVKFGLIPELIGRLPVVTPLQELDEEALIQILTEPK
                     NAIIKQYQALFEMEGVELHFTKDALISIAQKAISRKTGARGLRSIVENLLLDTMYDLP
                     TLNAKKVTIGKGCVENGDKPKVE"
     gene            complement(2427..3020)
                     /gene="clpP"
                     /locus_tag="PXE92_001268"
     CDS             complement(2427..3020)
                     /gene="clpP"
                     /locus_tag="PXE92_001268"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDL5760523.1"
                     /translation="MALVPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLI
                     VAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQAASMGAF
                     LLSAGAKGKRFALPHARIMIHQPLGGARGQATDIQIQAEEILRLKATLTRRMAEHSGQ
                     SYEKVLADTERDNFMSAEEAAEYGLIDKVLTSRSEVA"
     gene            3132..3515
                     /locus_tag="PXE92_001269"
     CDS             3132..3515
                     /locus_tag="PXE92_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HDL5760524.1"
                     /translation="MTLTEIYQKFERCKSWEERYRLLIQLSRLLPKPSEQELAQIAEI
                     EGCESRLWFEFQAEPRKVVAYSDARLMQGILFIVSVALTEKTAEELKGFDLKTMFDEL
                     KISQNLTSTRLNGLGQLQKHIMMNL"
     gene            complement(3619..3695)
                     /locus_tag="PXE92_001270"
     tRNA            complement(3619..3695)
                     /locus_tag="PXE92_001270"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3659..3661),aa:Asp,seq:gtc)
     gene            complement(3784..4539)
                     /locus_tag="PXE92_001271"
     CDS             complement(3784..4539)
                     /locus_tag="PXE92_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5760525.1"
                     /translation="MKKSIYDTPIFFERYQQLRQNPISMNEVVEKPTMFSLLPDLTGK
                     KVLDLGCGTGVHLAHYLTLGAEKVVGLDLSELMLQQAESDLSAHWQKGNDFSLYCLPM
                     ERLNEISEGDFDVVTSSFAFHYIADFSELLAKISQKMTACGTLIFSQEHPIVTCYREG
                     YRWEKNQEKQQVAYRLNYYREEGERDRSWFQQPFKTYHRTMATIVNNLIQGGFEIVQM
                     EEPMLAGQPRWHNEFKDLQHRPPLLFIKAIKQK"
     gene            complement(4599..5594)
                     /gene="trpD"
                     /locus_tag="PXE92_001272"
     CDS             complement(4599..5594)
                     /gene="trpD"
                     /locus_tag="PXE92_001272"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDL5760526.1"
                     /translation="MQALLDKLFANQALAQAESHRFFSEVIKGNVSNEQLAAALIALK
                     LRGETVDEIAGAAKAALENANPFSTPDYPFADIVGTGGDGHNTINISTTSAIVAATMG
                     YKIAKHGNRSVSSKTGSSDVLSHLGINVDVSPETARLALDETNICFLFAPTYHSGFKY
                     AAPVRQALKTRTIFNILGPLVNPAHAKRQLLGVYSPELVKVYAETVKALGYEHTIVVY
                     GAGLDEVAVHGETQVAEIQNGQIDYYTLTPEDFGIERHSLEDLKGGEPAENAEKVTAI
                     LQGKGKLAHIDAVAANVALLMKTFGEDDLKANVQKVKETLESGKALETLRKLSTY"
     gene            complement(5612..5998)
                     /locus_tag="PXE92_001273"
     CDS             complement(5612..5998)
                     /locus_tag="PXE92_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005543439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HDL5760527.1"
                     /translation="MISVYGLKQTLADRRALIADVIFDCMQMSLGVPKQRHALRFDLL
                     DAENFYPPINRSQDFIVIEINLMQGRSEQLKKRLIKGLFSALHTKVGIVPMDVEITIK
                     EQPEHCWGFRGMTGNEATDLEYQAHR"
     gene            complement(5991..6581)
                     /locus_tag="PXE92_001274"
     CDS             complement(5991..6581)
                     /locus_tag="PXE92_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDL5760528.1"
                     /translation="MANILFIDNFDSFTYNLVDQFRELGHQVTIFRNDYPLEDFLAKA
                     ETTENCLVALSPGPGNPAEAGNLLEIIRRLKDKVPMIGICLGHQALIEAFGGKVVHTG
                     TVLHGKVSRIEHDNQAMFSGINNPMLVARYHSLMGDELPAEFIVNAKFEHIVMAIRHK
                     TLPICGFQFHPESILTVQGTKLLKQSVEWLLGEKND"
     gene            complement(6591..8147)
                     /gene="trpE"
                     /locus_tag="PXE92_001275"
     CDS             complement(6591..8147)
                     /gene="trpE"
                     /locus_tag="PXE92_001275"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HDL5760529.1"
                     /translation="MPQLTITQTELPYFADTTRVYYALCGERPHTLLLDSAEIQSKNS
                     VKSLLFAKSAVHIFCEDQTVTFHALTPNGEAVLPLIANALSLLNPAPTCKFLDKNDRL
                     QAIFPTISNQLDEDSKLKTTTVFDGLRTVSQLFADSTSPIYLGGLFSYDLVANFIPME
                     NISLQDDGLSCPDYTFYLAEQLVTIDHQTETAVLNTFCFEPNEQTNLNQQAVEFTQKL
                     ANLSHIELPLANQTATSEATANIEDEDFKAIIRKLKHHINIGDVFQIVPSRRFSLPCP
                     NTLASYKQLKINNPSPYMFYMQGENFTLFGASPESALKYSQANRQLEIYPIAGSRPRG
                     FDEQGNIDPELDSRLELELRLDQKELAEHLMLVDLARNDVARVSESGTRRVVDLMQID
                     RYSQIMHLVSRVIGTLRKDLDALHAYQACMNMGTLTGAPKIKAMQLIYQVEQQKRHSY
                     GGAVGYLTSDGNLDTCIVIRSAFVQNGIAYVQAGCGEVLDSDPQLEADETRHKARAVL
                     KAIGQVNAKA"
     gene            8289..8906
                     /locus_tag="PXE92_001276"
     CDS             8289..8906
                     /locus_tag="PXE92_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HDL5760530.1"
                     /translation="MTQFFYIHPDNPQQRLINQAVEIIRNGGVIVYPTDSGYALGCAM
                     GDKHAMDRIVAIRKLPENHNFTLVCSDLSELSIYALVNNQAYRLIKNNTPNPYTFILP
                     ATKELPRRLMTKRKTVGIRVPDNAIALALISALGEPILSCSLMLPETEMTESDPDEIR
                     DHLQNRVDLIIHGGYLGQQPTTVVDLTDDVPVIIREGSGDPTSFN"
     gene            9052..10119
                     /gene="rluB"
                     /locus_tag="PXE92_001277"
     CDS             9052..10119
                     /gene="rluB"
                     /locus_tag="PXE92_001277"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HDL5760531.1"
                     /translation="MTTFQKKSTATFRADKRGESRPSFKKEEQKSERKFGKTSEKPPR
                     PTSKPLTQRIAKKVEKTTASEVASQEKKAKVVGEKLQKILARAGQGSRRELEEIIAAG
                     RVSVDGKMATLGDRVQVSSSTKIRIDGHLVNLMPAQKEICRVLMYYKPEGELCTRSDP
                     EGRSTVFDRLPRLSGARWIAVGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVR
                     VFGNIDDAMLQRLRKGVQLEDGPANFKQIKVVGGTGLNQWFDVTLTEGRNREVRRLWE
                     SQGVEVSRLIRIRYGNIKLDKGLPRGGWEEMGLEQVNYLRELVGLPPETETKVEVGVN
                     RRRTNIRQIRKAVKQHQKYRG"
     gene            10185..11957
                     /locus_tag="PXE92_001278"
     CDS             10185..11957
                     /locus_tag="PXE92_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDL5760532.1"
                     /translation="MSWDIVATLAVTGIAVFLFATEKMRMDVVAILVLCSLVLLGQVD
                     TKSALSGFSNSATVTVTAMFVLAAGLQNSGALDSVGSLLAKVKSPWLFLLVLCGVNAA
                     VSPFVNNTAVVAVLIPIVIAAAQNIKMAPSKALIPLSFSSQMAGVCTLIGTSTNLLVN
                     AIAQKQGHSGFGMFEFAPLGIIFLVVGVAYLLVTSRFLLPESHLQLEDGEGFGKYVSE
                     LKVNKDSVLIGKSTFESGLNEEFNLFTIGVLRDGERLSTPSHQVLQKHDILLLRGESE
                     NLAKVREKYGLHHVVYGRRENDEDNLDEDLMVAEVMISPISRWIGGTIPILQQRWNKN
                     ATVLGIQRQSKVIRERLRTTAFKMGDILLLTLPKEDMETLRQDKDFIVLSSDLVKTEE
                     SWKSKFALGVMVLVVATAALGWVPISVSALIGAVAMCVAGCLTAEEAYQSIDWKIILV
                     LAGLLPLGEAMANSGAAQFIVDNTLGKVGEFGPLVVLAVLYLLTMVLTEFMSNAGTAV
                     LLTPIAVSTAKMLGVDASPFIIAVMFAAATSFMTPVGYQTNTMVYGAGGYKFTDFIKI
                     GLPLNVIYWILGIVLIPIFFPFNP"
     gene            complement(12047..16198)
                     /locus_tag="PXE92_001279"
     CDS             complement(12047..16198)
                     /locus_tag="PXE92_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5760533.1"
                     /translation="MNKIYRIVWNHAKRTWIVASELSRSANKSNATNTSLTTNIIKLS
                     TLSLALSAGFASAATYSPTYGTIPDNNPQTSIAIGDGSKVNSTLVSTITGLEGNSGKV
                     STALGYNTTATADFSTALGGFANASFASTAVGGQATADKRSVAVGYNATAMGLREVFI
                     GDHAGLNHSNSTEYNIGIGYSASSNVTGNNTISIGNTAGDGTSGSHNIAIGTYANAKL
                     AGPTTNVTSDDNIAIGNSALANGVNNYKTTAATGETVIGKATAVGSHANATGIVSSAY
                     GAEANATAIHSTAIGAKSQANGDNSTAIGYEAKTSGHGATSLGYYANATANLTTAVGT
                     NAGATSDYASAFGREANASGGSATALGNRATASGAASVALGVSAKATNQRTIAIGESS
                     NASAFNATAIGRNATAEHTDSIALGSNSVTAIAIPTTNATVNGITYSDFAGTNPIATV
                     SIGAEGKERTITNVAAGRISLSSTDTINGSQLYLTQQAIGNVAATTANILGGGAAVTE
                     NGNITFPTYALVNGTPDADKEGKQGRYTTVSAALSALNTAVISPLTFAGDTGTNFERH
                     LGSTVKIKGGSTGILTENNIGVVADGNSTLTIKLAEKVNLGANGSLTTGDTVVNNTGI
                     TIANGVADKPVSLTKSGLDNGGNKIANVAAGDVDTDAVNVSQLKQAISKFATHYVSIS
                     DDGIQRANYDNSGSSGVNPMAIGVATSANGELATALGSEAEANGERTTAVGPRATADG
                     MNATSIGYNANANATNALAVGSAANANADTSTAIGTASTATATRATALGSKSEATGEN
                     STAVGYEASSIGADSLAAGYNANASGTQSTALGNSANAGGIWSTSVGRNANAAGSSAI
                     ALGNSANAAGVASIALGVSSQATTTAAVALGQNAKATHQGSVALGTNSETVATVATKS
                     ATLNGNTYTFAGTTPSSTVSIGSVGNERTLTNVAAGRILDSSTDAINGSQLYAAYTEI
                     DGLNTKVNELSNGALTFVDDAGTEIVRKLGTSLNVKGGADATILTDNNIGVVATDANT
                     LTVKLAKDIDLTPAGSVAVGNSKLNNNGLTINNGPSVTMTGVDAGKLKITNVADGDIS
                     PISADAVNGSQLYDTANTIATALGGNSSVNANGAVSAPSYTVVDGAPTNEVSKTVNNV
                     GSAITALNDAVTSPLTFAGDTGTPSQRKLGSTVTVKGGVSNESQLTDNNIGVISNGNG
                     SLTVKLAKDIKVNSVTAQTVTANIAVADTVKTGDTTIDTNGLTIVGGPSITKTGINAA
                     GTKVTNVKAGTEDTDAVNFSQLKATEKNINNKINNIDSKVNKVDKRLRAGIAGATATA
                     GLPQAYLPGKSMLATAGDTYRNEAAIAVGYSRISDNGKVIYKLTGNSNTRGDFGGSIG
                     MGYQW"
BASE COUNT         4464 a         3297 c         3469 g         4995 t
ORIGIN      
        1 ttatgtattt atttggatag attatgaaaa aatatttatt ttttgctttt atgacattaa
       61 gtaatgttgc ttatcctaat ttagatgagt ggtactcagc ttcagataaa gagcgaagag
      121 aatttatcgc aaaacatttt gcagaagaaa cagtaagaag tgatagaaat acaccgtatg
      181 attatgctat gtgcactggt agaatgtttg ctaaacaact gactcgagat gaagtcaaag
      241 actacccttt ggcaaacact aagccgcaat atttaacccg tgatagacgg attgagatta
      301 tgtctaattt acctcgtgaa atattacaaa attgtgctaa atacatacag taattttatg
      361 agtaacacca ctttggaatt aagtggtgtt attttaattt taataatgtc tctaaaatca
      421 tctccaacat aaactcaata aagccggtag aatcattttg gctgtctgcg agagaaagca
      481 tttgataata acgttgttga ttttcgtaaa ccattgtttc aatcggcaac caagcgaaaa
      541 gtgggttcca ttgtgctaaa aggacatttt gccataatcg acccattctg ccgtttccat
      601 cactaaaggg gtgaatcatt tctatttcat agtgcataac cgagctttta atgagtgcag
      661 gtgtatcatc ttgtttagcc caagagaaca actcattaat caaattctct acgaattgag
      721 gacgagcccc catatgcaca agttgcccac tgaaattata aatgccgaca tcttttgaac
      781 gaaaagcccc tgcgtcattt actaagtcag cagtaagaaa cttatgtgct ttgagaaaat
      841 ctttaatcga gtaaggatta tagtgcatca tttcatcgta agcgtcatag gcatttttga
      901 cttcacgaat atctttgggg tgtccgagaa cctttttgcc cttaatgatt gcggtaactt
      961 gctcaatcgt taatgaattt gcctcaatag ctaaagaggc ttgaattgat ctcaagcggt
     1021 tattttttct aagatgtaaa ttacgctcaa aatccaattg tagcgttccc aatttatgag
     1081 aaatttctac aaccagattc agcattttag tggtaactgt aaaaggtggt ttataagcca
     1141 ttttgcaata atcctaaaaa attaaaccgc ttgtcattgt tactccacct tcggcttatc
     1201 gccgttttca acacagcctt tgccgatggt gacttttttc gcattgaggg ttgggagatc
     1261 gtacattgtg tcaagtaata agttctcgac aatagaacgt aacccacgag ccccggtttt
     1321 gcggctaatc gctttttggg caattgaaat taatgcatct ttggtgaagt gcaattcaac
     1381 gccttccatt tcgaataagg cttgatattg cttgatgatc gcatttttcg gctcggttaa
     1441 gatttgaatc agagcttctt cgtccaattc ttgcagcgga gtcaccaccg gtaaacgccc
     1501 gattaattca ggaattaagc cgaatttgac taaatcttcc ggttcaactt gtttgaatag
     1561 ctcggttaaa tcttggcgat ctttatcttt tttcaatgcc gctgcaaaac cgataccacc
     1621 ttgagtgttg gtacgggctt ccacgatttt atctaaaccg gcaaaagcac cgccgcaaat
     1681 aaagagaatt ttggaggtgt ccaccggaat ggtttcgcct ttcgggtgtt tgcgaccgcc
     1741 ttgtgggtta atgttcgcca ccgtgccttc aagtagtttt aataaggctt gttgaacacc
     1801 ttcgcccgat acatcacggg taatggatgc actttccgat ttacgggtga ttttgtcgat
     1861 ttcatcaata aaaacaatgc ctcgttccgc ttgttcggct tcaaaatcgc atttcattaa
     1921 taatttttga atcacgtttt cgacatcttc tcccacatag cctgcttggg taagggtagt
     1981 agcatcagct accgcaaaag gtacgtttaa acggcgggca agggtttctg ccaacaaggt
     2041 tttaccgcta ccggtcggcc cgattaataa aatattactt ttacctaact ctacgccatt
     2101 agtggcttga tggtttgaca atgcacttct taagcgtttg tagtggttat aaacggccac
     2161 cgaaagcact tttttcgcgt gttcttgacc gatgacataa tcatctaaat gagcgtgtaa
     2221 ttcgtgaggt gtcggcacat tggtgaaaaa actgccttca tcgtcttggt tttcatcaat
     2281 taacggctct tcttcaccgt gtaataaggc gtaggattcc tcgatacatt cattacaaat
     2341 atagccttcc gtgccttcga ctaattgatc gacttcggta cgttttttac cgcaaaaact
     2401 acagtggggt tctttttcaa atgccattac gccacctcac tgcgagaagt taatactttg
     2461 tcgattaagc catactcagc ggcttcttcc gcagacataa aattatcacg ctcggtatcg
     2521 gctaacactt tttcatagct ctgaccgctg tgttctgcca tacggcgggt aagggtagct
     2581 ttcaagcgta aaatttcttc cgcttgaatt tgaatatcgg ttgcttgacc tctcgctcca
     2641 cctaaaggtt ggtgaatcat aatacgagcg tgcggcagag caaagcgttt accttttgcc
     2701 ccggctgaaa gcaaaaatgc ccccattgaa gccgcttgcc ctgtgcaaag ggttgctaca
     2761 tcgggtttga tgaagttcat tgtatcgtaa attgccaagc ctgctgttac cacgccaccc
     2821 ggtgagttaa tgtataaata gatgtctttt tccggatctt cggcttctaa aaacagaagt
     2881 tgtgccacaa tcaggtttgc catattgtct tccacctgac cgtttaaaaa aataatacgt
     2941 tcttttaata aacgtgaata aatgtcgtaa gaacgttcgc cttttgaggt ctgttccacc
     3001 accattggga ctaatgccat tttgttttcc tctgtcgtaa tacaaaatct cgctattcta
     3061 gcaaattttc agaaaatcat taacaacaag cggtcagatt gttaaaatct tttgcaaatg
     3121 atgaggaaat tatgacatta acagaaattt accaaaaatt tgaacgttgt aaatcgtggg
     3181 aagaaagata ccgcttgtta attcagctaa gtcgcttgtt accaaaacca agtgagcaag
     3241 agttggcaca aatagcggaa attgagggct gtgaaagccg tttatggttt gaatttcaag
     3301 ctgagccacg aaaagtagtg gcatatagcg atgcccgttt aatgcagggg attttattta
     3361 ttgtgagtgt agctttaact gaaaaaacgg cagaagagct gaaaggcttt gacttaaaaa
     3421 cgatgtttga tgagctaaaa atttcacaaa atttaaccag cacaaggtta aatgggttgg
     3481 gtcagttaca gaaacatata atgatgaatt tgtaattcac cctcgcccct tgtgggagag
     3541 ggtgaataaa atccgcagga ttttattcgg gagaggggaa tataaaaaac ctctgatttc
     3601 tcagaggctt aaatttgttg gcggaacgga cgggactcga acccgcgacc ccctgcgtga
     3661 caggcaggta ttctaaccag ctgaactacc gctccatact ggtgctaaaa taatagtggt
     3721 ttcctcaaca ttgagcaaat agtttttgca aaatagtgtt taattggttg taaaataacc
     3781 actttatttc tgcttgatcg ccttgataaa cagcaacggc ggacggtgct gtaaatcttt
     3841 aaattcattg tgccaccgag gttggcctgc cagcattggt tcttccattt gcacaatctc
     3901 aaacccgcct tgaataaggt tattcacaat ggttgccatt gtgcggtggt aggttttaaa
     3961 gggttgttga aaccaacttc tgtcccgttc gccctcttcc cgataatagt tcaagcggta
     4021 agcaacttgt tgtttttctt ggtttttctc ccaacgatag ccttctcggt aacaggtgac
     4081 aatcgggtgt tcttgcgaga aaatcagcgt gccacaagca gtcatttttt gcgaaatttt
     4141 tgcaagtagt tcggaaaaat cagcaatata atgaaacgca aaagagctgg ttactacatc
     4201 gaaatcgccc tcgctgatct catttaatcg ctccatcggc aggcagtaaa gggaaaaatc
     4261 gttgcctttt tgccaatgag cagaaagatc gctttctgcc tgttgtagca ttaattcaga
     4321 taaatccaac cccaccactt tttctgcacc gagcgttaaa taatgggcta aatgaactcc
     4381 tgtgccacaa cctaaatcca gcactttttt gccggttaag tctggcagta gagagaacat
     4441 tgttggcttt tccaccactt cattcatact tattggattt tgtcgaagtt gttggtaacg
     4501 ctcaaagaaa atcggagtgt cgtaaatgct ttttttcact taatagcctt taaacaaata
     4561 taaaataagg cgggttaaaa cccgccacta cgatatgatt agtaagtcga taattttcgc
     4621 aaagtttcta acgcttttcc actctcaagc gtttctttta ctttttgcac attggctttt
     4681 aaatcatctt ctccaaaggt tttcattaat aatgcgacat ttgctgccac cgcatcaata
     4741 tgagccagtt taccttttcc ttgtaaaata gcggttactt tttcggcatt ttctgcaggt
     4801 tcaccgcctt tgagatcttc taacgaatgg cgttcaatgc cgaaatcttc cggcgttaag
     4861 gtgtaatagt cgatctgtcc gttttgaatt tccgcaacct gcgtttcgcc gtgaacggca
     4921 acttcatcta aacctgcacc gtataccaca atagtgtgtt cgtaacctaa ggcttttacg
     4981 gtttcagcat agactttcac taactcaggg gagtacacac cgagtaattg gcgtttagcg
     5041 tgagccgggt ttaccaacgg ccctaaaata ttgaaaatcg tgcgggtttt taaggcttgg
     5101 cgaacagggg cggcatattt gaatccgctg tggtaggttg gggcaaacaa aaagcagatg
     5161 ttggtttcat ctaaagcaag gcgtgccgtt tcaggtgaaa cgtcaacatt aatacctaaa
     5221 tggcttaata catcgcttga gccggtttta cttgatacgc tacggttgcc gtgtttggca
     5281 attttatagc ccattgtggc ggcaacaatc gcacttgtgg tagaaatgtt gatggtatta
     5341 tgcccatcgc cacctgtgcc gacaatatcc gcaaaagggt aatcaggcgt tgagaacgga
     5401 ttggcatttt caagtgcggc ttttgcagca cctgcaattt catcaacggt ttcgccacgc
     5461 agttttagag cgattaaggc agcagcaagt tgttcatttg atacattgcc tttaataact
     5521 tcactaaaaa aacggtgaga ttccgcttgg gctaaggctt ggttggcgaa taatttatct
     5581 aaaagtgctt gcatagtctc ttccttttta attagcgatg tgcctgatat tccaaatcgg
     5641 ttgcctcgtt gccggtcatt ccacgaaagc cccagcaatg ctctggctgt tctttaatgg
     5701 tgatttcaac gtccattggc acaatgccga ctttggtgtg taaggcacta aatagtcctt
     5761 taattaagcg ttttttgagc tgttcgctcc gcccttgcat caggtttatt tcaatcacaa
     5821 taaaatcttg gctacggtta attgggggat agaaattttc cgcatccaat aagtcaaaac
     5881 gcaaagcgtg gcgttgtttt ggtacgccaa ggctcatttg catacagtca aaaatcacgt
     5941 ctgcaatcag ggctctgcgg tctgctaagg tttgttttaa tccatataca ctaatcattt
     6001 ttttctccta ataaccattc caccgactgc ttaagtaatt ttgtgccttg cacggttaaa
     6061 atggattccg ggtggaactg gaaaccgcaa atcggtaagg ttttgtggcg aattgccatc
     6121 acaatatgtt caaatttcgc attaacgata aattctgccg gtaattcatc gcccattaat
     6181 gagtgataac gagcgacaag cattggattg ttaatgcctg aaaacatcgc ttggttatcg
     6241 tgttcaatac gagaaacttt gccgtgcaat actgtgccgg tatgcactac tttgccgcca
     6301 aaggcctcaa ttagagcttg atgtcctaaa caaatgccaa tcatcggtac tttgtctttc
     6361 agacggcgaa taatttccaa taaattgcct gcctcagccg gattacccgg gccgggggaa
     6421 agggcaacca aacaattttc ggtggtttca gctttggcta aaaaatcctc aagcggataa
     6481 tcattgcgga aaatcgttac ctgatgccct aattcacgaa attgatcgac caagttatag
     6541 gtaaaagagt cgaaattatc aataaaaaga atatttgcca tagtttgtcc ttatgctttt
     6601 gcattcacct gcccaatcgc ttttaacacc gcgcgtgctt tatggcgtgt ttcatctgcc
     6661 tctaattgtg gatcggaatc cagcacctca ccacaaccag cttgcacata ggcaatgcca
     6721 ttttgaacaa aggcggaacg gatcacgata caggtatcta aattgccgtc tgaggttaaa
     6781 tagcccaccg caccgccgta gctatggcgt ttttgttgct cgacttggta gatcagttgc
     6841 attgccttaa ttttcggagc accagttagc gttcccatat tcatacaagc ttgataagcg
     6901 tgcagagcgt caagatcttt tctaagtgtg ccgatcacac gagaaactaa gtgcataatt
     6961 tgcgaatagc ggtcaatttg cattaaatca accacacggc gagtgccgga ttcgctcaca
     7021 cgagccacat cattgcgggc aagatcgact aacattaaat gttcggcaag ctctttttgg
     7081 tctaaacgca gttctaattc caaacgggaa tctaattcag gatcgatatt accttgttca
     7141 tcaaaaccgc gtgggcgaga gccggcaatc gggtaaattt ccaactggcg gttggcttgc
     7201 gaatatttca acgcactttc aggcgacgcc ccaaacagag tgaaattttc gccctgcata
     7261 tagaacatat acgggcttgg attgttgatt ttgagctgtt tatagctggc aagagtattc
     7321 gggcaaggca agctgaaacg gcgagagggc acaatttgga acacatcacc gatattaata
     7381 tggtgtttga gtttgcggat aatcgctttg aaatcttcat cttcaatatt ggcggttgcc
     7441 tcactcgttg cggtttggtt cgctagaggc agctcaatat gtgacagatt tgcaagtttt
     7501 tgcgtaaatt cgaccgcttg ttggttcaaa ttggtttgtt cattcggttc aaaacagaag
     7561 gtgtttagca ccgcagtttc ggtttggtgg tcgattgtaa ccagttgctc tgctaaatag
     7621 aaagtgtaat ctgggcaact taagccatca tcttgcaggc tgatattttc catcggaata
     7681 aaatttgcca ccaaatcgta gctaaataat ccgcccaaat agataggcga tgtggaatca
     7741 gcaaacagtt ggctcaccgt tcttagcccg tcaaacacgg tggtggtttt gagcttgctg
     7801 tcttcatcta actggttgct gatggttggg aaaatcgctt gcaagcggtc gtttttgtct
     7861 aaaaatttgc aagtcggagc agggtttaac aggctcaatg cgtttgcaat caaaggtaaa
     7921 accgcttctc cgtttggggt taaagcgtgg aaagtcacgg tttgatcttc acagaaaata
     7981 tgcactgccg atttcgcaaa cagcaaactt tttacactgt ttttactttg aatttccgct
     8041 gaatctaata atagcgtatg tgggcgttcg ccgcataatg cgtaataaac acgggtcgta
     8101 tcggcaaaat agggtaattc tgtttgagta atcgttaatt gaggcatagc aaattcctat
     8161 tcaatttttc gtactattaa actagtacat taaaaagaag tcaagcaatt attccagata
     8221 attatgcgag cttgggcgaa cttggtgtat aattagccca atttttagaa agtcgaaggc
     8281 ttgagactat gacacaattt ttttatatcc accccgacaa cccacagcaa cgcttaatta
     8341 accaagcggt agagattatt cgaaacggtg gcgtaattgt ttaccctacc gattcaggct
     8401 atgctctcgg ttgtgcaatg ggcgataagc acgcaatgga tagaattgta gcaattcgta
     8461 aattgccgga aaatcacaat tttaccttag tttgtagtga tttatccgag ctttctatct
     8521 acgcgttggt caataatcaa gcctatcgct taattaagaa taataccccg aatccttata
     8581 cttttattct gccggcaact aaggaacttc ctcgcaggct gatgacaaag cgtaaaacag
     8641 tggggattcg tgtgccggat aatgcgatcg cattggcgtt aatttccgcc ttaggtgagc
     8701 cgattctttc ttgctcgtta atgttgccgg agacggaaat gaccgagtca gaccctgatg
     8761 aaattcggga tcatttgcaa aatcgggtgg atttaattat ccacggtggt tatttagggc
     8821 agcagcctac aacggtagtt gacttaaccg atgacgtgcc ggttattatt cgagaaggat
     8881 cgggcgatcc aacatcgttt aattaaattg atgttgtatg attaatatat agaattatgc
     8941 gtaggggggc tgtgccagtc cgtattaata tcgttatttg gacaggcaca ggacctgtcc
     9001 ctacaatgaa aatcaaattc agacgcttgt gaaagcgaca aaaggaacct tatgacaact
     9061 tttcaaaaaa aatcaactgc gactttccgt gcagacaaac gtggtgaaag ccgtccctca
     9121 tttaaaaaag aagagcaaaa atctgaacgc aaatttggta aaacgtcaga aaaaccacca
     9181 cgtccaactt ctaagccatt aacgcaaaga attgcaaaaa aagtggaaaa aacgaccgct
     9241 agtgaagtgg catctcaaga gaaaaaagcc aaagtagtag gtgaaaagct acaaaaaatc
     9301 ttagcgcgag cagggcaagg ttctcgccgt gaattagaag agattatcgc tgctggacga
     9361 gtgagcgtgg acggtaaaat ggctactctt ggtgatcgtg tgcaggttag ctcatcgact
     9421 aaaatccgca ttgacggaca tttagttaat ttaatgccgg cacaaaaaga gatctgccgt
     9481 gtattaatgt attacaaacc ggaaggggaa ctttgcaccc gttccgatcc ggaaggacga
     9541 tccaccgtat ttgaccgctt gcctcgttta agtggcgctc gttggattgc ggtcgggcgg
     9601 ttagatatta acacctcagg cttattattg ttcactaccg atggcgaatt agccaaccgt
     9661 ttaatgcacc caagccgtga agtcgaacgt gaatattcgg tgcgtgtgtt cggcaacatt
     9721 gacgatgcga tgttacaacg cttacgcaaa ggcgttcagt tggaagacgg accggcaaac
     9781 tttaaacaaa ttaaggttgt gggtggcaca ggcttgaacc aatggtttga tgtgacttta
     9841 accgaagggc gtaaccgtga ggttcgccgc ctgtgggaat cgcaaggggt agaagtcagc
     9901 cgtttgattc gtatccgtta cggcaatatc aaattagata aaggcttacc tcgtggcggc
     9961 tgggaagaaa tgggcttaga acaagtcaat tacttgcgtg agctggtagg gttaccgccg
    10021 gagactgaaa ctaaagtgga agtgggggta aaccgccgcc gaaccaatat ccgtcaaatt
    10081 cgtaaagcgg taaaacaaca tcaaaaatat cgtggctaaa caccatcttt ggggctgcat
    10141 tagttctgct aatgcagcta ttttctttca aaaaaggagc atttatgtct tgggatattg
    10201 ttgcaacatt ggcggtcact gggattgccg tatttttatt tgcaactgaa aaaatgcgaa
    10261 tggacgtagt tgcgatttta gtgctgtgtt cattagtatt attagggcag gttgatacca
    10321 aatctgctct gagtggattt tcaaactcag ctactgtaac cgtaactgca atgtttgtat
    10381 tagctgctgg tttacaaaat agtggtgctt tagatagtgt aggcagttta cttgctaagg
    10441 taaaatctcc ttggttattc ttgcttgtac tctgtggcgt aaatgctgct gtttctcctt
    10501 ttgtgaataa tacggcagtg gtcgcagtat taattccgat tgtgattgcc gcagcacaga
    10561 atataaaaat ggctccttcc aaagccctta ttccgttatc attttcttct caaatggcag
    10621 gtgtttgtac actgatcggc acttccacta atctattagt taatgcaatc gctcaaaagc
    10681 aagggcattc cggtttcggt atgtttgaat ttgccccttt ggggattatt tttttagtgg
    10741 ttggggttgc ctatttatta gtgaccagcc gtttcttatt acccgaatca catttgcaac
    10801 ttgaagatgg tgaggggttt ggaaaatatg tttctgaact taaagtaaat aaagactctg
    10861 tattaattgg caaaagtaca tttgaatcag gattaaatga agaatttaat ctatttacta
    10921 ttggtgtttt gcgtgatggg gaaagattat cgacaccgag tcatcaagta ttgcaaaaac
    10981 atgatatttt attgttgcgg ggtgaatcgg aaaatttagc aaaagtacga gaaaaatatg
    11041 gattgcacca cgttgtgtat ggacgccgtg agaatgatga agataatctg gatgaagact
    11101 tgatggtggc tgaagtgatg atttctccta tttctcgttg gataggaggg actattccta
    11161 ttttacaaca gcgttggaat aaaaatgcaa cggtgttagg cattcaacgc caaagtaaag
    11221 taattcgtga gcgtttacgc accactgctt ttaaaatggg ggatatttta ttactcacat
    11281 taccaaaaga ggatatggag acgttacgcc aagataaaga ctttattgtg ttatcttctg
    11341 atttagtcaa aacggaggaa tcgtggaaaa gtaaatttgc tttaggggta atggttttgg
    11401 tggtggcaac agcagcctta ggctgggttc ctatttcagt gagtgcctta attggtgcag
    11461 ttgcgatgtg tgttgctggt tgtttaacgg ctgaagaagc ctatcaatct attgactgga
    11521 aaatcatttt agtcttagct ggattactgc cattaggtga agcgatggca aatagtgggg
    11581 cggcgcaatt tattgttgat aacacgcttg gtaaagtagg ggagttcggg cctttagtgg
    11641 tgttagctgt attatattta ctgacaatgg tgttaaccga atttatgagt aatgcaggga
    11701 ctgccgtgtt gcttacgcct attgcggttt ctaccgctaa aatgttaggg gtagatgctt
    11761 ccccattcat tattgccgta atgtttgcgg ctgcgaccag ctttatgacc cctgttggct
    11821 atcaaaccaa cacgatggta tacggtgcag gtggctataa attcacagat tttattaaaa
    11881 ttggtttacc gctaaatgta atctattgga ttttagggat agtattaatt ccgattttct
    11941 tcccttttaa tccataattg atagataatt atagaaaaaa ggtttacaga tcagaaactc
    12001 tgtaaacctt ttttattcag caataaatca attttctatt ggaaaattac cattgataac
    12061 ccatgccaat actaccacca aagtcgcctc tggtattgct gttaccagtt aatttataga
    12121 taaccttccc gttatctgaa atccgagaat aacctactgc gattgcagct tcattacggt
    12181 atgtatctcc agccgttgct aacatacttt tacctggtag atatgcttgc ggtaaacctg
    12241 cggttgcagt tgcaccagca ataccagcgc gtaaacgttt atcaactttg tttacttttg
    12301 aatcaatatt attgatctta ttattgatat ttttttctgt tgcttttaat tggctaaagt
    12361 taactgcatc agtatcttca gttcctgctt ttacgttagt cacttttgtt cctgctgcat
    12421 taatacctgt tttagttata ctcggtcccc ctacaatagt taatccatta gtatcaatgg
    12481 ttgtatcacc agtcttaaca gtatcggcta cagcaatgtt agctgttact gtttgagctg
    12541 tgacagaatt aactttaata tctttagcta atttaaccgt taatgaacca ttaccatttg
    12601 aaataacccc gatattatta tcagttagtt gtgattcgtt agatacccca ccttttactg
    12661 taacagtaga acctaattta cgttgagatg gcgtgccggt atcacctgca aatgttagtg
    12721 ggctggttac tgcatcattt aacgcagtaa ttgcagagcc tacattattg accgttttac
    12781 taacttcatt tgtaggagcg ccatcaacca cagtatagct tggggctgaa acagcaccat
    12841 ttgcatttac acttgaatta ccacctaaag cggtagcaat agtatttgcc gtatcgtaaa
    12901 gttggctacc attaactgca tctgctgaga taggtgaaat atcaccatca gctacattag
    12961 ttatttttaa tttgccagca tcgacacctg tcattgtgac acttgggcca ttattaatgg
    13021 ttaagccgtt gttatttagt tttgaattac caacagctac ggagccggca ggagttaaat
    13081 caatgtcttt cgctaattta actgttaatg tgttagcatc tgttgccact acaccgatat
    13141 tattatcagt caatatggtt gcatcggccc cacctttaac attcagagaa gtacctaatt
    13201 tacgaacaat ttcagtacca gcatcatcta caaaagtaag tgctccatta cttaactcat
    13261 tcactttcgt gtttaaacca tcaatttcgg tataagcagc ataaagttgt gaaccgttga
    13321 tagcatccgt tgatgagtcc aaaatacgac ctgctgcaac attcgttaaa gtacgttcat
    13381 tgcctacaga accaatactt acagttgagc ttggcgtagt acctgcaaat gtgtatgtat
    13441 tgccatttag cgttgcactt tttgttgcaa ctgtggctac tgtttcagag ttagtaccta
    13501 atgcaacaga accttggtgt gttgcttttg cattttggcc aagagccact gcagcagttg
    13561 ttgttgcttg tgatgaaaca cctaatgcaa tagaagctac accggctgca tttgcactat
    13621 tacctaaagc aatcgcagag ctacctgcag cattggcatt tctacccaca gaagttgacc
    13681 atattccacc tgcattagca gagttaccta aagcggttga ctgtgtaccc gaagcatttg
    13741 cgttatagcc tgcagcaaga gaatctgcac cgattgaact tgcttcataa cctacagcgg
    13801 ttgaattttc accggtagct tcagatttag agcctaatgc agttgcacgg gtagctgtcg
    13861 ctgttgaagc tgtaccaata gctgttgagg tatcagcatt tgcattggct gcagaaccaa
    13921 ccgcgagggc atttgttgca tttgcattcg cattgtagcc tatagaagtg gcattcatac
    13981 catcagctgt tgcgcgagga ccaactgcag ttgtacgttc accgtttgct tctgcttcag
    14041 agcctaatgc ggttgccagc tcaccattag cacttgttgc aacgccgata gccattggat
    14101 taacaccgct agagcctgaa ttatcatagt tagcacgttg aatgccatca tctgaaatac
    14161 taacataatg agttgcaaat ttgctgatag cttgtttgag ttgactgaca ttgaccgcat
    14221 cagtatctac atcgcctgcg gcaacattgg cgattttatt accgccatta tctaagccag
    14281 atttagtaag acttaccggt ttgtctgcaa cgccgttagc gatggtgata cctgtattgt
    14341 taacaacggt atcacctgtt gttaatgaac cattagcgcc taagttaact ttttctgcta
    14401 attttatggt taaagtacta ttgccatcag ctacaacacc aatattattc tcggttaata
    14461 tgcctgtaga tccgcctttg atcttgactg ttgaacctag atggcgctca aaattagttc
    14521 ctgtatcacc ggcaaaggtt aacggactga tcaccgctgt gtttaatgcg cttagtgctg
    14581 cagaaacagt agtgtatctc ccttgtttgc cttctttatc tgcatctggt gtgccattca
    14641 ctaaagcgta ggttgggaaa gtgatatttc cattttcagt aacagctgcc ccaccaccta
    14701 agatatttgc ggttgttgca gcaacattac ctatagcttg ttgtgttaaa tataattgtg
    14761 aaccgtttat ggtatctgta gagcttaaag atatacgtcc tgcagcaaca ttggtgatag
    14821 ttctctcttt gccttccgcc ccaatactta ctgtagcaat tggatttgtt ccagcaaagt
    14881 cactatatgt aataccattt acagttgcat ttgtagttgg tatggctata gctgtaactg
    14941 agttgctacc tagcgctatc gaatcggtat gttcagcagt ggcatttcga cctatagcgg
    15001 ttgcattaaa ggcggaagca tttgatgatt ctccgattgc aattgtgcgt tgatttgttg
    15061 ctttagcgct tacccctagt gcaacagaag ccgcgcctga tgcagtagca cgattgccta
    15121 aagcggttgc agaacctcca cttgcattgg cttcacgacc aaatgcagaa gcataatcgc
    15181 tggttgcacc cgcattagta ccaacagcag tagttaaatt tgctgttgca tttgcataat
    15241 aacctaatga ggttgcaccg tggcctgaag tcttcgcttc ataaccaatt gctgttgagt
    15301 tatcgccatt tgcttgagat tttgcaccaa ttgctgtgga gtgaatagct gttgcgttag
    15361 cttcagcacc ataggcggag ctaacaatac cagttgcatt ggcatgacta cctacagcag
    15421 ttgcttttcc tattaccgtt tctcctgttg ctgctgtagt tttgtaatta ttaacaccat
    15481 ttgcaagagc ggaattaccg atggcgatat tatcatcact ggttacattt gtagtaggtc
    15541 ctgctagttt tgcattagca taagtaccaa ttgcaatatt gtggctacca ctagtaccgt
    15601 ctccagcagt attaccaata gaaatcgtat tgtttcctgt tacattagag ctagccgaat
    15661 aaccaatacc aatattgtat tctgtgctgt tagagtgatt taatccggca tgatcgccaa
    15721 taaaaacttc acgtaagccc attgcggttg cattgtaccc tactgctacg gaacgtttat
    15781 cggcagtggc ttgcccacca acagctgttg aagcaaaact agcgttagca aagcctccta
    15841 atgcagttga aaaatcggct gtcgcggttg tgttataccc taatgctgta gaaactttac
    15901 cgctatttcc ttctaagcct gttattgtgc ttactagtgt tgagttaact ttagatccat
    15961 caccaattgc gatagatgtt tgtgggttat tatctggtat ggtcccatag gttggtgaat
    16021 aggttgcagc acttgcaaaa cctgcagaaa gcgcaagact tagtgtgctg agtttaataa
    16081 tattagtggt tagtgatgta tttgttgcat tagatttatt agcacttctt gataattcag
    16141 aagcaacaat ccaagttcgt tttgcatggt tccaaacaat gcgataaatt ttattcatag
    16201 aactactcct gttcttattt tttaa
//
LOCUS       DANMBQ010000048        15869 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.048, whole genome shotgun sequence.
ACCESSION   DANMBQ010000048 DANMBQ010000000
VERSION     DANMBQ010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15869
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.048"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..1295)
                     /locus_tag="PXE92_001280"
     CDS             complement(<1..1295)
                     /locus_tag="PXE92_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL5760534.1"
                     /translation="MQEAYDIQHLCTRKEDKSFDRKSARKEPKEILRHLIGFANADGG
                     LLVIGIEDNGEITGFNYQKAHQPEEFIHALHNLQKMPIPVTYQQIEVVNSRGLADFVL
                     LFEVTASSGRVITSHDDRVFLRSKDQTLELNFEQRLQLEYEKGQRAFEEQPIARADFT
                     DLDMDLLEQYRQKLHTDRSIEEILKARDLINKEGQITNACILLFGNNPTRYFPNARLR
                     FLRYEGKAPLTGRTFNVVKEFMLEEPIPKLLESAKAVLKSQLREFQRLDENGQFTKID
                     EYPEFAWLEGIVNAIAHRSYSNQGDCIRISMFDDRLEIFSPGGLPRPVTLENMYYTRF
                     SRNPKIARVLYEFGWVKELNEGVNRMAEEMNAYQLNTPSYFEPNENAVRLILENNIEH
                     RTLRALERIEEIFTQDIMATLNKNEVTILQYLYENEMITV"
     gene            complement(1395..1799)
                     /locus_tag="PXE92_001281"
     CDS             complement(1395..1799)
                     /locus_tag="PXE92_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydratase"
                     /protein_id="HDL5760535.1"
                     /translation="MHKFTFPIEQIAPLVPHSGNMILLDRITAFGEDFLTAETNIRPD
                     NPLIKHGKLATYASIEIMAQAGEPVRLGYLLGTRKLHLHRQEIPIGSQLQIQIKMSIQ
                     DATGFGVFDCQLIDLADNQVLLEGALNVFSPK"
     gene            complement(1792..3014)
                     /locus_tag="PXE92_001282"
                     /pseudo
     CDS             complement(1792..3014)
                     /locus_tag="PXE92_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005544283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
     gene            complement(3101..3520)
                     /locus_tag="PXE92_001283"
     CDS             complement(3101..3520)
                     /locus_tag="PXE92_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760536.1"
                     /translation="MLRLLSFCFIFLLSACTVLPQIKQLPPQVESVKSFKVENNGQQS
                     LLLIQFYENKWRWIQTDPLGAPIARVWLTKKGWEPDGFVMPNKQAQLLFTALVNALNP
                     HSPPFYLDKGWKIEREKSQFTIWLPDSSKWKVEILGE"
     gene            complement(3582..4271)
                     /gene="rplA"
                     /locus_tag="PXE92_001284"
     CDS             complement(3582..4271)
                     /gene="rplA"
                     /locus_tag="PXE92_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDL5760537.1"
                     /translation="MAKLTKKMKAIKAGVDSTKAYDINEAVEVLKKFATAKFVESVDV
                     AVNLGIDSRKSDQNVRGATVLPHGTGRTARVAVFTQGANAEAAKAAGADLVGMEDLAE
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQ
                     IRYRNDKNGIIHTTIGKADFSAEQLKDNLNALLAALTKAKPTTAKGIFIKKVSISTTM
                     GAGVAVDQASL"
     gene            complement(4276..4704)
                     /gene="rplK"
                     /locus_tag="PXE92_001285"
     CDS             complement(4276..4704)
                     /gene="rplK"
                     /locus_tag="PXE92_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDL5760538.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     RTESLEKGLPIPVVITVYADKSFTFVTKTPPAAVLLKKAVGIKSGSGKPNKDKVGTVT
                     QEQIRQIAETKAADMTGATIETKMKSIAGTARSMGLIVEE"
     gene            complement(4937..5500)
                     /gene="nusG"
                     /locus_tag="PXE92_001286"
     CDS             complement(4937..5500)
                     /gene="nusG"
                     /locus_tag="PXE92_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDL5760539.1"
                     /translation="MSEVEVKENGSKRWYVLQAFSGFENRVAVTLREYIKLHKMEEQF
                     GEVLVPTEEVVENVGGKRRKTERKFFPGYVLVEMEMNDDTWHLVKSVPRVMGFIGGTA
                     DRPAPITKREADRILNRVQETAEKPRHRKEFQPGESILVTEGPFADFSGTVEEVDYEK
                     GRLKVSVSIFGRATPVELEFSQVEKQS"
     gene            complement(5502..5915)
                     /gene="secE"
                     /locus_tag="PXE92_001287"
     CDS             complement(5502..5915)
                     /gene="secE"
                     /locus_tag="PXE92_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDL5760540.1"
                     /translation="MATEIKTKTPEQVEQKGGKSKGANTALWLVAIVFLAVAAVGNAY
                     FSSHFSLIVRVLLLVVLLVGAVALAAITNQGQKAIHFIKESRTELRKIIWPTRPEATQ
                     TTLIVLAMCVVVSLVLWGIDSIIVALITFVTSLRF"
     gene            complement(6028..7050)
                     /locus_tag="PXE92_001288"
     CDS             complement(6028..7050)
                     /locus_tag="PXE92_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5760541.1"
                     /translation="MANGTSRNRRSSGRVTLADVAKVVGVGQMTVSRALRTPEMVSEP
                     LRKRIEEAIIELGYIPHFSARQLASAESHNLVIVTTSISSTENTLILSALRKSVADSA
                     LQMVILIADQESWFQELINHAPQAIVFLNLDCPPNVREWIKNSNIPTVEIGAIKKEPI
                     HLSVGIDSHEAMEKMIHFLVKKGYREIGLLSAKQDLSIFKQYLESWHTTLFAHHISPL
                     KIHHVVEDISFSAGATLLTEALLNWEAIDALVFLSDELACGALYEALRRHMSIPKDLA
                     IAGLGGLEVGSISYPKLTTIAIPYEQMGKIAGKQLLTLLSGKTLSAEEMIVKLPNKLV
                     IRDSAA"
     gene            7281..7550
                     /locus_tag="PXE92_001289"
     CDS             7281..7550
                     /locus_tag="PXE92_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5760542.1"
                     /translation="MKIMAVCGSGLGSSFMMEMNIKKVLAKLGVEAEVSHTDLSSVVA
                     DDADLFVMAKDIAASSNVPKEKLIVVKNIVGLAEFEEKLTAYFNQ"
     gene            7563..8913
                     /locus_tag="PXE92_001290"
                     /pseudo
     CDS             7563..8913
                     /locus_tag="PXE92_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013745980.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
     gene            complement(9008..10156)
                     /gene="dprA"
                     /locus_tag="PXE92_001291"
     CDS             complement(9008..10156)
                     /gene="dprA"
                     /locus_tag="PXE92_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDL5760543.1"
                     /translation="MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQI
                     GWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLFDENYPFLLKQISTAPPLIYVKG
                     NVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQKIVM
                     EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIIS
                     GLSLGTLVIEATLNSGSLITARYALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVE
                     GVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAKNLPSLTACQQQIYQH
                     ISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY"
     gene            10245..10757
                     /gene="def"
                     /locus_tag="PXE92_001292"
     CDS             10245..10757
                     /gene="def"
                     /locus_tag="PXE92_001292"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDL5760544.1"
                     /translation="MAILDVVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEG
                     IGLAAPQVGVLKRVITIDIEGDKTNQVVLINPEILESSGETGIEEGCLSIPGHRALVP
                     RKEKVKVKALNRQGEEIIIDADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQ
                     KLKKQIARAK"
     gene            10851..11777
                     /gene="rfaD"
                     /locus_tag="PXE92_001293"
     CDS             10851..11777
                     /gene="rfaD"
                     /locus_tag="PXE92_001293"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HDL5760545.1"
                     /translation="MIIVTGGAGMIGSNIVKALNEIGRKDILVVDNLKNGEKFINLVD
                     LDIADYCDKEDFIASIIAGDDFGEIDAVFHQGACSATTEWDGKYLMQNNYEYSKELLH
                     FCLDRQIPFFYASSAATYGGRSDNFIEKREFEGPLNAYGYSKFLFDEYVRRILPEAES
                     PVCGFKYFNVYGPREQHKGSMASVAFHLNNQMLKGENPKLFAGSEQFLRDFVYVEDVA
                     KVNLWAWQNSISGIFNLGTGKAESFQEVANAVIKYHGKGEIETIPFPDHLKSRYQTFT
                     QADLTNLRAAGYTGTFKTVAEGTAEYMAWLNR"
     gene            complement(11845..12375)
                     /gene="fabA"
                     /locus_tag="PXE92_001294"
     CDS             complement(11845..12375)
                     /gene="fabA"
                     /locus_tag="PXE92_001294"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017807287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HDL5760546.1"
                     /translation="MNSCTPIIKPSYTYEELLLSGKGELFGEKGPQLPAPPMLMMDRI
                     IEMNQEKGNFEKGYIEAEFDIKPDLWFFNCHFINDPVMPGCLGLDAMWQLVGFYLGWI
                     GGEGKGRALGVGEVKFTGQILPTAKKVTYRIHMKRVVNRKLVMGVADGEVEVDGRVIY
                     TATDLKVGLFQDTTAF"
     gene            complement(12488..14125)
                     /locus_tag="PXE92_001295"
     CDS             complement(12488..14125)
                     /locus_tag="PXE92_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5760547.1"
                     /translation="MTLSLLSSQKLVMQNDFSRLDEKLNFLDFQPQAKQALNQFLQSQ
                     FGALLVLKSELFPEFINEITEYLKKYSVDLPIISKMDFNKNSLFGYSVFLERELKTEY
                     VKGAIHEADKGILIVNIRSLLLDITQWDKLKQALLFGEYEPNSVNHSPYLSAKEKSTF
                     KLILVGEREDISTLSAYDDGLYQFGQYTEIKSYLSLSDNVEQWGGYVQNYAENLINKR
                     LTSTALNQFLQAYIRESESRELVSISPTLLRKHLLGIQNFYPNVTEIDEVKGYFDYLE
                     QQSSILNQYTVGDILTNQLYIETEGEEIGQINGLSVIEFEGIPHSFGEPLRMSCNVQY
                     GDGEITDIERKVELGGNIHSKGIIIAQSCLANLLELPTQLPFSASIAFEQSYGEIDGD
                     SSSLAIFNVLVSALAKVGLPQSIAVTGAIDQFGNVLSVGGVNQKIEGFFNICHARQLT
                     GKQGVIIPAACVSHLSLSSEVVEAVEQGLFKIWTVENVFDAIAILFERDFYDDEKAPN
                     SAQTALFTLIHQNLDERESEETSGSFLSKICKKIKLD"
     gene            14218..14664
                     /gene="matP"
                     /locus_tag="PXE92_001296"
     CDS             14218..14664
                     /gene="matP"
                     /locus_tag="PXE92_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HDL5760548.1"
                     /translation="MRYQKLITQETTWKWQYLLKKHREGENITKYEEQSLIDLKVQFL
                     STLQNSPDEVEKWIKSEMTPEQRKKMRQSVRAKRKRFFNAEKQTTKKKSIDLEYSSWL
                     RLSKYAKSQKLTLSEAIVKLTDELENKQLYLEQVAKMKSSLKDLLK"
     gene            complement(14730..15866)
                     /gene="ompA"
                     /locus_tag="PXE92_001297"
     CDS             complement(14730..15866)
                     /gene="ompA"
                     /locus_tag="PXE92_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_119863613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HDL5760549.1"
                     /translation="MKKTLVALAVLSAAAVAQAAPQANTFYAGAKAGWASFHDGLTQF
                     DNTYDYGSGINLGINLGINRNSVTYGVFGGYQILNQNNFGLATELGYDYFGRVRGNTT
                     FSGDDKEKTAAKHSAHGAHLSLKPSYEVVPNLDVYGKVGVALVRNDYYVQQHVDKDSR
                     IKVHNLKPSLLLGAGLEYAITPELAARVEYQYLNRVGNLDKAVRTTVGYLIPRGTNFQ
                     YSPDIHSVSAGLSYRFGQGAAPVEAPEVVTKNFAFSSDVLFDFGKSSLKPAAATSLDA
                     AHAEISNLGLANLAIQVNGYTDRIGKEASNLKLSQRRAETVANYIVSKGTNPANVTAV
                     GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGSKEVTM"
BASE COUNT         4602 a         3387 c         3043 g         4837 t
ORIGIN      
        1 acagtaatca tttcattttc atataaatat tgcaggatag taacttcatt tttatttaat
       61 gtcgccataa tatcctgcgt aaaaatttct tctattcgtt ctaatgccct taatgtccga
      121 tgttcaatat tattttctaa aatcagtctg accgcatttt cattgggttc aaagtaagaa
      181 ggtgtattaa gttggtaagc gttcatttcc tccgccatac gattaacacc ttcattcagc
      241 tctttgaccc aaccaaattc atacagcact cgtgcaatct tcggattgcg tgaaaaacgg
      301 gtatagtaca tattttcaag cgtcacaggg cgaggtaatc cacccggact aaaaatttcc
      361 aaacggtcat caaacatcga aatgcgaatg cagtcccctt gattactgta actacggtgt
      421 gcaatcgcat tgacaatacc ttctaaccaa gcaaattctg gatactcatc aatttttgtg
      481 aattgcccgt tttcatctaa acgttggaac tctcgtaatt ggctttttaa tactgcctta
      541 gcactctcca ataacttagg aataggctct tcaagcataa attctttgac gacattaaaa
      601 gttctaccgg tcagaggtgc tttaccttca taccgcaaaa aacgcaaacg ggcattagga
      661 aaataacgtg tcgggttatt cccaaatagc aaaatacagg cattcgtaat ttgcccttct
      721 ttgttaatta aatctcgggc tttcagaatc tcttctattg agcgatctgt gtgtaatttc
      781 tgtcgatact gttctaataa atccatatcc agatcagtaa aatcagcgcg tgctatcggt
      841 tgctcttcaa aagcacgctg ccctttttcg tactctaatt gcaaacgttg ttcaaaattg
      901 agttccaaag tttgatcttt tgagcgtaga aaaacccgat catcgtgaga ggtaatcacc
      961 ctcccactcg aagctgtaac ttcaaataat aagacaaaat ccgctaaacc tcgactattt
     1021 accacctcaa tttgctgata ggtcaccggt atcggcattt tttgtaaatt gtgcagagcg
     1081 tggataaatt cttccggctg atgggctttt tggtagttaa aaccggtaat ttcgccatta
     1141 tcttcaatac caataactaa taaaccgccg tctgcattcg caaaaccaat caaatgccgc
     1201 aaaatctctt tcggttcttt tctcgcactt ttgcgatcaa aggatttatc ttctttgcga
     1261 gtacaaagat gttgaatgtc ataggcctct tgcataacga atttcctacc aactactacc
     1321 aactactacc aactactacc aactactact tactactact tactactact tactactact
     1381 tactactacc aactctattt cggactaaac acattcagcg ccccttctaa aagcacttgg
     1441 ttgtcggcta aatcgatcag ttggcagtcg aatacgccga agccggtggc atcttgaata
     1501 gacattttga tctgaatttg tagctgtgag ccaatcggga tttcttggcg gtggaggtgc
     1561 agtttgcgag tgccgagcag gtagcctaag cgaactggtt cgccggcttg tgccataatt
     1621 tcaatgctgg cgtaggtggc aagttttccg tgtttgatca gcggattgtc agggcgaata
     1681 ttggtttcag cggtcaaaaa atcctcgccg aatgcggtaa tgcggtcgag taggatcata
     1741 ttgccactgt gaggaaccaa tggtgcaatt tgttcgatag ggaaggtgaa tttatgcatc
     1801 gctttctccc aaaatcagta cgctgttatt gccgccaaag gcaaaagagc tgcttgcgcc
     1861 aatccgtctg cctgctgccc aacggctctg ttcatcggtg atcgcaatgt tcggcaggtt
     1921 ttcgtccgct tgtttatccc ataattgcgc agggagcttg ccggtcgggt tgtgttggcg
     1981 acagagcatt ccccacaaaa ttgccgcttc caccgcaccg gcagcccaag ggtatgcccg
     2041 gtgtagggtt tggtggtggt gcaagcggtc tgattaccga agatttttgc cacagcgagg
     2101 ctttccattt gatcgttatg aagcgtccct gtgccgtgca ggttgatcca gccgatgtcg
     2161 gctgcgtcta aatcagcatt gtgcagggca ttttggaaag cggaaattgc cccttcccct
     2221 tcggggtgag gtgaggacat atggtaagcg tccgagctgg aaccataacc cagtaactga
     2281 atgcgatgtt cgtccagtgg ttcacggctc atcacaaaca ccgctgcgcc ttcgccgatg
     2341 ttaatgccgt tacggttagc ggaaaatggg ttggtttgtt ggtttgataa cacttccagc
     2401 gagctaaatc cgctgatagt taaaggcgaa agggtatcca caccaccgca aatcaccgca
     2461 tcgcacaagc cggctttcag taaacgggca gcagaaatta acgctcttgc ctctgaggtg
     2521 caggcggtgg aaatgccgta actcagcccc gttaagccat acacttcggc aacgaaatca
     2581 gacggcgcag agaagagaat ttgctgttga ttaaactgct cggtggcata atcgccctgc
     2641 acaccggctt tgaagacggg aatattttca tcggcgccgg tagtggacgt gccgatgatc
     2701 accgcaatcc gctcacgccc gaattgctcg atacaagcgg taattttcgg ctcaatttct
     2761 gcaagggcgt gccatagcag ttggttattg cggctgcggt gttcaataga tagttcaaca
     2821 ggaaaatcac gcaatctagc agagacttgc cctagaaatt tcggtgaact atttgaaata
     2881 ttatgtcgta aataaggctg tgaagtcgta tctaaaggag atactttcgc attaattaaa
     2941 acattcaaat gctccacgat gccatatcca atcggactgg tgatggcggg ctctgataaa
     3001 tatagtgtca ttattattta ttccagtatt attgtgtaat ggcactaaaa ttataaaatt
     3061 catattcaag tgattcaagc atagaggttc aagttttcgc ttattccccc aatatttcca
     3121 ctttccattt actgctatct ggtagccaaa tcgtaaattg ggatttttcc ctctcaattt
     3181 tccaaccttt atctaaataa aaaggtggag aatgagggtt taatgcattg actaaagctg
     3241 taaataatag ctgtgcctgc ttatttggca ttacaaagcc atctggctcc caaccttttt
     3301 tagtaagcca tactctggca ataggagcac ctaaaggatc agtttgaatc caacgccatt
     3361 tattttcata aaattgaatt agaagcaaac tttgctggcc attattttca actttaaagg
     3421 attttacaga ttcaacctgt ggcggtaatt gcttaatttg aggtaataca gtacaagcac
     3481 taagcaaaaa aataaagcaa aaagataata atcttaacat tcgtacctaa agaaaaagac
     3541 cgtagagtat taacactacg gtcttttgat tctattaaaa attaaagtga tgcttgatca
     3601 accgcaacac cagcacccat tgtagtagag atgcttactt tcttgatgaa gatacctttt
     3661 gctgttgttg gttttgcttt tgttaaagca gctaacaatg cgtttaagtt atcttttaat
     3721 tgttcagctg agaagtctgc tttaccgata gtagtgtgga taataccgtt tttgtcgtta
     3781 cggtagcgga tctgaccaga tttcgcattt ttaaccgctt ctgcaacgtt tggtgttact
     3841 gtacctactt tcgggtttgg cattaagccg cgtggaccta atacttgacc taattgacct
     3901 acaacacgca ttgcatctgg agaagcgata acaacatcaa agttcatttc gcctttcttg
     3961 atttgctctg caagatcttc catacccact aagtcagcac ccgctgcttt tgctgcttct
     4021 gcgtttgcac cttgtgtaaa cacagcaaca cgagcggtac ggcctgtacc gtgtggtaat
     4081 acggttgcac cacgcacgtt ttggtctgat ttacgagaat cgatacctaa gtttacagca
     4141 acgtccacgc tctcaacgaa tttagcggtt gcgaattttt ttaacacttc aactgcttcg
     4201 ttgatgtcat aagctttagt agaatctacg ccagctttaa ttgctttcat ttttttagtc
     4261 aatttagcca ttgtattatt cctctacgat taagcccatt gagcgagctg taccagcgat
     4321 tgatttcatt ttggtttcga tagtcgcacc agtcatatct gctgctttag tttcagcgat
     4381 ttgacggatt tgctcttgag ttactgtacc cactttatct ttgttcggtt taccagaacc
     4441 agatttgata cctaccgctt ttttcagtag cactgccgcc ggtggagttt tggtaacgaa
     4501 tgtgaaagat ttatcagcgt aaactgtgat aacaaccgga atcggtaaac ctttctctaa
     4561 gctctcagta cgagcgttga atgctttaca gaattccata atgttaacac cttgttgacc
     4621 taatgcagga ccaaccggtg gtgatgggtt agccataccc gctgcaactt gcagtttaac
     4681 gtaggcttgg actttttttg ccattttaat tttcctctaa atgggtgata acgctgaaaa
     4741 tcagctcccc tgttacataa aaaatacgag tcagcaggct ggctcgtaat aggtcgcaaa
     4801 ttttaaagaa tttgcgacta tttttcaagc aaaactttcg ctttgttgaa taaatcttgt
     4861 tacaagcggt cttttttccg ctgaattttg caaaaaattg agaaaaataa ccgcttgtgt
     4921 gtgaaattaa ttgaaattag ctctgctttt ccacttgact gaattctaat tctaccggtg
     4981 tcgcacgacc aaaaatcgac accgatactt ttaagcgacc tttttcgtaa tccacttctt
     5041 cgaccgtacc ggagaaatct gcaaacggac cttctgtaac caaaatgctt tcgcccggtt
     5101 ggaattcttt tctgtggcgt ggtttttccg ctgtttcttg tacacggttt agaatgcggt
     5161 ctgcttcacg tttggtaatt ggtgcggggc gatctgccgt accaccaata aagcccatta
     5221 cacgaggcac acttttcact aaatgccaag tatcgtcatt catttccatt tcaaccaata
     5281 cataacctgg gaagaattta cgctcggttt tacggcgttt accgcccaca ttttcaacga
     5341 cttcttcggt tggcactaat acttcaccaa actgctcttc cattttgtga agcttaatgt
     5401 attcacgcaa tgttactgcc acacggtttt caaagcctga aaacgcttgt aatacatacc
     5461 agcgttttga gccattttct ttcacttcta cttcactcat tttagaacct taaacttgtt
     5521 acaaatgtaa ttaatgcgac gatgattgag tcaatacccc ataaaaccaa ggaaactact
     5581 acgcacattg ccaatacaat caaggtggtt tgtgttgctt cagggcgtgt cggccagata
     5641 attttgcgta gttcggttcg agactcttta ataaaatgaa ttgccttttg cccctgattt
     5701 gtaattgccg ctagtgcaac agcaccaact agcaacacca ccaataaaag cactcgaaca
     5761 attaatgaaa aatgagatga aaaataggca ttacctaccg cagcaactgc taaaaataca
     5821 atcgcaacca gccataatgc tgtatttgca cctttgcttt tccccccttt ttgttcgact
     5881 tgctcggggg tttttgtttt aatctcagta gccatatata acctaaaaaa tgaataaaaa
     5941 aatcagaaat tattttaaag cgttaaattc tatcattttc tacaagactt gccacgatct
     6001 tttatagatt tttatgcaaa atcaatatta tgcggcgcta tcacgaatca ctagcttatt
     6061 cggtaattta acaatcatct cttctgctga taaggtttta ccactcaaaa gagtaagtag
     6121 ttgtttacct gctatttttc ccatttgctc gtaagggatc gcaatggttg tcaatttagg
     6181 gtaggaaata ctccccactt ctaaaccacc taaaccggca atcgcaagat cttttggaat
     6241 gctcatatgt cggcgtaatg cttcatataa tgctccgcaa gccaattcat cggataaaaa
     6301 aaccaatgca tctattgctt cccaatttag aagggcttca gtcaacaaag ttgctcctgc
     6361 cgaaaacgaa atatcctcta ctacgtggtg gatttttaaa ggagaaatat gatgtgcaaa
     6421 taaagtcgta tgccaacttt ctaaatattg tttgaagatg gataaatctt gcttcgccga
     6481 taacaatcca atctctcgat agcctttttt caccaaaaaa tggatcattt tctccattgc
     6541 ttcgtggcta tcaattccaa cactgagatg aatcggttct ttttttatcg cacctatttc
     6601 tacggtaggg atattgctgt ttttaatcca ctcacggaca ttaggagggc aatctaaatt
     6661 caaaaacact atcgcttgag gagcatgatt aatcagttct tgaaaccaag attcttgatc
     6721 agcgatcaaa atcaccattt gcaatgcgga atccgccacg cttttgcgta atgccgataa
     6781 aattaaggta ttttccgttg agctaatcga cgtcgtcaca atgaccaaat tatgtgattc
     6841 tgcagaagct aattgccgag cagaaaaatg cggaatatat cctagttcaa tgattgcctc
     6901 ttcaatccgt ttacgtagtg gctccgacac catttctggt gtacgcaaag cacgagatac
     6961 cgtcatctgc ccaacaccaa caactttggc tacatcagct aaagtgactc tgcccgaaga
     7021 tcttcgattt ctacttgttc catttgccat actattttcc taattgttcc atattatagg
     7081 gctaaatcct taattttcct atttagaaag aacagagcaa aatgccaact gattattttt
     7141 tatctaatta aatactaaaa atgttaacgc tatcacattt ttaatatttt ctgtttgata
     7201 gcgttaacat ttctattcta tagtatttct atagttcaaa attcagacaa ctattcattc
     7261 acctttaatg gagatttact atgaaaatta tggcagtatg tggttccggc ttaggtagca
     7321 gctttatgat ggaaatgaac attaaaaaag tattggcaaa actcggtgtc gaagcggaag
     7381 tgagtcatac cgacctttcc tctgttgttg ctgatgatgc tgatttattt gtgatggcaa
     7441 aagatattgc cgcaagcagc aatgtgccga aagaaaaact catcgtggta aaaaacattg
     7501 ttggattagc agaattcgaa gaaaaattga ccgcttactt taaccaataa cggagatgtt
     7561 atatggaatc gctactcttt tttatattag atattctcaa agtgccttcc gttctagtgg
     7621 gtttaattgc tctggtcggt ttagttgcac agaaaaaatc ggtatccgat attgttaaag
     7681 gaacaatcaa aactatttta ggcttcttag tgttaagcgg tggtgcaaca gtacttttaa
     7741 gctccctgac tcctttaggc ggtatgtttg aacacgcctt caacgtgcaa ggcattatcc
     7801 ctaataacga agcgattgtg tctatggcaa tcgaaaaata tggtacggcg actgcgttaa
     7861 ttatggcatt cggtatggta gccaatattt taattgcacg ttttacccgc ctaaaattca
     7921 ttttcttaac cggacaccat accttctata tggcgtgtat gatcggcgta atcctaaccg
     7981 ttgccggctt tgaaggtatt cagctcgtct ttgtcggggc attaacctta gggttaatta
     8041 tgtttcccga ctatcgctca cttctatatg aaaaaagtga ccgctagcaa tgatgttgcc
     8101 ttaggtcatt tcggcacatt gggctacgtg cttgctggtt caatcgggca actggtagga
     8161 aaaggctcta aatctaccga agaaatggat ttacctaaaa acctcggctt cttacgtgat
     8221 agctccattt ctatttcact cacgatgatg gcgatttact atattctcgc ccttgcttcg
     8281 ggcagtgaat acgtttctac attaagcggc ggacaacatt atttagtgta tgccaccatt
     8341 caagccatca cttttgcagc cggtgtttat gtcattttgc aaggggttcg tttaatttta
     8401 gccgagatcg tcccggcatt taccggcttc tccgaaaaat tagtacctga tgccaaaccg
     8461 gctctcgact gcccgattgt tttcccttac gcccccaatg cggtattagt tggatttctt
     8521 gccagtttct taggtgggat tttaagctta gccattctag ggcaacttaa ttgggtgtta
     8581 attttaccgg gcgtagtgcc acacttcttc tgtggggcaa ctgccggcgt atttgggaac
     8641 gccaccggcg ggcgtcgtgg tgcaattatc ggtgctttta ttcacggcat attaattacc
     8701 ttcttgcctg tattcttatt acctgtactg ggttcattag gctttgctaa caccactttc
     8761 tctgactcag acttcggcgg tattgggatt gtgttaggct atatggctca atacttcgac
     8821 aagaatatca ttacgctcat tattgtcggc ttattcgctc tgttggtagc ctataattat
     8881 ttggcgaaaa aaccggcaaa actgaatacc taattaaaat caggtgttat ttgctgcctg
     8941 cgaggaatct tccctgccat ttcttgatgg tagggaattt tgtttagtta aacgacaacg
     9001 ctcttgttca atacccatta tccatcacat accccccact cacttgttta atcacaccgg
     9061 ctaattccag acccagtaat tcaaccagca atatttcaat cgtcaactcc gtaactttgg
     9121 ctaaatcatc aattgccatc ggctctaagc tgatatgctg ataaatttgc tgctggcaag
     9181 cggtcagact tggcagattt tttgcgaatt tttcgctgtt tttgaccgct tgtaaagatg
     9241 tgcttactgt tggcttagac tcatcaaaca aagggatttg ctgaggttga tattgcgagg
     9301 cgaccacctc taaaatatct tccacacctt ccacgagcaa tgccccttct ttaattagct
     9361 tgtggcaacc ttgtgcgtaa gggttttgta ccgcattcgg taacgcaaac acttccctac
     9421 cttgttcaag ggcataacga gcggtaatca gtgaaccact attaagcgtt gcttcaataa
     9481 ctaaagtgcc gagcgataag ccactaataa ttcgattacg acgaggaaaa ttttctgcca
     9541 ccggcggctg attaggcgag aactccgaca ccaatgcacc acctaaatca acaatttgtt
     9601 cggctaattt tttatggcga gcaggataga cttgatttaa tccactccct aacacggcaa
     9661 tcgttatgcc ttgttccata acgatttttt gatgggcaaa accgtcaata ccaatggcta
     9721 aaccgctggt aatgataata ttatggcgag ctaattcggc agcaaattgc ccagcccaat
     9781 attcaccata atgagaatag tctcggctgc caacaatcgc aatttgtggc agagaaaggc
     9841 tttccacatt tccctttaca taaattaacg gtggcgcagt cgaaatttgt tttaagagaa
     9901 acggataatt ttcatcaaag agtgtcacaa tttgctgatt tggcaattct gaccaagtca
     9961 tcgcctgatc aatccacttt tgatcaggat taaaccaacg ttgaatttgc ttttcattcc
    10021 aacctatttg tttgagttga agtttgtcat agtggcaaaa ttcagcaaaa ttgagttccg
    10081 ccaataatcg ccctatacgt tgagccccca tttgcggcac ttgtaataat cgtaataaat
    10141 cgtagtgata tgccatattt tcatcctcaa aatttcccta ataataagaa aaggtttaaa
    10201 atagccaaac gaatttttta aacttttcga gagagatcac aaaaatggca atattagatg
    10261 ttgtgcttta ccccgatgag aaactggcaa ccgtttgtga accggtggaa caggtggacg
    10321 aagcactgaa tcgttttatc gatgatatgt ttgagacaat gtacgaacac gaaggtattg
    10381 gcttagctgc accgcaagtg ggcgtactta agcgtgttat tactattgat attgagggcg
    10441 acaaaaccaa tcaagtggtg ttaattaacc ctgaaatttt agaaagcagc ggtgaaaccg
    10501 gcattgaaga gggctgtctc tccattcccg ggcatcgtgc cttagtgcca cgcaaagaga
    10561 aagtgaaagt caaagccctt aaccgccaag gcgaagaaat tatcatcgat gccgatgatt
    10621 tatttgcgat ttgtattcaa cacgaaatcg accatttaaa cggcgtgctt tttgttgacc
    10681 acatatccaa tttaaaacgc caacgcatca aagaaaaaat gcaaaaattg aaaaagcaaa
    10741 ttgcacgagc gaaataacca ggcacaagcg gttaaaatgg cttaaaaatt tgcaaattaa
    10801 gtgtgatgac acgataataa ccacagttca actttagaaa ggataaaaat atgattatcg
    10861 tcaccggcgg cgcaggtatg attggcagta acattgttaa agccttaaat gaaatcggtc
    10921 gcaaagatat tttagtagta gataacctca aaaacgggga aaaatttatc aacttagtgg
    10981 acttagatat tgcggattat tgcgataaag aggatttcat cgcctctatt atcgccggcg
    11041 atgattttgg tgagattgat gcggttttcc atcaaggggc ttgctcggca accaccgaat
    11101 gggacggcaa atacttaatg caaaataact acgaatattc aaaagagtta ttgcattttt
    11161 gcttagatcg ccaaattcct ttcttctatg cctcaagtgc ggcaacctat ggcggacgtt
    11221 cggataattt tatcgagaaa cgggagtttg aaggtccatt aaatgcttat ggctactcca
    11281 aattcctgtt tgatgaatat gtccgccgta ttttgcctga ggcagaatca ccggtctgtg
    11341 gtttcaaata tttcaacgta tacgggcctc gtgagcaaca caaaggttca atggcaagcg
    11401 tggcattcca cttaaacaac cagatgttaa aaggggaaaa tccaaaacta tttgccggct
    11461 cagagcagtt cttgcgtgat tttgtttatg tggaagatgt ggcaaaagtg aatctttggg
    11521 cgtggcaaaa cagcatttct ggcattttca acctcggcac cggaaaagcg gaatctttcc
    11581 aagaagttgc gaatgcggtt atcaaatacc acggcaaagg cgaaattgaa accatcccat
    11641 tcccggatca tttaaaatcc cgctaccaaa cgttcactca agcggactta accaacctaa
    11701 gagccgctgg ctacacaggc acatttaaaa ccgttgctga aggaacagcg gaatatatgg
    11761 cgtggttgaa tcgctaatca aacgttgtta aaaaagcaga aagagctacg aaatgtagct
    11821 ctttttgtta taaggttata aggattagaa tgctgtcgta tcttggaata agcctacttt
    11881 taaatcagta gcagtataga tcactcgccc gtccacttcg acttcaccat cagcaacccc
    11941 catcactaac ttacgattga ccacacgttt catatggata cggtaagtaa cttttttcgc
    12001 tgtcggtaaa atttgtccgg tgaattttac ttcacctacg cccaatgcac gccctttgcc
    12061 ttcgccacca atccagccga gataaaaacc aaccagttgc cacatcgcat ctaagcctaa
    12121 gcaacccggc attacaggat cgttaataaa atggcagtta aaaaaccata aatccggttt
    12181 aatatcaaac tcagcttcaa tatacccttt ttcaaaattg cctttttctt ggttcatttc
    12241 aatgatgcga tccatcatta acatcggtgg agccggcaat tgaggccctt tttcaccgaa
    12301 taattctcct tttcctgata gcaaaagctc ttcgtaagta tagcttggtt tgataattgg
    12361 tgtacaactg ttcattattt ttaaaatcct gtaaagtgaa aaaagcctgt tatatcaata
    12421 actgataaat caggctgata gtaacagact tttaattcag tgaacagttg taagctgact
    12481 tgtcggatca gtctagcttt atctttttgc aaattttgct taaaaatgaa ccgcttgttt
    12541 cttcactttc ccgctcatct agattctggt gaatcaaggt aaataatgct gtttgggctg
    12601 agttaggggc tttctcatca tcataaaaat cccgctcaaa cagaatcgct atggcatcaa
    12661 acacattttc caccgtccaa attttaaata gaccttgctc cactgcctca acaacttctg
    12721 aacttaaact caaatggcta acacaggccg ccggaataat cacaccttgt ttccccgtta
    12781 attggcgagc gtgacaaata ttaaagaagc cttcaatttt ctgatttacc ccgcccacgc
    12841 ttagcacatt cccaaattga tcgatagcac ctgtcaccgc aatagattgt ggcaagccaa
    12901 ctttagctaa ggcactcact agtacattga aaatcgcaag agaagaacta tccccatcaa
    12961 tttcaccata ggattgttca aaagcaatcg aagctgaaaa cggtaactgg gttggtagtt
    13021 ctaacagatt cgctaaacaa gattgagcga taataatacc tttggagtgg atatttcccc
    13081 ctagctccac tttacgctca atatctgtaa tttcgccatc accatattgt acattacaac
    13141 tcatgcgtaa gggctcgcca aaactatgcg gaatgccttc aaactcaatg accgataagc
    13201 cattgatctg cccaatttcc tctccttcgg tttcaatata aagttgatta gtcagaatat
    13261 cacccaccgt atattgattt aatatcgatg attgctgttc taaataatca aaataacctt
    13321 ttacctcgtc aatttcggtc acatttgggt aaaaattttg aattcctaat aaatgttttc
    13381 tcaataatgt aggggaaata gacaccaact ctcggctttc actttcacgt atataggcct
    13441 gtaaaaattg attaagcgct gtggaagtta atcgcttatt gatgagattc tcagcataat
    13501 tctgaacata acctccccac tgctccacat tatccgataa tgataagtag gattttattt
    13561 cggtatattg cccaaattgg tacaacccat catcataagc agataaagta gaaatatctt
    13621 ctctttcccc tactaaaatc aatttaaatg ttgatttctc tttagccgat aaatagggtg
    13681 agtgattaac agaatttggc tcatattcac caaataataa tgcctgtttt agcttatccc
    13741 attgggtaat atccaataag agcgaacgga tattaacaat taaaattccc ttatctgcct
    13801 cgtgaattgc acctttaaca tattctgttt tcagctctct ttccaaaaac acagaataac
    13861 caaatagact atttttattg aaatccattt tgctaataat cggcagatct acactatatt
    13921 ttttcagata ttccgtgatt tcattgataa attccggaaa aagctcagat tttaagacta
    13981 ataaagcacc aaactgagat tgtaaaaatt gatttaacgc ttgttttgct tgaggttgaa
    14041 aatctaaaaa attcaatttc tcatctaaac gagagaaatc attttgcatt actaattttt
    14101 ggctactaag taaagaaagg gtcacaaatc tgcctcatta ttgaaaattt ggtttattat
    14161 acaaaattcc gctatacttg ctaaatatag cttacttttt cctatcatat tcagattatg
    14221 cgatatcaga aactcatcac ccaagaaaca acttggaaat ggcaatatct cctaaaaaaa
    14281 catcgtgaag gagaaaatat tactaagtac gaagaacaaa gcttgatcga tttaaaagtt
    14341 cagttcctct ctactttgca aaactctccg gacgaagtgg aaaaatggat taagtcggaa
    14401 atgacgcctg agcaacgtaa gaaaatgcgt caatcagtac gcgccaaacg caaacgcttc
    14461 tttaatgctg aaaagcaaac aaccaagaaa aaatccattg atttagagta ttcgagctgg
    14521 ttaaggctct ctaaatatgc caaaagccaa aaactaacgc tttctgaagc tattgtcaaa
    14581 ttaaccgatg aactcgaaaa taaacaactt tacttagagc aagttgctaa aatgaaatca
    14641 agtttaaaag atttactgaa ataaaaaaag aaaaaagccc actaacaagc gggctttttt
    14701 tgattcaatt tttcaactga ataactatat tacatagtta cttcttttga accttgaact
    14761 tggatttcaa cacgacgatc tggtgctaag caagcgatta atgctttacg acctttaact
    14821 gcatcacatg tgtgaccagt tactgggttt gcttcaccgt aacctacagc tgttacatta
    14881 gctgggttag tacctttaga aacgatgtaa ttagctactg tttcagcacg acgttgtgaa
    14941 agttttaagt tagatgcttc tttaccgatg cggtctgtgt aaccattaac ttggatagct
    15001 aggtttgcta agcctaagtt gctgatttca gcgtgtgctg catctaaaga agttgctgct
    15061 gctggtttta agcttgattt accgaaatca aataaaacat cagagctgaa tgcgaagttt
    15121 ttagttacaa cttctggtgc ttcaactggt gctgcacctt gaccgaaacg gtatgataaa
    15181 cctgcagata ctgagtggat atctgggctg tattggaaat ttgtacctct tggtattaga
    15241 taaccaactg ttgtacgaac tgccttatct aagttaccaa cacgatttaa gtattgatat
    15301 tcaacacgag cagctaattc aggagtaatt gcatactcaa gaccagcacc taataataga
    15361 gatggtttta agttgtgaac tttaatgcgt gaatctttat ctacatgttg ttgtacgtag
    15421 taatcgttgc gaactaatgc aacacctact ttaccgtaaa catctaagtt aggaacaact
    15481 tcgtagcttg gttttaagct taagtgcgca ccgtgagctg aatgtttagc cgcagttttt
    15541 tctttatcat caccagaaaa tgtagtgtta ccacgaacac gaccaaagta gtcataacct
    15601 aattctgtcg ctaaaccaaa gttgttttgg tttaagattt ggtaaccacc gaatacaccg
    15661 taagttacag agttacggtt aataccgagg ttaataccga ggttaatacc ggatccataa
    15721 tcatatgtgt tgtcaaattg agttaaaccg tcgtggaatg atgcccaacc agctttagca
    15781 cctgcgtaga aagtgttagc ttgtggagct gcttgagcta ctgcagctgc tgataatact
    15841 gctaatgcaa ctaatgtttt tttcatttt
//
LOCUS       DANMBQ010000049        15808 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.049, whole genome shotgun sequence.
ACCESSION   DANMBQ010000049 DANMBQ010000000
VERSION     DANMBQ010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15808)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15808)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15808
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.049"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            63..2891
                     /gene="uvrA"
                     /locus_tag="PXE92_001298"
     CDS             63..2891
                     /gene="uvrA"
                     /locus_tag="PXE92_001298"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDL5760550.1"
                     /translation="MQHIDIRGARTHNLKNINLTLPRDKFIVITGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTVT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTISQMVDRVLEEPEGKRLMLLAPVVKERKG
                     EHVKLLENLTASGYLRARIDGEICDLSDPPALELQKKHTIEVVVDRFKVRADLATRLA
                     ESFETALDLSGSTAIIADMDDPNAEEIVFSSSFACPHCGYSLHELEPRLFSFNNPAGA
                     CPTCDGLGVEQFFDAKKVVQNEEVSLAAGAIKGWDRRSFYYFGLLKAVAEHYGFDLET
                     PFGQLPKKYQNIILNGTKEEIEFVYVNDRGDKVKRKHAFEGVLNNMARRYKETESNSV
                     REELAKYINNRPCMDCEGSRLRREARYVFLDKTNLPMVSEKSIGEALTFFEELKLAGQ
                     KEKIAEKILKEIRERLQFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVM
                     YVLDEPSIGLHQRDNERLLNTLVHLRNLGNTVIVVEHDEDAIRAADHIVDIGPGAGVH
                     GGQVIAQGTAAEIMQIEESITGQFLSGKQKIEIPAQRVPYEPTKLLTLSGASGNNLKK
                     VKLEIPVGLFTCITGVSGSGKSTLVNDTLFPLAQNALNRAENSDVAPYESIDGLSHFD
                     KVIDIDQSPIGRTPRSNPATYTGLFTPIREIFAGTQEARARGYNVGRFSFNVRGGRCE
                     ACQGDGVIKVEMHFLPDVYVPCDHCKGKRYNRETLEIRYKGKTIHQVLEMTVEEAREF
                     FAPMPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILD
                     EPTTGLHFADIKQLLGVLHRLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEI
                     IATGTPEEVAKDKRSHTARFLKEILAKG"
     gene            complement(2983..4716)
                     /gene="dauA"
                     /locus_tag="PXE92_001299"
     CDS             complement(2983..4716)
                     /gene="dauA"
                     /locus_tag="PXE92_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HDL5760551.1"
                     /translation="MLNKWFLTKNAFLAVKPFSALKDALNAGYGKQHLIRDIISGLTV
                     GVIAIPLSMALAIASGVPPQHGLYTAIVAGIVIALTGGSRFNISGPTAAFVVILYPVT
                     QQFGLSGLLMATMLSGGILVLMALLRLGRLIEYIPLPVTLGFTCGIGIVIATLQIKDF
                     LGLSIEKMPEHYLGKLEAIFSALPTINWADTLVGVVTLLVLTRWHKLRLPIPGHLPAV
                     FIGTLLSLLLIHFGQNVATIGSAFHYTLSDGTTGYGIPSVLPEFVLPWNLPNAEGNRI
                     DWNLTTIQALLPAAFSMAMLGAIESLLCAVVCDNMTDTKHHSNNELLAQGLGNIASPF
                     LGGITATAAIARSAANVRSGAVSPISSVVHALLVLFALLFLAKALSYLPLSSMAALLL
                     VVAWNMADIPQIIQLTRRSGKNEIAVLLTCITLTVLFDMVIAITVGVLLASLLFIRTI
                     AEMTKSFEMAHPTDLNDVLVYRISGPLFFAAADNLFADLHNKTVHTDHQIKHIVLQCD
                     AVTVLDAGGIHALTRFVQHMLPHQQLHLCNVQFQPMRMLVRSQKTVNEIPQIQFSSDL
                     ESAFDKIRQAN"
     gene            4958..5890
                     /locus_tag="PXE92_001300"
     CDS             4958..5890
                     /locus_tag="PXE92_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5760552.1"
                     /translation="MDSLIHFLSAFLTNITWIGALELGLIYSLVALGVLISYKILDFP
                     DLTADGSFPLGGAVCVISILNQVDPWLATLYGTLAGAVAGMVTASLHIGFKIEKLLAS
                     ILMMIALYSINLRIMGMPNIAILGETTIYDVMPIESDLQLALVRLVMALLVVIIVKGL
                     FDLFFATEIGLAVRATGTNSRMAKAQGIAINKMTILGMAISNALIALGGALYVQSNGG
                     VDISIGVGTIVIGLAAVIIGEAIFSVKRIIWLTFAVIIGSILYRFFIALALNNETLNG
                     IGFGPQDLNLITALLVVIVLAVPRIKHKLLGKRG"
     gene            5892..6689
                     /locus_tag="PXE92_001301"
     CDS             5892..6689
                     /locus_tag="PXE92_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5760553.1"
                     /translation="MIELNNLFITFNKGTAIENPVLRGLSLKVEQGEFVSVIGSNGAG
                     KSTLLNAISGDCAVDSGEILIQGNKVNQSTTWQRANQVARVFQDPMAGTCESLTIEEN
                     MALAYQRGRKRGLGFAIKRQMRELFKDKLALLGLGLENRLTDQMGRLSGGQRQAVSLL
                     MASLQPSNILLLDEHTAALDPKTTDFVLELTNKIVREQKLTTLMVTHSMRQALDYGDR
                     TVMLHQGQVAFDVSGEQRQKMDVPDLLQLFQQSRHEQLSDDGLLLGN"
     gene            6776..6997
                     /locus_tag="PXE92_001302"
     CDS             6776..6997
                     /locus_tag="PXE92_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760554.1"
                     /translation="MLSIFKTPVEKETLDDWAKISVDVAKVAILAIPVILFGKEPTLI
                     KLTNLALLVLSIYVFLTLGRKLRQLKEVL"
     gene            7180..9105
                     /locus_tag="PXE92_001303"
     CDS             7180..9105
                     /locus_tag="PXE92_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HDL5760555.1"
                     /translation="MTKYDDKIQHAFSENGLLSQNISGFRPRQAQLEMAQVVAKAVKF
                     ATPVVVEAGTGTGKTFAYLVPALLSGKKTILSTGSKNLQDQLFNRDLPTIQKALKYKG
                     KIALLKGRANYLCLERLDQVTAMGVLGDKSVLTDLKKVSKWQNATKTGDLSECITIAE
                     DSPILPQLVSTTESCLGSDCPHFKDCYVVQARRKAMEADVVVVNHHLFCADMAVKKTG
                     FGELIPEAELVIFDEAHQLPDIASQYFGQSLSSRQLFDICKDTNIVYRTELKDLSQLG
                     KAADHLTKVVQDFRLLMGGEGQIRGNLRELFRDKKVVDGLVKVAENIDFLSEVAKKSL
                     GRSETLDKIFERLAEVKVQLKKLMDTSVTGYCYWYEANGRSFGLHITPLMVADKFGEQ
                     LKNQQIGWVFTSATLEVGGKFDHFCQRLGIENAEQLVLQSPFDYQHQSLLCVPRYLPD
                     TNKSNTLTALGQLLKPVIEANKGRCFLLCTSYYMMRGLADFLREHSSLNVLLQGETSK
                     SRLLEKFVKEDHSVLVATQSFWEGIDVRGDDLSLVIIDKLPFTSPDEPLLKARMEDCK
                     IQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDSRLVMRNYGQTFLKSLPP
                     SRRTRDLGNVIQFLKQK"
     gene            9179..9544
                     /locus_tag="PXE92_001304"
     CDS             9179..9544
                     /locus_tag="PXE92_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HDL5760556.1"
                     /translation="MLSTLLRMVASLALLFVMLYLGKLIVYLFPIGIPDSILGMLILF
                     GCLVIGIVKVEWVIPSAKPLTRYITLFFLPICVELIEHLELLRQNLNTFVLATALSTL
                     VSVVAIGVFAQWIFHYKRG"
     gene            9546..10232
                     /locus_tag="PXE92_001305"
     CDS             9546..10232
                     /locus_tag="PXE92_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HDL5760557.1"
                     /translation="MSYLYTVLTVIMFIAGLKISQKLKSSFLNPFLIALALLIGVLLI
                     FNIPYQDYYQGNSPLNNLLGVSVVALAYPFYEQLPHIRKKWRQIVVILLFSTIITMIT
                     GLGFSLLFGASQEILAAILPKSVSMPMAIIITNEINGNVAIAAVGVMIAGLVGSILGF
                     TLLRLAKVRNVMVIGLSMGAASHALGTARCLEHSMKAGSYSSIALVACGVLSSIFAPL
                     IFNVIVTLCY"
     gene            10316..12079
                     /gene="msbA"
                     /locus_tag="PXE92_001306"
     CDS             10316..12079
                     /gene="msbA"
                     /locus_tag="PXE92_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HDL5760558.1"
                     /translation="MQEQITQEKDLSTLKTFKRLWPTISPFKAGLITGAVALVLNALV
                     DSSLIYLLKPLLDEGFGQANNDFLKLMAVLVVVFILVRGITNYIASYCLAWVSGKVVM
                     TLRRHIFQHLMYMPVSYFDNNPTGRLLSRVTYDTEMVASSASHSLVTIVREGAYLLSL
                     FVVMIYTSWQLSIVLFVMAPIIGVLISFVSKYFRQLSRNIQSSMGELTVTTEQMLKGH
                     KVVLSFGGQEIEKARFDRVSNDMRRKGMKVVSADGISDGVVQLIASFALSAVLYVATF
                     PEVMSENLTAGSFTVVFSSMMAMLRPLKSLTNVNSQFQRGMAACQTLFEFLDLKTEKD
                     HGLISVAKAEGNVEFKKVSFSYEGKEEKALDNISFTIPKGKTVALVGRSGSGKSTIAN
                     LLTRFYDVTDGQILLDGINIQDYRLKNLREQCSVVSQQVHLFNDTIANNIAYAAIDKY
                     SREEIIAAAKAAHAMEFIEKLENGLDTVIGENGASLSGGQRQRLAIARALLRNSPVLV
                     LDEATSALDTESERAIQSALEVLQKDRTVLVIAHRLSTIEKADEILVVDHGNIIERGS
                     HTELLAQGGAYKQLHSLQFGA"
     gene            12168..12800
                     /gene="lolB"
                     /locus_tag="PXE92_001307"
     CDS             12168..12800
                     /gene="lolB"
                     /locus_tag="PXE92_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HDL5760559.1"
                     /translation="MKKLTKLLSLSALLVLTACNSVLNASTEVQQPTVQIPHDDPQWQ
                     QHLAKLSQIQGYTATGQFGYISPEERFSSHFNWRYTNPIQFGLELSSNLSTKSLKLER
                     NKRGLTVSDNEGNSRSDRDVDALMQEIIGVSFPIDQFAYWVKGLPEKDGNYIVNEKRQ
                     LSQFSYPLNGTLWKASYVEYHEDRVPNLPKLIVLENGTQTLKIRIEKWAY"
     gene            12788..13642
                     /gene="ispE"
                     /locus_tag="PXE92_001308"
     CDS             12788..13642
                     /gene="ispE"
                     /locus_tag="PXE92_001308"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDL5760560.1"
                     /translation="MGVLMKKVTLPSPAKLNLFLYITNKRADGYHELQTLFQFLDFGD
                     EIEIEITESSEVELINPVEGVATEENLIYRAAKLLQKTTACRQGCRIGIKKNLPMGGG
                     VGGGSSNAATVLVGLNHLWNTELSLEKLAELGLSLGADVPIFVRGMAAFAEGVGEVLT
                     PCDPQEKWYVVLKPEVSISTAAVFTDPNLPRNTPKRPLAELLSLPWENDCEKVVREKY
                     SAVEDLIQELLQYAQFRLTGTGACIFAEFETKAEAEQVFAHKPEAVFGFVAKGQNISP
                     LHQMLFQI"
     gene            13668..14618
                     /locus_tag="PXE92_001309"
     CDS             13668..14618
                     /locus_tag="PXE92_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HDL5760561.1"
                     /translation="MTDIKLFAGNATPELANRIAKHLYTSLGNATVGRFSDGEIQVQI
                     NENVRGGDIFIVQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVIADFLSSVGVDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLIDDILKKS
                     DLVNPIVVSPDIGGVVRARAVAKLLNDTDMAIIDKRRPKANVSQVMHIIGDVADRDCI
                     LVDDMIDTGGTLVKAAEALKERGARRVFAYATHAVFSGTAAQNLANPALDEIVVTDTI
                     PLSNEIKALNKVRVLTLSGMLAEAIRRISNEESISAMFDA"
     gene            14696..15706
                     /gene="pyrD"
                     /locus_tag="PXE92_001310"
     CDS             14696..15706
                     /gene="pyrD"
                     /locus_tag="PXE92_001310"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDL5760562.1"
                     /translation="MYSLIRKLLFALDTEKAHQFSIQALALAGKSPFSILPTPDNPTQ
                     VMGLTFKNPIGLAAGADKNGEAIDGFGKLGFGFIEVGTITPLAQDGNPKPRQFRIVDA
                     EGIINRNGFNNKGVDVLVENVKNATYSGILGINIGKNAVTPIEHSFDDYQICLRKVYQ
                     YADYVAVNISSPNTKNLRSLQYGEALDDLLRNLKNEQAQLSQKMGKYRPLVLKIAPDL
                     TDEEIVSVADSLIRYQIDGVIAGNTTLSRESIAGLPYSEQLGGLSGKPLHSLSTRLIS
                     KLSAELGERIPIIGCGGVHSLESGQEKVNAGASLLQVYSAMIYQGPSLIQTLAKHLQL
                     NS"
BASE COUNT         4574 a         2968 c         3679 g         4587 t
ORIGIN      
        1 agttttatta aaatatgcga taatgatcga aaattgagaa aatagcactg gacattaaaa
       61 atatgcaaca tatcgatatt cgtggagcaa gaacacacaa cttaaaaaac atcaatttaa
      121 ccttgccgag agataaattc attgtaatta ccgggctttc cggctcgggc aaatcgtctc
      181 tggcgtttga tacgctctat gcggaaggac aacgccgtta tgtagaatca ctgtctgcat
      241 acgcccgcca gtttctctcc ttaatggaaa agcctgatgt ggatcatatt gaagggcttt
      301 cccctgcgat ttcgattgag caaaaatcaa cctctcacaa cccacgttcg accgtaggaa
      361 cggtaacgga aattcacgac tatttacgtt tattgtttgc tcgagtgggc gagcctcgtt
      421 gccctgacca cgatgtgcca ttggctgctc aaactatttc gcagatggtg gatcgagtat
      481 tggaagaacc ggaaggaaaa cggttgatgc tacttgcccc tgtggtgaaa gagcgtaaag
      541 gcgaacacgt aaaattattg gaaaatttga ccgctagtgg ctatttgcgg gctagaattg
      601 acggtgaaat ttgcgattta tccgacccac cggcattaga attacagaaa aaacacacca
      661 ttgaagtggt ggtggatcgc tttaaagtaa gggctgatct agccacccgt ttggcggaat
      721 cttttgaaac agcgttagat ttatccggct ctaccgcaat tattgcagat atggacgacc
      781 caaatgccga agaaattgtg ttttcgtcca gctttgcttg tccgcattgt ggttactctt
      841 tacacgaatt agaaccacgc cttttctcgt ttaacaaccc ggcaggtgct tgcccgactt
      901 gtgatggttt gggcgttgag cagttttttg atgccaaaaa agtagtgcaa aatgaagagg
      961 tttcattagc cgccggtgcg atcaaaggct gggatcgccg cagtttctac tattttggct
     1021 tattaaaagc cgttgccgag cattatggct ttgatttaga aaccccattc gggcagctac
     1081 cgaaaaaata tcaaaacatt attttaaacg gcactaaaga agagattgag tttgtttatg
     1141 tcaatgaccg aggcgataag gtcaaacgta aacacgcttt tgaaggggtg ctgaataata
     1201 tggctcgccg ctataaagaa accgaatcaa actcggtgcg tgaagagttg gcgaagtata
     1261 ttaataatcg tccttgtatg gattgcgaag gctcacggtt acgccgtgaa gcccgttatg
     1321 tattcttaga taaaaccaat ttgccgatgg tttcggaaaa aagtatcggc gaggcattaa
     1381 ccttttttga agagctgaaa ttagccggtc agaaagaaaa aattgctgag aaaatcctca
     1441 aagaaattcg tgaacggcta cagtttttag tgaatgtcgg cttgaattat ctttctcttt
     1501 cccgctcggc agaaaccctt tcaggtggcg aggctcagcg gattcgcctt gccagccaaa
     1561 ttggtgcggg tttagtaggg gtaatgtatg tgctggatga gccttccatc ggcttgcacc
     1621 aacgagacaa tgaacgccta ctgaatactt tggtgcattt acgcaattta ggcaataccg
     1681 tgattgtggt tgaacacgat gaagatgcga tccgagccgc agatcatatc gtggatatag
     1741 gcccgggtgc cggtgtacac ggtgggcaag ttatcgcaca aggtacggca gctgaaatta
     1801 tgcaaattga ggaatctatt accggacaat tcctctcagg caagcaaaaa attgagattc
     1861 cggctcagcg tgtgccttat gagccaacta aattgctcac cttatcggga gcaagtggta
     1921 acaacttgaa aaaagtgaaa ttagagattc cggttggttt atttacttgt atcacgggtg
     1981 tatcaggttc gggcaaatca actttagtta atgacacact attccctctg gcacagaatg
     2041 cgttaaaccg agcggaaaac agcgatgttg ctccttatga atcgattgac ggcttatcgc
     2101 attttgacaa ggtaattgat attgaccaaa gcccgattgg gagaactcct cgctcaaatc
     2161 cggcaactta caccggatta tttacgccaa ttcgtgagat ttttgccggc acgcaagaag
     2221 ctcgagccag agggtataac gtagggcggt ttagctttaa tgtgcggggc ggacgttgcg
     2281 aagcctgtca aggtgacggc gtgattaaag ttgaaatgca cttcttgcct gatgtgtatg
     2341 tgccttgcga tcactgtaaa ggcaaacgct ataaccgtga aaccttggaa attcgctata
     2401 aaggcaaaac tattcaccaa gtgttagaga tgacggtgga agaggcgaga gaattttttg
     2461 cccctatgcc gatgattgcc cgcaagttgc aaaccttgat ggacgtgggg ttatcttata
     2521 tccgtttagg gcaatcttct actacgctct caggcggtga agcccaacgg gtgaaattgg
     2581 cgaccgagct ttccaaacga gacaccggca aaacgctcta tattttagat gaaccgacca
     2641 ccggcttgca ttttgccgat attaaacagt tactcggcgt gctacatcgc ctgcgtgatc
     2701 aaggcaatac gattgtggtg atcgaacata atttagatgt gattaaaacc gcagactgga
     2761 ttgtcgatct tggccctgaa ggtggcagtg gcggcggtga aattattgct accggcacac
     2821 cggaagaagt ggcaaaagac aaacgttctc acaccgcacg cttcttaaaa gagattttgg
     2881 ctaaaggcta acgttcaaca caagcggtca tattttcgga aaatgttgca atttgcaaaa
     2941 agttggaaaa tatgaccgct tgttttatat ccggagttat tcctagttag cctgtctgat
     3001 tttgtcgaag gcagattcaa gatcgctact gaattgaatt tgcgggattt cgtttaccgt
     3061 tttttgtgag cggactagca ttctcatcgg ctgaaattgc acattacaga gatgaagttg
     3121 ttgatgtggc aacatatgct gtacaaagcg ggttagggcg tgaatgccac cagcatctaa
     3181 tactgtaacg gcatcgcatt gcagcacaat atgtttaatt tggtgatcgg tatgtacggt
     3241 tttattgtgc agatcggcaa agagattatc ggcggcagca aaaaataacg gaccgctgat
     3301 ccgataaacc aacacatcgt tcaaatcggt tgggtgagcc atttcaaagg atttagtcat
     3361 ttctgcaata gtacggataa atagcaggct tgccagtaac acccctaccg taatggcaat
     3421 taccatatca aataataccg tgagggtaat gcaagtcagt aaaaccgcaa tttcattttt
     3481 acctgaacgg cgggtaagtt gaatgatttg tggaatatct gccatattcc aagctactac
     3541 caataatagt gcagccattg aggaaagagg caaataggaa agtgctttag ccaaaaagag
     3601 tagggcaaat aaaaccaaca aggcgtgaac cacactagaa atgggggaaa ctgccccgga
     3661 acgaacattg gcagccgatc tcgcaatcgc tgctgtggcg gtaattcccc ctaaaaatgg
     3721 cgaggcaata ttacctaagc cttgggctaa tagttcgttg ttagagtggt gcttggtatc
     3781 tgtcatatta tcgcacacta ccgcacataa taacgattcg atagccccaa gcattgccat
     3841 tgaaaaggca gccggtaata aggcttgaat ggtggttaag ttccaatcta tccgattccc
     3901 ctctgcattc gggagattcc aaggtaacac aaattcaggt aatacgcttg ggataccata
     3961 cccagtggtg ccgtcagaga gcgtgtagtg gaatgctgag ccgatagtgg caacgttttg
     4021 tccgaaatga atcagcagta atgataacag cgtgccgata aagacggcgg gtaaatgccc
     4081 gggaataggc aaccgtagct tgtgccaacg agttaaaacc aacaatgtta cgacacccac
     4141 taaggtgtca gcccaattta tggttggcaa tgctgaaaaa atagcctcta gcttgccaag
     4201 atagtgttca ggcatttttt caatgcttaa gcccagaaaa tctttgattt gcaaggtggc
     4261 gatcacaata ccgatgccac aggtaaaacc cagtgtgaca ggtagaggaa tgtattcaat
     4321 taagcgtcct aatcggagta acgccatcaa tactaaaatt cctccggaaa gcattgttgc
     4381 catgagtaat ccacttaagc caaactgctg cgtgacgggg tatagaatca ccacaaaagc
     4441 ggctgttggg cctgaaatat taaatcttga accgcctgtt agggcaatca caatcccggc
     4501 aacaatcgcc gtatataaac cgtgctgtgg tggcacaccg ctggcaatcg ccaacgccat
     4561 agataacgga atagcaataa cgccaacggt taagcctgaa ataatatctc tgattaaatg
     4621 ttgtttacca taacctgcat tgagagcatc ttttaatgca ctaaaaggct tgacggcaag
     4681 aaaagcattt ttagttaaaa accatttatt taacatagaa tgttcgagtg aagagaatgt
     4741 ttcgcttatt ttactgcaat gaataaaatt aaatttgagc taacgcaaga aaaagcagga
     4801 aagacgaaat atgttggaga caagcggttg ttttaggcga aaaatttgca aatacaaata
     4861 attagctgat tttattttga aaatagcgta aaatgccact ttaatttgta ctactatagt
     4921 agtgcatttg tgtgatttca ttaactataa taaacaaatg gacagtctta ttcatttttt
     4981 gagtgccttt ttaactaata tcacttggat tggggcgtta gagctggggt taatttattc
     5041 ccttgttgcc cttggggtat taatttctta taaaattctg gattttccgg atctgaccgc
     5101 agacggcagt ttccctttag gaggggcggt gtgtgtgatc agcattttga atcaagttga
     5161 tccttggctg gcaactttat acggcacgct tgccggagca gtagccggta tggttactgc
     5221 aagtttgcat atcggcttta aaatcgaaaa attgcttgcc agtattttaa tgatgatcgc
     5281 actctattcg attaatctac gcattatggg aatgccgaat attgctattt taggcgaaac
     5341 cacgatttac gatgtaatgc cgattgaaag cgatctacag ttagccttag tacgattagt
     5401 gatggcattg ctggttgtta ttatcgtaaa aggtttgttt gacctctttt ttgcgaccga
     5461 aatcggtttg gctgtgcggg caaccggtac taatagtcga atggcgaaag cacagggtat
     5521 tgcgattaat aaaatgacga ttttagggat ggcgatttct aatgcgttaa ttgccttagg
     5581 tggtgctttg tatgtgcaaa gcaacggtgg tgtagatatt tcgattgggg taggaactat
     5641 cgtgattggc ttggcggcgg taattatcgg ggaagcaatt ttttcggtaa aacggattat
     5701 ttggcttacc tttgcggtga ttattggctc aattctttat cgtttcttca tcgcactagc
     5761 attaaataac gaaactttaa acggcattgg ctttggcccg caagatctga atttaattac
     5821 ggcgttattg gtggtgattg tattagcggt tcctcgaatt aaacacaaat tgctcggtaa
     5881 gcgaggttaa tatgattgaa ctcaataact tatttattac cttcaacaaa gggacagcaa
     5941 ttgagaaccc tgtgctgaga ggcttatccc taaaagttga gcaaggcgaa tttgtgtcgg
     6001 taattggtag caatggggcg ggtaaatcta ccttattaaa tgcgatcagt ggtgattgtg
     6061 cggtggactc cggtgagatt ttaattcaag gaaataaggt aaaccaatcc accacttggc
     6121 aacgggcaaa tcaagtcgcc cgagttttcc aagacccgat ggctggcact tgtgaaagtt
     6181 taacgattga agaaaatatg gcactggctt accaacgtgg acgtaaacgt gggttgggct
     6241 ttgcgatcaa acgccaaatg cgagagttat tcaaagacaa acttgctttg ttagggctag
     6301 gtttggaaaa tcggcttact gatcaaatgg ggcgtttatc aggcgggcaa cgccaagcgg
     6361 tgagcttgct gatggcatca cttcagccgt ctaatatctt attgttagat gaacacaccg
     6421 cggcactgga tccgaaaacc accgattttg tgcttgaact taccaataaa attgtaagag
     6481 aacagaaatt aaccacgcta atggtaacgc attcaatgcg gcaagccctt gactatggcg
     6541 atagaaccgt gatgttacac caagggcaag tggcgtttga tgtttcgggc gagcaacggc
     6601 aaaaaatgga cgtgccggat ctgttacaac ttttccaaca aagtcgccac gagcagttga
     6661 gtgacgatgg attattactc ggcaattaat tttgcgatct gcatcgaaaa aatgaatttc
     6721 tccttttgtt tttggctgtc aaattttaaa taataagccc aaaaggaggt attcaatgtt
     6781 aagcattttc aaaacaccgg tagagaaaga aacgctagac gattgggcta aaatttcggt
     6841 tgatgtagcg aaagttgcga ttttggcaat tcctgttata ctttttggca aagaaccaac
     6901 gttgattaaa ttgactaact tagcattatt ggtattgagt atttatgttt ttttgacgct
     6961 tgggcgaaaa ttacggcagc taaaggaggt gttgtgatgg aactaggctg gaatttaacc
     7021 ataggtttgc taattttaaa cgtctttgcg tttgcttggc tttatattat taaccggatt
     7081 tctaaagaac aattatccaa aaatcaataa tatttaattt ttcacaagcg gttgtttttg
     7141 caaaatattt tgtaaattcg accgcttgcc tgtttttaaa tgacaaaata cgacgataaa
     7201 attcagcatg catttagcga aaatgggttg ctcagccaaa atatcagtgg atttcgacca
     7261 cgccaagcac agcttgaaat ggctcaagtg gtcgcaaaag cagtaaaatt tgcgacacct
     7321 gttgtggtag aggcgggaac cggcacaggc aaaacctttg cttatcttgt gccggcacta
     7381 ctttcaggca agaaaactat tctttcgaca ggttctaaaa acctgcaaga tcaacttttt
     7441 aatcgagatc ttcccactat tcaaaaagcc ctgaaataca aaggcaaaat tgcgttactc
     7501 aaagggcgtg cgaactattt gtgtttagag cgtttagatc aagtgaccgc aatgggcgta
     7561 cttggggata aatccgttct taccgattta aaaaaagtca gtaaatggca aaatgccact
     7621 aaaacagggg atttaagtga atgtattacc attgccgaag atagcccgat tctaccgcag
     7681 ttagttagca ccaccgagag ttgcttaggc tcggactgcc cgcattttaa agattgttat
     7741 gtggtacaag cccgccgtaa agcgatggag gcagacgtag tggtggtaaa ccatcaccta
     7801 ttctgtgctg atatggcagt aaaaaagacc ggttttggtg agttgatccc tgaagctgag
     7861 ctggtgatct ttgatgaagc tcaccaactg ccggatattg ccagccaata ttttgggcaa
     7921 tcgctttctt cccgccagtt atttgatatt tgtaaggata ccaatattgt ttaccgcact
     7981 gaactcaaag atctgtctca attaggcaaa gcggctgatc acttgacgaa agtagtgcaa
     8041 gatttccgat tattgatggg cggagaaggg cagattcgag gcaatttgcg agagttattt
     8101 cgtgataaaa aagtggtcga tggcttggta aaagtggctg aaaatattga ttttttaagt
     8161 gaagtggcga aaaaatcgct ggggcggtcg gaaacgttgg ataaaatttt cgagcggtta
     8221 gcagaagtta aggttcaact taaaaaatta atggatacta gtgtgacagg ctattgttac
     8281 tggtatgagg cgaatggacg atcctttggg ctgcatatta cgccgcttat ggtggcagat
     8341 aaatttggtg aacagttgaa gaaccagcaa attggttggg tgtttacctc agccacactc
     8401 gaagttgggg gcaaattcga tcatttttgt caacggctgg gcatcgaaaa tgcggagcag
     8461 ttggtgttac aaagtccgtt tgattaccaa catcaatctt tactctgtgt gccccgctac
     8521 ttgccggata ccaataaatc caatacttta actgctctcg ggcaattatt aaaaccggtg
     8581 attgaggcga ataaagggcg ttgtttcttg ctttgtactt cctattatat gatgcgaggt
     8641 ttagccgact ttttacgcga acacagttcg ctgaatgtgt tattgcaagg cgaaaccagc
     8701 aaaagccgtt tattggaaaa atttgtgaaa gaagatcaca gcgtgttggt ggcgacccaa
     8761 agtttttggg aggggattga tgtgcgaggc gatgatttat cgttggtgat tattgataaa
     8821 ttgccgttca cttcaccgga cgaaccatta ctcaaagccc gaatggaaga ttgtaagata
     8881 cagggcggtg atccgtttaa cgatattcaa attcccgaag cggtgattac cctcaaacaa
     8941 ggtgtagggc gtttaattcg tgatgtgacc gatagaggtg tagtgattat ttgtgattcc
     9001 cgtttggtga tgcgaaatta tgggcaaact ttcttgaaaa gtttaccgcc gtctagacgc
     9061 actagagatt tggggaatgt tattcaattt ttgaaacaaa aatagggtta caagcggtca
     9121 gatttctgca gatttttgca aaaaaacgga taaaaataac cgcttgttga ggagttatat
     9181 gttgtctaca ttgctgcgta tggttgcttc tttggcattg ttatttgtga tgctttattt
     9241 aggcaagtta atcgtttatc tattccccat cgggatcccg gatagtattt taggtatgct
     9301 tatcttattc ggctgcttgg ttatcggcat tgttaaagtg gaatgggtga taccgagcgc
     9361 gaaaccgctc acacgttata taacactatt tttccttccg atttgtgtcg aactcatcga
     9421 acatcttgag ctgttacgcc aaaatctgaa cacttttgta ttagcaacgg cattaagcac
     9481 cttagtttct gtggtcgcga ttggcgtgtt tgcacagtgg atttttcatt acaagagagg
     9541 gtaaaatgag ctatctttac actgtgttga cggtaatcat gtttattgcc ggtttgaaaa
     9601 tcagccaaaa actcaagagc agttttctga accctttctt aattgcactc gctttgctaa
     9661 ttggtgtatt actgattttt aatatccctt accaagacta ttatcaaggt aattccccct
     9721 tgaataactt acttggcgtt tctgttgtgg cacttgctta ccctttttat gaacaattac
     9781 cccatatccg taaaaaatgg cgacagattg tcgtgatttt gctgtttagt accatcatta
     9841 cgatgataac cgggcttggg ttttcattat tatttggggc aagccaagag atcttagccg
     9901 ccattttgcc taaatcggta tcaatgccaa tggcaattat tattacgaat gaaattaatg
     9961 gaaatgttgc aatcgcagcg gttggggtga tgatcgcagg cttagtggga tctattttag
    10021 gctttacgct tctgcgcctg gcaaaagtaa gaaatgtgat ggtgattggg ttaagtatgg
    10081 gagctgcttc ccacgcatta ggcacggcaa gatgcttaga gcatagtatg aaagccggta
    10141 gctatagttc tatcgcatta gtggcttgtg gtgtgctgtc ttctatattt gcacctttaa
    10201 tatttaacgt tatcgtcacg ttatgttact aaaaacagtg aaatctcaaa ccttatttgg
    10261 taactggctg aaatcaaggt acaataccgt gatttttcaa tgaaaataga gaattatgca
    10321 agaacaaata acacaagaaa aagatctttc tacgcttaaa acctttaagc gtttatggcc
    10381 gactatcagc ccgtttaaag cgggtctgat tacaggtgct gtcgctttag tattaaatgc
    10441 gttagtggat tctagtctta tctatctcct caaacccttg ctagatgaag gctttgggca
    10501 agctaataat gattttctga aattgatggc ggtgcttgta gtagttttta ttttagtgcg
    10561 cggtattacc aattatattg ccagttactg tttagcttgg gtgtcaggca aggtggtaat
    10621 gacattacgc cgccatattt ttcaacattt aatgtatatg ccggtaagct attttgataa
    10681 caacccgacc gggcgtttgc tctcacgagt gacttacgat accgaaatgg tggcgagttc
    10741 tgcttctcat tctttagtga ctattgtgcg tgaaggggct tatctgctgt cattgtttgt
    10801 ggtgatgatc tataccagtt ggcagctttc tattgtgtta tttgtgatgg ctcctatcat
    10861 tggggtactg atcagtttcg tttcaaaata ttttcgtcaa ttaagtcgca atatccaaag
    10921 ttcaatgggg gagcttactg tcacgacaga acaaatgctt aaagggcata aggttgtact
    10981 ttcctttggt gggcaggaaa ttgagaaagc acgttttgat cgagtcagta atgatatgcg
    11041 tcgtaaaggg atgaaagtcg tttctgctga tggcatttct gatggtgtgg tacagcttat
    11101 cgcctctttt gcgttatctg ctgtgcttta tgttgcgacc ttccccgagg tgatgagtga
    11161 gaatttaacc gcaggttcat tcacagtagt gttttcttcg atgatggcaa tgttacgtcc
    11221 tctaaaatca ctcaccaatg tgaactcgca attccaacgt ggaatggcag cctgccaaac
    11281 gttatttgaa tttttagatt taaaaactga aaaagatcac ggcttaatct ccgttgctaa
    11341 agctgaaggc aatgtggaat ttaaaaaggt aagctttagt tatgaaggta aagaggaaaa
    11401 agcactcgat aatatttctt tcaccattcc taaaggcaaa acagtagcat tggttgggcg
    11461 ttccggctcg ggtaaatcaa ctattgccaa tttgcttacc cgtttttatg atgtgactga
    11521 cggtcaaatt ttgcttgatg gaattaatat tcaagattac cgcttaaaaa acttaagaga
    11581 acaatgctcg gtggtttctc aacaagttca tttgtttaac gatactattg ctaataatat
    11641 tgcttatgct gcaatcgaca aatacagccg agaagaaatt attgctgctg caaaagctgc
    11701 acacgcaatg gaatttatcg aaaaattgga aaatggctta gacactgtaa ttggtgaaaa
    11761 tggcgcaagt ctttccggtg ggcaacgcca acgcttggca atcgctcgtg cattactgcg
    11821 aaattctcct gtgcttgtgc tggatgaagc tacctctgca ttagatacgg agtcagaaag
    11881 agcgatccaa tctgcacttg aagtgctaca gaaagatcgt acggtgttgg tcatagcaca
    11941 ccggttatca acgattgaaa aagccgatga aattttggta gtcgatcacg gaaatattat
    12001 tgagcgtggc agccatacgg aattgttagc acaaggtggg gcttataaac aactccatag
    12061 tttacaattc ggagcctaat ttgtagggga gaaatatgtt tctccccaat taatgataaa
    12121 aacagggcga aaaatatttc gtccctacaa taatttattt ggatactatg aaaaaactga
    12181 caaaactttt atctcttagt gctttactgg tcttaaccgc ctgtaattcg gtactaaatg
    12241 cctcaacaga ggtgcaacaa ccaacagtac aaattccgca tgacgatcca caatggcagc
    12301 agcatttagc gaaactgagc caaattcaag gctatactgc aacggggcaa tttggctata
    12361 tttcgcctga agagcgtttt tcttcccatt tcaactggcg ttatactaat ccaatccaat
    12421 ttgggttaga gctttcctcg aatctctcga ctaaatcact gaaattagag cgtaataaac
    12481 gaggcttaac ggtttcggac aatgagggta atagccgttc tgaccgtgat gttgatgcgt
    12541 taatgcaaga gattatcggt gtttcgtttc ctatcgatca gtttgcctat tgggtaaaag
    12601 gcttgcctga aaaagatggc aactatattg tgaatgaaaa acgccagctg tcgcaattta
    12661 gttatccgct taatggcacg ctttggaaag caagctatgt ggagtatcac gaagatcgtg
    12721 taccaaactt accgaagctg attgtgcttg aaaacggcac tcaaacgttg aagatccgca
    12781 ttgaaaaatg ggcgtattaa tgaagaaagt caccttaccc agcccggcaa aattaaacct
    12841 gtttttatac attaccaata agcgggcaga cggttatcac gagctacaaa cgctgtttca
    12901 gtttttagat tttggtgatg aaattgagat tgagatcaca gaaagttcag aggttgaatt
    12961 aattaatccg gtagaagggg tggcaactga ggagaatctc atttaccgag cagcaaaact
    13021 tttgcaaaaa acgaccgctt gtaggcaagg ctgccgtatt gggattaaaa aaaacctacc
    13081 gatgggcgga ggtgttggtg gtggatcttc taatgctgca acagtattag tcggtttaaa
    13141 tcacttgtgg aataccgagc tttcattgga aaaattggca gaattaggct taagtttagg
    13201 ggctgatgtg ccgatatttg ttagaggtat ggctgctttt gccgaaggcg tgggggaggt
    13261 gttaactcct tgtgatccac aagaaaaatg gtatgtagtg ctaaaaccag aagtgtcgat
    13321 ttcaaccgca gcggtgttta ccgacccgaa tttacctaga aatacgccaa aacgcccctt
    13381 agccgaatta ttatctttac cgtgggaaaa cgattgcgaa aaagttgtac gagaaaagta
    13441 ttctgcggtt gaagatctta tacaagaatt gttacaatat gctcagttta ggctaacagg
    13501 cacaggtgct tgtattttcg ccgaatttga aacaaaagca gaagccgagc aggtttttgc
    13561 acataaaccg gaagccgtct tcggttttgt ggcgaaaggg caaaatattt cgccattaca
    13621 tcaaatgtta ttccaaatct aaccatctta accttaagga tcaatccatg acagatatta
    13681 aactgtttgc gggcaacgca actccggaac ttgctaatcg tattgcaaaa catctttata
    13741 cctcattagg taatgcaaca gttggtcgtt ttagcgatgg tgaaattcaa gtacaaatca
    13801 atgaaaatgt gcgtggaggc gatattttta ttgtgcaatc cacttgtgca ccaactaatg
    13861 ataatttaat ggaattgatc gtgatggtag atgcgcttcg ccgtgcatca gctggtcgta
    13921 ttaccgcagt gattccgtat ttcggttatg cacgccaaga cagacgcgtg cgttcggccc
    13981 gtgtgccaat taccgcaaaa gtgattgctg atttcttatc cagcgtaggg gtagatagag
    14041 tcttaacctg cgacttacac gcagagcaaa ttcaaggttt ctttgatgtg ccggtagata
    14101 acgtatttgg ttcccctgtg ttaatcgatg atattttgaa aaaatccgat ttggtcaacc
    14161 ctatcgtggt ttctccagat attggtgggg ttgttcgtgc aagagcggtg gcaaaattat
    14221 taaatgatac cgatatggca attattgata aacgtcgtcc aaaagcgaat gtatcacagg
    14281 taatgcacat tatcggtgat gtggctgatc gtgactgtat tttagttgat gatatgatcg
    14341 atactggtgg tactttagtc aaagcggctg aagcgctgaa agaacgtggc gcccgtcgtg
    14401 tctttgctta tgccacacac gcggtatttt caggcacagc agctcaaaat ttagcgaatc
    14461 ctgctttaga tgaaattgta gtaactgata ctattccact gagtaatgag attaaagcat
    14521 taaataaagt acgtgtttta acattatccg gtatgttagc agaagcaatt cgccgtatta
    14581 gcaatgaaga atccatttca gcaatgtttg atgcctaatt tatgagaaaa aacccagtcg
    14641 aaagattggg tttttcatat ctgttcacta ctatatttag tttaagataa tttgtatgta
    14701 ttccctgatt cgtaaattac tttttgcact agatacggaa aaagcacatc aattctctat
    14761 tcaggcactt gctttagccg gaaaatcgcc tttttcgatt ctgccaacac ccgataatcc
    14821 gacccaagta atgggactca cgtttaaaaa tccaataggg cttgcagccg gagcggataa
    14881 aaacggtgaa gcgatagatg gttttgggaa attaggattt gggtttattg aggttgggac
    14941 tattactcct ctcgctcaag acggaaaccc taaaccgagg caatttcgta ttgtagatgc
    15001 agagggaatt attaaccgca atggatttaa taataaaggc gttgatgttt tagtagaaaa
    15061 tgtaaaaaat gcaacctata gtggtatttt aggtattaat attggaaaaa atgcggttac
    15121 accaattgag catagctttg atgactacca aatttgtttg cgtaaggttt accaatatgc
    15181 tgattatgtg gcggtgaata tttcatcacc caataccaaa aatttgcgca gtttacaata
    15241 tggtgaggca ttagatgatt tgctgcgaaa cctcaaaaat gagcaggcac aactttcgca
    15301 aaaaatgggg aaatatcgac cgcttgtttt aaagattgcg cctgatttaa ccgatgaaga
    15361 aatcgtttct gtagccgata gtcttattcg ttaccaaatt gatggggtga ttgccggcaa
    15421 tactaccttg tctcgtgaaa gtattgccgg attaccgtat tcggaacaac tgggtggatt
    15481 aagtggcaag ccattacact cattaagtac aaggttaatt tcaaaattat ctgccgagtt
    15541 gggcgagaga ataccaatta taggttgtgg gggagtccat tcgttagaga gtgggcagga
    15601 gaaagtgaat gcaggtgcta gtttattgca agtctattcc gcaatgattt accaaggacc
    15661 atcattaatt caaaccttag ccaaacacct tcagctgaac agttagggat agatttctag
    15721 ttaaaaatga ttggttaggt ttatttctgt catcttagtg gaatagatgg cggtattagc
    15781 tatctatcaa aaatagacaa aattgcct
//
LOCUS       DANMBQ010000050        15711 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.050, whole genome shotgun sequence.
ACCESSION   DANMBQ010000050 DANMBQ010000000
VERSION     DANMBQ010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15711
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.050"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(199..1074)
                     /gene="ubiA"
                     /locus_tag="PXE92_001311"
     CDS             complement(199..1074)
                     /gene="ubiA"
                     /locus_tag="PXE92_001311"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HDL5760563.1"
                     /translation="MNNETLFSKQKWIAYAQLMRFDKPIGTLLLLHPTLWALFIAAEG
                     MPPVAILAIFTLGVIVMRAAGCVINDYADREIDGHVKRTSQRPLATGRVTTTEAKVIF
                     AILLLFAFLLDLMLNRYAFLLSFVAVFLAVIYPFMKRFTHLPQVVLGMAFGWSIPMAF
                     GAVTETLPLECWLLFFANLAWTVAYDTQYAMVDRDDDLRIGVKSTAILFAQYDNKIIA
                     LLQFITLILLGLLGVVKDYHIGYFVVLALSATLFIYQCWLTKKRERSECFKAFLNNHY
                     FGLGVFVAILVGIYF"
     gene            complement(1067..1828)
                     /locus_tag="PXE92_001312"
     CDS             complement(1067..1828)
                     /locus_tag="PXE92_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HDL5760564.1"
                     /translation="MKQANRHKKIIELVNQLGYVSTEQLVAELNVSPQTIRRDLNEMA
                     ENNLIRRHHGGAAAPSNTENSDYTHRKQFFSHEKNAIAQQVAKLIPNGASLFLDIGTT
                     SEAVALALLSHKNLKVVTNNLNAAHILMQNEDCQITVAGGGLRSDGGLIGEETVRFIN
                     QFRLDFGILGISAVDMDGSMLDYDYHEVQVKRALMECSRQVVLVTDHSKFTRTAIARL
                     GNVKEVNYLFTDQDLPLELQTHLSQSDVIVKICNE"
     gene            complement(1895..3262)
                     /gene="purB"
                     /locus_tag="PXE92_001313"
     CDS             complement(1895..3262)
                     /gene="purB"
                     /locus_tag="PXE92_001313"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDL5760565.1"
                     /translation="MELTALTALSPIDGRYQDKVASLRPIFSEFGLLKFRVTVEVRWL
                     QKLASHTQINEVPVFSEKANDYLNQIVADFSLEDANRIKTIERTTNHDVKAVEYFLKE
                     KCEALPELQAVNEFIHFACTSEDINNTSHALMLKTAREEVLLPEWKKVIDAVAELAKC
                     YQHIPLLSRTHGQPASPTTMGKEMANVAYRLQRQYKQLENLEILAKINGAVGNYNAHL
                     SAYPEIDWHTFSQEFVESLGVTWNPYTTQIEPHDYIAEFFDCVARFNTILIDFDRDMW
                     GYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGQKLPISRWQ
                     RDLTDSTVLRNLGVGLGYALIAYASTLKGISKLEVNEQHLRDELNQNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDETAMREFIDKLEIPENEKNRLKEMTPASYIGYAVE
                     LVDKL"
     gene            complement(3296..3925)
                     /gene="hflD"
                     /locus_tag="PXE92_001314"
     CDS             complement(3296..3925)
                     /gene="hflD"
                     /locus_tag="PXE92_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HDL5760566.1"
                     /translation="MADYHDITLAYAGVCQAATLVQQFAHKGMADREAFKCALESLLI
                     TQPESTLSVFGDDLSHLKMGLETALAQTGGGNGKLDTEVGRYWISLLALSQKLNKNPE
                     AKQQLAQRLQQVERQLALYEDNVMADQMIANLAAIYSDIISPLGTKIHVMGMQDYLVR
                     PDIQNKIRASLLAGIRAGILWQQVGGSRWQFLFSRKKIFNQAQKFYRQI"
     gene            complement(4057..5721)
                     /gene="cydC"
                     /locus_tag="PXE92_001315"
     CDS             complement(4057..5721)
                     /gene="cydC"
                     /locus_tag="PXE92_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HDL5760567.1"
                     /translation="MKSLFPFFALYQTHFGRLLLGVVLAILGLAASIGLLSLSGWFLA
                     ASFLAGNALIFNFFYPSSGVRGLAVGRTISRYFERLVTHDATFRVLANLRASVFKKLI
                     PLSPSGLNRFRNSELLNRLVADVDTLDTLYLNLVSPFVSAVMIIAFMAIGLSFVSVPL
                     MLIICGTLLVLLAVIPTVFYRLGLKLGRNAIQSRANYRSQFIEWVQLNAEFLLFGNLN
                     QMSEKLQQTEQQWLNAQSKESRLSGLSNSLIMLSNGILTCVVIYLVSTSINVPTAKYP
                     EALIALVIFCVMASAEILSPIGIAFLHLGQVITAAERISEITEQQPNVTFGSKAEWQN
                     LSQNQPLVRCENVSFAYYGEQNVLNNLSFKVLKGQKVAILGKTGSGKSTIFQLLNRNY
                     DPTSGQIWLNNCKIDEYSEPMLRSKLVTLSQRVHIFSQTLKDNLLMGNAQATDEQMQE
                     AVRKVGLGHLLETDGLNLWLGEGGRPLSGGEQRRLGLARLLLSSAELVLLDEPTEGLD
                     RETEQQILNLILTHCCDRTLIMITHRQSGLDKFDVVYRIDNGRLVG"
     gene            complement(5721..7487)
                     /gene="cydD"
                     /locus_tag="PXE92_001316"
     CDS             complement(5721..7487)
                     /gene="cydD"
                     /locus_tag="PXE92_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HDL5760568.1"
                     /translation="MEKQRQRELQKWLKSQQKVIKKYMHLNILLGSFSSLCMIGQMWL
                     IATMLDKMLIGKQSPNSFLVEIMLLFCCFAARAFFIFLRERVGFKAGQTLRLHLRRQI
                     LAKMEAVGPMSIQQKPAGSWATLMLEQVENLHNFYARYLPQQFLSLIVPLLILCFVFP
                     INWAAGAILFATMPLLPLFMILAGMKAVEANQRNIGILSRISGQFLDKLKGLETIRLF
                     GQAEKQTEQIYQSTEDFRISTMDVLKMAFLSSAVLEFFTAVSIAVTAVYFGFIFLGEL
                     DFGYYGTGVTLFIGFFCLMVAPEFYQPMRELGVFYHDKAAAISAADNIETFLKEKVKT
                     QGGNLQENVENQPLVIQAKDCVIFSPQGKALTQALNFELNAHQHIALVGQSGAGKSSL
                     MNMLLGFLPYEGSVTINGTELRDLNLSQWRAKLAWVGQNPQLMHGSLKENILIGNPNA
                     TDSELAKALQLSKADEFVARLGLEHQVQDSNIGISGGQAQRIAIARALLRPYELLLLD
                     EPTASLDMDSEQQVLAALHNLSREQTTLMITHRVEDLTQCDEIWVMKQGQIIQKGRFT
                     ELEHTGFFAELIHNELVHQGEI"
     gene            complement(7602..11699)
                     /locus_tag="PXE92_001317"
     CDS             complement(7602..11699)
                     /locus_tag="PXE92_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB"
                     /protein_id="HDL5760569.1"
                     /translation="MTDENKQTATNQTDSAQEPQATQPKKSKWRFLKHGFCLTFILLL
                     LAILFLCTGYGQRKVLSWVDKFVEPLQLGQVQGSLQDGLQLSDARFVMDGVNVTVGQA
                     DLHIGFSCLLHYEMCLNNLSLKDTEVLIDTTKLPPSQPKEETEPFTELNLPLGISAQN
                     INLENIKVKVDDMDIHLNHFHTALSGKGRAITVHPTQLEGLNLLLALKLDETDTEQAV
                     DFAQKNAKTEALSATNPQEIADKVIQEAVEKTSEKVVEGFHQLQRKTVAQAEQVDNKV
                     DWAAIKAQLAQPLLDKNIRFSLPLDLNIEQIDIANVAIAQKAKDEKGNLIEPISLLNV
                     ASLQLQAQAKDQHINLKSLDFKSDQGDLTASGSLSLQDNYPLSWTLSGHEAKTAKVKL
                     PFNQIEASLSGELYDKTSLKVKTAGAISASLEGNVALAQAKTPFDLSLKSESMRYPFA
                     PQQNGDVLSLENIAMRLNGNLLDYALEAKVSAKGMGVPASSASLTGKGELTHFNIQDL
                     SLNTLEGTAKIDGLVDWSEGVAWRSNLKLQHINTKSLLADWPAVLSGSLSSEGYAGRG
                     NSASGWKADVSNIDIKGSLLQKNLHLSGNLKADHQQLLDVPGLSLVYGENKIDLKGVL
                     GEKSDFYADIKAPNLQGLVPNLKASVNGNAKLSGKVSEPNIDLDLVASNVGYEQFKLQ
                     NLTAKGKITTEKTIQGDLTLGLRQFAYNEIKVGNATLLLKGNEENHSLKLSAKGNPVG
                     ADLQISGKFDRLKEIWEGQLSQVSIQSTEFGQFQADKAVNVKYDNKAINANISAHCWH
                     NRKINLCFPTAFNAGVEGKVPFEIRNFDLAVLQQFLEKNSQLSGIVNAKGDAAWFKNK
                     QPQVNLDLTSNAIKFIQKMEGGKSFPLTVSPLKIDLKMSDNNLTLKSDLRVENNGRLS
                     TDLVMKDLSKARALSGNIHLDQLSLKLIRPLLERGDSVDGNVNARLTVSGTATSPLLH
                     GNLNVTELKARSVTMPFDITGGNLAMNFHGATSTLSGKLQTKQSELRLEGDADWRDLN
                     AWKTRVHAQANRFQVDIPNIAKVAVSPDIQVTATPTLLTLSGNVDIPWARIEVEQLPE
                     SAVSVSGDEVIMDGSVKNKVPFSQRNIPAQTSGGMAINADIKINIGNDVKLKAYGLNS
                     NVNGLLSVRQGKQGLGLYGQVHLREGRFAAYGQDLLIRKGDISFAGSPSQPTLDIEAI
                     RNPEAMEDPTITAGVRVTGLADNPTVKVFSDPAMSQNEALSYILTGRSLESSGDTSSS
                     NAVAAALLSMSLSKSSKLVGDVGSTFGLKDLSVTTAGIGDNTKVEVSASLAPKFRVKY
                     GVGIFAPLTELTLRYNLTPRLYLQWVSSINQAVDLMYRFEFDELF"
     gene            complement(11780..13615)
                     /locus_tag="PXE92_001318"
     CDS             complement(11780..13615)
                     /locus_tag="PXE92_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor"
                     /protein_id="HDL5760570.1"
                     /translation="MNTKLHFLTFCCLVAFASMAQANQEQRLSDVDRERVENLQEKLA
                     EDSDDEPEIEPLVTLEVKGIQGKDAKKNVELYLDQIANEYADGSERYQYLVQTTVDKA
                     LRALGYYNSRYQFVQLPQEGKKPLLVLNVELDKETVKIDETDIVLQGDAKTDEDFAHL
                     VSKAPKQGSRLNHKTYDNFKGDIESTAFSKGYFDGHWLYHRLEVYPTDHKADWRLGYD
                     SGKRYHYGQIRFVDSQIKEEYLQNILKIHSGEPYLANDLSILTQDYLSSNWFSSVMVE
                     SHLNEQDKLVDLNVLFQPKKRNEVEIGIGYETEVGPRLQLNWKKPWLNSRGHSIESRT
                     YVSKPEQTFEFGYNIPLREDPLHYYYQLSGTLENEDQNDTKSTAATLGLQRFWTHETG
                     WSFSVGLKARYDSFTQANDRFKTLLVYPTASLNRTRTDGKPYPLWGDTQKLTVNWGSR
                     AVGSDVNFYSYKASTSWARTYFDNHRFYLRAELGYLKANQFERIPPALRYFAGGDMSV
                     RGFGYKDISPRDPSNGKRVGGSHLATGTVEYQYQVYPNWWGAIFYDAGLASNKFKTQD
                     LYYGTGLGVRWASPIGAIKFDVATPVKSPDNSKGIQIYIGLGSDL"
     gene            complement(13627..14472)
                     /locus_tag="PXE92_001319"
     CDS             complement(13627..14472)
                     /locus_tag="PXE92_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HDL5760571.1"
                     /translation="MFKQINKRLNFNIFLQMFVLFTPLVQAAQMAIVIDDVGYRIKED
                     REILALPKAVSVAIIPVAPYATERAKDAYNQKRDILIHLPMEPKSKQPIEEGGIHIGD
                     NEEKIRKLIHTSRGQVPYAIGLNNHMGSGATSDSATMQHLLKVLKENTLFFLDSKTIG
                     SSVAAKTARQFGINTLERDIFLDDSDLLADVQKQFAHAINHARKNGVAVVIGHPRKNT
                     ISVLKQNLAQLPQDIELVSVGNLWRNEKTVPDKPFIMLFEQEPALSSVPPYDSIPLLR
                     GIPKE"
     gene            complement(14473..15636)
                     /locus_tag="PXE92_001320"
     CDS             complement(14473..15636)
                     /locus_tag="PXE92_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL5760572.1"
                     /translation="MLVKRINSYCWTAIFSGVISFSTPFSFANNLNQIQQKIQQQTSK
                     INEQKQKRNALQSTLKNQEVEMGKVLDKLQKTEMSLTEVRQTIKATETEIARLEKLEK
                     QQKEKLKEQLDSAYRSGVNPSVLERLMSEEAKNAERMTAYYQHMNNIRIDAIVEIRKT
                     QADLKARRDELKGQQKDHQTQLNEQKKQEKDLKKVQSQRESTLRLIDKTLEQDQSRLE
                     NLRSNEQALKQQLEQAQREAQQAEKREQQREKQAKSGQSKTTENVERTPIKAGRYTMP
                     VSGNIITPFGNNWHGVVIGASAGTSVRAMASGRVIMAQWLAGYGNMVAIDHGNGDISL
                     YGYNQSISVSKGSRVQGGQVIAKVGNSGGQSRSALYFGVTRKGTPINPLNLVK"
BASE COUNT         4398 a         3525 c         2939 g         4849 t
ORIGIN      
        1 gtaatgtccc ttttttgaat gtctactaca aaatgggata ttttacaaac cgattgacta
       61 atgaagcaag aatataatta actacaactg gatatatttt gcaaatttcc cgataaattt
      121 caccgcttgt agataaaaac cgtagataaa aaccatagat aaaaaatagg agctaaacat
      181 ttttagcccc taccgtcatc agaaataaat cccgactaaa atcgccacga acacacctaa
      241 gccgaaatag tggttattta gaaacgcttt aaagcattcg ctacgttctc tttttttggt
      301 cagccaacat tggtagataa acagcgtggc acttaaggct aatacgacaa aatagccgat
      361 gtgataatct tttaccacgc ccaataaccc caataaaatc aaggtgataa actgtaataa
      421 cgcaataatt ttattatcgt attgagcgaa taaaattgca gtggatttaa ctccaattcg
      481 taaatcatcg tcacgatcaa ccattgcata ttgggtgtcg taggcgactg tccacgctag
      541 attggcaaaa aacagcagcc agcattcaag tggaagagtt tccgttaccg caccaaatgc
      601 catcggaatc gaccaaccga atgccattcc aagcactact tgtggcaagt gggtaaaacg
      661 cttcataaag ggataaatca ccgccagaaa aactgccaca aaggaaagca gaaacgcata
      721 gcggtttagc attaaatcga gcagaaaagc gaacaacagc aagatggcaa aaatgacttt
      781 tgcctcagtg gtggtcactc tgccggtagc taatgggcgt tgagaggtgc gtttaacgtg
      841 tccgtcaatt tctctatcgg cataatcatt aatcacacaa cctgccgcac gcataacgat
      901 taccccaagg gtaaaaatgg ctaaaatcgc aacaggcggc attccctctg cggcaataaa
      961 taacgcccat agtgtggggt gtaataataa taacgtgccg atgggtttat cgaaacgcat
     1021 taactgggcg taggcaatcc atttttgttt agaaaaaaga gtttcgttat tcattacaaa
     1081 ttttgacgat aacgtccgat tggcttaaat gagtctgtaa ttctaacggt aaatcttgat
     1141 ctgtaaacaa ataatttact tctttaacat ttcctaaacg tgcaatagct gtacgggtaa
     1201 actttgaatg atcggtcact aaaaccactt gtcgggaaca ttccattaat gcacgcttta
     1261 cctgcacttc gtggtaatcg taatcgagca tagagccgtc catatccacc gcactaatgc
     1321 ctaaaatccc aaagtccaaa cggaattggt taataaagcg aaccgtttct tctccgatta
     1381 gcccgccatc acttcttagc cctccgcctg ctaccgtaat ttggcaatct tcattttgca
     1441 tcagaatatg agccgcattt aaattattgg taactacttt taaattttta tgcgaaagta
     1501 aggctaatgc cactgcttct gaagtcgtgc caatatctaa aaataatgat gctccatttg
     1561 gaatcagttt tgccacctgt tgggcaatcg catttttctc gtgtgagaaa aattgcttgc
     1621 ggtgggtgta atcactattc tccgtattgg aaggagcggc tgccccaccg tgatgacggc
     1681 gaatcagatt attttctgcc atttcattca gatcacggcg aatggtttgc ggactcacat
     1741 tcaattcagc cactaattgc tcggtactca catagccaag ctgattaacc agctcaatga
     1801 tctttttgtg tctgtttgcc tgtttcatat ttcctctttt gcaaataatt tgcagaaaaa
     1861 gaccgcttgc aagcggtctt ttttcagtta aattttacaa tttatcaaca agttcaaccg
     1921 catagccgat atagcttgcc ggtgtcatct ctttcaaacg atttttttca ttttccggaa
     1981 tttccaactt atcgataaac tcacgcattg cggtttcatc aacccgtttg cctcgagtca
     2041 gctctttaag tttttcatac ggtttttcaa tgccataacg acgcataaca gtttgaattg
     2101 gctctgccaa tacttcccag ttttggttga gttcatcacg caagtgttgt tcattcactt
     2161 ctaatttgct aatacctttt aaggtggacg cataagcaat taacgcataa cctaaaccta
     2221 cacctaaatt acgcaacacg gtggagtcag ttaagtcacg ctgccagcga gaaatcggca
     2281 atttttgccc caaatgagcc attaccgcat ttgccaagcc aagattgcct tcggaatttt
     2341 caaaatcaat cgggttcact ttatgtggca ttgtgctaga gccgatttca ccggcaatag
     2401 tgcgttgttt gaagtgattt aaggcaatgt agccccacat atcacgatca aaatcaatta
     2461 aaatcgtatt aaaacgagcc acgcaatcaa agaactccgc aatataatcg tgcggttcaa
     2521 tttgggtggt gtatgggttc cacgtcacac ctaacgattc cacaaattct tggctgaaag
     2581 tgtgccaatc aatctccgga tatgctgata aatgtgcgtt atagttgccc actgctccat
     2641 tgattttagc gagaatttct aaattttcta actgtttata ttggcgttgt aaacgatatg
     2701 ccacatttgc catctcttta cccattgtgg tcgggcttgc cggctgaccg tgtgtgcgag
     2761 aaagcaacgg aatatgttgg taacatttcg ccagctctgc tacagcatca atcacttttt
     2821 tccattcagg taataatact tcttcacgag cggttttaag cattaaagcg tgcgaagtat
     2881 tattgatatc ttcagaagta caagcaaaat gaataaattc attcaccgct tgtaattcag
     2941 gcaacgcttc acatttctct tttaggaaat actccaccgc ttttacatcg tggttggtgg
     3001 tacgttcaat cgttttaatc cgattggcat cttctaacga aaaatcagcc acaatttggt
     3061 ttaggtaatc gtttgctttt tcagaaaaca ctggaacttc attaatttgt gtatgcgatg
     3121 ccaatttttg taaccagcga acttccaccg tcacacggaa ttttaataag ccaaattcac
     3181 taaaaatcgg acgaaggctc gcaactttgt cttgataacg tccatcaatc ggggataacg
     3241 cagttaaagc ggtaagttcc attgttttat attctccaaa taggtaaatg ttcggttaga
     3301 tttgacgata aaatttctgt gcttggttaa aaattttctt gcgtgaaaat aaaaattgcc
     3361 aacggcttcc gccgacttgc tgccacaaaa taccggctcg aataccggct agtagcgagg
     3421 ctcgaatttt attctgtata tccgggcgaa ccaagtaatc ttgcattccc atcacgtgaa
     3481 ttttcgtacc taacgggctg ataatatcgc tataaatagc ggctaaattg gcaatcattt
     3541 gatctgccat cacattatct tcatacaggg ctaactggcg ttccacttgc tgtaaacgct
     3601 gggctaactg ttgttttgct tcagggtttt tattgagttt ttggctaagg gcgagcaggc
     3661 ttatccaata acgtccgact tcggtatcta atttgccgtt accgccgcca gtttgagcta
     3721 atgcggtttc taagcccatt tttaaatggg aaagatcatc gccaaataca cttaacgttg
     3781 attccggctg agtgattaac aggctttcta aagcacactt aaaagcctct ctgtctgcca
     3841 tgcctttatg tgcaaattgt tgcactaacg tcgccgcttg gcaaacgccg gcataagcaa
     3901 gggtaatatc gtggtaatcc gccatctctg taaaattcaa tatgataaaa cattagtggg
     3961 aatatagcat tttttcagct tcttttgaat ggcaaaaggc atttattcta ttgaaaaata
     4021 aatgcctttt cattaatacg caatttgctg caaaaactat cctaccaatc gcccattatc
     4081 tattcgataa accacatcaa atttatccag tccgctttgg cggtgagtga tcataattaa
     4141 ggtgcgatca cagcagtgag tcaaaattag gtttaaaatc tgctgttcgg tttctctgtc
     4201 cagtccttct gttggctcat caagtaagac taattcagca gaactcagga gcaaacgggc
     4261 aagccctaaa cggcgttgtt cgccaccaga aagcggtctg ccgccctcgc ctaaccataa
     4321 atttaagccg tctgtttcaa gcaaatgccc taagcctact tttcttactg cttcttgcat
     4381 ttgttcgtct gtagcttgag cattccccat taataaatta tcttttaggg tttggctaaa
     4441 aatatgcact cgttggctta aggtaactaa ttttgagcgt aacatcggct ctgaatattc
     4501 gtcaatttta caattattca gccaaatttg accgcttgta gggtcgtagt tgcggtttaa
     4561 cagttggaat atggtcgatt ttccgctacc cgttttacct aagattgcca ctttctgccc
     4621 ttttaatacc ttaaaggaaa gattatttag tacgttttgc tcgccgtaat aagcaaagct
     4681 cacgttttca cagcgtacaa gcggttgatt ttggctcaaa ttttgccatt ctgccttgct
     4741 accaaatgtt acattaggct gttgttcggt aatttcacta atccgctcgg cggcggtaat
     4801 cacttgccct aaatgcaaaa aggcgatacc aatcggggaa agaatctccg ccgatgccat
     4861 tacacagaaa atcactaacg caattaaggc ttcagggtat tttgcagtgg gcacattaat
     4921 cgaagttgaa accaaataga tcaccacaca agtcaaaatg ccgttggata acattatcaa
     4981 gctatttgat aagccggaca gtcggctttc tttgctttga gcgttcagcc attgttgttc
     5041 agtttgctgt agtttttcgc tcatttggtt caagttgcca aagagtaaaa attctgcatt
     5101 taactgtacc cactcaataa attggctgcg gtaatttgct cggctttgta ttgcattacg
     5161 ccctaatttc aaacccaatc gataaaatac ggtaggaata acggcaagca ataccaatag
     5221 tgtgccgcaa atgatcagca ttaatggcac ggaaacaaaa gaaagcccga ttgccataaa
     5281 tgcaataatc atcactgcac tgacaaaagg cgagactaaa ttcagatata gggtgtctaa
     5341 cgtatccaca tctgccacca agcggtttaa caattcgctg tttctaaagc gatttagccc
     5401 gcttggactc agtggaatca attttttaaa gacgctagca cgcaaattcg ccaatacccg
     5461 aaaagtcgca tcgtgggtga ctaaacgttc aaagtaacgt gaaattgtcc gccctactgc
     5521 caaccctctc acccccgatg aagggtagaa aaagttaaaa ataagcgcat tgccggctag
     5581 aaatgaggca gctaaaaacc aaccggaaag gctgagcaaa ccgatacttg ccgctaatcc
     5641 taaaattgcc agcacaacac ctaataatag tcgcccaaaa tgggtttggt agagagcaaa
     5701 aaacgggaac aacgatttca ttagatttct ccctgatgca ctaattcatt atgtattaat
     5761 tccgcaaaaa agccggtgtg ttctaattca gtgaaacgac ctttctgaat gatttgccct
     5821 tgtttcatca cccaaatttc atcgcattgg gttaaatctt ccactcgatg agtaatcatt
     5881 agcgttgttt gctctcggct gagattatgc agagcggcta acacttgctg ttccgaatcc
     5941 atatcaaggc ttgcagtcgg ctcgtctaac agtaataatt cgtacgggcg aagcaacgct
     6001 cgtgcaatcg caatccgctg tgcttgcccg ccagagatac cgatattact gtcttgcact
     6061 tgatgctcca accctaaacg tgccacaaat tcatcggctt ttgaaagctg taatgccttg
     6121 gctaattcag aatctgtcgc attagggttg cctattaaaa tattctcttt caaactgcca
     6181 tgcattaatt gcggattttg ccccacccac gctaatttcg ctcgccattg gcttaaattt
     6241 aaatctcgca gttcggtgcc gttaatcgta accgaccctt cataaggcaa gaaaccaagt
     6301 aacatattca ttaatgaact ttttcctgca ccactttgcc caaccaaagc gatatgttgg
     6361 tgtgcattca actcgaaatt taacgcttgg gttaaggctt tgccttgtgg tgagaagatc
     6421 acgcaatctt tggcttgaat cacaagcggt tgattttcaa cattttcttg caaattgcca
     6481 ccttgcgttt tcaccttttc ttttaagaaa gtttcgatat tatctgcggc actaatcgct
     6541 gctgccttgt cgtgataaaa cacgccaagt tcacgcatcg gttggtaaaa ctcaggtgcc
     6601 accattagac aaaagaagcc gataaataag gtcacgcccg taccataata gccaaaatcc
     6661 agctcaccta aaaaaataaa gccaaaatag accgccgtca ccgcaatcga taccgccgtg
     6721 aaaaactcca ataccgcaga ggataaaaac gccattttta gtacgtccat cgtactgatt
     6781 cggaaatctt cggtgctttg gtagatttgt tcagtctgct tttccgcttg cccaaataag
     6841 cgaatggttt ctaaaccttt taatttatct aagaactgtc cgctaatacg ggaaagaatg
     6901 ccgatattac gctgatttgc ctccactgct ttcattccgg ctaaaatcat aaataaaggt
     6961 aataatggca ttgttgcaaa taaaatagcc cctgctgccc agttaatcgg gaatacaaaa
     7021 cagaggatca gtaatggcac tatcagcgat aaaaattgct gtggcaaata gcgtgcgtag
     7081 aaattatgta gattttccac ctgctcgagc attaaggttg cccagctgcc cgccggtttt
     7141 tgttgaatgc tcatcggccc gactgcttcc attttggcta gaatttggcg gcgaagatgt
     7201 aaacgcaagg tttgccctgc tttgaaaccg acacgctcac gcagaaaaat gaagaatgct
     7261 ctggcagcaa aacaacagaa taagagcata atttcaacca gaaagctatt cggtgactgc
     7321 tttccgataa gcattttgtc taacattgtg gcaatcagcc acatctgtcc aatcatacat
     7381 aaactactga aactccctaa cagtatgttt aagtgcatat attttttgat gactttttgc
     7441 tgacttttaa gccatttttg taattcgcgt tggcgttgtt tttccataat tttgtcaatt
     7501 tttttgtttt ttcaaccgct tgtaaatcgg gtttgccatt ctactataaa gcaaaaaggt
     7561 tgttaatggc gaaacattaa caacctttca ttcagcctta actagaatag ctcgtcaaat
     7621 tcaaagcgat acattaaatc taccgcttgg ttaatacttg agacccattg taagtacaat
     7681 cttggcgtta aattatagcg taaggttaat tcggtaagcg gtgcaaaaat gcccacgcca
     7741 tacttcactc tgaatttagg ggcaaggctg gcacttactt ctactttggt gttatcgcca
     7801 atacctgcgg tggtcacgct taaatctttg agtccgaaag tgctaccaac atcacccacc
     7861 aatttactgc tttttgataa gctcatactg agtaatgccg ctgcgactgc attactggag
     7921 ctggtatcgc cactgctttc caatgaacga ccagttaaaa tataggaaag tgcttcattt
     7981 tgcgacattg ccggatcaga gaatactttt accgttggat tgtctgccaa accggtcact
     8041 cttaccccag ctgtaatggt cggatcttcc attgcctccg gattgcgtat agcttcaata
     8101 tctaaggttg gctgagacgg tgagccggca aaactaatat cacctttacg aatcagcaag
     8161 tcttgaccat aagcggcaaa tcgtccttca cgcaaatgaa cttgcccgta aagccctaaa
     8221 ccttgtttgc cttgcctgac agacaataag ccattcacgt tactgtttaa accataggct
     8281 ttgagtttga catcattacc gatgttaatc ttaatatctg cattaattgc cattccacct
     8341 gaggtttgag ccggaatatt acgttggcta aacggcactt tatttttcac agagccgtcc
     8401 ataatcacct catctccact tacactgacc gcactttcag gtaactgctc gacttcaatt
     8461 cttgcccaag ggatatctac atttccactt aaggttaaaa gagttggcgt tgccgtcact
     8521 tgaatatccg ggctaactgc cacttttgcg atattaggaa tatccacttg gaaacggtta
     8581 gcttgagcgt gaacccgtgt tttccacgca tttagatctc gccagtctgc atcaccctcc
     8641 aaacgcagtt cgctttgttt ggtttgtaat ttaccgctta aagtcgatgt tgccccgtgg
     8701 aaattcattg ctaaattccc acctgtaata tcaaacggca ttgtaacaga gcgagctttt
     8761 aactctgtaa cgtttagatt tccgtgcaat aacggagagg ttgcggtgcc gctcacggta
     8821 agacgagcat tcacattgcc atcaaccgaa tcgccccgtt caagtagcgg tcgaatcagc
     8881 tttaagctta attggtcaag atgaatattg ccggataacg cacgagcctt acttaaatct
     8941 ttcatcacta aatcagtcga aagtctgccg ttattttcga cccttaaatc agatttaagg
     9001 gttaaattat tgtcagacat tttcagatca attttaagcg gtgaaacggt gagtgggaaa
     9061 ctttttcccc cctccatttt ttgaataaat ttaatcgcat tagaggttaa atccagattc
     9121 acttgaggct gtttgttttt aaaccaagct gcatcgcctt tggcattcac aatccctgaa
     9181 agctggctgt ttttctccaa aaattgttgc aataccgcta aatcaaagtt acggatttca
     9241 aaaggcactt taccctcaac accggcatta aatgcagtcg ggaaacaaag attaattttc
     9301 cggttatgcc aacaatgtgc ggaaatattg gcgttaatgg ctttattgtc atatttcaca
     9361 ttcactgctt tatctgcttg gaattgacca aactcggtgg attgaatcga aacttggctt
     9421 aattgccctt cccaaatttc tttcaaacgg tcaaattttc cagaaatttg caaatcagca
     9481 ccaaccggat tgccttttgc acttaatttc aagctatgat tttcttcatt tccttttagc
     9541 aataaagtgg catttcccac tttgatttca ttataggcaa attgacgtaa ccccaaggtt
     9601 aaatcccctt gaatggtttt ctcagtggta attttgcctt ttgcggttaa attttgcagt
     9661 ttaaattgct catagcctac atttgaggcc actaaatcta aatcaatgtt aggttctgaa
     9721 accttacccg ataatttggc attaccattc acgctggctt ttaaattcgg cactaaccct
     9781 tgcaaattag gggctttaat atccgcatag aaatcagatt tttcgcctaa cacgcctttt
     9841 aaatcgatct tattttcacc atacaccagc gataagcccg gaacatctaa aagttgttga
     9901 tgatcggctt ttaaattacc gcttaagtgt agatttttct gtaataacga acctttaata
     9961 tcaatattcg agacgtccgc tttccatccg ctagctgaat tgccccgtcc tgcataacct
    10021 tcggaagata aagaaccgga caataccgcc ggccagtctg ccagtaggga tttagtgtta
    10081 atatgctgaa gtttcaaatt tgaacgccac gcaacgccct cgctccaatc cactaaaccg
    10141 tcgatcttcg ccgtaccttc cagcgtattg agacttaaat cttgtatatt aaaatgggtt
    10201 aattcccctt tgccagttaa actagccgag cttgcaggca cgcccattcc tttggcactg
    10261 actttagcct ccaaagcgta atccaggaga ttgccattaa gcctcatggc gatattctct
    10321 aaactcagca catcaccatt ttgctgagga gcaaacggat aacgcattga ctcactcttc
    10381 agcgataaat caaagggagt tttcgcctga gccagtgcaa cattgccctc caacgaggcg
    10441 ctaattgcac cagccgtctt cacttttagg ctggttttgt catatagctc accggaaaga
    10501 gaggcttcaa tttgattgaa cggcaatttt actttcgccg tttttgcctc gtgaccactt
    10561 agcgtccaac ttagcggata attatcttgt aacgataaag aaccgcttgc ggttagatcc
    10621 ccttggtcgc ttttgaaatc taaacttttt aggttgatat gctgatcttt tgcttgagcc
    10681 tgaagctgta aagaggcaac atttaacaat gagatcggct caatcaaatt ccctttttca
    10741 tctttagctt tttgagcaat cgctacattc gcaatatcaa tctgttcaat attgagatca
    10801 agaggcaaac taaagcgaat atttttatcc aataacggct gtgctaattg tgctttaatc
    10861 gctgcccaat ccactttatt atccacctgt tcggcctgtg caacagtttt tctctgtaat
    10921 tggtgaaagc cctctacgac tttttcactg gttttttcca ccgcctcttg aatcacttta
    10981 tcagcaatct cttgtggatt tgtcgctgat aacgcctctg tttttgcatt tttttgtgca
    11041 aaatcgaccg cttgttcagt atcagtttcg tctaacttta aggctaaaag cagatttagc
    11101 ccctctaact gtgtcgggtg aacggtaata gcccgccctt taccagaaag tgcagtgtgg
    11161 aaatgattaa gatgaatatc catatcatca actttgacct tgatattctc taaattgata
    11221 ttttgagctg aaatccccaa tggcaaattt aattcggtga aaggttcggt ctcttctttt
    11281 ggctgagaag ggggtaattt agtcgtatca atcaacacct ctgtatcttt aaggctgaga
    11341 ttattcaaac acatttcata gtggagcaag cagctaaaac caatatgcag atctgcttgc
    11401 ccaaccgtta cattcacacc gtccatcaca aatcgggcat cagaaagctg taacccatct
    11461 tgcaggctac cttgcacttg cccaagttgt aatggctcta cgaatttatc tacccagctt
    11521 aacactttac gttgcccgta acctgtgcat agaaagagaa tggcgagtaa aagtagaata
    11581 aacgtcagac aaaagccgtg cttcaaaaac cgccactttg attttttagg ctgtgttgct
    11641 tgtggctctt gtgctgagtc cgtttgattt gtggctgttt gtttattttc gtcagtcata
    11701 atcgtgcata tttatgaggt gataaaaagt aaacaagcgg tatgcgaaat tttactgaaa
    11761 ttcgaccgct tgttttcatt tacagatcgg aacctaaacc aatataaatt tgtattcctt
    11821 tggaattatc tggtgatttt accggcgtgg cgacatcaaa tttaatcgcc ccgataggtg
    11881 atgcccaacg cacccctaag cccgtaccgt agtagagatc ctgagttttg aatttattcg
    11941 atgccaagcc tgcatcataa aaaattgcac cccaccaatt agggtaaacc tgatactgat
    12001 attctactgt gcctgtggct aaatgagagc ctccgacacg tttgccatta ctcggatcac
    12061 ggggggaaat atccttatag ccaaagcccc gcacactcat atcgccaccg gcaaaatagc
    12121 gtaacgccgg tggaatacgt tcaaattgat tggctttcaa ataccccaac tccgccctta
    12181 aatagaaccg atggttatca aagtaagttc tcgcccaaga tgtcgaggct ttataactat
    12241 aaaagtttac atctgaacct actgcacgac tcccccagtt taccgttaat ttttgtgtat
    12301 ccccccataa tgggtaaggc ttgccatctg ttctggttcg attcaatgat gccgttgggt
    12361 aaactaataa ggttttaaat cgatcattag cttgagtaaa agaatcgtaa cgggctttta
    12421 aaccaacaga aaatgaccaa ccggtttcgt gagtccagaa acgttgtaag ccaagggtgg
    12481 cagcggttga ttttgtatcg ttttgatctt cgttttctaa agtgccggat aattggtaat
    12541 aataatgtag cggatcttct ctaagtggaa tattataacc aaattcaaat gtctgctccg
    12601 gcttagaaac gtacgttcgg ctttcaatac tatgacctcg gctatttaac caaggtttct
    12661 tccagttaag ctgtaacctt gggccaactt cagtttcgta gcctatccca atttccactt
    12721 cattgcgttt tttaggctga aataacacat ttaaatccac taatttatcc tgttcattta
    12781 aatgtgactc aaccatcact gatgaaaacc aattactgga aaggtaatct tgggttaaaa
    12841 tcgaaagatc gttagctaaa tatggctcac cggaatgaat tttaagaata ttttgcaaat
    12901 attcttcttt gatttggcta tcaacaaacc ggatttgtcc ataatggtat cgttttccgc
    12961 tatcatagcc taaacgccaa tccgctttat gatcggtcgg ataaacttcc aaacggtgat
    13021 aaagccaatg accgtcaaaa taccctttac taaaagcggt actttcaata tcacctttaa
    13081 aattatcata ggttttatgg tttaaacgac taccttgttt tggggcttta ctgactagat
    13141 gagcgaaatc ttcgtccgtt tttgcatcgc cttgcaaaac aatatcggtt tcatcaattt
    13201 ttaccgtctc tttatctagc tcaacattta atactaagag cggtttcttt ccctcttgag
    13261 gtagctgcac aaattggtat cggctattat aatagcccaa ggctctcaga gctttatcta
    13321 ctgtggtttg caccaaatat tgataacgct ctgaaccatc tgcatattca ttggcaattt
    13381 gatctaaata tagctccaca tttttcttgg catctttacc ctgaatgcct ttgacttcta
    13441 aagtgactaa tggctctatt tctggctcat catcactatc ttccgctaat ttttcttgca
    13501 gattttcaac tcgctcacga tctacgtcag acagcctttg ctcttgattt gcttgtgcca
    13561 ttgaagcaaa agccactaaa cagcagaatg ttaaaaaatg tagttttgta ttcattagta
    13621 acctttttat tcttttggaa tgccacgcaa aagcggaata ctgtcataag gcggaacaga
    13681 acttaacgct ggctcttgct caaagagcat aatgaatggt ttgtcaggca ctgttttttc
    13741 attacgccac aagtttccaa cactcaccaa ttcaatatct tgaggtagtt gtgctaaatt
    13801 ttgcttcagt acactaatcg tattcttgcg agggtgtcct atcaccaccg ctaccccgtt
    13861 ttttcgtgcg tgattaattg catgtgcaaa ctgtttttgt acatcagcaa gcagatcgct
    13921 atcatctaaa aaaatgtctc tctccagcgt attaatacca aattgacgag ccgttttagc
    13981 cgccacacta ctgccaatag ttttactgtc taaaaagaaa agcgtatttt cttttaacac
    14041 tttcaacaaa tgttgcattg tagcagagtc tgaagttgct ccactgccca tatggttatt
    14101 taaaccaata gcatatggta cttgaccacg agaagtatga ataagtttcc gaattttctc
    14161 ttcgttatca ccaatatgaa tacccccctc ttcaattggc tgtttcgatt taggttccat
    14221 tggcaaatga atcaaaatat cccgtttttg gttataagcg tcctttgccc gttctgttgc
    14281 atagggtgca acaggaataa tcgccacgct taccgccttg ggtaaggcta agatttctcg
    14341 atcttctttt attcgatagc ccacatcatc aattacaatc gccatttgag ctgcttgtac
    14401 aagcggtgta aaaagcacaa acatttgcaa aaaaatgtta aaattcaacc gcttgttaat
    14461 ttgtttaaac atctatttca ccaaatttag aggattaatc ggcgtgcctt tacgggtaac
    14521 accaaaatag agtgcagaac ggctttgtcc cccactgtta ccaaccttcg caataacctg
    14581 tccgccttgc actcggctac ccttgctgac tgaaatagat tggttatagc cataaaggga
    14641 aatatcacca ttgccgtggt caatcgcaac catattgcca taccctgcaa gccattgagc
    14701 cattatgact cgcccgctcg ccattgctct aaccgaagta ccggcagaag caccaatcac
    14761 tacaccgtgc caattattac caaaaggagt gataatattg ccagacaccg gcatcgtata
    14821 tcgaccagcc ttgatcggtg ttctctcaac attctcagtt gttttggact gaccggattt
    14881 tgcctgtttt tcccgctgtt gttcacgttt ttctgcttgc tgagcctctc tttgcgcttg
    14941 ttctaattgt tgttttagtg cctgttcatt gctgcgtaaa ttctctaatc ggctttgatc
    15001 ctgctcaagc gttttatcga ttaaacgtaa ggtactttca cgctggcttt gtactttctt
    15061 taaatctttc tcttgtttct tttgttcatt aagttgcgtt tgatgatctt tttgctggcc
    15121 tttcaattca tcacgtctgg ctttaagatc agcttgggtt ttacgaattt caacgatcgc
    15181 atcaatgcga atattattca tatgctgata ataagcggtc attctttccg cattttttgc
    15241 ctcttcagac attaaacgct ctaagaccga agggttcacc ccagaacggt aggcagagtc
    15301 caactgctct tttaattttt ctttctgctg tttttccaac ttttctaaac gggcaatttc
    15361 agtctcagtc gctttaatgg tctggcgaac ttccgttaaa gacatttcgg ttttttgtaa
    15421 tttatccaac accttcccca tttctacttc ttggtttttt agggtagatt gcaacgcatt
    15481 acgtttttgc ttttgttcat taatttttga ggtttgctgt tggatttttt gctgaatctg
    15541 attaagatta tttgcaaaag aaaaaggggt agaaaagctt attaccccac tgaaaatagc
    15601 agtccaacag taagaattta ttcgtttcac cagcatacct ttgtttcttc aaaatattat
    15661 taaggttata ttctaatcgg ttatttgctt aagatcagct ttttagtgaa a
//
LOCUS       DANMBQ010000051        15500 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.051, whole genome shotgun sequence.
ACCESSION   DANMBQ010000051 DANMBQ010000000
VERSION     DANMBQ010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15500
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.051"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            24..914
                     /locus_tag="PXE92_001321"
     CDS             24..914
                     /locus_tag="PXE92_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5760573.1"
                     /translation="MDKLNAISLFCKVIETQSFTQAAQQAQISLPMASKLVAQLEEHL
                     NVRLLQRTTRKITPTEAGLLYYQQCLPILNELKEADASVSNINSTLQGKITMSVPMDF
                     GSRFIAPYLGKFMEDYPNLALHIEFSDRRVDVIAEGFDLVLRIGSLADSSIVAKKIAD
                     SHLVLVASPDYLARFGEPKGLEALVERDCLLYEYHPQWQFSQQGQKMQIKPQGKIYSN
                     NGYALVQMAKAGLGIINIPKFLIKHELKNGELIPIMPFLTQEPLQISLLYPNRRYLSP
                     KVRILIDFFTQLMQEQKEYI"
     gene            complement(964..1224)
                     /locus_tag="PXE92_001322"
     CDS             complement(964..1224)
                     /locus_tag="PXE92_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HDL5760574.1"
                     /translation="MGWIAAIIVGAIIGWIASAVMKSEGGLCKNIIIGILGSSLGRWV
                     FGDVLGIGSAYSAGDFNIVGIFFGVLGAALLIFILRKLSIIN"
     gene            complement(1304..2263)
                     /locus_tag="PXE92_001323"
     CDS             complement(1304..2263)
                     /locus_tag="PXE92_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5760575.1"
                     /translation="MKFHKTLLVTLLSSLSVAALAQDKIQNVAITAIVEHPALDSIRK
                     GVIEELAREGFVDGKNIKIDYQSAQGSTATAAQIARKFVGDKADIIIPITTPSAQPVV
                     AATRSIPIVFSGVTDPVAAKLVKSWEPSGTNVTGISDHKAMAPQVKLIQTLVPDLKAV
                     GYVYSAGEVNSAIVLEELKQEAQKQGFTIVPVAVQRSADIGTAARSLNGKVQAIYISE
                     DNAVVSAYEALHKAALEAKIPVIAADRDTVQRGAVAAYAVNQYDIGVATGKVAARVLK
                     GEKAGTIPIQEVSKLELSINTKTAKELGITIPEVLIKEAKQTF"
     gene            complement(2460..2867)
                     /locus_tag="PXE92_001324"
     CDS             complement(2460..2867)
                     /locus_tag="PXE92_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HDL5760576.1"
                     /translation="MKPLRPYLYNAYYNWIIDSDNTPYLLVNAEFPDVDVPVEFVKEG
                     KIILNISPRSIGQYIVADEYISFSARFQGMLRDIYIPFGAMVAIYAQETGDGIMFQEE
                     AYYTEEAYQARVRAVEQPKKIKAKKTSTLKLVK"
     gene            complement(2867..3511)
                     /gene="sspA"
                     /locus_tag="PXE92_001325"
     CDS             complement(2867..3511)
                     /gene="sspA"
                     /locus_tag="PXE92_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HDL5760577.1"
                     /translation="MTSSINKRSVMTLFSDKNDIYSHQVRIVLAEKGVPYEIENVMLG
                     SISEDLLELNPYGNIPTLVDRELVLFNPRIIMEYLDERFPHPPLMPVYPVSRGQCRLN
                     MYRIEQDWYSQIDIVNKDPESAEGKKALAQLKEDVLALAPIFAAKPYFMSDDFSLVDC
                     YIAPLLWRMQILGVKFSGATAKPINAYMTRVFQRDSFIQSVGGEAPKHLMDDKD"
     gene            3685..4182
                     /gene="purE"
                     /locus_tag="PXE92_001326"
     CDS             3685..4182
                     /gene="purE"
                     /locus_tag="PXE92_001326"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDL5760578.1"
                     /translation="MPNKAEIAIVMGSKSDWATMSEATQILDQFGLSYHVEVVSAHRT
                     PDKLFSFAETAETNGYKVIIAGAGGAAHLPGMIAAKTIVPVLGVPVKSSMLSGVDSLY
                     SIVQMPKGIPVGTLAIGPAGAANAGLLAAQILAAFNPDIAEKLRIFRQTQTQMVLDNP
                     DPRVE"
     gene            4197..5162
                     /locus_tag="PXE92_001327"
     CDS             4197..5162
                     /locus_tag="PXE92_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HDL5760579.1"
                     /translation="MSKKLLILHTGGTISMKEGEDGKVSPSNENPLLAALERLNHPAK
                     LAQESLFNIPSPHINIEHWQQLKMRIEKAVNEENVDGVVITHGTDTLEETSYFLDLAL
                     SVNIPVVITGAMRSSNELGADGLINLQSAILVALNEESRDKGVLVVMNDEIHNAKFVT
                     KTHTTNVATFQTPTFGPCGLVTKESVIFFQKLTTYERYPIQQVTKANVQLLKAYAGMD
                     SFLLEQLAKSKCDGVVIEALGAGNLPPSCLAGIEALVNANIPIVIVSRAFNGITQDVY
                     DYVGGGKQLKQKGIIFTKGLSGQKARIKLMVLLSQTLDKPLSDYF"
     gene            5181..6269
                     /gene="purK"
                     /locus_tag="PXE92_001328"
     CDS             5181..6269
                     /gene="purK"
                     /locus_tag="PXE92_001328"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HDL5760580.1"
                     /translation="MQKSAIYPPVYVLGNGQLGRMLRYAGAPLDIEVKPLAFDAPVFD
                     IEPNSIITAEIERWADTPLTQLLGNHPNFVNLNVFGKLADRFTQKSLLDELHLATSKW
                     QLLENAEHWQDIFQHIGEKVVVKRRTGGYDGRGQWIVTQDSIHQITPELFGEVIAEKF
                     IPFEGEISIVGARFRDGSTRFYPISHNLQQNGILRYSVSDVNLPNQALYQQQAEQMLA
                     TVMQKLEYVGVMAMECFVVGDKLLINELAPRVHNSGHWTQLGCAISQFELHLRALLDL
                     PTPALDQIAPSVMVNLIGIEHNKQWLSLPFSQLHWYGKEVRAGRKVGHINLTHTDKNG
                     LIELLEQLRPSLTEDFHSGLDWAINKLK"
     gene            complement(6490..6900)
                     /locus_tag="PXE92_001329"
     CDS             complement(6490..6900)
                     /locus_tag="PXE92_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760581.1"
                     /translation="MISRSLFSKLILFAKIVIFSQLVFMVVIWIAHHIMREYSNPFER
                     FGTLFNNVFLTFIIPMMVSSAVIVYKGYTQKNEDKVFWIYMGFFLIWILGFIYFEPAV
                     YDKSLKISGAGFGAMLSIIICSKLLPKETNKEQL"
     gene            complement(6903..8921)
                     /gene="uvrB"
                     /locus_tag="PXE92_001330"
     CDS             complement(6903..8921)
                     /gene="uvrB"
                     /locus_tag="PXE92_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HDL5760582.1"
                     /translation="MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVT
                     GSGKTFTIANVIAKLNRPAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPE
                     AYVPASDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
                     MLHLQVGAMIGQREILSRLAELQYTRNDQAFQRSTFRVRGDVIDIYPAESDEVALRVE
                     LFDDEIENLSLFDPLTGHSLGKVPRYTIYPKTHYVTPRERILEAIEQIKVELADRRTY
                     FIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRKEGEAPPTLFDYMPA
                     DGILVIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLSPQT
                     IYVSATPGAYELEKNPDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIHKRVAVDER
                     VLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVERVEIIHDLRMGMFDVLVGINLL
                     REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRITNSMQKA
                     ITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSDKPKRGKQAVKKAENSATDY
                     KPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQHLKAYLLEV"
     gene            complement(9160..9396)
                     /locus_tag="PXE92_001331"
     CDS             complement(9160..9396)
                     /locus_tag="PXE92_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL5760583.1"
                     /translation="MSRTTSVTLAEPLSQFVNQMVESGRYGSTNEVISAALKILEAQE
                     QQLIQLRALIDEGLESGVSEETVQSIISKAKRNV"
     gene            9559..10404
                     /locus_tag="PXE92_001332"
     CDS             9559..10404
                     /locus_tag="PXE92_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EfeM/EfeO family lipoprotein"
                     /protein_id="HDL5760584.1"
                     /translation="MFLLKGNFYAFNQTCFCTFALSGFFVATQAAALDLTKETEAYKQ
                     FVVEQIDQLVTDTEKFVGYLNKGDVQKAKKIYPLARMYFERSEPIAESFGDLDPRIDA
                     RLADLAEEGKTEKDWSGFHKIEKVLWQKNTTKGTKATAEQLLKDVKELRAKIPTAEVT
                     PEPMITGAVDLLNEVSTTKVTGEEEIFSKTDLYDFKANIEGAEKIYEIFKTQLEQIDA
                     KLSTEIGSRFAAVNALLAKHNKSKTGYDYVPYNKLSKADIKALAEAVNQLGEPLAQLG
                     VLLNK"
     gene            10415..11611
                     /gene="efeB"
                     /locus_tag="PXE92_001333"
     CDS             10415..11611
                     /gene="efeB"
                     /locus_tag="PXE92_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HDL5760585.1"
                     /translation="MMAETTSRRDFLKHTALVGAGLLSAPAFALESRQISEKSQNQYD
                     FYGKHQAGIVSPAQKHIYFLVLDLDTTDIAKVKTLFQNWTEYSRNLTLGKNVKPYSAN
                     AYVPPADTGEADSLSAQNLTLTFGVSANFFTKLGIEKHKPKELNDLPHFPRDQLQAEY
                     TGGDICIQACADDPQVAFHAVRNLVRVARGEIKMKWSQMGFNSFANQDTPRNLFGFKD
                     GTANAESLKDQENTVWVQQEGWLKGGSYLAVRRVKMFLETWDRTHLQSQEETFGRHRD
                     SGAGIGHQHEFDKLDLAKKDEKGNAVIPEVSHAHLANKTGLKILRRSFSYSSGIDDKG
                     QFDSGLLFVSFQQSPEQFIKIQNALGNVDKMNEYITHIGSGLFACFAGVKDENDYLGK
                     ALFDLI"
     gene            11622..12241
                     /locus_tag="PXE92_001334"
                     /pseudo
     CDS             11622..12241
                     /locus_tag="PXE92_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596976.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+/Pb2+ permease"
     gene            complement(12277..13095)
                     /locus_tag="PXE92_001335"
     CDS             complement(12277..13095)
                     /locus_tag="PXE92_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HDL5760586.1"
                     /translation="MKYDLHAHSTASDGVLSPTELVQRAVEQGVTMLALTDHDTISGI
                     QEAKNFAQNQPLELISGVEISILWQEKSIHLAALNIDENNEELVKFLDNQAQLREERA
                     VEIGEKLAKVGIANAYEGAKALATGEVTRAHYGRFLYEQGYVRNIEHAFKRYLGMGKP
                     AYVKPRWSSLEDAVNVTHTSGGVISIAHPLRYKMTARWIRRLIADFKQAGGDGIEVSG
                     CGQTPDQRQLLARWAKEFDLYGSVGSDFHYPTGWIELGKSLELPQECKPIWTLF"
     gene            complement(13107..13706)
                     /locus_tag="PXE92_001336"
     CDS             complement(13107..13706)
                     /locus_tag="PXE92_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA glycosylase"
                     /protein_id="HDL5760587.1"
                     /translation="MTMDNLPLEQHPFDPILPEQATVVMVGTFPPTSEKRCMEFHYPN
                     FQNDMWRIMGNIFYADPNYFRVGEEKRFDPIRIEAFLREKGVALCSSAKTAIRLKGNA
                     SDKDLKIVDPIDMDELLLKLPKLKWLFTTGGLATDTLLGLLPEKHKAPKTNEWVVYPY
                     SATRELYLYRLPSTSRAYPLSLANKTEAYRQFFRTAGLI"
     gene            complement(13703..15250)
                     /gene="sbcB"
                     /locus_tag="PXE92_001337"
     CDS             complement(13703..15250)
                     /gene="sbcB"
                     /locus_tag="PXE92_001337"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HDL5760588.1"
                     /translation="MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVM
                     FFCKQTPDYLPSPEAVMVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIR
                     YDDEMTRYTFFRNFYDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSF
                     KLENLTKANGIAHENAHDAMSDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLID
                     TGEMTPLVHVSGMLGNYRGNTAWVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLR
                     QRLYTKRDELAENELPVPLKLVHINKCPILAPAKTLLPENAERLGIDRALCLENLKTL
                     KAQKSLIREKVIEIFNEERTFEPSTNVETTLYDGFFSPADKNNMAILRTLPPEDLANH
                     GLKFEDPRVEALLFHYRARHYPQTLSRAEQIKWQKHCNQQIEAKAAQFAQSIDDLFQQ
                     HHDNPEKVKLLENLTAYAEQISQQQAVIYRQNVAKDEKLLSELNRVAEQPLDKTEKLK
                     MLKELIK"
BASE COUNT         4634 a         3355 c         3069 g         4442 t
ORIGIN      
        1 ttacaatata aagaagagag aaaatggata aactaaacgc aatcagttta ttttgtaaag
       61 taattgaaac ccaaagtttc actcaagcag cacaacaagc tcaaatttcg ttacccatgg
      121 caagtaaatt ggtggctcag ttagaagaac atctcaatgt gcgtttacta caacgaacca
      181 ctcgaaaaat tacgccaact gaggcagggt tgctctacta tcagcaatgc ttgcctattt
      241 taaatgaact aaaagaggcc gatgccagcg taagtaatat taactcaacg ctacaaggga
      301 aaataacaat gtctgtacca atggattttg gctctcgctt cattgcccct taccttggga
      361 aatttatgga agattaccct aatttagccc ttcatattga atttagtgac cgtcgggtag
      421 atgtgattgc agaaggcttt gatttggtgc tgcgtattgg tagccttgca gatagttcca
      481 ttgtagcgaa aaaaattgca gattcccatt tggttttagt tgcttctcca gattatttag
      541 ctcgatttgg cgaacctaaa ggcttagaag cattagtgga acgagactgc ctactctatg
      601 aataccatcc tcaatggcaa ttttctcaac aaggacaaaa aatgcaaatt aaaccacaag
      661 gtaaaattta cagtaacaat ggttatgcgt tagtacaaat ggcaaaagct ggtttgggca
      721 tcattaacat tccaaagttt ttaataaaac acgagctaaa aaacggagag ttgattccta
      781 ttatgccttt tttgacacag gaacctttac aaatcagctt actctatcca aaccgtcgtt
      841 atctctctcc taaagtgcga atcctaattg attttttcac acaactgatg caagagcaaa
      901 aagagtatat ttaacaaaaa agaagcagtt ataaaacaac tgcttccttt ctgaaatacg
      961 aaattagtta attatgctta attttctcaa aatgaaaatc aaaagagctg cccctaatac
     1021 accaaaaaag ataccgacta tattaaagtc tccggcacta taagcggaac caatacctaa
     1081 tacatcacca aatacccagc gtccaagtga cgaacccaaa ataccaataa taatattttt
     1141 gcaaagtccg ccttcacttt tcattacagc cgaagctatc caaccaatta tagcgccaac
     1201 aataattgca gcaatccatc ccataatatt ctccttagct gagttgaaat gaatttttac
     1261 tctacaagat tatgacaaat aaaacaaatt tttatttttt acactaaaaa gtttgtttag
     1321 cttctttgat taatacctct ggtatagtaa tgcccaattc ttttgccgtt ttagtattaa
     1381 ttgaaagctc taatttgctg acttcttgga ttggaattgt acctgctttt tcccctttta
     1441 atacacgagc agcaacttta ccggttgcca caccaatatc atattgatta accgcataag
     1501 ctgccactgc accacgttgt actgtatcac ggtcagcagc aatcaccgga atttttgctt
     1561 ctaaagccgc tttatgtaag gcttcataag ccgaaacaac tgcattatct tcagaaatat
     1621 aaatagcctg cacttttccg tttaggctgc gagcagcagt gccaatatcg gcactgcgtt
     1681 gaacagcaac cggcactata gtaaagccct gtttttgagc ctcttgtttt aactcttcta
     1741 acacaatcgc agaattaact tcacctgcac tatacacata accaacagct ttcaaatccg
     1801 gtactaatgt ttgaattaat ttcacttgtg gagccatcgc tttgtggtct gaaatccccg
     1861 tcacgttagt gccacttggc tcccacgatt ttactaattt tgcagcaacc gggtctgtca
     1921 cgcctgaaaa cacaattggg atagaacgtg ttgcagcaac aacaggttgt gccgaaggtg
     1981 tggtgatcgg gataataata tctgctttat ccccaacaaa tttacgcgca atttgtgctg
     2041 ctgttgcagt actaccctgt gcagactgat agtcgatttt aatgttttta ccatcaacaa
     2101 acccttctcg ggctaattct tcaatcacac ctttacgaat tgaatctaat gcagggtgtt
     2161 ccacaatcgc tgtaattgct acattttgaa ttttatcttg agctaatgcc gctacagaaa
     2221 gtgaacttaa caaagtcact aataaggttt tatggaattt cattttctct ccttaagatc
     2281 attactgtac tatcacaaca gtacaaacac aaaacaaaga taagcaattt ttagtcggag
     2341 tgcaagtgga atttgattat ttccgtcaca aaacaaacaa gcggttaaat tttgactgat
     2401 atttgcaaat aatcagaaaa atttaaccgc ttgtaatgtg ttttgatgaa atagatctct
     2461 tatttcacca actttaaggt agatgttttc ttcgccttga tttttttagg ctgctctact
     2521 gctctaactc gagcttgata agcctcttca gtgtagtagg cttcttcttg gaacataata
     2581 ccatcaccgg tttcttgcgc ataaatcgcc accattgccc caaaaggaat ataaatatct
     2641 cttaacattc cctgaaaacg agcgctaaag ctaatgtatt catcagccac aatatactgc
     2701 ccgatggaac gaggcgaaat atttaaaata atcttccctt ctttgacaaa ctctaccggc
     2761 acatctacgt ctggaaattc tgcattcact aataagtaag gcgtgttatc gctatcaata
     2821 atccagttat agtaggcatt ataaagataa ggtcttaatg gtttcattag tctttatcgt
     2881 ccattaaatg ttttggcgct tcgccgccaa cagactggat aaaactatca cgttggaata
     2941 cacgggtcat atacgcatta attggttttg ccgttgcacc gctgaattta acgcctaaga
     3001 tttgcatacg ccataataac ggtgcaatat agcaatcaac caagctgaaa tcatcgctca
     3061 taaaataagg tttagcggca aaaataggcg ctaatgccaa tacatcttct ttaagctgtg
     3121 ctaacgcttt cttgccttcc gctgattcag gatctttatt cacaatatca atttgcgaat
     3181 accaatcttg ttcaatacga tacatattta aacggcactg accacgagaa acagggtaaa
     3241 ccggcattaa tggtgggtga gggaaacgct catctaaata ttccataata atacgagggt
     3301 taaacagcac taattcacga tcaaccaatg taggaatatt accgtaagga ttcaattcta
     3361 ataaatcttc agaaatactg cctagcataa cgttctctat ttcataaggc accccttttt
     3421 ctgctaacac aatacgcact tggtggctgt aaatatcatt tttatccgaa aaaagagtca
     3481 ttaccgaacg tttgtttata ctactcgtca tttatatctc cgatgattaa atttataaaa
     3541 aataaaatgg ttgtcgatta tatcatattt taaccagcag ataacagccc taaaaattgc
     3601 ttttcacttc ttaaatagct acgcaaacgt ttgctttgta tgctatgatt acactgtttt
     3661 acattagtat cataaggatt taaaatgcca aataaagctg aaattgcgat cgtaatggga
     3721 tctaagagtg attgggctac aatgtctgaa gcaacccaaa tattagacca gttcggtttg
     3781 agctatcacg ttgaagtcgt ctcagcacac cgcacaccgg acaaactctt ttcttttgct
     3841 gaaactgcag agactaacgg ctataaagtg attattgccg gagccggcgg tgcagctcac
     3901 ttgcccggaa tgatcgctgc taaaaccatt gtgccggtgt taggtgtgcc ggtaaaaagc
     3961 tcaatgttaa gtggtgtaga tagcctctat tcgattgtgc aaatgccgaa aggtattccg
     4021 gtcggtacgc tcgcaatcgg gccggcaggt gcagcaaatg caggcttatt agccgctcaa
     4081 attttagcag cctttaaccc tgatattgca gagaaactgc gtattttccg tcaaacccaa
     4141 actcagatgg tattagataa tcctgatcct cgtgttgaat aactattgta taaaagatgt
     4201 ctaaaaaatt attaatcctc cacactggtg gtactatttc aatgaaagaa ggggaagacg
     4261 gtaaggtctc cccttccaat gaaaatcctc tcttggctgc cttagaacgt ttaaaccacc
     4321 cagcaaaatt ggcgcaagaa tcgttattta atattccctc tccgcatatc aatatcgagc
     4381 attggcaaca gttaaaaatg cggattgaaa aggcagtgaa tgaggagaat gtcgatggcg
     4441 tagtaatcac ccacggcaca gataccttgg aagaaacctc ctattttctg gatttagccc
     4501 tcagcgtaaa tataccggta gtaattaccg gagcaatgcg ttccagtaac gaactgggtg
     4561 ctgatggctt aatcaatcta caaagtgcga ttttagtggc gttaaatgaa gaaagccgag
     4621 ataaaggcgt gttagtggtg atgaatgatg aaatccacaa tgctaaattt gtgaccaaaa
     4681 cccacaccac taatgtggcg actttccaaa ccccaacctt tgggccttgt ggcttagtaa
     4741 cgaaagaatc tgtcattttt ttccaaaaat tgaccactta cgaacgttat ccaattcaac
     4801 aagtaactaa agctaacgtg caactactga aagcatacgc cggaatggat agttttctgc
     4861 tggaacaatt agcgaaaagc aaatgcgatg gtgttgtgat tgaggcattg ggtgcaggta
     4921 atttaccccc tagttgtctg gctggtattg aggctttagt gaatgccaat attccaattg
     4981 taattgtttc tcgggcattc aatggtatta cccaagatgt ctatgattat gtaggcggtg
     5041 gaaaacagtt aaagcaaaaa ggcattattt ttaccaaagg cttaagtggg caaaaagctc
     5101 gcattaaact tatggtctta ctcagccaaa ccttagacaa accactatca gactatttct
     5161 aacccattga gaataccacg atgcaaaaaa gtgcaatcta cccacctgtg tatgtattag
     5221 gcaacggcca gctcgggaga atgctacgct acgccggagc accacttgat attgaagtca
     5281 aaccgctggc tttcgatgcc cctgtgtttg atattgagcc aaacagcatt attaccgcag
     5341 aaatcgaacg ttgggcagat acgcctttaa cgcaattact cggtaaccac ccgaattttg
     5401 tgaacctgaa tgtttttggg aagttagccg atcgttttac gcaaaaatca ctacttgatg
     5461 aactccatct tgcgacttca aaatggcaac tgctagaaaa tgccgaacat tggcaagata
     5521 tttttcagca tattggcgaa aaagtagtgg ttaaacgccg aaccggagga tatgacggac
     5581 gtgggcaatg gattgtaacg caagactcga ttcatcaaat tacacctgaa ttatttggcg
     5641 aagtgattgc cgaaaaattt atcccgtttg agggggaaat ttccattgtt ggggcgagat
     5701 tccgtgacgg ctcaacccgt ttctacccta tttctcacaa tttacaacaa aacggcattc
     5761 tacgttactc cgtctccgat gtgaatttac cgaaccaagc cctctaccag cagcaagccg
     5821 aacagatgct cgctacggta atgcaaaaat tagagtatgt cggcgtaatg gcaatggaat
     5881 gctttgttgt gggcgacaag ctactcatca acgagcttgc ccctcgagtg cataacagcg
     5941 gacactggac acaactcggc tgtgccatta gccaatttga gttacattta cgggcattat
     6001 tagatctacc tacgccagca ctcgaccaaa ttgccccaag cgtgatggtt aatttaatag
     6061 gcattgaaca taacaagcag tggctaagcc tcccatttag ccaactacat tggtatggca
     6121 aagaagtccg agctggtaga aaagttgggc atatcaacct cactcacacc gataaaaacg
     6181 gcttaattga actactggaa caactcagac cgagcctaac ggaagatttc cattcgggat
     6241 tagattgggc aatcaataag ctcaagtaag cggtcggatt ttgtaacttt tttgcaaatc
     6301 tgtttacccg atggtgcgag cttcctcgct cgtaccaaac aagcggtcga cttagtgcta
     6361 aaatttgcaa aataattcaa cataatggct acttccggtc atcatcttga tctgaaaacc
     6421 cctcagggtg gatatggcta tcaaaaagca ttttcttcct ccgagaaaac agatttcttc
     6481 acaagaatct tagagctgct ctttatttgt ttccttaggc aataacttcg agcaaatgat
     6541 aatagagagc atagccccaa atcctgcacc tgaaatcttc agtgatttat cataaactgc
     6601 cggctcaaaa taaataaatc ccaaaatcca aattaaaaag aaccccatat aaatccaaaa
     6661 cactttatct tcatttttct gggtataacc tttataaaca ataaccgcac tacttaccat
     6721 catcggaata ataaaagtca aaaacacatt attgaacagg gtaccaaatc gttcaaacgg
     6781 attactgtac tcccgcataa tatggtgggc aatccagata accaccataa aaacaagttg
     6841 agagaaaata acaattttgg caaataagat taattttgaa aataatgaac gagaaatcat
     6901 atttaaacct ccaacaaata cgcctttaaa tgctgcaact tatcccttac cgcagccgct
     6961 ttttcaaatt ccagatcttt cgcaaaatca cgcatttgtt gttccagcgt tttaagctct
     7021 ttttccagtt ctttacggga tttcggcttg tagtcggttg cagaattttc ggcttttttg
     7081 accgcttgtt tgccccgttt tggcttgtcg gattgtccga tgtcgagcaa ttcacccact
     7141 tttttgttca acgcttgtgg cgtgatgccg tgttcttcgt tgtatttcat ctgcttttca
     7201 cggcggcgtt cggtctcagt aattgctttt tgcattgagt tggtaatgcg gtcgccgtat
     7261 aaaatcgctt ttccgttgag gtttcgggcg gcacgtccga tggtctgaat taacgagcgt
     7321 tcggaacgta aaaatccctc tttatccgca tcaagaatgg caaccagcga cacttcgggc
     7381 atatctaagc cctcacgcaa taagttgatc cccaccagca catcaaacat tcccattcgt
     7441 aaatcgtgga taatttcgac ccgttccacc gtgtcaatgt cgctatgtag ataacgaact
     7501 cgtacgccat gttcgtccaa ataatcggtg agatcttccg ccattttttt ggtgagtgtt
     7561 gtcaccagca cccgttcgtc caccgccact cgtttgtgaa tttcagacag taaatcgtcc
     7621 acctgcgtag caacggggcg aacttcgata atcggatcga gcaagccggt tggacgaact
     7681 acttgatcca ccacatcggg atttttctcc aattcatacg cccccggtgt ggcagaaacg
     7741 taaatcgtct gtggtgaaag acgttcaaac tcttcaaatc tcaacgggcg gttatccagt
     7801 gcagacggca gacggaaacc gtattgcacc aatgtttctt ttctcgctcg gtcgcctcga
     7861 tacattccgc caatttgtgg cacagtaacg tggctttcat caatcaccaa aataccgtcc
     7921 gccggcatat aatcaaacag ggtcggaggg gcttcgccct cttttctgcc cgagagatag
     7981 cgtgagtagt tttcaatgcc cgaacagtag cccagctcgt tcatcatctc aatatcaaac
     8041 tgcgtacgtt gggcgatccg ctgctcttcc agcaatttat tctctttgat gaaataggtg
     8101 cgacggtcgg caagctcgac cttaatttgc tcgattgcct ccaaaatccg ttcccgaggg
     8161 gtcacatagt gagttttcgg gtaaatggta tagcgaggca ccttgcccaa gctatgccct
     8221 gtaagcggat caaacagcga cagattttcg atttcatcgt caaacagctc tacccttaac
     8281 gctacttcat cgctttcggc agggtaaata tcaatcacat cgccccgcac tcggaaagtc
     8341 gaacgttgga acgcctgatc gttgcgagta tattgcaatt cggcaaggcg agagagaatt
     8401 tcacgctgcc caatcatcgc ccccacttgc aaatgcaaca tcatctgcat ataagcgtcc
     8461 acatcaccca agccgtaaat ggcagaaacg gacgccacta caatcgtatc tcggcgttcc
     8521 aaaaaggatt tggttgcgga aagtcgcatt tgctcgatct gctcattgat agaggcatct
     8581 ttctcgataa aggtatcgct tgccggcaca taggcttcgg gctggtagta atcatagtaa
     8641 gagacgaaat actccaccgc attttccgga aagaacgctt tcatctcggc ataaagctgg
     8701 gcggcaaggg ttttattcgg ggcaagcacc atcgccgggc gattgagctt ggcaatcaca
     8761 ttagcaatgg taaaggtttt ccccgagccg gttacgccaa gtaaggtttg atgtgccaag
     8821 ccgtcattta agccttcggt caatttggca atcgcacttg gttggtcgcc ggagggcttg
     8881 aaaggagaat ggaggataaa gggtttgcct tgcttgctca tagaaaatcc tgtcttaaaa
     8941 aatcggttta ttttagcaca agcaagcggt cgtttttatc gggatttttg caaatttatt
     9001 gtaactgctt atattgatcc attcttggat ctaacaccct aacaataaag ataccttttg
     9061 ggattggttt ataataaata gaatgtgagc ggtggtaatg acagcgtaac aaagggcgaa
     9121 taaagtaacg ctaaatctcg ctctgcccta acagaaagtt tatacattac gttttgcctt
     9181 gctgataata gattgaacgg tttcctcaga aacaccgctt tctaagcctt catcaattaa
     9241 ggctcttagc tgaattagtt gctgttcttg tgcttccaat atttttaatg cggcactgat
     9301 gacctcgttg gtcgaaccat aacgcccact ttcaaccatt tggttcacaa attggcttaa
     9361 tggctcagct aaagttacgc tggttgttct actcattact attcctatct tattgattat
     9421 tgagcagatt gtaatggctc taatttagat aagcaagcgg tctattttta gcaataattt
     9481 gcaaaacaaa atgtgattta catcacaaaa tcagcattat tttttgcgaa taattcgcaa
     9541 taaggatatt atgtcgcaat atttttatta aaaggaaatt tctatgcgtt taaccaaact
     9601 tgcttttgca cttttgcact ttctggcttt tttgtggcta ctcaagcggc agctttagac
     9661 ttaactaagg aaaccgaggc ttataaacaa tttgtggtag aacagattga ccaactggtt
     9721 accgatacgg aaaaatttgt cggctactta aacaaaggcg atgtgcaaaa agcgaagaaa
     9781 atttacccgc ttgcaagaat gtattttgaa cgttctgaac cgattgcaga aagttttggc
     9841 gatttagacc ctcgtattga tgcccgtctg gcagatttag ccgaagaagg taaaaccgag
     9901 aaagattggt caggtttcca taaaatcgag aaagtattgt ggcagaaaaa caccactaaa
     9961 ggcacaaaag caacggcaga acaattatta aaagatgtaa aagagctgcg tgcgaaaatt
    10021 cccactgcag aagttacccc tgagccgatg attaccggtg cggtagattt attaaacgaa
    10081 gtttctacta ctaaagtaac cggtgaagaa gaaattttct ctaaaaccga cctttacgat
    10141 tttaaagcca atattgaagg tgcagaaaaa atctatgaga tttttaaaac gcaattagag
    10201 caaattgatg ccaaactctc aacagaaatc ggctctcgtt ttgcggctgt caatgcgctg
    10261 ttagcaaaac acaataaatc taaaaccggt tatgattatg tgccttataa caaactgtca
    10321 aaagcggata ttaaagcgtt agcagaggct gtaaaccaat taggcgagcc gttagctcaa
    10381 cttggcgtac ttttaaataa atagtggagc aaaaatgatg gcagaaacca cttctcgccg
    10441 tgatttttta aaacataccg cattagtagg agcaggctta ttgtctgctc ctgctttcgc
    10501 tttggaatca cgacaaatat ctgaaaaatc tcaaaatcaa tacgactttt acggcaaaca
    10561 tcaagctggt attgttagcc ctgcacaaaa acatatctac tttttagtgc tggatttaga
    10621 caccactgac attgccaaag taaaaacatt gtttcaaaac tggacggaat atagccgtaa
    10681 cctcacgctt ggcaaaaatg tgaaacctta tagtgctaat gcttatgttc caccggcgga
    10741 taccggtgag gcagatagcc tttcggcaca gaatctcact cttacttttg gcgtcagtgc
    10801 caatttcttt acaaagctcg gcattgaaaa acataagccg aaagaactga atgatttacc
    10861 gcatttccct cgtgatcaac tacaagcaga atacaccggt ggcgatattt gcattcaagc
    10921 ctgtgcagac gatccgcaag tggctttcca cgctgtgcgt aatttggtgc gtgttgcccg
    10981 tggtgaaatc aaaatgaaat ggtcgcaaat ggggtttaac tcctttgcca atcaagacac
    11041 acctcgtaac ttattcggtt ttaaagacgg cactgccaac gcagaaagtt taaaagatca
    11101 ggaaaatacg gtatgggtgc aacaagaggg ctggctcaaa ggcggttctt atttagccgt
    11161 tcgccgtgtt aaaatgttct tggaaacttg ggatcgcacc catctccaat cccaagaaga
    11221 aaccttcggt cgtcaccgtg attccggagc cggaatcggg catcagcacg aatttgataa
    11281 attagattta gccaaaaaag acgaaaaagg caatgcagta attccggaag tttcacacgc
    11341 tcatcttgcc aataaaacgg ggctgaaaat cctacgccgt tcattctcct attcaagcgg
    11401 tattgatgat aaagggcaat ttgattcagg gttgttgttt gtctctttcc aacaaagtcc
    11461 ggagcaattt atcaaaatcc agaacgctct cggcaatgtg gataaaatga atgaatacat
    11521 cactcatatc ggcagtggtt tatttgcctg ttttgccggt gtgaaagatg aaaatgacta
    11581 ccttggcaaa gcgttgtttg atttaattta gggaaaagga aatgaaatta aaagcattag
    11641 tgctaattcc gttactcttt tcgagtacag gattgcttgc caaagtgaat gtcagcccct
    11701 tatttgttca gctttccgat gcaatggcag agagtaaaaa aggggaattt gcaaaatcca
    11761 gccaaaattt gaccgcttta cagcacgatt ttgagcagat tagccagcac gattccctcg
    11821 ccggagttga agtacagacc gctctgaaaa aagcgattga aacacccaat gctgaaaact
    11881 tagagagcct ttctaaaaac tctatgcgtt tgaaaaagaa caaaacccta gcggttatgc
    11941 tgaaaaacat caggattttg tggcaaaaat gacgccgctt tatgcagaac ttgctcaaac
    12001 cgtgccaact caagaaatcg ccaaaatcaa atgggcggct tatcagtttg gtaagaattg
    12061 ggtaaaacag gaaaaagcag tacgggaaat cagtcttccc cattatggca aatttgagcg
    12121 tattcttggt ttaatgcgaa ttaatctgaa cgctgaaaag ccggatatgg caaaaatcag
    12181 tgaactggtt tccgaactag gtgtggtaat ggcagacttt aagcaagtta aagtgaaata
    12241 gtaaaaaatc ggggcaaatt atttgccccg ataacactaa aataacgtcc aaatcggttt
    12301 acattcttgg ggtaattcca aacttttacc gagctcaatc cagccagttg ggtagtggaa
    12361 atcagaaccg accgagccat ataaatcaaa ctcttttgcc caacgggcaa gtaattgccg
    12421 ttgatcaggt gtttgtccgc agcctgatac ttcaatgcca tcgcctccgg cttgtttgaa
    12481 atctgcgatt aaacggcgaa tccaacgagc agtcatttta tagcgtagcg ggtgagcaat
    12541 cgaaatcaca ccgcctgagg tgtgggtaac attcaccgcg tcttctaaac tactccatct
    12601 cggtttcaca taggcaggtt tccccattcc cagataacgc ttaaaggcgt gttcaatatt
    12661 gcggacatag ccttgttcat acaaaaaacg cccataatgt gcccgagtta cttcccctgt
    12721 tgccaacgct tttgccccct cataggcatt tgcaatcccg acttttgcta atttttcacc
    12781 aatttcgacc gctctctctt cccttaattg ggcttggtta tccaaaaact tcaccagctc
    12841 ctcgttgttt tcatcaatat tcaacgccgc aagatgaata cttttttctt gccataaaat
    12901 cgaaatttcc accccagaga taagctcaag cggttgattt tgggcaaaat ttttcgcttc
    12961 ttgaatgccc gaaatcgtat cgtgatcagt taaagctagc attgttaccc cttgctctac
    13021 cgcacgttgt accaattcag tgggagaaag tacgccatca gaggcggtac tgtgggcgtg
    13081 taaatcatat ttcattttat ttatccttaa attaagccgg cagtcctgaa aaattggcga
    13141 taggcttcgg ttttgttggc taagctgagt ggataagccc tcgacgtcga aggcaggcga
    13201 tataaataaa gttctcttgt ggcggaataa ggatagacca cccattcgtt ggttttcgga
    13261 gctttgtgtt tttccggcaa taaaccgagc aacgtatcgg ttgccaaacc acctgtggta
    13321 aatagccatt tcagtttggg taatttgagc aacagttcgt ccatatcgat aggatcaaca
    13381 atttttaaat ctttatctga agcgtttcct tttaaacgaa tcgctgtttt tgccgaagaa
    13441 cagagcgcaa cgcccttttc tcgcaaaaac gcctcaatcc gaatcggatc aaagcgtttt
    13501 tcttcaccaa ctcgaaaata gttagggtca gcataaaaaa tattgcccat aattcgccac
    13561 atatcatttt gaaaattcgg gtaatgaaat tccatacaac gcttttccga tgtaggtgga
    13621 aaagtgccga ccattaccac cgttgcttgt tcaggtaaaa tagggtcaaa cgggtgctgt
    13681 tctagcggta aattatccat tgtcatttaa tcaactcttt taacatcttg agcttttcgg
    13741 ttttatctag gggctgttcc gctactctgt taagctcgct cagcaatttt tcatcttttg
    13801 caacattttg acgataaatg accgcttgtt gttgcgaaat ctgctcggcg taagcggtca
    13861 aattttctaa taattttacc ttttccgggt tgtcgtgatg ttgttggaac aagtcgtcaa
    13921 tcgattgggc gaactgcgct gcttttgcct caatttgctg gttgcaatgt ttctgccatt
    13981 tgatctgctc ggctcgactg agtgtttgtg gatagtgcct tgctcggtaa tggaatagta
    14041 acgcctctac tcgagggtct tcaaatttca agccgtggtt ggctaaatct tcaggcggta
    14101 gcgtgcgtaa aatcgccata ttatttttat ccgcaggcga gaaaaagccg tcatacaaag
    14161 tggtttctac attggtcgaa ggctcaaacg tgcgttcttc attaaaaatt tcaatcactt
    14221 tttcccgaat cagcgatttc tgtgctttta aagttttcaa attttccaaa cataaagctc
    14281 tgtctatgcc taaacgttct gcattttcag gcagtaaggt ttttgccggt gctaaaatcg
    14341 ggcatttatt aatatgcact aattttaacg gcacaggtaa ctcattttcg gctaattcat
    14401 ctcgtttggt gtataaacgc tgacgtaaaa cctctgcatt ttcagtcaat aagccattca
    14461 tatcgcccga taaatcacac acaattacgg cattttgatt agttgagtgc caagccagtg
    14521 gcacaaccca agcggtattt cctcgatagt tgcccagcat accggaaacg tgcacaagcg
    14581 gtgtcatttc accagtgtca attaacttct ctacttcttt tttactgcgt aaattaaaga
    14641 aaaaatcgaa caactttggc tgtttttgct taattaattt tgccattgcg atggtggcat
    14701 acacatcaga catcgcatcg tgtgcatttt catgggcaat gccattggct ttggtgaggt
    14761 tttccaattt aaaacttggc ataccggttt catctgttgg ccattcaata ccatcaggtc
    14821 ttaacgcata acaggcacgg actaaatcta acaagtccca acgagaattt ccgtttttcc
    14881 agctatattc gtaaggatcg taaaaattgc ggaagaaggt ataacgggtc atctcatcat
    14941 cataacgaat attgttataa ccgatagtac aagtattcgc tcggctaaat tcagcgtgaa
    15001 ttcgggctgc aaattccggc tcagatacac cttcagcgtt acattgttgc ggtgtaatcc
    15061 cggtaaccat caccgcttcg gggctgggta aataatccgg cgtttgctta caaaaaaaca
    15121 ttaccggttc accgataata ttaaaatccg catcggttcg aataccggca aattgtgccg
    15181 gacgatctaa cgccggactc acgccgaaac tttcataatc gtaaaagaaa aaagagaatt
    15241 tatcgctcat tcgttcaatt tgttagaaaa aattgggctg attgtagcac agtaaggcag
    15301 aaaggaggga atacaagcgg tcaatttccg ttagaaattt gcaaatgcta aaataaaaaa
    15361 agcccctaat caaaaaagcg aaaaggggcg gaggtcttac ctaatgataa tattattttt
    15421 ataaatcaat tagttaagat gtttttgtcg taaaaatatc gagattatta aaaacaccta
    15481 caataaagca atacctcagc
//
LOCUS       DANMBQ010000052        15470 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.052, whole genome shotgun sequence.
ACCESSION   DANMBQ010000052 DANMBQ010000000
VERSION     DANMBQ010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15470
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.052"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            228..1418
                     /gene="malE"
                     /locus_tag="PXE92_001338"
     CDS             228..1418
                     /gene="malE"
                     /locus_tag="PXE92_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter
                     substrate-binding protein MalE"
                     /protein_id="HDL5760589.1"
                     /translation="MKNKCVKFTLATLATLVLSGTVMAKMTEGKLVIWINGDKGYNGL
                     AEVGKKFEKDTGVQVLVEHPDRLEEKFAQVASTGDGPDIMFWAHDRFGGYAQSGLLAE
                     VNVSKEFKDKFVDFAWDAETYNGKIIGYPVAIEAISLIYNKDLVKEAPKSWEEIIELD
                     KKLKKEGKNAIMWNLSEPYFTWPIAASNGAYAFKFANGKYDPKDIGVNNEGAVKALQF
                     VVDMVKNKHISADMDYAVAEASFNKGQSALTINGPWSWGNIDKSGIKYGVTLLPTLNG
                     QASKPFVGVLSAGVNSSSPNKDLAKEFLENYLLTDDGLDAVNKDKPLGAVALKSYQEK
                     LAADPRIAATMANAKNGEIMPNIPQMSSFWYAEKSAINNAVTGRQSVKEALDDAHSRI
                     QKQQ"
     gene            1537..3075
                     /gene="malF"
                     /locus_tag="PXE92_001339"
     CDS             1537..3075
                     /gene="malF"
                     /locus_tag="PXE92_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalF"
                     /protein_id="HDL5760590.1"
                     /translation="MLTQTQSKSTHWLKYLLAGLVLLLDFYLVVLMYSQGEYLFAILT
                     LIILTSGVYIFTNKNTYAWRYVYPGITGMAIFILFPLVATIAIAFTNYSGSNQLSFER
                     AVSVLTEQRYFAGDKYQFTLYPQADNKYQIALTNPTTEQTFVSEPISLATGTNVVVTE
                     QNRPTGEVAPLKVITQNRAALQSMKVVLPNNNELTMSSLRQFSEQKPRYQFDEENKIL
                     LNNETGKRYQANDETGFFQSIDENGHWQSETLEPGYTVTSGFNNFIKIFTDEGIQKPF
                     VQIFIWTVIFSLLTVVFTVILGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILI
                     FKGLFNQSFGEINMILNQLFGISPEWFNDPLLAKVMILIVNTWLGYPYMMILCMGLLK
                     AIPADLYEASAMDGASTWQNFSKITFPLLLKPLTPLMIASFAFNFNNFVLIQLLTNGR
                     PDMIGTTTPAGYTDLLVSYTYRIAFEGSGTQDFGLAAAIATIIFLLVGGLALLNIKAT
                     KMEL"
     gene            3128..4018
                     /gene="malG"
                     /locus_tag="PXE92_001340"
     CDS             3128..4018
                     /gene="malG"
                     /locus_tag="PXE92_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001252048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalG"
                     /protein_id="HDL5760591.1"
                     /translation="MAIVQSKSVRYRVWATHFILICFLALIIFPLLMVIGISLRPGNL
                     AIGDIIPSQISWEHWQAALGFDVTHADGTVTPPPFPVLRWLWNSIKVATITSIGIVTL
                     STTCAYAFARMKFKGKKTILQGMLIFQMFPAVLSLVALYALFDRLGQYVPFLGLNTHG
                     GVIFAYLGGIALHVWTIKGYFETIDGSLEEAASLDGATPWQAFRLILLPLSVPILAVV
                     FILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLYPQNYLWGDFAAAAVLSAIPITL
                     VFLLAQRWLIGGLTAGGVKG"
     gene            4093..6150
                     /locus_tag="PXE92_001341"
     CDS             4093..6150
                     /locus_tag="PXE92_001341"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HDL5760592.1"
                     /translation="MKNALPYLCLFYTSSLFAQSWQHSHFSDFNDDLEKHFFQSQVQL
                     EKGSYPLRFKFGEQCYQPQQAIKLNQSVALVPCINEAPQLRLFRQGNYLAQIDLRSGT
                     PTPTISVEQQLQHNEAMFQSCPNWDKKPIEIDVSSTFAEGESVSDFYSGNTAIVKNGK
                     VTLMPNENASGLILLEKSNTENTATFDWKNATVYFVLTDRFYNGDPTNDHSYHRQKDG
                     MQEIGTFHGGDLKGLTEKLDYLQQLGVNVLWISSPLEQMHGWVGGGDKGDFPHYGYHG
                     YYHLDWTKLDANMGTEDDLSRFVQQAHQRGIRVLFDVVMNHTGYATLADMQEFNFGGF
                     YLTPDEISRTLGEKWTHWKPKSGQNWHSFNDFIRFNDNQAWQNWWGKEWVRADIADYD
                     SPKFDDLKMSLAALPDLKTESEQAVKLPEFFANKNTNAKTLPNAKVRDYLIGWLSDWV
                     RKYGIDGFRVDTAKHVEKSTWLVLKQSAQQALNEWQKANPNAGFNDRFWMTGEAWGHG
                     VFKSDYYQNGFDAMINFDFQDQAKQGLNCFAHIEPIYAEMNRKLSDFNVLSYLSSHDT
                     RLFFHSDSEQNIEKHKTAANLLLLSPGAVQIYYGDESGRTFGATGSDLIQGTRSDMNW
                     QELQQDPQKQALHQHWQKLTQFRQRHPAIGAGVHQLIKNDSYFAFKRVLNEDKVMVVW
                     AGN"
     gene            complement(6264..8990)
                     /gene="malT"
                     /locus_tag="PXE92_001342"
     CDS             complement(6264..8990)
                     /gene="malT"
                     /locus_tag="PXE92_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
                     /protein_id="HDL5760593.1"
                     /translation="MLIPSKLVCSFRLQNSIPRKRLIQELDKSCSYPVVLINAPAGYG
                     KTTLVSQWIENKKNIGWYALDEGDNNSDRFATYFSAALHSAINEEIDVLLEENRKANL
                     LALFNQLLIKAAAFSEHFYLAIDDYHIIENDEIHEALKYWIKHQPSNMTLILISRSIP
                     PLSIASLRVQEQLLEIDINQLMFDHQESTAFFQARLGSELNQQDVIALCNEVEGWPTA
                     LQLISLFAKNKSHTLQVPLQDIAKRLAKSNHFHINEYLADEVLNKVDEETRLFILRCS
                     VLHSMNESLVQAVTGEQNSRTKLESLEKQGLFLQQMANSKWQSSDDSWWKFHPLFASF
                     LNLCCQNELYAELPQLHQKAANAWLQLGYVTEALHHAMQLSDTGLLLNILSKHAWTVF
                     HQGELKLLEESLNCLDYAHLTEHTNLVLLKAWLVQSQHRHIEVGGILADFSRALTENK
                     IELSKTANAEFNVLRAQVAINSGDENTALQLASEALNDLSENAYYAHIVATSIIGEAH
                     HCHGNLAEALAMLQKAERMARQHHTYHNILWSQLQQSEILLAQGFSQAAYEMLDKASE
                     FVKENHLQKVPMYEFLLRSKGKILWEWYNLDKAESMAVAGMNALSKFEDKLQCLTLLT
                     KISLARGNLDNTARLLGEVEQLEHSHSYHHDWIANADQVRIFYWQMTNDVSAVRNWLI
                     QNPSPVSDKNHFTQVQWRNIARSRILLEEYHEAKAILDNLIETAEKFSLISDLNRALI
                     VRNRLYFLQGEKELAQQDLIQALKLTRQTNFISAFVIEGDVMAQQIRHLLQLNVLDEL
                     VLHKAQFILRNINQFYRQKFAHFDENFVNQLLKNPKVPELLKISPLTQREWQVLGLIY
                     SGYSNEQISDELQVAATTIKTHIRNLYQKIGVTNRNEAISYTKELLMLMGYH"
     gene            9154..11523
                     /gene="malP"
                     /locus_tag="PXE92_001343"
     CDS             9154..11523
                     /gene="malP"
                     /locus_tag="PXE92_001343"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HDL5760594.1"
                     /translation="MTFNSIVEKYCRYFDVTDPKHFTLQQWYQVVAEGSLELIYSQPA
                     TKPTESRHVNYLSMEFLIGRLTGNNLMNLGYYEQIRDYLKQYQVELVDVLEQERDPAL
                     GNGGLGRLAACFLDSMATVGQNATGYGLHYQYGLFKQSFKEGMQKEAADTWARDSYPW
                     HRFNPSKTRHIGFGGKIKHIQADQYEWQPKLTIQGKAFDLPIVGYKNNIIQPLRLWQA
                     DSDQSFDFDAFNEGKFLSADKTIVNAAALTQVLYPNDNHQAGQKLRLMQQYFHCACSV
                     ADILDRHISEGYSLEDLAKRQVIQLNDTHPTLAIPELMRVLLDEHQFTWEQAWDICSN
                     TFAYTNHTLLPEALEQWDQRLFKQLLPRHYQIVEKINDIFHDKVQAEFGDDAKIWEKL
                     AVLFDYRVRMANLCVVTCFRVNGVAEIHSDLLVTDLFPEYHKLFPTKFCNVTNGITPR
                     RWIRQANPQLSDLLDRTLKQDWTHNLELLKGVEQYADDTGFREEYQRIKRNNKVVLAN
                     EIHKTLGLNVNPNAIFDVQIKRFHEYKRQHLNLLNIIATYQSLKANPNQDYTPRLFLF
                     SGKAAPGYYLAKNIIHAINNVADIINNDKQVNDRLQVAFLPDYRVSLAEKIIPAADVS
                     EQISMAGKEASGTGNMKLALNGALTLGTLDGANVEIADMVGEENVFIFGHTVESVREL
                     LAKGYQPKAYYNQDPILKNAVDFLATGKASNGDKEAFKLMLDSLLERDPFLVFADFDS
                     YRQAQEKIGVAYLDQETWLRSAILNTARLGAFSSDRSIKDYQQRIWLNR"
     gene            11605..13683
                     /gene="malQ"
                     /locus_tag="PXE92_001344"
     CDS             11605..13683
                     /gene="malQ"
                     /locus_tag="PXE92_001344"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL5760595.1"
                     /translation="MKITAKQYYRAGIMPYFFDERGVKKTASEKIKHSLFKAFNGNTQ
                     ARETPIPTVNIFYQHQPCFLPFHLADKKHPLTGTWQLQLENSNQIISGKIKARGITLP
                     QDLPLGYHQLQLKTVDKTFNCTIIIAPERCYQPQAVIEQKRLWGTFLQLYTLKSAHNW
                     GIGDFGDLKDFIQQIAPYQADFIGLNPIHSLFPANPNSASPYSPSSRRWLNIAYIDIN
                     QLAEFQQSDEAQTWFHSAEIQQQLSELRTQDWLNYEQIIPLKLKGLRFAFAKFQQNMT
                     ACAAPAFIEFVQKGGESLQVQATFDALHQHLSAQFADQWGWDFWEKAYQDYHSAAVQQ
                     FRETHKTDIEFYLWLQFVADQQLAECDAICRQQNMRIGMYRDLAVGVSPNGAETWNDK
                     QLYCLNASVGAPPDVLGPQGQNWGLTPMNPHVLKQQAYRPFIELVRANMSHCGALRLD
                     HIMSLLRLWWIPKGDSAVNGAYIRYPVDDLIAILALESQRHQCLIIGEDLGTVPKEIV
                     SKLKNAGILSYKIFYFEFDEQGKSRDLQHYPYQAMTTLSTHDLPTINGYWRGYDFELG
                     EKFGVYPNSNILAILKQDRVNAKAKILQRLQEHNVEIAPEISEQLNSPVNTAFIHCLQ
                     TYVANVSSGLFGFQPEDWLGMTEPVNIPGTSTQYANWRRRLSVNLEEIFTDKDIQALL
                     KEVNLIRKNQ"
     gene            complement(13748..15409)
                     /locus_tag="PXE92_001345"
     CDS             complement(13748..15409)
                     /locus_tag="PXE92_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HDL5760596.1"
                     /translation="MSEIALTVSLLSLVAVLGLWIGHIKIRGVGLGIGGVLFGGLFVS
                     HFMAQFDVKLDAHTLHFIQEFGLILFVYSIGIQVGPGFFASLKHSGLKLNGFAVLIVL
                     ISGILVILIHKFFNVPLPVILGIFSGAVTNTPSLGAGQQVLAELSAESVTEIMGMSYA
                     IAYPFGIIGILLSMWLIRILFRINIEAEAEAFNKQQNRSKDQLSTLNVRLTNPNIHGL
                     TLKQIPDFNLHEVAYSRLKRGNELSIPRVDTILQIGDILHLVGEESSLRKMQIILGEA
                     VDVSVSTKGTIYRSERAVVTNEKVFGKQIRQLMLKGKYDVVISRLNRAGVELVPTGDM
                     TLQFGDVLNLVGRQADIEMVMTIIGNAHSKLQQVQMLPIFIGIGLGVLLGSVPIYLPG
                     FPVALKLGLAGGPLVVALILARIGSFSKLYWFMPPSANLALREIGIVLFLAVVGLKSG
                     GRFLETLLSSEGVEWICYGAIITFVPLMIAGLIARMYNKVNYLTICGLLAGSMTDPPA
                     LAFANEIKEGNGAAALSYATVYPLVMFLRIMLPQVLAIMLWVSGG"
BASE COUNT         4765 a         3206 c         2983 g         4516 t
ORIGIN      
        1 attcagaaaa attaaataaa ttttgtgatc aacctctcat ttttaatgcc tatttttgtg
       61 aagcagatca caaaatgata aaaaatgtta cttagatcat acttttagct tggggggcgt
      121 agagcaaagg gtgatctcaa atagattgta tagcccataa tttgccataa tttaataaat
      181 gggttgtttc atatccgttt cttttattta acttcaagga gttttttatg aaaaacaaat
      241 gtgtcaaatt caccttagct actcttgcta ccttagttct ttcaggaaca gtaatggcaa
      301 aaatgacgga aggtaaactc gttatctgga ttaacggtga taaagggtac aatgggcttg
      361 ccgaagtcgg taagaaattt gaaaaagata ccggtgttca agttttagtt gaacacccgg
      421 atagacttga agaaaaattt gcacaggttg cctcaactgg tgacggtccg gatattatgt
      481 tctgggctca cgaccgcttt ggtggttatg cacaatccgg tttattggct gaagtgaatg
      541 taagcaaaga atttaaagat aaatttgtcg attttgcttg ggatgctgaa acttacaacg
      601 gcaaaattat cggttatccg gttgcgattg aagcgatttc attaatttat aataaagatt
      661 tagtgaaaga agcaccaaaa tcttgggaag aaattattga gttagataaa aaactcaaaa
      721 aagagggcaa aaatgccatt atgtggaact tatccgagcc ctatttcacg tggccgattg
      781 cggcttcaaa cggagcttat gcattcaaat ttgctaacgg caaatacgat ccaaaagata
      841 ttggtgtgaa caatgaaggg gcagtaaaag cactacaatt tgtagtcgat atggtgaaaa
      901 ataaacatat tagtgcggat atggactatg ccgttgccga agcctccttt aataaaggac
      961 aaagtgcctt aaccatcaat ggtccttggt cttggggcaa tattgataaa agcggtatta
     1021 aatatggtgt aactttactc ccaacattaa acggtcaagc ttctaaacca ttcgtagggg
     1081 tgttaagtgc cggtgtaaac agctcaagcc caaataaaga tttagccaaa gaattcttag
     1141 agaattattt actcaccgac gacggtttag atgcagtcaa taaagataaa cctttaggtg
     1201 cggtggcgtt aaaatcttac caagagaaat tagcggctga tcctcgtatt gctgcaacga
     1261 tggcaaatgc gaaaaacggt gaaattatgc caaatattcc gcaaatgtct tctttctggt
     1321 atgccgaaaa atctgctatc aataatgcag tgaccggtcg tcaatcggtg aaagaagcat
     1381 tagatgatgc acattcacgc attcaaaaac aacaataatt cttcatcatt ctgagtgggt
     1441 tattatgacc cactctattt ttagattcac cctaaataca ataaaagtac agtaaaagta
     1501 ccgtaacaaa atgcagtaaa aattcgaggt gctgttatgc taactcaaac tcaatccaaa
     1561 tccactcatt ggctcaaata tctcttagcc ggattagtct tgctccttga cttctatctt
     1621 gttgtcttaa tgtactcaca aggtgaatat ctttttgcta ttttaacgct gattattcta
     1681 acttccggtg tctatatttt taccaataaa aatacctatg cttggcggta tgtttaccct
     1741 ggcattaccg gaatggcaat ttttattttg tttccgctgg ttgcgactat tgcaattgcg
     1801 tttaccaact atagtggttc taatcaatta tcctttgaac gagcggtatc cgtcttaact
     1861 gaacaacgct attttgccgg agataaatat caattcaccc tttatccgca agcagataat
     1921 aaatatcaaa ttgcattaac caatccgacg acagagcaaa cttttgtgtc agagccgatt
     1981 tcattggcta ccggaacgaa tgtggttgta accgagcaaa acagaccaac tggcgaagtc
     2041 gctcccctta aagtgattac gcaaaatcgg gccgcacttc aatcaatgaa agtggtttta
     2101 ccgaataata atgaactgac aatgagctca ttacgtcaat tctccgagca aaaaccacgc
     2161 tatcaatttg atgaagaaaa taaaatatta ctcaataatg agactggcaa acgttatcaa
     2221 gcaaatgacg aaaccggttt cttccaatcg attgatgaaa acggtcattg gcaaagcgaa
     2281 acacttgaac caggttatac tgtcacatca ggctttaata acttcattaa aatttttacc
     2341 gatgaaggta ttcaaaaacc ttttgtccaa atatttattt ggacggtgat cttctcttta
     2401 ttaaccgttg tctttaccgt tattctcggt atggttcttg cctgtttggt acaatgggag
     2461 gcattaaaag gtaaagcagt ctatcgtgtc ttattgattt taccttatgc cgtaccatca
     2521 tttatttcga ttctgatttt taaaggacta tttaaccaaa gttttggtga gatcaatatg
     2581 attttaaacc aactattcgg catcagccct gaatggttta acgatccgct ccttgccaaa
     2641 gtgatgatct taattgtcaa tacgtggtta ggttatcctt atatgatgat tttatgtatg
     2701 gggttactca aagctattcc ggctgattta tatgaagcct ccgcaatgga cggtgcttcc
     2761 acttggcaaa acttcagtaa aatcactttc ccattactgt taaaaccact tactccgtta
     2821 atgattgctt cgtttgcatt taactttaat aactttgtat taattcaact attaacaaac
     2881 ggtcgcccgg atatgattgg aacaaccact ccagccggtt ataccgattt attagtcagc
     2941 tacacctatc gtattgcctt tgaaggaagt ggtacgcaag atttcggctt agcagccgcc
     3001 atcgcaacca ttattttctt attagtcggt ggcttggcac tcttaaatat caaagcaacc
     3061 aaaatggaat tataaaagcg ggagggattt aacaatcccg accccaaact aactttagga
     3121 gttatatatg gcaattgttc aatctaaatc tgtgcgttat cgggtatggg caacccattt
     3181 catcttaatc tgtttccttg ccttaattat tttcccttta ttaatggtga ttggcatttc
     3241 gttacgaccg ggaaatctgg ctatcggtga tattattcca agccaaattt cgtgggaaca
     3301 ttggcaagcc gctcttggtt ttgatgttac acacgccgat ggtacagtca caccgccgcc
     3361 attcccggtg ctacgctggt tatggaactc catcaaagtg gcaacaatta cctctatcgg
     3421 cattgtaacc ttatctacga cctgtgctta tgcatttgcc cgaatgaaat ttaaaggcaa
     3481 aaaaaccatt ctacaaggta tgctgatttt ccaaatgttc ccggcagtgc tttccttagt
     3541 tgccttatat gcgttgtttg atcgtcttgg gcagtatgta ccgtttcttg gtttaaacac
     3601 acacggtggt gttatttttg cctacttagg cggaattgcc ttacacgttt ggacaatcaa
     3661 aggctacttt gaaacgattg atggttcatt ggaagaagcc gcttcccttg atggtgcaac
     3721 cccgtggcaa gcgttccgat taatcttatt accgctttca gtgccgattt tggcggtagt
     3781 tttcattctt tcatttattg ccgccattac cgaagtaccg gttgcctcac tcctattgcg
     3841 tgatgtaaac agctacaccc tagccgttgg tatgcaacaa tacctctatc cgcaaaacta
     3901 tttatggggt gacttcgcag cagcggcggt cttatccgca attccgatta cgctggtctt
     3961 cttattggca caacgctggt taatcggtgg tttaactgcc ggcggcgtga aaggctagtt
     4021 tgcaaaaaat tctctaaaaa cgaccgcttg tcgagctgat actgcggtcg tcaatcttta
     4081 ttagggctgt ctatgaaaaa tgcgttacct tatctctgct tattctatac ctcaagcctt
     4141 tttgcccaat cttggcaaca ttcccatttt tctgatttta acgatgatct cgaaaaacat
     4201 ttttttcaat cccaagttca attggaaaaa gggagctatc cgcttaggtt caaatttggc
     4261 gaacaatgtt atcaacccca acaagcgata aaattaaatc aatcggttgc gttagtccct
     4321 tgtataaatg aagctccaca actgcggttg tttcgtcaag gcaactatct ggcacaaatt
     4381 gatctgcgaa gcggcactcc gacacccaca atcagcgtag aacagcagct acagcacaat
     4441 gaagcgatgt ttcaaagttg cccgaattgg gataaaaaac cgattgaaat tgatgtttct
     4501 tccacttttg ccgaaggcga atcggttagc gatttttatt caggcaacac cgctatcgtt
     4561 aaaaacggca aagtcacctt aatgcccaat gaaaacgcaa gcggtctgat tttgctggaa
     4621 aaaagcaata ccgaaaatac ggcaacgttt gattggaaaa atgccaccgt ctattttgtg
     4681 ctgaccgacc gcttttataa cggcgatccg accaatgacc acagctacca ccgccaaaaa
     4741 gacggaatgc aagaaatcgg cacctttcac ggtggtgatt taaaaggatt aaccgaaaag
     4801 ctcgattacc tacaacaact tggggtaaac gtattgtgga ttagctctcc gttagaacaa
     4861 atgcacggct gggttggcgg cggtgataag ggggattttc cgcattatgg ctatcacggt
     4921 tactatcatt tagattggac gaaattagat gccaatatgg gtactgaaga cgatttaagt
     4981 cgctttgttc aacaagccca ccagcgtggt attcgggtgc tatttgatgt ggtgatgaac
     5041 cataccggct acgcgacgct tgccgatatg caggagttta actttggcgg attttactta
     5101 acaccggacg aaattagccg cacattaggc gaaaaatgga cacactggaa gccgaaatca
     5161 ggacaaaatt ggcacagttt caatgatttc attcgcttta acgataatca ggcttggcaa
     5221 aattggtggg gaaaagaatg ggttagagct gatattgccg attacgacag ccctaaattt
     5281 gatgatttaa aaatgtcgct cgctgccctt cctgatctaa aaaccgagag cgaacaagcg
     5341 gtcaaattac ctgaattttt tgcaaataaa aataccaatg ccaaaacatt accaaacgcc
     5401 aaagtgcgtg attatttaat tggttggtta tccgattggg tcagaaaata tggcattgac
     5461 ggttttcggg ttgataccgc caaacacgtt gaaaaatcca cgtggctggt attaaaacaa
     5521 tcggcacaac aagccttaaa cgaatggcaa aaagccaatc cgaacgccgg ttttaacgat
     5581 cgcttttgga tgacaggaga agcgtgggga cacggcgtgt tcaaaagtga ctattatcaa
     5641 aacggttttg atgcaatgat caatttcgat tttcaagatc aggctaaaca agggttaaat
     5701 tgctttgccc atattgagcc gatttatgcc gaaatgaatc gcaaattaag cgacttcaat
     5761 gtgttgagct atttatcttc acacgatact cgattatttt tccattcgga tagtgaacaa
     5821 aatatcgaaa aacacaaaac cgccgcaaat ttgctgttgc tttcacccgg tgcagtgcaa
     5881 atctattatg gtgatgaaag tgggcggaca tttggtgcga ccggttcaga cctgatacaa
     5941 ggcacccggt cggatatgaa ttggcaagag ttgcagcaag atcctcagaa acaggcattg
     6001 catcaacatt ggcaaaaatt gacacaattc cgccaacgcc atccggctat tggcgcaggt
     6061 gtccatcaac tcatcaaaaa tgatagctac tttgcattta agcgtgtgtt gaatgaagat
     6121 aaagtgatgg tggtttgggc cggaaattaa atctacttta gcttcaagtt ttctctcttc
     6181 tggggaaaac ttgaagccgg ttcggggaaa caagttgcaa aaaattacta aaaatagacc
     6241 gcttgttccc catgagcttg tgatcaatga taccccatca acatcagcag ttctttcgta
     6301 tagctgattg cttcgttacg attcgtcaca ccgattttct gataaagatt tcggatatgg
     6361 gttttaatcg tggttgcagc cacttgcaat tcatctgaaa tttgttcatt gctatatccg
     6421 gagtaaatca aacccaatac ttgccattcc cgctgagtga gcggactaat ttttaagagt
     6481 tccggcactt tcggattttt caataattga ttcacaaagt tttcatcaaa atgggcaaat
     6541 ttttggcgat aaaattgatt gatgttgcgt aaaataaact gtgctttgtg caataccagt
     6601 tcatctagca cattaagttg caataaatgg cggatctgct gtgccattac atccccttca
     6661 atcacaaacg cactgataaa attcgtttgg cgggtgagtt ttagtgcctg aattaaatct
     6721 tgctgagcca attctttctc gccttgtaaa aaataaagcc ggttacgaac aattaatgcg
     6781 cgatttaaat cgctaatcag agaaaatttt tcagccgttt caattaaatt atctaaaatg
     6841 gctttcgcct cgtgatattc ctcaagcaag attcgagacc gtgcaatatt tcgccattgc
     6901 acttgggtaa aatgattttt atctgaaacc ggtgaggggt tttgaattaa ccagttcctc
     6961 accgcagaaa cgtcattggt catctgccaa taaaatatac gtacctgatc ggcgttggca
     7021 atccaatcgt ggtgataaga atgagaatgt tctaattgtt cgacctcgcc taataatcgg
     7081 gcagtgttat ccaaattgcc tcgagccaac gagatcttcg tgagtaaagt taagcattgt
     7141 aacttatctt caaatttaga taaggcattc attccggcaa ctgccattga ttcagcttta
     7201 tctaagttat accattccca taaaatcttg cctttagaac gtagcaaaaa ttcatacatc
     7261 ggcacttttt gtagatggtt ttctttcaca aactcgcttg ctttatctaa catttcatag
     7321 gctgcttgtg aaaacccttg ggcaagcaaa atttcagatt gttgaagctg tgaccacaaa
     7381 atattgtggt aagtatgatg ctgacgtgcc atacgctctg ctttttgcaa cattgctaat
     7441 gcttctgcca gattgccgtg gcaatgatga gcttcgccaa taatagacgt tgcaacaata
     7501 tgagcataat aggcattttc tgaaagatcg tttaacgctt cagacgctaa ttgaagtgcg
     7561 gtattctcat caccggaatt gatagcaact tgtgcccgta gcacattaaa ttccgcattg
     7621 gcagttttgc tcaattcaat tttattttca gttaatgcac gagaaaaatc cgctaaaata
     7681 ccacctactt caatatggcg gtgctggctt tgtaccaacc aggctttgag taacaccaaa
     7741 ttagtatgtt cggttaaatg ggcgtaatct aagcaattta agctctcttc caataatttg
     7801 agttctcctt gatgaaacac cgtccaagcg tgtttgctca aaatattgag tagtaatccg
     7861 gtatccgata actgcattgc gtgatgtaag gcttctgtaa catagcctaa ttgtaaccac
     7921 gcattcgccg ccttttgatg cagttgcggt aattcagcat ataactcatt ttggcaacat
     7981 aaatttaaaa aggaagcaaa aagcggatgg aatttccacc agctatcatc actactctgc
     8041 cacttactgt ttgccatttg ttgtaaaaac aaaccttgct tttcgagaga ctctaatttg
     8101 gtgcgactgt tttgctcccc tgtaacagcc tgcactaaag actcattcat tgaatgcaaa
     8161 accgaacaac gcaaaataaa caaacgagtc tcttcatcga ctttattaag cacttcatcg
     8221 gctaaatatt cgttaatatg aaaatggttt gatttggcta aacgtttggc aatatcttgc
     8281 agtggtactt gtagcgtgtg tgatttattt tttgcaaaaa ggctaattag ctgaagggct
     8341 gtgggccacc cttcaacttc gttacacagt gcgataacat cttgctgatt taactccgaa
     8401 cctaatcttg cttgaaaaaa agcggtactt tcttggtgat caaacattaa ctggttaata
     8461 tcaatttcca ataattgttc ttgcactctt aaactggcaa tacttaacgg gggaattgat
     8521 cgagaaatca agataagcgt catattagac ggttgatgtt taatccaata ttttaatgct
     8581 tcgtgaattt catcattttc aataatatga taatcatcaa tagcaagata aaaatgctct
     8641 gaaaatgccg cggctttaat caataattga ttaaataaag ctaataaatt agctttacga
     8701 ttttcctcta acaatacgtc tatttcttca ttgattgctg aatgcaatgc cgcactaaaa
     8761 taagtggcaa aacgatctga attattatcg ccttcatcta acgcatacca gccgatattc
     8821 tttttatttt caatccattg ggaaaccaga gtggttttgc cataacctgc cggtgcattt
     8881 atcaatacga ccggataact gcaagatttg tctaattctt gaattaaacg ttttcgagga
     8941 atgctgtttt gtaatcgaaa agaacaaaca agttttgatg gtattaacat aataaattca
     9001 attttctctc ataacaaaat agggatgata tatccaccat ttgtgttctc actacttcct
     9061 tataatcata ccatacaaga tgattattgg gatgatttga ttttatttgg attttacata
     9121 atagcgacat tcatctttaa ccgggggttt cctatgacat ttaattctat tgtagaaaaa
     9181 tactgtcgct actttgatgt gacagatcca aaacacttta ccttacagca gtggtatcaa
     9241 gttgttgctg aaggttccct tgagctaatt tatagccagc ctgcaaccaa accgacagaa
     9301 tcacgccacg tgaactacct ctcaatggag ttcttaatcg gtcggttaac cggcaataat
     9361 ttaatgaatt taggttatta cgaacaaatt cgtgactatc ttaaacaata tcaagttgaa
     9421 ttagtagatg ttttagaaca agagcgtgat ccggcattgg gtaatggcgg attaggtcgt
     9481 cttgctgcct gctttttaga ttcgatggca actgtcggac aaaatgcaac cggctatggg
     9541 cttcattatc aatatggtct gtttaaacaa agcttcaaag agggaatgca gaaagaagca
     9601 gcggatactt gggctcgtga cagctacccg tggcatcgtt ttaatccgtc taaaacccgc
     9661 catatcgggt ttggtggaaa aatcaaacat atccaagccg atcaatatga atggcagcct
     9721 aaattgacca ttcaaggcaa agcctttgac ttgccgattg taggttataa aaacaacatc
     9781 attcaaccat tacgtttatg gcaagcagat agtgaccaat cttttgattt tgatgccttt
     9841 aatgagggta aatttttaag tgccgataaa acgattgtca atgcagccgc actaactcaa
     9901 gtgctgtatc caaacgacaa ccatcaagcc ggacaaaaat tacgcttaat gcagcaatac
     9961 ttccattgtg cctgctcggt tgccgatatt ttagatcgtc acattagcga aggttattcg
    10021 ttagaagatt tagcaaaacg ccaagttatt caactcaatg atacccatcc aacgctcgct
    10081 atacctgaat tgatgcgtgt actgttagat gaacatcaat tcacttggga gcaggcttgg
    10141 gatatttgca gcaatacctt tgcttacact aaccatacct tattacctga agcacttgaa
    10201 caatgggatc aacgcctatt taagcagcta ttacctcgcc attatcaaat tgtggaaaaa
    10261 atcaatgata ttttccacga caaagtacag gcagaatttg gtgatgatgc aaaaatttgg
    10321 gaaaaattag ccgtgctatt tgattaccgt gtgcgtatgg caaacctctg cgttgtcacc
    10381 tgcttccgtg taaacggcgt tgcggaaatt cactccgatc tcttagtgac cgatctattc
    10441 ccggaatacc acaaattatt cccaacaaaa ttctgcaatg ttactaacgg catcacacct
    10501 cgccgctgga ttcgacaagc taatccacaa ttaagtgatt tattggatcg taccttaaaa
    10561 caagattgga cacacaatct ggaattatta aaaggcgttg aacaatatgc ggatgacacc
    10621 ggtttccgtg aagaatatca acgcattaaa cgcaataaca aagtggtttt agccaatgaa
    10681 atccataaaa cattagggtt aaatgtcaat cctaatgcga tttttgatgt gcaaattaag
    10741 cgtttccacg aatataaacg ccaacatttg aatttgttaa acattattgc gacctatcaa
    10801 tcgctaaaag ctaacccgaa ccaagactac acaccacgtc tattcctatt ctcgggcaaa
    10861 gctgcaccgg gttattattt agcaaaaaat attattcacg ctattaataa tgtggcagat
    10921 attattaata acgacaagca ggtaaatgat cgactacaag tggcattctt accggattat
    10981 cgagtcagtc ttgcggaaaa aattattcca gcagctgatg tatcagaaca gatttcaatg
    11041 gcaggtaaag aagcctccgg taccggtaat atgaaattgg cactcaacgg cgcattaacc
    11101 ttaggtacgc tagacggtgc caatgttgaa attgctgata tggtcggtga ggagaatgtc
    11161 tttatcttcg gtcacaccgt agaaagcgtg agggaattat tagcaaaagg ctaccaaccg
    11221 aaagcctact ataaccaaga tccgattctg aaaaatgcgg ttgatttctt agccacagga
    11281 aaagcctcta acggagataa agaggcattc aagctgatgt tagatagcct gttggaacga
    11341 gatcctttct tagtctttgc cgactttgat agctatcgcc aagcacaaga gaaaattggt
    11401 gtagcctatt tagatcaaga aacttggctg cgtagtgcaa ttttaaatac tgctcgtttg
    11461 ggtgcattta gctcagaccg ctcaattaaa gattatcaac aacgtatttg gttgaataga
    11521 taataaattc gggcgacttc tacaataaag gaagtcgcct attttctgct gtatttcata
    11581 tgtatttata tatggagaga aatgatgaaa ataactgcca aacaatatta tcgggctgga
    11641 attatgccct attttttcga tgagcgtggt gtaaaaaaaa cagcatctga aaaaataaaa
    11701 cattcgttat tcaaagcctt taacggcaat actcaagcaa gagaaacacc tatccctacg
    11761 gtcaacattt tttaccagca ccaaccctgt tttttacctt ttcatttagc ggataaaaaa
    11821 catccgttaa ccggtacttg gcagctacaa ctagaaaatt caaaccaaat tatttccggc
    11881 aaaattaaag caaggggaat tacattacct caagatttgc ccttaggtta tcaccaatta
    11941 cagctaaaaa cggtagataa aacctttaat tgcaccatta ttatcgctcc ggaacgctgc
    12001 taccaaccac aagccgtcat tgaacaaaaa agattgtggg gaaccttcct acaactatac
    12061 accttaaaat cagcccacaa ctgggggatt ggcgattttg gcgatttaaa agacttcatt
    12121 caacagattg ccccttacca agcagatttt atcggcttga acccgattca ctcacttttt
    12181 ccggcaaacc cgaattctgc cagcccatac agtccatcct ctcgccgatg gctgaatatt
    12241 gcttacattg atatcaatca gctagcggaa tttcaacaaa gtgatgaagc acaaacttgg
    12301 tttcattctg ctgaaatcca acaacaatta tcagaattac gcactcagga ttggttgaat
    12361 tacgagcaaa tcattccgtt gaaattgaaa gggctacgct ttgctttcgc aaaatttcag
    12421 caaaatatga ccgcttgcgc tgcccctgct tttatcgaat ttgtacaaaa aggtggtgaa
    12481 agcttacaag ttcaagccac atttgatgcc cttcatcagc atctatcggc acaatttgcc
    12541 gaccaatggg gctgggattt ctgggagaaa gcctaccaag actaccactc cgcagccgtg
    12601 cagcaattta gagaaacgca taaaaccgac atagaatttt acctttggtt acaattcgtt
    12661 gccgatcaac agctagcaga atgtgatgct atctgccgtc agcaaaatat gcgtattggt
    12721 atgtatcgcg atctcgccgt tggcgtcagc ccgaatggtg cagaaacgtg gaatgacaaa
    12781 caactttatt gcttaaatgc ctctgtcggc gctccgcctg atgtattagg tccgcaagga
    12841 caaaactggg gcttaacccc aatgaatccg catgtattaa agcaacaagc ctaccgtccg
    12901 tttattgagt tagtcagagc taatatgagt cattgcggtg cattacgcct tgaccatatt
    12961 atgtctttac tccgtttatg gtggatcccc aaaggcgata gtgcggttaa tggtgcttat
    13021 attcgttatc cagttgatga tttaatcgca attttggcac ttgaaagcca acgccaccaa
    13081 tgcctaatta tcggtgaaga tttaggtact gtgccaaaag aaattgtgag caagctcaaa
    13141 aatgcgggga ttttatctta caaaattttc tattttgaat ttgatgaaca agggaagagt
    13201 cgagacttac agcattaccc ttaccaagca atgaccacat taagcaccca cgatttaccg
    13261 actatcaatg gttattggcg tggctatgat tttgaattag gcgaaaaatt cggcgtctat
    13321 cctaattcga atattttggc aatccttaag caagatcgag tcaatgccaa agccaaaatc
    13381 ttacaacgct tacaagaaca taacgtagag atcgcacctg aaattagcga gcaacttaat
    13441 tctccggtga ataccgcatt tattcactgt ttacaaacct atgttgcaaa tgtaagcagc
    13501 ggattattcg gcttccaacc cgaagactgg ttgggtatga ctgagccggt taacattccg
    13561 ggaaccagta cacaatatgc aaactggcga cgtcggctta gtgttaacct cgaggagatc
    13621 ttcacagata aagatattca agccttatta aaagaagtta atttaatccg taaaaatcaa
    13681 taaaagttag ataagaaaaa aggcgacttt ccgtcgcctt ttgggcttat atgcttgatg
    13741 tctatcttta tccacctgaa acccacaaca taatcgctag cacttgaggt agcataatac
    13801 gcaaaaacat tactagtggg taaacagttg cataggataa cgctgcagcg ccatttccct
    13861 ctttaatttc attggcaaaa gcaagcgctg gaggatcagt cattgagccg gcaagtaatc
    13921 cacaaatcgt taaatagttt actttgttat acattctggc aatcaatcct gctatcatca
    13981 atggaacaaa agtaataatc gccccatagc atatccactc aacgccctca ctgcttaata
    14041 gcgtttcgag aaatctaccg ccagatttta aaccaactac cgctaaaaac agtacaatac
    14101 cgatttcacg caatgcaaga ttggcacttg gtggcataaa ccagtagagt ttactgaaac
    14161 taccaattct tgcaagaata agagcaacca ccagtggtcc accagccaag cccagcttta
    14221 acgcaacagg gaaacccggt aaataaatcg gtacagaacc aagtaatact cccaaaccga
    14281 tcccgataaa tattggcaac atttggactt gttgcaactt tgagtgcgca ttgccgataa
    14341 tcgtcattac catttcaata tcagcttgcc gccctactaa attgagaaca tcaccaaatt
    14401 gtaacgtcat atcacctgtt ggtactaatt ctacaccggc tcgatttaaa cgagaaatga
    14461 caacatcgta tttgccttta agcattagct gacgaatttg tttcccgaag actttttcat
    14521 tcgtcactac agcacgttca gaacggtaaa tcgtgccttt ggttgagaca gatacatcta
    14581 ctgcctcacc taaaataatc tgcatttttc gtaatgagga ttcttcacct actaagtgta
    14641 aaatatctcc tatctgtaga atcgtatcta cacgtggaat agaaagctca ttcccccgtt
    14701 ttaagcgtga ataagctact tcgtgcaaat taaaatcagg aatttgtttc aacgttaaac
    14761 cgtgaatatt tggattagtc agacggacat ttaaggtact aagttgatct ttacttctat
    14821 tttgctgttt gttaaaagcc tctgcttccg cctcaatatt gattcgaaat aaaatccgaa
    14881 tcagccacat tgaaagtaga attccgataa tgccgaacgg gtaagcaatc gcataactca
    14941 ttcccataat ttcagttaca ctctcagcgc ttaactcagc caatacctgt tgacctgctc
    15001 ctaaagaagg ggtattggtt acagccccgg agaaaatgcc taaaatcaca ggcaaaggaa
    15061 cattgaagaa tttatgaata agaataacta aaataccgct aatcagtaca atcagtaccg
    15121 caaaaccatt gagttttaag ccagaatgtt ttagtgaggc aaagaatcca ggtcctactt
    15181 gaattccaat tgaataaaca aataaaatca gcccgaactc ttgaataaaa tgaagcgtat
    15241 gggcatcgag cttcacatcg aattgcgcca taaaatggga gacaaacagc ccaccaaata
    15301 acactccccc tatacctagc cccacgcctc tgattttaat atggccaatc cataagccta
    15361 gaacggccac taaagataat aaactgacag taagtgcaat ttcgctcatt acagcctctc
    15421 tttaatatga aatacctcaa aaatggtatc caattctacc aaatctcaaa
//
LOCUS       DANMBQ010000053        15409 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.053, whole genome shotgun sequence.
ACCESSION   DANMBQ010000053 DANMBQ010000000
VERSION     DANMBQ010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15409
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.053"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            122..1630
                     /locus_tag="PXE92_001346"
     CDS             122..1630
                     /locus_tag="PXE92_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL5760597.1"
                     /translation="MSNQSSNAPQRETFSGRGAFIMAAIGSAVGLGNIWRFPYTTYEN
                     GGGAFILPYIIALLTAGLPLLFLDYSIGHKYRGGAPLAFRRFSSKFETFGWWQVLINV
                     IIGIYYAVVLGWAASYTYFSFSGAWGDKPVDFFIGEFLKMGDITQGVSFEFVGMVTGP
                     LIAVWLIAIAVLAMGIKKGISAASNLLMPQLIVMFLVLVGYSLTLPGAAKGLDALFTP
                     NWEKLADPSVWIAAYGQIFFSLSICFGIMITYASYLKKETDLTGSGLVVGFANSGFEL
                     LAGIGVFAALGFMATAAGQEVNEVAKGGIGLAFFAFPTIINQAPMGALVGVLFFGSLT
                     FAALTSFISVIEVIISAVQDKLNSGRVKATLLVGIPMMVVSVLLFGTTTGLPMLDVMD
                     KFVNQFGIVAVAFVSLIAIVTSEKLSTLEKHLNEVSSFKVGFIWRLCIVITSGVLAFM
                     LFSEIAKVYREGYEGYPSWFVNTFGWGMAIGLVVVAYLLSKMAWKNEPKGDE"
     gene            1630..1728
                     /locus_tag="PXE92_001347"
     CDS             1630..1728
                     /locus_tag="PXE92_001347"
                     /inference="COORDINATES: protein motif:HMM:NF028261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine/alanine import family NSS transporter
                     small subunit"
                     /protein_id="HDL5760598.1"
                     /translation="MSSAAIITMVVAMTIIWGGLLFAIKRLPKEEQ"
     gene            complement(1776..2039)
                     /locus_tag="PXE92_001348"
     CDS             complement(1776..2039)
                     /locus_tag="PXE92_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrxA family glutaredoxin"
                     /protein_id="HDL5760599.1"
                     /translation="MFVEIYGRLSCPYCVRAKTLAEKMKQELSDFDFKFIDMIAENIS
                     KQDLEPRVGKPVATVPQIFVDNNHVGGCTDFQAFVEEKFGITV"
     gene            2199..3533
                     /gene="srmB"
                     /locus_tag="PXE92_001349"
     CDS             2199..3533
                     /gene="srmB"
                     /locus_tag="PXE92_001349"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HDL5760600.1"
                     /translation="MTQLMTFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRD
                     LLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAQALAK
                     FTQLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEA
                     DRMLQMGFGQDAEKIAAETRWRKHTWLFSATLEGELLEDFAERLLNDPIKVDAEPSRR
                     ERKKIQQWYYHADNVEHKTKLLARIISEFSVERAIVFVRRREDVRELSETLRKRGIRS
                     TYLEGEMAQTQRNQAINRLKEGVVNVLVATDVAARGIDIDDIDFVLNYDLPYSADTYL
                     HRIGRTARAGKKGSAISLVEAHDYKLLGKIKRYTEEVLKPRIIEGLEPRTKAPKDGEL
                     NVTSKKEKARIKKKKEAKKEAAKPKVKVRHKDTKNIGKRRKPSSESAAVKQA"
     gene            complement(3602..3895)
                     /locus_tag="PXE92_001350"
     CDS             complement(3602..3895)
                     /locus_tag="PXE92_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5760601.1"
                     /translation="MSKTMQQKAAEAHNMCRLKGDSMLDNADRQIAFEAVYESEELAQ
                     QAVEFFAQKAKSVETEPCEIQSEITQIAEGFLMKMWITFSCQAEVILFQMAVR"
     gene            complement(3897..4559)
                     /locus_tag="PXE92_001351"
     CDS             complement(3897..4559)
                     /locus_tag="PXE92_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL5760602.1"
                     /translation="MPFPDEISELKGYFDGTNPVSAYPAQGLNVPFYILGSSPESAYL
                     AAERGLPYAFASHFAPRFMDDAIRIYRSHFKPSDVLDKPYVILGVNAIVAETDEEATQ
                     LATTQTQFFLNVVTNAQQNLQPPLESDDKVWENFVKAEIVPHFGPVAFEQNALYRQEK
                     TVVRQMTECSLIGSPQSVEQQLKALKARVEIDEIMAVNYIFDEQKQHQSYTWLKQITD
                     KV"
     gene            complement(4543..4995)
                     /locus_tag="PXE92_001352"
     CDS             complement(4543..4995)
                     /locus_tag="PXE92_001352"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MsnO8 family LLM class oxidoreductase"
                     /protein_id="HDL5760603.1"
                     /translation="MVLQVLNSKAIQPFLYANSENKMTNLSILNLVPIREGQTAKQAV
                     DSMVKLAKHAENIGIERYWIAEHHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLP
                     NHSPYIVAEQYGTLETLYPNRVELGLGRAPGTDMRTASALRPEFAFPR"
     gene            complement(5015..5653)
                     /locus_tag="PXE92_001353"
     CDS             complement(5015..5653)
                     /locus_tag="PXE92_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL5760604.1"
                     /translation="MKKFALKTVLVALSALFAFNATAVAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELNYKIPSQIKAKLPADSKLVQYHVNFLGRQSENLTRAWAL
                     AMALGAEDKVKTALFEAAQKDAFKSMDDIRAVFIANSISAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFSDSSSTNDFIQRYIDAVVFLSKK"
     gene            complement(5697..5966)
                     /locus_tag="PXE92_001354"
     CDS             complement(5697..5966)
                     /locus_tag="PXE92_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HDL5760605.1"
                     /translation="MKCKRLEELLELLGEHWRKNPDLHLIDILQQLSVEVSEPDNFHA
                     LRDEVLIYQLKMRNADKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            6058..7167
                     /gene="mobA"
                     /locus_tag="PXE92_001355"
     CDS             6058..7167
                     /gene="mobA"
                     /locus_tag="PXE92_001355"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL5760606.1"
                     /translation="MEEKISAVILAGGLARRMNGAEKGLQLLDQKPLISHLLARLSPQ
                     IEDIWLNINRSVEQYQQLYPELPYYQDSLPDFQGPLSGMLSGFEQIESDYLLFVPCDT
                     PFIPTQLLHKLHTALRINQAQIAYAHDGDRPHPTVALVHRSVAENLRAYLASGERRLL
                     WFFQTQKSVAVDFSAYKAAFRNFNCLEDLTAFNPYPIKTLAITGYSGTGKTTLLEKLI
                     PKLTACGIRVGLIKHSHHNVDIDKKGKDSYRLREAGANPTMVVCDERWALMTETKQAA
                     ETKQAVEFSQLIAKFDPETVDLVLVEGFKHETMPKIQLHRKEIEKPLPALDQWTIATA
                     TDYPLERENRLDINDVEQLADFIRQWLEASKEPAN"
     gene            complement(7222..11733)
                     /locus_tag="PXE92_001356"
     CDS             complement(7222..11733)
                     /locus_tag="PXE92_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5760607.1"
                     /translation="MINKNFPLSYLASFVAFAVSLSATASVFRDDIDLQYYRDFAENK
                     GKFTVGASNIEIKDKSGNTLDALFPNVPMPDFSAANRNLGIATLVAPQYLVSVAHNTQ
                     YNTVEFGAPGTNADAHHYTYKVVDRNDYGIVEGGQHQDYQVPRLNKLVTEVAPATVTD
                     LGNNASAYQDSSRFTHFARLGSGRQIVKNTEHKDNQISTSYQYLTGGVHLPIAVHNSD
                     YWLDFRGNALNNSPYGALTAFGTRGDSGSGVYGYDQKTKRWLLLATYTFGTPANNYYN
                     RAGIIRQDYHDKQFAEDIAGTLTNAQQNAVFEWSAQGKDSSIGNKGKNLTVSLADRSI
                     KDNSASPLGYGGTPQLQLPQDNTGKTLNIEGQDSTIVLKTDIDQGAGALNFNANATVR
                     PENDQSWVGAGIVVAKGKQVNWQVKNPQGDRLSKLGEGTLHINGKGENLGDISVGQGT
                     VILTQQAGENGKKSAFNQVGIVSGRSTVVLNSADQVDPNKIYFGFRGGRLDLNGNNIA
                     FNRIQNSDDGARIVNNHLQKAATLTINGPKPPEATDLKWGTWKENSADIYEYINPHAN
                     NRTDYFTLKGNPNQYMPTNGASNAHWTFLSSNKDAAVKQVLAQKGLEHRYNSFNGFIG
                     ETDNTQHNGRLNVVYDPKASTPPATASEVTWGKGLVAGADIYLFTNPKTKIREYFALK
                     GDPKQPVPRGGLSSEHWEFLAADRNQAINKVLARKNAPIEQEKLNSIYTFSGGLNLNG
                     DLTVKGGKVLLSGRPTPHAYDAINKQDVVYADDWQNRQFKADNMQLNQYAQLYVGRNV
                     SNLQANLSANDHAQLHLGFINEQTPSCYYSEYTGKTSCDTQAVVSNEIFATLPTTQIN
                     GDVSLAEQSQLHIGKANLIGTIQAAATTSIRLANQASWTNTGDSRTGNLVAENGSTIN
                     LNEKFVTGEIPTRFNTLIIDGNFQGNAKINYLTDIAAGKGDHLQVNGLAEGTFTLALR
                     NSGKEAEVVSPLSLLTLTHQAQADKAKVSLENGYVDLGAYRYVLANRSNGYRLYNPLK
                     DAKDRNQSIATAKAELDHAIAEADKQKQEISRLNAEAEKERQAEKNAKQAAANAQSQL
                     SQANSELTRLQQYADYYRRYYPTYYRQIQGQITVAKQKVTQASAALTTAENNAKASAA
                     QIANVEQAVETAQNIAKQVEAKLATLRITAGNSEAILNAEALKLCQENGANCEHLQAH
                     ADTDSSNIQQSDWVSQYANTALSELSAQANSALQIGQDLDRQLFAKHDKFHVWSSIEH
                     QKTEHQSDLYRPYEQQTNLTQLGIELPLANGINAGVMLSRNHANAEFDEGVNGKSNLL
                     MASLYGKWHSENGTFVSLDGSYGKAKNRIDLFGENRFNRHIMAIGANLGHNFDLAGVQ
                     VQPAVGTRYYRFSAQNYKLGEVEVRSPKAHFMAYQAGVKVSKAFDLSSWKVEPSLAAH
                     YVDASSKRLSVAVNDNTFSQRFGRYLKTEVGVGVTKGQWQLSSHLGLLKGNEIGKQHF
                     AGFKLGYSW"
     gene            complement(11917..12921)
                     /gene="fbp"
                     /locus_tag="PXE92_001357"
     CDS             complement(11917..12921)
                     /gene="fbp"
                     /locus_tag="PXE92_001357"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HDL5760608.1"
                     /translation="MKTLGEFIIEKQAEYPGAKGELSGILSSIRLAAKIIHREINRAG
                     LSQDILGTAGSENVQGEAQMKLDVFANETMKKALLAREDVAGFASEEDDNFVAFDNER
                     GRNAKYILMTDPLDGSSNIEVNVSVGTIFSIYRRVSPIGTPVTQEDFLQEGRKQVAAG
                     YVTYGSSTMLVYTTGNGVNGFTYDPSLGLFILSHPDLKTPTEGKYYSINEGQYVTFPQ
                     GVKRFIKYCQETDEAIKRPYSSRYIGSLVSDFHRNLLKGGIYIYPTSTVYPKGKLRLL
                     YECNPIAFLAEQAGGMATDGINPILDIKPTELHQRVPFFVGSTSMVKQAGEFMQEFAK
                     "
     gene            13045..13836
                     /locus_tag="PXE92_001358"
     CDS             13045..13836
                     /locus_tag="PXE92_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL5760609.1"
                     /translation="MNNLRIKMISPEIALAKYNELDVLEINHSKVKAKIALQGAQLLS
                     WQPKNTQQDVLWLSEIEPFQTGVAIRGGIPICHPWFGTDKKPAHGTARIQAWNLLEHT
                     SSADGIRVVLGLENQAKLEMILGEVCELYFTHLAPEPAQAALHTYFQVGDITKTEVQG
                     LATQCFDKLTNQEIEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETV
                     LWNPWHNTVSAMTETAYQNMVCVETARINTLLQQNETLGVRILVR"
     gene            complement(13904..14593)
                     /locus_tag="PXE92_001359"
     CDS             complement(13904..14593)
                     /locus_tag="PXE92_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HDL5760610.1"
                     /translation="MLQLRKANERGDGSFSWLKSYHTFSFANYYDLKHIHFSHLRVIN
                     EDFIAPNHGFGKHPHDNMEILTYMLKGRVAHEDSMGNKTEVKAGEFQIMSAGTGVFHS
                     EINPDPNETLHLYQIWIIPNQKDVTPRYNQDRFAPKEGATLILSPNAEEGSFKIYQDM
                     KLWRYQYPTAKSEQLALEPNRSYWLQVVKGNLNINGVELSTSDALGIRQEKALEINTQ
                     DDVEFLLFDLV"
     gene            14786..>15409
                     /locus_tag="PXE92_001360"
     CDS             14786..>15409
                     /locus_tag="PXE92_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HDL5760611.1"
                     /translation="MNFTTYFSDENKRRSLILLSLFHIFIIAISNYLVQISFEVQVPL
                     TEFSFPTTWGTLTFPFIFLATDLTVRVFGADLARKIIFVVMFPALVISYVISVLFFET
                     QFQGFSALTEFNFFVFRIALASFAAYLVGQLLDVLVFNSLRQGKRWWLAPTCSTIFGT
                     LIDTFVFFAIAFYKSSDEYMAEHWFTIGSVDYAFKLFVSLLLFLPLYG"
BASE COUNT         4140 a         3129 c         3385 g         4755 t
ORIGIN      
        1 ctatattttt ctactttaca ttcaacctga aattgggcat attccgcact taaagtgtga
       61 ttaatttaca tttaactcaa ttctttttta tataaaactt tatcagtttg aggtatttac
      121 cgtgtctaat caatcatcaa acgcaccgca aagagaaacg ttctccggac gtggtgcatt
      181 tattatggcg gctattggtt ccgctgtcgg cttagggaac atctggcgtt tcccttatac
      241 tacttatgaa aacggcggtg gggcttttat tctgccgtat atcattgccc ttttgaccgc
      301 aggtttaccg ctgctgttct tagattattc tatcgggcat aaatatcgtg gtggtgcacc
      361 gctcgctttc cgccgtttca gctcgaaatt tgaaaccttc ggttggtggc aagtgctgat
      421 caacgtgatc atcgggattt attatgcggt ggtactcggc tgggcagcaa gttacaccta
      481 cttctcattc agcggagcgt ggggcgataa accggtggat ttctttatcg gtgaattctt
      541 aaaaatgggc gatattactc aaggcgtgag ctttgaattt gtcggtatgg ttacagggcc
      601 gttaattgcg gtatggctga ttgctattgc tgtgttggct atggggatca aaaaagggat
      661 ttctgctgcc tcaaacctgc taatgccgca gttgatcgtg atgttcttag tgttggtcgg
      721 ctattcatta accctaccgg gtgctgcgaa aggcttagat gcgttattta ccccaaactg
      781 ggaaaaattg gctgatccaa gtgtgtggat tgccgcttac ggtcaaatct tcttctcact
      841 ctctatctgc ttcgggatta tgattaccta tgcttcatac ctgaaaaaag aaaccgattt
      901 aaccggttca ggcttagtgg tgggttttgc gaacagtggt tttgaattat tagcgggtat
      961 tggcgtattt gcggcactcg gctttatggc aacggctgca gggcaagaag tgaacgaggt
     1021 agcaaaaggc ggtatcggct tggcattctt cgctttccca accattatta accaagcacc
     1081 aatgggggca ttagttggcg tgctgttctt tggttcactc acctttgcgg cattaacctc
     1141 atttatctcg gtaattgaag tgattatttc agcggtgcaa gacaaactca attcaggtcg
     1201 tgtgaaagcc acgctactag tcggcattcc gatgatggtg gtatctgtct tgctattcgg
     1261 tacaaccacc ggtttaccaa tgcttgatgt gatggataaa ttcgtaaacc aattcggtat
     1321 tgttgcggtg gcgtttgttt ccttgattgc gattgtcacc agcgagaaat taagcaccct
     1381 tgaaaaacac ctgaacgaag tttcttcatt caaagtcggc tttatctggc gtttatgtat
     1441 cgttattacc tccggcgtac tggcatttat gttattcagc gaaatcgcca aagtgtatcg
     1501 tgaaggttat gaaggctacc caagctggtt tgtaaacacc ttcggctggg gaatggcaat
     1561 cggcttagtg gtggtggctt atttgctatc aaaaatggcg tggaaaaatg aaccaaaagg
     1621 agatgagtaa tgagttcagc agcaattatt accatggtgg tggcaatgac gattatctgg
     1681 ggcggtttac tttttgcgat taaacgtctg ccgaaagaag aacaataatt tgcaaatttt
     1741 tgtataaaaa agcccgcttg ttagcgggct tttggctata cggtaatccc aaatttctct
     1801 tccacaaagg cttggaaatc ggtgcaaccg ccaacgtggt tattatccac aaaaatttgt
     1861 ggtacagttg caaccggctt gccaacacga ggctctaggt cttgttttga aatattttca
     1921 gcgatcatat caataaattt aaaatcaaaa tcgcttaatt cttgtttcat tttctcggct
     1981 aatgtttttg cacgcacgca gtatgggcaa gataaacgtc cataaatttc aacaaacata
     2041 taatgttcct tctataaagt aaaagtgagc gaattgtccg ttaaacggct ctgtgtaagt
     2101 gtaacaattt tttcaacctt ttaggataaa tttcttcacc atcacggcaa gcagttaatg
     2161 tgatatactg gggcaaattt acaagtagag aaacagagat gacccaatta atgacgtttg
     2221 aggagcttga tttaagccct caattactta aagccttagc acacaaaggc tataaccgcc
     2281 caaccgctat tcaacaagcc acgattccgg ctgcgttaga aggacgtgat ctgctcggtt
     2341 cagcccctac cggtaccggc aaaaccgccg cttttttact gccggcaatt cagcatttat
     2401 tagattatcc tcgccgcaaa ccaggggctc ctcgcatttt aattcttacc ccaacccgag
     2461 agctggcaat gcaggtggcg gagcaagccc aagcactggc taaatttact cagttgagca
     2521 ttgcgactat taccggtggg gtggcgtatc aaaatcacgg tgaagtcttt aataaaaatc
     2581 aagatattgt ggttgctacc ccgggtcgtt taatgcaata cattaaagag gaaaattttg
     2641 actgccgagc ggtggaagtg ctgatttttg atgaagcaga tagaatgttg caaatgggct
     2701 tcgggcaaga tgcggagaaa attgcggcag aaacccgttg gcgtaagcat acttggttgt
     2761 tttcagcgac cctcgagggc gagttattag aggattttgc cgagcgatta ttaaatgatc
     2821 cgattaaagt cgatgccgaa ccaagtcgcc gtgagcgtaa aaaaattcag caatggtatt
     2881 accacgccga taatgtagag cataaaacca aattattagc tcgtattatc agcgaatttt
     2941 cggtggaaag agcgattgtg tttgtccgcc gccgagaaga tgtgcgagaa ctcagcgaaa
     3001 ccttgcgtaa gcggggaatt cgttctactt atctcgaagg tgaaatggct cagacccaac
     3061 gtaaccaagc tattaaccgt ttaaaagaag gcgtagtgaa tgtgttagtg gcaaccgatg
     3121 tggcggctcg aggcattgat atagacgata ttgatttcgt gctgaactac gatttacctt
     3181 atagtgcgga tacttacttg caccgtattg ggcgtaccgc tcgtgctggc aaaaaaggtt
     3241 cggcaatttc attggtggaa gctcacgatt ataaattact cggcaaaatt aaacgttaca
     3301 ccgaagaagt actaaaacct cgcattatcg agggcttaga gcctcgcacc aaagccccga
     3361 aagatggcga gctaaatgtg accagcaaga aagaaaaagc acgcattaag aagaaaaaag
     3421 aggcgaaaaa agaagcggca aaaccaaaag taaaagtccg ccacaaagat accaaaaata
     3481 tcggtaaacg gcgtaaacca agtagtgaat cggctgcggt taaacaggca taatgataca
     3541 agcggttatt ttctgaagat tttttgcaaa aatttcatca aaaataaccg cttgtttata
     3601 tctaccttac tgccatttgg aacagaatca cttctgcttg gcagctgaaa gtgatccaca
     3661 ttttcatcag aaacccttct gcaatttgtg taatttcgct ttgaatttca caaggttcgg
     3721 tttcgaccga ttttgctttt tgtgcgaaaa attcgaccgc ttgttgagcc agttcttcgc
     3781 tctcatacac cgcttcaaag gcaatttggc ggtctgcatt atccaacata gaatcgcctt
     3841 ttagccggca catattatgt gcctcagccg ctttttgttg catcgttttg ctcatattac
     3901 accttatccg taatttgttt taaccaagtg taggattgat gctgtttttg ctcatcgaaa
     3961 atgtagttta ccgccataat ttcatcaatt tccactcgtg cttttagggc tttaagttgt
     4021 tgttcaacgc tttgcgggct accaattaag gagcattcgg tcatttggcg gacaacggtt
     4081 ttctcttgtc ggtatagagc attttgctca aaggcaaccg gcccgaaatg cggcacaatt
     4141 tctgctttca caaaattttc ccacactttg tcgtcagatt cgagcggtgg ttgcagattt
     4201 tgttgggcat tggtcactac atttaagaaa aactgggttt gggtggtcgc cagttgtgtt
     4261 gcttcttcat cggtttctgc cacaatggca ttcacaccta aaatcacata aggtttatct
     4321 aacacatcag agggcttaaa atgtgagcgg taaatgcgga ttgcatcgtc cataaagcga
     4381 ggggcaaagt gtgaagcgaa ggcgtaaggc aagcctcgtt cagccgctaa ataggcactt
     4441 tcagggcttg agcctagaat ataaaacggc acatttagcc cttgtgccgg ataggcggaa
     4501 acagggtttg taccgtcaaa gtagcctttt aattcgctga tttcatcggg gaaaggcaaa
     4561 ctctgggcgt aaggcagagg cggttcgcat atcggtgccg ggggctcgcc caagccccag
     4621 ttctactcgg tttgggtaga gtgtttcaag cgtgccgtat tgttctgcca caatataagg
     4681 gctgtggttg ggtaacatca cgccaccgga gccgactctt aatttttcgg tgtgggagag
     4741 ggcgtgttga atcaataatt gcgtggcgga actggcaaga tttttcatat tatggtgttc
     4801 ggcaatccaa tagcgttcaa tgccgatatt ttctgcgtgt tttgctaatt tcaccataga
     4861 atcgaccgct tgtttggcag tttgcccttc acgaatcggc acaaggttga gaatggataa
     4921 gtttgtcatt ttgttctccg agtttgcata taaaaaaggc tgaatagctt tactattcag
     4981 cacttgtaaa accatctcct taatatgggg acgattattt cttactcaag aagaccacag
     5041 cgtcaatata gcgttggata aaatcattgg tcgagcttga atcggaaaat ccttctagat
     5101 taagctggta ttgaccattc acgaaaaacg ccggtacacc acgaatttgg aagtcttcag
     5161 ctaattgaac ttgtttattg actaaaccgt ttactgcaaa gctgttgata ccgctgtcaa
     5221 actgttctgc actaatgctg ttagcgatga agaccgcacg aatatcgtcc attgatttaa
     5281 acgcatcttt ttgagcggct tcaaacaagg cggtttttac tttatcttcc gctcctaatg
     5341 ccattgccaa tgcccaagca cgggttaagt tttcagattg gcgacctaag aaattgacgt
     5401 gatattgcac taatttgctg tctgcaggca atttcgcttt gatttggctt ggaattttgt
     5461 aatttagctc aaaatcgtaa cagtgggggc agtagaatga gaaaaattcc accacttctt
     5521 tttgagccga tggggcttta cgcacctcaa tatactcttt gccggcagtt ggatctgctg
     5581 caactgcggt tgcgttaaat gcaaaaaggg cagaaagagc aaccagtacg gtttttaatg
     5641 caaatttttt cataatgatt ccttcaaaaa tatgataagt gagaaataag acaaacttaa
     5701 tcgtttaaaa ttccacgagc tcggagcaat gcggttttaa aatcatcttc ataatctttt
     5761 ttaatgcccg gaatcggctc aaatttatcg gcgtttcgca ttttgagctg ataaatcaaa
     5821 acctcgtcac gcagggcatg aaaattatcc ggctcgctta cttccaccga aagctgttgc
     5881 agaatatcaa ttaagtgaag atcggggttt ttccgccaat gttcgccaag cagttccaat
     5941 agctcttcta aacgtttgca tttcatagta tgcctcttaa aaaacttgtt gaatagtaag
     6001 cggaataata tacttttagc cctcatttgg caaaaaaatt caggtttgga gagggaaatg
     6061 gaagagaaaa tttcagcggt aattttagcc ggaggtttgg ctcggcgaat gaatggagcg
     6121 gaaaaagggt tgcaactgtt agatcaaaaa ccgttgattt cgcacctgtt agcccgactt
     6181 tcgccacaaa tcgaggatat ttggctcaat atcaatcgtt cggtggaaca atatcaacaa
     6241 ctttaccctg aattacctta ttaccaagac agcttgcccg attttcaagg cccactaagt
     6301 ggaatgcttt ccgggttcga gcagattgag agcgactatt tactgtttgt gccttgtgac
     6361 acgccgttta ttccaaccca actattgcac aagttacaca cggcattacg cattaatcag
     6421 gctcaaattg cctatgctca cgatggcgac cgcccacacc caacggttgc cttggtgcat
     6481 cgttcggtgg cggaaaattt aagagcgtat ttagcctccg gcgaacgccg attattgtgg
     6541 ttttttcaaa cccaaaaaag tgtggcagtg gatttctcgg catataaagc cgcatttcgc
     6601 aattttaatt gtttagaaga tttaacggct ttcaatccat atcccatcaa aaccctggcg
     6661 attactggct atagcggcac aggcaaaacc accttattgg aaaaattaat cccaaaattg
     6721 accgcttgcg gtattcgggt tggcttgatt aagcattccc accacaatgt tgatattgat
     6781 aaaaaaggaa aagacagcta tcgcttgcga gaagcaggag caaacccgac tatggtcgtg
     6841 tgtgatgaac gttgggcatt aatgacggaa actaagcagg cagcagaaac taaacaagcg
     6901 gtcgaatttt cacaattaat tgcaaaattt gacccagaga cggtagattt agttttagtg
     6961 gaaggcttta agcacgaaac aatgccgaaa attcaactac accgtaaaga aattgaaaaa
     7021 ccgttgccgg cgttagacca gtggacaatc gcgaccgcaa ccgattatcc gcttgagcgg
     7081 gaaaatcggt tggatattaa tgatgttgaa cagcttgctg attttattcg gcagtggcta
     7141 gaggcaagca aagagccggc taattaattg actaaaaagc ccctaaagta agcgattgct
     7201 tagtttaggg gctaatagca attaccagct atatcccagt ttgaagccgg caaaatgttg
     7261 tttgccgatt tcgttacctt tcaatagacc aaggtgagag cttaattgcc attgaccttt
     7321 tgtaacaccc acgcccactt cagttttcag ataacgtccg aaacgttggc taaaggtatt
     7381 gtcattgact gccacactca agcgtttgct gctggcatcg acataatgtg cggcaaggct
     7441 aggctcaact ttccagctgg agaggtcaaa ggccttgctg actttcacac ctgcttggta
     7501 ggccataaag tgtgctttcg ggctgcggac ttctacttca cccagtttgt aattttgtgc
     7561 gctgaagcga tagtaacgtg taccaacagc aggctgaact tgtacgccgg ctaagtcgaa
     7621 gttatgtcca agatttgccc caatcgccat aatatgacgg ttaaagcggt tctccccgaa
     7681 caggtcgata cggtttttcg ctttaccgta gctaccgtct aggctgacga aagtgccgtt
     7741 ttccgaatgc catttaccat ataggcttgc catcagtaag ttggatttac cgttcactcc
     7801 ctcatcaaat tccgcattag cgtggttgcg ggatagcatc acaccggcat tgataccgtt
     7861 tgcaagcggt aattctatgc ctaactgagt gaggttggtt tgttgctcat acgggcgata
     7921 taaatccgat tggtgttcgg ttttttgatg ttcgatactg ctccaaacgt ggaatttatc
     7981 gtgttttgcg aacagttggc gatctaagtc ttgcccgatt tgcaacgcag aatttgcctg
     8041 tgccgatagc tcggaaagag cggtattggc atattggctt acccagtcgc tttgttgaat
     8101 attactactg tcagtgtctg cgtgtgcttg tagatgctca caatttgcac cattctcttg
     8161 gcaaagtttt agtgcctcag cgtttaaaat tgcttcacta tttccagcag ttatacgtaa
     8221 ggtagctaat tttgcttcta cttgttttgc aatattttgt gcagtttcaa ccgcttgttc
     8281 tacgttagca atttgcgcag cggatgcttt agcattgttt tctgctgtag tgagtgcagc
     8341 actcgcttgt gtgactttct gttttgctac cgtaatttgc ccttggattt ggcggtaata
     8401 cgttggatag taacggcggt agtaatcagc atattgttgc aaacgggtta attcgctatt
     8461 tgcttggcta agctgagatt gtgcgtttgc agcggcttgt ttagcatttt tctctgcttg
     8521 gcgctctttc tcggcttctg cgttcaaacg gctgatttcc tgtttttgtt tatccgcttc
     8581 tgcaatagca tggtctaatt ccgctttcgc cgttgcaatc gactgattcc gatctttagc
     8641 atcttttaac ggattgtata agcgatagcc gttgcttcga tttgccagca cataacgata
     8701 tgcacctaaa tcaacataac cgttttccag tgaaacttta gctttatcag cctgagcctg
     8761 atgggttaag gttaataaac ttaacgggct aaccacttca gcttctttgc cactgttgcg
     8821 taatgcaaga gtgaaagtcc cctcggcgag accatttact tgtaggtgat cgcctttgcc
     8881 agcagcaata tcggttaagt agttgatttt ggcattacct tggaaattac cgtcaataat
     8941 caacgtatta aaacgagtcg gtatctcgcc tgttacaaat ttttcattca ggttgatggt
     9001 tgaaccgttt tctgccacta aattgccagt acggctatcc ccagtgtttg tccagcttgc
     9061 ttggttagct aaacgaatgc tcgttgttgc tgctgcttga atggtgccaa tcaggttcgc
     9121 tttgccgatg tgtaattggc tctgttctgc caagctgaca tcaccattaa tttgtgttgt
     9181 gggcagtgtt gcaaaaattt cattagaaac gaccgcttgt gtatcacagc ttgttttacc
     9241 agtgtactca gaatagtagc aacttggagt ttgctcgttg ataaagccta aatgtagctg
     9301 agcatggtca ttcgctgaca agtttgcttg caggtttgag acattacgac caacataaag
     9361 ctgagcgtat tggtttagct gcatattatc agccttaaat tgacgatttt gccaatcatc
     9421 ggcataaact acatcttgct tattgatcgc atcataagcg tgaggggtcg gtctgccgga
     9481 aagtagcact ttacctcctt tcacagttag atcgccgttt aagttcaaac caccagagaa
     9541 ggtataaata ctattgagct tttcttgctc tattggtgcg tttttacggg ctaatacttt
     9601 gttgatcgct tgattgcgat ctgcagctaa aaattcccaa tgctcgctgc ttaagccacc
     9661 gcgaggaaca ggttgttttg gatcaccttt taatgcaaag tattcccgaa ttttcgtttt
     9721 cggattggtg aacagataaa tatctgcacc agctactagc cccttacccc aagttacttc
     9781 agaggcagtt gccggtggtg tagaggcttt tggatcatac accacattca aacgaccgtt
     9841 atgctgggtg ttatctgttt cgccaataaa accattaaag ctattgtagc gatgctccag
     9901 acctttttgc gcgagtactt gttttactgc tgcatccttg ttagaagaca ggaaggtcca
     9961 atgggcatta cttgcgccat tcgttggcat atattggttt ggattgcctt tgagcgtaaa
    10021 gtaatcggta cggttattag catgtgggtt gatatattca taaatatcag cactgttttc
    10081 tttccacgtt ccccatttta agtccgttgc ttcagggggc ttcgggccat taatggtgag
    10141 tgttgcagct ttttgtaggt gattattaac aatacgcgca ccatcatcac tattttgaat
    10201 acgattaaac gcaatgttgt tgccgttgag atctaaacga ccaccacgga agccaaagta
    10261 aatcttattt ggatcgactt gatcagcact gtttaataca acggttgaac ggccgctcac
    10321 aataccaact tggttaaatg cagatttttt gccattttca cccgcttgtt gggtcaaaat
    10381 gacagtgcct tgtccaacac taatgtcacc aaggttttcg cctttaccgt taatatgtag
    10441 tgtcccttcg cccaatttag ataaacggtc accttgtggg tttttgactt gccaattaac
    10501 ttgtttacct tttgccacta caattccagc tcctacccag ctttgatcat tttcagggcg
    10561 aactgttgca ttagcattga aatttaatgc gccagcacct tggtcaatat cggtttttaa
    10621 tacgatagtg ctatcttgtc cttcaatgtt tagggttttt ccggtgttat cttgcggaag
    10681 ttgtagctga ggtgtgccac catagcctaa tggagaagcg ctattgtctt taattgaacg
    10741 atcagcaagc gaaaccgtta agtttttccc tttattacca atgctactgt ctttaccctg
    10801 tgcagaccat tcaaaaacgg cattttgttg cgcattggtt aatgtgccgg caatatcttc
    10861 ggcaaattgt ttatcgtgat aatcctgacg gataataccg gcacggttgt agtagttgtt
    10921 tgcaggcgta ccaaaggtgt aagtagccag tagtagccag cgtttcgttt tctgatcgta
    10981 gccatacaca cctgaaccgc tatcaccacg agtaccaaat gcagttaatg ctccatatgg
    11041 gctattgttt aatgcatttc ctctaaaatc tagccagtaa tcggaattat gtaccgcgat
    11101 tggtaaatga actcccccgg ttaaatattg gtaagatgtt gaaatttggt tgtctttatg
    11161 ctcggtattt ttgactattt gacgaccaga gcctaagcga gcaaagtgag taaaacgact
    11221 actatcttgg taggctgaag cattattacc cagatcagtc actgttgcag gtgcgacctc
    11281 agtgactaat ttattgagac gtggcacttg ataatcttga tgttgcccac cttcaacaat
    11341 tccatagtcg ttacgatcaa cgactttgta agtgtagtgg tgtgcatcgg cattagtgcc
    11401 tggggcgcca aattccacag tattgtattg tgtattatgg gcaacgctga ctaaatattg
    11461 cggtgcaact agagttgcta tccctaagtt acggtttgca gcactaaaat ctggcatcgg
    11521 tacatttggg aagagtgcat ctaatgtatt gccactttta tctttaattt caatattgct
    11581 tgcacctacg gtgaatttac ccttattctc cgcaaaatca cggtagtatt gaagatcgat
    11641 atcatctctg aaaacagagg ctgttgcaga taaactaaca gcaaatgcca caaagctggc
    11701 aaggtaagaa agtggaaagt ttttatttat cataaaatgt taataaattg ctaatattaa
    11761 tggagtaaaa aggtggggta ttctatagat aattatttat ttggcaagag gtcttacctg
    11821 ttttttatac aaatttacaa tcttaagata ggcaaaagca gctacggaat acgcagctgc
    11881 tttgttgaaa gttttattga gtgataagca ggagcattat tttgcaaatt cttgcataaa
    11941 ttcgcccgct tgtttgacca ttgaggttga accgacaaag aacggtacac gctggtgtag
    12001 ctctgttggc ttaatatcta aaatcggatt aataccatct gtcgccattc ctccggcttg
    12061 ttcggcaaga aacgcaatcg ggttgcattc atagagtaaa cgcaatttcc cttttggata
    12121 tacggtggag gttgggtaaa tataaatacc gccttttaat aaattgcggt ggaaatcgga
    12181 caccagcgag ccgatatagc gtgaagagta tggacgtttg atggcttcat cggtttcttg
    12241 gcaatactta ataaagcgtt tcacaccttg tgggaaagta acatactgcc cttcattgat
    12301 ggagtaatat tttccttcgg taggggtttt tagatcaggg tgtgaaagaa taaataagcc
    12361 taatgacgga tcataggtaa aaccgttcac gccattgcct gtggtgtaaa ccagcatggt
    12421 tgaagaacca taagtaacat aaccggcggc aacttgttta cgcccttcct gcaagaaatc
    12481 ttcttgtgtt actggggtgc cgatagggga gacacggcgg taaatagaga agattgttcc
    12541 cacagaaaca ttcacttcaa tattggagga gccatcaagc ggatcggtca ttaaaatata
    12601 ttttgcattt ctcccacgct cattatcaaa ggcaacaaaa ttatcatctt cttccgatgc
    12661 aaagccggca acatcttcac gtgcaagtaa cgcttttttc atcgtttcgt tggcgaatac
    12721 atcaagtttc atttgggctt caccctgtac attttcagaa cctgcagtac ctaaaatatc
    12781 ttgacttaaa ccggcacggt tgatttctcg atgaataatt ttagcggcta aacgaataga
    12841 agataaaatc ccacttaatt ccccttttgc ccctgggtat tctgcttgtt tttcaataat
    12901 aaattcgccg agtgttttca tttttttctc cttcgctatg ttagaatgcc cttattataa
    12961 cgattacctt taaagaggta gcggtttaag ctttaattct gtgatccact tcacatttta
    13021 tctttcaaga tgaggagcaa tacgatgaat aatctacgaa tcaaaatgat cagccctgaa
    13081 atagcattag caaaatataa tgaattggat gttttagaga ttaatcactc caaagtgaag
    13141 gctaaaattg cattgcaagg tgcgcagtta ctgagttggc aacctaaaaa tactcagcaa
    13201 gatgtattat ggttaagtga aattgaacct ttccaaacag gtgtggcgat tcgtggcggc
    13261 attccgattt gccacccttg gtttggtaca gacaaaaagc ctgctcacgg cacagcccgt
    13321 attcaagcgt ggaatttgct ggaacatact tcctcagcag atgggattcg tgttgttttg
    13381 gggttagaaa atcaggcaaa actcgagatg atactaggcg aagtctgtga gttgtatttt
    13441 actcacttag caccggagcc ggcacaggct gcattgcata cttattttca ggtcggtgat
    13501 attacgaaaa cggaagtaca aggcttagca acacaatgtt ttgataaatt gacaaatcaa
    13561 gaaattgaag tgccatcacc tcgcaagata agtgaaaatg tggattgtat ttatccggca
    13621 caagcggtga attttattca agattttgca aatcagcgca ccattaaagt tgagcatatt
    13681 aatgctaccg aaaccgtact ttggaatcct tggcataata ccgttagtgc gatgacagaa
    13741 acggcgtatc aaaatatggt atgtgtggaa acagcacgga taaatacctt acttcaacaa
    13801 aatgaaacgc taggagtgag aattttggtg cgataatgtt taatgagagc aagcagctga
    13861 attagtaata ttttttacaa atttaaccgc ttgtctcttg tatttacact agatcaaaca
    13921 gtaaaaattc cacgtcatct tgagtgttta tttcaagtgc tttctcttga cgaatgccta
    13981 aggcatcgct ggtggaaagt tcaacgccat tgatgtttag attccctttc accacttgta
    14041 gccagtaact gcggtttggc tctaatgcca gttgctctga tttggctgtt gggtattgat
    14101 aacgccacag cttcatatct tggtaaattt taaatgaacc ttcttctgcg tttggcgaaa
    14161 gaatcaaggt tgctccctct ttcggggcaa atctatcttg gttgtagcga ggggtcacat
    14221 ctttttggtt tgggataatc caaatctggt aaaggtgtaa ggtttcattc ggatctggat
    14281 taatttctga atggaaaacc ccggttccgg cagacataat ttgaaattcg ccagctttta
    14341 cttcggtttt attacccata ctgtcttcgt gagccacacg tccttttaac atataagtta
    14401 aaatttccat attatcgtgc gggtgcttgc caaaaccgtg attaggtgca atgaaatctt
    14461 cgttaattac ccgtaaatgt gaaaaatgga tatgttttag gtcgtaataa ttggcaaagg
    14521 aaaaagtgtg gtagctttta agccagctaa aagaaccatc gcctcgttca ttggcttttc
    14581 tcagttgtaa cattatctat tccttatgta agtgttaagt tgtgccattt tactttatgt
    14641 caaaaataga taaaccctaa tttaatagat taattgtttc attttttgaa ataatatgag
    14701 cttgattttt atgggaaaat gtatagaata atgccccctt gagttccctt acctcaagtt
    14761 ttcatttaac gaaaaaggat acaatatgaa ctttactact tatttttcgg atgagaacaa
    14821 acgtcgttct ctaattttac tttcactttt ccatattttt atcatcgcaa ttagcaacta
    14881 tttagtgcaa attagctttg aagttcaagt accactaaca gaatttagct ttccgacaac
    14941 ttggggaacg ttaacattcc catttatttt cttagcgacc gatttaaccg tgcgtgtatt
    15001 tggtgcagat cttgctagaa aaattatttt tgttgtgatg tttccggcac ttgtcataag
    15061 ctatgtgatt tccgttttat tctttgaaac ccaatttcaa ggctttagtg cattaactga
    15121 gttcaacttt tttgttttcc gtattgcact ggctagcttt gcagcttatt tagttgggca
    15181 attattagac gttctagtat ttaatagttt aagacaaggt aagcgttggt ggcttgctcc
    15241 aacctgttca accatttttg gtactttaat cgatactttt gtattctttg ctatcgcctt
    15301 ttataaaagt agcgatgaat atatggcaga gcattggttt actattggtt cggtcgatta
    15361 tgcgtttaaa ctctttgtga gcctactgct atttctaccg ctttatggt
//
LOCUS       DANMBQ010000054        15265 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.054, whole genome shotgun sequence.
ACCESSION   DANMBQ010000054 DANMBQ010000000
VERSION     DANMBQ010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15265
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.054"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            1..849
                     /locus_tag="PXE92_001361"
     CDS             1..849
                     /locus_tag="PXE92_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL5760612.1"
                     /translation="MEKKALFRGFLLSTVALAVAACGNLSKVSDEGTTENPVFPKISE
                     SEFNHDGSQFGSWPNWENVRQIEKGMNKDQLYNLIGRPHFEEGLYGVREWDYAFNYRE
                     NGVHKICQFKILFDKNMNAQSFFWYPNGCNGNSSFALTGDFLFDFDKATLTTKGKEVV
                     DNVAQQLKASKAQQVKVAGYTDRLGSAAYNLDLSQRRSNTVKARLVQQGVTAQIEAVG
                     YGKANQVKACDGETGQALKDCLRPNRRVEISANCGVMKQNEGGNVAGPNGPAPLYQTP
                     AYDGSK"
     gene            937..1755
                     /locus_tag="PXE92_001362"
     CDS             937..1755
                     /locus_tag="PXE92_001362"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphatase"
                     /protein_id="HDL5760613.1"
                     /translation="MNYQAIAFDLDGTLLSSNATILESSKEAIKKVREKGIKVYFVTG
                     RHHTAVRPYYVELGLDTPVVCCNGTYVYDFKNEKVLSGNPLSAEIASKLVNDAQAQGI
                     HTAVYFEDAMTYESLNIHFTKFQKWVESCAPEVRPNVYQVENFQQEIDKGVTVWKVLI
                     SDPDLAKMQKFVEKLPPDQVSPEWSWVDRVDITSVGNSKGARLAEVLKTEGIDLQKVI
                     AFGDNFNDVSMLETVGLGIAMGNSEPDIQQKAKKTIGSNNEDSIANELKAQFNL"
     gene            1758..3449
                     /gene="narQ"
                     /locus_tag="PXE92_001363"
     CDS             1758..3449
                     /gene="narQ"
                     /locus_tag="PXE92_001363"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HDL5760614.1"
                     /translation="MIKAKYSIARRIGLYFLIMIGFASIISGISLGIMWSNKSDASLI
                     NVSGSLRMQSYRLLSEMDSKKALLPERLLEYHRTLHATELSSLKQSVLLPDSVIESYQ
                     QLLKDWYEMQSYVAQGDKVNYASHIEDYVQRVDDFVFRLQEFAELKLKIATGVIAIAM
                     LLIIALAYIGVWYTRKKIIGPLRQLVKASWQIQNKDFDHVKLAVNEPNELGLLSSTFT
                     EMSNELLKLYTSLEDKVQDKTRRLLAVNRSLLVLYQCSQLLTAKPINKEVLNQVLKTV
                     FDNEHLLGIDLQVYGAEYWNVSIDNKPSLDWVSAEIAIENEKLGILSWKPSLVCPGER
                     LIQNVSEMIGRSLYVVQMQKQQQQLVLMEERAIIARELHDSLAQSLTFFKIQVSLLKL
                     AKTDEKRNEILTVFEKALNDAYSQLRELLTTFRLTIQEANLQQALEKILESLRPKTSA
                     QIRLSCKLPSHMFNAQQQVHVLQIVREAVINAIKHSQATEINVIAETNDDGEHCLTIQ
                     DNGVGLAAHTQPEGHYGLTIMQERAAELKAEFSIENVESGGVKVQVLLPSMISKR"
     gene            3500..4018
                     /locus_tag="PXE92_001364"
     CDS             3500..4018
                     /locus_tag="PXE92_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL5760615.1"
                     /translation="MQFRKAVEADFETILAIYNQAIPTHQITADLELATTQNRRKWFD
                     FHLETAQYPIWVVEDEKGIAGWFSFSPFYERPAFLHTSEISIYLDRYSKGKGYGSKII
                     EFMQAEMLNHNIHTLMAYVFELNTVSQNLMRKHGFEQWGRFPNIANMGKDEKGEDKWR
                     TLLMMSYQKGIE"
     gene            4061..4660
                     /gene="rdgB"
                     /locus_tag="PXE92_001365"
     CDS             4061..4660
                     /gene="rdgB"
                     /locus_tag="PXE92_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HDL5760616.1"
                     /translation="MEKTKIVLATSNADKVKEMADVLSQFGFEVVAQSEFGIESPEET
                     GLTFVENALIKARFAAKMTGLPAIADDSGLSVMALGGEPGLYSARYAGEQATDADNRQ
                     KLLAKMQGQENRLAKFVSCIVFLKHETDPTPYIASGECFGEILTEERGENGFGYDSLF
                     FYPPKACTFAELETKEKKAISHRAIALEQLKQQLAGENK"
     gene            4657..4977
                     /locus_tag="PXE92_001366"
     CDS             4657..4977
                     /locus_tag="PXE92_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HDL5760617.1"
                     /translation="MIITTTPTIEGKQIVEYKGLVFGEVVSGANFIRDFLAGITDIIG
                     GRSGAYESKLNGARKEALAELAKEAQKVGANAVVGVSMEYQSMGGDKGMFIVVATGTA
                     VVIR"
     gene            4981..5433
                     /locus_tag="PXE92_001367"
     CDS             4981..5433
                     /locus_tag="PXE92_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HDL5760618.1"
                     /translation="MQFEQHFEANFWQNKSLLEMNDAEWEALCDGCGKCCYRKYIQGR
                     GRRERLYYTSVACNLLDVNTGRCMNYSNRFKIESDCTKLTKKNLPDFGWLPKTCAYRL
                     LYEGKPLFDWHPLISKDPDSVKNAGMLIANGIHEKDVIDWFEFVIDEV"
     gene            complement(5474..6055)
                     /gene="lpcA"
                     /locus_tag="PXE92_001368"
     CDS             complement(5474..6055)
                     /gene="lpcA"
                     /locus_tag="PXE92_001368"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDL5760619.1"
                     /translation="MYLEQIKAELQEAADVLDKFMSDEKNIKLIQDAAMLIANSFKQG
                     GKVISCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFS
                     RYLEAVGQKGDVLFGLSTSGNSKNVLNAIKVAKEKGMKVIAMTGKDGGQMAGLADVEI
                     RVPHFRYADRIQEIHIKVIHILMMLIEFEMEKA"
     gene            6364..7323
                     /locus_tag="PXE92_001369"
     CDS             6364..7323
                     /locus_tag="PXE92_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HDL5760620.1"
                     /translation="MVVNPESFEQIIGQSVKIKEVVEQAKKFANLDAPLLIQGETGTG
                     KDLFAKSCHHFGSRRMQKFIAVNCAGLPAEEAESEMFGHRGNGVESVGFFEYAHGGTV
                     LLDSISELSLEMQAKLLRFLNDGSFRRVGEDQEIQVNVRVICTSLQPLSLLVEKGKVR
                     EDLFHRLNVLTLNLPPLRDRKEDIPLLADYFIAQISNQLGVSKLEYDNVFLQALQNYH
                     WRGNLRELYNALYRACTLSHSYRLAVKDLHLPRDMEAMIEVREEATLEEMMSQYEAQL
                     LHQFYAEYPSTRKLAQRLGLSHTAVANKLRQYGLTKNGNSKDE"
     gene            7316..9067
                     /locus_tag="PXE92_001370"
     CDS             7316..9067
                     /locus_tag="PXE92_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5760621.1"
                     /translation="MNKLAVIFSVCFANLGLNSTAYAAPSIPQELLENSLVYCTTSSG
                     FSFNPQKSDVSSNMNVVTEQIYDKLVEFNPKKNRLEPALAESYSISDDGLVITLRLRK
                     NVAFHTTPWFTPSRKLNAEDVVFSLKRMIGKESDLPEVKSEPESVLHHQRQSYIYQKT
                     AGQIYFPYFESVDLANKIASIHSPSNDIVKIELVRPDSALLAHLASQYAVILSKEYAL
                     QLNADDNLVQLDLLPVGTGVYQLESYENNDYVRLKPNMNYWGKKAYIQNMVVDFSTEA
                     TGRMAKFLNNECDVVAFPEPSQLSVLNNRQLISSKGANLVYLAFNMQRGIGQDLALRQ
                     RIARGINRKRIAEKLFYGTGEVADNLLPTALWSKKNNGSYPYQPHQNSGEQAVEMHDS
                     IINRSLDSKTETEEVNQKQRLKLWVIDEKRVYNQHPLKMAEMIRADLATQNLEVEIRA
                     VSRAYLVQQLANKSADYDLILGGWLANNLDPNSFLEALLSCKAAETVTNLSNWCNEDF
                     DFWLQTARLSDDPASANLLYEFAQKLLEEQLPILPLMNANRVLVIKDGVKQADISPFG
                     QVKLSELRLGLGHKKGN"
     gene            9070..10035
                     /locus_tag="PXE92_001371"
     CDS             9070..10035
                     /locus_tag="PXE92_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5760622.1"
                     /translation="MLIVFFRKIFLTLITLIFLSLISFNILLRDPLNHLAELGWFEAY
                     CYYVKSLLNGDFGISFSNGEPLTAQILQVFPATITLCLSALIVSLIIGLPLGFFAATQ
                     QKNMVGRLLNTLGSLSLAVPVFWLALVLMYYASLNQWEVSAIGEIHSLYPKQMVTGFL
                     LLDIWLSDVPYKLKMMQSALHHLALPTLVLAVPATLEVMHITQARAGYVMKQNYIKIA
                     KTRGWTPFRVWRTHIICNTLPALLPMIARTFILIFAFGMLIENIFSWGGIGRWLINAL
                     AIQDYNAISAGVVAIGVFVLLVDMVTGFVRVMLDPSDKKDWYGSY"
     gene            10022..10915
                     /locus_tag="PXE92_001372"
     CDS             10022..10915
                     /locus_tag="PXE92_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5760623.1"
                     /translation="MAVIKEPEQFRETNAFKAFWFHFRQDKLALGSFYLFLLLLALIF
                     VGSLLAPYNYNEQFVGLELMPPSWDDKGQISHFLGTDDLGRDILSRIMYGFYYTLGSA
                     LMITLLIAIIGGMIGIYAGLKKGRSFWLISHLFDTFLFMPILLIAIIIATLMEASLVN
                     AMLAIFLAMLPHFIHKIYQATEKQLKKEYIITLKLDGASCWYLIREVIIPNLTGVAIK
                     ALSHIFVIAILDISALSFIMLGAKSPTPEWGAMIRESMELIYIAPWTVILPGLAIIFS
                     IFTVTILGTRLSVIFEKYRKE"
     gene            10986..12038
                     /locus_tag="PXE92_001373"
     CDS             10986..12038
                     /locus_tag="PXE92_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5760624.1"
                     /translation="MALLDIRHLSIEIDMPKGRVKMVDNINLTVDEGEICGLVGESGS
                     GKSLIAKVICGMIKDEWIVSADRFRFDDIELLKLSPAERRKLVGDHISMVFQDPLTSL
                     DPSQQIGKQLMQTIQFRGKWWQRFGWKKKKAIELLHRVGIRDHQDIMKSYPSDITEGE
                     AQKVMIAMAVANQPRLLVADEPTNIMESTTQLQVYRLLSSMNQNLGTSILLVSNDMRS
                     IQNWVDSYNVLYCGQTVEIADKESILESSYHPYTRVLLNSSPDFSQPLAFKSSLNTLR
                     GSVPMLQEMPIGCRLGPRCPFAQKKCINKPPLVKVKQHEFACHFPINFREQNLLKNKT
                     ENTPFVVAEIAEKEAF"
     gene            complement(12047..12277)
                     /locus_tag="PXE92_001374"
     CDS             complement(12047..12277)
                     /locus_tag="PXE92_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HDL5760625.1"
                     /translation="MKLTACKLVFLLYLMFNLTACGTVLSLVEQDYRVYAGVIKDFQV
                     MQEGGIFAVLAVIDLPLSFVLDTLMLPVTLSQ"
     gene            12407..13489
                     /gene="leuB"
                     /locus_tag="PXE92_001375"
     CDS             12407..13489
                     /gene="leuB"
                     /locus_tag="PXE92_001375"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDL5760626.1"
                     /translation="MQTYNIAVLAGDGIGPEVMAEAIKVLEATQQKFGFKLNFNQYNI
                     GGAAIDAQGKALPENTLKGCEEADAILFGSVGGPKWTHLLPDEQPERGSLLPLRKHFS
                     LFCNLRPAALYQGLEKFCPLRADIAAKGFDMVVVRELTGGIYFGQPKGRDGEGAQTRA
                     FDTEVYYKYEIERITRVAFESAMKRKKHVTSVDKANVLQSSILWRETVTEVAKEFPEV
                     TLEHMYIDNATMQLIKAPESFDILLCSNIFGDIISDEAAMITGSMGMLPSASLNEQGF
                     GLYEPAGGSAPDIAGKNIANPIAQILSAAMMLRYSFNLGDAADAIETAIQKALADGYR
                     TADLADDSKPLSTSEMGDIIAKNILA"
     gene            complement(13576..13971)
                     /gene="msrB"
                     /locus_tag="PXE92_001376"
     CDS             complement(13576..13971)
                     /gene="msrB"
                     /locus_tag="PXE92_001376"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HDL5760627.1"
                     /translation="MIKPIHALTEQQVDILINHGTERPFTGKFLNEHRVGIYRCARCH
                     NDLFHSDTKFDAGCGWPSFYQTISESSLRYLDDYSLGRHRIEIRCGNCDSHMGHVFPD
                     GPPPTGLRFCLNSAALNFKWEETGEEIDG"
     gene            14196..15200
                     /gene="gap"
                     /locus_tag="PXE92_001377"
     CDS             14196..15200
                     /gene="gap"
                     /locus_tag="PXE92_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDL5760628.1"
                     /translation="MAIKIGINGFGRIGRIVFRAAQHRDDIEVVGINDLIDVDYMAYM
                     LKYDSTHGRFDGTVEVKDGQLVVNGKAIRVTAERDPANLKWNEIGVDIAVEATGLFLD
                     DETARKHITAGAKKVVLTGPSKDATPMFVNGVNFDTYAGQDIVSNASCTTNCLAPLAK
                     VIHEKFGIKEGLMTTVHATTATQKTVDGPSAKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPALNGKLTGMAFRVPTTNVSVVDLTVNLEKPATYAEICAEIKRASENEMKGVLGYTE
                     DAVVSTDFNGATETSVFDAAAGIALTDTFVKLVSWYDNEVGYSNKVLDLVAHVYNYKG
                     "
BASE COUNT         4795 a         2616 c         3264 g         4590 t
ORIGIN      
        1 atggaaaaaa aagccctttt ccgtggattt ttattatcga cagtggcatt agcagtggct
       61 gcttgtggta acttaagtaa agtgagtgat gaaggaacaa ctgaaaaccc ggtattcccg
      121 aaaatctcag aatctgaatt taaccacgat ggttcacaat ttggttcatg gccaaactgg
      181 gaaaacgttc gtcaaattga aaaagggatg aacaaagatc aattatataa tctaattggt
      241 cgtcctcatt ttgaagaagg cttatatggt gttcgtgaat gggactatgc attcaattac
      301 cgtgaaaatg gcgtacataa aatttgccaa tttaaaattt tattcgataa aaatatgaat
      361 gcacaaagtt tcttctggta tccaaatgga tgtaatggaa actcatcatt tgctttaact
      421 ggcgatttct tattcgattt cgataaagcg actttaacta caaaaggtaa agaagttgtt
      481 gataatgttg ctcaacaatt aaaagcatct aaagcacaac aagttaaagt agcaggctat
      541 acagaccgtt taggctctgc tgcttataac ttagacttat cacagcgtcg ttctaataca
      601 gttaaagctc gtttagtaca acaaggcgtt acagcacaaa ttgaagcggt aggttatggt
      661 aaagcgaatc aagtaaaagc ttgtgatggt gaaactggtc aagcattaaa agattgttta
      721 cgccctaacc gtcgtgttga aatttctgca aattgtggtg taatgaaaca aaatgaaggt
      781 ggcaatgttg caggtcctaa tggtccggct ccactttatc aaaccccagc atatgatggc
      841 agtaaataat ttctagtttt gactaactta gagtagaata ttaaggcaac caaatggttg
      901 ccttttcttt tatctattta tttatagggg aatactatga actaccaagc tattgcattt
      961 gatttagacg gaacactact ttcatcgaac gcaacaattt tagaatccag taaagaggct
     1021 attaaaaagg taagagaaaa gggaattaaa gtctactttg ttaccggtag gcaccatact
     1081 gcggttcgcc cttattatgt agaactaggg ctggatacgc cagttgtgtg ttgcaatggc
     1141 acttatgtgt atgattttaa aaatgaaaaa gtattaagcg gtaatccgtt atcagcagaa
     1201 attgcttcaa aattagttaa tgatgcacaa gctcaaggga ttcatactgc ggtttatttt
     1261 gaagatgcaa tgacttatga gtctttgaat attcacttca ctaaattcca aaaatgggtt
     1321 gagtcttgcg caccagaagt tcgtccgaat gtttatcagg tagaaaattt ccaacaagaa
     1381 attgataaag gtgtaaccgt atggaaagtg cttattagcg atccagatct tgccaaaatg
     1441 caaaaatttg ttgaaaaatt accgcctgat caagtaagcc cggaatggtc ttgggttgat
     1501 agggttgata ttaccagtgt tggtaacagc aaaggggcaa gattagcgga agtattaaaa
     1561 acagaaggta ttgatttaca aaaggtgatt gcctttggcg ataatttcaa tgatgtttct
     1621 atgctagaaa ccgttggatt aggcattgca atgggaaatt cagaaccaga tattcagcaa
     1681 aaagcgaaga aaactatagg ttcaaataat gaagatagta ttgctaatga attgaaagct
     1741 caatttaatc tttaattatg ataaaagcaa aatactctat tgctaggcgg ataggactct
     1801 attttttaat tatgatcgga tttgcttcga ttatcagtgg aatctcactt ggtattatgt
     1861 ggagcaataa atctgatgcg agcctgatta atgtttcagg ctcacttcgt atgcaaagtt
     1921 atcgattgtt atcagaaatg gattcaaaaa aagcgctgct acctgagcga ttgttggaat
     1981 atcatcgaac gctacatgct acagagctta gttcattaaa gcaaagtgtt ttattgccag
     2041 atagcgtgat agaaagctat caacaattac ttaaagattg gtatgaaatg caatcttatg
     2101 tcgctcaggg agataaagtt aattatgctt cgcacattga agattatgtg cagagagttg
     2161 atgattttgt tttccgctta caagagttcg ctgagttaaa attaaagatt gcaacaggcg
     2221 tgattgcgat tgcaatgtta ctgattattg cccttgctta tattggcgtt tggtatactc
     2281 gaaaaaagat tattggacct ttaaggcaat tggtaaaagc gagttggcaa attcaaaata
     2341 aagattttga ccacgtaaaa ttagcggtta atgaacccaa tgaattaggg ctactttcct
     2401 ctacttttac tgagatgtct aatgaattat taaaattata tacttcatta gaagataaag
     2461 ttcaggataa aacacgtcgt ttattggcgg taaatcgttc tttactggta ttatatcaat
     2521 gctctcaatt attaactgct aagccgatta ataaagaagt gttaaatcaa gtacttaaaa
     2581 cggtatttga taatgaacat ttgctaggga ttgatttaca agtatatggg gctgaatatt
     2641 ggaatgtatc aatagacaat aaaccaagtt tagattgggt ttctgctgaa attgcaatag
     2701 aaaatgaaaa attgggtatc ttaagctgga aaccctcact ggtttgtcct ggtgaacgat
     2761 tgatccaaaa tgtgtcggaa atgattggtc gtagccttta tgtagtgcag atgcaaaagc
     2821 aacagcaaca attggtactc atggaggagc gtgcaattat tgctcgtgag ttacacgatt
     2881 ccttagccca atctcttacg tttttcaaaa ttcaggttag cctgcttaag cttgctaaaa
     2941 cagatgaaaa gcgtaatgaa attttaactg tatttgaaaa agcgttaaat gatgcttaca
     3001 gccaattaag ggagctgttg acgacgttta ggctaacgat tcaagaagcg aatttacaac
     3061 aagcgttaga aaaaatttta gaaagcttaa gaccgaaaac ctcagcacag attcgcttaa
     3121 gttgcaaatt accttcgcat atgtttaatg ctcagcagca agttcacgta ttgcaaattg
     3181 tacgagaagc tgtgattaat gctattaagc attcgcaagc cactgaaatt aatgtgattg
     3241 ctgaaacaaa tgatgatggt gaacattgtt tgactattca agataatggc gtagggcttg
     3301 ctgcccatac gcaaccagaa gggcattatg gactgacgat tatgcaagaa cgggcggctg
     3361 aactcaaagc cgaattttcg attgaaaatg tggaaagtgg cggagtaaaa gtacaggttt
     3421 tattgccgag tatgattagc aagcggtaat aaaatattaa ttttttgcgt attattggca
     3481 acgaataaaa ggataacaaa tgcaattccg aaaagcagta gaagcggatt ttgagacaat
     3541 attggcaatt tataatcaag caattcccac tcaccaaatt accgccgatt tagaactggc
     3601 aactacgcaa aatcggcgga agtggttcga ttttcacctt gaaacagccc aatatcctat
     3661 ttgggtggtc gaagatgaaa aaggcattgc tggctggttt agtttttcac cattttatga
     3721 aagaccggca tttttacata cttcggaaat cagtatctat ttagaccgct attccaaagg
     3781 aaaaggctat ggctcaaaaa ttattgagtt tatgcaagct gaaatgctta atcacaatat
     3841 tcatacgttg atggcgtatg tgtttgaatt aaatacagtg agccaaaatc taatgagaaa
     3901 acacggcttt gaacaatggg gaagatttcc gaatattgct aatatgggaa aagatgagaa
     3961 aggtgaggat aaatggcgaa cgttgctgat gatgtcttac caaaaaggta tcgaataaca
     4021 agcggtgatt ttttagaata tttttgcaaa taaggacaat atggaaaaga caaaaattgt
     4081 acttgcaaca agtaatgcag ataaagttaa agaaatggca gatgtactct cacaatttgg
     4141 ttttgaggtg gtggctcaaa gtgaatttgg gattgaatca ccggaagaaa ccggtttgac
     4201 ttttgttgaa aatgcgctga ttaaagcacg atttgctgct aaaatgacag gtttaccggc
     4261 gattgccgat gattcaggtt tatcggttat ggcacttggt ggtgaaccgg ggctatattc
     4321 tgcacgttat gccggagagc aggcaaccga tgccgataat cgccaaaaat tactagccaa
     4381 aatgcaaggg caagagaatc gtctggcgaa atttgtcagt tgtatcgtgt ttttaaaaca
     4441 cgaaactgac ccaacacctt atattgcgtc gggtgaatgt ttcggtgaaa ttttgacgga
     4501 agaaagaggt gaaaatggtt tcggctacga ttccctgttt ttctacccac cgaaagcttg
     4561 cacttttgcc gaattagaaa ccaaagagaa aaaagcgatt tcacaccgtg caatcgcact
     4621 agagcaatta aaacagcaat tagcaggaga gaataaatga ttattacaac tacacctacg
     4681 atagagggta aacaaattgt agaatacaaa gggttagtat ttggcgaagt agtttctggg
     4741 gctaatttta tccgtgattt cttagccggt atcaccgata ttattggcgg acgttcaggt
     4801 gcttatgaaa gcaaattaaa cggtgcaaga aaagaggcat tagctgaatt agctaaggag
     4861 gcacaaaaag tgggggcaaa tgcggtggtt ggcgtttcta tggagtatca atcaatgggc
     4921 ggcgataaag gaatgttcat cgtggtagcg actggtactg cggttgtaat acgttaattt
     4981 atgcagtttg aacaacactt tgaagcaaat ttctggcaga acaaatcgct acttgaaatg
     5041 aatgatgctg aatgggaagc attatgtgac ggttgtggta agtgctgcta ccggaaatat
     5101 attcagggaa gagggcggcg tgaacggctt tactatacct cggttgcctg taatttatta
     5161 gatgtgaata caggccgttg tatgaattac tcgaaccgtt ttaaaattga gtcggattgt
     5221 acaaaattaa ctaaaaagaa cttacctgat tttggctggt tgccaaaaac ctgtgcttat
     5281 cgtttacttt atgaaggaaa gcctcttttt gattggcacc ctttaatctc taaagatcct
     5341 gattctgtaa aaaatgccgg aatgctgatt gctaacggta ttcacgaaaa agatgtgatt
     5401 gattggtttg agtttgttat tgatgaagta tgagaaaaag gcgtttggtg caaacgcctt
     5461 tttgttatag agattaggct ttttccatct caaattcaat taacatcatc aaaatatgaa
     5521 tcactttaat gtgaatttct tggatgcggt ctgcgtaacg gaaatgaggt actcggattt
     5581 ccacatcggc taatcctgcc atttgcccgc catctttgcc ggtcattgca attactttca
     5641 tgcctttttc tttggcaact ttgatcgcat ttaacacatt tttagagtta ccagaggttg
     5701 atagaccaaa gagtacatcg cctttttgcc caacggcctc tagataacga gagaagacat
     5761 attcataacc gaagtcatta cttacacagc ttaaatggct gacatcggaa atagcgattg
     5821 ccgggtatcc gggacggttt tcacggtaac gacctgttaa ttcttcggca aagtgcatcg
     5881 catcacagtg cgaaccgcca ttaccgcaag aaatcacctt accaccttgc ttgaaactat
     5941 ttgcaatcag catggcggca tcttgaatta atttaatatt tttttcatca gacataaatt
     6001 tgtctaatac atctgcagct tcttgaagct cagctttaat ttgttctaaa tacatcattt
     6061 gctcctttgt ttgcaaaacg cttaccttta aacatcggct ttaccaatgg gggtagcgag
     6121 taaaaaattc gttttttatg accgcttgag gcataaaaag tgcaataagt ttagaagatc
     6181 tatgctgtat tgtaaaccta ataacttaaa taatctgaat agggttgtaa acaaaagttt
     6241 ccaaaagaga aaaatagcgg tatgatcgcc tcacaatccc tctcgcattg ttaactctag
     6301 tagctaatat caggctttaa gcgtattaaa caatgcacaa atttgctatt tataggagac
     6361 tatatggtcg taaatccaga atcttttgaa cagataattg gacaatctgt aaagataaaa
     6421 gaggttgttg aacaagcaaa aaaatttgcc aaccttgatg caccattatt gattcaaggt
     6481 gagacgggaa caggaaaaga tttatttgcc aaatcttgtc accattttgg atctcgtcga
     6541 atgcaaaaat ttattgccgt gaactgtgcc ggtttaccgg ctgaagaagc agaatcggaa
     6601 atgttcggac atcgtggcaa tggcgttgag tccgtcggtt tctttgaata tgctcacggt
     6661 ggtacagtat tattagactc tatttctgag ttatcgctgg aaatgcaagc caaattattg
     6721 cgctttttaa atgatggctc ttttcgtcga gtgggcgaag atcaagagat tcaagtcaat
     6781 gttagggtga tctgtacttc attacagcct ttgtcattat tagttgaaaa aggcaaagta
     6841 agagaagatc tgtttcatcg tttaaatgtt ctcactttaa atttaccacc tttgcgagat
     6901 cgaaaagagg atattccatt attagctgat tactttatcg cccaaattag caatcagttg
     6961 ggggtgagca aattagagta tgataatgtt tttttgcaag cattgcagaa ttatcactgg
     7021 cgaggcaact taagagagct ttataacgca ctttatcgag cttgtacact ttcgcatagc
     7081 taccgtttag cggtaaaaga tcttcattta cccagagata tggaggcgat gattgaagta
     7141 cgtgaggagg cgacacttga ggaaatgatg agccagtatg aagcccaatt attgcaccaa
     7201 ttttatgcag aatatccgag tacccgaaaa ttagcacaac ggctcggact ttcacatact
     7261 gcggtggcaa acaaattgcg tcaatatggg ttaacaaaaa atggaaacag taaagatgaa
     7321 taaactagcg gtcatttttt cagtatgttt tgcaaattta gggctaaatt cgaccgctta
     7381 cgcagcgcca agtattcctc aagagctact tgaaaatagc cttgtgtatt gcactacttc
     7441 atcgggattc tcttttaacc cacaaaaatc cgatgtgagt tcgaatatga atgtggtaac
     7501 agagcagatc tacgataaat tagttgagtt taatccgaaa aaaaatcgac tagagcctgc
     7561 tttagctgaa agttattcaa tcagcgacga tggtttagtg attacattac gtttaagaaa
     7621 aaatgtcgct tttcatacaa ctccatggtt tactccgagt cgtaaattaa acgcagaaga
     7681 tgtggtgttt tcgctaaaac gaatgattgg taaagaaagt gatttacctg aagtgaaaag
     7741 tgagcctgaa agtgtattac accaccagcg acaaagctat atttaccaaa aaacagcggg
     7801 gcagatttat tttccttatt ttgaaagtgt tgatttagcg aataaaattg ccagcattca
     7861 ttctccgtca aatgacattg taaaaattga attagtccgt cctgattcag cattgttggc
     7921 gcatttagcc agccaatatg cagttattct gtctaaagaa tatgctttac agctcaatgc
     7981 agatgataac ttagttcaac tggatttatt accggtagga acaggcgtat atcaacttga
     8041 aagttatgaa aataatgatt atgtgcgttt aaaaccaaat atgaattact ggggcaaaaa
     8101 agcatatatt caaaatatgg tcgtagattt ttccacagaa gcgaccggca ggatggcaaa
     8161 atttttaaat aatgaatgtg atgtggttgc ttttccggaa cctagccaat tatcagtgtt
     8221 aaataatcgg cagcttatta gtagtaaagg tgctaatttg gtttatttag cattcaatat
     8281 gcaacggggt attgggcagg atttggcatt acgccaacgt attgcacgcg gcataaatcg
     8341 caaacgtatt gcagagaaat tattttatgg tacaggtgaa gtagcggata acctattacc
     8401 aacagctttg tggtcgaaaa aaaataatgg aagctaccct tatcaaccac accaaaattc
     8461 aggtgagcaa gcggttgaaa tgcatgacag tattataaat cggtctttag atagcaaaac
     8521 agagaccgaa gaagtaaacc aaaaacagcg cttaaaactg tgggtaattg atgaaaaacg
     8581 agtttataat caacacccat taaaaatggc agaaatgata cgtgctgatt tagctacgca
     8641 aaatttagag gtcgaaattc gcgcagtaag tcgagcttat ttggtgcaac agcttgctaa
     8701 taaaagtgcg gattatgatt tgattttagg tggttggtta gcaaataatc ttgatcctaa
     8761 cagttttttg gaggccttac tcagttgtaa agctgcggaa acggtgacta atttatcaaa
     8821 ttggtgcaat gaagattttg atttttggtt acaaacagcc cgtctaagtg atgatccggc
     8881 atcagctaat ttattgtatg aatttgcaca aaaattatta gaagagcaat tgcctattct
     8941 ccctttaatg aatgctaatc gtgtattagt cataaaagat ggagtgaaac aggcagatat
     9001 ttcccctttc ggccaggtaa aattatcaga gttacgtttg ggcttggggc ataaaaaagg
     9061 aaactaatta tgctgattgt cttttttcga aaaatttttc taaccttgat tacgttgatt
     9121 tttttgtcac ttatcagttt taatattctg ttacgagatc cattaaacca cttagccgag
     9181 ttaggctggt ttgaggctta ttgttattat gtaaaatctc tgctaaatgg tgattttggt
     9241 attagtttca gtaatggaga accgctcaca gcgcaaattt tacaggtgtt cccggctaca
     9301 attacgcttt gtttatcggc tctcattgtt tctttaatta ttggtttgcc tcttggtttt
     9361 tttgcggcta ctcagcaaaa aaatatggtt gggcgattat taaatacact aggttcattg
     9421 agtttagccg tgccggtatt ttggctggca ttagtgctaa tgtattacgc ttctctcaat
     9481 cagtgggaag tgtcagcaat tggagaaatc cattcgcttt atccgaaaca gatggtaacc
     9541 ggctttttgc tattagatat ttggttatct gatgtacctt ataaattaaa aatgatgcag
     9601 agtgctttac atcacttagc tttgccgaca ttagtcttgg ctgtgccagc tacattagaa
     9661 gttatgcata ttactcaagc tagagcaggt tatgtaatga aacaaaatta cattaaaata
     9721 gcgaaaacgc gtggctggac accgtttaga gtttggagaa cgcatattat ttgtaatact
     9781 ttacctgcat tattacctat gattgcccgt acctttattt taatttttgc cttcggtatg
     9841 ttaattgaga acatatttag ctggggagga attggacgtt ggctgataaa tgcccttgct
     9901 attcaagact ataatgcgat ttcagcggga gtagttgcaa tcggggtgtt tgtgttatta
     9961 gtagatatgg ttacaggctt tgtgcgggtg atgttagacc catcagataa aaaggattgg
    10021 tatggcagtt attaaagaac ccgagcaatt tagagaaacc aacgcattta aggcattttg
    10081 gtttcatttc cgacaagata aacttgcact tggcagtttt tatctttttt tgctattact
    10141 ggctctcatt tttgttggta gtttgcttgc tccttacaat tataatgaac aatttgttgg
    10201 tttagaatta atgcctccct cttgggacga caaaggtcaa atcagccatt ttttaggcac
    10261 tgacgattta ggacgggata ttttaagccg tattatgtat ggtttttact acacgcttgg
    10321 ttccgcactg atgattacct tattaattgc gattatcggc ggtatgatcg ggatttatgc
    10381 cgggctgaaa aaaggacgtt cattttggtt gattagccat ttgttcgata cctttttatt
    10441 tatgccgatt ttattgattg cgatcatcat tgcaacctta atggaagcga gtttggtcaa
    10501 tgcaatgttg gcgattttct tagcgatgtt gccgcatttt atccataaaa tttatcaagc
    10561 aaccgaaaaa caactcaaaa aagagtacat cattacctta aagctagacg gtgcaagctg
    10621 ctggtattta attcgagaag tgattattcc taatcttacc ggcgtggcaa ttaaagcact
    10681 ttcacatatt tttgtgatcg ccatattaga tattagtgcg ttaagtttta ttatgctggg
    10741 ggctaaaagc ccgacccctg aatggggagc gatgattcgt gaatccatgg aactgattta
    10801 tatagctcct tggacggtga tattacctgg cttagcaatt atttttagta tttttaccgt
    10861 tacaatactt ggtacacgct taagcgtgat ttttgaaaaa taccgtaaag aatagtattt
    10921 aaataggata ctgacacata acaagcggtc atttttaagt aaaattttac agattaagga
    10981 atagtatggc attacttgat attcgccatt taagtattga aattgatatg ccaaaaggca
    11041 gagtaaaaat ggtggataac atcaacctga ctgttgatga gggcgaaatt tgtggcttgg
    11101 tgggagaatc tggttcggga aaaagcctca tagccaaagt gatttgcggt atgattaaag
    11161 atgaatggat tgtgagtgca gatcgctttc gctttgacga tattgaatta ctgaaacttt
    11221 cgccagcgga acgccgaaaa ttggtaggcg atcatatttc aatggtattc caagatccgc
    11281 ttactagcct tgacccaagc cagcaaattg gtaaacaact gatgcaaacc attcaattta
    11341 gagggaagtg gtggcaacga tttgggtgga aaaagaaaaa agcaatcgag ctactacacc
    11401 gtgttggtat tcgtgatcat caagatatta tgaaaagtta cccaagcgat attaccgaag
    11461 gcgaagctca gaaagtgatg attgcaatgg cggtggcaaa tcagccccga ttattggtgg
    11521 cagatgagcc gactaatatt atggaatcaa ccacgcagtt gcaggtttat cgcttgcttt
    11581 ccagtatgaa tcagaatttg ggaacctcaa tcttgctggt gagtaatgac atgcgtagca
    11641 ttcaaaattg ggttgattct tacaatgtgc tttattgtgg acaaaccgtt gaaattgcgg
    11701 ataaagagag cattcttgaa tcgtcttacc acccctatac tcgagtgtta ctcaatagtt
    11761 cgccggactt ttctcagcct ttagccttta aaagtagctt aaatacgcta cgaggctcag
    11821 tcccgatgtt acaagaaatg ccgattggtt gtcgtttagg ccctcgttgc ccttttgcac
    11881 aaaaaaaatg tatcaacaaa ccgccattag tgaaagtaaa acagcacgag tttgcctgcc
    11941 attttccgat taactttaga gaacaaaatt tgcttaaaaa taaaacggaa aatacgccgt
    12001 ttgtggtggc tgaaatagcg gaaaaagagg cgttttaatg tggttattat tggctaagtg
    12061 taacgggtaa cattaaagta tctaatacga aactcaaggg taaatcgatc accgcaagca
    12121 ccgcgaatat accgccttct tgcattactt ggaaatcttt tattacgccg gcataaacac
    12181 ggtaatcctg ttcaaccaag cttagtactg tgccacaagc ggtgaggtta aacatcaaat
    12241 agagtagaaa aacgagttta caagcggtca atttcatcaa aaaatctcca aatacgcttt
    12301 tattttacgc tatttttatc gggttggcgt aaaattcgtt ttaaaaacag ctattttcag
    12361 gcagaatgta gccgaatcga cattaaatat actaagagga tcttatatgc aaacttacaa
    12421 cattgcagtg cttgccggtg acggcattgg gccggaagtg atggcagaag ctatcaaagt
    12481 gcttgaagcg actcaacaaa aatttggctt taaactaaat tttaatcaat ataacattgg
    12541 tggagcagcg attgatgctc aaggtaaagc gttacccgaa aataccttaa aaggctgtga
    12601 agaggcagat gcgattttgt ttggctcggt aggtggcccg aaatggacgc atttactacc
    12661 tgatgagcaa cctgaacgag gttcgctatt accactgcgt aaacatttct cgctattctg
    12721 taatttacgc cctgctgcat tgtatcaagg gctggaaaaa ttctgcccat tacgtgccga
    12781 tattgctgct aaaggttttg atatggtggt ggtgcgtgaa ttaaccggcg ggatttattt
    12841 tggacagccg aaaggccgtg atggtgaagg tgcgcaaacg agagcgtttg acaccgaagt
    12901 atactacaaa tatgaaatcg agcgtattac ccgtgtggcg tttgaatctg caatgaaacg
    12961 taaaaaacac gtaacctctg tggataaagc caatgtgtta caaagctcga ttttatggcg
    13021 tgaaaccgtc acggaagtag ctaaagagtt cccagaagtc acgcttgagc atatgtatat
    13081 tgataatgcg acaatgcagc taatcaaagc acctgaatcg ttcgatattt tattatgctc
    13141 aaacatcttc ggcgatatta tttccgatga ggctgcaatg attacaggtt ctatgggcat
    13201 gttgccttca gccagcctca atgagcaagg tttcggctta tatgaaccgg caggcggttc
    13261 agcaccggat attgccggta aaaatattgc gaatccgatt gcgcaaattt tatcagccgc
    13321 aatgatgttg cgttatagct ttaacttagg tgatgctgct gatgcgattg aaacagcgat
    13381 ccaaaaagcc cttgctgatg gctaccgtac cgctgattta gctgatgaca gcaaaccgct
    13441 ttctacctca gaaatgggcg atattattgc gaaaaatatt ctcgcttaag gctagaagtt
    13501 aaatagcaca agcggtcatt attcgccaaa tttttgcaaa ttttccgcta ataatgaccg
    13561 cttgtttatt actcgttagc cgtcaatctc ttcgcctgtt tcttcccact taaaattcaa
    13621 tgccgcagag ttgaggcaaa aacgcaaccc tgttggtggt gggccgtccg gaaaaacgtg
    13681 tcccatatgc gaatcacaat tcccacaacg aatttcgata cgatgacgtc ctaaactgta
    13741 atcatctaag taacgtagtg acgattctga aatcgtttgg taaaaacttg gccagccaca
    13801 accggcatca aatttagtat ctgagtgaaa taaatcgtta tggcatctgg cacaacgata
    13861 aattcctacc cgatgttcat tcaaaaattt tccggtaaac ggacgttccg taccgtggtt
    13921 gattaaaata tcaacttgtt gttctgtcag ggcgtgaata ggtttaatca tcagcaattc
    13981 tcctaagata gtagcgaagt cattgtagct ttttttgacc tgaaaatcgt tataaatttc
    14041 aaaatttgac atagatcaca aaaaatttat ctgttatatt ggaagggttc ttttggcttg
    14101 tcaggaaagt gaaaagatgt gctataattc aagcatcttt agtgtagtac ataaagaaca
    14161 aattttgttt aactttaata taggtagaaa aatctatggc aattaaaatt ggtattaacg
    14221 gctttggccg tatcggtcgt atcgttttcc gtgcagcaca acaccgtgat gacatcgaag
    14281 tggtaggtat caacgactta atcgatgttg attatatggc ttatatgctg aaatatgatt
    14341 caactcacgg tcgttttgac ggtactgttg aagttaaaga cggtcaatta gtagttaacg
    14401 gtaaagcgat ccgcgtaaca gctgagcgtg acccggctaa cttaaaatgg aatgagatcg
    14461 gtgttgatat cgcagttgaa gcaacaggtt tattcttaga tgatgaaact gctcgcaaac
    14521 acatcaccgc aggtgcgaag aaagttgttt taaccggtcc gtctaaagat gcaacaccta
    14581 tgttcgtaaa cggcgtaaac tttgatactt acgcaggtca agacatcgtg tctaacgctt
    14641 cttgtacaac taactgttta gcaccattag cgaaagttat tcacgaaaaa ttcggtatca
    14701 aagaaggttt aatgacaact gttcacgcaa ctactgcaac gcaaaaaaca gtagatggtc
    14761 catcagcgaa agactggcgt ggtggtcgtg gcgcgtcaca aaacatcatt ccttcatcaa
    14821 caggtgcagc gaaagcagta ggtaaggtat tacctgcatt aaacggtaaa ttaaccggta
    14881 tggctttccg tgttccaacc actaacgttt ctgttgttga tttaactgta aacttagaaa
    14941 aaccagcaac ttatgcagaa atctgtgctg aaatcaaacg tgcttcagaa aacgaaatga
    15001 aaggcgtatt aggctacaca gaagatgcag ttgtttcaac agacttcaat ggtgcaactg
    15061 aaacttcagt atttgatgca gcagcaggta tcgcattaac tgatactttc gttaaattag
    15121 tatcttggta cgataacgaa gttggctact caaacaaagt attagactta gttgctcacg
    15181 tatataacta caaaggttaa ttgctaagtt atattttaaa tatagagcca aattctgaac
    15241 ggaatttggc tcttttgctg cgaac
//
LOCUS       DANMBQ010000055        15116 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.055, whole genome shotgun sequence.
ACCESSION   DANMBQ010000055 DANMBQ010000000
VERSION     DANMBQ010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15116
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.055"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            25..372
                     /locus_tag="PXE92_001378"
     CDS             25..372
                     /locus_tag="PXE92_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760629.1"
                     /translation="MFREEAIEYQSKKWKSTAVLFSRVPALVVFSISFFIFTAFILFI
                     VFGNYTRRETVVGELVMQSHPILLSAPKSGYISENYIQPHQQVKKRAIRWLKLRWIEL
                     RIAKILMLILFFR"
     gene            369..1286
                     /locus_tag="PXE92_001379"
     CDS             369..1286
                     /locus_tag="PXE92_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HDL5760630.1"
                     /translation="MKSQIQATEQAITALYKNKSETINSLEKQIKNSQKIYQDKQSYL
                     VEIEKSMNDYAELVKRYEKLLKVGHSSHDEVNIQKSRYFQQKSLFNELKQELIQLKST
                     QLSLENEIETRKTEFNNQIIRYEMQKSDLNIRLMEFESVSDIIVNASLDGKIESTSVT
                     VGQIIKENDPLAQILPQNKGNYQLVMWVPNSAISFIKQGDEVNIRYEAFPFEKFGQFK
                     GKITSISTLPASLQELSFYKNLPVNLEQGIPLYKILIELADQNVKYNDTSLYFMSGMK
                     AEATLFLEKRKLYEWIFFPMYQLRKNMEQ"
     gene            1286..2077
                     /locus_tag="PXE92_001380"
     CDS             1286..2077
                     /locus_tag="PXE92_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase C39"
                     /protein_id="HDL5760631.1"
                     /translation="MTGIKQLKFDFRRRIPVILQTETAECGLACLAMMLGYYDKNTNL
                     FELRSQYGTSSRGVTLHTLISIANDCGLITRPLSLELDEVPQLRLPCILHWDFNHFVV
                     LTHASEKQFIIHDPAFGKRKLSRAEFSNHFTGVALEVWSEVKFEKSNNENTISLYETL
                     KHISGIKGALVKIFALSMLIELIALLMPIGTQLVMDHVMQAKDQSLLLIICIGLFLFT
                     LFRTMVSMFRAWVSLKMNYLIDFQWTASFFSHLLKLPLDFFENAK"
     gene            2455..3372
                     /locus_tag="PXE92_001381"
                     /pseudo
     CDS             2455..3372
                     /locus_tag="PXE92_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167835.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(3374..4042)
                     /locus_tag="PXE92_001382"
     CDS             complement(3374..4042)
                     /locus_tag="PXE92_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDL5760632.1"
                     /translation="MKYLYALIFSLFFSSVYAAERQLQCKVVGISDGDTLTCLVNKTP
                     LKIRLQHIDAPEQAQPYGNKAKQALAQFVFQQNITAIVSGYDRYQRLLATLYLNDKNI
                     NLALVENGMAWAYTTKREYIEAQDQAQQAKIGLWQDKFPINPSQWRKTHTSTLPQAVK
                     KPENIANQPPTIDCQIKLSCNQIGNYAQAKRYFQQCGWKELDGNNDSIPCNKLYRQEQ
                     KNRN"
     gene            complement(4086..5453)
                     /locus_tag="PXE92_001383"
     CDS             complement(4086..5453)
                     /locus_tag="PXE92_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDL5760633.1"
                     /translation="MSIDTILNQINSFVWGPPLLILISGVGLYLTFSLKGIQLSQLGQ
                     AFRYMFKPEKGKGQSGDISAFAALSTALAATIGTGNIVGVATAIHSGGPGALFWMWLI
                     ALFGMATKYAEGLLAIKYRTKDRAGFVAGGPMYYIELGMGKKWRWLAKAFAFFGVLVA
                     LLGIGTFPQVNGITHALESTFDVPIIFSAIILTLIVTAIILGGVQRISKIATIVVPFM
                     AIGYVIAALSVILLNMEKVPQAIITIVHAAFNPQAALGGAVGFTVMQAIQLGVARGIF
                     SNESGLGSAPIAAAAAQTKEPVRQGLISMTGTFLDTIIVCTMTGLVIVISGAWAGDVK
                     GAELTTTAFTQGLNSSFGAIIVTVGLVFFAFTTILGWCYYGERCFVYLTRGRTQYIKL
                     YRLLFIALIASAPFLQLDTIWTLADIVNGLMAFPNLIALIALRKVIISETKDFFARLK
                     TGKAE"
     regulatory      complement(5572..5667)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            complement(5838..6890)
                     /locus_tag="PXE92_001384"
     CDS             complement(5838..6890)
                     /locus_tag="PXE92_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL5760634.1"
                     /translation="MTHSTKTLVAIASIIIILAGIKLSNEIVVPFLLSLFIAIICSPM
                     IKFMTKRKVPLWLAITILLIVFILGFSFLAGIINNTLQEFTNAIPQYKIQLSSRIQVI
                     LELAHRWHIPLTLSQEEIMSKFDPSSIMNLVSKLLMGLSGALSNIFVIFLVVIFMLLE
                     MPVAKYKLALALSPDDDLSNEKEYINQVLEGVIGYLGVKTFVSLLTGGLVWILLEILG
                     VEYAILWAILTFLLNYVPNIGSILAGIPIVIQALVLNGFSIGLGTLIGIVVINMVVGN
                     ALEPKLMGKKLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMACKVALESNKATQKYA
                     VLFSDLEEVPKEQKYR"
     gene            complement(6937..7362)
                     /gene="ruvX"
                     /locus_tag="PXE92_001385"
     CDS             complement(6937..7362)
                     /gene="ruvX"
                     /locus_tag="PXE92_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDL5760635.1"
                     /translation="MTETTTKTVIAFDFGTNSIGCAVGQSITGTAQGLTTFKAQDGIP
                     NWEEIGKLLQDWKPDMLVVGLPLNMDGTEQPLTQRARKFANRLNGRFNLPVELQDERL
                     TTVEAKAEIFSRGGYKALKKDKVDSISACLILESWFENH"
     gene            complement(7362..7922)
                     /locus_tag="PXE92_001386"
     CDS             complement(7362..7922)
                     /locus_tag="PXE92_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HDL5760636.1"
                     /translation="MLENLQGKFLIATPEMDDDYFERTVVYICEHNPQGAMGVVINTP
                     TDLSVLELITRMDFQMANQRDYKKDQMVLSGGPVNQDRGFIIHTKTANDFIHTYPITD
                     KITLTTSGDVLDSFGTLASPEKFIVCLGCSTWRGSQLEQEIAQNYWIVSDANEKTLFE
                     TGYLERWAEAYEMMGLSSIPSRAGRA"
     gene            complement(7922..8653)
                     /gene="rsmE"
                     /locus_tag="PXE92_001387"
     CDS             complement(7922..8653)
                     /gene="rsmE"
                     /locus_tag="PXE92_001387"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDL5760637.1"
                     /translation="MRIPRIYQPQPLAGLQSCVLSEDAANHVGRVLRMKQGEQIILFD
                     GSNHVFHATLQAVEKKQIIAKIDSSELDDRESNLPIHLGQVISRGDRMEFTIQKSVEL
                     GVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWC
                     KEQDDMLKLNLHPRAKYTIRELPNVPKAGVRLLIGSEGGLSAEEIAMTESEGFTEVLL
                     GKRVLRTETASLAAITALQVCFGDI"
     gene            complement(8713..9003)
                     /locus_tag="PXE92_001388"
     CDS             complement(8713..9003)
                     /locus_tag="PXE92_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5760638.1"
                     /translation="MPKKLHNIYYTEEALIDLENIAISVSEFTGYASSGIRILEELEN
                     SINNLAIFPTMGVKGAIINTRELYHNGYRIVCEVKENEISIITIVHCSRLYP"
     gene            complement(8984..9157)
                     /locus_tag="PXE92_001389"
     CDS             complement(8984..9157)
                     /locus_tag="PXE92_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760639.1"
                     /translation="MNNPYHNVSQEYLDYLAKKVKQGKEDIKNGRIYSPEEVRKRVIA
                     AAFRGAENAKKVA"
     gene            complement(9329..9916)
                     /locus_tag="PXE92_001390"
     CDS             complement(9329..9916)
                     /locus_tag="PXE92_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760640.1"
                     /translation="MKRSKKTLVLATTFVAALLAGCQSQSNTLTFSTPTPTAVFNTNN
                     QTAAVNVMTQDLRTSREIASYTKNGEVIRLTAVPEVAAMFQQAVQQDLNAKGFQIVQG
                     AANANVVVNIRKFFATVEQGNLRYKADAQVSVKVAVQGSKGNFSKNFNATRGYEGAFG
                     ASNDEIKKVLDQAYSDVVKAIYNDNEIANAIHQFK"
     gene            10008..10319
                     /locus_tag="PXE92_001391"
     CDS             10008..10319
                     /locus_tag="PXE92_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL5760641.1"
                     /translation="MSVEQTIIQKIKTEFQPIFFNVENESYMHSSGRGAESHFKLTLV
                     SDKFEGQRTVARHRAVYACLAEELANGVHALALHLYTQGEWEATGGLVPKSLNCLGVG
                     Q"
     gene            10411..10500
                     /locus_tag="PXE92_001392"
     tRNA            10411..10500
                     /locus_tag="PXE92_001392"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10445..10447,aa:Ser,seq:gga)
     gene            complement(10676..11050)
                     /locus_tag="PXE92_001393"
     CDS             complement(10676..11050)
                     /locus_tag="PXE92_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein NlpE N-terminal
                     domain-containing protein"
                     /protein_id="HDL5760642.1"
                     /translation="MKKIALIGFTTAMLGACSLLPQKSVSGTYAGELPCADCEKIQAQ
                     LTLNADKTYQYDTVYFKDKKEYTYRDKGTYSWEPNKPNVIRLEKASGNLAFQVSEQHV
                     ELCDPNGNTVKNSNNYKLGKVR"
     gene            complement(11075..11377)
                     /locus_tag="PXE92_001394"
     CDS             complement(11075..11377)
                     /locus_tag="PXE92_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HDL5760643.1"
                     /translation="MKNSAPKKINDILQNSSLSRIVEKANFINDLNQKIQKRWPESYR
                     GLYRVVNLVDNQLIVSVKNATVRQGLILQQNMLLKQIQTDLPEITQLEFRVNPSVT"
     gene            11498..11818
                     /locus_tag="PXE92_001395"
     CDS             11498..11818
                     /locus_tag="PXE92_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2547 family protein"
                     /protein_id="HDL5760644.1"
                     /translation="MSLFLKHFHRTPFWSQLFLGMVAILALPEIQVAYANESEQETVL
                     NQSFLQYAQSANDIEQQSLFIAELIHKIVEIKPQAVHFCEFFANSYRLDRQNAYPIRA
                     GPQT"
     gene            11877..14603
                     /gene="secA"
                     /locus_tag="PXE92_001396"
     CDS             11877..14603
                     /gene="secA"
                     /locus_tag="PXE92_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDL5760645.1"
                     /translation="MISKLLTSIFGSSNDRTLKRLRKRVAQINKLEPTFEQLSDEALK
                     DKTAEFKQRLADGVSLDSLLPEAFATVREASKRVLGMRPFDVQLIGGMVLTGRNIAEM
                     RTGEGKTLTATLSCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGLTVGVNIPG
                     LPSDAKRAAYQADITYSTNSELGFDYLRDNLAHDKNERFQRELHYALVDEVDSILIDE
                     ARTPLIISGPAEDATQIYQAVDQIIPHLIAQDKEDSEEYTGEGDFTLDLKNKQAHLTE
                     RGMVKVEDFLTQMGLMEEGESLYHPARISLLHHVSAALRAHKLFERNVDYIVKDGEIV
                     IIDEHTGRTMAGRRWSDGLHQAIEAKERVAIQGENQTVASITYQNYFRLYEKLAGMTG
                     TADTEAFEFQQIYGLNTVVIPTNRPVIRDDRTDLMFKSEAEKFAAIITEIRDCIERKQ
                     PVLVGTASVEKSELLSAELTKAGIAHNVLNAKFHAQEAEIVAEAGAPGAVTIATNMAG
                     RGTDIVLGGNWKMEVAKLENPTQEQIDAIKAAWQERYDIVMQAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNMMRKAFTEEGEAMESKLLT
                     KVIASAQAKVEAHNFDGRKHLLQYDDVANEQRKVIYEQRNHLLETDNIASMIESIRQD
                     VFESTINQYIPPQSIEEMWNVPGLEERLRREFGLDLPISHWLETEKDLHEETLRERIL
                     NIAIAEYNAKEEIVGAEVMRNFEKGVMLQNLDELWKEHLASMDYLRKGIHLRGYAQKD
                     PKQEYKKESFAMFTNMLDTLKLNVISILSRIQVRSKEEVEEAQRQQAEMDAASTPVTQ
                     ATDSAAGSREENSAESLSEEELANLNIGRNDPCPCGSGKKYKHCHGNKARYS"
     gene            14690..15088
                     /gene="mutT"
                     /locus_tag="PXE92_001397"
     CDS             14690..15088
                     /gene="mutT"
                     /locus_tag="PXE92_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HDL5760646.1"
                     /translation="MSKPIIQVSAGIIRNEFGQIYLTQRLEGQDFAQSLEFPGGKVDP
                     NETPEEALKRELEEEIGIQVLSAFPYENFCFEYPTKIIEFFFYLVEEWVNEPYGREGQ
                     EGFWIAQSDLDEGAFPPANAQLIKRLKEHA"
BASE COUNT         4541 a         2830 c         3067 g         4678 t
ORIGIN      
        1 gtagtagtgt aaaattggta ttatatgttc agagaagaag ctattgaata tcaatcgaaa
       61 aaatggaaaa gcacagctgt actatttagc agagttccag ctttggttgt cttttccatt
      121 tctttcttta tctttactgc ctttattcta tttattgtgt ttggtaatta tacccgccgt
      181 gaaacggttg tgggtgaatt agtgatgcaa tctcatccga ttttattatc tgccccaaaa
      241 tccggctata tatccgaaaa ttatattcaa ccacatcagc aggtaaaaaa aagggcgatc
      301 cgctggttaa aattacgctg gatagaatta cgcatagcga aaatattaat gttaattcta
      361 ttctttcgtt gaaatcacaa attcaagcaa cagaacaagc gataactgct ttatataaga
      421 ataaatcaga aactattaat agccttgaaa agcagatcaa aaacagtcaa aaaatttatc
      481 aagataagca gagttattta gtggaaattg aaaaaagtat gaatgactat gcggagttgg
      541 ttaaacgcta tgagaaatta ttaaaagtag ggcattccag ccacgatgaa gtgaatattc
      601 agaaaagccg ttatttccaa caaaaatcac tgtttaatga gctaaagcaa gaattaattc
      661 aattaaaatc cacccaactt agcttggaaa atgaaattga aacccgtaaa accgaattta
      721 ataatcagat tattcgctat gaaatgcaaa aaagcgattt aaacattcgt ttaatggaat
      781 ttgaatctgt ttcagatatt attgttaatg cctctttaga tggaaaaatt gaaagtacca
      841 gcgtaacagt tgggcaaatt attaaagaaa atgacccgct tgcacaaatt ctgccacaga
      901 ataaaggaaa ttatcagcta gtgatgtggg taccgaatag tgccatttca tttattaaac
      961 aaggcgatga ggtgaatatt cgctatgagg cttttccgtt tgaaaaattc gggcagttta
     1021 agggcaaaat tacgtcaatt tcaaccttac cagcttcttt gcaagaactt agtttttata
     1081 aaaatctccc tgtaaattta gagcaaggta ttccgcttta taaaattctg attgagcttg
     1141 ccgatcaaaa cgtaaaatat aatgatacct ccctttattt tatgagtgga atgaaagccg
     1201 aagccacgtt atttttagaa aaacgtaaac tgtatgagtg gatatttttc cctatgtatc
     1261 aattacgcaa aaatatggag caataatgac aggaattaag cagttaaaat ttgattttcg
     1321 gagaagaata cctgttattt tgcaaactga aacagctgaa tgtggcttag cctgtttagc
     1381 gatgatgttg ggctattacg ataaaaacac caatttattt gaattgcgaa gtcaatatgg
     1441 tacttcctct cgtggcgtaa cgctgcatac tttaatttct attgcaaatg actgtggttt
     1501 aataactcgc cctctttctc tagagttaga tgaagtacca caacttcgtc tgccttgtat
     1561 tcttcattgg gattttaatc attttgtagt attaactcac gcaagtgaaa aacagtttat
     1621 tatccacgat cctgctttcg gtaaacgtaa attatcccgt gctgaatttt ccaaccattt
     1681 taccggagtc gctttagaag tttggtctga agttaaattt gagaaaagca acaatgaaaa
     1741 taccattagt ttgtatgaaa ccttaaagca tatttctggc ataaaaggtg cattagtgaa
     1801 aatttttgcc ctttcaatgc tcattgaact cattgcctta ttgatgccaa ttggaacaca
     1861 gttagtgatg gatcacgtta tgcaagcgaa agatcaatca ttacttttaa ttatctgtat
     1921 tgggctattt ttatttaccc tttttcgcac aatggtcagt atgtttaggg cttgggtttc
     1981 cttgaaaatg aattatttaa ttgattttca atggacagcc agtttctttt ctcatctctt
     2041 aaaattaccg cttgatttct ttgaaaacgc caagtaggtg atattcattc ccgatttagt
     2101 tcattaaaaa ccattcagaa aactctaact tcaagcatta ttaccacgat tattgatacg
     2161 attatgataa tcagtttaat tattatgatg gtgttatatg gcggttggct cttttgggta
     2221 gtattagctt tttcctttat ctattttatt cttcgaatgg ttacttattt agtttatcgt
     2281 caactgaatg aagagcagat tattaaagga gcaaaagccc attcgcattt tatggaaact
     2341 ttatatggta ttacaacgtt aaaatcatta ggattggaaa ataaacgaca agaacagtgg
     2401 atgtcgctca atgcggatgc ttttaacaca tcaattaagg taactaaatt tgatatgctg
     2461 ttttccggta ttcatacctt tatttctacc atcgaacaga ttttaattct ttggattggg
     2521 gcgacaatga tgattgaaaa tgtgatgaca ttaggaatgt ttgtcgcttt taatgcctat
     2581 cgaggctctt tctcttcacg aatggggaat ttaattgata ttatttttag cctaaaaatt
     2641 ctttcattac atagagagcg gattgcagac attgctttaa atgaagtcga agatgaaagt
     2701 aaatatcaag aactcagatt tgaacataac caaacagata tagaagttaa agacctttgt
     2761 ttcaaatacg atcctttttc taaaaatgtg cttgaaaatg tcaatttagt gatcagaagt
     2821 ggggaaagtg ttgctattac cgcaccatca ggttatggca aaacaacgtt attaaaatta
     2881 attgcaggtt tattaaaacc aacctcaggt tctgtgtatt ttaacggcat tgatatttat
     2941 cagttaggat taagtcaata tcggagccaa attgcttgcg tattacagga agataaattc
     3001 ttttctggtt ccattttaga gaatattgtt agttttgaaa gtaattatga tcgagaatgg
     3061 gctatcgaat gtagcaaact tgcgaatatt cacaatgata ttatggcaat gccgatgaat
     3121 tatgaaacct tattaggaga attaggaaat aatttgtctg gcggacaaag ataacgattg
     3181 tttattgctc gagctttata taaaaagcct aaaattcttt tgatggatga ggcgactagc
     3241 catttagatg aagaaaatga gaagcttgtc aatcaagcta tttcacgaat gaagataaca
     3301 aggattatta ttgctcatag acaatcgact attcagtcgg cggatagaat tattgccctg
     3361 aatgacaggt aaattaattc ctatttttct gttcttgccg ataaagttta ttgcacggaa
     3421 tgctgtcgtt gttgccgtct agctctttcc agccgcattg ttgaaagtag cgttttgcct
     3481 gtgcgtaatt gccgatttgg ttgcagctta atttaatttg gcaatcaatc gttggtggct
     3541 ggtttgcaat attttccggt tttttgaccg cttgtggtaa ggttgaggtg tgtgtttttc
     3601 gccattggct cgggttaatc gggaatttgt cctgccataa gccgatttta gcttgctgtg
     3661 cttgatcttg tgcttcgata tattcccgct ttgtggtgta agcccacgcc ataccgtttt
     3721 ccactaaggc taagttgatg tttttatcgt ttaagtagag ggtggcaagt aatcgttggt
     3781 aacgatcata gcctgaaact atggcagtaa tgttttgttg aaacacgaat tgagccagag
     3841 cttgtttggc tttgttgccg taaggctgcg cttgttcggg ggcatcaata tgttgtagcc
     3901 ttatttttag tggtgtttta ttgaccaaac aagtgagggt gtcgccatcg ctaatgccaa
     3961 cgactttgca ttgtagttgg cgttcggcgg catataccga tgagaaaaat aagctaaaaa
     4021 tcagggcgta aagatatttc attattaaaa aagagagggc taataagccc tcattctatc
     4081 attttttatt cggctttacc tgttttaagg cgagcgaaga aatcttttgt ttcactaata
     4141 atcactttgc gtaacgcaat caatgcgatt aaattcggga atgccattaa gccgttcacg
     4201 atgtctgcca gcgtccaaat tgtatcgagt tgtaaaaatg gagcagaggc gatgagtgca
     4261 ataaacagca agcggtataa tttaatgtat tgggtgcgac ctcgagtgag atagacaaaa
     4321 cagcgttcac cgtagtagca ccagcctaaa atggtggtaa aggcaaagaa gactaaacca
     4381 actgtcacaa ttatcgcacc gaatgagctg tttaaacctt gagtaaaagc ggttgtggtg
     4441 agttctgcgc cttttacatc gcctgcccaa gcccctgaaa tcacaattac taagccggtc
     4501 attgtgcaga cgataatagt gtctaagaac gtgccggtca ttgaaattag gccttgacgt
     4561 accggctctt tggtttgggc ggcagcggcg gcgatggggg cagagcctaa tcctgattca
     4621 ttcgagaaaa taccacgtgc aacccctaat tgaatcgctt gcatgacggt gaatccgact
     4681 gctccgccta atgccgcttg tgggttgaaa gctgcgtgta caatagtaat aattgcttgt
     4741 gggacttttt ccatattcag tagaatgacg gataaagcgg cgatgacata cccaatagcc
     4801 ataaacggta caacaatggt tgcaatttta gaaatccgct gcacgccacc taaaataata
     4861 gcggtaacga taagggttaa aatgatcgca ctgaagataa tcggcacatc aaaggtgctt
     4921 tctaaggcgt gggtaatgcc attcacttgg gggaacgtgc caataccaag caaagcgacc
     4981 aatacgccaa aaaacgcaaa ggctttagca agccaacgcc atttttttcc cattcccagt
     5041 tcgatatagt acatcggacc accagccaca aatccggctc tatctttagt tcgatattta
     5101 attgccaata agccttcggc atatttcgta gccataccga ataaggcaat cagccacatc
     5161 caaaataatg ctccaggccc gcccgaatga atagcggttg ccacgccgac aatattcccc
     5221 gtgccgatag tagctgctag ggcagtggaa agggctgcaa aagcggaaat atcgcccgat
     5281 tgccctttgc ctttttccgg tttgaacata tagcgaaagg cttgccctag ttggcttaat
     5341 tgaatacctt tgagtgaaaa ggttaaatat aaccctacgc ctgaaattaa aatcaggagt
     5401 ggcgggcccc aaacaaaact gttgatttga ttaagaatag tgtcgataga catttgatgt
     5461 tcctcgtaaa aactgcttac aaggaaagaa aaggaatgca agagacaagc ggtcaaaaaa
     5521 cggaaatttt ttgcaaagaa ttagcaaaaa aacaccgctt gtatcgtata acttttctcc
     5581 cctgtccttt tgcctgagcg tttcacacat tgctgtattt tcgccttcgg cggcggattt
     5641 taatccgctc tctccaaggg ttcgtccagt aacagtcccc gcagtgttca ctgcacctga
     5701 aagagtttac ctcgtcggtg aaatgttaat tcatttctct ccagctacct tcatccgaac
     5761 aatctaattt attttataat gtaaaataaa aaagatttgc caaattctag caactctttt
     5821 gcttccgtca agtgaattta acgatatttt tgttctttcg gtacttcttc taaatcgcta
     5881 aataatacgg catatttttg ggtggcttta ttggattcta atgccacttt acacgccatc
     5941 gtaagtggaa cagaaagtaa cattcctacg gtgccaagta accaccccca aaatagaagt
     6001 gagaggaaca ctacaagggt agaaagcccg agtttcttgc ccattaattt aggttcaagc
     6061 gcattaccca caaccatatt aatcacgaca atgccgatta aagtgcctaa tcctatagaa
     6121 aagccattga gtaccaaggc ttgaatcaca attggaattc ccgccaaaat agagccgata
     6181 ttcgggacgt agttaagcag gaaggttaga attgcccata aaatcgcata ttctacgcct
     6241 agaatttcta gtaagatcca aactaaccct ccggtgagta ggctcacaaa ggttttaact
     6301 ccaaggtaac caatcacccc ttcaagtact tggttgatat actctttttc gttgcttaaa
     6361 tcatcatctg ggctaagtgc gagggctaat ttatatttgg caaccggcat ttccaatagc
     6421 ataaaaatga cgactaagaa aatcacaaaa atattcgata atgcaccgga tagccccatt
     6481 agcagtttgc tgaccaaatt cattattgag cttgggtcaa atttgctcat aatctcttct
     6541 tgtgagaggg taagtggaat atgccatcta tgggcgagtt ctagaatcac ctggattcta
     6601 gatgaaagct gaattttgta ttgcggaata gcattagtaa attcttgcaa ggtgttatta
     6661 ataatgcctg ctaagaaact gaatcctaag ataaaaacaa taagtaaaat ggtaatggct
     6721 aaccataatg gcactttacg cttagtcata aatttgatca ttggtgaaca aataatggca
     6781 ataaatagcg aaagtaaaaa tggcacaaca atttcattgg ataatttaat ccctgccaga
     6841 ataatgataa tggaggctat cgccacgaga gttttggtgg aatgtgtcat aatttttcct
     6901 tttacaagcg gttaaaaatc agcaattttt tacaaattag tgattctcaa accaactttc
     6961 taaaattaaa caagcggaaa tggaatccac tttatccttt tttaatgctt tgtaaccacc
     7021 acgagaaaaa atttccgctt ttgcttcaac agtagtgagg cgttcatctt gtagctcaac
     7081 cggcagatta aagcgtccgt ttaagcgatt ggcaaatttt ctggcacgct gagttaaagg
     7141 ctgctctgtg ccgtccatat tcaagggtag cccaacaacc agcatatctg gtttccaatc
     7201 ttgcaagagt tttccgatct cttcccagtt tggaataccg tcttgggctt taaatgtagt
     7261 taaaccttga gctgtgccgg taatactttg tccaactgca cagccgatgc tatttgtgcc
     7321 aaaatcaaag gcaatcacgg tttttgttgt ggtttctgtc attaagctct cccagctctt
     7381 gacggtatgc ttgaaagccc catcatttca taggcttctg cccaacgctc taaataaccg
     7441 gtttcaaaca gcgttttttc attcgcatca gacacaatcc aataattttg agcaatttct
     7501 tgctcaagct ggctgccacg ccaagtggaa caacctaaac acacaataaa tttttcaggt
     7561 gaagccagtg tgccaaagga gtctaacaca tcaccggagg tagtgagcgt aattttatcg
     7621 gtgatcggat aagtgtgaat aaaatcattg gcggttttgg tgtgaataat aaagccacga
     7681 tcttgattta ccggcccacc gcttaacacc atttggtctt ttttgtaatc acgctggttc
     7741 gccatttgga aatccattcg ggtaatcagc tctagaaccg acagatcggt aggagtgtta
     7801 attactactc ccattgcacc ttgcggatta tgttcgcaaa tatagaccac cgtacgctcg
     7861 aaatagtcat cgtccatttc cggcgtggca attaaaaatt taccttgtaa attctctaac
     7921 attaaatatc tccaaaacaa acttgtaacg cagtaattgc cgcaagtgag gcggtttctg
     7981 tgcgtaacac tcgtttaccc agtaatactt cagtaaaacc ttcgctctcg gtcatggcga
     8041 tttcttcggc agataatccg ccctcagagc caatcagtaa acgaacacca gctttcggca
     8101 cattcggcag ttcacgaatg gtatatttgg ctcttgggtg caaattcagt ttcaacatat
     8161 cgtcttgttc tttgcaccag tcggtgagtt tcataatcgg gcgaatttca gggatttcat
     8221 ttcgtccgca ttgttcacag gcggcaatcg caattttctg ccattgctgt aattttttat
     8281 cttgccgttc atcattgagt ttcacgccac aacgttccga ccaaagtggg gtaatagttt
     8341 ttacccccag ctccaccgat ttttgaatgg taaattccat tctatcgcct cgggaaatca
     8401 cttgccctaa atggatcggc aggttggatt ctcggtcatc taattcactt gaatcaattt
     8461 ttgcaataat ttgctttttt tcgaccgctt gtaacgtagc gtggaaaacg tggtttgaac
     8521 catcaaataa aatgatttgc tctccttgtt tcattcgtag cactcgccca acgtggttag
     8581 cggcatcttc acttaacacg caactttgaa gaccagctaa cggctgtggt tggtaaattc
     8641 ttgggattct cataattatc tagttataaa ttaaaggcag acgattgtct gccataggta
     8701 agttaaaacg ggttaaggat aaagtcttga acaatgcaca atagtaataa tcgaaatttc
     8761 attctcttta acttcacaca ctattctata gccgttatga tatagttctc tcgtattaat
     8821 aattgcacct tttacaccca ttgtaggaaa aatggctaaa ttattaatac tattttccaa
     8881 ttcttctagt atcctaattc cactacttgc ataaccggta aattcactaa ctgagatggc
     8941 aatattctct aaatctatta aggcctcttc agtataataa atattatgca acttttttgg
     9001 cattttcagc acctctaaaa gcggcagcaa taactctttt tctgacctct tcgggtgaat
     9061 aaatccgacc gtttttaata tcttcctttc cttgctttac ttttttagca agataatcaa
     9121 gatattcttg gctaacatta tgataaggat tattcatatt tttcctccct gcgatgagtc
     9181 tctattgtgg gggctactga tcgtttaatc aagttaattt atcttatttt tcgagccaca
     9241 tcacaaaacg agaaaacaac aagcggtcat ttttccacgt tttttgcaaa aaatcgaaga
     9301 aagatgaccg cttgccagaa aaaattaatt atttgaactg gtgaattgca ttggcgattt
     9361 cattatcgtt gtaaatagct ttcaccacat cagaataggc ttggtctaac actttcttga
     9421 tttcatcatt gcttgcacca aatgcacctt cgtaaccacg ggtagcgttg aagtttttgc
     9481 taaagtttcc tttagaacct tgcactgcca cttttacact cacttgtgca tcggctttgt
     9541 agcgtaagtt tccttgttct actgtggcaa agaatttacg aatattcact accacattgg
     9601 cattcgctgc accttgtaca atttggaaac cttttgcatt caggtcttgt tggacggctt
     9661 gttggaacat tgcagcaact tcaggcactg cggttaaacg aatgacctct ccgtttttag
     9721 tgtagcttgc gatttcacgc gaggtgcgta aatcttgtgt cattacattc accgcagccg
     9781 tttgattgtt tgtgttaaat acagcagttg gcgttggggt agagaatgtt aatgtgttgg
     9841 attggctttg gcagccggct agtaatgcgg caacaaaagt agtggctaac actaacgttt
     9901 ttttagagcg tttcatagta aatccttcta tattgaataa atttcgagaa aatttctgct
     9961 tagtatagta ttatttcgtt ttgattttca atgaacgaga gcaaaaaatg tcggtagaac
    10021 agacaattat tcaaaaaatt aagacagaat ttcagccgat tttctttaat gtcgaaaacg
    10081 aaagctatat gcacagctca ggtagaggag cagaatcgca ttttaaatta actttggtgt
    10141 cagataaatt tgaagggcag agaacagttg cacgtcatcg tgctgtctat gcttgcttag
    10201 ctgaggaatt agctaatggc gttcacgcac ttgctttgca cctatatacc caaggtgaat
    10261 gggaagcgac tggcggactt gtacctaaat cgctaaattg cttaggtgtt gggcaataag
    10321 tggataaaaa tgatttattt tattttgtga agaaaatact tgaaagagcc gtgtaaaatt
    10381 gctatattta cgccatcttt ttgttgattc ggtgagatgt ccgagtggtt gaaggagcac
    10441 gcctggaaag cgtgtatatg ggaaactgta tcgggggttc gaatccccct ctcaccgcca
    10501 ttcatactga aagattcctt actgttttca tagatatttc cttggttaag ttaaagtaga
    10561 taatactttt tcatttttag gttatccccg agcaaacatt gcttgggggt ttttttatgc
    10621 gatcggcgat agattacaaa gaaaaaggat tcctaagaat cctttttatc tgcttttaac
    10681 gtactttacc tagtttatag ttattgctgt tttttaccgt gttgccattt gggtcgcaaa
    10741 gttcaacgtg ttgttcagac acttggaagg caagattgcc tgatgctttt tccagacgaa
    10801 tcacatttgg cttattgggt tcccaactgt atgtgccttt gtctcggtaa gtgtattctt
    10861 ttttatcttt aaaatatacc gtatcatatt ggtaggtttt atctgcattt aaggttagct
    10921 gggcttggat tttctcacag tcagcacacg gtaattcacc tgcataagta ccgctaacgc
    10981 ttttttgtgg tagcaatgag caagccccta gcattgcggt ggtaaaacca atgagtgcga
    11041 tttttttcat actattttcc tcttcaaaat taaattatgt aacactcgga tttactctaa
    11101 attcaagttg ggttatttca ggtaaatcgg tttgtatctg ttttagtaac atattttgtt
    11161 gcaagattaa accttgccgt acggttgcat tcttaacgct cacaataagc tgattatcaa
    11221 ctaaattcac tactcggtaa agcccacgat aagattctgg ccatcttttc tgaatttttt
    11281 ggtttaaatc gttaatgaag tttgcttttt cgacaatacg gcttaagctt gagttctgta
    11341 aaatgtcatt aatcttttta ggtgctgaat ttttcatctg tttctttaca tttcgtctta
    11401 ttttaggctt gattttacga tacttgaccc aataatttac tcattcggct ttactttagc
    11461 gtataattag cccaattttt tcatttatct taatttaatg agcttatttt taaaacactt
    11521 tcatcgaacg cctttttggt cgcaactctt tttgggaatg gttgcgatac ttgctttacc
    11581 tgaaattcag gttgcgtacg ccaatgaaag tgaacaggaa accgttctta atcaatcttt
    11641 tcttcaatat gctcaatccg ctaatgatat tgagcaacaa tcgcttttta ttgcagagtt
    11701 aatccataaa attgtggaaa ttaaaccaca agcggtgcat ttttgcgaat tttttgcaaa
    11761 ctcctaccgc ttggatagac aaaatgctta ccccattcga gccgggccac aaacctaaat
    11821 ataatttaat tttaccatta attgattaac ccatttttat atttaggaat aacacaatga
    11881 tttcaaaatt actgacttct atttttggct caagcaacga tcgcacttta aaacgtttaa
    11941 gaaagcgagt ggcacaaatt aataagcttg aaccaacctt cgagcaatta tctgatgagg
    12001 cgttaaagga taaaacagcg gagtttaagc aacgccttgc agatggtgta tcgctagata
    12061 gcctattacc tgaagctttt gcgacagtga gagaagcaag caaacgagta ttaggtatgc
    12121 gaccatttga tgtacagctg atcggcggta tggtgctaac ggggcgtaat attgcagaaa
    12181 tgcgtactgg ggaaggtaaa accctaactg caactttatc ttgttatttg aatgctttga
    12241 ccggtaaagg tgttcatgtt gttacggtga atgattacct cgcccgccgt gatgcggaaa
    12301 ccaaccgtcc gttatttgag tttttaggct taaccgttgg agtgaatatt ccggggttac
    12361 cttccgatgc aaaacgtgct gcataccaag cagatattac ctattcgact aacagcgaat
    12421 taggttttga ttacttgcgt gataacttag ctcacgataa aaacgaacgt ttccaacgtg
    12481 agttacacta cgcattagtt gatgaagtag actctatttt aattgatgaa gctcgtacgc
    12541 cgttaattat ttcagggcct gcggaagatg cgacccaaat ttatcaagcg gtagatcaaa
    12601 tcattccgca tttgattgct caagataaag aagacagtga agagtacacc ggtgagggcg
    12661 attttacctt agatctgaaa aacaaacagg ctcatttaac cgagcgtggt atggtgaaag
    12721 tagaggattt cttaactcaa atggggttaa tggaagaggg cgaaagttta tatcaccctg
    12781 ctcgtatttc gctgttacac catgtgagtg cagcattgcg tgcccataaa ttatttgaac
    12841 gcaacgtaga ttacattgta aaagacggtg aaattgtgat tattgatgag cacaccggtc
    12901 gtacaatggc tggacgtcgt tggtctgacg gcttacacca agcgattgaa gctaaagagc
    12961 gtgtggctat tcagggcgaa aaccaaactg ttgcctcaat tacttaccaa aactatttcc
    13021 gtttgtacga aaaattagcc ggtatgactg gtacggcaga caccgaagcc tttgaattcc
    13081 agcaaattta tggcttaaat acggtggtga ttccaaccaa cagaccggtg atccgtgatg
    13141 accgtacaga cttaatgttt aaaagcgaag cggagaaatt tgcggcgatt attactgaaa
    13201 ttagagactg tatcgagcgt aaacagcctg ttttggttgg cacagcatcg gtggaaaaat
    13261 cagagttatt atcggcagaa ttaaccaaag ccggtattgc tcataacgta ttaaatgcga
    13321 aattccacgc tcaagaggct gaaattgtag cggaagcggg agctccgggg gcggttacta
    13381 tcgcaaccaa tatggctggt cgtggtacgg atattgtgct tggcggtaac tggaaaatgg
    13441 aagtagccaa gcttgagaac ccgacacaag aacaaattga tgcgattaaa gctgcgtggc
    13501 aagagcgtta tgacatcgta atgcaagccg gtggtttaca tattattggt acagaacgcc
    13561 acgaatcccg ccgtatcgac aaccagttgc gaggtcgttc tggtcgtcaa ggtgacccgg
    13621 ggtcatcacg tttctatctc tctttagatg atgccctaat gagaatttac ctcaatgaag
    13681 gtaaattaaa tatgatgcgt aaagccttta ccgaagaagg tgaagcgatg gagtctaaac
    13741 tgttaaccaa agtgattgcc tctgcacagg cgaaagtaga agcgcataac tttgatgggc
    13801 gtaagcattt attacaatat gatgatgttg ccaatgaaca gcgtaaagta atttacgaac
    13861 aacgcaatca tctattagaa acagataata ttgcctcaat gatcgaaagc attcgccaag
    13921 atgtatttga aagcacgatt aaccaatata ttccgcctca atctatcgag gaaatgtgga
    13981 atgtgccggg cttagaagag cgtttacgcc gtgaatttgg gttggattta ccgatttctc
    14041 actggcttga aactgaaaaa gacttgcacg aagagacttt gcgtgaacgt atcttaaata
    14101 ttgcgattgc agagtacaat gcgaaggaag aaatagtagg cgcagaggta atgcgtaatt
    14161 ttgaaaaagg tgtaatgcta caaaacttag atgagctttg gaaagagcat ctagcctcaa
    14221 tggattattt acgcaaaggt attcacttgc gtggttatgc acaaaaagat ccgaagcaag
    14281 agtataaaaa ggaatctttt gcgatgttta ccaatatgct tgatacctta aaattgaatg
    14341 taattagcat tttaagccgt attcaagtgc gtagcaaaga agaggtggaa gaagcgcaac
    14401 gccagcaagc tgaaatggac gctgcaagta cgccagttac acaagctacc gattctgctg
    14461 ctggtagtag agaagaaaat agcgcagaga gcttaagtga agaagagttg gcaaacttaa
    14521 atattggtcg aaatgaccct tgcccttgtg gttcgggcaa aaaatataag cattgccatg
    14581 gtaacaaagc gagatattcg taattaacaa gcggtcatat tcagtcagga atttgcaaat
    14641 tttctgctta atatgaccgc ttgaatttat agaaagagtg aaggaaacta tgtcaaaacc
    14701 gattattcaa gtctcagcag ggattattcg taacgaattt gggcaaattt acttaaccca
    14761 acgtttagaa gggcaagatt ttgctcagtc tcttgaattt cccgggggga aagtcgatcc
    14821 caatgaaacc cctgaagaag cactaaaacg agaattagaa gaagaaattg gtattcaagt
    14881 gttaagcgct tttccgtatg aaaatttttg ctttgaatat ccaacaaaaa tcattgaatt
    14941 tttcttttat ttggtggaag agtgggtaaa tgaaccttac ggaagagaag ggcaagaagg
    15001 tttttggatc gcacaatcgg atttagatga gggagctttc ccaccggcaa atgcccaatt
    15061 aattaaacgc ttaaaagaac acgcataatt tgtattgaga actgtatcta aagtaa
//
LOCUS       DANMBQ010000056        15096 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.056, whole genome shotgun sequence.
ACCESSION   DANMBQ010000056 DANMBQ010000000
VERSION     DANMBQ010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15096
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.056"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            54..311
                     /locus_tag="PXE92_001398"
     CDS             54..311
                     /locus_tag="PXE92_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5760647.1"
                     /translation="MKNLRLSIHSSEHIWLRELFLKRRLELGLTQRTLGEKMGVLYSF
                     IGKVETGDRRLDIFEFIAYCKGLDLDPLSVLQEIEQQFPHK"
     gene            complement(358..978)
                     /locus_tag="PXE92_001399"
     CDS             complement(358..978)
                     /locus_tag="PXE92_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HDL5760648.1"
                     /translation="MKLWYSTTSPFARKALAVIKHHQLDDKVEMLRVTKAMDPNSPHN
                     QDNPLGRIPALQRNCGRWLFGSLLISEYLDQKGNNTPLLPKEGKPRWAVLALHNLADG
                     IMENTMPTLLQERMARPENEWWVSRHEQLMERNIRSFRQLEEALQEFGTELNLGTLTA
                     VALIDWWAFRLDKIGYDLAKNYPNLTAWAEEMNNKYAILAETKPSM"
     gene            complement(980..1633)
                     /locus_tag="PXE92_001400"
     CDS             complement(980..1633)
                     /locus_tag="PXE92_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01621 family pseudouridine synthase"
                     /protein_id="HDL5760649.1"
                     /translation="MTPTLPICYQHRDFIIINKPEGLSVHKDEAEIGLTELVARQLNV
                     KQVWLVHRLDKITSGLLILALNKEAAARFYHLFEQHKIYKTYWALSDKKPKKKQGRIV
                     GDMQKSRNGAWKLCHSKENPAVTQFISHSVEDSLRHFILQPKTGKTHQLRVAMKSLGS
                     PILGDKLYSGSQADRVYLHAYQLDFEYENEKISVQALPTSGHFWQKICKSNHIKHGE"
     gene            1682..2341
                     /locus_tag="PXE92_001401"
     CDS             1682..2341
                     /locus_tag="PXE92_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDL5760650.1"
                     /translation="MAVTIYLVRHGRTVWNLEGRLQGSGDSALVEEGIIGAKKTGIAL
                     KHIPFTAAYSSMQKRAQDTANYILAENERSNIPHFHHKGLNEFDFGSWEGMKSVDLQE
                     NDEYWVMKRTPAEYLAKANGGERFEQLYQRVTQAFNQIAELHQNDGKVLIVSHGMTLT
                     LLTAVLKGIAWQDFRNEEKHSFVFNTAITKVEVENGKVTVLEFNNTDHLDNVPTSQYK
                     R"
     gene            complement(2378..3424)
                     /locus_tag="PXE92_001402"
     CDS             complement(2378..3424)
                     /locus_tag="PXE92_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HDL5760651.1"
                     /translation="MSKQIFNEEELKTTEHFEPKQEFDLENAIIEEEEKAVEAELIIE
                     ESLKPSRFWIRVLLATLALFGVAVIAQSIQWLIDTFQQREWIYFAFSIVFFIVSLLGV
                     GAIISEWRKLVYLRNHQKNQQMSNQLLLEQLPSNDGEQAVKFCENIANQLNHLPSIAQ
                     AEQLWKSELNEAYNAKEVLYLFSENVLKPIDKQVKQMISRNAAENAVIVAVSPLAIVD
                     VLLMAARNIALVNKITKAYGMELGYISRLKLFKMVLKNMVFAGATEIATDVGMDFFSQ
                     NLTAKLSLRAAQGIGVGLLTARLGIKAMEFCRPVAFQANEKPRISAIRQELLTSVKNT
                     VFAKTETKEKVFSD"
     gene            complement(3424..4377)
                     /gene="dusC"
                     /locus_tag="PXE92_001403"
     CDS             complement(3424..4377)
                     /gene="dusC"
                     /locus_tag="PXE92_001403"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
                     /protein_id="HDL5760652.1"
                     /translation="MNPIPNVILAPMQGVLDPFVRNLLTSVNDYDLCISEFVRVVDQR
                     LPKKTFYRLAPELYQGGLTDSGTPVRVQLLGQHPQWLAENAALAIELGSHGVDLNCGC
                     PSKTVNGSNGGASLLKDPELIYRATKAMREAVPSDKIVSVKVRLGWDSVSQCFEIADA
                     VEQGGANEITVHGRTKVDGYRAERINWQAIGEIQQRLSIPVIANGEIWDFESAKNCQK
                     ITACKALMMGRGALNTPNLSKVVKYNVPKMAWNEVLQLLFKYVQMENQFDTGFYHVAR
                     IKQWLRYLDKEYPQAVELFDILKTEHGYDGLKAHIEKAVEE"
     gene            complement(4455..5081)
                     /locus_tag="PXE92_001404"
     CDS             complement(4455..5081)
                     /locus_tag="PXE92_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HDL5760653.1"
                     /translation="MDSRSHIIPLFLAIVITVIAVWSGLNPTDRAVWYAEVIPIFIVF
                     ALLIITYPKFQFSGLAYFLMSLWLIMHLIGAKYTFANVPFEWANQFLTPILGEDRNHF
                     DRVAHYIIGFYSFPMAEWLLRKRKCGMGVAFFFSLFFIMSVAAAYEIIEWQYAVIEGG
                     NAGVEFLGSQGDIWDAQKDMLADTLGALTALMIYLIARPDLRIHDRHF"
     gene            complement(5081..5938)
                     /gene="djlA"
                     /locus_tag="PXE92_001405"
     CDS             complement(5081..5938)
                     /gene="djlA"
                     /locus_tag="PXE92_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HDL5760654.1"
                     /translation="MQFIGKIVGFFLGYQLFHGLFGGILGAFIGHLADKKLYELGSVR
                     SSLFGKNLTRQSLFTQTTFAVLGHIAKAKGRVTEADIELARALMARLKLDSAAQQLAQ
                     NAFTLGKEPDFPLRQVIQEFREACGARTDLLRFFVEVQMQAALQDGQLDVNEQQILFT
                     IAETMGMSRFQFEQMIAMIMAAQQFRNGGYYQQNGSYHQQSQGGYQGSYQQPAQPSIE
                     AAYTVLGVTAQDDQNTVKRAYRKLMNEHHPDKLAAKGLPDEMMELAKEKAQQIQAAYD
                     LICKVKEWK"
     gene            complement(5986..6696)
                     /locus_tag="PXE92_001406"
     CDS             complement(5986..6696)
                     /locus_tag="PXE92_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5760655.1"
                     /translation="MWKNRQLFFGYAENRLLLLSRSITGLLGILCGVYIIDHLVLSDV
                     DMIGKLTSFILIILSAIFLKERASLLQWILCLIAFIGALFIIKPAVDIRFMPYLVGVI
                     GSVFAAIAYLCLRLLAKTKKVESPNTIVFFFSAFSTLILLPFVAIDYVVLTNLQTIYL
                     VLAGVTSAVGQFCVTTAYKYAAAKDISIYSYASVLFSAILGLLFFEQYPDMLSWLGYA
                     IIFVSSWLMFVLTKKQSK"
     gene            complement(6711..6863)
                     /locus_tag="PXE92_001407"
     CDS             complement(6711..6863)
                     /locus_tag="PXE92_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760656.1"
                     /translation="MNFWNSLSPLFKAIFCVLLSALSFAIMAAFLRLSGDVPIAQKAI
                     FRNAQH"
     gene            complement(6932..7417)
                     /locus_tag="PXE92_001408"
     CDS             complement(6932..7417)
                     /locus_tag="PXE92_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL5760657.1"
                     /translation="MKKFAKVLMVAVPAFALAACSSSSDDAAANAAANAAANAAANAA
                     GEFGGLTAEQLKAQYNTVYFGFDSYAVEGEYRQLLDAHAQLLAKTQGNVTIAGHADER
                     GTPEYNIALGQRRADAVKGYLAAKGANNTSTVSYGEEKPAVLGHSEADYAKNRRAVLE
                     Y"
     gene            complement(7444..8730)
                     /gene="tolB"
                     /locus_tag="PXE92_001409"
     CDS             complement(7444..8730)
                     /gene="tolB"
                     /locus_tag="PXE92_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HDL5760658.1"
                     /translation="MKLFSRISGVIGIFSALLTTQVVADSDVRISIDEGVSMAQPIAV
                     VPFKASGVPADVAQIISDDLRNSGKFTPLERSQMPAQPGSAAEVVADQWSAIGIDNIV
                     VGQVSSTGGGYNVAYQLIDTLGTSGTAGGVIAQGSFIVPAAQIRQGAHTVSDEVFEKL
                     TQIRGAFRTKIAYVVQRGVSSYELRVSDYDGFNAFTITTSKEPLMSPEWSPDGSRLAY
                     VTFENKKAQVVVHDIRSGARRVVAALKGHNGAPSFSPDGSRIAFASNQDGELNIYVVG
                     SGGGTPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPMGGSGS
                     YNAKVSSDGKNLIMIAGDRVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKG
                     TSKVLQLVSADGRFKANLPGAGGHYKFPAWSPYLTK"
     gene            complement(8746..9969)
                     /gene="tolA"
                     /locus_tag="PXE92_001410"
     CDS             complement(8746..9969)
                     /gene="tolA"
                     /locus_tag="PXE92_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HDL5760659.1"
                     /translation="MKSQQDRLELAVIVSILLHILLIGLLLLGSLFTKTELAAAGGSG
                     GDSDSFEAVMVDTGQVAAEYGQLLAEKKGSKASKPKVEPKEEAVEEDVEDKPTPEEIQ
                     KQKQAELAAIQEKQRQQEIERQQKLQEQQKQEQAKQEELKKQQAEEATRKKAAEAAKL
                     KADAEAKRLEAAAKQAEEEKKAKEALEKKLEQQKKAEAEKKLKEQKELKEQQAKEAKE
                     AKEKAEKEAKAKAEKEAKEKAEKEAKAKAEKEAKEKAEKEAKAKAAAEAKAAQAKNNK
                     ALDDFLNSGDIGGGSSKGGNKNSAGSQGSGGTSGLGQGTNVDGNAYGQRIKKLIQSRY
                     RVDPSFAGKQCDVKIFLSRDGTITNYQVISGDKAVCDAAVSAIVATRKVPPAPSDAVY
                     NMFKSPTLDFSLKVK"
     gene            complement(9983..10420)
                     /gene="tolR"
                     /locus_tag="PXE92_001411"
     CDS             complement(9983..10420)
                     /gene="tolR"
                     /locus_tag="PXE92_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HDL5760660.1"
                     /translation="MSRRLKRNDIKSEINIVPFLDVLLVLLLIFMATAPIISQSVEVN
                     LPEDTHSQSVSNEDKTPVILEVAGVGEYKLKIDGNYVQSNGQENINESEVVAYAGEQF
                     QKDNNTLFLVAGDKVVPYEEIMKGITLLKDAGVKSVGLMTEGK"
     gene            complement(10562..11242)
                     /gene="tolQ"
                     /locus_tag="PXE92_001412"
     CDS             complement(10562..11242)
                     /gene="tolQ"
                     /locus_tag="PXE92_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HDL5760661.1"
                     /translation="MQTEFSLLSLFLEASIVVKIVMLILIVFSILSWAVIIQRSKILT
                     KAKKDSLAFEDRFWSGEDLNRLHQGLENRRDALNGSEQIFYVGFKEFTRLQQANPDAP
                     ESIIQGSTRAMNLALNREMESLENYIPFLGTVGSISPYIGLFGTVWGIMHSFMGLSAV
                     KQATLQSVAPGIAEALIATAIGLFAAIPAVMAYNRLNLRLGKVEQGYVNFIDEFTTLL
                     HRQAFSKR"
     gene            complement(11264..11665)
                     /gene="ybgC"
                     /locus_tag="PXE92_001413"
     CDS             complement(11264..11665)
                     /gene="ybgC"
                     /locus_tag="PXE92_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HDL5760662.1"
                     /translation="MDFPIRVYYEDTDAGGVVYHSNYLNFFERARTEFLRQQHFSQQE
                     LFSQSLAFVVKRIEIDYKLPARLDDLLNVETTLSELKKATLIFKQRLWKDGDCLSEAN
                     VTVACVDLIKMKPVAIPDDIRQALQKSYFSI"
     gene            complement(11828..12115)
                     /gene="ybgE"
                     /locus_tag="PXE92_001414"
     CDS             complement(11828..12115)
                     /gene="ybgE"
                     /locus_tag="PXE92_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HDL5760663.1"
                     /translation="MIHKLYNLTAKGLLKALSFILAAVLFATIWVNSTAFALSFGGKT
                     PYLAMLVFYGMAILWVHGIGFEIRAAIWKVIFLPLLGYLIVIPALWILLVK"
     gene            complement(12115..12213)
                     /locus_tag="PXE92_001415"
     CDS             complement(12115..12213)
                     /locus_tag="PXE92_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CydX/CbdX family cytochrome bd oxidase small
                     subunit"
                     /protein_id="HDL5760664.1"
                     /translation="MFYVTWVLGVLLAIFFATVITISIEKTGKFDE"
     gene            complement(12228..13361)
                     /gene="cydB"
                     /locus_tag="PXE92_001416"
     CDS             complement(12228..13361)
                     /gene="cydB"
                     /locus_tag="PXE92_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDL5760665.1"
                     /translation="MIDYEILRFIWWILIAVLLIGFAITDGFDMGVLNLLPIIGKSNV
                     ERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPTVYATSFSGFYIAMVLVLAALFFRPV
                     GFEYRAKIDNPKWRSAWDWGLFIGGFVPSLVFGVAFGNLLQGVPFEFNNINQSQYTGS
                     FFGLLNPFALVCGIISLMMLTTQGATWLQMKTTDELHNNSRKVAQVTASIVLVAFILA
                     GVWLYFKDGFVITSELDHNAQSLLTNKTVAVQAGAWFRNYAEMPVLWVVPALVVVGAL
                     LTIIASKANRSGLAFFSSSLMIVGVILTAAVSMFPFIMPSITHPEMSLTVWDATASHT
                     TLTVMLFVAGIFVPLVLAYTIWSYIKMYGRLDASYLEENKAAY"
     gene            complement(13374..14924)
                     /locus_tag="PXE92_001417"
     CDS             complement(13374..14924)
                     /locus_tag="PXE92_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDL5760666.1"
                     /translation="MLDVVELSRLQFALTALYHFLFVPLTLGLSFVLVVMETLYVTTG
                     KEVYKDMTKFWGKLFGINFALGVTTGITMEFQFGMNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWERLSKAKHLLATYCVAFGSNFSALWILVANGWMQNPIASEFN
                     FETMRMELSSFSELVLNPVTQSKFLHTVTAGYVCGAIFVLGISSYYILKGRDLGFAKR
                     SFSVGASFGLIAIISVLIMGDESGYEIGKAQPTKLAAMEGEFETQPAPAAWNAFVIPN
                     TAEMKNEFSIHIPYAAGIIATRSLDKEIKGLKDIRVINEQRVRTGMVAYGLLEKLRSG
                     NYTEADKEAFKAVQKDLGFGLLLKQYTPNVVDATEEQIQKAADNTIPNVGPTFWAFRV
                     MMLSGFLMLILITTAFIQNMRGKVESSRFLLRGLLFGLPLPWIAIESGWFLAEYGRQP
                     WAIYEMLPVGVSNSALTTGDLWFTIGLLCGLYTLFLVVEMYLMFKYGRLGPSALKTGR
                     YYFEQSTK"
BASE COUNT         4606 a         3314 c         2673 g         4503 t
ORIGIN      
        1 tatataatga acctaaaaaa ggttcaacat tatttgtacc taatataggt gcaatgaaaa
       61 atcttagatt atcaatacat tccagcgagc atatttggtt aagagaacta ttcttaaaac
      121 gccgtttgga actagggcta acacaacgca cattaggaga aaaaatgggc gttctttact
      181 catttatcgg aaaagtagaa acaggagatc gcagattaga tatttttgaa tttatcgctt
      241 attgcaaagg gttagattta gatcctttat ctgtattgca agaaattgaa caacaatttc
      301 ctcataaata aaggcattga gttataactc aatgccttta ttttctatgt caaatctcta
      361 catgctcggc ttagtctctg ccagaatggc gtatttatta ttcatttcct ctgcccaagc
      421 ggttaaattt gggtaatttt ttgcaagatc gtagcctatc ttatctaagc ggaatgccca
      481 ccagtcaatt aatgctactg cggttaatgt gcctaaattc agctctgtgc caaactcttg
      541 caatgcctct tctaattgtc tgaacgaacg gatattgcgt tccattaatt gctcgtggcg
      601 gctgacccac cattcattct cggggcgagc catacgttct tgtaataaag ttggcatcgt
      661 attttccata atgccgtccg ccaaattatg taatgccaac actgcccagc gaggtttacc
      721 ctctttaggt aacagtggag tgttattgcc tttttggtca agatattcgc taattaacaa
      781 actaccgaaa agccaacgtc cgcagttgcg ttgtagggca ggaatacgtc ctaacgggtt
      841 atcttgatta tgtggcgaat ttggatccat tgcttttgtc acccgcaaca tttcgacttt
      901 atcgtctaat tggtggtgtt taatcaccgc aagggctttg cgggcgaaag ggctggtggt
      961 tgagtaccaa agtttcatac tattctccgt gtttgatgtg attggatttg caaatttttt
     1021 gccaaaaatg accgcttgtc ggcaaggctt gcactgagat tttctcattt tcgtattcaa
     1081 aatcaagctg ataagcgtgc aaataaacac ggtcggcttg gctacctgaa tagagtttat
     1141 cacctaaaat cgggctgccc aaacttttca ttgccactct taattggtga gttttgcctg
     1201 ttttgggttg caaaataaaa tgcctgagcg agtcttcaac agaatgagaa ataaattgcg
     1261 ttactgccgg gttttcctta ctgtggcata atttccacgc tccatttctg cttttttgca
     1321 tatcgccaac aattctaccc tgctttttct tcggcttttt atcgcttaat gcccaatagg
     1381 ttttgtagat tttatgctgt tcaaataaat ggtaaaacct tgctgccgcc tctttattca
     1441 acgctaaaat cagtaaacct gaggtgattt tatccagacg gtgaaccagc caaacctgct
     1501 ttacattcag ttggcgagcc actaattccg ttaagccgat ttcagcctca tctttatgca
     1561 cactcaagcc ttccggctta ttgataataa taaaatcacg atgttgataa caaataggca
     1621 atgttggggt cattttgcta taatccttcc aatttttgac tattttagca aggaaattac
     1681 aatggctgtt accatttatt tagtacgaca cggcagaacc gtgtggaatt tggaaggcag
     1741 attacaaggc tcgggcgatt ccgctttagt agaagaaggg attatcggag cgaagaaaac
     1801 cggcattgcg ttaaaacata ttccgtttac cgccgcctat tccagtatgc agaaacgggc
     1861 tcaagatacc gcaaactaca ttttagcaga aaatgaacgc agtaatattc cgcattttca
     1921 tcataaaggc ttgaatgaat ttgattttgg cagctgggaa ggaatgaaat ctgtcgattt
     1981 gcaagaaaat gatgaatatt gggtgatgaa acgtacaccg gcagaatatc tggcaaaagc
     2041 aaacggtggc gagcgatttg agcaacttta tcaacgggtg actcaggcgt tcaatcaaat
     2101 cgccgagcta caccaaaatg acggcaaagt gctgattgtt tcacatggta tgaccttaac
     2161 cttactcacg gctgtgttaa aaggcattgc gtggcaagat ttccgcaatg aagaaaaaca
     2221 tagctttgtg ttcaatactg ccattacgaa agtagaagta gagaatggca aagtaacggt
     2281 gctggaattt aataataccg accatttgga taatgtgcca acaagccaat acaaacgata
     2341 atattaaggg cggaacattg tccgcccata gcattttcta atcagagaac actttttctt
     2401 tcgtttctgt tttagcaaat accgtatttt tgaccgaagt aagcaactcc tgacgaatag
     2461 ctgaaattct tggcttctca ttcgcttgaa aagcaacagg acgacaaaat tccattgctt
     2521 taatgccaag gcgagcagtg agtaaaccca caccaatacc ttgtgcggca cggagcgata
     2581 atttcgccgt aaggttttgc gagaagaaat ccattccaac atcagtagcg atttcggttg
     2641 caccggcgaa caccatattt ttcagcacca ttttgaacag ttttaagcgg ctgatataac
     2701 ccaattccat tccataggct ttggtaattt tattcactaa agcgatattt cttgccgcca
     2761 ttaacaacac atcaactatt gccagcgggc taaccgccac aatcaccgca ttttctgccg
     2821 cattgcggga aatcatctgc ttaacctgtt tatctatcgg ctttagcaca ttttcgctaa
     2881 acagatatag tacctctttg gcattataag cctcgttcag ttcgcttttc caaagttgct
     2941 cggcttgagc aatgctcggc aagtgattaa gctgatttgc aatattttcg caaaatttga
     3001 ccgcttgttc gccatcattg gaaggcagct gttccagcaa taattggtta ctcatttgtt
     3061 gatttttctg atgatttcgc aaatacacca actttcgcca ttcggaaata atcgccccaa
     3121 cgcccaacaa gctgacaata aaaaagacta tcgagaacgc aaaatagatc cactctcttt
     3181 gctggaacgt atcaatcaac cactgaatac tttgagcaat taccgccacg ccaaacaagg
     3241 caagtgtggc aagtagtact cgaatccaaa agcgggaagg cttaaggctt tcttcaataa
     3301 tcagctccgc ctcaactgct ttttcctctt cttcaataat cgcattttcg agatcaaact
     3361 cttgtttagg ttcaaaatgc tcggttgttt ttagctcttc ttcattaaaa atttgcttac
     3421 tcattattcc tccactgcct tttcaatatg tgcttttaga ccatcatagc cgtgttcggt
     3481 tttcaagata tcaaataatt ctaccgcttg aggatattct ttatccaaat aacgtagcca
     3541 ttgtttgatg cgagcaacgt ggtaaaaacc ggtatcaaac tgattttcca tctgaacgta
     3601 cttaaacaat agctgtagca cttcattcca cgccattttc ggaacattat atttcaccac
     3661 tttgcttaaa ttcggtgtgt ttaacgcccc acgccccatc attaatgcct tgcaagcggt
     3721 tattttttgg caatttttcg ccgattcaaa atcccaaatt tcgccgttgg cgataacagg
     3781 aatagacagc cgttgttgaa tttcgccaat cgcctgccaa ttaattcttt ctgctcgata
     3841 accatcaact ttggttcgcc cgtgaacggt aatttcattc gctccgccct gttctaccgc
     3901 atcggcaatt tcaaaacatt ggctaacgga atcccaacct aatcgcactt ttacggaaac
     3961 gattttatcg cttggcacag cttcacgcat cgctttggtt gcacgataaa tcagttccgg
     4021 atcttttaat aacgaagccc caccattgct gccatttacc gttttagagg ggcagccaca
     4081 gttgagatct accccgtgtg aaccaagctc aatggcaaga gctgcatttt ctgccagcca
     4141 ctgtgggtgt tgccctaaaa gctgtacccg cactggtgtg ccggaatcgg ttaatccgcc
     4201 ttgatatagc tcaggggcta ggcgataaaa ggttttcttc ggtaaacgtt gatcgaccac
     4261 tcgcacaaat tcggaaatac agagatcgta gtcattcact gaagttaaaa ggttgcggac
     4321 aaaagggtct aaaacccctt gcatcggggc aagaataacg ttaggaattg gattcattgg
     4381 taaaataaaa aatacaagcg gttatttttt ctcaacattt tgcaaaaaat tggcaagaaa
     4441 caaccgcttg aaggttaaaa atgtctatcg tgaatgcgca aatcggggcg agcgatcagg
     4501 taaatcatca gtgcggttaa tgccccaaga gtatccgcaa gcatatcttt ttgagcgtcc
     4561 caaatatccc cttgcgagcc tagaaattcc acgccggcat tgccaccttc aatcacggca
     4621 tattgccatt caataatttc gtaagctgcc gccaccgaca taatgaaaaa cagcgagaag
     4681 aaaaatgcta cgcccattcc gcacttgcgt ttacgcagta accattctgc catcgggaag
     4741 ctgtaaaaac cgataatgta atgtgctact cgatcaaaat ggttacgatc ttcacctaaa
     4801 atcggggtta gaaattgatt tgcccactca aacggcacat tggcaaaggt atattttgcc
     4861 ccgatcaagt gcataatcag ccaaagcgac atcaaaaaat aagctaaccc actaaactga
     4921 aatttagggt aagtgataat taaaagggca aaaacgataa aaatcggtat cacttccgca
     4981 taccaaactg cgcggtctgt cggatttaac cctgaccaaa ccgcaatcac ggtaataaca
     5041 atcgctaaaa atagagggat gatatgcgag cgtgaatcca ttatttccac tctttcactt
     5101 tacaaattaa atcgtacgcc gcttgaattt gttgagcttt ctcttttgcc aactccatca
     5161 tctcatcagg caaaccttta gcggctaatt tatccgggtg atgttcgttc attaacttac
     5221 gataagcccg tttcactgta ttttgatcgt cttgtgcggt tacgcctaat acggtatagg
     5281 ctgcctcaat gcttggttgt gcaggctgct gataactgcc ctgatagcca ccttgagatt
     5341 gctgatgata actcccattt tgctgataat agccaccatt gcggaattgt tgagctgcca
     5401 taatcattgc gatcatctgc tcaaattgga agcgagacat tcccattgtt tcggcaatcg
     5461 taaacagaat ttgttgctcg ttcacatcaa gttgcccatc ttgcaaggct gcctgcattt
     5521 gcacttcgac aaagaaacgt aataagtcag ttcttgcccc acaggcttct ctgaactctt
     5581 gaatgacttg gcgtaacggg aagtcaggct ctttacctaa ggtaaaggca ttttgcgcta
     5641 attgctgggc tgcactatct aattttaagc gagccattaa cgctcgggct aattcaatat
     5701 ccgcttcagt aacacgccct tttgctttcg caatatgccc caacaccgca aaagtggttt
     5761 gggtgaaaag cgattggcga gttaaatttt taccgaaaag acttgaacga actgaaccta
     5821 attcatagag ttttttatcg gctaaatgcc cgataaaagc gccaagtatc ccaccaaata
     5881 aaccgtgaaa aagctgatag cccaagaaaa aaccgactat ttttccgata aattgcattt
     5941 ttttatcctt ttatagaaat gaataaacgt tattctaaca aaattttact ttgattgctt
     6001 tttagttaat acaaacataa gccagcttga gacaaaaata attgcataac ctagccaact
     6061 caacatatcc gggtattgtt caaagaacaa caaccctaaa attgcactaa atagcacaga
     6121 ggcataacta taaattgaga tgtctttcgc cgccgcatat ttataggcgg tagttacaca
     6181 aaactgcccg accgctgaag ttacccctgc taacactaag tagattgtct gtaaattggt
     6241 tagcactaca taatcaatgg cgacaaaagg caataatatc aaggtcgaaa aggcagaaaa
     6301 aaagaaaaca atggtattag gtgattctac ttttttggtt tttgccaata accttaagca
     6361 taaataggca atggctgcaa acacagagcc aatcacgcca accagataag gcataaagcg
     6421 aatatcaact gccggtttga taataaaaag tgccccgata aaggcaataa ggcataaaat
     6481 ccattgcagg agagatgctc tctcttttaa aaaaatcgca gaaagaataa ttaaaatgaa
     6541 cgacgtgagt ttgccaatca tatcgacatc acttagcaca aggtgatcga tgatatatac
     6601 accacataaa atccccaata acccggtgat ggaacggctt aataataaca aacgattttc
     6661 tgcataacca aagaataatt ggcgattttt ccacacaata taaccgctta tcaatgctgt
     6721 gcgttgcgaa aaatcgcttt ttgtgcaatc ggtacatccc ccgaaagacg aagaaaagca
     6781 gccataatcg caaagcttag tgccgacaaa agcacacaaa aaatggcttt aaataacggc
     6841 gagagcgaat tccaaaaatt catagcataa aggcttttaa taaaaataaa gccctgatta
     6901 ttcagggctt caatttagaa tcaactaaga attagtattc taatactgca cgacggtttt
     6961 tcgcgtagtc agcttctgag tgacctaata ctgctggttt ctcttcaccg taagaaacag
     7021 ttgaagtgtt gttagcacct ttagctgcta agtaaccttt aactgcatct gcgcgacgtt
     7081 gacctaatgc gatgttgtac tctggagtac cacgctcatc agcgtgacca gcaatagtta
     7141 cgttaccttg agtttttgct aataattgag cgtgagcgtc taataattga cggtattcac
     7201 cttcaactgc atagctgtca aaaccgaagt atacagtgtt gtattgtgct tttaattgtt
     7261 cagctgttaa accaccgaat tcgcctgctg catttgctgc tgcatttgct gctgcgtttg
     7321 ctgctgcgtt tgctgctgca tcatctgatg agctgctaca tgctgctaat gcgaaagctg
     7381 gtactgctac cattaatact ttagcaaatt ttttcatttg ttgctcctaa tagagaaata
     7441 ttattattta gttaagtatg gtgaccatgc agggaattta taatgtccac ctgcgccagg
     7501 caaattagct ttaaaacgcc catctgcaga caccaattgt agcactttac tcgtaccttt
     7561 ggtagagcta taaataacca taatgccatt cggtgaaata cttggacttt cgtctaagaa
     7621 agttgaactc agtacttctg tgccacctga agcgagatcg cgtttcacaa ctctatcacc
     7681 ggcaatcatg attaaattct taccatcaga tgatactttc gcattatagc taccgctacc
     7741 gcccattggg ctagcaccac cacctgatga actcattcta taaacttgag gagaacctgc
     7801 acggtcagac gtaaagtaga ttgtgctacc atctggagac cagcttggtt cagtattatt
     7861 tccagcatta gcggtcaatt tacttggtgt accaccgcca ctacctacaa cataaatatt
     7921 taactcacca tcttgatttg aggcaaacgc aatgcgagaa ccgtctggag agaatgatgg
     7981 cgcaccatta tgtcctttca atgctgccac tacacggcga gcacctgaac gaatatcgtg
     8041 aacaacaacc tgcgcttttt tattttcaaa tgtcacataa gctaatctgc taccatctgg
     8101 tgaccactct ggcgacatta aaggctcttt actggttgta atagtaaagg cattaaaacc
     8161 atcataatca gatactcgta attcatacga tgatacgcca cgttgaacca catacgcaat
     8221 tttagttcta aatgcaccgc gaatttgggt taatttttca aatacctcat cacttactgt
     8281 atgcgcacct tgacgaattt gggctgccgg aacaataaat gaaccttggg caatgacacc
     8341 acccgctgta cccgatgtac caagagtatc aattaattga taagcgacat tataaccgcc
     8401 acctgtgcta ctcacttggc caactacaat attatcaata ccgatagcac tccattgatc
     8461 tgccaccact tccgctgctg atcccggttg agcaggcatt tgagagcgtt caagcggtgt
     8521 aaatttacca ctatttcgca aatcatcaga aataatttgt gcaacatctg ccggcacacc
     8581 gctggcttta aatggcacaa ccgcaatcgg ctgagccata cttacacctt catcaataga
     8641 aattcgcaca tcagaatcag caaccacctg agttgtcaat aatgctgaaa agatgcctat
     8701 tacacccgat atacgagaga ataatttcat ttgtagtcct ctaaattatt taacttttaa
     8761 actaaaatca agtgttggtg atttaaacat attatatacc gcatctgatg gtgcaggtgg
     8821 tacttttcta gttgccacta ttgcacttac cgctgcatca catactgctt tatcgccact
     8881 gataacttga tagttagtaa ttgtgccatc tcgacttaag aatatcttaa catcacattg
     8941 ttttccggca aaacttggat caacccgata tcgagattga attaatttct taattcgttg
     9001 accatatgca ttaccatcta cattagtacc ttgccctaag ccacttgtac caccagaacc
     9061 ttgtgatcct gctgagtttt tgttaccacc tttacttgaa ccaccaccga tgtctccact
     9121 attgaggaaa tcatcaagtg ctttattgtt tttcgcttgg gcggcttttg cctcagcagc
     9181 tgccttcgct ttagcttctt tctcggcttt ctctttggct tctttttctg cttttgcttt
     9241 ggcttctttc tcagcctttt cttttgcttc tttttctgcc ttggctttag cttctttttc
     9301 tgctttttcc ttcgcttctt tagcttcttt tgcctgctgt tccttcagtt ctttttgctc
     9361 ttttaacttt ttctcagctt ccgctttctt ctgctgttca agcttctttt caagtgcttc
     9421 tttagctttt ttctcttctt cagcttgttt agcagcagcc tctaaacgct tagcttctgc
     9481 atctgctttc agttttgctg cttcagctgc ttttttacga gttgcttctt ctgcttgctg
     9541 ctttttaagc tcttcttgct tagcttgttc ttgcttttgc tgttcttgta gtttttgctg
     9601 acgctcaatt tcttgctgac gctgtttctc ttgaatcgcc gctaactcag cttgtttctg
     9661 tttttggatc tcttccggag tcggtttatc ttccacatct tcttcaacag cttcctcttt
     9721 aggctctacc tttggcttcg atgcttttga gccttttttc tctgccaata actgcccata
     9781 ttcagcagcc acttgcccag tatctaccat cacagcttca aagctatcgc tatcgccacc
     9841 actgccacca gccgcagcga gttccgtctt agtgaaaaga gacccgagca ataacaaccc
     9901 gattaacaat atatgcaata agatcgaaac aataaccgct agctctagtc tatcttgttg
     9961 agatttcaca cgttatcctt ggctatttac cttctgtcat taaacctacc gatttcactc
    10021 cggcgtcttt aagtagtgta atacctttca taatttcttc ataaggtact actttatcac
    10081 cggcaactaa aaataaggta ttgttatctt tttgaaattg ttcccctgca taggcaacaa
    10141 cttctgattc attaatattc tcttgcccat tactttgcac atagttaccg tcaattttca
    10201 atttatattc accaacacct gccacctcca aaatcactgg agttttatct tcattagaaa
    10261 ctgattggct atgcgtatct tccggtaaat taacttctac actttgactg ataattgggg
    10321 ccgttgccat aaaaatcagc aataatacca acaatacatc aagaaatgga acaatgttga
    10381 tttctgattt aatgtcatta cgttttaaac gacgagacat atattcctct ttacaggtgc
    10441 ttagcacctt aattgatctg aaataaccgg cacagtgtcc cggtctcgaa taatgcggtt
    10501 acaagcggtc ttttttacga aaaactttac aaattttcat taaaaatcaa ccgcttgtag
    10561 attatctttt tgaaaaagcc tgacggtgta ataaggtcgt gaactcatca atgaaattca
    10621 catacccttg ctcaacttta cctaaacgta aattcaaacg gttatatgcc attactgcag
    10681 gaatcgccgc aaataaaccg atagccgttg caattaatgc ttctgcaata cccggtgcga
    10741 ctgattgtaa agttgcttgc ttaactgcac ttaatcccat aaaggagtgc ataattcccc
    10801 aaaccgttcc gaataaacca atatatgggc tgattgaacc cactgtgcct aaaaacggaa
    10861 tgtagttttc taaactttcc atttcacggt ttaatgctaa gttcatcgca cgggtagaac
    10921 cttgaataat cgattctggc gcatctgggt tcgcttgttg taaacgggta aattctttaa
    10981 acccaacata aaagatttgc tctgaaccat ttaatgcatc acgacgattc tctaaacctt
    11041 ggtgtaaacg gtttagatct tcccctgacc agaatcgatc ttcaaaagca agggaatctt
    11101 ttttggcttt agttaaaatt ttgctgcgct gaataatcac cgcccaagac aaaattgaga
    11161 atacaataag gatcagcatc acgatcttta ccacaatact tgcttctaaa aataacgaaa
    11221 gaagactaaa ttcagtttgc attaataaaa ctccgaatag tttttaaata gaaaaataac
    11281 ttttttgtaa tgcttgacga atatcatcag gaattgcaac cggcttcatt ttgattaaat
    11341 caacacaagc gaccgtaaca tttgcctcac tcagacaatc gccatctttc cacaatcgtt
    11401 gtttaaagat aagggttgct ttcttcaatt ctgagagtgt tgtttccaca tttaataaat
    11461 catctaaacg agcagggagc ttataatcta tttcaatcct cttaacaaca aaagcaaggg
    11521 attggctaaa aagttcctgc tgtgagaaat gctgctgtct caaaaattcc gttcttgccc
    11581 gctcaaaaaa attcagatag ttggaatgat aaactactcc gccggcatca gtatcttcat
    11641 aataaacacg aatcgggaaa tccataagca ttatttctct cattcaaaat gaaaaaacgc
    11701 ccaaaattta ggcgcaaatt gtgagatatt ttaggatcag aaatattgtt atgcaagtat
    11761 attttttggt aaattgcaaa aatatttttt atctatcaaa aataaaaata gagacataaa
    11821 aatgcctcta tttaacaagt aaaatccata atgccggaat aacaataagg taacctagaa
    11881 gtggtaaaaa aatcactttc caaatagcag ctcggatttc aaatccaatt ccatgtaccc
    11941 ataaaatagc cataccataa aataccaaca ttgctaaata cggcgttttt ccaccaaaag
    12001 aaagagcgaa agcggtcgaa tttacccaaa tagttgcaaa taatacagcc gctaaaataa
    12061 aagaaagggc ttttaacaag ccctttgctg ttaagttata gagtttatga atcattactc
    12121 gtcaaactta cctgtttttt caatgctgat cgtgatgact gttgcaaaga agattgcaag
    12181 caatacacct aagacccaag ttacataaaa catattgtgt ctccttatta gtaagctgct
    12241 ttattttctt ctaaataact agcatctaaa cgaccataca ttttgatata tgaccaaata
    12301 gtatatgcta atactaacgg tacaaagata ccagcaacaa ataacattac agttaatgtt
    12361 gtgtggctag cagtagcgtc ccaaaccgtt aagctcattt ctggatgagt aattgacggc
    12421 ataatgaatg ggaacattga tactgcagca gttaaaatca ccccaacaat catcaatgat
    12481 gatgagaaga atgctaaacc tgaacgattt gcttttgagg caataatagt cagtaatgca
    12541 cctactacaa ctaatgcagg aacaacccat aatacaggca tttcagcata atttctaaac
    12601 catgcaccag cttgaaccgc tacagtttta ttcgtcaata gagattgtgc attatgatct
    12661 aactcgcttg tgatcacaaa accatcttta aaatataacc atacacctgc aagaataaat
    12721 gccactaata caatagaagc tgtcacttgt gccacttttc ttgagttgtt atgtagctca
    12781 tcagtagttt tcatttgtaa ccaagttgca ccctgtgtgg ttaacatcat taagctgata
    12841 ataccgcaca ctaatgcaaa tggatttaat aaaccaaaga atgaacccgt atattgtgat
    12901 tggttaatat tattaaattc aaatggtaca ccttgtaata agttaccgaa tgcaacaccg
    12961 aatactaatg atggaacgaa accaccaata aataatcccc aatcccaagc actacgccat
    13021 ttcggattat caatttttgc acgatactca aaacctacag ggcggaaaaa taatgctgca
    13081 agcacaagca ccattgcaat atagaaaccc gagaacgaag ttgcatagac tgttggccat
    13141 gcagcgaaga tcgcaccacc agcggtcaat aaccatactt ggttaccatc ccagtgaggg
    13201 gcaattgtgt tgatcataat acgacgttca acattacttt taccaatgat aggtaaaagg
    13261 tttaatacgc ccatatcaaa accatcagta attgcaaagc caattaacaa taccgcaatt
    13321 aagatccacc aaataaagcg gagaatttca taatcgatca tttctaactc ctattattta
    13381 gttgattgtt caaaataata acggcctgtt tttaatgcac tagggccaag acgaccatat
    13441 ttgaacatta aatacatttc tacaactaag aatagtgtat ataaaccaca caataagccg
    13501 attgtaaacc ataaatcacc tgttgttaat gcagagtttg acacaccgac aggtaacatt
    13561 tcatagatag cccaaggctg acggccatat tcggcaagga accaaccaga ttcaatcgca
    13621 atccaaggta acggaagacc gaataacaag cctcttaata agaaacggct actttctact
    13681 ttaccacgca tattttgaat aaatgctgtc gtaatcaaga taagcatcaa gaagccagat
    13741 aacatcatta cacggaatgc ccagaatgta gggcctacat ttggaattgt attatctgct
    13801 gctttttgaa tttgttcttc agtcgcatca accacattag gtgtatattg ttttaacaat
    13861 aacccaaagc ctaaatcttt ttgtacagct ttaaatgctt ctttatccgc ctctgtataa
    13921 ttgccagaac gtaatttttc taatagtccg taggctacca taccggtacg aacacgttgt
    13981 tcattaatta cacgaatatc ttttaggcct ttaatttctt tatctaaaga acgggttgca
    14041 ataataccag ctgcataagg aatatgaatt gagaattcat ttttcatttc cgcagtattt
    14101 ggaatcacaa aagcattcca agcagctgga gcaggctgag tttcgaattc accttccatt
    14161 gcagctaatt tagtcggctg agctttaccg atttcataac cagattcatc acccataatc
    14221 agtacagaga tgatcgcaat taaaccaaaa cttgcaccta ctgagaatga acgttttgca
    14281 aagcctaagt cacgaccttt taagatatag tatgaactaa tacctaatac aaaaatagca
    14341 ccacaaacat agcctgcggt tacagtatgt aagaatttag attgtgtaac tgggtttaat
    14401 acaagttcag agaaacttga aagctccatt cgcatggttt caaagttgaa ttcagaagca
    14461 atcgggtttt gcatccaacc attagcaact aaaatccata gtgcagagaa gttagaacca
    14521 aacgcaacac agtaagttgc taataaatgt ttcgctttcg ataaacgttc ccagccaaag
    14581 aagaacaagc ccacaaaggt agattctaag aagaacgcca ttaaaccttc aatcgctaat
    14641 ggagcgccaa aaatatcacc tacataatga gaataatatg accagttcat accaaactgg
    14701 aattccattg taataccagt tgttacccct agggcaaagt taataccaaa taatttaccc
    14761 cagaatttag tcatatcttt atatacttct ttacccgtag ttacatacag ggtttccatc
    14821 accacaagga cgaaagaaag acctaatgta agcggtacga ataagaagtg atagagtgca
    14881 gttagagcaa actgcaaacg tgagagttca actacatcta acatctcaaa cctcttatat
    14941 taatatacta atttgacaat tagattactg taaaagtaat cacccacaaa ttcactcaat
    15001 tctaataaat aacccaaatt ggttaatttt ataataaagt gtcgacgagt attctacctg
    15061 taaatagcta attaaaaaat agtaattttg ttatat
//
LOCUS       DANMBQ010000057        14687 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.057, whole genome shotgun sequence.
ACCESSION   DANMBQ010000057 DANMBQ010000000
VERSION     DANMBQ010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14687)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14687)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14687
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.057"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..588
                     /locus_tag="PXE92_001418"
     CDS             <1..588
                     /locus_tag="PXE92_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HDL5760667.1"
                     /translation="GDYLESSDAQIFRDKYQELEFKPNPDFNGPYYGLDFGFANDPTA
                     CVKCWVFDDDLYIEREAGKVRLELDETAAYLANALPDLSNYTVRADSARPESISYLKR
                     HGLPYIQPVPKWKGSVEDGVEHIKSYRKVYIHPSCTEVLKEFRLYSYKTDRLSGDVLP
                     IIIDAHNHYIDAIRYALNPLIQARGEAKQCALKVY"
     gene            601..2004
                     /locus_tag="PXE92_001419"
     CDS             601..2004
                     /locus_tag="PXE92_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4055 domain-containing protein"
                     /protein_id="HDL5760668.1"
                     /translation="MPNSISADFAALKAKTKIIDDLLGGTQKMRQAGQTYLYKMKMEE
                     EDGYKNRLNRSTLYPALRETLSQMLGRVFFNPINVEDVHKQIEPLFDDIDLEGNNLDV
                     FASRWFYAALAYGVSYCLVDFVRVENARSLAEEKAQNARPYLVHIKPQQVLGFKTAKI
                     NGKTAFTQFRYKETVTEDDGEFASKQVNYIYVYEIGRVRKYKNDEGGLSLVADMQIKA
                     QNTPLAFVPIVPFITKPIDVWGMGEPPLMELAYLNIKHWQSQSDQDNILNIARVPLLA
                     IFSDTQIKSLEIGSSAISLPKDSTMQFIEHSGSSINAGLTSLKELEDQMKTAGAKLLT
                     KTALAMTDSQAKDEAGKEISQLRHYANKFEDALDLAFEYIGHWLGIGVDEVGTSQISG
                     NIDNDLDPNASMATIIQLRNAGVISNHSTFEEAKRRGLLSDSAKWEDEQARLQAEGLS
                     DDFTNPFNSNQSENAAS"
     gene            1952..3613
                     /locus_tag="PXE92_001420"
     CDS             1952..3613
                     /locus_tag="PXE92_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL5760669.1"
                     /translation="MTLQIHSIRTKVKTPLAKRIAHALTDRKILQFRFDAHLRNQVWQ
                     RLTKTQKALLNRINAAGIDALPKRELDKLLKELKAEIAKNYQETTAYIQPELSGFFAV
                     EKQALTELYNDEIGYDFFNQVPSYQRKATQQATIIAGMPLESWFEKQGSELSFKFEST
                     IRQGLLEGRQTPEIAKATAELFGISRRHADTLVITAVAKVADDAHKALRDENLDLIKG
                     EMHLSTLDTRTSTVCQVRDGKMWDTDYKPIGHSLPYQRPPLHPRCRSILQLVMKDWKE
                     LGFDDVKEMPKSTRASADGQVSEKTNYEEWLSSKTPEEQDKALGKGKADLWRRGVITF
                     SDMLDQSARPLTLKELYSLKNSSSVDKMDSVELVRKKAVAVEPMITRDVVSIITASGG
                     EPAGLDFRLKSLSSLQRKIDTEIMAGVSKEQAIASIRDVIRYTAILDEQRFVEQYQKM
                     QKDLEKQGYSTIIVKNTWKSNNAYKGINTFVSTFIEKNNIIFELQYHTKQSFELKNGK
                     LHELYEKFRDLNIPLAKKSEILLEMQKLSANLKEPKNIDLIKEKK"
     gene            3613..3831
                     /locus_tag="PXE92_001421"
     CDS             3613..3831
                     /locus_tag="PXE92_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760670.1"
                     /translation="MYQYYLAQVGNEQQKLIRGMPDNLLSFSVYEPEQEDWDNKFGPF
                     WADKILISGFDAYEEISEKEAIRFIKVH"
     gene            3832..4245
                     /locus_tag="PXE92_001422"
     CDS             3832..4245
                     /locus_tag="PXE92_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HDL5760671.1"
                     /translation="MCQAEQFARQLHYGQTDKAGKPYIEHLAFVAENISTKNEETEAV
                     AWLHDSVEDTQCSINDIRHIFGDVIADAVEAITKKQGESYFCYLDRVKSNPIAKVVKL
                     ADLTHNLCLERLPKITEKDLKRAEKYKSALEYLQA"
     gene            4363..5097
                     /locus_tag="PXE92_001423"
     CDS             4363..5097
                     /locus_tag="PXE92_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760672.1"
                     /translation="MKLKLDENGHVVVENGMPVYIHDDGKEIPFDALKATQKITQLNA
                     EAKQHREAKEKAEADLKAFSGIDDPKAALEALKTVANLDAKKLIDAGDAEKVKAEIIK
                     GYDEKLAVATAQAEKLQQQLHAELIGGSFARSKYAQEHLNIPSDVVQAFFGKHFSISD
                     DGKVVAKFADGGEIFSRTRPGEKADFEEALEALVSAYPNKDAILKPSGSSGAGAGGGS
                     RSSSMPKTLSDCKTDEERIAYLQANS"
     gene            5163..6110
                     /locus_tag="PXE92_001424"
     CDS             5163..6110
                     /locus_tag="PXE92_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005643804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760673.1"
                     /translation="MAFDLQVFNKQTQLALTETVDQAIEKFNAASGGAIILQNKPAEG
                     DFDIRASFKGIAGLVRRRNVYGTGTVDAKRLEQLLDVAVKVAAGTAPIEYQPSQYKWI
                     LLNPELAAIEIGTQLAKARVADMLNTAIAGTVAAISGNTAMTLDEKTAAPTFRILNKG
                     AAKMGDRAGSLKAWVLHSTTLHGLYDNALTNAENLFKYENVNVIRDPFGRVFVVTDSP
                     ALMASDGTFNTLGLVENAVVVSGNNDFDSVLVPKTGGENLSAVYQAEWTYNLGILGYK
                     WDMTAGGKSPNDTALGTPTNWDKSVTSNKDTAGVLVKTK"
     gene            6170..6520
                     /locus_tag="PXE92_001425"
     CDS             6170..6520
                     /locus_tag="PXE92_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760674.1"
                     /translation="MKRILYFTTDFSAKNIAFAKAHGVLMRNLNAYHPSDTLENADAV
                     CGNVPQAYQHLPLFELPESNQKSGQDLKTLKTEEIKEKLTELGIAFEANAKKETLLTL
                     LTQAVGRDGTNDAK"
     gene            6510..6947
                     /locus_tag="PXE92_001426"
     CDS             6510..6947
                     /locus_tag="PXE92_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760675.1"
                     /translation="MLNSYMTVEQANAYHDIRMSREAWNALSDQEKQQRLVSASDFLD
                     FNYRFSGEKADLTQEREFPRKGFEAIGIPKAVQFAVCELALQDNLTANQEAQMSSVRV
                     GPVSVNYDNSSPQNSVNRFEYVRQLLSTWLDRSSFGTVKLERS"
     gene            6947..7318
                     /locus_tag="PXE92_001427"
     CDS             6947..7318
                     /locus_tag="PXE92_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760676.1"
                     /translation="MADFYGNLGKISHSLIKQFGQPCSVTINEQGRYNPATGERKKGS
                     STVHAGYCLFDNLAFDFRNQQSVSVQQGDVMIYLTADCKPVLNAVIEANGEKWSVINV
                     QPIRPAATTMIYQVQGRKADG"
     gene            7311..7724
                     /locus_tag="PXE92_001428"
     CDS             7311..7724
                     /locus_tag="PXE92_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDL5760677.1"
                     /translation="MGSFHAQIARFVEQTQQKADRALRVIALQTLSGVQKKSPVDTGQ
                     LRRSWTVALNGFPSSYNGSQTVLNSAKFGDMIVIATNKPYAPMLEYGLYPNPPKKPTG
                     KTKNGYSIQAPNGMVRITVQEMQAFIRNNPQLGVS"
     gene            7724..8116
                     /locus_tag="PXE92_001429"
     CDS             7724..8116
                     /locus_tag="PXE92_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760678.1"
                     /translation="MRPIIRSVLEQHLAELNPFNTVWEGIIDSPKLPYQTVSMTTSTN
                     ETATIGNTPKAKQSGFLQVTLYYPLDQGTKAIEERADEIFRHFFGQVWIEENVQILVQ
                     QPPLVASLYRLDNSIALPITIYFTAYEL"
     gene            8126..9148
                     /locus_tag="PXE92_001430"
     CDS             8126..9148
                     /locus_tag="PXE92_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760679.1"
                     /translation="MSILGNSQGTKRTVVFAKESSFGTKAAPTGAKIMPRVETSLNTN
                     FESYQSEEIRDDLQRSASVIGFEKVEGDIKGELAAGQWAAFFAAALRGSFTAQAKKPI
                     ITKTTDGTGEKNGKILIVPKTSHTSDSFTLEDVFKDINVSRQYLGCRVSKLSLDVQPN
                     GIASITVSFLGQRGEESTTAYFTNPTDLTQSGKLAGVKGSLQVNKRPVGLVTAFKLDI
                     DLGASSEPVLGAKYAPDVFIGTVAVSGSFTMYFQDKTMIDAVRNGTDLSLALRMDAEE
                     RTNTDYLTIILPGVKVTSNELDDGAKNIMQTLNFDAFPAVWDSASQIDNVLKVATTMI
                     VQDSLA"
     gene            9238..9639
                     /locus_tag="PXE92_001431"
     CDS             9238..9639
                     /locus_tag="PXE92_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760680.1"
                     /translation="MNLNALSKEKQLAEHRFELVHPVSGEPLGVFMSVVSAKSDKAQR
                     FAEKQLRQEQMRELENAKSRKPKFKGLGDMIAESRAMAIDRLTGWENVEWNEKPLEFS
                     DQNAELLLTECDWIVEQIFEHSNDLGKFLKS"
     gene            9654..9980
                     /locus_tag="PXE92_001432"
     CDS             9654..9980
                     /locus_tag="PXE92_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760681.1"
                     /translation="MYAEKTFKLDKKLKGSESTLREHLQAIEMQTGITPEELHNPEPS
                     PAVAYLLGWFFELAMSRQSGMSLNPISYTEIDAWSRLFARHLEQWEISVIKQLDMIYL
                     NVQQTE"
     gene            9982..10305
                     /locus_tag="PXE92_001433"
     CDS             9982..10305
                     /locus_tag="PXE92_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5760682.1"
                     /translation="MDTFNFQPNWGLNVQRKPEVMKIAFGDGYEQVAPKGLNHNLRTY
                     SAVFTGTEARIKQIEAFFERQGGYKAFLWTPYGGKEGKFRCEEWEVSISSGKWTLSAT
                     IREVL"
     gene            10392..11084
                     /locus_tag="PXE92_001434"
     CDS             10392..11084
                     /locus_tag="PXE92_001434"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760683.1"
                     /translation="MKKIFVSALLLTCSLSALGNSSYELIIDSMQDLEKHKPEILSIP
                     EADRNTFIRYMMRKELRIKLNQGRLADGLTVREAIQNQQAFEKDRNSKMQQEKQKKET
                     EKAEKEKAVTDFNQKFELSITGARKAKNALNQDILLVSLSLKNNSDKPIIAVQPDIQF
                     VLGEDKQTISSMRPKKFENGIPPNGSEIFEFGFDLDDMFALKAEKNIEKLRAVFQTAE
                     VLFADGTTEKLQ"
     gene            11148..11972
                     /locus_tag="PXE92_001435"
                     /pseudo
     CDS             11148..11972
                     /locus_tag="PXE92_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015691083.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
     gene            14016..14174
                     /locus_tag="PXE92_001436"
                     /pseudo
     CDS             14016..14174
                     /locus_tag="PXE92_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251214.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
     gene            14182..>14687
                     /locus_tag="PXE92_001437"
     CDS             14182..>14687
                     /locus_tag="PXE92_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5760684.1"
                     /translation="MPISISNQMKLDLAKLEQNAMLDLYEVDLRNLKDKSGNAGRVYR
                     FYSGLNELKTSIVWQGRTYDPYPIEASGFERNSSGPSNRPTLTLSNLFGLITSIANQF
                     DECIGAIVRRHQVYAQYLDAVNFAGGNAKADPNQEIISHFVIEQLTSLTRETATFTLA
                     LPIETDNA"
BASE COUNT         4651 a         2826 c         3416 g         3794 t
ORIGIN      
        1 ggggactact tagaatcctc tgatgctcaa atctttagag ataaatacca agaattagaa
       61 tttaagccta accctgattt taacggtcct tattacgggc tggactttgg ttttgccaat
      121 gacccaacag cctgtgtgaa atgttgggtg ttcgatgatg acttatatat cgagcgtgaa
      181 gcagggaaag taagactaga gctcgatgag accgctgctt atttagcaaa tgctttgcct
      241 gatttgagta attatactgt tagagcagat tctgctcgcc cagaatccat cagttattta
      301 aaacgacatg gattgcctta tattcaacct gttccaaagt ggaaaggctc agtcgaagat
      361 ggggttgagc atataaaatc ttatcgtaaa gtatatattc atccaagttg tacagaggta
      421 ttgaaagaat ttcgccttta tagttacaaa acggacagat taagtggtga tgtactgcct
      481 atcattattg acgctcataa ccactatatt gatgccattc gttatgcctt aaatcctctt
      541 attcaggcaa gaggcgaggc gaagcaatgt gcattaaagg tttattaaaa tgaggtaaca
      601 atgcctaact ccatctcagc cgattttgcg gcattaaaag caaaaacaaa aatcatcgat
      661 gatttactcg gtggcacaca aaaaatgcga caagcgggtc aaacctacct ctataaaatg
      721 aaaatggaag aggaagatgg atataaaaac cgattaaatc gttctacgct ttatccggca
      781 ttgagggaaa cgctttcgca gatgttgggg agagtgtttt ttaatccgat caacgtagag
      841 gatgtgcata aacaaatcga accattgttt gatgatattg atttagaggg taacaatctt
      901 gatgtattcg cttctcgttg gttttatgct gcattggctt atggcgtatc ttattgcttg
      961 gtggattttg tgagggtaga gaatgcccgc agtcttgcag aagaaaaagc tcaaaatgca
     1021 cgtccgtatt tggtgcatat taagccgcaa caagtgctgg gctttaaaac agccaaaatc
     1081 aacggtaaaa ctgcttttac ccaatttcgt tataaagaga cagttacaga agatgatggc
     1141 gagtttgctt ctaaacaggt gaactacatt tatgtttatg aaatcggacg tgtccgaaaa
     1201 tataagaacg atgagggtgg cttatcactg gttgctgata tgcaaatcaa agctcaaaat
     1261 acaccgcttg catttgtgcc tattgttcca tttatcacta aaccgattga tgtttgggga
     1321 atgggtgagc cgcctttaat ggagctggct tatttaaata ttaagcactg gcaaagtcag
     1381 tcagatcaag acaatatttt gaatattgct cgtgtaccgc tattagctat tttctctgat
     1441 actcaaataa aatcccttga aatcggctca agtgcaatat ctctgccgaa agacagtaca
     1501 atgcagttta ttgagcattc aggttcgtct attaatgccg gtttaaccag tctgaaagaa
     1561 ctagaagacc aaatgaaaac tgccggtgcg aaactgctaa ctaaaacagc attagcaatg
     1621 acggatagtc aggctaaaga tgaagcaggt aaagagatct cacagcttag acattatgct
     1681 aacaaatttg aagatgctct cgatttggct tttgagtaca ttgggcattg gctaggtatc
     1741 ggcgttgatg aagttgggac ttcgcaaatt tcaggcaata tcgacaatga tttagatcca
     1801 aatgcgtcaa tggcaaccat tattcagcta cgcaatgccg gtgtcatttc aaatcactct
     1861 acgtttgaag aagctaaaag acgaggttta ttgtcagata gtgcaaaatg ggaagacgaa
     1921 caagcaaggt tacaagcgga aggtttaagc gatgacttta caaatccatt caattcgaac
     1981 caaagtgaaa acgccgctag ctaaacggat cgctcacgca ttaacagatc gtaaaatatt
     2041 gcagttccgt tttgatgctc atttacgaaa tcaagtttgg caacgactca caaaaacgca
     2101 aaaggcatta ttaaaccgaa ttaatgcagc cgggatagat gccttaccga aaagagagtt
     2161 ggataaactg ctcaaagaac tcaaagcaga aattgcaaaa aattaccaag aaacgaccgc
     2221 ttacattcag cctgaattaa gcggtttttt tgcggttgaa aaacaggcac tgactgagct
     2281 ttacaatgat gaaatcggct atgatttttt caatcaagtg ccgtcatatc aacgtaaagc
     2341 tacgcaacaa gcgactatta ttgccggaat gccgcttgaa agttggtttg aaaagcaagg
     2401 atcagagctt tcgtttaaat ttgaaagcac cattcggcaa ggcttgttag agggtaggca
     2461 aacgcctgag attgccaaag ctacggctga attatttggt atatccagac ggcacgctga
     2521 tacacttgtc attactgctg tggcaaaagt ggcggacgat gctcacaagg cattgcgaga
     2581 tgaaaatctt gatttaatta agggtgagat gcacttatca acgctcgata cccgcaccag
     2641 tactgtttgt caagtgcgag acggtaagat gtgggacact gattacaagc ctatcggaca
     2701 cagtttgccg tatcaacgcc caccacttca ccctcgctgt cgttcgattc tgcaactggt
     2761 gatgaaagac tggaaagagt taggctttga tgatgtgaaa gaaatgccga aaagcactag
     2821 ggcgagtgca gacgggcaag tgtcggagaa gacaaactat gaagagtggc tcagtagcaa
     2881 aacaccggaa gagcaagata aagcgctagg caaaggcaag gcggatttgt ggcggcgggg
     2941 agtgataacg tttagcgata tgttagatca aagtgctaga ccattgacac taaaagagct
     3001 atattcatta aaaaatagtt cttcggtaga taaaatggat agtgtggaac ttgtccgtaa
     3061 aaaggctgtt gcagttgagc ctatgattac tcgtgatgta gtatcaatta ttacagcatc
     3121 tgggggcgag cctgccggct tagattttcg cttgaaatca ctatcatctt tgcagcgaaa
     3181 aattgatacg gaaataatgg ccggagtgtc aaaagagcaa gcgatagcaa gtattcgaga
     3241 tgttattcgc tacactgcaa tcttagatga acagcgtttt gttgagcaat accaaaaaat
     3301 gcaaaaagac ttggagaaac aaggttattc tacgatcatt gttaaaaaca cttggaaatc
     3361 aaataatgct tataagggca ttaatacgtt tgtgagcact tttattgaaa agaataatat
     3421 aatttttgaa ttgcaatatc atacaaaaca aagttttgag ttgaaaaacg gtaaattgca
     3481 cgagctctat gaaaaattca gagatctgaa tatacctctt gcaaaaaaat cagaaatttt
     3541 acttgaaatg cagaagttaa gtgctaatct aaaagagcca aagaacattg atttaatcaa
     3601 ggagaaaaaa taatgtatca gtattattta gctcaagttg gcaatgaaca gcaaaaactt
     3661 attcgtggta tgcctgacaa tctacttagt ttctcggttt atgagcctga acaagaagat
     3721 tgggataata agttcggccc attttgggca gacaagatct tgataagcgg atttgacgct
     3781 tacgaggaaa tttcagaaaa ggaagcaatc cgatttatca aggtacatta aatgtgtcaa
     3841 gctgaacaat tcgctcgcca actgcattat ggacaaacag ataaagctgg aaagccatac
     3901 attgagcatc ttgcttttgt tgcagaaaac attagcacaa aaaatgaaga gacagaagca
     3961 gtagcttggt tgcacgacag tgtagaagat actcagtgtt caattaatga tattcgtcat
     4021 atatttggcg atgttattgc tgatgcagtt gaggctatta ctaaaaagca aggcgaaagt
     4081 tatttttgct acttggatag agtaaaatca aatcctattg ctaaggtggt taagttagct
     4141 gatttgactc ataatctttg ccttgagcga ttgcccaaga tcactgaaaa ggatcttaaa
     4201 cgagcagaaa aatacaaatc agcattggaa tatctacaag cctagcctaa aacgctaggc
     4261 ttttttatcg caatttttta ccccaaactg accgtttgtg agccatcaca ggcggttttt
     4321 tattatcggg cggaagccca ccagcaatga gaggaagctc aaatgaaatt aaaattagac
     4381 gaaaacggac atgtagtagt tgaaaatggt atgcctgtgt atattcacga tgacggaaag
     4441 gaaattccgt tcgatgcact aaaggcgaca cagaaaatca cacaactgaa cgctgaggca
     4501 aagcaacatc gagaagctaa agagaaagcg gaagccgact taaaagcatt ctcagggatt
     4561 gacgatccga aagctgcact cgaggcatta aagacggttg ccaatttaga tgctaaaaag
     4621 ctgattgatg ccggtgatgc ggaaaaagtc aaagcggaaa tcatcaaagg ttacgatgag
     4681 aaattagctg tggcaaccgc tcaagccgaa aaactgcaac agcagttaca cgctgaatta
     4741 atcggtggtt cgtttgctcg gtctaaatac gctcaagaac acttgaatat tccgtctgat
     4801 gtcgtacagg cattcttcgg taagcatttt agtatttcgg atgacggcaa agtggtagct
     4861 aaatttgctg acgggggcga aatctttagt cgcacccgcc cgggcgaaaa agcagatttt
     4921 gaagaggcat tagaagcttt agtaagtgct tatccaaata aagacgctat tttaaaacca
     4981 agtggttcaa gtggggcagg agcaggtggc ggatcacgca gttcatctat gccgaaaaca
     5041 ttatcggact gcaaaacaga tgaagagcgt atcgcttatc ttcaagcaaa ttcgtaaggt
     5101 gcaagaggtt gcaccttttt tattttcggt gcaatcgcac cactttttag aggaaaatca
     5161 aaatggcatt tgacctacag gtttttaaca aacaaacgca attagccttg accgaaactg
     5221 tcgatcaggc tattgaaaaa ttcaatgcag catcaggcgg tgcaatcatt ttacagaaca
     5281 agccagctga aggtgatttt gatatccgtg ctagctttaa aggtattgcc ggtttagttc
     5341 gccgccgtaa tgtgtacggt acaggtacgg tagatgcaaa acgtttagag caattactgg
     5401 acgtagcagt taaagtggcg gcaggtacag caccgattga ataccagccg agtcaatata
     5461 aatggatttt attaaatcct gaattggcgg cgattgaaat cggcacacaa cttgccaaag
     5521 cccgtgttgc tgatatgctc aatacggcta ttgccggcac ggttgctgca attagtggca
     5581 atacagcaat gacacttgat gaaaagaccg ccgctccgac attccgcatt ttaaacaaag
     5641 gtgcagcgaa aatgggtgat cgtgccggtt cgcttaaagc gtgggtgttg cactccacaa
     5701 ccttacacgg cttatacgat aatgccttaa ccaatgcgga aaacttattc aagtacgaaa
     5761 acgtgaacgt aattcgtgac ccgtttgggc gtgtatttgt cgtcacagac agcccggctt
     5821 taatggcttc agacggtaca tttaacacct taggcttggt tgaaaatgcg gtggtagttt
     5881 ccggcaacaa tgactttgac agcgtgttag tgccgaaaac cggcggagaa aacctttcag
     5941 cagtttacca agctgaatgg acctataact taggaatcct aggttataaa tgggatatga
     6001 ccgctggtgg taaatcaccg aacgataccg ccctaggcac accgacgaac tgggataaat
     6061 cggttacctc caacaaagac accgccggtg tattggtaaa aacgaagtaa tttttaaccg
     6121 cttgtagata aggtttacaa gcggttgttt ttttatctgg agtttgcaaa tgaaacgaat
     6181 actttatttt acaacggatt tttcggcaaa aaacattgcc tttgccaaag ctcacggtgt
     6241 attaatgcgg aatctgaacg cttaccaccc atcagacacc ttagaaaatg cagatgcagt
     6301 gtgcggtaac gtacctcaag cttatcaaca tttaccgttg tttgaattgc ctgagtctaa
     6361 ccaaaaatca ggtcaagatt tgaaaacctt aaaaaccgaa gaaattaagg aaaaactgac
     6421 tgaattaggt attgcttttg aggcgaatgc caaaaaagaa acattactaa ccttactcac
     6481 tcaggcggtg ggacgtgacg gaacaaacga tgctaaatag ttatatgacg gttgagcaag
     6541 ccaacgccta tcacgacatc agaatgagcc gtgaggcgtg gaatgcgtta agcgatcaag
     6601 aaaaacagca acgattggtg tcagcgtctg attttctgga tttcaattat cgtttttcag
     6661 gcgaaaaagc agatcttact caagagcgtg aatttccacg caagggtttt gaagctatcg
     6721 gtattcctaa agccgtgcaa tttgcggtat gtgagttggc attgcaagat aacttgaccg
     6781 caaatcaaga agctcaaatg agtagcgtaa gagttggccc ggtttcagtt aattatgata
     6841 acagttcacc gcaaaacagc gtgaatcggt ttgagtatgt gaggcagttg ctttccactt
     6901 ggttagatcg atcttctttc ggcacggtta agttggagcg tagttgatgg cggattttta
     6961 cggcaattta gggaaaatct cccattcttt gattaagcaa ttcgggcagc cttgtagtgt
     7021 aacaattaac gaacaaggca gatacaaccc tgcaaccggt gagcggaaaa aaggtagctc
     7081 aacggttcac gcaggctatt gtctgtttga taatttggcg tttgatttcc gcaatcagca
     7141 atctgtcagc gttcaacaag gcgatgtgat gatttatctc actgccgatt gcaaaccggt
     7201 attaaatgct gtgattgaag caaacggcga aaaatggtcg gtcatcaacg tccagcctat
     7261 acgcccagca gctaccacga tgatttatca agtacaaggg agaaaagccg atgggtagtt
     7321 ttcacgctca aatcgcccgt tttgtggaac aaacgcaaca aaaagcggat agggcgttaa
     7381 gggtaattgc cctgcaaacc ttaagtgggg tgcagaagaa atcgcctgtc gataccggac
     7441 aacttcggcg tagctggacg gtggcattaa atggtttccc gagcagttat aacggcagtc
     7501 aaaccgtgct gaatagtgct aaattcggcg atatgattgt gattgctacc aataaacctt
     7561 atgcaccaat gctcgaatat gggctttacc cgaacccacc aaaaaaaccg accggcaaga
     7621 ccaaaaacgg ttattcaata caagcaccta atggaatggt gcgaattacc gtgcaggaaa
     7681 tgcaagcctt tatccgcaat aatccacaat taggagtaag ctgatgcgac cgattatccg
     7741 ctcggtatta gagcaacatc ttgccgaact caatccgttt aatacggttt gggagggcat
     7801 catcgacagc ccgaaactgc cgtatcaaac cgtatcaatg acgacttcaa ccaacgaaac
     7861 cgccacgatt ggtaatacgc cgaaagccaa acagagcggt tttttgcagg tcacgcttta
     7921 ctatccgcta gatcagggga caaaggcgat tgaggaacga gccgatgaga tcttccgcca
     7981 ctttttcggg caggtctgga ttgaggaaaa tgtgcaaatt ctggtgcaac agccaccgct
     8041 tgtagcctca ctttatcgac tggataacag cattgcctta cccatcacca tctattttac
     8101 cgcttatgaa ctataggaga acccaatgtc tattctaggc aattcacaag gcacaaaacg
     8161 tacggtcgtt tttgccaaag agagttcttt cggcacgaaa gctgctccga caggcgcaaa
     8221 aattatgcct cgtgttgaaa cctcactcaa taccaatttt gaaagttatc aatcggaaga
     8281 gatcagagat gatttacaac gctccgcctc tgtgatcggc tttgaaaagg tcgaaggcga
     8341 tattaaaggc gaactagccg ccggacaatg ggcggcattt tttgcggctg cattacgtgg
     8401 ttcatttacc gctcaggcga aaaagccgat tattaccaaa accacagacg gcaccggcga
     8461 gaaaaacggt aaaattttga ttgtgccgaa aaccagccac acctccgaca gtttcacgct
     8521 ggaagatgtc ttcaaagaca tcaacgtcag ccgccagtat ttgggatgtc gtgtatcgaa
     8581 actcagcctt gatgtgcaac caaacggtat tgcctcgatt acagtctcat ttttagggca
     8641 acgaggcgaa gaaagtacaa cagcctattt taccaatccc accgatttaa cccaatccgg
     8701 caagctggca ggggtaaaag gctcattgca ggtcaataaa cgcccagtcg ggttagtgac
     8761 ggcctttaaa ctggacattg atttaggggc aagcagtgag ccggtattag gggcaaaata
     8821 cgcccctgat gtctttatcg gtacagtggc agtgagcgga tcgtttacga tgtacttcca
     8881 agacaagacg atgattgatg cggtgcgtaa cggcacagat ttatcccttg ctttgcggat
     8941 ggatgccgaa gagcgtacca ataccgacta tttaaccatt atcttaccgg gtgtcaaagt
     9001 gacctcaaac gagttggacg atggggcgaa aaacattatg cagacactca attttgacgc
     9061 attccctgcg gtatgggatt cagcaagcca aatcgacaac gtgctaaaag tcgccaccac
     9121 aatgattgtg caagacagcc tcgcttaatc gaaattttgc aaaaaaataa ccgtatctaa
     9181 ccgcttgccc tcaaacaagc ggtctttttt atccccaatt tacaaaagga aacccaaatg
     9241 aatttaaacg cattaagtaa agaaaaacag ttagccgaac accgttttga gctggttcac
     9301 cctgttagtg gcgaaccgct cggcgtgttt atgagcgtcg tgagtgctaa gagtgataag
     9361 gctcaacgct ttgccgaaaa acaattacgc caagaacaga tgagagagct ggaaaatgcc
     9421 aaatcccgca agccgaaatt caaaggctta ggcgatatga ttgccgaaag tcgtgcaatg
     9481 gcgattgacc gcttaaccgg ctgggagaat gtcgaatgga acgaaaaacc gttggagttt
     9541 tccgaccaga atgcggagct acttttaacc gaatgtgatt ggattgtgga gcaaatcttt
     9601 gagcattcga acgatctggg aaagttcttg aagagctaat tgatgattta caggtgtatg
     9661 cagagaaaac gtttaagttg gataaaaaac ttaaaggcag cgaaagtacc ttgcgagagc
     9721 atttgcaggc aatcgaaatg caaactggca ttacaccaga agaattgcat aaccctgaac
     9781 ccagtccagc ggtggcctat ctgctgggct ggttcttcga gttggcaatg agccgacaat
     9841 cgggtatgag cttaaaccca attagctaca ctgaaattga tgcgtggagc aggctttttg
     9901 ctcgtcatct cgaacaatgg gagatcagcg taattaagca gcttgatatg atttacttga
     9961 acgtacaaca aacggagtag tatggatact ttcaactttc agcccaattg ggggcttaac
    10021 gtacagagaa agccagaagt gatgaaaatc gcctttggtg acggttacga acaagtcgcc
    10081 cctaaagggt taaaccataa tctccgcact tattccgctg ttttcaccgg cacagaagca
    10141 cggattaaac agattgaggc attttttgaa cgacaaggcg gctataaggc ttttctttgg
    10201 acaccttacg gcgggaaaga ggggaaattc cgctgtgaag agtgggaggt aagcataagc
    10261 agcgggaaat ggacgctgtc ggcgacgata agagaagtgt tgtagttttt tctgattttg
    10321 tgaactggtt cacactctgt gggttggata taggttagaa tttaagtcta atttgcttaa
    10381 cggagtcttt tatgaaaaaa atttttgttt cagccttatt gctcacttgc tcgttatctg
    10441 cacttggaaa ttcctcgtat gagttgatta ttgactcaat gcaagatctt gaaaagcata
    10501 aacccgaaat tctatctata ccagaagcgg atagaaatac ttttattcgt tatatgatgc
    10561 gaaaagaact gcggataaag ttaaatcaag gcagattagc ggatggtcta actgtgagag
    10621 aagctattca aaatcaacag gcatttgaaa aagatagaaa tagcaaaatg cagcaggaga
    10681 agcaaaaaaa agaaacagag aaagcagaaa aagaaaaagc tgttacggat tttaaccaaa
    10741 aatttgagct atccattaca ggggcgagaa aggcaaaaaa tgcactaaat caagatattt
    10801 tgcttgtttc attaagtcta aaaaataact cagataagcc aattatcgct gtacaaccgg
    10861 atattcaatt tgtactgggt gaagataaac aaactatttc atccatgcgt ccaaaaaaat
    10921 ttgaaaacgg cattccgcct aatggctcag agatttttga gtttgggttt gatttagatg
    10981 atatgtttgc tttgaaagca gaaaaaaata tagagaaatt gagggcagtc ttccaaacag
    11041 cagaagttct ttttgctgat ggaacaactg aaaaacttca atagtaattg gtaaatcttc
    11101 attggccgct tgtagaaata caggcggttt ttttattgga gcaagctatg gcagatttag
    11161 caacactggc gattaaaatc gaaacagaag gcgcaagccg agcaagtgca gatctaagta
    11221 aggtcgagca atctgcaaag aacacagaga aagccgcaga taatctgacg cgcgcaatgg
    11281 gaaatttgaa gcggatttta gcgattgcag ggctggctgg tgggttatcc gcttacctag
    11341 atatggctga aagaatgcag tcgttaaacg cacagcttaa atttgttact aactctcaat
    11401 acgaattcaa tagcgcacaa aaagagcttt ttgcgattgc gcagaatacg cgcgctagtt
    11461 tggaaagcac cacgcaactt tatattaaat cttctcaggc actgaaagat tacggctacg
    11521 cgcaaaagga tattctcaca tttaccgaaa ccattaacaa agcaatggca gttggcgggg
    11581 ttaagccaca agagcaagct agtgctttac tccaattatc acaggcatta ggttcaggga
    11641 aactgcaagg agatgaattc cgttcaattt cagaagctgc accgattatt ttagatacgc
    11701 ttgccgagta tatgggtaaa agtcgcgatg aagtaagaaa actcgcatcc gagggtaagc
    11761 tcaccgcaga cttactgttc aatgcgttta acggttcaag cgctaaaatt accgaaaaat
    11821 ttaatcaaat gccgctaaca tttggcggtg caatgcagca gttgcagaat gccacattga
    11881 aatttatcgg tgacctagat agtgcaaatg gcttgagtgg aatgttagct caagccatta
    11941 gttttttagc acagaatttt gatgtgttag gcaaggcttt gatttatgca accggtgctt
    12001 atattgcgtt taatgcagtt gcctttgctc agaattttgc aaaagcaacc ggtggtgtcg
    12061 gtttattaag tagtgcattt ggttatttga ctacgatgat ccgaggtgca actgttgcaa
    12121 tgatggctaa tcctatcgag cttttaacaa ctgcaattat tggggctgct tttgtatttg
    12181 atgcttttat cagtgatata gaggtaggtg cagcaacctt tgatgcgact tggggagatg
    12241 ttgcgacagc tgtgtgggat gattttaaag atttaacttc agatgcggca gattggttag
    12301 tcactcaatg ggataaagca accgccagtg cagcgagttc gttcagttcc ttaggtgttg
    12361 atattggctc agtatgggag acggtgcaat ccattacgaa aacattgatc aatagtatta
    12421 ttggtctgtt tgttggagct tatcaagcca tcgtgcttgc ttggaataat tttcctgcca
    12481 caatggaaaa cttgggtgtg atggcggtaa atgctcttgt cgatttggtt caaaaaggca
    12541 tcaatagcat tattcagctt atcaaattac cgattgagct tttaaacaga gcctcatcta
    12601 cttttggtgg aggaaatctg attgatacat caggttggaa ggcaagctta gatgatttta
    12661 aactaaaggc aagccgcgag gcagaagttg ttggtcaatc aattagccaa gcatttgcgg
    12721 atagtatcac cacagattac ataggcaatg cagttaattc agtgagtgac tatattgatg
    12781 gagcggcagt tcgtgggcgc ttaaaacgtc aattagatga aaccgcctct gacgatcaag
    12841 gtacgcagtc accagctaaa aaaacattag ctggaaataa taactctgct agtgactgga
    12901 aaaactacct caatgaactt gaacgagcca atgccgatgg attagcccgt attgcacttg
    12961 agcaagatcg ctcaatgcgt gaaatgttgg aaaaggcgaa gaaagccggt gcaagtcacg
    13021 ctgaaattga aaaagccaaa atgctgatta cagaacgtta tgctaaagag cgaatggaaa
    13081 ttgccgagaa gtatgtgccg agtctgaagt ttgaggaaga actcaaagat cagattaagg
    13141 aaattgatga actgcaaaag ttaaacctga ttaccaccga gcaagcaggt cttgcgaaag
    13201 aggcgttagc aggcaaatat cagccggtag ttgaaatcca acagcaatac atcaatcaac
    13261 tgagagagat tgaagcatta aaacaagccg gtgtattaag caaacctcaa gcagaagtag
    13321 cggccgaaaa agccaaatgg gacgccggca cacaaaaagc caaaatcgca ggtaaaaacg
    13381 ccgttagccc ttatgaaaaa tggaaatcgg aatttgaccc aatgcaggca attcaaaatg
    13441 agcaagcctc aaagttggca gaagtgcaat cgatgtacga tcagcatttg atccaatatg
    13501 aggattttat caacgctaaa gcacaaattg atgctaaggc gactgctgat actcatcaac
    13561 tgtttatgaa cagtattagt gggtttggtt cggcgataga tacgatgtta ggcgtgatga
    13621 aaaacgcagg gcaagagcaa tcaggtattt accgcacgat gtttgcgatg tcgaaagcgt
    13681 ttgctattgc ggaatcaatt ctgaacttga atcgtgcaat tactcaagca atgagcgatc
    13741 aaacagctat tacaccggct caaaaatttg caaatatggc ggctattgct agtgccgggg
    13801 cgagcttgat ttctaatatc cagtcagtct cattaggcgg tatggctcac agcggtattg
    13861 acaatgtgcc gaaagaaggc acttggttgc tggataaagg tgagcgtgta gtggatagtc
    13921 gtactaacca agacttaaaa acctttttat ccaatgctaa tcgtggcggt gcaagtggtc
    13981 aaagatcggc gataaatgtc aaaattatta ataacgggca acccgtagag gcgaaagtca
    14041 gcagtgaaga gactgtagat ggcaatatcc aaatgacggt ggaactgctg aagaaaatgg
    14101 atcaaatcgc cgatcaacgc taccgtagaa atcagttaaa tgatttaaga acaggtggaa
    14161 cattatctaa ataggtgaag tatgccaatt agtatttcta accaaatgaa actagatctt
    14221 gccaaacttg agcaaaatgc aatgctggac ttgtacgagg ttgatttgcg caatctcaaa
    14281 gataaaagtg gtaatgctgg cagagtttac cgcttttatt ctgggctaaa tgaactcaaa
    14341 acaagtatcg tctggcaagg gcggacttac gatccgtatc ctattgaggc aagtggattt
    14401 gaacgaaaca gtagcggccc gagcaatcgc ccgactctca cgctatcaaa tctgtttggt
    14461 ttaattacca gtattgcgaa tcagtttgac gaatgtatcg gtgcgattgt ccgccggcat
    14521 caggtttatg ctcaatattt agatgccgtg aattttgccg ggggtaatgc gaaagctgat
    14581 ccaaatcagg aaataatcag tcattttgtg attgagcagc ttaccagcct cacccgagaa
    14641 acggcgacct ttacgctggc attaccgatt gaaaccgata atgccaa
//
LOCUS       DANMBQ010000058        14347 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.058, whole genome shotgun sequence.
ACCESSION   DANMBQ010000058 DANMBQ010000000
VERSION     DANMBQ010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14347
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.058"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..2083
                     /locus_tag="PXE92_001438"
     CDS             <1..2083
                     /locus_tag="PXE92_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HDL5760685.1"
                     /translation="YLVFFSKIIKIPNLKGFLPHCEIRRRPLVGKTFIAQKRPNQIIG
                     WGLRPSAVGSRAYAQKHQLPYIALEDGFLRSLGLGVKGYPPFSLVYDDIGIYYDTTCP
                     SRLEKLLLEKPLQDQEQIKLAERALSQILTYGLSKYNHALDFSEIPSAKEKIVLVIDQ
                     TFGDMAVKYGQASEVDFNKMLETAISENPEAQIWVKTHPDVLSGKKKGYLTDLPQYTD
                     RVRIITEDVNPASLIKLCEKVYCVTSQMGFEALLLGKKVVTFGVPWFAGWGVTDDRNE
                     AVQLLVQQNRRKDRSLLQLFYAAYFDYSRYINPNTGEKGSIFDVIDYLYKAKRLNQRL
                     SGNLYCIGMSLWKQAVIKPFFNLPQCRLHFVRSLNSLKKRPLADNAKILVWSNGKADV
                     LQFAQQNNIPLLRMEDGFIRSVGLGANLVAPLSLVVDDLGIYFNAENTSRLEQILLSA
                     EHFSETDLSYAETLRQKLVASHIGKYNVGGGDVKFNAQGKKIILVPGQVEDDASIKSG
                     SPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGNRVGQIPTAETRRFADQMVDNANI
                     LDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYAGWGLTEDRLKSARRGKSLTLS
                     QLIAATLIYYPLYVDPISRQFIDANQAIHILSQQKRNLTNQRIKRSWVSKQYGKLQHL
                     YRAFKYASHTK"
     gene            2106..3338
                     /locus_tag="PXE92_001439"
     CDS             2106..3338
                     /locus_tag="PXE92_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL5760686.1"
                     /translation="MEHYLDELIINSQRILLLQGPIGSFFTEFARWLESEQKEVFKLN
                     FNGGDEYFYPNNSPNTFPYYDSLDNFEAYLIQFCQTHQIDNILCFGDNRYYHKVAKNV
                     CLKLKLVFWAFEEGYFRPEYITLEKWGVNAFSPIPKNHTFFLPYAELPVVSEPEKVSK
                     GFRCMAGKAIPYYWNAYKKRKAYAKYQHHRFLNLKYYLNLWTRSGIKRICYWLHDKGF
                     AKRVEKGEFGEFFIVPLQVYDDTQVRIHSEQKSVERFLREVLNSFAKFAPAHLNLIIK
                     HHPMDRGFIDYKMVIYEFLEQYPQLNGRVFYIHDVPLPVFLRYGKGMVTLNSTSGLSA
                     LLHNMPVKTLGRANYDFEGLTDKQPLDTFWANPQPPNSEVFKGYRQFHLHKTHINGNF
                     YHKSILRYPYNWENEAHR"
     gene            3419..4480
                     /locus_tag="PXE92_001440"
     CDS             3419..4480
                     /locus_tag="PXE92_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5760687.1"
                     /translation="MAIYAIWNNKGGVGKSYLTFQIACEYAKQYPAKKVLVVDLCPQA
                     NSSSMLLGGIEKGEQELAKIHSQVNKNTISGYISERLVSPYRSINSATKYVTQVSTIN
                     EYVPKNVYLVVGDEELEIQSSGILHASQAVHVPDSWRLVHLWVRDLVSDIQNAWDNDD
                     NVVFIDCNPSFTIYTELALAASDRLIIPFSADGSSKRAVKSVLSLVYGVKRHSGDVSS
                     HFYTESQKSKLALPQIYMYVGNRLTINAKASATAFKTVVEEIGDEIYNIWKTNANLFC
                     IHPAGVGTPTNKSSFRKMFQYEVRDANTASVVSGALGIPISRLSSGKRDVLGKNVMVN
                     QSQLDAQVPNIQNLVQCIE"
     gene            4632..6284
                     /locus_tag="PXE92_001441"
     CDS             4632..6284
                     /locus_tag="PXE92_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HDL5760688.1"
                     /translation="MTIFQVAQNWLAQDPDAETRAELEQLIQAAESDEKAKAELTARF
                     DGRLQFGTAGLRGRLQAGSMGMNRVLVAQAASGLAGFIKGYDKEPSIVIGYDGRKNSD
                     VFARDTAEIMAAAGIKTYLLPRKLPTPVLAYAIQYFDTTAGVMVTASHNPPEDNGYKV
                     YLGKANGGGQIVSPADKEIAALIDKVAAGDIRDLPRSQDFTVLDDEVVNAYIEKTASL
                     AKRPKAEINYVYTAMHGVGYEVLSKTLEKAGLPQPYLVSEQIQPDGSFPTVNFPNPEE
                     KGALDLAIKLAKEKNAEFIIANDPDADRLAVAVPDAQGNWKPLHGNVIGCFLGWYLAK
                     QFHAQGKQGVLACSLVSSPALAEIAKKYGLSSEETLTGFKYIGKVENLLFGFEEALGY
                     LVDPDKVRDKDGISAAIMFLDLVCSLKQEGKTLADYTTEFVQEFGAYVSGQISIRVCD
                     LAEIGKLMTALRNNPPSEIGGFKVAEFIDHTKTTRQNDILVFVLENGSRLIARPSGTE
                     PKIKFYLDARGTDAENAEQVLAQFDESVRSLLRQEEYGKQDC"
     gene            6337..7271
                     /locus_tag="PXE92_001442"
                     /pseudo
     CDS             6337..7271
                     /locus_tag="PXE92_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250489.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
     gene            complement(7293..9374)
                     /gene="recG"
                     /locus_tag="PXE92_001443"
     CDS             complement(7293..9374)
                     /gene="recG"
                     /locus_tag="PXE92_001443"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDL5760689.1"
                     /translation="MSEQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPMRY
                     EDRTRITPIADVRPESFATIEGYVQLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAG
                     MKNSLATGVRVKAFGEIKRGRFMAEIHHPEYQIIRDNQPLVLAETLTPIYSTTEGLKQ
                     ASLRKLTEQALALLEKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDH
                     PAQKRLIFEELLAHNLAMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRV
                     TADIEQDLAKPHPMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHA
                     NNFANWLNPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLA
                     LVIIDEQHRFGVHQRLTLREKGAKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDE
                     LPPGRTPITTVVISEDRRAEIVQRVYQVCKQEHRQAYWVCTLIDESEVLEAQAAAAIA
                     EDLQRALPDLRIGLVHGRLKPQEKQAIMAEFKAANLDLLVATTVIEVGVDVPNASLMI
                     IENSERLGLAQLHQLRGRVGRGATASHCVLMYKPPLGKISSKRLQVMRDSQDGFYIAE
                     KDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMIPLVQRYAKQIISENQPLAEALIKR
                     WLDNKAEYTNA"
     gene            complement(9378..9806)
                     /locus_tag="PXE92_001444"
     CDS             complement(9378..9806)
                     /locus_tag="PXE92_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL5760690.1"
                     /translation="MYRYLFDTNIVSELYKLRNDKMDVNVRQWLRGVNPSQTNISCIT
                     LSEIKTGILLKARKDKEQSDRLNDWFENNVLKAYQTKAFVVNNDIALLASEYHIPNKM
                     DLNDAYIAATAKYHNLILVTRNTKDFIRCDVRLFNPFETA"
     gene            complement(9806..10093)
                     /locus_tag="PXE92_001445"
     CDS             complement(9806..10093)
                     /locus_tag="PXE92_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL5760691.1"
                     /translation="MAITITSREFNQNASKVLKMAEKEPVFITKWGKIVNVVSSYMDY
                     QQKKPSEPSFEELFASSENEDVSDEFWQEFEQTLVEIRKSNKPRPVDFGDE"
     gene            10257..12140
                     /gene="htpG"
                     /locus_tag="PXE92_001446"
     CDS             10257..12140
                     /gene="htpG"
                     /locus_tag="PXE92_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HDL5760692.1"
                     /translation="MANNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAA
                     DKLRFKALSEPALYEGDGELRVRVSVDETLGTITIADNGIGMTREQVIDHLGTIAKSG
                     TKEFLNALGTDQAKDSQLIGQFGVGFYSSFIVADKVTVKTRAAGVPAEQGVIWESAGE
                     GDYTVADLEKKERGTEIILHLREDEKEFLNEWRLREIIGKYSDHIGLAVEIQTNEYDD
                     EGKASGQKWEKINKAQALWTRSKNEISDEEYTEFYKHLSHDFADPLIWSHNKVEGKQE
                     YTSLLYVPSKAPWDLFQREQKHGLKLYVQRVFIMDDAEVFMPNYLRFMRGLLDTNDLP
                     LNVSREILQENKVTQSLRSALTKRALQLLEKLAKDDAEKYAQFWQAFGVVLKEGVGED
                     FANKQQVAGLLRFASTQRDDSEQAVSFADYIARMKEGQKAIYFLTADSYQAAKNSPHL
                     ELFHKKGIEVLLLSDRIDEWLVSHLTEFDGKPLQSITKSDLDLGELADKQEEESQKAQ
                     QAEFGSFLERAKGYFGERVKNVVLTHRLTDTPAVVSTDSDEMTTQMAKLFAAMGQQAP
                     EVKYTFELNPDHPMVKKVADLADEAEFADWIELLFEQALLAERGTLENPTAFIKRVNK
                     LLG"
     gene            12193..12354
                     /locus_tag="PXE92_001447"
     CDS             12193..12354
                     /locus_tag="PXE92_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760693.1"
                     /translation="MEQKLNNVFGGIMFKEKDYDEYLEAKVKKGQIFTLEQANAEWQE
                     IIEQIEREN"
     gene            12518..14233
                     /gene="proS"
                     /locus_tag="PXE92_001448"
     CDS             12518..14233
                     /gene="proS"
                     /locus_tag="PXE92_001448"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDL5760694.1"
                     /translation="MRTSQYLFSTLKEMPNDAQVVSHQLMLRAGMIRPMASGLYNWLP
                     TGIKVLKKVENIIREEMNKGGAIEVLMPVVQPAELWVESGRWNDYGPELLRFKDRGER
                     DFVLGPTHEEVITDLVRREVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDA
                     YSFHTTQESLQETYDVMYQVYSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGE
                     DDVVFSTESDFAANIELAEAVAVGERQAPTAEMQLVDTPNAKTINELVENHGLAIEKT
                     VKTLVVKGATEEQPLIALVIRGDHELNEIKAQKHPLVADPLEFADEAEIKAKIGAGVG
                     SLGVVNMPIPVIIDRSVALMSDFGCGANIDGKHYFNVNWERDVAVPEIADLRNVVEGD
                     PSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVV
                     AAAIEQHYDDRGIIWPCDEMAPFTVAIVPMNMHKSEKVQAFAEELYANLKAQGVEVIF
                     DDRKERPGVMFADMELIGVPHMVVIGEKNLENGEIEYKNRRSGEKQMIAKESLLAFLK
                     ANVKA"
BASE COUNT         4215 a         2779 c         3272 g         4081 t
ORIGIN      
        1 ctatttagtg ttttttagta aaattataaa aatccctaat ttaaaaggtt ttttacctca
       61 ttgtgaaatt aggcgaagac ctcttgtggg aaaaaccttt attgctcaaa aaagaccgaa
      121 ccaaatcatc ggctgggggc ttcgtccttc agcggtggga tcaagagctt atgcacaaaa
      181 acatcaactt ccctatattg cattagaaga cggcttttta cgctcactag ggctgggtgt
      241 aaaaggctat ccgccatttt ctttagttta tgatgatata ggtatttatt acgataccac
      301 ctgtccttct cgtttagaaa agttattgct tgaaaaacct ttacaggatc aagagcaaat
      361 caagcttgca gagagagcat tatctcaaat cttaacttac ggactttcta aatataatca
      421 cgcactagat tttagtgaaa tcccctctgc caaagaaaaa atcgtgttag ttattgacca
      481 aacctttggt gatatggcgg tgaaatatgg tcaagcgagt gaagtggatt tcaataaaat
      541 gttggaaacg gcaatcagtg agaatccaga ggctcaaatt tgggtaaaaa ctcaccccga
      601 tgtattaagt ggcaagaaga aaggctattt gaccgattta cctcaatata ctgatagggt
      661 cagaattatt actgaagatg tgaatccggc aagtttgatt aaattgtgtg agaaagtcta
      721 ttgcgtaact tcgcaaatgg ggtttgaggc attattatta ggtaaaaaag tggttacctt
      781 tggtgtaccg tggtttgccg gttggggggt aacagatgat cgtaacgaag cggttcaact
      841 attagttcaa caaaatagac ggaaagatcg ttcattactg caactttttt atgctgcgta
      901 ttttgattac agccgttata ttaatccgaa taccggtgag aaaggctcta tttttgatgt
      961 catcgattat ctatataaag ccaaaagatt aaatcagcgc ttaagtggga atctatactg
     1021 tattggtatg tcgctatgga aacaggcggt aattaagccg ttttttaatt tgccacaatg
     1081 tcgattacat tttgttcgtt cgctaaattc tttaaaaaaa cgaccgcttg cagataatgc
     1141 aaaaatttta gtttggagca atggcaaagc ggatgtcttg caatttgcac agcagaataa
     1201 tattccattg ttaagaatgg aagatggatt cattcgctct gtcggactag gcgctaattt
     1261 agttgcaccg ctttctttag tagtcgatga tttaggcatt tattttaatg cagagaacac
     1321 ttcacgatta gaacaaattt tattgagtgc agagcatttt tctgaaactg atttgtctta
     1381 tgctgaaaca ttaaggcaga aattggtggc tagccatatt ggaaaatata atgtgggcgg
     1441 tggcgatgta aaatttaatg ctcaaggtaa aaaaataatt cttgtaccgg ggcaggtaga
     1501 agatgacgct tcgatcaaat caggttctcc acaaattaaa agaaatctgg atttactgaa
     1561 aaaagtgagg gaattaaacc ctagtgccta tattatttat aagcctcacc ctgatgtggt
     1621 aagtggtaat cgagtcggtc agattcctac ggcagaaaca cgcaggtttg cggatcagat
     1681 ggtggataat gccaatattt tagattgtat tttaattgca gatgaagtgc atacaatgac
     1741 atctttagcc ggtttcgaag cattattaag aggtaaaaaa gtgcattgct acggattacc
     1801 tttttatgct ggttggggat tgacggaaga tagattgaag tcggcacgca gaggtaaatc
     1861 tttgacatta tctcagttaa ttgccgcaac attgatatat taccctctgt atgttgatcc
     1921 tataagcagg cagtttattg atgccaatca agcgattcat atattgtcac aacagaaacg
     1981 aaacctaacc aatcaaagga ttaaacgttc ttgggtgagt aaacaatatg gaaaattaca
     2041 gcatctttat cgtgcgttta aatatgcttc ccacactaaa taagcgtaga gggtaggaaa
     2101 ttaagatgga acattattta gatgagctaa tcatcaatag ccagagaatt ttattgttac
     2161 aaggcccgat aggctctttt ttcactgagt ttgcccgttg gttagaaagt gagcaaaaag
     2221 aggtcttcaa gttaaatttt aatggcggag atgaatattt ctatccaaat aatagcccga
     2281 atacttttcc ttactatgat agcttagata attttgaagc ctatttaatt cagttttgcc
     2341 aaactcatca aatagataat atcttatgtt ttggcgataa tcgttattat cataaagtgg
     2401 ctaaaaacgt ttgcttgaag ttaaagttgg tcttttgggc gtttgaagaa gggtacttta
     2461 ggccagaata tattacgttg gaaaaatggg gtgtaaatgc tttttctcca atccctaaaa
     2521 atcacacttt ctttttgcct tatgccgagt taccagtagt cagtgaacca gaaaaagtat
     2581 ctaaaggctt tagatgtatg gcgggaaaag caatcccgta ctattggaat gcctataaaa
     2641 aacgtaaagc atacgcaaaa tatcagcatc atcgttttct gaatctcaaa tactacctta
     2701 atttatggac aaggtcggga attaagcgaa tatgttattg gttacatgat aaaggctttg
     2761 ccaagcgggt agaaaaagga gagtttggtg aatttttcat tgtgcctcta caagtttatg
     2821 atgacactca agtgaggatt catagtgaac aaaaaagtgt agagcgtttt ttaagggaag
     2881 ttctgaattc ctttgccaaa tttgcaccgg cacatctcaa tttaattatt aagcatcacc
     2941 cgatggatag aggatttata gattataaaa tggtgattta tgaattctta gagcaatatc
     3001 cccaattaaa cggtagagtt ttttatattc acgatgtgcc gttacctgtc tttttacgtt
     3061 atgggaaagg aatggtgact ttaaattcaa ccagtgggct ttctgcattg ctccataata
     3121 tgccggtcaa aaccttaggt agagccaatt atgattttga gggattaacc gataaacagc
     3181 cattagatac tttttgggct aatcctcagc cacctaattc ggaagtattt aaaggctaca
     3241 gacaatttca tttacataaa acgcatatta acggtaattt ttaccataaa tcgattttgc
     3301 gttatcctta taattgggaa aatgaagcac acaggtgatg gaaaatatta aaataagtaa
     3361 tatcttatag ctaaattatt gtgttattat tacacctatt gttaaaagag ggggcattat
     3421 ggctatttat gcaatatgga ataataaagg tggggttggt aaaagttatt taacttttca
     3481 aatcgcttgt gagtatgcaa aacaataccc agcaaaaaaa gttctcgttg ttgatttatg
     3541 tcctcaagca aattcatcat ctatgctatt aggcggcatt gaaaaaggtg agcaagagtt
     3601 agcaaaaatt cattctcaag taaacaagaa tactatttca ggatatattt cagaaagatt
     3661 agtaagtcct taccgttcta ttaatagtgc aacgaaatat gtaactcaag ttagcactat
     3721 aaatgaatat gtaccaaaaa atgtttatct tgttgttggt gatgaggaat tagaaatcca
     3781 atcatctggt attttacatg cttcccaagc tgttcatgtt cctgattctt ggcggctagt
     3841 gcatctttgg gtgcgtgatt tagtttctga tatacagaac gcttgggata atgatgataa
     3901 cgttgtattt attgattgca atccaagttt cactatttat actgaattag cgttggctgc
     3961 ttcagataga ttgatcatcc ctttttccgc tgatggttca tcaaaacgag ctgttaagtc
     4021 tgtattatct ctagtatatg gggttaaaag gcactctggg gatgtcagct ctcattttta
     4081 tacagaatct caaaagagta agttagcatt acctcaaatt tatatgtatg taggtaatag
     4141 attaacgata aatgccaaag catcagcaac cgcatttaaa acagttgtag aggaaatagg
     4201 tgatgaaatc tataatatat ggaaaactaa tgctaatttg ttctgtattc acccagcagg
     4261 tgttggtact cctacaaata aatcaagctt cagaaaaatg tttcagtatg aggtgagaga
     4321 tgcaaataca gcatctgttg tttcaggtgc tttaggtatt ccaattagtc gcttatcatc
     4381 aggaaaaaga gatgttttag gtaaaaatgt aatggtgaat cagtcacaat tagatgctca
     4441 agttcctaac attcaaaatc ttgttcagtg tatagaataa agaaaaatag cgtatattaa
     4501 gtacgctatt ttttatttct gacaaatctt tttatttgat agctcgatca caaaaaaaga
     4561 aatatctcct tttaaataaa aggactttgg gctaatctaa acagagtttt taaattacat
     4621 aggagtaaaa aatgactatt ttccaagttg cacaaaattg gttagcccaa gacccggatg
     4681 cagagacccg tgcggaatta gagcagttaa ttcaagcggc agaatcggac gagaaagcaa
     4741 aagcagaatt aacagcccgt tttgacggac gtttacagtt tggtacggct ggtttgcgtg
     4801 gtcgcttaca agcgggttca atgggtatga accgtgtttt ggtggcacaa gctgccagcg
     4861 gtttagctgg gtttattaaa ggttatgata aagagccgtc aattgttatt ggttatgacg
     4921 gtcgtaaaaa ttccgatgtg tttgcccgtg acaccgctga aattatggca gcggcaggca
     4981 ttaaaacgta cctgcttcct cgcaaattgc caacaccagt gcttgcctat gcgattcaat
     5041 attttgatac cacagccggt gtgatggtaa ctgccagcca caacccaccg gaagataacg
     5101 gctataaagt ttatttaggt aaagccaacg gtggcggaca aattgtttcg ccggcagata
     5161 aagaaattgc tgctctgatt gataaagtag cagcaggcga tattcgtgat ttacctcgta
     5221 gccaagattt cacggtgtta gacgatgaag tggtaaatgc ttatattgag aaaaccgcct
     5281 cactagccaa acggccaaaa gccgaaataa actacgttta cactgcaatg cacggtgtgg
     5341 gctatgaagt gttaagcaaa acattagaaa aagccggctt accgcaaccg tatttagtta
     5401 gtgagcagat tcagccggac ggttcgttcc caacggttaa tttcccgaac ccggaagaga
     5461 aaggggcgtt agatttagcg attaaattgg cgaaagagaa aaatgccgaa tttattatcg
     5521 ccaacgaccc ggatgctgac cgtttagcgg tagccgtgcc tgatgctcaa ggcaactgga
     5581 aaccactgca tggcaatgtg atcggctgtt tcttaggctg gtatttagcc aaacaattcc
     5641 acgcacaagg taaacaaggc gtgttggctt gctcgttagt atcctctccg gcgttagctg
     5701 aaattgcgaa aaaatatggt ttaagctcgg aagaaacctt aaccggcttt aaatatatcg
     5761 gaaaagttga aaacctatta tttggctttg aagaagcctt aggttatttg gttgacccag
     5821 acaaagtgcg tgataaagac ggcatttccg ctgccattat gttcttagat ttagtgtgca
     5881 gcctcaaaca agaaggtaaa acccttgcgg attacaccac cgagtttgta caagagttcg
     5941 gggcttatgt aagcggtcaa atttcgatca gagtttgtga tttagccgaa atcggcaaat
     6001 taatgacggc gttacgcaac aatcctccaa gcgaaattgg tggctttaaa gtggctgagt
     6061 ttattgacca taccaaaacc acacgccaaa atgacatttt agtgtttgtg ttggaaaatg
     6121 gcagccgttt gattgctcgc ccttcaggta ctgagccgaa aattaaattc tatttagatg
     6181 ctcgtggcac agacgctgaa aacgcagagc aagtgctggc tcagtttgac gaaagtgtgc
     6241 gttcgctgct tcgccaagaa gaatacggca aacaagattg ctaatggcat taattgaggg
     6301 ggagcttagg ctctcccttt tttaaaggag acaataatgg ctcaaaaaat tattttagat
     6361 tgtgatccgg ggcatgacga tgcgattgcg atgatgctcg cttgggggaa tccgaatatt
     6421 gatttgttgg cagtgactac ggtggtaggt aatcaaacct tagaaaaagt atcgcgtaat
     6481 gcgttggcgg ttgcggaaat tgctcatatt tgcaacgttc cttttgccaa aggttgtgcc
     6541 agaccgctgg tgcgtgaagt ggaaaatgcc ccggatattc acggtgattc gggaatggat
     6601 gggcctgtac tccctgaatc tacccgacaa tttgagaaaa aacacgccgc tcaattaatt
     6661 attgatttga taatgtcgca cccggagaaa agcattacct tagtgccgac cggtgggcaa
     6721 taaccaatat tgctctagct gcccgccttg agccccgtat tattgaaaga gtgaaagaag
     6781 tggtgctgat gggcggaggt tatcacaccg gcaactggag tgcggtggca gaatttaata
     6841 ttaaaattga cccggaagct gctcatattg tgtttaatgc cggttggaag gtgacgatgg
     6901 tcggcttaga cttaactcac caagcacttg cgacccccga tgtggttgaa cgctttaagg
     6961 cattaaacag caaatcgggg cagtttgtgg tggaattgct ggcgttcttc gccaaaatgt
     7021 ataaacaggc tcaaggcttt gatgctccac cggttcacga tgcctgtgcg gtggcgtatg
     7081 tgattgaccc aagcctgatt gaagttcagc aagtgccggt caatattgag ctaacaggca
     7141 cgcatacact gggtatgacg gtggcggatt tccgctaccc gccaaaacag tgtaatactt
     7201 gggtagcaaa aaaattagac aaatcccgct tttgggattt ggtaattgaa tcggtgaaaa
     7261 acctgccgta atctaaataa cccgcttgcc ggttaagcgt tggtatattc cgccttgttg
     7321 tctaaccaac gcttaattaa cgcctctgca agcggttgat tttcgctaat aatttgcttg
     7381 gcgtaacgtt gcaccagcgg aatcattttg cggtctcgca ttaaatccgc caccttaaat
     7441 tctgccattc cggtctgttt tgtgccgaga atttcgcctg tgcctcgaat ctccaaatct
     7501 ttttcggcaa tgtagaaacc gtcttggcta tcacgcatca cttgtaaccg cttgctggaa
     7561 attttcccga gcggcggttt gtacattaag acgcaatgcg aggcggttgc ccctcgccca
     7621 acacgtccac gcaactggtg gagttgagcc agcccgagtc gttcggaatt ttcgataatc
     7681 attaggctag cattcggcac gtccactccc acttcaatta cggtggtcgc aaccagcaaa
     7741 tctaaattcg ctgccttaaa ttccgccata atcgcttgtt tttcctgtgg tttcagccgt
     7801 ccgtgtacta acccgatgcg taaatccggc aaggctcgct gtaaatcttc ggcaatcgct
     7861 gccgcggctt gagcctccaa cacttcgctt tcatcaatca gggtgcagac ccaataggct
     7921 tggcggtgtt cttgcttaca gacttggtac acccgttgga cgatttctgc tcgccgatct
     7981 tcagaaatca ccacagtcgt gattggcgtt ctacccggtg gcagttcgtc aatgattgag
     8041 gtgtcgaggt cagcatagac cgtcattgcc agcgttctcg gaatgggggt cgccgtcata
     8101 atgagctgat gcggatagtt attttctttc gctccttttt cccgcaaggt cagccgttgg
     8161 tgtacgccaa aacggtgttg ttcatcaata atcaccaacg ctaaatggtg aaattccaca
     8221 ttgtcttgga acagggcgtg agtgccgata atcatctgca catcaccgtt tttgattgcc
     8281 tcaagttgtg cggttctcgc cttgcctttc actttaccgg caagccagcc aacctcaatc
     8341 ccaaagggat taagccagtt ggcaaaatta ttggcgtgct gttcggcaag aatttcggtc
     8401 ggtgccatta atgccacctg cttgccgtta tcaatcgcta atagtgctgc caaggcggct
     8461 actaaggttt tacctgaacc aacatcgcct tgtaccagtc gcatcatcgg gtgtggtttg
     8521 gcaagatctt gctcaatatc tgcggttact cggctttgtg cgtgagtagg cttaaaaggc
     8581 aaactgtcga gaaaacgctg ttttatatcg gtttggtaag taagtgcctc tgcatattgc
     8641 tgttttaccc ctaaacggag ttgctgcatc gctaaattgt gtgccagcag ttcttcaaaa
     8701 atcagccgtt tttgagcagg gtggtcacct ttttccaaga cttcggcaga aatcgtcggc
     8761 ggtgggcggt gcaataactg caacgcttct tttaggctgt atttgtgcgg attgtattca
     8821 tcaggcaaca gctcggcgac tttcactttc tctaataaag cgagggcttg ctcggttaat
     8881 ttccgcagcg aggcttgttt taacccctca gtggtggagt aaatcggggt cagggtttca
     8941 gccagtacaa gcggttgatt atcccgaata atttgatatt cagggtggtg aatttccgcc
     9001 ataaatcgcc cacgcttaat ttccccaaag gcttttaccc gaacgccggt ggcaaggcta
     9061 tttttcattc cagcattgaa attgaagaat ttaagcataa ttttgctggt gctgtcggag
     9121 agtgtaaccg ataaaatcgg gcgtttacca aactggactt cggtaagttg tacatagcct
     9181 tcaatggtgg caaagctttc cgggcgaaca tcagcaatcg gggtaatacg ggtgcgatct
     9241 tcataccgca ttggcagatg aaacagtaaa tcctgcacat tattaatgcc gattcgactt
     9301 aacttttcgg aaattgccgc tcctacgccg gaaagggcgg ttaatggcac gccgtctaat
     9361 aattgttcac tcattattta tgcggtttca aatgggttaa ataaacgcac atcacaacgg
     9421 ataaaatctt tggtgttgcg ggtgactaaa atcagattgt ggtatttggc ggttgccgca
     9481 atataagcat catttaaatc cattttattg ggaatatggt actctgatgc caatagagca
     9541 atgtcgttat tcaccacaaa cgcttttgtt tgataagcct ttaatacatt attttcaaac
     9601 caatcattta atcggtctga ttgttctttg tctttgcggg ctttcagcaa aatacctgtt
     9661 ttgatttcag ataacgtaat acagctgata ttggtctggc taggattaac ccctctcagc
     9721 cactggcgaa cattgacatc catcttgtca tttcttaact tataaagctc ggaaactata
     9781 ttggtatcaa aaaggtagcg atacattact catctccaaa atcaacaggt cttggtttat
     9841 tgcttttgcg gatttcaacc aatgtttgtt caaactcttg ccaaaattca tcgctcacat
     9901 cctcattttc ggaagaggcg aatagctctt caaagcttgg ctcgctaggc tttttctgct
     9961 gataatccat ataactagac accacattga cgattttgcc ccatttggta ataaaaaccg
    10021 gctctttttc tgccattttt aacactttgc tggcattttg attaaattct ctggaagtaa
    10081 tggttattgc catatcgctc tccaaaatgt agtaaaaaga tgagtgtatt ttattaaatg
    10141 tagtaatatc tttcaattaa ttcgctattt ggcaacagat attttgcaaa aaatcttgaa
    10201 aatctgacca cttgccccat ctattccctg ttttttaatg aataaaggaa tacacaatgg
    10261 caaataatca agaaacccgt ggcttccagt cggaagtgaa acagttattg caactgatga
    10321 tccactcgct ttactccaac aaagaaattt tcctgcgtga gcttatttcc aacgcctctg
    10381 acgccgccga taaattgcgg tttaaagccc tttccgagcc ggctttgtat gaaggtgatg
    10441 gcgaactgcg tgtgcgtgtc tctgttgatg aaacactcgg tacgattacg attgccgata
    10501 acggtatcgg tatgacccgt gagcaggtga tcgaccatct cggtacgatt gcaaaatctg
    10561 gtaccaaaga atttttgaac gcactcggca ctgatcaagc caaagacagc cagcttatcg
    10621 ggcagttcgg cgtgggcttt tactcttctt tcatcgtggc ggataaagtg acagtcaaaa
    10681 cccgtgccgc cggagtgcct gccgagcaag gcgtgatttg ggaatctgcc ggtgagggcg
    10741 attacaccgt tgccgatctg gagaaaaaag agcgtggcac ggaaatcatt cttcacttgc
    10801 gtgaggacga aaaagagttt ttaaacgaat ggcgtttgcg tgagattatc ggcaaatact
    10861 ccgaccatat cggcctggcg gtggaaattc agaccaatga atacgatgac gagggcaaag
    10921 caagcggtca aaaatgggaa aaaattaaca aagctcaagc gctttggaca cgctcaaaaa
    10981 atgagattag tgacgaggag tacaccgaat tttacaaaca cctcagccat gattttgccg
    11041 acccgctgat ttggtcgcac aataaagtcg aaggtaagca agaatacacc agcttgctgt
    11101 atgtgccgag caaagccccg tgggatctgt tccaacgcga gcaaaaacac ggcttgaaac
    11161 tctacgttca gcgtgtattt attatggacg atgcggaagt ctttatgccg aactacttgc
    11221 gttttatgcg tggcttgctc gacaccaacg acctgccgct caacgtcagc cgtgaaattc
    11281 tgcaagagaa taaagttacc caatcgctcc gttctgcctt aaccaagcgt gcgttacaac
    11341 tgctggaaaa attggcgaaa gacgatgccg aaaaatatgc ccaattctgg caagcgttcg
    11401 gcgtggtgct taaagagggc gtgggcgaag actttgccaa caaacaacag gttgcaggct
    11461 tactccgttt tgcctccacc cagcgtgatg acagcgaaca agcggtcagt tttgccgatt
    11521 atattgcaag aatgaaagag gggcagaaag cgatctactt cttaaccgca gacagctacc
    11581 aagcggctaa aaacagcccg cacttagagc tgttccacaa aaaaggcatt gaggtgctac
    11641 tgctttctga ccgcattgat gaatggttgg ttagccacct caccgagttt gacggcaaac
    11701 cgctacaaag cattaccaag tcggacttag acttaggcga gcttgccgac aagcaggaag
    11761 aagagagcca aaaagcccaa caggcggagt ttggttcgtt cttagaacgg gcgaaaggct
    11821 actttggtga acgggtcaaa aacgtggtgc tgactcaccg cttaaccgac acaccggcag
    11881 tggtttccac tgacagcgat gaaatgacca cccaaatggc aaaactgttt gcagcaatgg
    11941 ggcaacaagc accagaagtg aaatatactt ttgagctgaa cccagatcac ccaatggtga
    12001 aaaaagtagc tgatcttgcc gatgaagccg agttcgccga ttggattgaa ctgctgtttg
    12061 aacaagctct gcttgctgaa cgaggcacgt tggaaaaccc gacagccttt attaaacggg
    12121 taaataaatt gttgggctag ccattactaa aaacggaaat ctaggtttcc gtttttccat
    12181 attcaatata taatggaaca aaaattaaac aatgtattcg ggggaataat gtttaaagaa
    12241 aaagattatg atgaatattt agaggctaaa gtaaaaaaag gtcagatttt tactcttgaa
    12301 caagcaaatg ccgaatggca agagattatt gagcaaattg aacgagaaaa ttaagcatac
    12361 acagtttaag aaaataccct tagttaaaac aaaataaccg cttacaagcg gttatttttt
    12421 tataggattt tgcaaaattt cctgaaaatt taaccgcttt gttttaaaat aagcagattt
    12481 tttcaggttt caaagtttaa aaagaatagg aatagcaatg cgtacaagtc aatatttatt
    12541 ttcaaccctt aaagaaatgc cgaatgatgc acaagtagtt agccatcaat taatgttgcg
    12601 tgccggaatg attcgcccga tggcgtcagg tttatacaac tggttgccga ccgggatcaa
    12661 agtgttgaaa aaagtggaaa atattattcg tgaagagatg aacaaaggcg gggctatcga
    12721 ggtattaatg ccggtggttc agccggcgga attatgggtg gaatccggtc gttggaatga
    12781 ttacggcccg gaattattac gttttaaaga tcgtggcgag cgtgatttcg tgcttggccc
    12841 gactcacgaa gaagtgatta ccgacttggt tcgccgtgaa gtttcttcgt acaaacaact
    12901 tccgctgaat ttataccaaa ttcaaacgaa attccgtgat gaagtccgcc ctcgtttcgg
    12961 ggtaatgcgt tcgcgtgaat ttgtgatgaa agatgcctat tctttccaca ccacacaaga
    13021 gagcctgcaa gaaacctatg atgtgatgta tcaggtttac agcaatattt tcacccgttt
    13081 gggcttagat ttccgtgcgg tgcaggcaga taccggctct atcggcggtt cagcctctca
    13141 cgagttccaa gtgttagcct caagcggtga agatgatgtg gtattttcaa ccgaatcaga
    13201 ttttgctgcc aatattgaat tagccgaagc ggttgcggtg ggtgaacgcc aagcaccaac
    13261 ggcagaaatg caattagtgg atacgccaaa tgcgaaaacc atcaatgaat tagtagaaaa
    13321 tcacggttta gccattgaaa aaacggtgaa aaccttagtg gtgaaagggg caactgaaga
    13381 gcaaccgtta attgcgttag tgattcgtgg cgaccacgag ttaaacgaaa ttaaagctca
    13441 aaaacacccg ttggtggctg atccgcttga gtttgccgat gaagcggaaa ttaaagccaa
    13501 aatcggtgcc ggtgttggct cgttaggtgt ggtgaatatg ccgattccgg tgattattga
    13561 ccgctcagtg gcgttgatgt cagattttgg ctgcggtgcg aatattgatg gcaaacacta
    13621 ctttaacgtg aactgggagc gtgatgttgc tgtgccggaa attgcagatt tacgcaatgt
    13681 ggtggaaggc gacccaagcc cggacggtaa aggcacactt caaatcaaac gaggtattga
    13741 agtagggcat attttccaat taggcaaaaa atactcagaa gcaatgaaag ccactgtgca
    13801 aggtgaagac ggtaaaccgc tagtgatgac aatgggttgt tacggtatcg gcgttacccg
    13861 tgtggtggca gctgcgattg aacaacatta tgatgatcgt ggtattatct ggccttgtga
    13921 tgaaatggcg ccatttacgg tggcgattgt gccgatgaat atgcacaaat cggaaaaagt
    13981 gcaggcattc gctgaagagt tatacgctaa cttaaaagct caaggcgttg aggtgatttt
    14041 tgatgatcgt aaagaacgcc cgggcgtgat gttcgcggat atggagctta tcggtgtgcc
    14101 gcatatggtg gttattggtg agaaaaacct cgagaacggc gaaatcgaat acaaaaaccg
    14161 ccgcagcggt gaaaaacaga tgatcgccaa agagagctta cttgcgttct taaaagcgaa
    14221 tgtaaaggct taattataaa taacaaaatt gggcgtataa aatacgccct ttaatataaa
    14281 gcagcgagta tttaactaaa gtataaaata ctctattatt tttagaatat aggaaataga
    14341 atgcgtg
//
LOCUS       DANMBQ010000059        14242 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.059, whole genome shotgun sequence.
ACCESSION   DANMBQ010000059 DANMBQ010000000
VERSION     DANMBQ010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14242
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.059"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            4..1086
                     /gene="serC"
                     /locus_tag="PXE92_001449"
     CDS             4..1086
                     /gene="serC"
                     /locus_tag="PXE92_001449"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HDL5760695.1"
                     /translation="MTEIYNFSAGPAMMPKKVLEKAQQELLNWLDQGTSVMEVSHRGK
                     LFMELAAQSEADLRKLYNVPDNYRILFLQGGARGQFAAIPMNLIGKKGKALYLNSGHW
                     SATAAKEARNFAEIDEINILETEPQLKVSRLDFSDIAEQYDYIHYCTNETISGVEIFD
                     IPNVGNTPLVADMSSNILARGIDINKFGVIYAGAQKNLGPAGITIVIIRDDLIGNARK
                     DTPSIWNYATQRDADSMINTPPTFAWYLCSLVFQHLLAEGGLKATEERNLAKATLLYE
                     YLDSSTFYYNTVAHENRSLMNVTFTTGNDELNAKFVAEATACGLQALKGHKVLGGMRA
                     SIYNAMPIDGVKALIEFMKVFEQRNA"
     gene            complement(1143..2120)
                     /locus_tag="PXE92_001450"
     CDS             complement(1143..2120)
                     /locus_tag="PXE92_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HDL5760696.1"
                     /translation="MTLAVAAIIGGLIILVWSADRFVEGAASTARHFGMTPLLIGIVV
                     IGFGTSAPEMLVSASSALSGSPGIALGNAYGSNITNIALILGLTAIIKPLSVNSDVLK
                     KELPILLAVTLLSAYLVYDANVTQLDAIILLAVFFVYMAWTIITAMKSKNDALSLDVD
                     AELTNSAKMGLGKSILWLIIGLVSLVISSQFLVWGAVEVAKFFGVSDLVIGLTIVAVG
                     TSLPELASSIAAARKGEVDLALGNIIGSNLFNTLAVVGIAGAIEPMQVSAEVFSRDVL
                     MMSALTFLLFIFGINLYRRTEGGRINRLEGLLLFAAYVGYNFYLFKTAG"
     gene            2232..4799
                     /gene="glnD"
                     /locus_tag="PXE92_001451"
     CDS             2232..4799
                     /gene="glnD"
                     /locus_tag="PXE92_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HDL5760697.1"
                     /translation="MMKNSNELKTLLSAFTEQQRQAFQSENVLSLLAQRSQFYDQLLQ
                     ALWQDFGLAQYEHITLLAVGGYGREEMFPLSDLDILVLTEKPLEEAIQQRLNELFALL
                     WDSKLQLGTSVRTLEECIQIGKAEISVATNMLEGRFLLGNKSLWLRLKEALYQPDFWD
                     IKAFFRAKMAEKNERYARYHNTSYNLEPDLKHSPGGLRDLHLISWIMLRHYGVSSFVD
                     LLNKGLLYPEEYKELIAAQAVLFRMRFALHLQLKRYDNRLRFDRQLQLSEILGYQGEA
                     NQAVELMMRDYFQATKSISQLSQLLLNSFEQAYVNELQKNAQKQPLDQYFYRQEQQLF
                     VVERKIFKTQPTTMLDLFFHLTNDPTLIANADTLRQLRLCLQQQHEPMCFLPEMREKF
                     VQLFAQPKVISRAIVPMHQLGFLSAYLPQWKGIEGLMQFDLFHIYTVDEHTVRVMLNL
                     ENFSEDPSRAFFPLCHQLFATLSEKPLLYLAALFHDIGKGREGEHAQVGALDMREFAE
                     LHGFSQAQINDMVWLVAEHLTMSITAQRRDIHDPQIISEFAKKVQNQTALSSLLCLTV
                     ADICATSESLWNDWKASLFTQLYQFTLQQLAQNLNYQAVAQEHRLQALELMKFVLSAD
                     ERIALNAFWQPCPERYFLHHTPTQLVWHALHYVKTRRLPMVLISNEYARGGTEIFVCC
                     QDQPQLFARIAQLLSQKRISIHDAQIITTENGVVLDSFIVSERDGDDDLTDERCMQIQ
                     QAMMKMLSLTETGIKFTKKPVKHLSFKRKTRLRFLPPSSKQQTEFELFTLDREGLLAQ
                     IGYIFNRLRLNLINAKITTIGERVEDFFVVSNDQGKALSEQEQLELKAILITELDSE"
     gene            complement(4976..5734)
                     /locus_tag="PXE92_001452"
     CDS             complement(4976..5734)
                     /locus_tag="PXE92_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5760698.1"
                     /translation="MITVKNLHHKIGNATILNNINLTIPNGGITALIGANGAGKSTLL
                     SLIARLQPIQQGEIHLNELNIANTASQTIARQLAILTQDNVIHSRITVKDLLLFGRYP
                     HHQGRITSHDNAIVEEALVRFDLSTFSHRFLNELSGGQRQRALIAMTFCQQTDHILLD
                     EPLNNLDMFHARELMKLLRKLTDELALTTIMVVHDINIAAAYADTIIAMKDGGIKMIG
                     TPKEIITTENLKTVFNLDAEVLECQGKPLVIHHI"
     gene            complement(5754..6630)
                     /locus_tag="PXE92_001453"
                     /pseudo
     CDS             complement(5754..6630)
                     /locus_tag="PXE92_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607611.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
     gene            complement(6683..7651)
                     /locus_tag="PXE92_001454"
     CDS             complement(6683..7651)
                     /locus_tag="PXE92_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL5760699.1"
                     /translation="MFSFFRLNLFLLILLIPISASVGVADFHWSEIFHSSEQSQIFFI
                     SRLPRTLAVILVGATLAVAGMVLQIVLKNRFIEPSMIGTSQSAAIGILLASLLFPTSA
                     LLLKMSIATLSALMGMGLFMLLIRQLPPHQQLMLPLIGIVFGNVIEAISTFIAYETDS
                     LQVLSIWFSGDFSGILAGRYELLWITAILAVVVYVMADQLTIAGLGENISTNLGINYK
                     QMTWLALIVVAMITAIVVVTVGQIPFIGLVVPNIVSRIAGDRLRKNLPAVVVLGANLV
                     LICDILGRAINAPYEVPISTIFGIIGTVIFLYLLLKEKRAEEKARG"
     gene            complement(7745..8644)
                     /locus_tag="PXE92_001455"
     CDS             complement(7745..8644)
                     /locus_tag="PXE92_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5760700.1"
                     /translation="MIKKALFALTATAVFAASAFAKDVTIPTARGEVTFKETPSKIAV
                     FDTGSLDTLQALGVKIDGMPEFKVLSYLKPSADKAVNVGTVFEPDLEALNSLNPDLII
                     VGTRTAKKFDEVSQIAKTIDMTDNGDKLIESGLQRLDSFGKLFNKEAETEKLKAEINT
                     LLDQTKAAVKGKGNGLIILVNGGKISAFGSGYRLSWIHDNLGIPMADSSIKNTGHGQP
                     VSFEFIQKLNPDWLFVLDRIAAIGQEGQSAQQVLDNELVRQTKAWKNGNIVYLSAASY
                     LAPGGYEQMKTDLTNIKTAFEKK"
     gene            8818..10281
                     /locus_tag="PXE92_001456"
     CDS             8818..10281
                     /locus_tag="PXE92_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL5760701.1"
                     /translation="MAEYSGTTQEKMKDKQVEQINISPHSIEAEQAVLGGIMLSNDHW
                     DNVAERVQPHDFYNYAHRIIFEQMAELVRHNKPIDIITLDQALKDKGVLQDVGGFAYL
                     AELSKNTPSAANILAYADIVRDRSDLRSVISAGNQIAEMGYKTKGRNSKEVLDEAERI
                     VFEIAEKRNNANEGPQRIDDILLKTLARMDTLSKNRHNGGVTGVSTGFVDLNKKTAGL
                     QPSDLIIVAARPSMGKTTFAMNLCENASLVDIEDKDDLDEQGNPKKKPAKPVLIFSLE
                     MPADQIMMRMLASLSRVDQTKIRTGQISDDEDTAKISSTMAILQERNNIYIDDSSGLT
                     PTELRSRARRIYRENGGLSLIMVDYLQLMRAPGFADNRTLEIAEISRSLKALAKELEV
                     PVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNDNSDLKGIAE
                     IIIGKQRNGPIGRVRLTFQGQYSRFDNYTGGHYDDEY"
     gene            10271..10576
                     /locus_tag="PXE92_001457"
     CDS             10271..10576
                     /locus_tag="PXE92_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgL domain-containing protein"
                     /protein_id="HDL5760702.1"
                     /translation="MNTKPTQPITLCAIYRSKAKEGMYLYVPKRDQFEQVPETLRQLF
                     GKPEFVMMFNLTGEKPLVRAKNEEVLQLLIEQGYYLQMPPPPENLHKAFIAQQKGEK"
     gene            10576..11025
                     /gene="nrdR"
                     /locus_tag="PXE92_001458"
     CDS             10576..11025
                     /gene="nrdR"
                     /locus_tag="PXE92_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HDL5760703.1"
                     /translation="MRCPFCSTEETKVIDSRLAASGYQIRRRRECISCKERFTTFESA
                     ELVVPYVIKNNGSREPFDAEKLRTGLRRALNKRPVSADDVEKAISQIIIQLQAMGERE
                     VPSRHIGTLAMNALKQLDKVAYIRFASIYLSFSDIEEFIKEIEKLKE"
     gene            complement(11099..11302)
                     /locus_tag="PXE92_001459"
     CDS             complement(11099..11302)
                     /locus_tag="PXE92_001459"
                     /inference="COORDINATES: protein motif:HMM:NF015431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5760704.1"
                     /translation="MNIWQKAVALLADSTVDRLVAENGLVEVLGETENPKFDLTMIYA
                     AHRYPSSIVRAFVGFVLEQVKAN"
     gene            complement(11250..11960)
                     /locus_tag="PXE92_001460"
     CDS             complement(11250..11960)
                     /locus_tag="PXE92_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5760705.1"
                     /translation="MNLNTLRLFVAVIQHGSLSKASERLNVPIATISRQIADLEKELN
                     IQLFDRQKSGVKPTMAGQRLYEQVHLSIEQLATAKEVLFEEQGNLKGKLRLSASPACE
                     PVLAWIADFQAAYPQVQVHCTLTDRLLDLSADGIDVAFRIGQLHGEQFIAKKVGQIGS
                     KWVAHPKFLARFGTPSTVKDLKNFPIAAWAKNEASVITLGTGRQAVEIPYLFSSNDSY
                     AIEYMAKSSGSACRQHGG"
     gene            complement(11957..>14242)
                     /locus_tag="PXE92_001461"
     CDS             complement(11957..>14242)
                     /locus_tag="PXE92_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760706.1"
                     /translation="NYERIGDYQKANLILKNIHNQDDFVQWLSTEQGKKLYSRVGYDK
                     GVWEALSVLLPERFDFEVFEVIDYSKEWSWFEIIVENLFWRQPEKINMQKLHQFFKNS
                     PYFNQATWINILYQLATEINHPLNIKYLHNKLYSFSLADRDEIWTAFIALESDQCPAI
                     ERLLTWCQKSSGQENIEPEALLLGAIAVSWLFTSTDKRSRNGYINALAHLLWNRLEIA
                     LALFKEFIEVNDPYVMEGILSAIHGAVAYSENSSGLKALALEIDNQIFNQPETEEIYP
                     NVLVRDYARHIIEYSLQKDEYSSDDIEIIRERITPPYRSSFPQNLPTNEEIDKKYHSD
                     GQRIIIRSMTTEYGRGMCGYGDFGRYTFEAKFRNWESYKFGNLINVDLLSNYACQMIF
                     EQFGYDDKKHLEFDKETRSRYWRRDDTNKIERIGKKYQWLALYEILARVMDNFPTFSN
                     RYADEIGLEYITNLDNFYLPKTQIKIVPPTKTDVFFQYINQKQCKTKHYFTIQNDELI
                     DDWVKINDFPDVSNLLEVTINDEQWLVLERHDDFRELAKFGQKETYDRQMWLQIRSYL
                     VKESQFSKAKNWLAQQDFMERWMPEGNEHYGMNIHQFFAENTLNEWQEIYRHRENKSP
                     SFKVIPSVDSHTWESTYGNDGISFYAPIPMLYHGMKMKNAIKDGYWVDLQNNLVCFNP
                     EINEKFQNSLLVKKDKFLDFLKEHKLKLVWTVLGEKHAYKESKFLQELSGVYYLYGKN
                     QQVQGSIKHFIQEIEHWGEKQ"
BASE COUNT         4563 a         2796 c         2769 g         4114 t
ORIGIN      
        1 aaaatgacag agatatataa cttcagtgcc ggcccggcaa tgatgccgaa aaaagtactc
       61 gaaaaagcgc aacaagaatt attaaattgg ctagaccaag gcacatcagt gatggaagtc
      121 agccaccgtg gaaagctatt tatggagctg gcggcacaat ctgaagcaga tttacgcaag
      181 ctgtataatg tgccggacaa ttatcgtatt ctatttcttc aaggtggtgc aagggggcaa
      241 tttgcagcca ttccaatgaa tttaatcggt aaaaaaggca aagcgcttta ccttaattca
      301 gggcattggt cggcaacagc agcaaaagaa gcacgtaact ttgcggaaat tgatgaaatc
      361 aatattttag agactgaacc gcaacttaaa gtgagtcgtt tagatttcag cgatattgca
      421 gagcaatatg attatatcca ttattgcacc aatgaaacca tcagtggggt agaaattttc
      481 gatattccga atgtcggaaa taccccgtta gtggcagata tgtcgtctaa tatcttagcc
      541 cgagggattg atatcaacaa atttggagta atttatgccg gagcgcaaaa aaatctaggg
      601 cctgctggca ttacgattgt gattattcgt gatgatttaa ttggcaatgc acgcaaagat
      661 accccatcta tttggaatta tgcaactcag cgagatgctg attcgatgat taataccccg
      721 ccaacttttg cttggtattt atgttcttta gtgttccaac atttactggc agagggtggt
      781 ttgaaagcta ctgaagaacg taatcttgct aaagctacat tgctttatga gtatttggat
      841 agttcaacat tctattacaa tacggtagca cacgaaaacc gttccttaat gaatgtaacc
      901 tttaccacgg gtaatgacga gctaaatgca aaatttgtgg cagaagcgac cgcttgtggt
      961 ttacaggcat tgaaaggcca taaagtatta ggtggaatgc gtgcctcaat ttataacgca
     1021 atgccgattg atggggtaaa agcactcatt gaatttatga aggtatttga acaacgtaat
     1081 gcttaattca agcttaagaa tataaattaa agagccacgt ttgtggctct ttgaatttgg
     1141 cactagcccg cagttttaaa caaatagaaa ttatagccta cataagcggc aaagagtaat
     1201 aagccctcta accgattaat tctgccacct tctgtccgac gatagaggtt gatcccgaaa
     1261 atgaataata agaaggtgag agccgacatc atcaagacat cgcgagaaaa cacttccgct
     1321 gaaacttgca ttggttctat agcaccggca atccccacca cggctaacgt attaaataag
     1381 ttagaaccga taatgttacc taaagctaaa tccacttctc ctttacgagc agctgcaata
     1441 gaagaggcta attcaggtag tgaggtgcct accgccacaa tagtaagccc gattaccaaa
     1501 tcactcacac caaaaaattt agccacttca actgctcccc agactaagaa ttgggaacta
     1561 attactagcg atactaaacc aataattagc caaagaatgg attttcctaa tcccatctta
     1621 gcactattgg ttaattctgc atcaacatct aagcttaatg catcattttt acttttcatt
     1681 gcggtaataa ttgtccacgc catatataca aaaaacacag caagtaaaat aatcgcatca
     1741 agttgagtga cgtttgcatc ataaaccaaa taagcagaaa gcagggtgac agccagtaaa
     1801 atcggcaact ctttttttaa cacatcggaa ttaactgata gtggtttaat tattgcggtt
     1861 aaacctaaaa tcagcgcaat attggtaatg ttagaaccgt aggcattacc gagagcgata
     1921 cccggcgatc cgcttaatgc agaagatgca gatacgagca tctccggtgc agatgtacca
     1981 aaaccaatga ccacaatacc gattaacaat ggtgtcatac caaaatggcg agccgtagag
     2041 gctgcccctt ccacaaaacg atccgcactc caaactaata taattaagcc accgataata
     2101 gcggcaacag caagtgtcat aaactatcct tttagatgaa aaacataaag gcattataag
     2161 cattttagcc aaaataaata taggcaaacg aaaataaatg acctattatt ttgccagttt
     2221 aggaagagat tatgatgaaa aacagcaacg aattaaaaac gcttttatca gcatttacgg
     2281 agcaacagcg gcaagcattt caatccgaaa atgtactcag cttacttgca caacgtagcc
     2341 aattttatga ccaactactg caagcacttt ggcaagattt tggactcgct caatatgaac
     2401 atattaccct attagcggta ggggggtacg gacgtgagga gatgtttccg ctttcggatc
     2461 tggatatctt agtgttaact gaaaaaccgc tagaagaggc tattcagcag cgtttaaacg
     2521 aactatttgc cttgctttgg gacagcaaac tgcaacttgg caccagtgtg cgtacgctcg
     2581 aagaatgtat tcagattggg aaagcagaaa tttcggttgc cactaatatg ttggaagggc
     2641 gatttttatt gggtaataaa tcgctttggc taagattaaa agaagcactt tatcagccgg
     2701 atttctggga tattaaagcg ttttttagag cgaaaatggc ggaaaaaaat gagcgttatg
     2761 cacgttatca taatactagc tataaccttg agccagatct caaacatagc ccgggaggat
     2821 tgcgagatct gcatttaatc tcttggatta tgctacggca ttatggtgta tcttcttttg
     2881 tcgatctcct caataaaggg ctactttacc cggaagaata taaggagctg atcgcagcac
     2941 aagcggtact ttttcggatg cgttttgcac ttcatttgca actgaaacgt tacgataatc
     3001 gccttcggtt tgacagacaa ttacaactga gtgaaatatt aggctaccaa ggcgaagcaa
     3061 atcaagcggt ggaattaatg atgcgagatt attttcaagc cacaaaatct atttcgcaac
     3121 tgagccaatt attgttaaac agttttgaac aagcctatgt aaacgagttg caaaaaaatg
     3181 cacaaaaaca accgcttgat cagtattttt atcggcaaga acagcaattg tttgtggtcg
     3241 aacgcaaaat atttaaaacc caacccacaa caatgttgga tctctttttt catcttacta
     3301 atgaccctac gttaatagcg aatgccgaca ccttacgtca gttgagactg tgtttacagc
     3361 aacaacacga gcctatgtgc tttttgcctg aaatgcgaga gaaattcgta cagctttttg
     3421 ctcaaccgaa agtcataagc cgagcaatag ttccaatgca ccaactgggt tttttaagtg
     3481 cttatctacc gcaatggaag gggatcgaag ggctaatgca attcgaccta ttccatattt
     3541 atacagtcga tgagcatacg gtcagagtca tgttaaattt agaaaatttt agcgaagatc
     3601 caagtcgggc gtttttccca ctatgtcatc agctatttgc aacgctttct gagaaaccgt
     3661 tgctctatct tgcggctctt ttccacgata ttggcaaggg tagagagggc gaacacgctc
     3721 aagttggtgc gctggatatg cgagaatttg cggaactaca cggtttttct caagcacaaa
     3781 tcaatgatat ggtttggctg gtggcagagc atttgacaat gtcgatcacc gcacaaagac
     3841 gagatatcca cgatccgcaa atcatcagcg aatttgcaaa aaaagtgcaa aatcagaccg
     3901 ctttatcttc actactttgt ttaacggttg cagatatttg tgcaaccagt gagagcctct
     3961 ggaatgattg gaaagcctcg ctgtttaccc aattatatca atttacgcta cagcaactgg
     4021 ctcaaaattt gaattatcaa gcagtggcac aagagcatcg cttgcaagca ttagaactga
     4081 tgaagttcgt gctttcagct gatgagcgaa tagcattaaa cgcattttgg caaccttgcc
     4141 cggagcgtta ttttcttcac catacaccga ctcagttggt atggcacgct ctgcattatg
     4201 taaaaactcg ccggttgccg atggttttaa tcagtaatga atatgcccgt ggtggtacag
     4261 aaatttttgt atgttgccaa gatcaacctc aactgtttgc tcgaatcgcc caattactca
     4321 gccaaaaacg cattagcatt cacgatgcac aaattattac tactgaaaat ggtgtagtgt
     4381 tagacagctt tattgtaagt gagcgtgatg gtgatgatga tttaaccgat gagagatgta
     4441 tgcaaattca gcaggcgatg atgaaaatgt taagcttaac tgaaacaggc ataaaattta
     4501 ccaaaaaacc ggtgaaacat ttgtcattta agcgtaaaac tcggctgcgt tttcttcctc
     4561 cgtcatcaaa gcaacaaacc gaatttgaac tttttacctt ggatagagaa gggttgttgg
     4621 cacaaatagg ctatattttt aaccggctcc gattaaattt aattaatgcg aaaattacga
     4681 ctattggtga aagggtagag gatttctttg tggtcagtaa tgatcaagga aaagctttat
     4741 cggaacaaga acagttagaa ctaaaagcca ttctaattac cgaactagat agtgaatgaa
     4801 aacaaccgct tggagtgaag actgcaagcg gtaaattttt caacgtttta ggtaaattaa
     4861 atcacgagtt aagagaggtt gagaattcaa gaaattagaa actaaatata agtttctatc
     4921 gtttagatta ataaattaag acgcaatttt tattaattac catgatcttc aaacgttaaa
     4981 tatgatgaat aactaaaggt ttgccttggc attctaacac ttcggcatca agattaaaca
     5041 ctgtttttaa attttcagtg gtgataatct cttttggggt gccgatcatc ttaattccac
     5101 catctttcat tgcaataata gtatctgcgt aagcagcagc aatgttgatg tcgtgtacca
     5161 ccattatagt agttaaggcg agttcatcgg ttaattttcg taataatttc attaattccc
     5221 gagcatggaa catatctaaa ttattcagtg gttcatctaa taagatatga tcggtttgct
     5281 gacagaaggt cattgcaatt aatgcccgct ggcgttgccc tccggataat tcatttaaga
     5341 atcggtggga gaaagtcgat aaatcaaatc gtaccagagc ctcttctaca atggcattat
     5401 cgtgcgaagt gattctgcct tgatgatgag ggtaacgccc aaataacagc agatctttga
     5461 cggtaatacg gctatgaatc acattatctt gggtcaagat agccagttgt cgagcgatag
     5521 tttgagaagc tgtgttggct atattcagct catttaagtg gatttcaccc tgttggatag
     5581 gttgcaagcg tgcaattaaa gagagcaggg tggatttgcc cgcaccattt gctccgatta
     5641 aagcggtaat accaccattt ggaatggtta aattgatatt attcagaatc gtggcattcc
     5701 cgattttgtg gtgaagattt ttaaccgtta tcattttctt ccttaattta tggttatttt
     5761 ttccgtttta aaatgagata aataaagaca ataccgccaa taaattcaat aacgacactc
     5821 agaacccctt gcattttcag cacttgctcg aagattgcct gccctaaaat taaggtgatg
     5881 gcagagatta aaaaagtcat tggtattcgc acgctatggc aaacagtcgg gctaattgca
     5941 ttaacaatgg cacaaacaag tagccctaga aatagaatcg ggccaacaag tgcggttgaa
     6001 acagacacca acaatccaca acagattagt aattgacgtg aaaattgatg atattctaac
     6061 ccaagcccaa ttgccttatc tttgccaagt aacaaaatat ctaatttatg ccgttgtaac
     6121 cagacccaaa tggcagagag aatagcgata cagcctccaa tccaaagtaa tgtgggggta
     6181 gtcaggttaa atgaggcaaa gaagagcctt gagcaacggc aaactctgtt gggtcgacat
     6241 tcgttgcaac aaattattta ggcttctaaa taagacacca aagatgacac cgattaaaag
     6301 cattcgggtt aaatcggatc gatttcgatt cagtgaacta aatagtaata ttgatgcccc
     6361 tagcattaac aaggtttcaa agaaaaactt atagcttggg tctaactgag taaagcctaa
     6421 accgccaaat aaaaatacta acgaggtttg caatagcaag tagagcgaat cgaaccccaa
     6481 aatacttgga gttaaaatag gattatgtgt gagtgtttgg aatagcaggg tcgaaatacc
     6541 aatcgtataa gcaatagtac agagcaaaat aagctttttg ccacgcagtt gcaatataaa
     6601 gtcccaatta cctttcgcat tataggtcat ataaaacaga atacttgcta ataagattaa
     6661 gcttaaaacg ataaagcgtg atctaaccac gagccttctc ctcagcccgt ttctctttga
     6721 gcaataaata gaggaaaatc actgtcccaa taatcccaaa aatagtagaa atcggcactt
     6781 cataaggggc attgatggct cgccctaaaa tgtcacaaat caggactaaa ttcgcaccta
     6841 acaccacgac cgcaggcaga tttttacgca atcggtcacc tgctatgcga gagacaatat
     6901 tagggacgac caagccgata aacggaatct gtccaaccgt caccacgaca atagcggtaa
     6961 tcatcgccac cacaattaag gcaagccaag tcatttgttt gtagttaatg cctaagttgg
     7021 tactaatatt ttcaccaagg cctgcaatgg ttaattgatc tgccatcaca taaaccacaa
     7081 cagccagaat agcggtaatc cagagcagtt cataccgacc tgccaaaata ccggagaagt
     7141 cgccggaaaa ccaaatcgaa agcacttgta ggctgtcagt ttcataagca ataaaagtgc
     7201 tgatagcttc aataacattg ccaaaaacga tcccgattaa tgggagcatt aattgttgat
     7261 gaggcggtaa ttgacgaatg agcaacataa aaagccccat tcccattaat gcacttaatg
     7321 tggcaataga catttttaac agtaatgctg atgttgggaa aagtaaacta gcaagtaaaa
     7381 taccaattgc cgcactttgg ctagtgccaa tcatactagg ctcaataaag cggttcttca
     7441 gcacaatttg taataccata cctgcaacgg ctaaggttgc accgactaat atcactgcga
     7501 gcgttcttgg taaacggctg ataaaaaaga tctgactttg ttcggaagaa tgaaaaattt
     7561 cactccaatg aaaatctgcc acacccacac tggcactgat tggaatgagc aatattaaaa
     7621 gaaatagatt taatctaaaa aaagagaaca tagtgataaa tagcaagcgg tcatattctc
     7681 tctctttttt acaaatgcag gcacttgcaa aaataggagg aaatctgacc gcttgtaagg
     7741 ttaattattt tttctcaaat gctgttttaa tgttagttag gtcggttttc atctgctcat
     7801 aaccacccgg cgctaaatat gaggcagcac ttagataaac gatattaccg tttttccaag
     7861 ctttagtttg acgaactaat tcattatcca acacttgttg ggctgattga ccttcttgtc
     7921 cgatagccgc aatacggtct aacacaaaca accaatccgg attgagtttt tggataaatt
     7981 caaacgaaac aggctgaccg tgaccggtat ttttaatgct agaatctgcc attggaatcc
     8041 ctaaattatc gtgaatccaa cttaaacgat aacctgaacc aaatgcagaa attttgccac
     8101 cattgactaa aataatcagt ccgttacctt taccttttac tgctgctttg gtttggtcta
     8161 ataaagtatt aatttctgct tttagttttt cggtttccgc ttctttatta aataatttgc
     8221 cgaaagaatc aagacgctgt aatccgcttt cgattaattt atcgccatta tccgtcatgt
     8281 cgatggtttt cgcaatttgg ctgacttcat caaatttttt tgctgtgcgt gtgccaacaa
     8341 tgatcaaatc cggatttaaa gaatttaacg cttctaaatc cggctcaaat accgtaccga
     8401 cattcaccgc tttgtctgca ctcggtttaa gataagaaag caccttaaat tcaggcatac
     8461 cgtcaatttt tacacctaag gcttgtaaag tatccaaact tccggtgtca aacacggcaa
     8521 ttttagacgg ggtttctttg aaagtaacct ctccacgtgc agttggaata gtaacatctt
     8581 tggcaaatgc agaagcagca aacacagcag ttgcggtcaa tgcaaacaag gcttttttaa
     8641 tcattggata actccattta tattgaaaat aattctcaaa gattttaacg aaaattgatt
     8701 ttaagtaaag cggaaaataa caagcgggcg aattttgcct aaaatttgca aatttcaatt
     8761 taattaaaat tccgatacac tatgtacatc aatacgtcat tatagcaaga gaaaaatatg
     8821 gcagaatata gcggaacaac ccaagagaag atgaaagata agcaggttga gcaaattaat
     8881 atctcaccac attcgattga ggcagagcaa gcggtgcttg gtggcattat gctcagtaat
     8941 gatcactggg ataatgttgc tgagcgtgta caaccgcacg atttttacaa ctatgcgcat
     9001 cgaattattt ttgaacaaat ggcggagttg gtgcgccaca ataaaccgat tgatattatt
     9061 acgctggatc aagccttaaa agacaaaggg gtgctgcaag atgtaggagg ttttgcctat
     9121 ttagccgagc tttctaaaaa taccccgagt gcagcaaata ttttagccta tgcggatatt
     9181 gtgcgagatc gttccgattt aagaagtgta atcagtgccg gcaatcaaat tgcggaaatg
     9241 ggctacaaaa cgaaagggcg taactccaaa gaagtgttag acgaggcaga gcgaattgtg
     9301 tttgaaattg cagaaaaacg caataacgcc aatgaaggtc cacaacgtat tgacgatatt
     9361 ttgcttaaaa cactcgctcg aatggatacg ctatctaaaa atcgccataa cggcggagtt
     9421 actggtgttt ctaccgggtt tgttgatctc aataaaaaaa ccgcagggtt acagccttcg
     9481 gatttaatca ttgtggcagc ccgtccttca atggggaaaa ctacttttgc aatgaactta
     9541 tgtgaaaatg cctcattagt ggatattgaa gataaagatg atttagacga acagggtaat
     9601 ccgaagaaaa aaccggcaaa gccagtgcta attttcagcc tggagatgcc ggcagaccaa
     9661 attatgatgc gtatgcttgc ctcactttct cgggtcgatc aaaccaagat ccgaaccggt
     9721 cagatttcag atgatgaaga cactgctaaa atctccagca caatggcaat tttacaagaa
     9781 cgtaataata tctatattga tgatagctcc ggtttaacac cgaccgaatt acgttctcga
     9841 gcgagacgga tttatcgtga aaatggcgga ttaagcttga ttatggtgga ctatctccaa
     9901 ttaatgcgag cgccgggatt tgcagataat cgtactttag aaatcgcaga aatttcccgt
     9961 tctttaaagg cactagcgaa agaattagaa gtgccagtag tcgctctttc tcagctaaac
    10021 cggagtttgg aacaacgtgc cgataaacgt ccggtaaact cggatttgcg tgagtcaggt
    10081 tctattgagc aagatgcaga cttaattatg tttatttatc gtgatgaggt ctataacgac
    10141 aattccgatc tgaaaggcat tgcggaaatt attatcggaa aacaacgtaa cggcccgatt
    10201 ggtcgggtgc gtttaacgtt ccaagggcag tattcccgtt ttgataatta cacaggaggg
    10261 cattatgatg atgaatacta aaccaaccca gccaatcaca ctttgtgcga tttatcgcag
    10321 taaggcaaaa gaaggaatgt atttatatgt gcctaagcgt gaccaatttg agcaagtgcc
    10381 ggaaacatta cgccagttat ttggtaagcc tgaatttgtg atgatgttta atttaaccgg
    10441 tgaaaagcca ttggtgcgtg ctaaaaacga agaagtgtta caattactta tagagcaagg
    10501 ctactatttg caaatgccac ctccgccgga gaatttgcat aaagccttta tcgcacaaca
    10561 gaaaggggaa aaataatgcg ctgcccattt tgttccactg aagaaactaa agtgatcgat
    10621 tcacggcttg cagcaagcgg ttatcaaatt cgccgccgcc gtgaatgtat aagctgtaaa
    10681 gaacgtttta ctacctttga atcggccgaa ttagttgtgc cttatgtgat caaaaataat
    10741 ggtagccgag agccgtttga tgccgaaaaa ttaagaacag ggttaagacg tgcattaaat
    10801 aaacgccctg tcagtgctga tgatgtcgaa aaagcaatta gccaaatcat tattcagctg
    10861 caagcgatgg gcgaacgaga agtgccgagt cgccatatcg gtacattggc aatgaacgca
    10921 cttaaacaat tagacaaagt agcatatatc cgctttgcct ctatttattt aagctttagt
    10981 gatattgaag agttcattaa agaaattgaa aaattaaaag agtagttgca aaaaaacata
    11041 aaaaaatgac cgcttgtgag tttaaaatcc acaagcggtc atttttcttt aaaaatactc
    11101 aattagcttt tacttgttcc aacacaaacc ctacaaacgc ccgcacaatg ctagacggat
    11161 aacgatgggc ggcataaatc atcgtcaaat caaatttggg gttttctgtc tcacccaaga
    11221 cttccaccaa gccattttct gccaccaatc tatccaccgt gctgtcggca agcagagcca
    11281 ctgctttttg ccatatattc aatggcatag ctgtcattgc tggaaaaaag atagggaatt
    11341 tctaccgctt gtctgccagt gcctagcgtg atgacgcttg cttcattttt tgcccaagcg
    11401 gcaatgggga aatttttcaa atctttgacg gtgctgggcg tgccaaagcg tgccaaaaat
    11461 ttagggtgtg ccacccattt actgccgatt tgccccactt ttttggcgat aaactgttcg
    11521 ccgtgtagtt gcccaatccg aaacgccaca tcaatgccat ctgccgacaa atccaaaaga
    11581 cggtcggtca gcgtgcaatg cacttgtact tgtggataag ctgcctgaaa atcagctatc
    11641 cacgccaaaa caggctcgca ggcagggctt gccgacaggc gtaatttacc ctttaaattg
    11701 ccttgctctt caaacaacac ttctttggca gtggcaagct gttcaatgga caaatgcacc
    11761 tgttcataca ggcgttgccc tgccattgtg ggtttaacgc ctgatttttg gcggtcaaag
    11821 agttgaatgt taagctcttt ttccaaatcg gcaatttgac ggctaatggt tgcaatcggc
    11881 acattgagtc gctcggaggc tttggagaga ctgccgtgct ggataacggc gacaaagagg
    11941 cggagggtgt tgaggttcat tgtttttctc cccaatgttc aatttcttga ataaaatgtt
    12001 taatactgcc ttggacttgt tgatttttac catatagata ataaacgcct gaaagttctt
    12061 gtaaaaattt actttcttta taagcgtgtt tttcacccaa cacagtccaa actaacttta
    12121 acttatgctc ttttaaaaaa tccaaaaatt tgtctttttt aaccagtaag ctattttgaa
    12181 atttttcatt tatctctgga ttaaagcaaa ccaaattatt ttgtaaatca acccaataac
    12241 catctttaat cgcatttttc attttcattc cgtgataaag cataggaatt ggcgcataaa
    12301 atgaaatgcc gtcattgcca taagtagatt cccaagtgtg agaatcgaca ctaggtatta
    12361 ccttaaatga aggcgattta ttttccctat gtcgataaat ttcttgccac tcatttaatg
    12421 tattttcggc aaaaaattga tgaatattca ttccatagtg ttcattacct tctggcatcc
    12481 atctttccat aaaatcttgt tgtgccaacc aattttttgc ttttgaaaat tgagattctt
    12541 taactaaata acttctaatt tgtaaccaca tttgcctatc ataagtttct ttttgcccaa
    12601 attttgctaa ttcacgaaaa tcatcgtgtc tttctagaac aagccactgt tcatcattaa
    12661 tcgttacttc caaaagatta ctaacatcag gaaaatcatt tatttttacc caatcatcaa
    12721 ttaattcatc attttgaatg gtaaaatagt gttttgtttt acattgtttt tgatttatgt
    12781 attgaaaaaa tacatctgtt ttagttggcg gtacaatttt aatttgggtt ttgggtagat
    12841 aaaagttgtc caaattagta atatattcaa gccctatttc atcggcatag cgattagaaa
    12901 aagtaggaaa attatccatc acccttgcca agatttcata caaagccaac cattgatatt
    12961 tcttgccaat tcgctcaatt ttattagtat catctcttcg ccaatatctt gaacgagttt
    13021 ctttatcaaa ctcaaggtgc ttcttgtcat catagccaaa ttgctcaaaa atcatttggc
    13081 aagcataatt acttaataaa tcaacattga tgagattgcc gaatttataa ctctcccaat
    13141 ttcggaattt ggcttcaaaa gtatatctgc caaaatcacc atatccacac ataccacgac
    13201 catattcagt tgtcattgaa cggataatga ttctttgtcc atcagaatga tattttttat
    13261 caatttcttc attggttggt aagttttggg gaaatgaact tctataaggt ggcgtaattc
    13321 tttctctgat tatctcaata tcatctgatg aatattcatc tttttgcaaa gagtattcaa
    13381 taatatggcg agcataatca cgaaccaaaa cattgggata aatttcttct gtttcaggtt
    13441 gattaaatat ttgattatct atctctaatg caagtgcttt taagccagat gaattttcag
    13501 aataagcaac agctccgtga atggcagata aaataccttc cataacataa gggtcattaa
    13561 cctctataaa ttccttgaat aacgccaatg caatttccaa tctattccat aataaatgag
    13621 ccagtgcatt aatatagcca tttctacttc gtttatcggt agaagtaaat agccaactaa
    13681 cagcaattgc acccaataat agtgcttcgg gttcaatatt ttcttgacca cttgatttct
    13741 gacaccaagt tagtaatcgt tcaattgctg ggcattgatc agactccaaa gcaataaaag
    13801 ctgtccaaat ctcatctcta tctgccaaag aaaaagaata aagtttgtta tgtaaatatt
    13861 ttatatttaa tgggtggtta atttcggtag ccagttgata taaaatatta atccaagttg
    13921 cttgattaaa atatggacta tttttgaaaa attgatgtag tttttgcata ttgatttttt
    13981 caggctgcct ccaaaagaga ttttctacaa taatctcaaa ccaagaccat tcctttgaat
    14041 aatcaatcac ttcaaatact tcaaaatcaa atcgttctgg caacaataca cttaatgctt
    14101 cccatacgcc cttatcatag ccaactctac tatatagctt ttttccttgt tcagtgctta
    14161 accattgaac aaaatcgtct tgattatgaa tattttttaa tattaaattg gccttttgat
    14221 aatccccaat tcgttcataa tt
//
LOCUS       DANMBQ010000060        13934 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.060, whole genome shotgun sequence.
ACCESSION   DANMBQ010000060 DANMBQ010000000
VERSION     DANMBQ010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13934
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.060"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(89..1024)
                     /gene="ftsX"
                     /locus_tag="PXE92_001462"
     CDS             complement(89..1024)
                     /gene="ftsX"
                     /locus_tag="PXE92_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HDL5760707.1"
                     /translation="MIRSFSKLGAQTNYSLRAVWQDLMQRKLGTFLTVLVIAVSLTIP
                     TVSYLLWKNTHEAATQFYPEPQLTVYLHKNLAEHDVNTVVDRIRAFETDKIESFNYIS
                     RQQSLDEFRSWSGFGEALDILDENPLPAVVTLKPKANFNNADTMVELRNGLQQIKGVQ
                     EVRLDNGWLEKLTALTWLIARIAVVCTLLMLLAVFLVIGNSVRTDVANSKAAIEVQQI
                     LGATDHFIARPFLYTGMIYGLFGSLLAVLFSAVTISYFTGVVKYVTDMFTVQFELNGL
                     DFSEAFFLVVLCVFIGWLSAKIATMRNIFRIGSRG"
     gene            complement(1034..1687)
                     /gene="ftsE"
                     /locus_tag="PXE92_001463"
     CDS             complement(1034..1687)
                     /gene="ftsE"
                     /locus_tag="PXE92_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HDL5760708.1"
                     /translation="MIKFTNVNKVYKGGKPALQGIDFHLPAGGMAYITGHSGAGKSTL
                     LKLIMGIERANGGQILFNGHDITRLAHHELPFLRRQIGMVHQDYRLLTDRTILDNVAL
                     PLIILGMNQAIVEREARIALERVGLADKANYLPLHLSGGEQQRVDIARAIVHRPTLLL
                     ADEPTGNLDEKLSFEIFRLFEEFNQAGTTVLIATHDTNIISKRPKPCLVLEQGHLKF"
     gene            complement(1680..3176)
                     /gene="ftsY"
                     /locus_tag="PXE92_001464"
     CDS             complement(1680..3176)
                     /gene="ftsY"
                     /locus_tag="PXE92_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDL5760709.1"
                     /translation="MSEKKKGFWSWLGFGKKEEAEQKEIQQEQESIQPEQPVIVEPET
                     EKSFSEKLDELEDKIEEKVDQLEDYFEEKEEKIEQFAEQVEDTIEQKVEDFKEFVEEK
                     VEEAKAFFDDVEDKIEQTFEEQKGEQAVENLQNIATEQLDLNEQEQVTYQVEEAVAEE
                     VAETELVNNVQDTVEESTIQDEYQEKPSQGGFFSRLIQGLIKTKQNIGSGFRNFFRGK
                     KIDDELFEELEEQLLVADLGMPTTQKIINNLTQHATKQQLKDADLLYQQLKVELGEVL
                     KPVAQPLVLEAKKPYVILMVGVNGVGKTTTIGKLARKFQQEGKSVMLAAGDTFRAAAV
                     EQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAAKGIDVLIADTAGRLQNKNNLMD
                     ELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGLTGITLTKLDGTAK
                     GGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEFIEALFSHEDEQND"
     gene            3255..3845
                     /gene="rsmD"
                     /locus_tag="PXE92_001465"
     CDS             3255..3845
                     /gene="rsmD"
                     /locus_tag="PXE92_001465"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HDL5760710.1"
                     /translation="MKKNRNSPQSVQQMGEVRVIAGLWRGRKLPVLNAEGLRPTTDRV
                     KETLFNWLMHDIAHSRCLDCFAGSGSLGIEALSRQAQAVVFLEKFANAANQLKKNLQA
                     LKSEQGSVIHTDTLAYLAQKNNGEPFNIVFIDPPFHQGFVPQVLNLLAENNWLAPNAI
                     LYVETEKNHPPLELPQGWQILKEKAAGMVVSRLIQL"
     gene            3929..4243
                     /locus_tag="PXE92_001466"
     CDS             3929..4243
                     /locus_tag="PXE92_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HDL5760711.1"
                     /translation="MKKLTPDEAIDIAYDIFLEMAGENLDPADILLFNLQFEERGAVE
                     MVETSEDWDQEIGTLIDPDAFAEVWVGLVNEQDEMDDVFARFLISHDEENREYHVVWK
                     EK"
     gene            4256..4768
                     /gene="hpaC"
                     /locus_tag="PXE92_001467"
     CDS             4256..4768
                     /gene="hpaC"
                     /locus_tag="PXE92_001467"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HDL5760712.1"
                     /translation="MANIDTNQPIEASLKFREAMAHLSSAVSIVTTNGVAGKAGLTVS
                     SVCSVTDSPPTLLFCINKNSHVHDIIQQNGKVCVNVLSHEQEDLAKHFAAILESTMEE
                     RFGWDIWNNGFDDQPVLRSAISALQGNIVDTHAVGTHTIFVVEVSHIDVEPNHSLVYF
                     ARQFRSVNID"
     gene            4886..5758
                     /gene="tehB"
                     /locus_tag="PXE92_001468"
     CDS             4886..5758
                     /gene="tehB"
                     /locus_tag="PXE92_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HDL5760713.1"
                     /translation="MENLICYKQMPVWTKATLPQMFQEKHNTKVGTWAKLTILKGSLK
                     YYELTEEGEIIKEDIFDANHQRPMVEPQLWHKVEALSDDLECQLAFYCKPEDYFAKKY
                     NLTATHSEVLNAVNYTKGGKALDLGCGRGRNALYLNLLGFDVTAVDHNQESIDFLNYM
                     IEKEQAQNITTAVYDINEATIGSQNGEYDLIISTVVMMFLNRERIPAIIENMQKNTKV
                     GGYNLIVCAMSTDDYPCPMPFSFTFKEGELADYYQGWELVKYNEDLGHLHKTDENGNR
                     IQLRFATMLAKKIS"
     gene            5896..6933
                     /gene="purM"
                     /locus_tag="PXE92_001469"
     CDS             5896..6933
                     /gene="purM"
                     /locus_tag="PXE92_001469"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011962107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDL5760714.1"
                     /translation="MSNTQLSYKDAGVDIHAGNELVERIKPDVKRTRRPEVMGGLGGF
                     GALCALPTKYKEPILVSGTDGVGTKLRLAIDLNKHDTIGQDLVAMCVNDLVVQGAEPL
                     FFLDYYATGKLEVDVATNVVKGIADGCVISGCALVGGETAEMPGMYHEGDYDLAGFCV
                     GVVEKSKIIDGSTVKTGDALIALASSGPHSNGYSLIRKVLEVSRSNPATDLLEDKPLS
                     EHLLAPTKIYVKSILKLVEEVDVHAIAHLTGGGFWENIPRVLPESAKAVIDESSWQWP
                     AIFSWLQEKGNISRYEMYRTFNCGVGMVIALPERDVEKALTLLKESGENAWLIGKIED
                     LGTGSEQVEIR"
     gene            7011..7289
                     /locus_tag="PXE92_001470"
     CDS             7011..7289
                     /locus_tag="PXE92_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HDL5760715.1"
                     /translation="MQLFWPIYFVLMNLAALYLMYSDKQKAIKKEWRVPEITLLSFCL
                     LGGAIGVYLGMKYFRHKTQHWYFHVAVVLSTFAWLIGLPYFYLALSSY"
     gene            7432..8859
                     /gene="aspA"
                     /locus_tag="PXE92_001471"
     CDS             7432..8859
                     /gene="aspA"
                     /locus_tag="PXE92_001471"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HDL5760716.1"
                     /translation="MSDVRIEHDLLGEREVPNSAYWGIHTLRAIENFNISNVTISDVP
                     EFVRGMVMVKKATALANGELGAIPKKIAKAIVAACDEVLVKGRCLDQFPSDVYQGGAG
                     TSVNMNTNEVIANLALEILGEAKGKYDIVNPMDHVNASQSTNDAYPTGFRIAVYNSIT
                     KLINKITYLQTAFENKATEFSDVLKMGRTQLQDAVPMTLGQEFKAFAVLLDEEVRNLK
                     RTAELLLEVNLGATAIGTGLNTPEGYSTLAVKYLAEVTQLPCSLSENLIEATSDCGAY
                     VMVHGALKRTAVKLSKVCNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEV
                     VNQVCFKVIGNDTTVTFAAEAGQLQLNVMEPVIGQAMFESIELLSNACINLRDKCIDG
                     ITANRDICQNYVFSSIGIVTYLNPFIGHHNGDIVGKICATTGKSVREVVLERGLLTEE
                     QLDDILSIENLMNPTYKAKRFTEEE"
     gene            complement(8934..10952)
                     /gene="rep"
                     /locus_tag="PXE92_001472"
     CDS             complement(8934..10952)
                     /gene="rep"
                     /locus_tag="PXE92_001472"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HDL5760717.1"
                     /translation="MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCG
                     YSPKQIAAVTFTNKAAREMRERVDHSIGKENSKGLTISTFHTLGFEILKREYKLLGFK
                     SGMTLFDEQDQIALLKHLLPENVTEDKDLLKALIATISNWKNDLLSPERVLTRVRDER
                     ERVFSHFYQLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKSRWQQKIRYLLVDEYQD
                     TNTSQYELIKLIVGNEPNFTVVGDDDQSIYSWRGAKPENMQRLREDFDLQVIKLEQNY
                     RSSQRILHCANILIDNNDHLFSKRLFSELGQGEKLQVIEAKNEEHEAERIVGELIAHR
                     FSKKTKYKDYAILYRGNHQSRLLEKLLMQNRIPYKISGGTSFFARAEIKDMMAYLRLV
                     VNQDDDAAFLRIVNTPKREIGAATLEKLGILANEKQVSLFEAIFDFELIQRLTPKPYQ
                     ALQDFARWIVEIADQADRSDPIEAVKDLLAKIQYEAYLYEMAANPKVAEMQSRNVQTL
                     FEWVQAMLEGDEIEPPMNLVQVVNRLTLRDMLERGEEDDEADQVQLMTLHASKGLEFP
                     HVFLIGMEEGILPHQTSLDEDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKP
                     EPSRFLLELPQDDLEWESEKPRMTEQEKEAKSSANIANLMAMLKANKK"
     gene            11200..12315
                     /gene="potA"
                     /locus_tag="PXE92_001473"
     CDS             11200..12315
                     /gene="potA"
                     /locus_tag="PXE92_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HDL5760718.1"
                     /translation="MEKVEQKAIIELKNVTKSYGSKTILKNLNLTINDGEFLTILGPS
                     GCGKTTALRLIAGFEDLTEGSIILDGQDVSNVPAEQRPVNTVFQSYALFPHMTIFENV
                     AFGLRMQKVPNAEIEPRVMEALRMVRLEDRAQQKPAQLSGGQQQRIAIARAVVNKPKV
                     LLLDESLSALDYKLRKEMQNELKALQRQLGITFIFVTHDQEEALTMSDRIIVMNAGKI
                     AQDGTPREIYEEPSNLFVARFIGEINVFDATVIERVDATNVKANVEGRICNIKVEDLE
                     VQPNQKLKVLLRPEDIVIEELDENESSKAIIGHIIDRNYKGMTLESSVRLDHNGMNVL
                     VSEFFNEDDPNIDHEVGQKVALTWYEGWEVVLNDEGE"
     gene            12302..13165
                     /gene="potB"
                     /locus_tag="PXE92_001474"
     CDS             12302..13165
                     /gene="potB"
                     /locus_tag="PXE92_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005698572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HDL5760719.1"
                     /translation="MKANNKFQNGAVATIFGWLLLFVLVPNVLVLIISFLTENRQSQY
                     FVDFAFSFDAYKSLFNDTYAAVLWNSLYMAGIATFFCLIIGYPFAFFIAKMPERIRPF
                     LLFLVVLPFWTNSLIRIYGIKIFLGVKGFLNESLMALGIISEPMRLLNSEIAIIIGLV
                     YILLPFMILPLYSSIEKIDNRLLEAAKDLGANAFQRFIKVTIPLTMPGIVAGCLLVLL
                     PAMGMFYVADLLGGGKTPLVGNIIKSLFLNTNQFALGSAVSIALTILMALMLYVYYRA
                     NKLLNKKVELE"
     gene            13165..13932
                     /gene="potC"
                     /locus_tag="PXE92_001475"
     CDS             13165..13932
                     /gene="potC"
                     /locus_tag="PXE92_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HDL5760720.1"
                     /translation="MKKMFRNLFMLVVFAYLYIPIIILVINSFNEDRFGLNWKGFTWN
                     WYERLFSNDTLVQATLNSLTIAFFAATFSTILGALTSIALYRYRFRGKKLVGGMLFVV
                     MMSPDIVMAVSMLVLFMILGIKLGFISLLIAHITFCLPYVVIAISSRLSDFDGKMLEA
                     AKDLGASEVTILRKIILPLALPSIISGWLLSFTISLDDVIVSSFVTSPSYEVLPLKIF
                     SLVKTGVTPEVNALATIMIIFSLTLVVLSQLVVKKKV"
BASE COUNT         4065 a         2919 c         2727 g         4223 t
ORIGIN      
        1 agcaataata tattgcttat agtaaaaaac caagttccta ggaactggtt tttatctgca
       61 attatttctc taaaaacaac cgcttgtatt agcctctact accaatacgg aaaatatttc
      121 gcattgtcgc aatttttgcc gacagccagc caataaacac acaaagcacc actaagaaga
      181 aggcttcgct gaaatctaat ccgttcagtt caaattgtac ggtaaacata tcagtcacat
      241 acttcactac accggtgaaa tagctaatcg ttaccgcact aaacagcacc gctaacaggc
      301 tgccaaacaa gccgtaaatc atacctgtgt ataaaaacgg acgggcaata aagtgatcag
      361 ttgcccctaa aatttgttgg acttcaatcg ctgctttgct attggcaaca tcggttcgca
      421 cactgtttcc aatcactaaa aaaactgcca acagcattaa taaggtacac accaccgcaa
      481 tacgagcaat cagccaagtt agagcagtta atttttccag ccagccgtta tctaaacgaa
      541 cctcctgcac ccctttaatt tgttgcaaac cgttgcgtag ctccaccatc gtatcagcat
      601 tattaaaatt tgctttcggt tttaaggtaa cgaccgcagg caacgggttt tcatctaaaa
      661 tatctaacgc ttcaccaaag cctgaccaag aacgaaattc gtctaaactt tgttggcgag
      721 aaatatagtt aaatgactca attttatccg tctcaaaagc acgaatgcga tcaacaacgg
      781 tattcacatc gtgttctgcc aaatttttgt gcagataaac ggttaattgt ggctcagggt
      841 aaaattgtgt tgctgcctcg tgggtattct tccaaagtaa ataactcacg gttggaatcg
      901 taagtgagac cgcaatcacc agcaccgtca gaaaagtgcc gagcttgcgt tgcattaaat
      961 cttgccaaac cgctcttaaa gagtagttgg tttgagcacc taatttacta aatgaacgaa
     1021 tcataatatt tccttaaaat ttaagatgcc cttgctccag cactaaacac ggctttggac
     1081 gctttgaaat aatattggta tcgtgggtgg caatcagcac cgttgtgccg gcttgattaa
     1141 attcctcaaa caaacggaaa atttcaaacg agagcttttc atctaagttt ccggttggct
     1201 catcggctaa taacagcgtt gggcgatgaa caatggccct ggcaatatcg acacgttgtt
     1261 gctcaccgcc ggaaaggtgc aacggcagat agttcgcttt atctgccaag ccaacacgct
     1321 caagggcaat gcgggcttca cgctccacaa tcgcttggtt cattcccaaa ataatcaatg
     1381 gtaatgcgac attatccaaa atggttcggt cggttaataa gcgataatct tgatgcacca
     1441 tcccgatttg gcggcgtaaa aacggcaatt catgatgagc aagtcgggta atatcgtgtc
     1501 cgttaaacaa aatttgcccg ccattggcac gctcaatccc cataattaat tttaatagcg
     1561 tgcttttccc cgcaccggaa tgcccggtaa tatatgccat tccaccggca ggtaggtgga
     1621 aatcaatgcc ctgtaaggct ggctttccgc ccttataaac cttgttcaca ttagtgaatt
     1681 taatcattct gttcgtcctc gtggctaaat aaggcttcaa taaattcttc tgcattaaac
     1741 gggcgtagat cttcaatttt ctcgcccacc ccaataaagc ggatcggaat attgaattga
     1801 tcggcaatcg caaaaatcac gccacctttt gccgtaccgt ctaatttagt taaggtgata
     1861 ccggttaaac ccactgcctc attaaacaat ttcgcttggc tgatcgcatt ttgcccagtg
     1921 ccggcatcaa gcgtaagcat aatttcgtgc ggtgcggttt catcatattt tttcatcacc
     1981 cgcacaattt tcttcaactc gtccatcagg ttatttttgt tttgcaaacg ccctgcagta
     2041 tcagcgatta gcacgtcaat cccttttgcc gcagcggatt gcatcgcatc aaaaatcacc
     2101 gaggcagaat ccgaaccggt gctttgtgcc accaccggaa tgttatttcg ctctccccaa
     2161 acctgtagct gttcaactgc cgccgctcgg aacgtgtctc ctgctgctaa cattaccgat
     2221 ttgccttctt gttggaattt acgggcaagt ttgccaatgg tagtggtttt ccccacgcca
     2281 ttcacaccaa ccattaaaat gacatacggt tttttcgctt ccaacactaa cggttgagcc
     2341 accggtttta gcacttcacc cagttccact ttcaactgtt gatacaacaa atctgcatct
     2401 tttaattgtt gcttggtagc atgttgcgtt aaattgttga tgattttttg tgtggtcggc
     2461 atacctaaat ccgccacaag caactgctct tccagctctt caaataactc atcatcaatt
     2521 ttcttgccac ggaagaaatt acggaagccc gaaccaatat tctgcttggt tttaatcaag
     2581 ccttgaatta aacgactgaa gaaaccgcct tgactcggtt tttcttgata ttcatcttgg
     2641 atagtagatt cttcaactgt gtcttgaaca ttatttacta attcagtttc agcaacttct
     2701 tcagccacag cctcttcgac ttgataagta acttgctctt gttcgttgag atctaactgc
     2761 tcagttgcaa tattttgaag attttcgacc gcttgttcgc ctttttgttc ttcaaatgtt
     2821 tgttcgattt tatcttcaac atcatcaaag aacgctttcg cctcttcaac tttttcttca
     2881 acaaactctt tgaaatcttc gactttttgt tcaatggtat cttctacttg ctcagcaaat
     2941 tgctcaattt tttcttcttt ttcctcaaaa tagtcttcta actgatctac cttttcttca
     3001 attttatctt ccagctcatc taatttttca gaaaacgact tctcagtttc cggttcaaca
     3061 ataacaggct gttccggttg aatactctct tgttcttgtt gaatctcttt ctgttcagct
     3121 tcttctttct taccaaatcc aagccaagac caaaaccctt ttttcttctc tgacatattt
     3181 ttctctcatt tctcgtaaaa atagactaaa cttacatagt ctatcaaaaa atcccttatt
     3241 ttcctttagt gagtatgaaa aaaaatcgaa attcccccca atctgttcag caaatgggcg
     3301 aagtacgggt tatcgccgga ctgtggcgag gcagaaaatt acctgtacta aatgccgagg
     3361 ggcttcgccc gacaaccgat agagtaaaag aaacgctgtt taactggtta atgcacgaca
     3421 ttgctcactc acgctgtctt gattgctttg caggcagtgg ctctctgggc attgaagccc
     3481 tttcccgcca agcacaagcg gtcgtttttt tggaaaaatt tgcaaatgct gccaaccagt
     3541 taaagaaaaa tctccaagca ttaaaatccg aacaaggtag cgttattcac actgacaccc
     3601 tcgcctattt agcacaaaaa aataacggtg agccatttaa catcgtattt atcgatccgc
     3661 cttttcatca agggtttgta cctcaagtgc taaacttgct ggcagaaaat aactggctcg
     3721 ccccgaatgc gattttgtat gtggaaaccg agaaaaatca cccgccatta gagctaccgc
     3781 aaggctggca aattttaaag gaaaaagcag ccggaatggt ggtaagccgt ctgattcagc
     3841 tataatcttt ttgtttttta taactaaaaa atataaaata aaacttatct atctaacatt
     3901 ttattaacac tcaaattaga ataacgaaat gaaaaaatta acccctgatg aagccattga
     3961 tattgcctac gatattttct tagaaatggc aggcgaaaat ttagatcctg ccgatatttt
     4021 actgttcaac ctccaatttg aagagcgtgg tgcagtggaa atggtcgaaa cttctgaaga
     4081 ctgggatcaa gaaatcggga ctttaattga ccctgatgcc tttgccgaag tttgggttgg
     4141 cttagtcaat gaacaagatg aaatggacga tgtattcgcc cgtttcttaa tttcccacga
     4201 tgaagaaaac cgtgaatatc acgttgtttg gaaagaaaaa taaaaaggag aaaaaatggc
     4261 taatatcgac actaatcaac caatagaagc ctcgcttaaa tttcgtgaag caatggctca
     4321 cttatcttct gcggtgagca ttgtgacaac caatggcgta gccggcaaag cagggctgac
     4381 ggtttcgtct gtttgttccg ttaccgattc cccaccaacg ctcttatttt gcattaataa
     4441 aaacagccac gttcacgata ttatccaaca aaacggcaaa gtatgcgtta atgtgttaag
     4501 ccacgaacaa gaagacttag caaaacattt tgccgccatt ttagaaagta caatggaaga
     4561 acgctttggt tgggatattt ggaacaacgg ctttgacgat cagcctgtgt tacgcagtgc
     4621 tatttctgct ttacaaggca atattgttga tacgcacgca gtgggtacgc atactatttt
     4681 tgtggtagaa gtgagccata ttgacgtaga gccgaaccac agtttagttt attttgcccg
     4741 ccaatttaga agcgtgaaca ttgactaaaa tatatttaac agaaatttga tcaaatccga
     4801 cttttttagt cggatttttt atttcctgtt tttaaaacag tgctaaaatt ttgccgttta
     4861 tgtttgactg acaaaaggaa acaaaatgga aaatttaatt tgctacaaac aaatgccggt
     4921 gtggacaaaa gcaaccttac cacaaatgtt ccaagaaaag cacaacacca aagtcggaac
     4981 ttgggcaaaa ctcaccattc tcaaaggttc tctcaaatat tatgaattaa ccgaagaggg
     5041 agaaattatc aaggaagata tttttgatgc aaaccaccaa cgcccaatgg ttgagcctca
     5101 actttggcat aaggttgaag ctctttctga cgatttagaa tgccagttgg ctttctattg
     5161 caagccggaa gattattttg ctaaaaaata taatctgacc gctacccatt cagaagtgct
     5221 aaatgccgtc aattatacca aaggtggcaa agcgttagat ttaggttgcg ggcgaggacg
     5281 caatgcactt tatctgaatt tactgggttt tgatgtcact gctgttgatc ataatcaaga
     5341 aagcattgat tttctcaact atatgatcga aaaagaacaa gctcaaaaca ttactaccgc
     5401 tgtttatgat attaacgagg caactatcgg ctcgcaaaac ggtgaatatg acctgattat
     5461 ttccactgtt gtaatgatgt tcttaaaccg tgaacgcatt cctgccatta ttgagaatat
     5521 gcagaaaaac actaaagtcg gcggttataa cttaatcgta tgtgcaatga gtaccgatga
     5581 ctacccttgc ccgatgccgt tctcctttac cttcaaagaa ggcgagctcg ccgattatta
     5641 tcaaggttgg gaattagtca aatataacga agatttagga catttacaca aaactgatga
     5701 aaacggcaac cgcattcaac tacgttttgc gacaatgttg gcgaaaaaaa tcagctaaac
     5761 ttaaccgctt gcagggggaa ttagcttccc cctaattcat caaatccatt ctatttattt
     5821 tcactttttc attccgcaaa cgtttgcttg tgctataatg gcttcgtttt ttagtcattt
     5881 actgttgagg ttaaagtgag caacacacaa ctaagttaca aagatgccgg cgttgatatt
     5941 cacgcaggaa acgagttagt cgaacgaatc aagcctgatg ttaaacgcac ccgtcgccct
     6001 gaagtaatgg gcggattagg tggttttggt gctttatgtg ctttaccgac aaaatataaa
     6061 gagccgattt tagtttccgg taccgatggc gtcggcacaa aattacgctt agccattgac
     6121 ttaaacaaac acgatactat cgggcaagat ttggtagcga tgtgtgtgaa tgaccttgtc
     6181 gtgcaaggtg ctgaaccgct tttcttctta gattattacg ccaccggtaa attagaggtt
     6241 gatgtagcca ccaatgtcgt caaaggcatt gcagacggtt gcgtgatttc aggttgtgct
     6301 ttagtgggag gtgaaacggc tgaaatgccg ggaatgtacc acgaaggcga ttacgattta
     6361 gccggattct gtgtcggtgt ggtagaaaaa tctaaaatca ttgacggttc aacggtgaaa
     6421 accggtgatg ccttaattgc attagcgtcc agtggcccgc attccaacgg ctattcgtta
     6481 attcgtaaag tattggaagt cagccgatcc aatcctgcaa ccgatttatt ggaagacaaa
     6541 cccttaagcg aacacttatt agccccaact aaaatttatg taaaatcaat cctaaaatta
     6601 gttgaagaag ttgatgttca cgctatcgct cacttaaccg gtggcggttt ctgggaaaat
     6661 attccacgcg tattgccgga atctgccaaa gcggtgattg atgaatcgag ctggcaatgg
     6721 ccggcgatat ttagctggtt acaggaaaaa ggcaatatca gccgttatga aatgtaccgt
     6781 actttcaact gcggtgtcgg aatggtgata gccttacctg agagagatgt cgaaaaagcc
     6841 cttactcttc ttaaagagag tggtgaaaat gcgtggctta tcggtaaaat tgaagactta
     6901 ggcaccggta gcgagcaagt tgaaatccgc taatttgcaa aataaatgct aaaattgacc
     6961 gcttgtagta actgatctgc aaacggttaa atttttattg aggaatgcaa atgcaactat
     7021 tttggcctat ctactttgtc ttaatgaacc tagctgcctt atatttaatg tatagtgaca
     7081 aacaaaaagc gatcaaaaaa gaatggcgag tgccagaaat tactctcctc tctttttgcc
     7141 tcttaggtgg ggctatcggt gtttacctag gtatgaaata ctttcgccat aaaacccaac
     7201 attggtattt ccacgtcgct gttgtgcttt ctacttttgc ttggctgatt ggcttgcctt
     7261 acttttattt agctttatca tcatattaat ttatcattac tttttttaat ccgaaagccc
     7321 aatttatatc ctagtccgct cacaaaaaat ttgatttaga tcgcattatt tgtctattaa
     7381 aatcgttatt atctaccaaa atcgattgtc atttatttta aggagatgaa tatgtcagat
     7441 gtgcgtattg aacacgattt acttggtgaa agagaagtac ctaatagtgc ttattggggc
     7501 attcatacat taagagcgat tgagaatttt aatatctcaa atgtcaccat ttctgatgta
     7561 cctgaatttg tgcgtggcat ggtaatggta aaaaaagcta ctgcgttggc aaatggtgaa
     7621 ttgggtgcaa tcccgaaaaa aattgccaaa gctattgtgg cagcctgtga tgaagtatta
     7681 gtgaaaggac gctgtctcga tcaattccct tcagatgttt atcaaggtgg agccggcaca
     7741 tcggtgaata tgaataccaa tgaagtgatt gccaaccttg cattagaaat tttgggcgag
     7801 gcaaaaggta aatatgatat tgtcaatcca atggatcacg ttaatgcaag ccaatccacc
     7861 aatgatgcct atccaaccgg tttccgcatc gcggtttata acagtatcac taaattaatc
     7921 aataaaatca cttacctaca aactgcattt gaaaataaag ccactgagtt ttccgatgta
     7981 ctaaaaatgg gaagaacgca gttacaagat gccgtgccaa tgacgctcgg tcaggaattt
     8041 aaagcttttg ccgtattatt agatgaagag gttcgtaacc ttaaacggac ggcagaattg
     8101 cttcttgaag tgaatttagg cgcaaccgct atcggtactg gtctgaatac gccagagggt
     8161 tactctactc ttgcagttaa atatttagcc gaagtcacgc aactgccttg ctcactgtct
     8221 gaaaatctca ttgaggcaac atctgactgt ggtgcttatg taatggttca cggtgcatta
     8281 aaacgcaccg ccgtcaaact ttctaaagtg tgtaatgact tacgattact ttcatcaggc
     8341 ccacgtgccg gcttaaatga aattaatctt ccggaattac aagccggctc atctattatg
     8401 ccggcaaaag taaaccctgt tgtacctgaa gtcgtaaacc aagtgtgctt taaagtgatt
     8461 ggtaacgaca ccaccgttac ttttgcagca gaggccggtc aattacagct taacgtaatg
     8521 gagccggtta tcgggcaagc aatgtttgaa tctatcgagc tgctttccaa tgcatgtatt
     8581 aatctacgtg ataaatgtat tgacggtatt accgctaacc gtgacatctg ccaaaactat
     8641 gtgttcagct ctattggtat tgtgacctac ctcaatccat ttatcggcca ccataatggt
     8701 gatattgtcg gcaaaatttg tgcaaccacc ggcaaaagtg tacgagaagt tgtgcttgag
     8761 cgaggcttac tcaccgaaga acaactcgat gatattctct cgattgagaa cttaatgaat
     8821 ccgacttata aagccaaacg ctttaccgaa gaggaataat cattgtttac aagcggtctg
     8881 attctggcaa aaaattgcaa atttttacca aaatcagacc gcttgttatc ccattatttc
     8941 ttatttgctt tcagcatcgc cattaaattt gcaatatttg cagaagattt tgcctctttt
     9001 tcctgttcgg tcattcttgg cttttcactt tcccactcca aatcatcttg tggcaattcc
     9061 agtaaaaacc ggctcggctc aggtttgatg atttcgccat attggcgacg ttctttacac
     9121 agtgaaaacg tgagcgtttg ttgggctcgg gtaatgccga cataagccaa acgccgctct
     9181 tcttctacat tgtcctcatc aaggctggtt tggtgtggca gaatcccctc ttccataccg
     9241 attaagaaaa cgtgcggaaa ttccaaccct ttcgaggcgt gaagagtcat tagttgaact
     9301 tgatcggctt catcgtcctc ttcgccacgt tcgagcatat ctcgcaaggt taaacggttt
     9361 accacttgca ccaaattcat cggaggctct atttcatcgc cctctaacat cgcttgcacc
     9421 cattcaaaca aggtctgcac attacggctt tgcatttccg ctacttttgg gttcgccgcc
     9481 atttcataca aataggcttc atactgaatt ttcgccaaca gatcttttac tgcttcaatc
     9541 ggatcggatc tatcggcttg atcggcaatt tccacaatcc agcgggcaaa atcctgtaag
     9601 gcttggtaag gctttggcgt gaggcgttgt atgagttcaa aatcaaaaat cgcctcaaac
     9661 aaactgacct gcttttcatt agcaagtatg cctaattttt ctagcgttgc cgccccaatt
     9721 tcccgtttcg gcgtattcac aatacgcaag aaagctgcat catcgtcttg attcactacc
     9781 aaccgcagat acgccatcat atctttgatt tccgctcgag caaaaaatga cgtaccaccc
     9841 gaaattttat acggaatgcg gttttgcatt agcaattttt ccaacaagcg ggattgatgg
     9901 ttgcctcgat acaaaattgc ataatctttg tatttggtct ttttcgagaa acgatgggca
     9961 atcagctcgc ccacaatgcg ttccgcttcg tgttcctcat tttttgcctc aatgacctgt
    10021 aatttttccc cttgccccag ttctgaaaac agccgcttgc taaacaagtg atcgttatta
    10081 tcaatcagaa tattggcaca atgcagaatc cgctggctgg aacggtaatt ttgctcaagt
    10141 ttaatcactt gcaaatcaaa atcttcccgt aaccgttgca tattttcagg cttcgcccca
    10201 cgccaagagt aaattgattg gtcatcatcg cccacgaccg taaagtttgg ctcgttgccg
    10261 acaatcagct taattaactc atattggctg gtgttggtgt cttgatattc atcaactaac
    10321 aaatagcgaa ttttctgttg ccaacgagat tttgcttcgg gaaattggcg gaacagcaac
    10381 accggcaaca taatcaaatc atcaaaatcc aacgcattat aagccttaag ttgattctgg
    10441 tagagctgat aaaaatgtga aaacactcgc tcacgttcat cacgcacacg agtaagtacc
    10501 ctttcaggcg aaagcaaatc gtttttccag ttagaaatag tggcaattaa ggctttcagc
    10561 agatccttat cttccgtcac attttcaggc aataaatgtt tcagcaaagc aatttgatcc
    10621 tgctcatcaa acaaggtcat acccgattta aaaccgagca atttatattc gcgttttaaa
    10681 atttcaaacc caagtgtgtg aaaagtcgaa atggttaaac ctttgctgtt ttctttgccg
    10741 atagaatgat ccacccgttc acgcatttcc cgagcagctt tgttggtaaa ggttactgct
    10801 gcaatctgct taggcgaata gccacaatgt gcaattaaat gtgcgatttt attaataatc
    10861 acccgagtct tacccgagcc ggcaccagcc agcacaaggc aagccccttt ggtatattct
    10921 actgcttgtt gttgttgaga attgagtttc attgaatcta ttcaaaagta attttgacaa
    10981 ctattttaac ggaaagaaaa caagcggtcg aattttcagg aaaatttgca aaaaactttg
    11041 aaaatccgac cgcttgttca tcagagaaaa atccccaaaa cgcaaatttt tcctttcaat
    11101 cttgcccctt tagctatatc attataagtt gattttttag gggcaaatgc ctgattttat
    11161 aactcctttt ctttttaatt taagggaaaa aaacagtaga tggaaaaagt agaacagaaa
    11221 gctatcattg agcttaaaaa tgtaacaaaa agctacggta gtaaaacgat tcttaaaaat
    11281 ttaaatttaa ccattaacga tggtgaattt ttaacaattt taggcccttc cggttgtggt
    11341 aaaacaactg cgttacgttt aattgccggt tttgaagatt taactgaagg ttcaattatt
    11401 cttgatgggc aagatgtttc taacgttccg gcggagcaac gcccggtaaa caccgtattc
    11461 caaagctatg cccttttccc acatatgacg atttttgaaa acgtggcttt cgggctgcgt
    11521 atgcaaaaag tgccaaatgc tgaaattgag ccacgtgtga tggaagcatt acgaatggtg
    11581 cgtttagaag accgcgctca acaaaaaccg gctcagcttt ccggtggtca gcaacaacgt
    11641 attgcaattg cccgtgcggt ggtaaataaa ccgaaagtat tgttgttaga cgaatcgctt
    11701 tctgcgttag attataaatt gcgtaaagag atgcaaaatg aattaaaagc attgcaacgt
    11761 caattaggca ttacctttat ttttgtgacc cacgatcagg aagaagcctt aaccatgtct
    11821 gatcgtatta tcgtaatgaa cgctggtaaa atcgctcaag acggtacacc acgtgagatt
    11881 tacgaagagc caagtaactt atttgtagct cgtttcatcg gcgaaattaa cgtttttgat
    11941 gcaactgtaa ttgagcgtgt tgatgcaact aatgtaaaag caaacgtaga aggtcgcatt
    12001 tgcaatatca aagtggaaga tttagaggtt cagccgaacc aaaaattaaa agtattgtta
    12061 cgccctgaag atattgtgat tgaggagtta gacgaaaacg aaagctcgaa agcaattatc
    12121 ggtcatatta tcgaccgtaa ctacaaaggt atgacattag agtctagcgt gagattagat
    12181 cataacggta tgaatgtatt ggttagcgag ttcttcaatg aagacgatcc gaacattgac
    12241 cacgaagtgg gacaaaaagt tgctcttact tggtatgaag gctgggaggt tgtgttaaac
    12301 gatgaaggcg aataacaaat tccaaaatgg tgcggtcgca actattttcg gttggttatt
    12361 acttttcgta ttagtgccga acgtactcgt tttaatcatc agcttcttaa cagaaaaccg
    12421 tcaaagtcag tattttgtgg actttgcatt tagttttgat gcttataaat cactgtttaa
    12481 tgacacctat gcagcagtat tgtggaactc gctatatatg gcgggcattg ccaccttttt
    12541 ctgtttgatc atcggctatc cctttgcatt ttttattgcc aaaatgccgg aaagaattcg
    12601 tccgttttta ctgtttttag tagttctacc gttttggact aactcactga ttcgtattta
    12661 tggcattaag attttcttag gcgtaaaagg ctttttaaat gaaagcttga tggctttagg
    12721 tataatcagc gagccaatgc gtttattaaa ctcagaaatt gcgattatta ttggtttagt
    12781 ttacattcta ttacctttta tgattctacc gctttattca tcaatcgaga aaattgataa
    12841 ccgcttacta gaagctgcaa aagacttagg tgcaaacgcc ttccagcgtt ttattaaagt
    12901 gactattcca ttaacaatgc cgggcattgt cgcaggttgt ttattagtat tacttccggc
    12961 aatgggtatg ttctatgtgg cagatttatt aggcggcggt aaaacaccgt tagtaggtaa
    13021 cattattaag agcttgttct taaataccaa ccaatttgca ttaggttcag cagtaagtat
    13081 tgcattaact atcttaatgg cattaatgct ttatgtttac tatcgtgcaa acaaattatt
    13141 aaataaaaag gtggagcttg aataatgaaa aagatgttta gaaacctttt tatgttggtt
    13201 gtttttgcat atctctatat tccaattatc attttagtga tcaactcctt taatgaagac
    13261 cgctttggat taaattggaa aggctttact tggaattggt atgagcgttt attcagtaat
    13321 gatacgcttg tacaagcaac attgaactca ttaactattg cgttctttgc ggcaacattc
    13381 tcaaccattt taggggcatt aacctctatt gcgctttacc gttaccgttt ccgtggtaaa
    13441 aagctagtgg gcggaatgtt attcgtggta atgatgtcgc ctgatatcgt aatggcggta
    13501 tctatgctcg tattatttat gatcttaggt atcaagctag gctttatttc gctattaatt
    13561 gcacacatta ctttctgttt gccttatgtg gtaattgcaa tttcctcacg cctcagcgat
    13621 tttgacggca aaatgctaga agctgcaaaa gacctaggtg caagtgaagt gactattttg
    13681 cgtaaaatta ttttaccact ggcattacct tcgattattt caggctggtt gttaagcttt
    13741 acgatttcgt tagatgacgt tattgtttca tctttcgtga caagcccaag ctacgaagtt
    13801 ttaccactga aaattttctc attggttaaa acaggtgtaa cacctgaagt gaatgcacta
    13861 gcaactatta tgattatttt ctcattaaca ttagtggtat taagccagtt agtagtgaag
    13921 aaaaaagtct aaaa
//
LOCUS       DANMBQ010000061        13856 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.061, whole genome shotgun sequence.
ACCESSION   DANMBQ010000061 DANMBQ010000000
VERSION     DANMBQ010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13856
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.061"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            32..244
                     /locus_tag="PXE92_001476"
     CDS             32..244
                     /locus_tag="PXE92_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5760721.1"
                     /translation="MTNKKIQKAIELVGTQTKLAEACGVSQPTVLKWLNGGGISAEYL
                     LKIEAATNGQVTIREICEELGNATAK"
     gene            228..512
                     /locus_tag="PXE92_001477"
     CDS             228..512
                     /locus_tag="PXE92_001477"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760722.1"
                     /translation="MQQQNKSPEQAGLASGKFTVRRNQDGKWRLDLTLLDFGISSPET
                     TQARCKLLQELQLALLQGQGHLNTVGVNVRKAGPVVCVGSLLSDLLNHQE"
     gene            721..993
                     /locus_tag="PXE92_001478"
     CDS             721..993
                     /locus_tag="PXE92_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760723.1"
                     /translation="MNLDHTCTNCKSKNLRVRTSEKIGLLTIQAVTYCNNCGTEQLVQ
                     SQIIRVRTPIYKERPEAMRINKCLMEADLNTPDLFDGVVADQPKQD"
     gene            1076..1408
                     /locus_tag="PXE92_001479"
     CDS             1076..1408
                     /locus_tag="PXE92_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760724.1"
                     /translation="MSKQLYYRHKSRWNRLNRLKKMNKRRLNLFLQEKRVANLESRLA
                     DEVELAKLNSEQIGDLLQALELKVNRLIRQNEKLKARVIKLEKVKQTQKQGLFAMFKK
                     VLGSKGNP"
     gene            1421..1714
                     /locus_tag="PXE92_001480"
     CDS             1421..1714
                     /locus_tag="PXE92_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760725.1"
                     /translation="MDFVATYQKIRINTNHKQFTCNHLGEIWGKENDDFKRFLLRVAF
                     LQDNPEPKPWGAYSPQEKRLLHSFSLWLEQIADFQRVMKRESKLREKHINAPD"
     gene            1866..2108
                     /locus_tag="PXE92_001481"
     CDS             1866..2108
                     /locus_tag="PXE92_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760726.1"
                     /translation="MSLITVNDYKIKKDILDADGKPCYQLYQGEELLRDTTNLSEIIA
                     YMFIRAEDKPFDELYNHIINQEAGAKTDIKFTVTVR"
     gene            2105..2437
                     /locus_tag="PXE92_001482"
     CDS             2105..2437
                     /locus_tag="PXE92_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760727.1"
                     /translation="MSQITKSAYTHIHPNWQAPRGNTYRIERYELKRRYALFCNGERV
                     VLYKDPTHPNKNVESHIESDVLLLWLLKNELGWSGNIKEPLSPQDVENIRLLEQAFCL
                     TYNGTFIK"
     gene            2434..4800
                     /locus_tag="PXE92_001483"
     CDS             2434..4800
                     /locus_tag="PXE92_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HDL5760728.1"
                     /translation="MNYQNEILSATEAFAIGVSLPPVAGASACALELHSDRLYQAFKQ
                     PYTSMVQQELFSKDPIHEPLRQSYFERLPRALAEHFGRQYKQKLHYQSQYDTADWFKA
                     EMARKMPRIEAVISQYCDVFDFLKQSHQDLDFLAELDSNVYFGAGVDTQQAVQKIKQD
                     AEVKGIQLPMHLCRLENSSRYLKAHGIRPLAYQTEEQIKQLALGIAYRVRQIQQDNIE
                     QNMHKATDGDTAYSVLLECYRAMMGEVNKLKIDSPYQKKARKGRLTEEEITTGFLKMT
                     CEKWWTRKLSKIAEQMKEHLAIACGMVNMLSPYCSNARLKAFEAQRKANIDYLKSMII
                     ANIAEPEEQLSLFETWLKSASNPKIKRLELLTRMNGFERYADKQGHEGWFITLTAPSK
                     YHAMLSRTSSVNPKWNGASPAETQVYLVNTWAKIRAKLNREGVMAYGFRVAEPHADAT
                     PHWHLILFTRPEDMEKLRRVFLSYALEVDGTEAGAKKYRCKFKRIEKEKGSATGYLVK
                     YVSKNIDGFGMDGELSDEANIQAKENAARVGAWSSVWCIRQFQQLGNIPISLWRELRR
                     LGSVEQEDETLEKLRVIADSGEWDVFTEELGGALVKRADLVARITYTERKSETGEALY
                     TMYQEPSLKVSGIINIKNGVQINTRPKEWSIQLKPKNWEEQQLQKKLENATETERAEV
                     KRKYYEKLGFNEEAIALLGELAPPWTWTCVSNCTGSKNNQISEEARNCLRNELITMRG
                     RVTEHQIDDLLNGKRLKIWGNSQKTMFVSYSRGRLIEHIVDNYESFLN"
     gene            4813..5145
                     /locus_tag="PXE92_001484"
     CDS             4813..5145
                     /locus_tag="PXE92_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760729.1"
                     /translation="MVKFIRLNLINYFIEKDEYGEPVRCRAFRYDEIIQTKFIEGFRE
                     GEIPADDYGFEDWNGSVLILNEEGRKYFENYLFDVKKNYCRARDNYVYVLETLDEIEM
                     KLGLLEAK"
     gene            5145..5597
                     /gene="ssb"
                     /locus_tag="PXE92_001485"
     CDS             5145..5597
                     /gene="ssb"
                     /locus_tag="PXE92_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5760730.1"
                     /translation="MNLVTLVGRLGQDPDIRTMQNGEKAAALSVATSEKWTDKQTGVK
                     KESTEWHRVVLYRRLAEIAELYVKKGHLVSIIGKIKTRKWTDSNGVERSITEIIAEQM
                     QMLSSGEKNTPNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDIPF"
     gene            5608..5940
                     /locus_tag="PXE92_001486"
     CDS             5608..5940
                     /locus_tag="PXE92_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760731.1"
                     /translation="MREWEKQMPFSANLHIRPTGKFEVKNVNIEQIIGERGKNYGNFD
                     DVATMSQQLKAVLLDTNTQLKPHQKEAGEMICLKLARIFAGCNPDYEDNWRDIAGYAV
                     LGGKLNEK"
     gene            5930..6199
                     /locus_tag="PXE92_001487"
     CDS             5930..6199
                     /locus_tag="PXE92_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760732.1"
                     /translation="MKNKMGSKFIRVRVEHPQRKKEDIELVQDVVAYHIFNLFKFEES
                     GLRGFSQYDLEIDVKVKPVLEQKEMPVDVWIDDLGGKNGTITSGQ"
     gene            6174..6464
                     /locus_tag="PXE92_001488"
     CDS             6174..6464
                     /locus_tag="PXE92_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760733.1"
                     /translation="MEQLQAVSNEQVFAKLCEVERLLKTKGVNEHSRELWDLGDVAAY
                     FGYTKEHTSRSVVSSPHFPKPIALDGLRGKGRGAKKWVSGEVVKFCLMWKVK"
     gene            complement(6734..6916)
                     /locus_tag="PXE92_001489"
     CDS             complement(6734..6916)
                     /locus_tag="PXE92_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix protein, CopG family"
                     /protein_id="HDL5760734.1"
                     /translation="MAMSRNEIQAKSEAKRGIKQKSFKLPLEVIAEIEVLSQKLNIPQ
                     NQLIIQAIQQFKQNNP"
     gene            complement(7194..8192)
                     /locus_tag="PXE92_001490"
     CDS             complement(7194..8192)
                     /locus_tag="PXE92_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5760735.1"
                     /translation="MATIIKNGNKYRAQVRKKGIYKTATFSTKTEANRWAYALEAQID
                     AGEYNTTPNILFAELIDKYLKEVTPTKRGKREERYRLLRIAGSNLGNIPLPALTKEHL
                     RQWQNQRLQEVQPVSVSRERATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYS
                     DEEIDKLIFVSGYSPNQPPLLMQQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTA
                     FLPQTKNGYSRTVPLSTKAIAILNQLAQLEPNKQNSVFQLTSRSLDSNFRKLKQKANL
                     HNADLHFHDTRREALTRLSKYLTVMELAKVSGHRDLSILQNTYYNPDISELVSKLQ"
     gene            complement(8420..8496)
                     /locus_tag="PXE92_001491"
     tRNA            complement(8420..8496)
                     /locus_tag="PXE92_001491"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8460..8462),aa:Val,seq:gac)
     gene            complement(8560..9360)
                     /gene="apaH"
                     /locus_tag="PXE92_001492"
     CDS             complement(8560..9360)
                     /gene="apaH"
                     /locus_tag="PXE92_001492"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     ApaH"
                     /protein_id="HDL5760736.1"
                     /translation="MATYIVGDLHGCFNEFQLLLEKVNYNPKQDELFLTGDLVARGED
                     SLACLRFVKDSANNAKTVLGNHDLHLLGIKRVKPNDKIDAIFEAKDRLDLQNWLRNQP
                     LVIHHPKHQFLLTHAGISPEWDLATTLACAKEAEKVLQSDNYADYIAQMYENKPERWS
                     EDLQGVERWRYIINVFTRMRFCYTDKRLDFDCKLPLEQAPQELLAWFDLDNPLFTQKN
                     IIFGHWASLMGKCTRPNIYALDTGCAWGSHLTMLRWEDKQIFTQKRLK"
     gene            complement(9452..11428)
                     /locus_tag="PXE92_001493"
     CDS             complement(9452..11428)
                     /locus_tag="PXE92_001493"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HDL5760737.1"
                     /translation="MFQNNPLLAQLKQQIEASKEYVAGVVKASDKAFGFLECDKKSYF
                     IPPAEMKKVMHGDSVKAVVKRDGDKEQVEIDSLLEPMLDRFIAQVRLNKEGKLQLAVD
                     HPSIKQTIPANTHKKATEKLENGDWVVAQLKTHPLRDDRFFFAQVTQFICKESDNFAP
                     WWVTLARHEQPREPVANEKNYELHDELAREDLSHLYFTTIDSPSTQDMDDALFIEPIK
                     QNGKRTGWRLVVAIADPTAYIPENSHIEKAARQRCFTNYLPGFNIPMLPRELSDDLCS
                     LVPNEKRPALVGFIETDLNGNLIKETTFTSAWVESKDRLAYDDVSDYLEGVENAWQPQ
                     SEETKQQIEWLHQFTQARIQWRAENALLFKEQGDYTFELNEDGSVKDIHVEYRRIANQ
                     MIEESMILANICCAKFLSQHAKTGVFNTHSGFDPKNYELVKSFLLQTLASDENRDELA
                     ERYSAERLATLEGYCQMQRDIQDYPEKFLELRLRRYLTFAEFKAEVAPHFGLGITDYA
                     TWTSPIRKYGDMVNHRLIKQVLLGKQSQAVEESVLSRLQEARRQNRLVERDIADWLYA
                     RYLAPMVEQAVEFECEIADVSRGGLRAKVIKNGAQIFVPFSSLHDNKEEMEYRQEELA
                     LYIKGEKAYQIGQAVKVKLTEVRLETRSIVGNII"
     gene            11588..11866
                     /locus_tag="PXE92_001494"
     CDS             11588..11866
                     /locus_tag="PXE92_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000738492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL5760738.1"
                     /translation="MKKLLAIATVFSLAACSTQTLELSPAKEAQYDRVQHFFVSGLAQ
                     KQEIDAAKICNGADKVGKVETETTFFNGLLGTITYGIYSPRQIRVYCN"
     gene            11891..12187
                     /locus_tag="PXE92_001495"
     CDS             11891..12187
                     /locus_tag="PXE92_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL5760739.1"
                     /translation="MKKLLAMSVLTALLTTACTTQTAHIGGKVTDNIKPTKSVTQSFF
                     IGGIGQEETLNVVEVCGSKDKVQQVETVLSGGDILLGLVTIGIYTPRTANVYCK"
     gene            complement(12240..13031)
                     /locus_tag="PXE92_001496"
     CDS             complement(12240..13031)
                     /locus_tag="PXE92_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5760740.1"
                     /translation="MGILTGKRILVTGLASNRSIAYGIANAMKQQGAELAFTYLNDKL
                     KPRVEEFAKEFGSDIVLPLDVATDESITECFTELSKHWEKFDGFVHAIAFAPGDQLDG
                     DYVNAATREGYRIAHDISAYSFVAMAQAARPFLNENAALLTLSYLGAERAIPNYNVMC
                     LAKASLEAATRVMAADLGKEGIRVNAISAGPIRTLAASGIKNFKKMLSAFEKTAALRR
                     TVTIDDVGNSAAFLCSDLASGVTGEVLHVDAGFSVMAMGELGDEE"
     gene            complement(13175..>13856)
                     /gene="fnr"
                     /locus_tag="PXE92_001497"
     CDS             complement(13175..>13856)
                     /gene="fnr"
                     /locus_tag="PXE92_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fumarate/nitrate reduction transcriptional
                     regulator Fnr"
                     /protein_id="HDL5760741.1"
                     /translation="TLNETELTQLDNIIERKKPIQKSQVIFKLGDELRSLYAIRSGTL
                     KAYTLSESGEEQITGFHLPGDLIGFDAITNMQHEGYAQALETSMICEIPFDILDDLAG
                     KMPKIRHQIMRLMSNEIKSDQEMILLLSKMNAEEKLAAFLYNLSQRYSARGFSAKEFR
                     LTMTRGDIGNYLGLTIETISRLLGRFQKSGMISVQGKYIIINRMEELAELAGAIKPQQ
                     NIIAQTTA"
BASE COUNT         4157 a         2480 c         3125 g         4094 t
ORIGIN      
        1 ttataaccat tcaataacca gagttatatt tatgactaat aagaaaattc agaaagctat
       61 tgaacttgta ggaacacaaa caaaattagc tgaagcttgt ggagttagtc agcctacggt
      121 cttgaaatgg ctaaacggag gcggaatttc cgctgaatat ctactaaaaa tcgaagctgc
      181 cacaaacggg caggtaacaa ttcgtgaaat ttgtgaggag ttgggaaatg caacagcaaa
      241 ataaaagccc tgaacaggca gggctagcga gtgggaaatt tactgtaaga cgtaatcaag
      301 acggtaaatg gcgtttagat ttgaccttgt tggattttgg tattagttcg ccagaaacga
      361 ctcaagctcg ttgcaaattg cttcaagagc ttcagcttgc tcttcttcaa ggtcaaggtc
      421 atttaaatac tgtcggcgtg aacgttcgaa aagccggtcc agtcgtttgc gttggtagtc
      481 tgttaagcga ccttttaaat catcaagaat aatgtttttg gcgtttagtt gatggcgtaa
      541 gttttcaact tcaacagtca gttcaataat ttgatcttca gtattcataa aatttccttt
      601 tggagggtta aacaatatct aaaacataac caaaattcga ctgcttgtct atggggatag
      661 ataagccgaa atcaacgtaa agaatgttaa tagagccttg gggaaggcgt aggggaaata
      721 atgaatttag accacacctg tacaaattgc aaaagtaaaa atttacgggt tcgtacatct
      781 gaaaaaatcg gtttgctgac tattcaggct gttacttatt gtaataactg cggcacagag
      841 caacttgtgc aaagtcaaat tatccgtgtt cgcacaccga tttataaaga gcgaccggaa
      901 gcaatgcgta ttaataaatg cttgatggaa gccgatttga acacgccgga tttgttcgat
      961 ggcgttgtgg cagaccaacc taagcaagac taatcccaat ttttaaacaa tcgtcaaaat
     1021 aagccttatt tgcatagggc gagatttttg caccctaaat tcaggaattt gaacaatgag
     1081 taagcaatta tattaccgac acaaatcacg ttggaacaga cttaaccgcc ttaagaagat
     1141 gaataaacgt cgccttaatc tgtttttgca agaaaagcgg gtggcgaatt tagaaagccg
     1201 gttagctgat gaagtagagc tggcaaagct gaatagtgag cagattggcg atttactgca
     1261 agcgttggag ttaaaagtga atcggttaat tcgccaaaat gaaaagctga aagcccgtgt
     1321 gattaagctg gaaaaagtca aacagaccca aaagcaaggt ttgtttgcaa tgtttaaaaa
     1381 ggtgttgggt agcaagggta atccttagta agaggtagat atggatttcg tggcaacgta
     1441 tcaaaagata cgcattaaca ctaatcacaa gcaatttact tgcaatcact taggcgagat
     1501 ttgggggaag gaaaacgacg attttaaacg tttcttacta cgagtcgcat tcttgcagga
     1561 taaccccgag ccgaaacctt ggggagcgta ttccccacaa gaaaaacgcc ttttacatag
     1621 ttttagcttg tggttagagc agatagcaga ttttcagcga gtaatgaaaa gagaatcaaa
     1681 actgcgtgaa aaacatatta acgcaccgga ttagaaggag taaatatgag ccgtaaccgt
     1741 gaattgtgtg agttttttca caaactgtgg tgcaaaaccg gtaatcgcta tgcttatcgc
     1801 cggtatcaag tgttttttca gcgttatcaa aacgaatgtt tagtgaatga gtagagggta
     1861 gaaaaatgtc attaattact gtgaacgatt acaaaatcaa gaaagatatt ttagatgcag
     1921 acggcaagcc gtgttatcag ttgtatcaag gcgaagagct attgcgtgat accaccaatt
     1981 taagcgaaat catcgcttat atgtttattc gtgccgaaga taaaccgttt gatgagttgt
     2041 ataaccatat catcaaccaa gaagcaggag ctaaaacaga tattaaattt acggtaacgg
     2101 tgagatgagc cagattacta aatccgctta cacacatatt cacccaaact ggcaagcccc
     2161 gagaggtaac acttaccgga ttgagcgata tgagctaaaa cggcggtatg ccttattttg
     2221 taatggtgag agggtagttt tatataaaga cccaacacac cccaataaga acgtagagag
     2281 ccatatagaa agtgatgttt tgttgttatg gctactgaaa aatgaattag ggtggagcgg
     2341 taatattaaa gagccgttaa gccctcaaga tgttgagaat atccgcttgt tagagcaagc
     2401 attttgttta acttataacg gaactttcat taaatgaatt atcagaatga gattctatct
     2461 gctacagagg ctttcgcaat aggtgtttca ctcccacctg ttgccggtgc ttctgcttgt
     2521 gcattagagc ttcattctga tcgtttatat caagcgttca aacagcctta cacttcaatg
     2581 gtccagcaag aattattctc gaaagaccct attcacgaac cgttacgcca atcttatttt
     2641 gagcgtttgc ctcgtgcctt agcagagcat ttcggcagac agtataagca aaagctacat
     2701 taccaaagcc aatacgacac agcagactgg ttcaaagcgg aaatggcacg caaaatgcca
     2761 cgcattgagg cagttattag ccagtattgc gatgtattcg attttctgaa gcaatcccat
     2821 caagatttag attttttagc tgaattagat agtaatgttt atttcggtgc cggtgttgat
     2881 acgcaacaag cggtacaaaa aattaaacaa gatgccgaag tgaaaggtat tcaactgcct
     2941 atgcaccttt gccgtttaga gaatagctct cgctatttaa aagctcacgg cattcgcccg
     3001 cttgcttacc aaaccgaaga gcaaatcaaa cagcttgcct taggtattgc ttatcgtgtt
     3061 cgccaaattc agcaagataa catcgagcag aatatgcaca aagcgacaga tggcgacaca
     3121 gcctatagtg tgttgcttga atgctatcgg gcaatgatgg gagaggtaaa taagctcaag
     3181 attgattcgc cttatcagaa aaaagcgaga aagggtagat taactgaaga ggaaattacc
     3241 acaggctttt taaaaatgac ctgtgaaaaa tggtggacta gaaagttatc taaaattgcc
     3301 gaacagatga aagagcattt agctattgcg tgcggtatgg tgaatatgct ttcgccttac
     3361 tgttcaaatg ctcgcttgaa agcgtttgag gctcaacgca aggcgaatat tgattatttg
     3421 aaatcaatga tcattgccaa tatcgccgag ccggaagagc aactttcatt atttgaaacg
     3481 tggttgaagt ctgcctctaa cccgaaaatt aaacgccttg aattactcac tcgtatgaat
     3541 ggatttgagc gttatgcaga taagcaaggg cacgaggggt ggtttattac cttgactgct
     3601 ccgtctaagt atcacgcaat gctttcaaga accagtagcg tgaacccgaa atggaatgga
     3661 gcaagccctg cggaaacaca ggtttacctt gtgaatactt gggcgaaaat ccgtgccaaa
     3721 ctcaaccgtg agggcgtaat ggcttacggt tttcgagtgg ctgaacctca cgctgacgct
     3781 accccacact ggcatttaat tctattcact cgtccggaag atatggaaaa gcttcgccgc
     3841 gtgttcttga gttatgcctt agaggtcgat ggcacagaag ccggtgcgaa aaaataccgt
     3901 tgcaaattca agcgtattga gaaagagaaa ggctcggcaa cgggctattt agtgaaatat
     3961 gtttctaaaa acattgacgg ttttggaatg gacggcgagc tttcagacga ggcaaatatt
     4021 caggcgaaag agaatgccgc tcgtgtagga gcgtggtcta gcgtttggtg tattcgacag
     4081 ttccagcagt taggtaatat tccgatcagc ttatggcgtg agttacgccg tttggggagt
     4141 gtagagcaag aagatgaaac tttagagaaa ctccgtgtga ttgcagatag cggtgagtgg
     4201 gacgttttca ccgaagaatt aggcggtgcg ttggttaaac gtgccgattt agttgcacgt
     4261 attacttata ccgaacgcaa aagcgaaacc ggtgaggcgt tatatacgat gtatcaagag
     4321 ccatcattaa aagtgagcgg cattattaac attaaaaacg gtgtgcagat taatacacgc
     4381 ccgaaagagt ggagcattca acttaaacct aaaaactggg aggagcaaca attacagaaa
     4441 aaattagaaa atgcaaccga aacggaacga gcggaggtta aacgtaaata ctacgagaag
     4501 ttagggttta acgaagaggc tatcgcttta ttaggggagc ttgctccccc ttggacttgg
     4561 acttgtgtca gtaactgtac ggggtcaaaa aataatcaga ttagtgaaga ggctcgaaat
     4621 tgcctaagaa atgaactgat tacaatgcga ggacgggtta ctgaacatca aatagacgat
     4681 ttactaaacg gcaagcggtt aaaaatttgg ggaaattcgc aaaaaacaat gtttgtgagt
     4741 tatagccgtg ggcgtttaat tgagcatatt gttgataatt atgagagttt tttgaattag
     4801 gatattaaga aaatggttaa atttattcgt ttaaatttga ttaattattt cattgagaaa
     4861 gatgaatatg gagaaccggt gcgttgcaga gcgtttcgtt atgatgagat tattcaaact
     4921 aagtttattg aaggatttcg agagggagag ataccagctg atgattatgg atttgaagat
     4981 tggaatggtt cggttctgat tttaaatgaa gaaggacgta aatattttga gaactatctt
     5041 tttgatgtaa agaagaatta ttgtagagca agggataact atgtatatgt cttggaaact
     5101 ttagacgaaa ttgaaatgaa gttaggatta ttggaggcga aataatgaac ttagtcacat
     5161 tagtcggacg tttggggcaa gaccctgata ttagaacaat gcaaaatggt gagaaagctg
     5221 cggctttatc ggtagcgacc tctgaaaagt ggacagataa gcaaacaggt gtgaagaaag
     5281 aaagcaccga atggcatagg gtggtgcttt atcgccgatt agctgaaatc gccgaattgt
     5341 atgtaaaaaa agggcatttg gtatcaatta tcgggaaaat taaaacccga aaatggacgg
     5401 atagcaacgg tgttgagcgg agtattacag agattattgc cgagcagatg caaatgctca
     5461 gtagtggtga gaaaaatacg ccaaatacgc caaataaggc agaaaataaa ccgcaaccaa
     5521 agcagaaaaa tcaagacgtg atgactgcgg acgagcagaa agatattccg cagtttgatg
     5581 atgatattcc gttttagggg gtgaataatg agagaatggg aaaaacaaat gccatttagt
     5641 gcaaatttac atataagacc tacaggaaaa tttgaagtga aaaatgtaaa catagaacaa
     5701 ataatcggag aacgtggcaa aaattacggc aactttgatg atgttgccac aatgagccag
     5761 cagttaaaag cagtgttgct ggataccaat actcaactta aaccacatca aaaagaggca
     5821 ggcgagatga tctgcttgaa actggctcgc atttttgcag gttgtaatcc ggactatgaa
     5881 gataactggc gagatattgc gggttatgcg gtgctgggag ggaaattaaa tgaaaaataa
     5941 aatggggagt aaatttatac gagtcagagt tgagcatcca cagcggaaaa aagaagatat
     6001 tgagcttgtg caggatgtgg ttgcttatca tatttttaat ctttttaaat ttgaggaaag
     6061 tgggttacgg gggtttagtc agtatgattt ggaaattgat gtgaaagtta agccagtgtt
     6121 agaacaaaaa gaaatgcctg tagatgtttg gattgatgat ttaggtggta aaaatggaac
     6181 aattacaagc ggtcagtaat gagcaagttt ttgcaaaact ttgtgaggtt gagcggttat
     6241 taaaaaccaa aggggtgaat gagcatagcc gtgaattgtg ggatttgggc gatgtagcag
     6301 catatttcgg ctacactaaa gaacacacca gccgaagtgt tgtatctagt ccacattttc
     6361 cgaaaccgat tgcccttgac ggcttacgag gcaagggcag gggggcgaag aagtgggtat
     6421 ccggtgaagt ggtgaaattt tgtttgatgt ggaaggtgaa gtgatgataa aaaagataat
     6481 tttagatgct tgttgcggta gccgaatgtt tcactttaat aagcacaacc cctcggtatt
     6541 gtttgctgac aatcgggaat ccctgtatcg aaaattttaa atgttatcga ataccaacct
     6601 atctatgggc ataaaagcgg taaacataac aaaacgcatt ggctggcatt tgtaaagatg
     6661 gataataacg attatttgta aagtatttca aaatacaaaa gccgataaat ttcattattt
     6721 atcggctttt gttttatggg ttgttttgct tgaattgttg aatagcttga ataatcagct
     6781 ggttttgtgg aatgttgagt ttttggctaa gtacttcgat ttctgcgatc acctcaagcg
     6841 gtagtttaaa ggatttttgc tttattcctc gttttgcctc gcttttagct tggatttcat
     6901 ttcttgacat tgccataatt tatccctatt ataaattttg ttgaagagct gggagctttc
     6961 acccccagcg agttgcttca gattagtaag ctggggagct aaggactaat aagaagacaa
     7021 ctaggataat gtatttaaac attgtgctat ccttcttcat ttcgtaaggt ttaagcctta
     7081 cgctcacttt caagctgtct cttgaaagtg aggttattat aatgtagggt atcctacatt
     7141 gcaagtaata aatacaaaaa agccgataaa ttttcgttta tcggcttttg tttttattgc
     7201 agtttgctca caagttctga aatatccggg ttatagtagg tattttgcaa aatacttaaa
     7261 tctcgatgcc ccgatacttt ggcaagctcc attaccgtca gatatttaga caaacgtgtg
     7321 agtgcctctc gccgtgtgtc gtgaaaatgc agatcggcat tgtgtagatt ggctttttgt
     7381 ttcagcttgc gaaaattcga atcaaggctg cgactggtga gctggaaaac actgttttgc
     7441 ttgttcggtt caagttgtgc caactgattt aaaattgcta ttgctttggt tgagagtggc
     7501 acggtgcgtg aataaccgtt tttggtttgt ggcaaaaatg cggtgcgtgc ctgcaggttt
     7561 atatgttccc attttaaacc agcaatttca cccgctcgca ttgcagtctc aatcgcaaat
     7621 aatagtgctg ctccggctct ttgttgcatt aatagcggtg gctggttagg gctgtagccg
     7681 gagacaaaaa tcagtttgtc tatctcctca tcgctatatc ggcgagttct tgctggtggc
     7741 gttttgattt tttccagcgt ttttagagga ttttctttga gataatccca ttccattgct
     7801 tttgtaaaga gtgccgataa agtggctctt tctcttgaga cggaaaccgg ctgcacttct
     7861 tgcaagcgtt ggttttgcca ttggcgtaaa tgctctttgg tgagtgccgg taatggtata
     7921 tttcccaagt tgctgccggc aattcttagc aggcgatagc gttcttccct tttgccacgt
     7981 ttggtcggag tgacctcttt gaggtatttg tcgattaatt cggcaaaaag aatgttcggg
     8041 gtggtgttat attctccggc atcaatttga gcctctaaag cgtaagccca gcggtttgcc
     8101 tctgttttgg tgctgaaagt ggcagtttta taaatgcctt ttttgcggac ttgtgctcgg
     8161 tatttgttgc cgttcttaat aatagtagcc atttttttat tcctttgtgt atgtgtgcag
     8221 tttaagtgtg caaatgtgtg caaaggaatg ttaatagaga tcataaacga tcaataaata
     8281 tcaagttttc atatcaaaaa tgatgttttt attgatgtta tgctacactt ggggaagtgt
     8341 tttaaatcaa taagctattg atttataagg ggtatttttg gggttaagcc tgaatgggga
     8401 tattcaggct taaaaataat ggtgcgacta gctggactcg aaccagtgac ccccaccatg
     8461 tcaaggtggt gctctaacca actgagctat agtcgcatta acggtgtgca ttctattgga
     8521 aaaaggaact tagtgcaata tgcttttggt cgaatgcttt tattttagac gcttttgggt
     8581 aaaaatttgt ttatcttccc aacggagcat ggttaaatgg cttccccaag cacagccggt
     8641 atcaagtgca tagatgtttg gacgagtgca tttgcccatt aggcttgccc agtgaccaaa
     8701 gataatgttt ttctgtgtaa ataacggatt atctaagtca aaccaagcca gcagttcttg
     8761 aggggcttgt tcaagcggta atttacagtc aaaatctaac cgcttgtcgg tgtagcaaaa
     8821 ccgcatacgg gtaaacacat tgatgatata acgccaacgt tcaacacctt gcaaatcttc
     8881 actccagcgt tcgggcttat tctcatacat ttgggcgatg tagtccgcat aattgtcact
     8941 ttgtagcacc ttttctgcct ctttggcaca agctagggta gttgctaaat cccactcagg
     9001 gctgattcct gcgtgagtca gcaaaaattg atgtttgggg tgatgaatta caagcggttg
     9061 atttctgagc caattttgca aatcgagccg atctttagcc tcaaaaatag catcaatctt
     9121 atcatttggt tttacccgtt tgatgccaag caagtgcaaa tcgtggttgc ctagcacggt
     9181 tttggcattg tttgcagagt ctttcacaaa acgtaaacag gctaaagagt cctcaccacg
     9241 ggcgactaaa tcccctgtta aaaagagttc gtcttgcttg gggttataat tgactttttc
     9301 taataaaagc tgaaattcgt taaagcaacc gtgtaggtcg cctacaatat aagttgccat
     9361 tgtttctcct ttgttcccct aaagttataa acaagcggtt atattttaga gaaaatttgc
     9421 aaaatctcat caaaatataa ccgcttgaaa tttaaatgat atttcctacg attgagcggg
     9481 tttctaagcg tacttcggtg agtttcactt tcaccgcttg cccgatctga taggcttttt
     9541 cacctttaat ataaagtgca agttcttctt ggcggtattc catttcctct ttgttgtcgt
     9601 gcaagctgga gaatggcaca aaaatttgag caccgttttt tatgactttc gcacgcaagc
     9661 caccacggga aacatctgca atttcgcact caaattcgac cgcttgttcc accattgggg
     9721 caaggtaacg agcataaagc cagtcagcaa tatcacgttc tactaaacgg ttttgacggc
     9781 gagcttcttg taaacggctt aaaactgatt cttccaccgc ttggctttgt ttgccaagta
     9841 acacttgctt gattaaacgg tggtttacca tatcgccata tttacggatg ggtgatgtcc
     9901 aagtggcgta atcggtaatg cctagtccga aatgcggggc aacttcggct ttaaattcag
     9961 cgaaggttaa ataacgtcgt aaacgcaact ctaagaattt ctctgggtag tcttgaatat
    10021 cacgttgcat ttggcaatag ccttctaagg ttgctaaacg ctcggcggag tagcgttcgg
    10081 caagctcatc acgattttca tcgctggcta aagtttggag taaaaatgat tttaccaatt
    10141 cataattttt cggatcaaaa cctgaatggg tattaaatac accggttttg gcatgttggc
    10201 ttaagaattt tgcacaacaa atattggcaa gaatcattga ttcttcgatc atttgattcg
    10261 caatacggcg atattcaacg tgaatatctt ttaccgagcc atcttcattt aactcaaagg
    10321 tataatcgcc ttgttctttg aatagcaacg cattctcggc acgccattga atgcgggctt
    10381 gagtaaattg atgtagccac tcaatttgtt gttttgtttc ttcagactga ggttgccacg
    10441 cattttccac gccttcgaga taatcggaaa catcgtcgta agccaagcga tcttttgatt
    10501 cgacccaagc agaggtaaag gttgtctctt taatgagatt gccgtttaaa tcggtttcaa
    10561 taaagccaac gagggcaggg cgtttttcat tcgggacaag cgaacagaga tcgtctgaga
    10621 gttctcgagg taacattgga atgttaaagc ccggcaaata gttggtgaaa caacgctggc
    10681 gagcggcttt ttcaatatgg gaattttctg ggatataagc ggttgggtca gcaatcgcta
    10741 ccactaaacg ccagccggtt cgcttgccat tttgcttaat tggttcgatg aacagagcat
    10801 cgtccatatc ttgcgtgctt gggctgtcaa tagtggtaaa gtaaagatga gataaatctt
    10861 cacgagctaa ttcatcgtgt aattcatagt ttttttcatt tgcgaccggt tcacgaggct
    10921 gttcgtggcg ggcaagtgtg acccaccaag gggcaaaatt atcagattct ttacagataa
    10981 attgggtaac ttgagcaaag aaaaaacggt cgtcacgcaa tgggtgcgtt tttaattgtg
    11041 caaccaccca gtcgccattt tctaattttt cagtggcttt tttatgggta tttgccggga
    11101 tagtttgctt aatgcttggg tgatcaaccg caagttgcaa tttgccctct ttattcaagc
    11161 gaacttgggc aataaatcta tccagcattg gctcaagtag tgaatcaatt tctacctgtt
    11221 ctttgtcgcc atcacgtttg actacggctt tcactgaatc accgtgcatt acttttttca
    11281 tttccgcagg tggaataaaa tagctttttt tatcgcattc taaaaaaccg aatgctttgt
    11341 ctgaggcttt gacaacgcct gcgacatatt ctttgcttgc ttcaatttgt tgtttgagtt
    11401 gggctaaaag gggattgttt tgaaacataa tttctcattt taaaaataaa aaaaggtgct
    11461 atcgttgcac cgaaaaaaac aatggcatta taacggattt gaaccaagtt cagcaaataa
    11521 atgctgttgc tataacttat aaaggttggt agaatataat ccatttaaaa ataatggaga
    11581 cttttcaatg aaaaaattac ttgcaattgc aacagtattt tctttagcag cctgttctac
    11641 tcaaacactt gaactatctc ctgctaagga agctcaatat gatcgtgttc aacacttctt
    11701 tgtttcaggg cttgctcaaa aacaagagat agatgcagca aaaatttgta atggtgcaga
    11761 taaggtaggt aaggtagaaa ctgaaactac tttctttaat ggcttgttag gtacaattac
    11821 ttatggtatc tattcacctc gccaaatccg tgtatattgt aactaatcct agtaatttaa
    11881 ggagttgaaa atgaaaaaat tgcttgctat gtctgtatta acagccctgc tgactacagc
    11941 atgtacaaca caaactgccc atattggcgg caaagttact gataatatta aaccaactaa
    12001 gagtgtaact cagtcgttct ttataggtgg gattgggcaa gaagaaacat tgaatgttgt
    12061 agaggtttgt ggttccaaag ataaagtgca gcaggttgaa acagtacttt caggtgggga
    12121 cattctatta ggtcttgtga ctatcggtat ttatacacct cgtactgcaa atgtatattg
    12181 taagtaatat tttattaaaa aaataacgga ctcaattgag tccgttattt ttataggaat
    12241 tactcttcgt cgcctaattc acccattgcc attacgctga agccggcatc aacgtgtaac
    12301 acttcacctg ttacaccaga ggctaaatct gagcataaga aagctgcaga gttacctaca
    12361 tcatcaatag ttacggtgcg gcgtaaagca gcggttttct cgaaagcaga aagcattttc
    12421 ttgaagtttt taatgcctga agcagctaat gtacggatcg ggccggctga aatcgcattt
    12481 acacgaatac cttctttacc taaatcggct gccattacac gggttgcagc ttctaaagag
    12541 gctttggcta agcacattac attgtagttg gggattgcac gctctgcacc taagtaactt
    12601 aaggttaaaa gggcggcatt ttcatttaag aaggggcgag cagcttgagc cattgcaaca
    12661 aagctatagg cactgatgtc gtgtgcaata cgataacctt cacgggttgc ggcatttaca
    12721 taatcgccgt ctaattgatc gcccggtgca aatgcgatag cgtgaacaaa accgtcaaat
    12781 ttttcccaat gtttgcttaa ttcagtaaag cactcagtaa tgctttcatc ggttgctaca
    12841 tctaacggaa ggacaatgtc tgagccaaat tctttggcaa attcttcaac tcgtggtttt
    12901 aatttatcgt ttaagtaggt gaatgcaagt tctgcacctt gttgcttcat tgcgtttgca
    12961 ataccgtaag cgatcgaacg gttgcttgct aaacctgtca ctaaaatacg tttaccagtt
    13021 aagataccca taaaaattcc tcttttatat tgattggggc aaaattgtgt cgattataac
    13081 ggatatagga aaaacgggca aatggagtta gcggctcatc ggatcagaaa tccctttttg
    13141 aacgaggttt caaaaaggga tttggtaaga taaattaagc ggtagtttga gcaataatat
    13201 tttgctgcgg tttgattgcc ccggctaatt cggctaattc ttccatacgg ttaataataa
    13261 tatattttcc ttgtactgaa atcataccgc ttttttggaa acgccctaat aaacggctga
    13321 tagtttcaat ggttaaacca agataattgc cgatatctcc acgggtcata gttagacgga
    13381 actcttttgc agagaaacca cgggctgagt aacgttggga aagattatac aaaaatgcag
    13441 ctagtttttc ttccgcattc atttttgaga gcaatagaat catttcttga tcgcttttaa
    13501 tttcattact catcaaacgc ataatttgat ggcgaatttt tggcattttg ccggcaagat
    13561 catctaaaat atcgaatgga atctcacaaa tcattgaggt ttcgagtgct tgagcatagc
    13621 cttcgtgctg catattggta attgcatcaa agccaattag atcgccaggt aaatggaaac
    13681 cggtaatttg ctcttcacca ctttcactta aggtataggc ttttaatgtt ccagaacgga
    13741 tagcataaag cgaacgcagt tcatcaccta acttaaaaat aacttgcgat ttttgaatcg
    13801 gttttttacg ctcaataata ttatctagtt gagttaattc cgtttcatta agagta
//
LOCUS       DANMBQ010000062        13646 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.062, whole genome shotgun sequence.
ACCESSION   DANMBQ010000062 DANMBQ010000000
VERSION     DANMBQ010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13646
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.062"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..895)
                     /locus_tag="PXE92_001498"
     CDS             complement(<1..895)
                     /locus_tag="PXE92_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5760742.1"
                     /translation="MSKIEFEKIPNSIRKPSVLTEYNNKDAVTTLPTNEQEVLIVAPM
                     LNGEAAFTAPQKIFSDVEAENLFGKGSVAHLMVRQAIQNNPLIRLTVVGLKDHEAGIA
                     ATGQVSFTGTVTYAGVVRITIAGTAYEVAAAKGEEAQAIVARLVNVINAASYSPVVAS
                     VESETTLKLTSKAKGEISNEITLATRNTATGLTLEARAFDNGQRNALIAPALASVAGT
                     HYNVIISPFSDDENALALRSHLESVSAPIEDKPAIGVMGWRGTYATGTTLTASLNSER
                     IIVGWYKGATESNAMIAAGLGA"
     gene            complement(895..1074)
                     /locus_tag="PXE92_001499"
     CDS             complement(895..1074)
                     /locus_tag="PXE92_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2635 domain-containing protein"
                     /protein_id="HDL5760743.1"
                     /translation="MLKVKAAKGVRVPVENRPHHYIEQEAVEVENTLYYQRRIADGDL
                     IVVKETKSAKETGGK"
     gene            complement(1075..1716)
                     /locus_tag="PXE92_001500"
     CDS             complement(1075..1716)
                     /locus_tag="PXE92_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1834 family protein"
                     /protein_id="HDL5760744.1"
                     /translation="MISKIERALIERLTLGLGKMVYAVAGYAGEINDEKLDVLRLPAC
                     LVSYGGSAFEAKSMGVRGKRYQATDVFVVLVITRSMRNQTAGRLGGVTSREVGVNQLL
                     GAVKTLLINQTLDGLVHPIQPKRIRTIWNNAEVKKEKLSAYAIEFEISYNECNVLDDG
                     RFPEGVEPNEQVFKQYQGKLDEPQGDLSGFNNRIFDPNNNAETAFRTEFKDGD"
     gene            complement(1713..2138)
                     /locus_tag="PXE92_001501"
     CDS             complement(1713..2138)
                     /locus_tag="PXE92_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL5760745.1"
                     /translation="MYALVDDFVLRIGEQESIELTDREMVGVVDEATLEVALADSSSQ
                     IDGYLSGRYRLPLKTVPQNLKRICCDLARYHLTSKSLVTMTEEVENRYKLCLKELENI
                     SKGVVSLAVDETNEEESATGENTVQFFNGGNRIWGRDKR"
     gene            complement(2138..2479)
                     /locus_tag="PXE92_001502"
     CDS             complement(2138..2479)
                     /locus_tag="PXE92_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760746.1"
                     /translation="MAKPKKNDNEALNTNENTPLEDKVNEQPEDKTDEQPKPPESETK
                     PDDGALINPIAFEVKLKSIHPQATYGRCGYRFNKETAVEIARKALSDEQIITLANDPY
                     LEFVPVVEGDA"
     gene            complement(2527..3444)
                     /locus_tag="PXE92_001503"
     CDS             complement(2527..3444)
                     /locus_tag="PXE92_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu-like prophage major head subunit gpT family
                     protein"
                     /protein_id="HDL5760747.1"
                     /translation="MFKKSELLKALDTAFRKEFSAGLKVLEPQWGTVAMKVSSSTATN
                     TYAWLGQFPKMQEWVGDRQIKNMQAQGMTIENKLFESTVAVPRTAIEDDQVGLFTPMV
                     KQAAQSAAELPDDLVFSLLKKGKTTLCYDGQNFFDTDHPVYQNVDGTGTSKTQSNITT
                     GSASGKPAFYVLDDSQAIKPLIWQERTTPEIETKFDPSESDHVFMKDQYLWGVRARGN
                     AGFGFWQLIHRVEDSELNSETLEKVLTAMRTLKGDGDKQLNIRPTTLLVPPSLEFAAR
                     KLLEAELIDGTTNTLKGVLKVVVNPFIAE"
     gene            complement(3444..4514)
                     /locus_tag="PXE92_001504"
     CDS             complement(3444..4514)
                     /locus_tag="PXE92_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protease"
                     /protein_id="HDL5760748.1"
                     /translation="MFKHKFKLNPIALSFKLNQEANGRIQLFPFGWFEAQDGRGGRWY
                     VGDENGYALADDINNTAIDLMIDYEHQTLYIAENGKGNPAAGWITKAEYISGEGLFAD
                     VKWTPQATQEIKDGVYRYLSPLFLTDGSGMVIKVLNAALTNRPALHNLQEVVAMSSQF
                     AKFLTPEEENPKMKELLIKLFALSANATDEQITEKLTALEKAKGDSPVALSDVYTELA
                     KEKSQVVALSAKVNHPDPAKFVALSDLQAVQTELNGLKQQINDKERDALIQTALSDGR
                     LLPAQKAWAEKLGKQDLVALSDFLKTVTPNPALASTQSGGEDPNKGTEKVALSAAEIA
                     AAKSLGLSEAAYIEKYKTEESK"
     gene            complement(4773..5189)
                     /locus_tag="PXE92_001505"
     CDS             complement(4773..5189)
                     /locus_tag="PXE92_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL5760749.1"
                     /translation="MIEIQIHGIDEIIATLNRIAAKTANKTDLMRNIAGKMESAVLTN
                     FDEGGRPKWLGIKHRQGTPLVDTENLMGSITADYNNDSAIVGTNEPYAAIHQFGGMAG
                     RGRKVKIEARPFLQLTSQDRQDILDDVQAYWQKLLD"
     gene            complement(5340..6639)
                     /locus_tag="PXE92_001506"
                     /pseudo
     CDS             complement(5340..6639)
                     /locus_tag="PXE92_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248654.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
     gene            complement(6626..8251)
                     /locus_tag="PXE92_001507"
     CDS             complement(6626..8251)
                     /locus_tag="PXE92_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 domain-containing protein"
                     /protein_id="HDL5760750.1"
                     /translation="MSKKKHNKQIKPNLNPIKNQELQTDLAEITATGRVLSDHPSNFI
                     TPAKMKAIFEDTENGDITAQHELFMDIEERDSSIFANIQTRKRAALGVDWAIVAPRNA
                     TPQEEKLRDEVDELFYQLGNLEDLVMDCMDAVGHGFAALEIEWAFNGKLWYPNAFIHR
                     PQSWFKWDKHDNLLLKTRQNTEGEPLREFGWVVHTHKSRSTQAARNNLFRSLAWLYMF
                     KHYSIHDFAEFLELYGMPIRIGKYGAGATPNEKQTLKRALAEIGHNAAGIMPESMSIE
                     LHNAANAGGAAGNNPFLQMVDWCEKSIARLILGQTLTSGADGKSSTNALGNVHNEVRR
                     DLLVSDVKQLGQTFTQQIILPFLQINFGNIDPTRIPSFEFDTKEPADLALFAESLPKL
                     VDIGMPIPVQWAMDKLGIPEAQENEAVLGRSAPPQAVGLSANFPQKMTACECGCGGKV
                     HALSAQTKTGIKEQDALDDLADEAFSVPDFNAQFDPITKKAVAVVMACSSYDEAAEKL
                     AAAYPDLVSEEHDRYLANALFLADLLGAANAES"
     gene            complement(8320..9945)
                     /gene="terL"
                     /locus_tag="PXE92_001508"
     CDS             complement(8320..9945)
                     /gene="terL"
                     /locus_tag="PXE92_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HDL5760751.1"
                     /translation="MKIKEFEKELEELRRQLQQNIEASFEGWDDKPQAISERRQKVLD
                     PVHGFEYFVQAYFPHYVRSEHKSQLHHYLFENLPLSVSDLSKSVRQAIAAPRGEAKST
                     ICTQLFPLWCLVRDLKRYIIIAMDTKEQAYSMLEAIKVEIESNPRLRIDFPEVAQGKV
                     WRAGVIMTAKKQKVEAVGAGQKLRGRRHGAYRPDLVVLDDIENDESVETPAQRNKLHN
                     WVLKAVLKLGAAGEKFDVIYVGTILHYDSVLSRILNTKGWRRVRFKAILRFPGNMALW
                     DEWENIYLSEEGDDDTMSDLFYQQHKAEMDKGALVSWLARPILYLMKIRASDGHSAFD
                     SEYQNDPVSGDDAIFANSIQYWTELPDDLIYFGALDPSMGKAGASRDPSAILVGGYHR
                     ESGKLYVVEAQIKKRLPDLIIEDVIRLHSQYNCHRWFVETVQFQEFLQTELVKRSAQR
                     GKPVPATATKPNSDKMLRIESLQPHIANGLILLHRSQSTLESQLRHFPKADHDDGPDA
                     LEMLWRNALSSSAPIEWESVDDFDGEYRSKWRH"
     gene            complement(9949..10095)
                     /locus_tag="PXE92_001509"
     CDS             complement(9949..10095)
                     /locus_tag="PXE92_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760752.1"
                     /translation="MAKKKQTVVHKHYSFRWIVQLACIFGAIKLMLNGTDGWGWLLLI
                     AACM"
     gene            complement(10095..10595)
                     /locus_tag="PXE92_001510"
     CDS             complement(10095..10595)
                     /locus_tag="PXE92_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HDL5760753.1"
                     /translation="MAHDVEVQKAVRQAYVFDRLSLEMAAERAGVSFGTARRWKAAAE
                     KNGDNWEKARDVQAMASGGIENIAQGLLAGFLIKYRTLMTELEENTEMPTAAKVEALA
                     ALADSFAKMTASSKKLLPETSAMATAMRAIEMMANIVKTKKPHLLPDFLEMLDELEVQ
                     FKKEFK"
     gene            complement(10603..10857)
                     /locus_tag="PXE92_001511"
     CDS             complement(10603..10857)
                     /locus_tag="PXE92_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760754.1"
                     /translation="MSRKKQKQTDSEKLDLILGGLNELNDKVDKQNEEIERLHREIQA
                     TNRLVNEMARKNRRDAVVAGGLGGGIVAVGFELLRLKFGM"
     gene            complement(10857..11114)
                     /locus_tag="PXE92_001512"
     CDS             complement(10857..11114)
                     /locus_tag="PXE92_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760755.1"
                     /translation="MIDEKLFQMLISFVVAPLVAFVGKVIFDRINRNEQTVKELKAEM
                     ESKYQSKELAHEVNRGIKEKLDDILDSLKEVNQKLDKKADK"
     gene            complement(11107..11262)
                     /locus_tag="PXE92_001513"
     CDS             complement(11107..11262)
                     /locus_tag="PXE92_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760756.1"
                     /translation="MKLIKKLRQRWQQWRFYRRRPDLAELHNVVRAAVAQGNQHPVGR
                     AKRGRYD"
     gene            complement(11277..11636)
                     /locus_tag="PXE92_001514"
     CDS             complement(11277..11636)
                     /locus_tag="PXE92_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL5760757.1"
                     /translation="MITQQIAGVVGVVSTILAYAFYKSWQLKQERKLTATLKAEKQQQ
                     AVEIQQKNAEVKNAKIQQKHVSETRRIQPSAIDEQLHQHGYFRDDNGLHGVRSDLPEP
                     CGHNGNETPSACTQSDL"
     gene            complement(11633..11878)
                     /locus_tag="PXE92_001515"
     CDS             complement(11633..11878)
                     /locus_tag="PXE92_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL5760758.1"
                     /translation="MKQFLLDLITNKDGTASTTGFIQFMSWLVLSGILIHAYLYDKPF
                     ISDWWFAYAGICVLGSPATKGVVSALKQKERSREAEE"
     gene            complement(11881..12414)
                     /locus_tag="PXE92_001516"
     CDS             complement(11881..12414)
                     /locus_tag="PXE92_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL5760759.1"
                     /translation="MTEPIKNKATIADFNLAFDRLIGHEGGYVNDPKDPGGETNWGIT
                     IHTARANGYTGSMRAMSRADAKTIYLKAFWQRYNCEQFPPELAFQFLDACVNHGSGNA
                     SRMLQRAVGVADDGIIGKVTLAAIERYSVADVGLLFQAERLEFYTKLKHFDRFGRGWI
                     NRMAGNLRYFAKDTVEE"
     gene            complement(12500..12925)
                     /locus_tag="PXE92_001517"
     CDS             complement(12500..12925)
                     /locus_tag="PXE92_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mor transcription activator family protein"
                     /protein_id="HDL5760760.1"
                     /translation="MSEFESVEHYLPETVKEIVGVIGLPATEKLIKAFGGFSFQFSNG
                     KLYFNKLKEVLGQDDAVKLQAYMGACEVYLPRCETALRMLRNQQIYADYCQLTEQGGL
                     SGRLAIMQICPKYSVCDRVAWEAVRYYQRKHTVSQATLF"
     gene            complement(12996..13211)
                     /locus_tag="PXE92_001518"
     CDS             complement(12996..13211)
                     /locus_tag="PXE92_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5760761.1"
                     /translation="MIENPEFGYTPSNLKMLRKHHNLTQTEVANILGVGQRIVMRWET
                     ELSSTAARSDMPYTKWAELLKNLQKNF"
     gene            complement(13230..13622)
                     /locus_tag="PXE92_001519"
     CDS             complement(13230..13622)
                     /locus_tag="PXE92_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760762.1"
                     /translation="MTDYQKLLNALLNDADEDCFAVYGLRATTDVHQVGDELGNSFVW
                     VDGEKTDEELDGICTMGIQNADEAGLLNAIKNLGRDACKKFDVEFKGFQSYCGQNFIL
                     VKGDSARGGEDKGESIIRNPIVVAVFNS"
BASE COUNT         3596 a         3435 c         2613 g         4002 t
ORIGIN      
        1 ccgcaccaag ccctgccgca atcattgcat ttgattcggt tgctccctta taccagccta
       61 caataattcg ctcactgtta aggcttgcgg ttaaggttgt gccggtggca taagtgccac
      121 gccagcccat tacaccaata gccggtttat cttcaatcgg ggcagaaacc gattctaaat
      181 ggctacgcaa ggcaagggca ttttcatcat ctgaaaacgg cgaaataatc acgttataat
      241 gcgtaccggc aacactcgcc aacgccggag caattagggc attacgctga ccgttatcaa
      301 acgcacgagc ctcaagggtt aaacctgttg ctgtattgcg tgttgcaagc gtgatttcat
      361 tgctgatttc gccttttgct tttgaggtca gtttaagtgt cgtttcactt tccacacttg
      421 ccaccacagg gctataactc gccgcattaa tcacattaac taaacgagcc acaatcgcct
      481 gtgcttcttc gccttttgcg gctgcaactt cgtaagctgt gccggcaatc gtaatacgca
      541 ccacaccggc ataagttact gtgccggtaa aactaacttg ccctgttgct gcaatacctg
      601 cctcgtggtc ttttaagccc accaccgtta aacggattag cggattattt tggattgctt
      661 ggcgaaccat taaatgagct accgagcctt taccaaataa attttccgcc tccacatcgc
      721 taaaaatctt ttgcggagca gtaaaagcag cctcaccgtt tagcattggt gcaacaatta
      781 gcacctcttg ctcattggtc ggcaaggtgg ttactgcatc tttgttgttg tattcggtca
      841 gcacacttgg tttgcgaata ctgttcggga ttttctcaaa ttcaattttt gacattattt
      901 gccccctgtt tctttagcgg atttggtttc tttgacgaca atcaaatcgc catccgcaat
      961 gcggcgttga tagtaaaggg tgttttcaac ctctactgcc tcttgttcaa tatagtgatg
     1021 cggtcggttt tctaccggca cacgcacccc tttagcggct ttcactttta acatctaatc
     1081 accatcctta aattctgttc taaatgccgt ttcggcattg ttattcgggt caaaaatccg
     1141 attattaaag cccgataaat cgccttgcgg ttcatctagc ttgccttgat actgcttaaa
     1201 gacttgctca ttcggctcaa ccccttcggg gaatctacca tcatcaagca cattgcactc
     1261 gttgtagctg atttcaaact caatagcata agcagagagt ttctctttct tcacttccgc
     1321 attattccaa atcgtgcgga ttcgcttagg ctggataggg tggactaaac cgtctaaagt
     1381 ctggttaatc aataaggttt tcaccgctcc cagcaactga ttaaccccca cctcacgact
     1441 tgttacccca cctaaacgcc cagcagtctg atttcgcatt gagcgagtaa taaccaacac
     1501 cacaaacaca tcagtggctt gatagcgttt acctcttact cccattgatt tcgcctcgaa
     1561 cgccgagcca ccataagaga caagacaagc aggcaaacgg agaacatcta acttctcatc
     1621 gttaatttcc ccggcatacc cagcaacggc atacaccatt ttgcctaagc ccagcgttaa
     1681 acgctcaatc aaagcacgct caattttgct aatcatcgct tatcacgccc ccaaatacgg
     1741 ttgcccccgt taaaaaactg cactgtattt tcgccagtag ccgattcttc ctcattggtt
     1801 tcatcaaccg ctaacgacac tacgccctta gagatgtttt ccagctcttt taagcaaagt
     1861 ttgtagcggt tttccacctc ttcggtcatc gttactaatg atttgctggt taaatgataa
     1921 cgagccaaat cacagcaaat acgctttaaa ttttgcggta cagtctttaa tggcagacgg
     1981 taacgcccac ttaaatagcc atcaatttgg ctggaagagt ccgctaaagc tacttcaaga
     2041 gtcgcttcat caaccacgcc taccatttca cggtcggtta gctcaatgga ttcctgttcg
     2101 ccaattcgca aaacgaaatc atcaaccaac gcatacatta cgcatcgccc tcaacaacag
     2161 gtacaaactc caaataaggg tcgttggcta aggtaataat ttgttcatca ctcaaggctt
     2221 tacgagcaat ttctaccgcc gtttctttat taaaacggta gccacaacgc ccataggtgg
     2281 cttgtgggtg gatagatttg agcttaactt caaaagcaat aggatttatc aaagcaccgt
     2341 catcaggctt agtttcactt tcaggcggtt taggttgttc atccgtttta tcttcaggct
     2401 gttcattcac cttatcttca agcggtgtgt tttcgtttgt gttcaaagct tcattgtcat
     2461 ttttctttgg ttttgccatt ttgctaccct ctcaaaatgg gcgtattgct acgcccaaca
     2521 ttaaacttat tcagcaataa atggattcac taccactttt aacacacctt ttaaggtgtt
     2581 ggttgtgccg tcaattaatt ctgcttcgag taatttgcgt gcagcaaact caagcgaagg
     2641 tggcacaagc aaagtggtcg ggcgaatatt taactgctta tcgccatcgc cttttaaggt
     2701 gcgcattgca gttaatactt tttcaagggt ttcactattt aactcactat cttcaacacg
     2761 gtgaattaac tgccagaaac caaaaccggc attaccacga gcacgcacac cccataaata
     2821 ttggtctttc ataaagacgt ggtctgactc acttggatca aacttcgttt caatttcagg
     2881 tgtagtacgt tcttgccaaa ttaacggctt aatggcttgg ctatcatcta gcacatagaa
     2941 cgcaggctta ccgctggcag agcctgtggt gatattactt tgtgttttac ttgtgccagt
     3001 tccatcaaca ttctgataaa cagggtgatc ggtatcaaag aagttctgcc cgtcatagca
     3061 aagggttgtc ttaccttttt tcaacaaact aaataccaaa tcatcaggta attcagccgc
     3121 actttgtgcc gcttgtttca ccattggggt aaataagccc acttggtcat cttcaatggc
     3181 agtacgaggc acagcaacgg ttgattcaaa taatttattc tcaatcgtca ttccttgtgc
     3241 ttgcatattt ttaatttgac ggtcgcccac ccactcttgc attttcggga attgtcccag
     3301 ccaagcatag gtattagtag cggtgctgga gcttaccttc attgcaaccg ttccccattg
     3361 tggttcaagc acttttaaac cagcactaaa ttctttacga aatgcagtat caagtgcttt
     3421 taataattca gattttttaa acattacttg gattcctctg ttttatattt ttcaatgtaa
     3481 gctgcttcgc ttaaaccaag cgattttgct gctgcaattt ccgcagcaga taacgccact
     3541 ttctccgtac ctttgttcgg gtcttcaccc cccgactgcg tacttgctaa agcggggtta
     3601 ggtgttaccg ttttcaaaaa gtcggataaa gccactaaat cttgcttacc gagcttttcc
     3661 gcccacgctt tttgagccgg caataaccga ccgtcagaaa gagcggtttg aattaacgca
     3721 tcacgctctt tatcgttgat ttgctgtttt aagccgttca gctcggtttg cactgcttgc
     3781 aagtcgctta acgccacaaa cttcgccggg tcagggtgat tcactttggc agagagtgca
     3841 accacttggc ttttctcttt tgccagctcg gtataaacat cacttaacgc caccgggctg
     3901 tcgcctttgg ctttctcaag tgcggtcagt ttttcggtaa tctgctcatc ggtcgcattt
     3961 gccgacaatg caaataattt aattaagagt tctttcattt ttggattttc ctcttcgggg
     4021 gttaaaaatt tggcaaattg gctagacatc gcaaccacct cttgcagatt atgcaaggca
     4081 gggcggttag ttaaggcggc attaagtacc ttaattacca ttccgctgcc gtctgtcaaa
     4141 aacagtggcg agagatagcg ataaacgccg tctttaatct cttgggtcgc ttgtggtgtc
     4201 cacttaacat ccgcaaacaa gccttcgccc gagatatatt ccgccttggt aatccaaccc
     4261 gcagcagggt tgcctttgcc gttctcggcg atgtacaggg tctgatgctc ataatcaatc
     4321 atcagatcaa tcgcagtgtt gttaatatca tcggctaacg catagccatt ctcgtcacct
     4381 acataccaac gtcctccacg cccgtcttga gcctcaaacc aaccaaaagg gaaaagttga
     4441 atacgtccat ttgcctcttg gttgagttta aaactcaatg caatggggtt tagtttgaat
     4501 ttatgcttaa acacaaaaac acctcaaaac aaattaatga ggctaaagaa tagaagattg
     4561 agaaaaaaga gtaacgggga gcaacttcca caagttgcaa attttcagaa aaaaacaacc
     4621 gcttgtattc agcgaggaat gtaacccatt ttaaaacgct ttaaatccgt tttaaaaaat
     4681 tttaaaaaag ttggaatgat aaatcaccat aaaaaaaaca aaaacgccac agagagcgat
     4741 ttaggggcta tctgtggcga ttatcttatc gcttaatcca gcagtttttg ccagtaggct
     4801 tgcacatcgt ccaaaatatc ttgcctgtct tgcgaggtta attgtaaaaa aggtcgggct
     4861 tcaattttta ctttacgccc acgcccagcc ataccaccga attgatgaat agcagcataa
     4921 ggctcatttg tgccaacaat cgccgaatca ttattataat cagcagtaat gctgcccatt
     4981 aaattttccg tatcaactaa cggcgtgcct tgccgatgtt ttatacccag ccatttcggg
     5041 cgaccgccct catcaaaatt ggtcagtacc gccgattcca ttttgccggc aatattccgc
     5101 atcaagtctg ttttatttgc cgttttagca gcaatacggt taagcgtggc aataatttca
     5161 tcaatgccgt ggatttggat ttcaatcatt tttaaccttg caagttgatt tttaaaataa
     5221 acaggggtat attcctttta cggttattag aaaagcggtg ataatctccc tgccgcagcc
     5281 tatttgagat ggcaagtcct gctcaaatga ccgagagcgt gtgtaagtga ccgggagcct
     5341 tacctaataa ccgtattttt caacagcagc ttatccaatt ctttttgtcc aatctccctt
     5401 gttgatacca gaaataattc accaaactct tctaagtatt tcaccacaac aagaatacga
     5461 taatgctcaa agtttcgtat aaagctgaaa tttttgcctt cttgcaaaat atgattaggc
     5521 tgaaaaatta catcaggaat atttgcatac acatcaaacc caaaatcctg cccctcacgg
     5581 ctataaaact gcttaatcag tgtgtcatcc gaaagccata ccgtgccgac tttactgtcg
     5641 attaagcgtt gtgtttcctc acttaaccga ccagcagcaa atttaaagtt ttgattaagg
     5701 gcatttcgca ctttaaccat ctcatcaggc gagagttttt tcgccccatc tttggcaagt
     5761 gccacagcct cttctaactt gttaaacgcc tgcttaaatt caccaccgct catttctgct
     5821 ttggtaaatt ggtaagccag cttttcaggg tataaatcca aattcggctt ataggttaaa
     5881 cgccccacat tataatcaaa acctttatca gccaatcgca ccgtaccatc agccaattta
     5941 aagccaatgg tttcctcttg gttgcctaac ttatctttcg gtcgttttgc cttcactaaa
     6001 aacggctcgc tactgccgac ttcgtcaatc cctttacgct ttaaatcccg ctcacttaac
     6061 gcaatcacgg tacaacggca attaaagccg ttcggcggat aaaaagtcgc ccaaaacgga
     6121 tcgtcataac gataaatctt accctgtaat gcttggtgag cagggcgggt gcgttggtcg
     6181 cctaccgccg aatattgcca ataagggcga ttatccacat tatccatata ccgctgataa
     6241 cgagccgcag aataagcctg ttgcatattg gtacgataaa tcgtattcaa gcggcgaggc
     6301 gtgccgaaat gctcgccggt tttcgggtcg gcaagcagtt tgccatcaat gccacgacta
     6361 atcgtcgtgt ccatacaccc agcctttccg ttcaaattct gccgtaagcg ttttcttcca
     6421 ttcattaaag gatttcccct cacgccgtgc tttttccatc gactcataaa tatcacgggt
     6481 catttcaagg ctagtgagct tgctaatggt ggcggctcgc cccaatgcag aatcaaataa
     6541 ttcctgctta aacactttat tcgcaagcaa cttcttctgc cgtaaaaact caatcgcctg
     6601 cttaggctct agtccaatgg caaaattaac tttctgcatt cgcagcccct aataaatccg
     6661 ccaaaaataa cgcattcgct aaatagcggt cgtgttcttc actcactaaa tcagggtagg
     6721 ctgccgccaa tttttctgct gcctcatcat aagagctaca cgccattacc accgccaccg
     6781 cctttttcgt gatggggtca aattgggcgt taaaatccgg cacggaaaaa gcctcgtctg
     6841 ccaaatcatc taaggcatct tgctctttaa tgcccgtttt ggtttgggcc gacaaagcgt
     6901 gaaccttgcc cccacaaccg cattcgcaag cggtcatttt ttgcggaaaa tttgcggata
     6961 accccaccgc ttgtggcggg gcagaacgcc ctaacaccgc ttcattttct tgagcttcgg
     7021 gaataccgag tttatccatc gcccactgca ccggaatcgg cattccaata tccaccaatt
     7081 tcggcaagct ctcggcaaat aacgccaagt cggcaggctc tttggtatca aactcaaaac
     7141 tcggaatgcg ggttgggtcg atattgccaa aattaatttg cagaaacggc agaataattt
     7201 gttgggtaaa cgtctgcccc agctgtttca cgtccgacac caacaaatca cgccgcactt
     7261 cgttatgcac attgccgagt gcattggtag agcttttgcc gtctgcaccg ctggttaagg
     7321 tttgccccaa aatcaagcgg gcgatagact tctcacacca atccaccatt tgcaaaaacg
     7381 gattattgcc ggctgcaccg cctgcattag cggcgttatg caactcaata ctcatcgact
     7441 ccggcataat tccggcagcg ttgtgtccga tttccgctaa tgcacgttta agcgtttgtt
     7501 tttcgtttgg tgttgcccct gcaccgtatt taccaatgcg gataggcata ccatacagct
     7561 ccaaaaactc ggcaaagtcg tggatagagt agtgtttaaa catatacagc caagccagcg
     7621 agcggaataa attattgcgt gccgcctgtg tggagcggga tttatgcgta tgcaccaccc
     7681 agccaaattc tcgtaatggc tcaccttcgg tattttgtcg ggttttcagc aacagattgt
     7741 cgtgcttatc ccacttaaac cacgattgag gacggtggat aaaggcgttc ggataccaca
     7801 atttaccgtt aaacgcccat tcaatttcga gggcagcaaa accgtgtccc acagcgtcca
     7861 tacagtccat caccaaatct tcaaggttgc cgagctgata aaataactca tcaacctcat
     7921 cacgcagttt ttcttcctgc ggtgtggcat tgcgaggggc aacaatcgcc caatctacgc
     7981 ctaatgcggc acgcttacgg gtttggatat tggcaaaaat agagctgtcc cgctcctcaa
     8041 tatccataaa taattcgtgt tgagcggtaa tatcgccatt ctccgtatct tcaaaaatcg
     8101 ctttcatttt agcaggcgta ataaaattgc tcggatggtc ggagagtacc cgacctgtag
     8161 cggtaatttc ggctaaatcc gtctgcaatt cttgattttt aatcgggttt aaattcggtt
     8221 taatctgctt gttatgcttc tttttgctca taaattttcc ttttcagagc ttagttacgc
     8281 tcaatatagt ccccctcttt agcaaagagg ggagttacat taatgccgcc acttactgcg
     8341 atactcaccg tcaaaatcat ctacactctc ccactcaatc ggggcagagc tgctgagtgc
     8401 atttcgccat aacatttcca acgcatccgg accatcatcg tgatcggctt tcggaaaatg
     8461 gcgaagctgg ctttcaagcg tagattgcga gcggtgcaac aaaatcaaac cgttggcaat
     8521 atgcggttgc aagctctcaa tccgtaacat cttgtcactg ttcggcttgg ttgccgttgc
     8581 cggcaccggc ttaccacgct gggcagaacg cttgaccagt tccgtctgca aaaactcctg
     8641 aaattgcacc gtctccacaa accagcggtg acagttatat tgcgaatgca gtctaatcac
     8701 gtcctcaata attaaatccg gcaatcgttt tttgatttgt gcctcaacaa catagagctt
     8761 gccactctca cgatgatagc caccgaccaa aattgcagat gggtcacggc ttgccccagc
     8821 tttccccatt gaggggtcta acgccccgaa ataaatcagg tcatcaggca gttccgtcca
     8881 atactggata ctgttggcaa aaatcgcatc atcacccgag acagggtcat tttgatactc
     8941 ggagtcaaat gctgagtgcc catcactagc acggattttc atcaagtaga ggatagggcg
     9001 agctaaccaa gagactaacg ctcctttatc catttctgct ttatgctgtt gataaaagag
     9061 atcagacata gtgtcatcgt ccccttcttc cgagaggtat atattttccc attcgtccca
     9121 taacgccata ttgccgggaa agcgtaaaat ggctttaaaa cgaactcgcc gccaaccttt
     9181 tgtatttaaa atacggctaa gcacactgtc ataatgtaga attgtgccga catagataac
     9241 atcaaacttt tcacctgcag caccaagttt taaaactgct tttaaaaccc agttatgcaa
     9301 tttattacgc tgtgcaggtg tttctacgct ttcatcattc tcaatatcat caagtactac
     9361 taaatccgga cgataagctc cgtggcgacg accacgcaat ttttgcccag cccccacagc
     9421 ttcaactttt tgttttttag ccgtcataat gacacctgca cgccaaacct tgccttgtgc
     9481 aacctcgggg aaatcaattc ttaaacgagg gttagattca atttccactt taatagcttc
     9541 aagcatactg tatgcctgtt ctttggtgtc catcgcaata atgatgtatc tttttaaatc
     9601 acggactaaa caccacagcg ggaataattg cgtacaaatc gttgattttg cctcgccacg
     9661 aggggctgca atcgcttggc ggactgactt agaaagatca cttaccgaaa gcggtaaatt
     9721 ctcaaagaga taatgatgca actgtgattt atgttcagac cgcacatagt gtggaaaata
     9781 agcctgcaca aaatactcaa agccgtgaac agggtctaaa accttttgac ggcgttcgct
     9841 aatggcttgt ggtttatcgt cccaaccctc aaaactcgct tcgatatttt gttgtaactg
     9901 tcgccgtaat tcttccagtt ctttttcaaa ttctttgatt ttcataaatt acatacaagc
     9961 tgcgataagc aacaaccagc cccaaccgtc tgtaccgttg agcattagtt ttattgctcc
    10021 gaaaatacaa gcaagttgga caatccaacg gaaagagtaa tgcttatgca ctacagtttg
    10081 ttttttctta gccattactt aaactccttt ttgaattgca cttctagctc atctaacatt
    10141 tctaaaaagt caggcaataa atgcggtttc ttggttttga cgatattcgc catcatctca
    10201 atcgcacgca tagcggttgc cattgcactt gtttcaggca atagtttctt gctcgatgcc
    10261 gtcatcttcg caaacgaatc agccagagca gctaatgcct caaccttagc tgcggttggc
    10321 atttcggtgt tttcctcaag ctccgtcatc aacgtgcggt acttaattaa aaaaccggct
    10381 aacaagcctt gagcgatatt ctcaatacca ccgcttgcca tcgcttgcac atcacgagct
    10441 ttttcccagt tatcaccgtt cttttcagca gccgctttcc aacgccgtgc cgtgccgaat
    10501 gatacccctg cacgttctgc tgccatttcg aggcttaaac ggtcaaacac ataggcttgc
    10561 cgaaccgctt tttgtacttc aacatcgtgt gccatacgcc ctctacattc caaatttcag
    10621 gcgtaacaac tcaaaaccca cagcaacaat gccaccaccc aagccaccgg caactacagc
    10681 atcacggcgg tttttacgtg ccatttcatt cactaaacga ttagtcgctt ggatttcacg
    10741 gtgtaagcgt tcgatttctt cgttttgttt atccacctta tcgtttagct catttaatcc
    10801 acctaaaatc aggtctaatt tttccgaatc ggtttgcttt tgttttttac ggctcattac
    10861 ttatccgcct ttttatcaag tttttggttt acttctttga gcgagtctaa aatatcgtcc
    10921 agcttttcct taatccctct attcacttcg tgggcaagct ctttggattg atatttgctc
    10981 tccatttctg cttttagctc ttttaccgtt tgctcattgc ggttgatacg atcaaatatg
    11041 accttgccta caaacgccac taacggagca actacaaaag agatcagcat ctgaaacagt
    11101 ttttcatcaa tcataacgcc cccttttggc tcgcccgacc gggtgttgat taccttgtgc
    11161 caccgccgca cgcaccacgt tatgcaattc tgcaaggtca ggacggcggc gataaaaacg
    11221 ccattgttgc caacgctgtc tgagtttttt aattaacttc attctggcaa acttcctcat
    11281 aggtcagatt gtgtgcaagc acttggcgtt tcgtttccat tgtgtccgca cggctcgggt
    11341 aaatcagacc gaacgccgtg caacccgttg tcgtcacgga agtaaccgtg ttggtgcaac
    11401 tgctcatcaa tggcactagg ctgaatacgg cgagtttcac taacgtgttt ttgctgaatt
    11461 ttggcatttt taacctctgc atttttttgt tgaatttcga ccgcttgttg ctgcttttcc
    11521 gcctttaatg tagcggtaag tttccgctcc tgctttaatt gccagctttt ataaaaggca
    11581 taggctaaaa ttgtgcttac tacaccaacc acacctgcaa tttgttgagt aatcattctt
    11641 cagcctccct tgagcgttct ttttgtttta acgcacttac cacccctttt gtggctgggc
    11701 tacccaatac acaaatacca gcataagcaa accaccagtc ggaaataaac ggcttatcgt
    11761 aaaggtaggc gtgaattaaa atgcccgata acactaacca gctcataaac tgaataaagc
    11821 cagtggtgct ggctgtgccg tctttattgg taattaaatc aagtaaaaat tgcttcacga
    11881 ttattcctcc accgtgtctt tggcaaaata acgcaaatta cccgccattc ggttaatcca
    11941 acctctacca aaacggtcaa agtgtttgag tttggtgtaa aactcaaggc gttctgcctg
    12001 aaataacaag cccacatccg caaccgaata acgctcaatc gcagccaaag tcactttacc
    12061 gataatgccg tcatcagcca cacctaccgc tcgctgtaac attcggctag cattgcccga
    12121 accgtggttt acacacgcat ctaaaaactg aaaagccaac tcaggcggga actgctcaca
    12181 gttataacgt tgccaaaagg ctttgaggta aatagttttc gcatccgcac ggctcattgc
    12241 acgcatagag ccggtatagc cattcgcacg ggcagtatgg atagtgatac cccaattcgt
    12301 ttcgccaccg gggtctttcg ggtcgttcac ataaccgccc tcgtgtccga taagacggtc
    12361 aaatgcaaga ttaaagtcag caatagttgc cttgtttttg ataggttcag tcataaaaaa
    12421 agcctcttta aattcaatga tgatttaaag agactttaat gatttagagc aacggggagc
    12481 aggcgaaagg attccacact taaaacaagg tagcttgcga aacggtatgc ttacgctgat
    12541 aatatcgtac tgcctcccac gcaacacgat cacacacgct gtatttaggg caaatttgca
    12601 taatcgcaag cctgccactt agccctcctt gctcggttaa ttgacaataa tcggcataaa
    12661 tctgctgatt acgcaacatt cttaatgcgg tttcacaacg tggcaaatag acctcgcaag
    12721 ctcccatata agcctgtaat ttcactgcat catcttgccc taatacctct ttgagcttat
    12781 taaaatagag ttttccgtta gaaaattgga atgaaaagcc accaaaggct ttgattagct
    12841 tttcagttgc cggcaaacca atcacgccca caatttcttt caccgtttcc ggcaaataat
    12901 gttcgacact ttcaaattca gacataaaaa atccccttga ataatttcca cgaaagccat
    12961 tatccaaggg ggttattcaa atctgtaata cttacttaaa aatttttttg caaatttttt
    13021 aaaagctcag cccattttgt gtacggcata tctgatctag ctgcggttga tgacagttct
    13081 gtctcccacc gcattactat tctttgcccg acccctaata tgttagctac ctctgtttgt
    13141 gtgaggttat ggtgctttct tagcattttt aagttgcttg gtgtgtatcc aaactctggg
    13201 ttttcaatca ttcacctccc tccattaaac tagctattaa atacagcaac aacgataggg
    13261 tttctaataa tgctctcgcc tttatcttct ccgcctcttg cactatcgcc tttaactagg
    13321 ataaagtttt gcccacagta tgactggaaa cctttaaatt caacatcaaa ttttttgcaa
    13381 gcatcacgac ctagattttt aatagcattt aacaaacctg cttcatctgc attttggatt
    13441 cccattgtac aaatgccgtc taattcttca tctgtttttt caccatcgac ccaaacaaaa
    13501 gaatttccta attcatcgcc aacttgatgc acatctgtag ttgctcttaa accataaaca
    13561 gcgaagcagt cttcatcggc atcgtttagt aaagcattta aaagtttttg gtaatctgtc
    13621 attttaattt ctcctgtttg gctatg
//
LOCUS       DANMBQ010000063        13551 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.063, whole genome shotgun sequence.
ACCESSION   DANMBQ010000063 DANMBQ010000000
VERSION     DANMBQ010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13551
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.063"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..505)
                     /locus_tag="PXE92_001520"
     CDS             complement(<1..505)
                     /locus_tag="PXE92_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760763.1"
                     /translation="MADPHIQSPMDFWDYLTVIIYRSGFVLATLMLLLLPYYPQTAQY
                     GLLVSGTMLASSLHLYAKSFRLIFQFSVWIGLLGAVFNFPLLAFGAMLLVIGGLSYKE
                     YFCFRVFGLNFQPLLVAVLWIAFALEWSLLVQILSLVCGLLLLVLSIQKWRMPLHFDI
                     GDKSKYQI"
     gene            complement(528..1505)
                     /gene="dusA"
                     /locus_tag="PXE92_001521"
     CDS             complement(528..1505)
                     /gene="dusA"
                     /locus_tag="PXE92_001521"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HDL5760764.1"
                     /translation="MTNEIQPFYRGRFSVAPMLDWTTRHCRYFHRQFSRQALLYTEMI
                     TAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQLAHCAKLVAERGYAEINLNVGCPSD
                     RVQNGMFGACLMAKADLVADCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQ
                     PYSNDFIVHARKAWLTGLSPKENREIPPLDYDRVYQLKRDFPHLKISINGGIKTIEEI
                     KQHLQFVDGVMVGREAYQNPSMLGEIDSQIFNENRPLVTAKEAVEKMFPYIERELAKG
                     VYLNHIVRHMLGAFQHCKGARQWRRHLSENATKSGAGVEVVEQALAFIG"
     gene            1856..2833
                     /locus_tag="PXE92_001522"
     CDS             1856..2833
                     /locus_tag="PXE92_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL5760765.1"
                     /translation="MSRNLFQKRLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQ
                     DYRTTINDHERHVLTRAMLAISQVEVNVKRFWGELYCYFPKPEMDDVGGTFAESEVRH
                     KDAYSFLLEKLGLNEMFSQIHEIEPLMNRIRYMESFMKDKDAGKGEFVLSLVLFSLFV
                     EHISLFGQFIIMMSFNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELF
                     TPEFFEDLQTLANQAFEAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLE
                     PPHDIDPELLKETEWFDIEILSTKETDFFNKRSTDYSKKMKQITADDLF"
     gene            2820..4487
                     /locus_tag="PXE92_001523"
     CDS             2820..4487
                     /locus_tag="PXE92_001523"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL5760766.1"
                     /translation="MTYFNTDRPDFHWLNEDSRLFLQRGYLLEGTTALDRIRFIAEHA
                     ERKLGIEGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTT
                     AEVGMMSKIGGGTSAYFGDIRPRGSLIKNNGKSDGSFNFSKLFDTVIDVISQGTSRKG
                     QFAGYIDIEHGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESMKAGDPYKRQLWAKLL
                     QRKTETGIPYLFFKDNANAGRPDVYKDKNMTIHASNLCTEIMLPSSNEESFVCCLSSM
                     NLLYFDEWKDTDAPETLTYFLDVVMSEFIEKSQSIPFLDRANRFARRHRALGLGVLGW
                     HSYLQANNIAFDSFQAMQKNNEIFKTLQAKTLKASQELAQRFGEPEILEGYGRRNTTL
                     MSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQEKGLDTEEI
                     WTSILQNDGSVQHLEQLSEHEKEVFKTFAEISQLSVIQQAAQRQKYIDQGQSINVMIH
                     PATPARDLNQLYLTAEELGLKSIYYQNSMSAAQVFNRNLLSCSSCEG"
     gene            4491..4910
                     /locus_tag="PXE92_001524"
     CDS             4491..4910
                     /locus_tag="PXE92_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760767.1"
                     /translation="MGNLSHTSPNTIVEVVGEFPEITSSGYTFDKGPIQLRIGKHTAP
                     NKGFGVKHIEAEHMQEILNLGFTSVNEFVKAIIVENAKIFCEFSDLKGNHRPIILKAS
                     IGIVVLERKFLESGTIYSVVTAYRRTNPHGIQIGTMK"
     gene            complement(5145..5906)
                     /gene="nudC"
                     /locus_tag="PXE92_001525"
     CDS             complement(5145..5906)
                     /gene="nudC"
                     /locus_tag="PXE92_001525"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HDL5760768.1"
                     /translation="MNKGYWIIVSDFDIALEAGEIPFGSAEELGLSGREKLTIGQYQG
                     SPAYLVKALESDNQREFAYLRSQINRPPELSHLLHRAVSLNHFFQTHQFCGKCGEKTI
                     LASDEIAIYCNACGNRAYPTISPSIIVAVRKGRQILLANHLRHKGTIYTTLAGFVEAG
                     EAVETAVHREVFEETGIKVKNVRYFGSQPWAFPNSLMLGFLADYESGEIQLQEEEICD
                     AKWFDCEESLPEIPQQGTIAFELIQATLKLCRESK"
     gene            complement(5899..6582)
                     /locus_tag="PXE92_001526"
     CDS             complement(5899..6582)
                     /locus_tag="PXE92_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HDL5760769.1"
                     /translation="MKQPTFKRMTNKRSNFAKNLQKNPQKRPLTFAETTLVLLNKPYD
                     VLTQFTDEQGRKTLKDFITMPNIYPVGRLDRDSEGLLLLTNNGEIQHRLAHPKFDKQK
                     TYWVQVEGVPQPEDLAKLAKGVELKDGLTKPAKVRAIATPDFAWNIAPQIRERKTIPT
                     SWIELIISEGKNRQVRRMTAHIGFPTLRLIRVGIGQFRLGNLGCGEFQVLSENEKRKL
                     FTQLGLKDE"
     gene            complement(6579..7427)
                     /locus_tag="PXE92_001527"
     CDS             complement(6579..7427)
                     /locus_tag="PXE92_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5760770.1"
                     /translation="MEKRTLALLKVHGTAVLFGASGIFGALIQSSAETIVLGRVMIAF
                     AIISLYFLWKKQPLVKLNLQQMAQLAFSAALLAAHWVTFFVAVKVGGVAVATLGFASF
                     PAFVALFESLFFREKLRFREVVLLIAITVGLILVTPEFTFGNQATQGLLWGVLSALVY
                     GILAVANRRTMSKISGVQASWWQYIFATLFLLPLSITEFPSVSTQDWFWIFCIGFLCT
                     TLAYTLFISSLDTINARTASMIISLEPVYAIVIAWLCFNEVPTLKMIIGGLIILLSVA
                     WANLKK"
     gene            complement(7427..7912)
                     /locus_tag="PXE92_001528"
     CDS             complement(7427..7912)
                     /locus_tag="PXE92_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HDL5760771.1"
                     /translation="MPILAILFGIFFYIYCEISLLVNIGSIIGVLPTILLLVVISFLG
                     LWIVKLRGVYTLFSIKQDLSQGKIPTEAVGNSVMFIVAGILLIIPGFLSDILAILCVL
                     PFSRKWIQAFVINSVKNKVFMHFTAQTSSFSVTSAQDSNTFDAEFERKPDEQDQHNRI
                     K"
     gene            complement(7914..9236)
                     /gene="pepQ"
                     /locus_tag="PXE92_001529"
     CDS             complement(7914..9236)
                     /gene="pepQ"
                     /locus_tag="PXE92_001529"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HDL5760772.1"
                     /translation="MKNLFSTHLARLQQTVQSLLENAFLDGLWIYAGKAKTLFLDDQT
                     APFKINPYFNYFFPYPQAENCWLFLDGKNKPKIYFYAPEDYWVSTLKVPTEAFFAAEF
                     EWVLLRAENEIATFIQNPTACAFIGEDVELAKKLGFSHINPQKVLNSLNFARSIKTEF
                     EIESIYQAQFSALKGHQVAKEAFFAGKSEFEINLEYLKATQQSDLNVPYGNIVAINQN
                     GAVLHYTALDFDTHAKRHSFLIDAGTTVNGYASDLTRTYAFDSGSEFAELVAKMEQLK
                     LQIIAELSIGVNYLHYHTRMQQMISQLLAEHQFIHLSAEQIFEQGISRTFFPHGLGHL
                     LGIQVHDVGGFQQNARGSHKAPPEVYPSLRCTRELQENMVLTIEPGFYFIEMLLKPWK
                     NSALSSAFNWQKIEAFKAFGGIRTEDNIVMRANGAENLTANAAATLGG"
     gene            9247..9489
                     /gene="tusA"
                     /locus_tag="PXE92_001530"
     CDS             9247..9489
                     /gene="tusA"
                     /locus_tag="PXE92_001530"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HDL5760773.1"
                     /translation="MTQLTVNKELDTLGLRCPEPVMLTRKTIRNMEEGEILHIIADDP
                     ATTRDIPSFCEFMDHQLIQKEVDSTPYHYWIKKGLE"
     gene            complement(9556..9987)
                     /gene="rraB"
                     /locus_tag="PXE92_001531"
     CDS             complement(9556..9987)
                     /gene="rraB"
                     /locus_tag="PXE92_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HDL5760774.1"
                     /translation="MYNLDELRTETDETISSLLADGSDPEALYIIEHHVAHHDFDKLE
                     KLVVDAYKLGYEISEAEEVEDENGKVIFVCDIVSEIHLNADLITAQQKELLPLIEKAG
                     AEYEGWGTYFEDPNADEDEYGDDGEFFDDENDDFEDEPRRH"
     gene            complement(10002..10613)
                     /locus_tag="PXE92_001532"
     CDS             complement(10002..10613)
                     /locus_tag="PXE92_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDL5760775.1"
                     /translation="MKLNYHKTHFLTSAPDIRHLPEDTGVEIAFAGRSNAGKSTALNA
                     LTNQKSLARTSKTPGRTQLINLFKVETNCKLVDLPGYGYAAVPEQMKIQWQKALGEYL
                     QKRECLGGVVILMDIRHPLKDLDQQMIEWAVSANLPVLLLLTKADKLSQSARSKQVKM
                     VREAILPFQGDIQVEAYSALNKIGIDKLSNKLDSWFAPKLITE"
     gene            complement(10615..11031)
                     /locus_tag="PXE92_001533"
     CDS             complement(10615..11031)
                     /locus_tag="PXE92_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HDL5760776.1"
                     /translation="MSWYKALFSFNGRLNRRGFWIGFGIHFLFLFMVAMWINLAELSL
                     LSVLPLIITGFSLSAIIIKRLHDRNRSAKALLMALVPIICYLAAPYSQGIMQILLGQV
                     MPAFIGMLLFLEWGVFAGNPEPNQYGEQGLSFKFRE"
     gene            complement(11035..11865)
                     /locus_tag="PXE92_001534"
     CDS             complement(11035..11865)
                     /locus_tag="PXE92_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HDL5760777.1"
                     /translation="MFEYFLSLSPIWQAFLAGLFTWGCTIFGSSFVYFFKSVNRKLLD
                     SMMGFAAGVMIAASFWSLLAPSLEYAEADYGSLAWLPAAIGFLAGGAFIRLIDYVVPH
                     LHLSKPIEQAEGNDQLKQGLSKSTLLFLAITIHNIPEGLAIGVAFGALATQVSGVDAS
                     IMGAIGLAIGIGLQNIPEGSSLVLPIRGEGHSRKKAFWYGSMSAVVEPIAAVIGAVFV
                     LSMTAILPYALAFAAGAMIFVVVEELIPESQSSGNTDIATLSLMLGFVVMMVLDVALG
                     "
     gene            complement(12202..12317)
                     /gene="rrf"
                     /locus_tag="PXE92_001535"
     rRNA            complement(12202..12317)
                     /gene="rrf"
                     /locus_tag="PXE92_001535"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(12479..>13551)
                     /locus_tag="PXE92_001536"
     rRNA            complement(12479..>13551)
                     /locus_tag="PXE92_001536"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT         4151 a         3070 c         2563 g         3767 t
ORIGIN      
        1 aaatctgata tttgctttta tcgccaatat caaaatgcag cggcattcgc catttttgaa
       61 tactcagcac aagaagcaac aagccacaga caaggcttaa aatttgcacc aataaagacc
      121 attctagtgc aaaagcaatc cacaataccg ccactaaaag cggttggaaa tttaagccga
      181 atactctaaa acagaaatat tctttatagc ttaatccgcc gatcaccagt agcattgccc
      241 cgaacgcaag caaagggaaa ttaaacacag caccaagtaa gccaatccaa acagaaaatt
      301 ggaaaatcag gcgaaacgat ttggcataaa gatgcaaaga agatgccaac attgtgccag
      361 atactaataa accatattgt gccgtttgcg gataataagg caataaaagc aacatcaatg
      421 tagctaacac aaaaccgctg cggtaaatga tgacggttaa ataatcccaa aaatccattg
      481 gcgattgaat atgtggatct gccataactg cctccttaaa caataaatta gccaataaac
      541 gcaagggctt gttccactac ttctacaccg gctcccgact tagtggcatt ttcacttaaa
      601 tgacgacgcc actgcctcgc tcctttgcaa tgttgaaacg caccaagcat atggcgaacg
      661 atatgattta aatagacacc tttggcaagc tcacgttcaa tataagggaa catcttttcc
      721 accgcttctt ttgccgttac aagcggtcga ttttcattaa aaatttgcga atcgatctcg
      781 cctagcattg acgggttttg ataggcctca cgccctacca ttaccccatc aacaaactgc
      841 aaatgctgtt taatttcctc aatggtttta atgccgccat tgatgctaat ctttaaatgc
      901 ggaaaatctc gcttgagctg ataaacccga tcataatcta aaggcggaat ttcacggttt
      961 tccttcgggc ttaaccctgt cagccacgcc ttgcgggcgt gtacgataaa atcattgcta
     1021 taaggttgca ctttttcgat aaaatcacac aaaaattcat agctgtctaa atcatcaatc
     1081 ccaatacgat gtttaaccgt gaccggaatt tccaccgcat cttgcattgc tttaatacaa
     1141 tccgccacta aatctgcttt tgccatcaaa caagccccaa acataccgtt ttgcactcgg
     1201 tctgacgggc aaccgacatt tagattaatc tcggcatagc ctcgctctgc caccaatttg
     1261 gcacaatgag ccaactgtgc cgggtcgctt ccacccagtt gcaaagccac cggattctcg
     1321 ctcggatcat attccaacaa atcatatttg gcgtgaataa tcgccggggc ggtgatcatt
     1381 tcggtataaa gcaaggcttg acgactaaat tggcgatgaa aatagcggca gtgacgggtt
     1441 gtccaatcta acattggagc aaccgaaaaa cgtccacggt aaaaaggttg aatttcgtta
     1501 gtcataaaaa tatcaaaata aagcggtaaa aaatcagtaa aaaataaccg cttgtaagcg
     1561 attcaaaaca agcagccatc atactcgaaa aagccagata aacatagttt cctcaaggct
     1621 tccccatcta tctgcgcact tttaaaacaa ccttaaaaca caatatatag tgtttcaaca
     1681 tcaaatcaca cacaacatat tgaagcaaaa atttacaaaa ttatttttct ttataaatca
     1741 ataagctacc aaagaccaat aaaaaagagt gtttgtcaag acttgtcttg aaactttttt
     1801 tgcatacaat catctaccag ttccaaacat aaactttaag atagagccta cgaatatgtc
     1861 tagaaacctc ttccaaaaac gcttaaatat taagccgtat gagtatcctg agcttcttga
     1921 atttaaagat gcaattcgcc attcttactg gttacacacc gaatttaact tcaccggcga
     1981 tattcaagac tatcgcacca ccattaacga tcacgaacgt cacgtgttaa cccgagcaat
     2041 gcttgcgatt tcacaagtag aagtgaatgt aaaacgtttc tggggcgagc tatactgcta
     2101 tttcccaaaa ccggagatgg acgatgtagg cggtactttt gctgaaagtg aagttcgcca
     2161 taaagatgct tactcgttcc tattggaaaa attaggccta aatgaaatgt tcagtcaaat
     2221 tcatgaaatt gaaccattaa tgaaccgcat tcgttatatg gaaagtttta tgaaagataa
     2281 agatgctggc aaaggcgaat ttgttttatc gttagtgctg ttctctttat ttgttgagca
     2341 tatttcattg tttggacagt ttattatcat gatgtcgttc aacaagcata aaaacctgtt
     2401 taaagggatt tccaatgcgg ttgaagccac ctcaaaagag gaagaaattc acggtaaatt
     2461 cggaattgcg ttatacgaaa ttttacgtga cgaacacagt gaactattca caccagaatt
     2521 ttttgaagat ttgcaaacct tggcaaatca agcgtttgaa gcagaacgtg gcatcttaga
     2581 ctggattttc gaagaaggtg atttaagctt tatcaccaaa gcgacggtag aaaattacat
     2641 taaaaaccgt tacaacaatt ctttaagcat tttagggtta gagccgccac acgacatcga
     2701 ccctgaatta ttaaaagaga ctgagtggtt tgatattgaa attctttcaa ccaaagaaac
     2761 cgatttcttt aacaaacgta gcaccgatta ttctaaaaaa atgaaacaga ttaccgcaga
     2821 tgacttattt taatacagac cgcccggact tccactggct taatgaagac agccgtttat
     2881 tcttacaacg tggctattta ttggaaggaa caaccgcatt agaccgcatt cgttttattg
     2941 ccgaacacgc agagcgaaaa ctcggcattg aaggctatgc cgataaattc tatcactata
     3001 tggcaagagg ctacttctcg ctttcttcgc caatttggtc aaactttggc ttagatcgtg
     3061 gcttaccgat ttcttgtttc ggtagctaca tcggcgactc tatccatgaa attatggtga
     3121 ctaccgctga agtgggcatg atgagtaaaa ttggcggtgg tacttcggcc tactttggcg
     3181 atattcgtcc gcgtggctcg ttaattaaaa acaacggtaa atcagacggc tcatttaact
     3241 tcagtaaatt atttgacact gtgattgacg tgatttcaca aggaacatca cgcaaaggtc
     3301 agtttgccgg ttatattgat attgagcacg gcgatattga cgaatggctg gatattcaca
     3361 ccgaaggcaa cccaattcaa ttaatgtatt acggtgtgtg tgtcggtcac gattggttag
     3421 agtcaatgaa agccggcgat ccatacaaac gtcagctttg ggcaaaattg ttacaacgta
     3481 aaaccgaaac cggtatccct tatttattct ttaaagacaa tgccaacgca ggtcgtcctg
     3541 atgtatataa agataaaaat atgacgattc acgcctctaa cttatgtact gaaattatgt
     3601 tgccttccag caacgaagaa agtttcgtat gctgtttatc gtctatgaac ctactctact
     3661 ttgatgagtg gaaagatacc gatgcaccag aaacattaac ctatttcctc gatgttgtaa
     3721 tgagtgaatt tattgagaaa agtcaatcaa ttccattctt agaccgtgca aaccgctttg
     3781 cccgtcgcca tcgtgcatta ggtttaggcg tgttgggctg gcacagctat ctacaggcaa
     3841 ataatattgc ctttgacagc ttccaagcga tgcaaaaaaa caacgagatt ttcaaaacgc
     3901 ttcaagcaaa aaccttgaaa gcctcgcaag aattggctca acgcttcggc gagccggaaa
     3961 ttttagaggg ctatggtcgc cgtaatacta cattaatgag tattgctccg actaaatcca
     4021 gtagctttat tttaggcagt gtgtcgccat cggtagagcc gtttaaatcc aactactatg
     4081 taaaagattt agcgaagatc aaaaccgtgt ataaaaaccc gttcttagag aaattactcc
     4141 aagaaaaagg gctagacacc gaagaaattt ggacgtctat tttacaaaat gatggctcgg
     4201 ttcagcattt ggaacagctt tccgagcacg aaaaagaagt atttaaaacc tttgccgaaa
     4261 tcagccaatt aagcgtgatt cagcaagctg ctcaacgtca aaaatatatt gaccaagggc
     4321 aaagtattaa tgtgatgatc cacccagcca caccggctcg tgatcttaac caattatact
     4381 taacagcaga agagctgggc ttaaaatcca tctactacca aaactcaatg agtgcagcac
     4441 aggtatttaa ccgtaaccta ttaagctgct caagttgcga agggtaaata atgggaaatt
     4501 tatcgcatac ttcacctaat actattgttg aagttgttgg tgaatttcct gaaataacat
     4561 ctagtgggta tacctttgat aaaggtccta ttcaattaag aatcggcaaa catactgctc
     4621 caaataaagg ctttggtgta aagcatattg aagccgagca tatgcaagaa attcttaatc
     4681 taggatttac atcagttaat gaatttgtca aagctatcat agtagaaaac gctaaaattt
     4741 tttgcgaatt ctcagattta aaaggcaatc atcgccctat tattctgaaa gcaagtattg
     4801 gcattgtggt tctagagcgt aagtttttgg aaagcggtac gatatattca gttgtaaccg
     4861 cttatagaag aacaaatcct cacggaatac aaataggcac tatgaaataa agtacgttag
     4921 tgttataatc agttccacgc aagagcattt gtagaaaata acaggcggat ttggttttct
     4981 actgtgggcg gcaggtttcc gctaacctgt aatagctatt taatttttat attaaatcct
     5041 gaacttgaaa cagactaagg gattgctgcg gtagctaaga atacaaacct ctctataatc
     5101 atatagagag gttttttctt attgatgagc acaagttaag ataattattt actctcccga
     5161 cataacttca aggtagcttg aatcagctca aaagctattg tgccttgttg tgggatttca
     5221 ggtaagcttt cctcacagtc gaaccatttt gcatcgcaga tttcttcttc ctgtagctga
     5281 atttcaccgc tttcataatc cgctaaaaaa cctagcatta atgaattggg aaacgcccaa
     5341 ggttggcttc caaaataacg cacatttttc actttaatgc ccgtttcttc aaacacttca
     5401 cgatgcaccg cagtttctac cgcctcaccg gcttcgacaa aaccggctaa agtggtataa
     5461 attgtgcctt tatggcgtag atgattggct agtaggattt gtctgccttt tcgcaccgcc
     5521 acaataattg acgggctaat cgttgggtaa gctcgattgc cacacgcatt gcagtaaatt
     5581 gcaatttcat cgcttgccag tatggttttc tcgccacatt ttccgcaaaa ttggtgagtc
     5641 tgaaagaaat ggttaagcga aacagctcga tgcaacaaat gagacagttc gggtggtcgg
     5701 ttaatttggc ttcttaaata agcaaactct cgctgattat ccgattctaa cgccttcacc
     5761 aaataagccg gcgagccttg atattgcccg atggttaatt tctcacgtcc acttaagccc
     5821 agctcttccg cacttccgaa tggaatttcc ccagcctcca aggcaatatc aaaatcgctg
     5881 acgataatcc aatatccttt attcatcttt caatcctaat tgtgtaaaca acttacgttt
     5941 ttcattttca gatagcactt gaaactcacc acagcctaaa ttgcctaatc taaactggcc
     6001 tatcccaaca cgaattaacc gtaaagtcgg gaaaccgata tgtgcagtca ttcttctgac
     6061 ttggcgattt ttcccttcag aaataatcaa ttctatccag ctggtcggaa tggttttccg
     6121 ctcacgaatt tgcggggcga tattccaagc aaaatcgggc gttgctattg ctctgacttt
     6181 cgcgggcttg gtcaaaccat cttttaactc cacccctttt gctaatttgg caagatcttc
     6241 cggttgtgga acaccctcca cttgtaccca ataggttttc tgcttgtcaa atttcgggtg
     6301 agctaaacgg tgctggattt cgccattatt agtcaaaagc aacaatcctt cactgtctct
     6361 atctagccgc ccgaccgggt aaatattggg catcgtaata aaatctttta gcgtttttcg
     6421 cccctgttca tcggtaaatt gggttagtac atcataaggc ttattgagta acacaagggt
     6481 ggtttccgca aaggtaagcg gtcgtttttg cggatttttt tgcaaatttt tagcgaaatt
     6541 tgaccgcttg tttgtcattc ttttaaaggt tggttgtttc attttttcag gttcgcccac
     6601 gcaacagaaa gtaaaataat taagccaccg ataatcattt taagggttgg cacttcatta
     6661 aagcaaagcc acgcgatcac aatcgcatac accggctcga gggaaataat cattgaggca
     6721 gtacgggcgt tgatggtatc aaggcttgaa ataaacagcg tataggcaag ggttgtacat
     6781 aaaaaaccga tacagaaaat ccaaaaccaa tcttgggtgg aaacgcttgg aaattcagtg
     6841 atggagagag gcaacagaaa aagtgtagca aaaatatact gccaccagct tgcttgcaca
     6901 ccggaaattt tgctcatggt acggcgattc gctaccgcca aaataccata caccaaagca
     6961 gataacacgc cccacaataa accttgagtg gcttgattac caaaagtaaa ttcaggggta
     7021 actaaaatta aaccaaccgt gatggcaatt aatagcacca cttcacgaaa gcgtaatttt
     7081 tcacggaaga acaggctttc aaataacgcc acaaatgccg gaaagctggc aaagcctaag
     7141 gttgctaccg ccacaccacc tactttaacc gccacaaaaa aagtaaccca gtgggcagct
     7201 aataaagctg cagaaaatgc aagttgagcc atttgctgta agttgagctt tacaagcggt
     7261 tgttttttcc ataaaaaata caaagagatg atagcaaaag caatcatcac tcgcccaagc
     7321 acaatggttt cagccgagct ttgaattaat gctccgaaga tccccgaggc accaaataaa
     7381 accgctgtgc cgtgtacttt aagtagtgca agtgttcttt tctccactat ttgatcctat
     7441 tatgttgatc ttgctcgtcc ggcttgcgtt caaattctgc atcaaacgtg ttgctatctt
     7501 gcgcagatgt aacagaaaaa gacgaagttt gggcggtaaa atgcataaac accttattct
     7561 ttacgctatt aattacgaag gcttgaatcc attttcggct aaagggtaac acgcataaaa
     7621 tcgctaaaat atcacttaaa aagccgggaa taatcagcaa aatgccggct acaataaaca
     7681 tcaccgagtt gccgactgct tcagtcggta tcttgccttg gcttaaatct tgcttgatgg
     7741 aaaagagggt ataaacgccc cttaacttca caatccataa ccctaaaaat gaaatcacga
     7801 ccagtaacaa aatcgtgggt aacacgccaa tgatcgagcc aatattcacc agcagcgaaa
     7861 tttcgcaata gatataaaag aaaataccaa acagaatcgc taaaataggc atattatcct
     7921 cccaacgttg cggcagcgtt tgccgtcaga ttttctgccc cattggctcg catgacaata
     7981 ttgtcttcgg tacgaatccc gccaaaggct ttgaaagcct caattttctg ccagttaaag
     8041 gcagaagata aggcactgtt tttccaaggc ttaagtagca tctcaataaa ataaaaaccc
     8101 ggctcaatgg taagcaccat attttcctgt agctcacggg tacaacgcaa acttgggtaa
     8161 acctctggag gagctttatg gctgcctcgg gcattttgct gaaaaccgcc cacatcgtgc
     8221 acttgaatac ccaataaatg ccctagtccg tgtgggaaga acgtacggct aatcccttgt
     8281 tcaaaaattt gctcggctga aagatgaata aattgatgtt ccgctaataa ttgcgaaatc
     8341 atctgctgca ttcgggtgtg ataatgcagg tagttcaccc caatactcag ctcagcaata
     8401 atctgcaact tcaactgttc cattttcgcc accagctcgg caaattcaga accgctgtca
     8461 aaggcatagg tgcgggtgag atcggaggca taaccattta ccgttgtgcc ggcatcaatt
     8521 aaaaaactgt ggcgttttgc gtgggtgtca aaatctaacg ccgtataatg tagcaccgca
     8581 ccattttgat taatcgccac aatattgcca taaggaacat tgagatcaga ttgctgcgtc
     8641 gctttcaaat attcaaggtt gatttcaaat tcgcttttgc cggcaaaaaa tgcctctttt
     8701 gctacttgat gcccttttaa ggctgaaaat tgggcttggt aaatactttc aatttcaaac
     8761 tccgttttga tggagcgggc aaaattcagg ctattcagca ctttctgcgg attaatatgg
     8821 ctaaagccta actttttggc tagctcaaca tcttcaccga taaaggcaca agcggtcgga
     8881 ttttggataa aggttgcaat ttcattctct gctctcaaca aaacccactc aaattccgca
     8941 gcgaaaaagg cctccgttgg cacttttaga gtggaaaccc aataatcttc aggggcataa
     9001 aaatagattt tcggcttatt tttgccatct aaaaataacc agcaattttc agcttgggga
     9061 tatgggaaaa agtaattaaa ataagggtta attttaaacg gggcggtttg atcgtctaaa
     9121 aataaggttt ttgccttgcc ggcataaatc cataaaccgt ctaaaaaggc attttccagc
     9181 aagctttgca ctgtctgttg caaacgtgcg agatgcgtag agaatagatt tttcataagg
     9241 aataaaatga ctcaattaac tgtaaataaa gaattagata ccttggggct acgttgccca
     9301 gagccggtga tgctcacccg taaaacaatc cgtaatatgg aagagggaga aattttgcat
     9361 atcatcgccg atgacccggc cactacccgt gatattccga gtttctgcga atttatggat
     9421 caccaattaa ttcaaaaaga ggtggactcc accccatacc attactggat taaaaaaggc
     9481 ttggaataaa ccacaagcgg tcgattttag ccataaaatt gcaaatttat gcacaaaatc
     9541 gaccgcttgt tttaattaat gacggcgagg ttcgtcctca aaatcgtcat tttcatcatc
     9601 gaaaaattca ccgtcatcgc cgtactcatc ttcatcagca ttcggatctt caaagtaggt
     9661 tccccagccc tcatactccg caccggcttt ttcaattaat ggcagtaact ctttttgttg
     9721 tgcggtaatg agatccgcat tcaagtgaat ttcgctcaca atgtcgcata caaaaatcac
     9781 tttaccattt tcgtcttcca cttcttccgc ttcggaaatt tcatagccca gcttataggc
     9841 atcaactact aatttttcca atttatcaaa atcgtggtga gcaacgtggt gttcaataat
     9901 ataaagggct tcagggtctg aaccatcggc taataatgat gaaatggttt catcggtttc
     9961 tgtgcgtaat tcatcgagat tgtacatatt gaattcctta cttattctgt gattaatttt
    10021 ggtgcaaacc agctatctaa tttgttcgac agcttatcaa taccgatttt attcagtgcg
    10081 gaataagcct ctacttggat atcaccttgg aatggtaaaa tcgcttctct taccattttt
    10141 acctgcttag agcgtgccga ttggcttaac ttatccgctt tggtcaacag cagtaacacc
    10201 ggcaagttgg ctgacactgc ccattcaatc atctgttgat ctaaatcttt caacgggtgg
    10261 cgaatatcca ttaaaatcac cacaccgcct aaacattcac gcttttgtaa atactcgcct
    10321 aatgcttttt gccactggat tttcatctgt tcaggtactg ctgcatagcc atagccaggt
    10381 aaatccacta atttacaatt cgtttcaacc ttaaacaagt taatcaactg cgttcgcccc
    10441 ggtgttttgg aagttcgggc taaacttttt tggttagtta aagcgttcaa agcagtcgat
    10501 ttaccggcat ttgaacgccc ggcaaaagca atctccacac ctgtatcttc aggtaaatga
    10561 cgaatatccg gtgctgaagt taaaaaatgg gttttatgat agtttaattt cattttattc
    10621 tctaaattta aaagataagc cttgctcgcc atattgattc ggttcaggat taccggcaaa
    10681 tacaccccat tctaaaaaga gcaacattcc aataaatgcc ggcatcacct gtccaagcaa
    10741 tatctgcata attccttgtg aataaggagc tgcaagataa caaataatcg gcactaatgc
    10801 cattaacagg gcttttgccg aacgatttcg gtcgtgtaat cgtttaataa taatagcaga
    10861 caggctaaat cctgtaatta taagcggtag cacactcaat aaagacaatt cagccaaatt
    10921 tatccacata gcaaccataa acaggaaaag aaagtggatt ccaaatccaa tccaaaaacc
    10981 tcgtctattt agcctaccgt taaaactaaa aagtgcttta taccaactca ttttctaccc
    11041 taaagctaca tcaagtacca tcattactac aaagcctaac atcaggctta aagtcgcaat
    11101 atcagtattt cccgaacttt gcgattccgg aatcagttct tctacgacca caaaaatcat
    11161 cgctccggca gcaaaggcaa gagcataagg taaaatagcc gtcatcgaca gcacaaaaac
    11221 cgccccaatc accgccgcaa taggctcaac cactgctgac atagagccat accaaaatgc
    11281 tttcttccga ctatgccctt cgcctcgaat tggcaataca agtgacgagc cttcgggaat
    11341 gttttgtaac cctattccga ttgccaaacc gatagctccc ataatggaag catctacgcc
    11401 tgaaacttgg gttgccaaag caccgaaagc cacccctatg gctaatcctt ctggaatatt
    11461 atgaatggta atcgcaagaa aaagcaaagt agattttgat aagccttgtt taagttgatc
    11521 atttccttca gcttgctcaa tcggcttact caagtgcaaa tgcggcacaa catagtcaat
    11581 taatcgaata aaagctccac cggcaagaaa gccaatcgct gcaggcagcc aagctaaaga
    11641 gccataatcc gcctcggcat attctaaaga aggtgcaagc aaagaccaaa acgaggctgc
    11701 aatcattaca cctgcggcaa agcccatcat actgtctaat aattttcgat taaccgattt
    11761 aaaaaaatag acaaatgacg aaccgaaaat cgtacaaccc caagtaaata aacccgctaa
    11821 aaaagcttgc catattggag aaagtgaaag gaaatattca aacaagaaat agtaccagct
    11881 aaaataaata ttggctcatt ctatcaaaga ttcagggtta ttaatatagt gtagccaaag
    11941 gctcaacgaa gatttcactt gtaaaactta gcaagaaaat aaccgcttgc atttcccttt
    12001 cataaataca atgaaaatcc taacaagcgg tcattttccg tgagtttttt acctttacca
    12061 caacaacaaa aaaccgcctg tatctctaca ggcggctctt tcttggatta cttgtacttt
    12121 gtttatttgt acttattttg cttttgctta agttttcgct tttgtaactt ttagctttcg
    12181 cttaagctcg cttaaattaa aacccgacga tgctctactc tcacatggcg aatcaccaca
    12241 ctaccatcga cgttactgcg ttttacttct gagttcggta tggggtcagg taggaccaca
    12301 gcactcttgt cgtcgggaaa attcttttct atttttgaat ttctttaagt taacttccta
    12361 atctaactct tagttcactt taatagttag attaacttcc ttaacttcga ttgatttctt
    12421 ctctagtttc gttcttcttc tcaatacaaa aacaagccta aaaacatttg agcgttgtat
    12481 agttaagcct ctcgggcaat tagtactggt tagctcaatg tctcacaaca cttacacacc
    12541 cagcctatct acgtcgtagt ctccaacaac ccttacacac ttatagtgtg ggagaactca
    12601 tctcgaggca agtttcgtgc ttagatgctt tcagcactta tctcttccgc atgtagctac
    12661 ccagcaatgc ctctggcgag acaactggaa caccagtgat gcgtccactc cggtcctctc
    12721 gtactaggag cagcccctct caattctcca acgcccacgg cagataggga ccgaactgtc
    12781 tcacgacgtt ctaaacccag ctcgcgtacc actttaaatg gcgaacagcc atacccttgg
    12841 gacctacttc agccccagga tgtgatgagc cgacatcgag gtgccaaaca ccgccgtcga
    12901 tatgaactct tgggcggtat cagcctgtta tccccggagt accttttatc cgttgagcga
    12961 tggcccttcc attcagaacc accggatcac tatgacctgc tttcgcacct gctcgacttg
    13021 tctgtctcgc agttaagctt gcttatacca ttgcactaac ctcacgatgt ccgaccgtga
    13081 ttagcaaacc ttcgtgctcc tccgttactc tttgggagga gaccgcccca gtcaaactac
    13141 ccaccagaca ctgtccgaga ccgcgttccg caatcttcgt tagaacatca aacgttaaag
    13201 ggtggtattt caaggacgcc tccacaatca ctggcgtgac tgcttcaaag gctcccacct
    13261 atcctacaca tcaaaattca atgttcagtg tcaagctata gtaaaggttc acggggtctt
    13321 tccgtctagc cgcgggtaca ccgcatcttc acggcgattt caatttcact gagtctcggg
    13381 tggagacagc ctggccatca ttatgccatt cgtgcaggtc ggaacttacc cgacaaggaa
    13441 tttcgctacc ttaggaccgt tatagttacg gccgccgttt actggggctt cgatcaggag
    13501 cttctcttgc gataacacca tcaattaacc ttccagcacc gggcaggcat c
//
LOCUS       DANMBQ010000064        13224 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.064, whole genome shotgun sequence.
ACCESSION   DANMBQ010000064 DANMBQ010000000
VERSION     DANMBQ010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13224
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.064"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            222..866
                     /gene="rppH"
                     /locus_tag="PXE92_001537"
     CDS             222..866
                     /gene="rppH"
                     /locus_tag="PXE92_001537"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HDL5760778.1"
                     /translation="MIDFDGYRPNVGIVICNKHGQVLWAKRFGQNSWQFPQGGINEGE
                     NIEAAMYRELYEEVGLSKKDVRLLWASKYWLKYKLPKRLVRNEGSGPVCIGQKQRWFL
                     LQLIGDESLINLKTTKNPEFDGWRWVSFWYPVRQVVSFKRDVYRKAMKEFAQVLQNNI
                     QKATDDKTGEKPRIERGETSPHTYKKTSQDSAKAYKREARKPYRPWHQHNQKGK"
     gene            868..1656
                     /locus_tag="PXE92_001538"
     CDS             868..1656
                     /locus_tag="PXE92_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL5760779.1"
                     /translation="MTILLSCLFLGVFVGFLAGLFGIGGGLIIVPSLVFLLPMAGVPP
                     EYIMSTALGTSFSTIIITAFASAQRHHKLGNVDIQTSKYFIPALMVSVFLSGLVVSRL
                     DPQLMSRIFAVMVLYLAGKMIFSIKRAPKNKPLTVQTTIIGGSIIGALASMAGIAGGA
                     FIVPFLNDRGLEMKRAIGTSSFCGAFLGLSGTISFIVSGWGLEGMPDYSLGYVYLPAL
                     FGITATSFFTSKMGASAANALPVPMLKKAFAVLLVCIAINMFLK"
     gene            1664..2461
                     /gene="lgt"
                     /locus_tag="PXE92_001539"
     CDS             1664..2461
                     /gene="lgt"
                     /locus_tag="PXE92_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDL5760780.1"
                     /translation="MNEQFIQFPQISPIVFEIGPIALRWYGLMYLAGFAFAYWLGMRR
                     AKNSNGVWTTEQVDSLVYTCFWGVVLGGRIGDVFFYSFDRFLQDPLYLFRIWEGGMSF
                     HGGLIGVIVAMIWVSYRQKRNFWQTADFIAPLVPFGLGMGRIGNFINDELWGRVTDVP
                     WAVLFPSGGYLPRHPSQLYEAFLEGVVLLFILNWFIQKPRPAGAVSGLFLIGYGTFRF
                     IVEYFREIDHNVNTTADLITRGQLLSLPMIIGGILIMAWAYKVNKVK"
     gene            2548..3216
                     /locus_tag="PXE92_001540"
     CDS             2548..3216
                     /locus_tag="PXE92_001540"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HDL5760781.1"
                     /translation="MSKKYKVIGFDLDGTLINTLPDLTLVANSMFLEAGLPTVTQEKV
                     LTWIGKGADIFFQNAVAHTGRIFQADELVKMRVSFDKYYATYVCEESTLFPNVKETLE
                     ILKANDYPLVVITNKPTKLVEPVLSAFGIYHLFDETLGGQSLPKIKPHPDPMFFICEK
                     FGITPSELLFVGDSENDVIAAKAAGCDVVGLTYGYNYNVPIEQSNPTFVTSEFKDVLK
                     IVGL"
     gene            3286..3546
                     /locus_tag="PXE92_001541"
     CDS             3286..3546
                     /locus_tag="PXE92_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL5760782.1"
                     /translation="MPTIALRQVGGSVAMVIPPAFLEALKLSVGSKVDLSLNDNQLVI
                     NPARPKVKYSLEELLRQSDFEAARNEESQSWLSEPAIGKEIL"
     gene            3543..3875
                     /locus_tag="PXE92_001542"
     CDS             3543..3875
                     /locus_tag="PXE92_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HDL5760783.1"
                     /translation="MKRGDIYWLDLDPTLGHEQSGFRPVVIVSATAFNLASKLPVVVP
                     ITNGGAFAERLGFAVSLKDAGLKTTGIIRCDQPRTVDIAQRHGKFIEALPESLLDEIM
                     ARVSVIFE"
     gene            4002..5033
                     /gene="trpS"
                     /locus_tag="PXE92_001543"
     CDS             4002..5033
                     /gene="trpS"
                     /locus_tag="PXE92_001543"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDL5760784.1"
                     /translation="MSKPIVFSGVQPSGELTIGNYLGALRNWVKMQDDYDCVYCIVDQ
                     HAITVRQDPESLRKSTLDVLALYLACGIDPNKSTIFIQSHVPEHAQLAWVLNCYTYFG
                     EMGRMTQFKDKSARYEENVNVGLFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDI
                     ANRFNALYGKKDSEGNLIEPVFAVPEVFIAKSGARVMSLLEPTKKMSKSDDNRNNVIG
                     LLEDPKAVAKKIKRAMTDGDEPPVVRYDVQNKAGVSNLLDILSAITGKTIAELETEFE
                     GKMYGHLKTEVADKVSELLTNLQERYHHYRQDEALLEKIYREGAEKARAQAKATLDKV
                     YELVGFVRY"
     gene            complement(5097..5852)
                     /locus_tag="PXE92_001544"
     CDS             complement(5097..5852)
                     /locus_tag="PXE92_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDL5760785.1"
                     /translation="MKFIKKLSYSVFLATVITACATTESINQEAAQSYAQVKTQARQQ
                     NAIDNSSATAKRIHTVFHKMKPYAERANQTGVPFHWEITVLKSDELNAWAMPGGKMAF
                     YTGLVERLNLSNDEIAVVMGHEMAHALKEHGKSDRTVSAITSIVGAIADVAVTASTGV
                     STEGLLSTGVDLIATKPFSRSQETEADEVGLILMAESGYNPSAAPNVWVKMSKANGDS
                     GLSIFSTHPSNADRQENLARLVPEAMKIYNARK"
     gene            complement(5908..6435)
                     /gene="ppa"
                     /locus_tag="PXE92_001545"
     CDS             complement(5908..6435)
                     /gene="ppa"
                     /locus_tag="PXE92_001545"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HDL5760786.1"
                     /translation="MGLELVPAGKELPDDIYVVIEIPANSDPIKYEVDKETGALFVDR
                     FMATAMFYPANYGYVNNTLSSDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGG
                     DAKVVAVPHTKLSKEYDHIKDVGDLPALLKAQIQHFFESYKALEAGKWVKVEGWGDVN
                     EARQEILESFERAKK"
     gene            6652..6727
                     /locus_tag="PXE92_001546"
     tRNA            6652..6727
                     /locus_tag="PXE92_001546"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6685..6687,aa:Lys,seq:ttt)
     gene            6750..6825
                     /locus_tag="PXE92_001547"
     tRNA            6750..6825
                     /locus_tag="PXE92_001547"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6783..6785,aa:Lys,seq:ttt)
     gene            6847..6922
                     /locus_tag="PXE92_001548"
     tRNA            6847..6922
                     /locus_tag="PXE92_001548"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6880..6882,aa:Lys,seq:ttt)
     gene            7015..8049
                     /gene="mltG"
                     /locus_tag="PXE92_001549"
     CDS             7015..8049
                     /gene="mltG"
                     /locus_tag="PXE92_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HDL5760787.1"
                     /translation="MLKKILIALGLAGVIACGGLFYGYQKLTSLAEHPITVQPNQLFV
                     LEKGVSSQKLAALLEEQGIVTHDDADLIPYLMRLYPELSKFKAGAYSLAGLTTVKDLL
                     AHLSSGKEVQLNVQFIEGKTFKIWREQLAKADYLQHTLQGKSEKEIADLLGIPHEKIE
                     GWIAPDTYNYTPNSTDLALLKRAYQKQKTALEQAWKNRAENLPLATPYEMLILASIVE
                     KETGIATERPQVASVFINRLRNNMRLQTDPTVIYGMGDRYNGNIRRKDLEEATPYNTY
                     QIDGLPPTPIAMPSEASIKAVANPDNTPYLYFVADGTGGHKFSKTLNEHNKAVAEWIQ
                     IERKRKNEQK"
     gene            8060..8680
                     /locus_tag="PXE92_001550"
     CDS             8060..8680
                     /locus_tag="PXE92_001550"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDL5760788.1"
                     /translation="MRGKFIVIEGLEGAGKTTAHQVILKELEQAGINDVVMTREPGGT
                     PLAEKLRHLIKHETEEAINDKAELLMLYAARVQLVENVIKPALAEGKWVLGDRHDMSS
                     QAYQGGGRKLDRHLLETLKESVLGTFEPDLTIYLDLDPVIGLERARGRGELDRIEQQS
                     LDFFYRTRERYLELTQHNDKAVIINAEQPIEQVTADIQQVIRNWLK"
     gene            8680..9657
                     /locus_tag="PXE92_001551"
     CDS             8680..9657
                     /locus_tag="PXE92_001551"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDL5760789.1"
                     /translation="MYPWLESTYQQLTDSFLQGRGHHALLFKTDVGLGTDTLIYKVAE
                     WLLCSQKLRHQPCLECKSCLLMQSNNHPDFHILEPIEDKDIGIDQVRELIYKLQNFAQ
                     QGGNTVVYIRGVDRLTEASSNALLKTLEEPRENVYFLLEAPLQATVLATIQSRSQTWV
                     LYAPQASEVMAWLQTQFPAISTDDLEIALRLCHSRPLICKNFIENDRLQQRKTFLQTF
                     WRFYKSHDVFLLFQAFAQEKELILQQLEWLESFFSDALKAKMAISHGWLNPDLQNGIL
                     PFSQQLTTHGLLKGHQILQQTQRDLTEINAVNPELMLLDCLTKLVLVFE"
     gene            9788..10030
                     /locus_tag="PXE92_001552"
     CDS             9788..10030
                     /locus_tag="PXE92_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL5760790.1"
                     /translation="MARTTSVTLGEPLNDFVNEMVASGRYGSTSEVVRTALRMLEEKE
                     QYLAQLRQAIDDGDASGYATETIDEMMLRVKAELNV"
     gene            10023..10307
                     /locus_tag="PXE92_001553"
     CDS             10023..10307
                     /locus_tag="PXE92_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5760791.1"
                     /translation="MYKLSAQALRDQEKLFRYSISQFGVQQTESYFADLKHILNLLAD
                     FPTMGTSAEYIRGGLRMHTHQSHTIYYRIKADHIFIVRILHNQMNHKRYI"
     gene            10312..11100
                     /locus_tag="PXE92_001554"
     CDS             10312..11100
                     /locus_tag="PXE92_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchF/TatD family DNA exonuclease"
                     /protein_id="HDL5760792.1"
                     /translation="MKDLFIIDSHCHLDSLDYETRHKNVDEVIENAKARGVHHFISVC
                     TTVGRFEAMKNLTAHRNDVSLSCGVHPLNVEDEPFDYDKLFQFAQDPKVVAIGETGLD
                     YHYTPETKALQQSLFVQQIEIANKLNKPLIIHSRSARQDTMDMLEQNNAEKCGGVLHC
                     FTEDWAMAKRALDIGFYISISGIITFRNAEELREVVRKVPLDRLLVETDSPYLAPIPY
                     RGKPNQPAYVRETCEYVATLKGVSTEELARITTENVQHLFNIKL"
     gene            11110..11631
                     /locus_tag="PXE92_001555"
     CDS             11110..11631
                     /locus_tag="PXE92_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1523 family protein"
                     /protein_id="HDL5760793.1"
                     /translation="MRAILKYFLILVSLSFFIVLGGAVNYAMPSYEDTVVTGMEVRRM
                     DKDGIISKANPADGEVRDVYFLFTEDPETKKVMVYRNEDTGWGLPPYFKFGSADIQAK
                     AQAYANEKQRVQIKYYGWRINWLNEFRNIVSIKPLEEAETVSKPIMSYVLYAVLAFLF
                     FLSVQFIRGIFKD"
     gene            11706..12407
                     /gene="lpxH"
                     /locus_tag="PXE92_001556"
     CDS             11706..12407
                     /gene="lpxH"
                     /locus_tag="PXE92_001556"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HDL5760794.1"
                     /translation="MTYYFIADLHLNENQPEITHLFLQFMQEKALLAEAVYILGDLFD
                     FWIGDDEQSELISTVKQAIKTLTTSGTKCYFICGNRDFLIGKRFSEQTGMVILPDYHV
                     IDLFGTSTLLCHGDTLCTDDVKYQQFRKKVHQKWRQAIFLMFPLSWRIRIAEKIRSKS
                     KQEKRDKSAEIMDVNAEVTAQIVAKYNTTQLIHGHTHRQAIHQHNGFTRIVLGDWKEN
                     YASILSVTEQGAEFI"
     gene            12404..13194
                     /locus_tag="PXE92_001557"
                     /pseudo
     CDS             12404..13194
                     /locus_tag="PXE92_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
BASE COUNT         3921 a         2819 c         2761 g         3723 t
ORIGIN      
        1 ttatccagat cattgcttaa gaaaaagatc gcatttttag atctgattaa ttgctctgtt
       61 ttacaacgtt ccgcctgttt atcctcaact tataccactt atattcaata gttatccaca
      121 aagttattca caagcggtta tattttatgg tttttttgca aatcaaccca aagtatgaaa
      181 caattctccc attctagaat ttttatcaat taggtggtcg agtgatcgat ttcgatggct
      241 accgcccaaa tgttggaatc gttatctgta ataagcacgg gcaagttctg tgggcaaaac
      301 ggtttggtca aaactcttgg caatttccgc aaggtggaat taatgagggg gaaaacattg
      361 aagcagcaat gtaccgtgag ctttatgaag aggtcggctt aagtaaaaaa gatgtacgat
      421 tgctttgggc gtctaaatat tggctaaaat ataaactgcc aaaacgcttg gtacgtaatg
      481 aaggctctgg tcctgtctgt atcgggcaaa aacagcgttg gtttctactg caattaatcg
      541 gtgatgaaag cctgattaat ttgaaaacca cgaaaaatcc ggagtttgac ggctggcgtt
      601 gggtcagctt ttggtatcca gtccgccaag tggtctcttt taaacgagat gtttatcgca
      661 aagcgatgaa agagtttgca caggttttgc aaaacaatat tcaaaaagcg actgacgata
      721 aaaccggtga gaaaccacgc attgagcgtg gcgagacttc gccccatact tataaaaaaa
      781 cctctcagga ttctgccaaa gcctataaac gagaagctcg taagccttat cgtccttggc
      841 atcaacataa tcaaaaagga aaataagatg actattttat taagctgcct ttttttaggg
      901 gtgtttgtcg gctttttagc cggcttgttc ggcattggtg gtgggttaat catcgtgccg
      961 agtttggtct tcctactgcc catggcaggt gtaccgccgg aatatataat gtccaccgca
     1021 ctcggcacat cattttcaac cattattatt accgcctttg catcggcaca acgccatcat
     1081 aagttaggca atgtcgatat ccaaaccagt aaatatttta ttccagcgtt gatggtttcg
     1141 gtttttctat cgggcttggt ggtaagccgc ctcgatccgc aactgatgtc tagaattttt
     1201 gcggtaatgg tactttacct tgcaggtaaa atgatttttt caataaaaag agcaccgaaa
     1261 aataaaccac ttaccgttca aacgacgata atcggaggtt caatcatcgg tgcgttagcc
     1321 agtatggcag ggatcgcagg tggagccttt attgtaccat ttttaaacga tcgaggctta
     1381 gaaatgaaac gtgccatcgg cacttcctca ttttgcggag catttttagg tttatctggc
     1441 acaatcagct ttattgtaag tggctggggc ttagaaggaa tgcctgatta ttctctcggt
     1501 tatgtttatt taccggctct gtttggtatt acggcaactt catttttcac ctcaaaaatg
     1561 ggggcaagtg ccgccaacgc tctacctgtg ccgatgctga aaaaagcctt tgcggtgctt
     1621 ttggtctgta tcgccatcaa tatgttttta aaataaggac actatgaacg aacaatttat
     1681 ccaatttcca caaattagcc cgattgtgtt tgaaatcggt ccgattgccc tgcgttggta
     1741 tgggctaatg tatttagccg gctttgcctt tgcctactgg ctgggaatga gacgggcgaa
     1801 aaattccaat ggagtttgga caaccgagca agtggatagc ttagtctata cttgcttctg
     1861 gggcgtagta ttaggtgggc gtatcggcga tgtgttcttt tatagcttcg accgtttctt
     1921 acaagatccg ctctacctct ttcgcatttg ggaaggcgga atgtcctttc acggcggttt
     1981 aatcggcgtc attgtagcaa tgatttgggt ttcctaccgc caaaaacgca atttctggca
     2041 gacagcagat tttatcgcac cgctagtacc gttcgggcta ggtatggggc gtatcggcaa
     2101 tttcattaac gatgaacttt gggggcgtgt aaccgatgtg ccttgggcgg tgttatttcc
     2161 aagcggtggc tatcttcccc gccacccgtc acagctttat gaagcctttt tagagggtgt
     2221 ggtgttactc tttatcctca actggtttat tcaaaagcct cgcccggcag gtgcggtttc
     2281 agggttattt ttaatcggct acggcacatt ccgctttatt gtggaatact tccgagaaat
     2341 cgaccataac gtcaatacca ccgcagattt aatcactcgt gggcaactac tctctttacc
     2401 gatgattatc ggcggcatac tgattatggc gtgggcgtat aaagtaaaca aagtgaaata
     2461 aacgtagggg caagtcaata tttgccctca ttacaaaaat tgcaaaaaat ttgcagaaaa
     2521 cgaccgcttg tgtttgaagg atatactatg agtaaaaaat acaaagtcat cggtttcgac
     2581 ttagacggaa cgctaatcaa caccctcccc gatctcactc ttgtcgccaa ttcaatgttt
     2641 ctagaagccg gtttgccaac ggttacacaa gaaaaagtgc tgacttggat cggtaaaggg
     2701 gcagatattt tcttccaaaa tgcggttgct cacaccggca gaattttcca agccgatgag
     2761 ttggtgaaaa tgcgagtgag ctttgataaa tactacgcca cctatgtgtg cgaggaaagc
     2821 acccttttcc caaatgtgaa agaaacctta gaaatcctca aagcaaacga ctacccgctg
     2881 gtggtgatta ccaacaaacc gaccaaatta gtcgagccgg tgctttccgc tttcggcatt
     2941 tatcatttat tcgatgaaac ccttggtggg caatcgctcc ccaaaatcaa accgcaccct
     3001 gacccgatgt tttttatctg cgaaaaattc ggcattaccc catcagaatt actttttgtc
     3061 ggcgactcag aaaatgacgt gattgccgcc aaagccgccg gttgtgatgt ggttggacta
     3121 acttacggct ataactacaa tgtgccgatt gaacaatcta acccgacttt tgtgacatct
     3181 gaatttaaag atgtgttgaa aattgtgggg ttataaagaa aacatttgtt ttcttttgat
     3241 gtttgcttta gactttccga acctaaagat ttaaaggagt aaagtatgcc aacaatcgca
     3301 ttacgtcagg tcggtggctc ggttgcaatg gtgattccgc ctgctttttt agaggcactc
     3361 aagctctccg tcggtagcaa agtggatttg tctttaaacg acaaccaact cgtgattaat
     3421 cctgcccgcc caaaagtgaa atacagctta gaggaattat taagacaatc cgattttgag
     3481 gcagcaagga atgaagaaag ccaatcgtgg ttatccgagc cggcaatagg aaaagaaatt
     3541 ttatgaaacg tggcgatatt tactggctcg atcttgatcc aaccttagga cacgaacaat
     3601 caggcttccg ccccgttgta attgtttccg caactgcatt taatctagcc agtaaactgc
     3661 ctgtggttgt gccgattact aacggtggag cttttgctga aagactgggc tttgccgttt
     3721 cattaaaaga tgccggctta aaaacaacag ggattattcg atgcgatcaa cctcgcacag
     3781 tcgatattgc acaacgccat ggaaaattta tcgaagcctt acccgaaagc ctacttgatg
     3841 aaattatggc aagggtttca gtgatttttg agtaagatac aagcggtctg atttgctcta
     3901 ttttttgcaa aatcatcaat aaatctgacc gcttgtactt ttatcccttc ccaataaccg
     3961 ttaagataac ctatattttt caaatcaaac gagaagataa aatgagcaaa cctattgtat
     4021 ttagtggcgt gcagccctca ggtgaattga ctatcggtaa ctacttaggg gcgttacgca
     4081 actgggtgaa aatgcaagat gattatgact gtgtatattg cattgtcgat caacacgcca
     4141 ttaccgttcg tcaagatccg gagtcgctac gcaaatcaac tttagatgtg ttagccctgt
     4201 atttagcttg tggcattgat ccaaacaaaa gcactatttt tattcaatcc cacgtgccgg
     4261 aacacgccca attagcttgg gtgctgaact gttacaccta tttcggtgaa atggggcgta
     4321 tgacgcaatt taaagataaa tcagcacgct atgaagagaa tgtcaatgtg ggcttattta
     4381 cttatccggt attaatggcg gcagatattc tgctttacca agccaaccaa gtgccggtag
     4441 gcgatgacca aaaacaacat ttggaaatca cccgtgacat tgccaaccgt ttcaatgcct
     4501 tatacggcaa aaaagattcc gaaggcaacc tgatcgagcc tgtttttgca gtgccggaag
     4561 tctttattgc gaaatccggg gcaagagtga tgtcgctact tgagccgacc aaaaaaatgt
     4621 caaaatcgga cgataatcgt aacaatgtga ttggactatt ggaagatccg aaagcggtag
     4681 cgaagaaaat caaacgggca atgaccgatg gcgatgaacc gccagtagtg cgttatgacg
     4741 tacagaataa agccggtgtc tcgaatttat tggatattct ctccgccatt accggcaaaa
     4801 ccattgccga attagaaacc gaatttgaag gcaaaatgta tggtcatttg aaaacagaag
     4861 tagcagataa ggtttccgaa ctattaacca atctgcaaga acgttatcac cactaccgcc
     4921 aagatgaagc attattggaa aaaatctacc gtgaaggggc agaaaaagct cgagctcaag
     4981 ccaaagcaac gttagataag gtatatgaat tagtcggttt tgtgcgttac taacacttaa
     5041 tgaaaaatgc tcttgaggat tcaagagcat ttttgcaaaa aagaaccgat tgtcaattat
     5101 ttacgggcgt tataaatctt cattgcttcc ggcacaaggc gggctaagtt ttcttgacgg
     5161 tcagcatttg atgggtgagt tgagaaaatg gacaagcctg aatcgccatt ggctttactc
     5221 atttttaccc aaacattcgg cgctgctgat gggttgtagc ctgattctgc cattaaaatt
     5281 aacccaactt cgtccgcctc agtctcttgg ctgcgagaga atggcttggt ggcaatcaaa
     5341 tccacgccag tgctgagtaa accttcggtg cttacgcctg ttgaggcagt cacagccaca
     5401 tctgcaatag cacctacaat actggtaata gcgctaaccg tacggtctga tttaccgtgt
     5461 tctttcagtg cgtgagccat ctcgtgtccc attaccactg caatttcatc gttcgataaa
     5521 ttaagtcttt ccactaaccc cgtgtaaaac gccattttac cgcccggcat cgcccacgca
     5581 ttgagttcat ccgatttcaa tacggtaatt tcccaatgaa aaggtacacc agtctggttg
     5641 gctctttccg cataaggctt cattttatga aaaacagtgt gaatccgctt agcggtggca
     5701 gacgaattgt caatcgcatt ttgctgacga gcttgggttt tcacttgagc ataactttga
     5761 gccgcttctt ggttaatgct ttctgttgtg gcacaagcgg taatcactgt tgctaaaaaa
     5821 actgaataac ttaatttttt gatgaatttc attttatatc ccacaaaaaa tgccaaacaa
     5881 atttgcttgg cattcaaaaa taaataatta tttcttagca cgctcgaatg attctaagat
     5941 ttcttggcga gcttcgttta catcgcccca accttctact ttcacccatt tgcccgcttc
     6001 taatgcttta tagctttcga agaagtgctg gatttgtgct tttaataacg ccggtaagtc
     6061 acctacatct ttgatgtggt catactcttt acttaatttg gtgtgtggaa cagcaaccac
     6121 ttttgcatca ccgccggctt catcggtcat ttttaacaca ccgacaggac ggcaacgaat
     6181 caccgaaccc ggttgtaacg gatatggtgt tggcactaat acatcaaccg ggtcaccgtc
     6241 tgatgataag gtgttattca cataaccata gtttgccgga tagaacattg cggttgccat
     6301 aaagcgatcc acaaataatg ccccggtttc tttgtccact tcatatttga ttggatcaga
     6361 gtttgccgga atttcaatta caacataaat atcgtccggt aattctttac cggcaggaac
     6421 taattctaag cccattttgg tttccttcta taataggtga aataaacggc gtgattatag
     6481 cctattttca gaaaaagata aaagcccgtt tctcttttca ttttccgcca acaaatccgg
     6541 ctaatttttt gctaaattgc ttacaaaccg cacactcaac catttttcga taaaaaaaac
     6601 ttgccaaagt tttaaaaatc cgtaagatat gccctcgtta cgcaagatta tgggtcatta
     6661 gctcagccgg tagagcagcg gacttttaat ccgttggtcg aaggttcgaa tccttcatga
     6721 cccaccatta atcttcaaaa cacctctaag ggtcattagc tcagtcggta gagcagcgga
     6781 cttttaatcc gttggtcgaa ggttcgaatc cttcatgacc caccattaat ttcaaaactc
     6841 ctctgagggt cattagctca gtcggtagag cagcggactt ttaatccgtt ggtcgaaggt
     6901 tcgaatcctt catgacccac catttactca aatcccattt gcaaattttt ctgaaaaaac
     6961 aaccgcttta tagtagaatt cagtcaattt ttatcacttt tattttattc atcaatgcta
     7021 aaaaaaatcc ttattgcatt aggcttagcc ggcgttattg cttgcggtgg actgttttac
     7081 ggctaccaaa aactcacctc tttagccgaa cacccgatca cggttcagcc gaatcaactt
     7141 ttcgtattgg aaaaaggcgt ttccagccaa aaattagcgg ctctgttaga agagcaaggc
     7201 attgtcaccc acgatgacgc cgatcttatc ccttatttaa tgcgattata ccctgagtta
     7261 agcaaattca aggctggtgc ttattcactc gcaggcttaa cgacagtaaa agatttgctc
     7321 gctcatttaa gctccggcaa agaagtgcaa cttaacgtgc aatttattga gggcaaaact
     7381 tttaaaattt ggcgggaaca actagcgaaa gccgattatt tacagcacac gctacaaggc
     7441 aaatcggaaa aagaaatcgc tgacttactc ggcattccac acgaaaaaat cgaaggttgg
     7501 atagccccgg atacttacaa ctacacgccc aattccaccg atttagcctt gcttaaacgg
     7561 gcttatcaaa agcagaaaac ggcgttggaa caggcttgga aaaatagagc ggaaaatcta
     7621 ccgcttgcaa caccatacga aatgctgatt cttgcctcga ttgtggaaaa agagaccggc
     7681 attgcgaccg aacgcccaca agtggcatcg gtctttatta accgtttacg caacaatatg
     7741 cgactgcaaa ccgatccaac cgtcatttac ggaatgggcg atcgttataa cggcaatatc
     7801 cgccgcaaag atttagaaga ggcaacgcca tacaatactt accagattga cggcttaccg
     7861 ccaacgccga ttgccatgcc gagtgaagct tcgattaaag cggttgccaa cccggataat
     7921 acaccctacc tctattttgt ggcagacggc acgggcggtc ataaattcag caaaacactg
     7981 aatgagcata ataaagcggt ggcagaatgg attcaaattg aacgcaaacg caaaaatgaa
     8041 caaaaatagt gagaacaata tgcgtggaaa atttattgta attgaaggct tagagggcgc
     8101 aggcaaaacg actgctcacc aagtgattct caaagagttg gaacaagccg gcattaatga
     8161 cgtagtaatg acccgagaac ccggcggcac cccccttgcc gaaaagttac gccatttaat
     8221 taaacacgaa accgaagaag ccattaacga taaggctgag ctgctaatgc tctacgctgc
     8281 tcgtgttcaa ttagtcgaaa atgtgatcaa acctgccctt gccgaaggca aatgggttct
     8341 gggcgaccgc cacgatatgt cttcccaagc ctatcaaggc ggtggacgta agttggatcg
     8401 tcacttactc gaaaccttaa aagaatcggt actcggcaca ttcgagccag atttaacgat
     8461 ttatctcgat ctcgatccgg tgattggttt agaaagagcc agaggcagag gcgaattaga
     8521 ccgcatcgaa cagcaaagcc ttgacttctt ctaccgcaca cgagagcgtt atttagaatt
     8581 aacccaacac aacgataaag ccgtgatcat caatgccgaa caacccatcg aacaggtgac
     8641 tgcggatatt caacaagtaa ttagaaactg gctgaaataa tgtacccttg gctcgaaagc
     8701 acttatcaac aacttaccga ttcattttta cagggtcgag gtcatcacgc cttactgttc
     8761 aaaacagatg ttggtcttgg tacagacacc ttaatctaca aggtggctga atggttgctt
     8821 tgcagccaaa aactccgcca tcaaccttgt cttgaatgca aaagttgcct gcttatgcaa
     8881 agcaacaacc accccgattt ccacattctt gagccgattg aagacaaaga tattggtatc
     8941 gaccaagtgc gtgagttgat ttataaactc cagaatttcg cccaacaagg gggaaatacg
     9001 gtcgtttata ttcgaggagt tgatcgttta accgaggcaa gcagtaatgc cctgctcaaa
     9061 accttggaag agccacgtga aaacgtctat ttcttgctcg aagcaccgct tcaagcaaca
     9121 gttttagcta ccattcaaag ccgcagccaa acttgggtac tttacgcccc acaagcctca
     9181 gaagtaatgg cttggctaca aacacaattt ccggcaatct caaccgacga cttagagatt
     9241 gcactccgcc tttgccactc acgcccacta atttgcaaaa attttatcga aaatgaccgc
     9301 ttgcaacagc gaaaaacctt tttgcaaacc ttctggcgtt tctacaaaag ccacgatgtc
     9361 ttcttgttat tccaagcctt cgcccaagaa aaagagctga ttttacagca actcgaatgg
     9421 ctggaaagtt tctttagcga tgccctaaaa gctaaaatgg caatcagcca cggttggcta
     9481 aacccggatc tccaaaacgg cattctccct tttagccaac aactaacgac ccacggctta
     9541 cttaaagggc atcaaattct ccaacaaacc cagcgggatt taaccgaaat taacgccgtc
     9601 aatccggaat tgatgttgct agattgcctg acgaagttgg ttttggtgtt tgagtaaaag
     9661 ccctctctca tagaaggtag ctttcaatta gccgtaaaaa gaggcttcta gccctagaat
     9721 atagtttata acttgcaaaa ttatctatct ttgttattgt atgaataatt cacacaagga
     9781 gaatattatg gcaagaacaa ccagcgtgac tttaggcgaa cctttaaatg attttgtaaa
     9841 tgaaatggtg gcaagtgggc gttatggctc taccagtgaa gtagtgagaa ccgctttacg
     9901 aatgcttgag gaaaaagagc aatacttagc tcagttgcga caagccattg atgatggtga
     9961 tgctagtggt tatgcaaccg aaacgattga tgaaatgatg ttgagagtaa aggcggaact
    10021 taatgtataa actttctgct caagcactcc gagatcaaga gaaacttttt cgttacagta
    10081 tctctcaatt tggtgttcaa caaacagaat cttattttgc agatctaaag catattttga
    10141 atttattagc tgattttcca acaatgggaa cttctgcgga atatattcgt ggtggcttgc
    10201 gaatgcacac acatcaatct catacaattt attatcgaat aaaagcagat catatattta
    10261 ttgttcgcat cttacataac caaatgaatc ataaacgcta tatttagaaa aatgaaagac
    10321 ttatttatca tagactcaca ttgtcatcta gattctctag actacgaaac tcgtcacaaa
    10381 aacgtggacg aagtaattga aaatgccaaa gcccgagggg tgcatcattt tatctcggtt
    10441 tgcactacag ttgggcgttt tgaagcaatg aaaaacttaa ccgcccatcg taatgacgtt
    10501 tcactttctt gtggcgttca cccgttgaat gtggaagatg aaccttttga ttacgataaa
    10561 ttatttcagt tcgctcaaga tccgaaagtg gttgccattg gggaaactgg tttggattat
    10621 cactacacac cggaaaccaa agcgttgcaa caatcgcttt tcgttcaaca aattgaaatt
    10681 gcaaacaaac tcaataagcc actcattatc cattctcgtt cggcacgcca agatacgatg
    10741 gatatgttgg aacaaaataa tgccgaaaaa tgcggtgggg tgttgcattg ctttaccgaa
    10801 gattgggcaa tggcaaaacg ggctttagac atcggctttt atatctcaat ttcgggcatt
    10861 attactttcc gcaatgcaga agaactccga gaagtcgtgc gaaaagtgcc gttagatcgc
    10921 ttattggttg aaacagattc cccttatctt gccccgattc cttatcgtgg taagccgaac
    10981 cagccggcgt atgtgcggga aacttgcgaa tatgtggcga cattaaaagg cgtttcaact
    11041 gaagaattag ctcgcattac aaccgaaaat gtgcaacact tattcaacat taaattataa
    11101 ggaactaata tgagagcaat acttaagtat tttctgattc ttgtctcact atcatttttt
    11161 attgtattag gcggtgcagt taattatgca atgccaagtt atgaagatac cgtagtaaca
    11221 ggtatggaag tacgccgaat ggataaagat ggtattatca gcaaagcgaa tcctgctgat
    11281 ggcgaggtgc gcgatgttta tttcttattc acggaagatc ctgaaaccaa aaaggtaatg
    11341 gtttatcgta atgaagatac cggctggggg ttgcctcctt atttcaaatt cggatctgcc
    11401 gacattcaag ccaaagctca agcctacgct aacgaaaaac aacgtgtgca aattaaatat
    11461 tacggctggc gaatcaattg gctaaatgaa tttagaaata ttgtttcaat caagccatta
    11521 gaagaagcag aaacagtcag caaaccaatt atgagctatg tactttatgc cgtattggcg
    11581 ttcttgttct tcctctcagt acaatttatt cgtggcattt ttaaagatta atgccgatta
    11641 acctttgaca aacggttcga ttttgtaaaa aattgaaccg ttttcttttt tatcaacaat
    11701 atcaaatgac gtactatttt attgccgatc tccacttaaa tgaaaatcag cctgaaatta
    11761 cccacctctt tttgcaattt atgcaagaaa aagcactact tgcagaagcg gtttatatct
    11821 taggtgatct gtttgatttc tggattggcg atgatgagca gtctgaactc atttcaaccg
    11881 ttaaacaggc aatcaaaacc ctcactacaa gcggtacaaa atgctatttt atttgcggaa
    11941 atcgtgattt tttaattggc aaacgattca gcgaacaaac gggtatggtt attttgcctg
    12001 attatcacgt tatagattta ttcggcacat ctaccttgct ttgccacggc gatacgcttt
    12061 gtactgatga tgtgaaatat caacaatttc gtaaaaaagt ccaccaaaaa tggcgacaag
    12121 ctatcttttt gatgtttccg ctttcttggc gaattcgtat tgcggagaaa attcgatcca
    12181 aaagcaaaca agaaaagcgt gataaatccg ctgaaattat ggacgtaaac gctgaagtta
    12241 ccgctcaaat tgtcgcaaaa tacaatacaa ctcaacttat acacgggcat acgcatcgac
    12301 aagcaatcca tcagcataat ggatttaccc gcattgtatt aggcgactgg aaagaaaatt
    12361 acgcctctat tttaagcgta accgagcaag gagctgaatt tatatgatta atgtgattat
    12421 tccttgctat aacgccgaaa acacccttgt tcgtgcagtg caaagtgtat taaatcagtc
    12481 tggattaaat ctattgtggc ttattgatga tgcttcaacg gataatacgc ttgccttagc
    12541 taaacattta caagcccaag tgcctgataa aattagagtg gaacaaatgc ctcaaaatgg
    12601 cggtgttgcc aaagcacgca actggggagc attacaaagt gaaacagatt taattgcctt
    12661 tttagatgct gatgatgctt atgaaaacgg ggcattgcaa gttgctgaaa agatttttga
    12721 gtttaaaccg gaaaccggct tggttcggtt agcattaaaa ccggtaactt agatcaacgt
    12781 tacagctctc accctaattt tgagttagct tggcaatata tgcaaatgac tggtgcaggc
    12841 aacactgtat ttcggcgtag tttcttcctc gcttgtggcg gctttccaca acatcagctc
    12901 ttccaagaat taggtggaga agatggtgct ttaggcatag ccactacaca aattagctct
    12961 gtagctactg catttaatga tgtcggtgtt ttacattact gccgagaggg tatgcacgca
    13021 gaaagattat taaatgcgat tttattcaac gaaaaagatc ccaatgttac tgaagaaaaa
    13081 gttaaacaag ccaacctaat taccgaaaat attgttaata atattagaaa tctacaagac
    13141 tgtcttaata gtaaagggat tggtattaag ccttatacgc ttgaatggag ctaaaaaagc
    13201 atttgcagat tttccctaaa aaaa
//
LOCUS       DANMBQ010000065        13173 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.065, whole genome shotgun sequence.
ACCESSION   DANMBQ010000065 DANMBQ010000000
VERSION     DANMBQ010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13173
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.065"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            174..1472
                     /gene="tig"
                     /locus_tag="PXE92_001558"
     CDS             174..1472
                     /gene="tig"
                     /locus_tag="PXE92_001558"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDL5760795.1"
                     /translation="MSFSIETLEGLKRRVTINVPADKIEAAYKEQLKGYAKNARVDGF
                     RKGKVPHSIIEQRFGIAARQDVLSDEMQRAFFEAVIAEKINLAGRPTFTPNNYQPGQD
                     FSFTAEFEVFPEVELKGLENIEVEKPVVEIADADLDKMVDVLRKQQATWSESQEAAKA
                     ESRVTIDFVGSVDGEEFEGGKASDFVLFMGQGRMIPGFEDGIVGRKAGEQFDIDVTFP
                     EEYHAENLKGKAAKFAITLKKVEEMVLPELTEEFVKKFGNAKSVEELRAEIKKNMQRE
                     LKNAVTSRVKTQVINGLIAQNDVEVPAAAVEEEINVLRQQAVQRFGGKPEMAAQLPAE
                     LFEAEAKRRVQVGLLLSSIIGSNELKVDEKRVEEMIADIASAYEQPAEVVAHYAKNRQ
                     LTENIRNVVLEEQAVDAVLAKAKVTEKTMSFDEVMSQQAQ"
     gene            1588..2040
                     /locus_tag="PXE92_001559"
     CDS             1588..2040
                     /locus_tag="PXE92_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL5760796.1"
                     /translation="MEQLTFAQQLEQFFANHTLMVFAWVALLIAVIFSFYKSATQKYK
                     IVDNAQATQLINKEEAVVVDLRSDEEFRAGHIIDSIHVLPSDIKAAKINQIDKYKARP
                     VIVVDTNDFTSGGVAADLAKQGFSRVYVLKEGIGGWRAASLPTIKKHK"
     gene            2061..2561
                     /gene="secB"
                     /locus_tag="PXE92_001560"
     CDS             2061..2561
                     /gene="secB"
                     /locus_tag="PXE92_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HDL5760797.1"
                     /translation="MSEENQVASTEEATQTPFELQIQRIYVKDVSFEAPNLPTIFQQE
                     WKPQLGFELDTETKEIGEDLYEVTLHITVQTTLEDSNDVAFICEVKQAGVFTIKGLEG
                     IQLAHCLASQCPNVLYPYARELISSLVNRGTFPALNLSPVNFDALFMDYLQRQEESAE
                     EPALAN"
     gene            2668..3678
                     /gene="gpsA"
                     /locus_tag="PXE92_001561"
     CDS             2668..3678
                     /gene="gpsA"
                     /locus_tag="PXE92_001561"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDL5760798.1"
                     /translation="MSEIYSAPITVLGAGSYGTALAIALSRNGHKTYLWGHNPDKMAV
                     LASERMNQDFLPDIVFPEALEIVADLATAVQKSKDLLIVVPSHVFSEVLAQIKPFLSQ
                     DHRIMWATKGLERDTGRLLQTVAKEILGEIYPLAVLSGPTFAKELAAGLPTAISLAST
                     DPVFADQMQKRSHCSKAFRVYLNNDIIGVQLGGAIKNVIAIGAGISDGMGFGANARTA
                     LITRGLAEISRLGVSLGADPKTFTGMAGLGDLVLTCTDNQSRNRRFGLALGQGKSAEV
                     AIAEIGQVVEGFYNTKEAYLLAQTQGVEMPIVEQIYQMLFCGKQASDVVKTLLGRERK
                     GE"
     gene            3694..4509
                     /gene="cysE"
                     /locus_tag="PXE92_001562"
     CDS             3694..4509
                     /gene="cysE"
                     /locus_tag="PXE92_001562"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDL5760799.1"
                     /translation="MQQSEINQIWQAIRDEAKELANCEPMLASFFHATILKHHNLGDA
                     LSYILANKLENPIMPAIALKEIIEEAYRAEPQIIASAACDINAVRTRDPAVDKWSTPL
                     LYLKGFHALQSYRVTHYLWNQGRKALAVYLQNEISVAFDVDIHPAAKVGCGIMFDHAT
                     GIVVGETSVIENDVSILQGVTLGGTGKENGDRHPKIREGVMIGAGAKILGNIEIGRYS
                     KIGANSVVLQPVPDHATAAGVPARIIGKSSEQKPAFDMNQYFEDEQGLFGDGI"
     gene            4558..5169
                     /locus_tag="PXE92_001563"
     CDS             4558..5169
                     /locus_tag="PXE92_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5760800.1"
                     /translation="MQLTFNDFQNYYNGKGDLTMFSFYGKKTWENGIYVGIDGSIGRA
                     NNKLSHQSQTIKLARNVYSLGLTVGKTLEVASFNLQPSFGMRYHHLTSANAQLENTKF
                     ETDRVDLLAIQAGLALNKTFIFNELKVKPELGSYFVDASHGTLKTKLNEFSLNQNIGR
                     YFKQEVGITLHYKGVSSSVHAGFTKGNTLQEQKFISLKVGYEW"
     gene            complement(5709..6401)
                     /locus_tag="PXE92_001564"
     CDS             complement(5709..6401)
                     /locus_tag="PXE92_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL5760801.1"
                     /translation="MTELTPKQEAFCFAYIETGNASEAYRQAYETEDMKSETVHRKAK
                     ELMDNGKITARIEELKAEHAERHKLTVDDLLKELEEARILAREKENPNAMTQATMGKA
                     KLLGLDKQVTDPCFDGETGKGDMILSVNCSSIKDGKALDETCILKAGTHEFITRDSFI
                     FYRHIRIDSLDEIKANIEAGYFIQKALINDEAYQQILKGVLSSKSVTPRYKRFLKNAI
                     RQSACPDILAEP"
     gene            complement(6398..6823)
                     /locus_tag="PXE92_001565"
     CDS             complement(6398..6823)
                     /locus_tag="PXE92_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760802.1"
                     /translation="MKHELNLAGITALMNEPIKATLSFLDFPHIRIERLHHDNGRPFF
                     IGVLSLDLEDHINIEMAGATGFLEALAIIAYHQQLTATPLLVNDDLLSEINKLPHPQR
                     TNPFIDRHGNEITREQMSKEYREKIDYAFAEKRMAEGKE"
     gene            complement(6830..6982)
                     /locus_tag="PXE92_001566"
     CDS             complement(6830..6982)
                     /locus_tag="PXE92_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760803.1"
                     /translation="MPELLIVLGNRIAKLEQQHNAMPSETDSITLGILRKQLSQLLKV
                     AERIKE"
     gene            complement(7143..7829)
                     /locus_tag="PXE92_001567"
     CDS             complement(7143..7829)
                     /locus_tag="PXE92_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760804.1"
                     /translation="MADHSQFISRLENRIEPKISFQELIQELSNYTNKPFSHIADKLK
                     SLIFSFQQNGIYTNAFVNCTLFEDGESYAIEPKTLHFKDAFDQPKGVLSDVIAQNSID
                     VEHLNAYYVTAREITQLIKTQSPTLLDKLTTKQTQSEISQIQNDYISVYDFIEWASKH
                     YSSLSETANDLNRLLKDKNIQLYRQYGGISPSIDKDNTNLKAAFDFVAINNGYEKQSS
                     SFNFDDDIPF"
     gene            complement(8224..8547)
                     /locus_tag="PXE92_001568"
     CDS             complement(8224..8547)
                     /locus_tag="PXE92_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL5760805.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNDVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
     gene            complement(8660..8878)
                     /locus_tag="PXE92_001569"
     CDS             complement(8660..8878)
                     /locus_tag="PXE92_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module killer protein"
                     /protein_id="HDL5760806.1"
                     /translation="MMREQTTNQIIITDNFSKWLENLKNPIAKATVARRIKNAINGNF
                     GDHKSLAGTGGLYEMRIATGAGYRIYYA"
     gene            complement(9153..10379)
                     /locus_tag="PXE92_001570"
     CDS             complement(9153..10379)
                     /locus_tag="PXE92_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5760807.1"
                     /translation="MARKITPLNDTQIRKAKPEDSPLRDGNGLLLVITSNSKLWRFRY
                     ERPFTKKRNDLSIGAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISN
                     TYENVAWAWLEHRKTKKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQ
                     YQDEGKLEKLKRAIQKHNEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDL
                     GEFLYTLQNAQIHLQTRYLILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRG
                     IEHKITLSRQAIALLREIKKLSGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLV
                     AHGLRAIASTYLNEKGYNSDLIEVALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFV
                     EECSQGSLPQYHLKIA"
     gene            complement(10654..11020)
                     /gene="ssrA"
                     /locus_tag="PXE92_001571"
     tmRNA           complement(10654..11020)
                     /gene="ssrA"
                     /locus_tag="PXE92_001571"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            11186..12145
                     /gene="rpoH"
                     /locus_tag="PXE92_001572"
     CDS             11186..12145
                     /gene="rpoH"
                     /locus_tag="PXE92_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HDL5760808.1"
                     /translation="MKKFNENEIEDAEIIDAEPIDVDEIDEEETSVEAMHPALVSGSM
                     PVPQGNLDSYIRMANQYPILTAEQEKELAERYYYDEDVEAAKQLILSHMRFVIHIARG
                     YLGYGLPLADLIQEGNIGLMKAVKRFDPNVGVRLVSFAVHWVKAEIHEYVLKNWRIVK
                     VATTKAQRKLFFNLRKNKNRLAWFNEEEIKKVADDLGVSVEEVREMESRMTGQDLGFD
                     LPAGDDDEDSYAPSMYIEDSSSNFADDLEDEQHNGQATAQLAYALATLDERSQDIIKT
                     RWLDDNKATLQDLADKYNISAERVRQLENAALKKIKEAISLDG"
     gene            12311..12604
                     /locus_tag="PXE92_001573"
     CDS             12311..12604
                     /locus_tag="PXE92_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3144 domain-containing protein"
                     /protein_id="HDL5760809.1"
                     /translation="MTQLSTSVYQRADGFINVANAHLKNIAPNQVSNAMLFGCARFNA
                     YVAASKAEYKQQLADSREEVIQYFVEQYKEMLTANLDEYIQNFERYIEGKKAD"
     gene            complement(12622..12924)
                     /locus_tag="PXE92_001574"
     CDS             complement(12622..12924)
                     /locus_tag="PXE92_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL5760810.1"
                     /translation="MNTYNNTLNNKNLEKKQLLMAIQAIPASQDFIWDGKDDDERPVT
                     PSEFSIAMKKRGRPAGSKKELVSLRLDKSVLEAFRASGKGWQSRINQVLSDFVKQV"
     gene            complement(12896..>13173)
                     /locus_tag="PXE92_001575"
     CDS             complement(12896..>13173)
                     /locus_tag="PXE92_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5760811.1"
                     /translation="WDETKRKINLAKHGLDFADADEVLSSPYRFDVEVIRNNEFRIQS
                     FAYSFGRLLVLSLAYTEREDYIRVISFRRASKAEREAYYEYLQQYFE"
BASE COUNT         3813 a         2457 c         2816 g         4087 t
ORIGIN      
        1 cggtgaaaaa agaccgcttg taggcaagcc cattgacaag cagtcagatt ttagggattt
       61 tttacaaaac tgtttatttg cgaatgagtt tcttctcgac agtttcttga tagaacgcta
      121 caataaccgt ctatttgtat atctttttta tatccctaaa ccgaggttta agaatgtcat
      181 tttcaattga aacattagaa ggcttaaaac gccgtgttac tattaacgta ccagctgata
      241 aaatcgaagc agcatacaaa gaacaattaa aaggctatgc gaaaaatgct cgtgtagatg
      301 gcttccgtaa aggtaaagtg ccacactcaa ttatcgaaca acgttttggt attgcagccc
      361 gtcaagatgt gttatctgat gaaatgcaac gtgcattctt tgaagccgtc attgctgaaa
      421 aaatcaactt ggcaggtcgc cctactttca cgccaaacaa ctaccaacca ggtcaagact
      481 tcagctttac tgcggaattt gaagtattcc cagaagtgga attaaaaggt ttagagaata
      541 tcgaagtaga aaaaccggtt gttgaaatcg cagacgctga tttagacaaa atggtagatg
      601 tattacgcaa acaacaagcg acttggtcag aaagccaaga ggctgcaaaa gccgaatctc
      661 gtgtaactat tgatttcgtt ggttcagtag atggtgaaga attcgaaggc ggtaaagcat
      721 cagacttcgt gttatttatg gggcaaggtc gtatgatccc ggggtttgaa gacggaatcg
      781 taggtcgtaa agcgggtgag caattcgaca ttgatgtgac tttcccagaa gaataccacg
      841 ctgaaaactt aaaaggcaaa gcagcgaaat ttgcaattac cttgaaaaaa gtagaagaga
      901 tggtattacc ggaattaacc gaagagtttg tgaaaaaatt cggtaatgca aaatcagtgg
      961 aagaattacg cgcagaaatt aagaaaaata tgcaacgtga acttaaaaat gcagtcactt
     1021 cacgtgtgaa aactcaagta atcaacggct taattgctca aaatgatgtt gaagtgccgg
     1081 ctgctgcggt tgaagaagaa atcaacgtat tacgccaaca agcggtgcaa cgttttggtg
     1141 gtaagcctga aatggcagct caattaccgg ctgaattatt tgaagcagaa gctaaacgcc
     1201 gtgttcaagt gggcttatta ttatcttcaa tcatcggttc taacgaatta aaagtagatg
     1261 aaaaacgtgt tgaagagatg atcgcagata tcgcttcagc ttacgaacaa ccggctgaag
     1321 tggttgctca ctatgcgaaa aaccgtcaat taactgaaaa tatccgcaat gtggtattag
     1381 aagagcaagc ggttgatgca gtgctagcga aagcgaaagt gactgaaaaa acaatgtcat
     1441 ttgacgaagt aatgtcacaa caagctcaat aatttcctta taaggtgggc ttttgctcac
     1501 cttttattac ttttacaagc ggttaaattt agtgataaat ttgcatcaaa acgaccgctt
     1561 attttttgat gttaaggaaa ttgaattatg gaacaactaa cttttgctca acaattagag
     1621 caattttttg ccaatcatac cttgatggtg tttgcttggg ttgcattatt gattgcggta
     1681 atttttagct tttataaaag tgcaacgcaa aaatataaaa ttgtcgataa cgcacaggct
     1741 acacagctga ttaataaaga agaggcagta gtggttgatt tacgttctga tgaagagttc
     1801 cgtgccggtc atattattga tagcattcac gtgttaccgt cagacattaa agcagctaaa
     1861 atcaatcaga ttgataaata caaagctcgc ccggtaattg tagtagacac taatgacttc
     1921 acttcaggtg gtgttgcggc agatcttgct aaacaaggct ttagcagagt ttatgtatta
     1981 aaagaaggga ttggcggctg gcgtgcagca agcctaccaa ctattaaaaa acataaataa
     2041 tctattatta aggaaatttt atgtcagaag aaaatcaagt tgcatcaaca gaagaagcta
     2101 cacaaacccc ttttgagctt caaattcaac gcatttatgt aaaagatgtt tcatttgaag
     2161 caccaaattt accgactatt ttccaacaag agtggaaacc acaattaggc tttgagttag
     2221 atactgaaac caaagaaatt ggtgaagatt tatacgaagt taccttacac attacggtgc
     2281 aaactacgtt agaagacagc aatgatgtcg ctttcatttg tgaagtaaaa caagcaggtg
     2341 tgtttactat taaaggttta gaaggcattc aacttgctca ctgcttagct tcacaatgtc
     2401 cgaatgtgct ttatccttat gctcgtgagc taatctcaag ccttgtgaat cgtggtacat
     2461 tcccggcatt aaatctctca ccggtaaact ttgatgcgtt atttatggat tatctccaac
     2521 gccaagaaga aagtgcagaa gagccggctt tagcgaacta agcattttag atagaaaata
     2581 ggtatgcaag gcatacctat ttttttacaa gcggttattt tttctactat tttttgcaat
     2641 tttctaaata agccgaacag aggaaatatg agtgaaatct attctgcccc aatcacggta
     2701 ttaggtgcag gttcttatgg aacagcttta gccattgccc tttctcgaaa tggtcacaaa
     2761 acctatttat gggggcataa tcccgacaaa atggccgttt tggcatcaga gcgaatgaac
     2821 caagattttc tgcctgatat tgtattcccg gaagccttag aaattgtcgc agatcttgct
     2881 acagcggtac aaaaatcgaa agatctgctg attgtggtgc caagtcatgt attctctgaa
     2941 gtattggctc aaatcaagcc ttttttgtcc caagatcacc gtataatgtg ggcaaccaaa
     3001 gggctggagc gagataccgg gcgtttgttg caaacggtag ctaaggaaat tttgggggaa
     3061 atttacccgc ttgcggtgct ttccggtccg acttttgcca aagaactggc ggcaggcttg
     3121 ccaacagcga tttcgcttgc ctcaactgat cctgtttttg ccgatcaaat gcaaaaacgg
     3181 agtcactgtt ccaaagcgtt ccgagtttac ctcaacaatg atattatcgg tgtgcaactc
     3241 ggtggggcta ttaaaaatgt gattgcaatt ggtgccggta tttcagacgg aatgggattc
     3301 ggggcgaatg ctcgtaccgc cttgattact cgagggctgg cggagattag ccgtttgggt
     3361 gtttcgctcg gggctgatcc gaaaaccttt accggaatgg cggggcttgg agatttagtg
     3421 ctgacgtgta ccgataacca atcccgaaac cgccgatttg gtttggcgtt agggcaagga
     3481 aaatcggcag aagtcgcgat agcggaaatc ggtcaagtgg tagaaggatt ttataatacc
     3541 aaagaagcct atttgctcgc tcaaacacag ggcgttgaaa tgccgattgt agaacaaatt
     3601 taccaaatgt tattttgtgg caaacaggct tcggatgtgg tgaaaacctt gttggggcgt
     3661 gaacgaaaag gcgaataaag aaaggagaat aaaatgcagc agagtgaaat taatcagatt
     3721 tggcaagcaa ttcgagatga agccaaagag ctggcgaatt gtgaacctat gttagcaagt
     3781 tttttccacg ctaccatttt aaaacaccat aatctaggcg atgcgttaag ttatattttg
     3841 gcgaataagt tagaaaaccc gattatgccg gcaatcgcct taaaagaaat tattgaggaa
     3901 gcttatcgag cagagccaca aattattgct agtgcagctt gtgatattaa tgcggtcaga
     3961 actagagatc ctgcggtgga caaatggagt acacctctgc tgtacttaaa aggcttccac
     4021 gctttacaaa gctatcgggt gacgcattat ctttggaatc aaggcaggaa agcattagcg
     4081 gtttatttac aaaatgaaat ttctgttgcc tttgatgtgg atattcatcc tgcggcaaag
     4141 gtcggttgcg gaattatgtt tgaccacgcc accggtattg tggtgggtga aacctctgtg
     4201 atcgaaaatg atgtctcgat tttacaaggt gtaacactag gcggtacagg gaaagaaaat
     4261 ggcgaccgcc acccgaaaat ccgtgaaggc gtgatgattg gagccggtgc aaaaattctc
     4321 ggtaatattg aaatcggacg ctattctaaa atcggggcaa attcagtggt gctacaacct
     4381 gtgcctgatc acgccacagc agcaggtgta ccggctcgca ttatcggcaa atcctctgaa
     4441 caaaaaccgg cttttgatat gaatcaatac tttgaagatg agcaaggttt gtttggtgat
     4501 gggatttagg taagagttat tcctttaatt tatgatttag acattgctaa gtacaagttg
     4561 caattaacct ttaatgattt tcagaactac tataatggta aaggggattt aactatgttt
     4621 tctttttatg gtaagaaaac atgggaaaat ggcatttatg tagggattga tggtagcatt
     4681 gggcgtgcga ataacaaatt aagccatcaa agccagacga taaaactagc cagaaatgta
     4741 tattctttag gattaacggt aggtaaaacg ttggaagttg caagttttaa cctacaaccg
     4801 tcatttggta tgcgctatca tcatttaaca tctgcaaatg cccaattaga gaacacaaaa
     4861 tttgagactg atagggtaga tcttttggcc attcaagctg gtttagcatt aaataaaact
     4921 tttatattta atgaattaaa ggtaaaacct gaattaggaa gctattttgt tgatgcaagc
     4981 cacggaacac ttaaaactaa gttaaatgaa ttttccttaa atcaaaatat aggccgttat
     5041 tttaagcaag aagtagggat tacactccac tataaagggg tatcaagttc ggtacatgct
     5101 ggctttacaa aaggaaatac attacaagaa caaaaattca tttcactcaa agttggatat
     5161 gagtggtaag ctttatgtaa cctgaagcta cacttgaatc ggttcaaaca taatgttact
     5221 aaaaaagcct tgaaacattg attttcaagg ctttttaggt atcggttgaa ccgtatagga
     5281 ttataatttg gtgctggggt catctgaatt gtatcacttc aagcattgat aaataagggt
     5341 tttggttaat tcaaatttta tttgtactcc taaatatact cctaaaattc aaagtgcctt
     5401 attgcttagg ctattttgtg tacaattatt cggatcgtgt atagggaaat ttagttcgta
     5461 gttttctata gtagtttaag tttataaaga aaaaatttaa aactttttga aattttaccc
     5521 actttaccca ctgatttgtt ggaagccttg atatataagg ctttatagcc agtgggaagc
     5581 aagtgggtta cagtgggtta agtgggtaac tttgattttt acccactgtt agccactttt
     5641 agaggggaaa tattagcggt tttggtagtg gttaaagggc aaaaaaggcc ttaattctca
     5701 tcaacggctt aaggttcggc tagaatatca gggcaagcac tttggcggat tgcatttttt
     5761 aggaagcgtt tatatctagg cgttactgat tttgacgata gtacgccttt tagtatttgt
     5821 tgataggctt catcattaat tagggctttt tgaatgaaat aaccggcttc tatatttgcc
     5881 ttaatctcat ctaacgaatc gattcttata tggcggtaga aaataaagct gtcccgtgtg
     5941 ataaattcgt gtgttcctgc ctttaaaata caagtttcat caagtgcttt cccgtcttta
     6001 atgcttgagc agtttacact taaaatcata tctcctttac cggtttcacc atcaaagcac
     6061 ggatcggtaa cctgcttatc cagccctagc aacttcgctt tgcccattgt ggcttgagtc
     6121 attgcgttag ggttttcttt ctctctcgcc agtatacgag cctcttccag ctcctttaaa
     6181 aggtcatcaa cggttaattt atggcgttct gcgtgttcgg ctttcagttc ctcaatcctt
     6241 gccgtaatct tgccgttatc cattagctct ttagcttttc ggtggacggt ttcggacttc
     6301 atatcttcgg tttcataggc ttggcggtag gcttcgctag cattgccggt ttcaatataa
     6361 gcaaagcaaa aagcctcttg ttttggtgtg agttcggtca ttctttcccc tccgccattc
     6421 gcttttcagc aaaggcataa tcgatttttt ctcggtattc tttgctcatc tgctcccgtg
     6481 taatttcgtt gccgtgtcgg tcaataaatg ggtttgttcg ttgtgggtgg gggagcttgt
     6541 tgatttcact caataagtca tcattcacta atagcggcgt ggcggttagc tgttgatgat
     6601 aggcaataat cgctagagcc tctaaaaagc ccgtagcccc tgccatttca atattgatat
     6661 gatcttcaag gtcaagagaa agcacaccga taaaaaacgg tctgccgtta tcgtggtgca
     6721 gtcgttcaat tcggatatgc ggaaaatcta aaaagctcaa ggttgctttg ataggttcat
     6781 tcattaaagc agtaataccc gctaaattaa gctcgtgttt cattttggtt tattccttta
     6841 ttctttccgc cacttttaac agttggctaa gttgttttct taaaatgccg agtgtgattg
     6901 aatcggtttc gcttggcatt gcgttatgtt gttgttccag cttcgctatt cggttgccta
     6961 gcacaattaa aagctcgggc aatgggtaag ctcggtttca gaatagaggc ttaaaaacgt
     7021 gaatagtctg ctaaataatc aggtgttatc tcagaaaaat cgagcttttt ccctagtgct
     7081 gcttctaatt cttgtttatt taaaagtaaa ttttggaaat catttaaatt cattgctgcc
     7141 acctagaacg gaatatcatc atcaaaatta aagctgcttg attgtttttc atatccgtta
     7201 ttaattgcta caaaatcaaa ggctgctttt aaattagtat tatctttatc aatgcttgga
     7261 cttattccgc catattgtcg ataaagctgt atatttttat ctttgagtaa gcggtttaaa
     7321 tcgttagctg tttcactaag acttgagtaa tgtttacttg cccattctat gaagtcataa
     7381 acagaaatat aatcattttg aatttggcta atctctgatt gtgtttgctt ggtggttaat
     7441 ttatctaaca aggttggcga ttgtgtttta atcagctgtg ttatttctct tgctgttacg
     7501 taataagcat ttaaatgttc aacatcaata gaattttgag caataacatc acttaaaacg
     7561 cctttaggct gatcgaaagc gtctttgaaa tgtagtgttt tgggctcaat agcatagctt
     7621 tcaccatctt caaagagagt gcaatttaca aaagcattcg tatatattcc attttgctga
     7681 aaggaaaaaa tgaggctttt caatttatcc gctatatgtg aaaaaggttt atttgtatag
     7741 tttgataatt cttgtatcag ttcttgaaag ctgattttgg gctcaatacg attttcaagc
     7801 ctagaaataa attgactgtg atctgccata agcgcccctt taacgtatcc ctttactgtg
     7861 agagcgtgga aagagaaata aagggctttc tcctttcgtg ccggttaatt actccgccac
     7921 tatccacgct aatttgaata aatccgtata gttacggatt gaacttgata ggttgtattt
     7981 tgctaattat tcagataaat tacaagtaat aagctgtgtt ttattacagt aaatcaaaat
     8041 aggctaaaga tgggtttccg gacgctataa aaaagagcat tcaagcggtc atatttcatt
     8101 aaggttttgc gaatagtgcg gaattttcgg agcagtacgc acgcaaggag caaataaaaa
     8161 gccgtcaata tccatcaacg gctatttaaa agtgaggttt tgacaggtag caagtgataa
     8221 gttttagcca tttttgactt gtggaataag cactaaattg aatgccccta gaattttttg
     8281 aatagtgtca aagcgtggtt tgctgccttt ggctagggtt ttatataggc tctctctgcc
     8341 tagccctgtt tgcttggcca gctccgccat tcctcttgct cttgctacat cgttcaaggc
     8401 ttctaaaaat tcgtcttggt cgccctcttt taacacttcc gctaaatagg cttgaatagt
     8461 tgcctcatcg gttaaaaact ccgccacgtc aaaagggcgt aaaccgtgct tttctgctgc
     8521 ctgttcattg atttgtattg tttccattgc tttctcctgt agtttttaat tcagcccata
     8581 atgctttcgc tttctctata tcggcttgct gtgttgattt atcgccgccg tgtaacaaga
     8641 tataaattac atttccttgt tatgcgtaat aaattctata tccggctcct gttgctatcc
     8701 gcatttcata aagtccgcct gtaccggcta aagatttatg atcgccaaag ttgccattaa
     8761 tcgcattttt tatccgtctt gctaccgttg cttttgcgat agggttcttt aaattctcaa
     8821 gccattttga aaaattatcg gtaataataa tttgattagt ggtttgctct ctcatcattg
     8881 ccggcttctt attctattta ttgcttattg tatccattaa gatacagtga gcaagggttt
     8941 ttgccattta cccactttta acccacttta cccactgtca ttttttcttt atttttcagt
     9001 tagttataaa aaaataatag tgaaaagtgg gtaaagtggg taaaaatcga aaagtttaca
     9061 gaattttcat caaggggaat tacgggcata aaaaagccgt caggcggttt acctaacggc
     9121 attacaagcg gtcatttttg gcggaaaatt tactaggcta ttttcaaatg atattgcggt
     9181 aagctacctt gcgaacattc ctctacaaaa tccgcccaca cttggagcag tttaaaacgt
     9241 tgctctaggc gttcgcctct atcataggcg gctttgattc ggtcgctgtt taaatgcgat
     9301 aaggcaacct cgattaaatc gctattgtag cctttctcat taagataagt ggaggcgatg
     9361 gcccgcaagc cgtgagccac taatttgccc ttgtagccca ttcgtttgat cgcaccgttg
     9421 gcggtttgag tattgacgtg cgtttgtggg ttcttcacgc tagggaataa atacgtttta
     9481 ccgccactta gctttttaat ctctcgcaaa agtgcgattg cttggcgtga gagtgtgatt
     9541 ttatgctcaa tgcctcgctt catattttcc gccggtatcg tccacagttt ggctttttcg
     9601 tctatatccg cccattttgc cttagccgct tcattcgggc gggtcattgt gagtaactgc
     9661 cacagaatta aatagcgtgt ctgtaaatga atttgggcgt tttgtaaggt gtataaaaac
     9721 tcgcctaaat cttccggctt aatggttttg aaatgttcaa ccgttgggct atcaaactct
     9781 ttcgcaatat tggcggtagg gttaaacggt atcatttcac ggtgtacggc aaacatcata
     9841 atttcattat gtttttgaat tgcccgtttt aacttctcta gtttgccctc gtcttggtat
     9901 tgcttgaatg ccttgattgc cattggtgcg gttatttgtg tgataggcat tcttccaaag
     9961 tgcggcaaga ggttattttt aattaaggcg attacatctt tttggtagtt gtctgaaaaa
    10021 ttcttcttgg tcttgcggtg ttccagccac gcccacgcta cattttcata agtgttgctg
    10081 atttcgttgg cctttgcctg ttcctgttgt tggcggtggg tttgagggtc gatattttga
    10141 gccaataatg ccctatattc ttctctaatt tctctcgctt gtgctaaaga aatatcaggg
    10201 taagccccaa tgcttaaatc attccgcttt tttgtgaacg gtctttcata cctaaaccgc
    10261 cacaatttag aatttgaggt aataacaagt agtaagccgt taccgtctct taatgggctg
    10321 tcttccggtt tcgcttttct tatttgggta tcgtttaacg gtgtgatttt tctagccata
    10381 gtaaaccttt aggagtataa agcctaaatc ttaggagtat gattttttgt ttgggagtac
    10441 aaaactaaaa gcgataaagc cttatttgaa aaggctctaa agtggtttta ggagtacgaa
    10501 tttttggggg tattccggcg tactcctaaa tatactccta aaatcttcgg atttgattgt
    10561 atcgtatagg tacgcaacgg acaataaaaa agccttgaaa cattgatttt caaggctttt
    10621 taggtatcgg ttgaaccgta taggattata atttggtgga gctgggggga tttgaacccc
    10681 cgtccgaaat ttctctacct tcagtactac atgtttagtc tagtctttaa tttcgcttat
    10741 tcacagcgga cagacacgca atgaataaac tagctttatt taatttagtg tttcgatcct
    10801 aaagcggcgg cgtccacacg atctcgtttt gggtgactta tctttgccct cgtcttacga
    10861 gcggaagctg aggagataag gctttaaagc aggttattaa gctgctaaag cgtattgttc
    10921 gtcgtttgcg actattattt tgcggtttgt ttacgaggcc taccgcacct cgacatgcac
    10981 cttgggcttc gccaatcccg tcgaatccaa aatcagcccc aaaagtagcg gtattctaaa
    11041 ggaaagcggt cgaatttgca aaaagttttg caagtggcgg aacttagcgg tattgaatag
    11101 ctcgaaataa aatcatacaa atcccacacc agatagattt aactctgtta taatgtaaac
    11161 cttgctgaga gtgaagagaa atagaatgaa aaaatttaac gagaacgaga ttgaagatgc
    11221 tgaaattata gatgccgagc cgattgatgt tgatgagata gacgaagaag aaacatcggt
    11281 agaagcaatg catccggctt tggtttccgg ctcaatgcct gtgccgcagg gcaatttgga
    11341 tagctacatc cgaatggcaa atcagtatcc gattctcacc gccgagcaag aaaaagaact
    11401 ggcggagcgt tattattatg atgaagacgt tgaggcggca aaacagctga tcctttccca
    11461 tatgcggttt gtgatccata ttgctcgtgg ctatttgggc tatggtttac cgctggcaga
    11521 tctgatccaa gagggtaata tcggcttgat gaaagcggta aaacggtttg acccgaatgt
    11581 cggcgtgcgg ttggtttctt ttgcggttca ttgggtgaaa gcggaaattc acgaatatgt
    11641 gctgaaaaac tggcgaattg tgaaagtggc aaccaccaaa gctcaacgta aattattctt
    11701 taatttacgc aaaaataaaa accgcttggc gtggtttaat gaagaagaga tcaaaaaagt
    11761 tgccgatgat ttaggggttt cagtggaaga agtacgagaa atggaatctc gaatgaccgg
    11821 acaagattta ggttttgacc tgcctgccgg tgatgacgat gaagacagct acgctccttc
    11881 tatgtatatt gaagatagca gctccaattt cgccgatgac ttggaagacg aacaacataa
    11941 tgggcaggca accgctcaac ttgcctatgc gttagccacc cttgatgaac gtagccaaga
    12001 catcatcaaa acccgctggt tagatgacaa taaagccaca ctgcaagatt tagccgataa
    12061 atataacatc tcggcagagc gggtaagaca gcttgaaaat gccgcattga agaaaatcaa
    12121 ggaagcgatt tcattagacg gctagaaatg cctacaagcg gtgatttttt tactcgctac
    12181 gctcgcactt cgtgccgtcg gcagagccaa cgttcaaacg caagcgtttg tgcaaaattt
    12241 tacgcaaaaa gcaccgcttg tattttgact aaaaatgagg atactatgat taacattacc
    12301 gataaacaaa ttgacccaac tttctaccag cgtctaccag cgagcagacg gctttattaa
    12361 cgttgccaac gctcatttaa aaaacattgc cccaaaccaa gtcagcaatg cgatgttgtt
    12421 tggttgtgcc agatttaacg cctatgttgc ggcaagcaag gcggaatata aacagcagtt
    12481 ggccgattcc agagaagaag ttattcaata ttttgtggag caatacaaag aaatgctcac
    12541 tgcaaattta gatgaatata tccaaaactt cgagcgatat attgaaggga aaaaggcgga
    12601 ttaaccgcct ttgttttgtg gtcaaacttg ttttacaaaa tcacttaaaa cttgattaat
    12661 tctactttgc caacctttac ctgaagctct aaaggcttca agaacgcttt tatcaagacg
    12721 taacgaaacc aattctttct ttgaaccagc tggtctgcca cgttttttca ttgcaattga
    12781 aaactctgat ggcgtaaccg ggcgttcatc gtcatctttt ccgtcccaaa taaaatcttg
    12841 gcttgccgga atagcttgaa tagccataag tagctgtttt ttctctaaat ttttattatt
    12901 caaagtattg ttgtaagtat tcataatatg cctctctttc tgctttagat gctcgccgaa
    12961 agctaattac tctgatgtaa tcttcccttt ctgtatatgc aagtgataat acgagtaaac
    13021 gtccaaatga atatgcaaaa gattgtattc taaattcatt gttacgaata acttcaacat
    13081 caaatcgata gggcgatgag agaacttcat ctgcatcggc aaaatctaat ccgtgcttgg
    13141 ctaaattgat tttgcgttta gtttcgtccc aag
//
LOCUS       DANMBQ010000066        12706 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.066, whole genome shotgun sequence.
ACCESSION   DANMBQ010000066 DANMBQ010000000
VERSION     DANMBQ010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12706
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.066"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(99..521)
                     /locus_tag="PXE92_001576"
     CDS             complement(99..521)
                     /locus_tag="PXE92_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760812.1"
                     /translation="MSSIKEIFSTKNSPINVLMQTEWFLGFILIVVYLDAYFQLVHQV
                     PIYIAIQQKEIYLTKTIDYIAAIFFFSVTFTALFTMMRLLHIFILSDLLDKIGCNTYE
                     LPKIEDIHKYEMLSILKIQAAKENNAELRYYVKKKKKK"
     gene            complement(591..1724)
                     /locus_tag="PXE92_001577"
     CDS             complement(591..1724)
                     /locus_tag="PXE92_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL5760813.1"
                     /translation="MKTIKIGLVGTGYIGRCHAIAYAQAPTLFPLKGKIQLEYLAEIN
                     QALADQKAREFGFQRATDDWRKLVTDPNVDVVDICTPNFLHKEIALEAIKHGKHVYSE
                     KPLALTAQDAKEMVIAAQQAGVKTLVGFNYIKNPTTQLARQIIQNGEIGEVVHFYGTH
                     NEDYLANPNTPIDWHCYKAKAGLGTLGDLAAHIVSIAHYLVGSDIERVIGDMQTVIEE
                     RPSPHNPAEKIKVENEDQASSLIRFANGVMGTLESSRISCGRKMGLTYVVTGTKGTLS
                     YTQERMAELKLYLHDDDKSRQGFKTILVGPEHPDYAAFCVSAGHGIGFNDQKAVEIRD
                     LINGIAADDPMYPDFEEGYKISRVLEAIAKSAEEKRWVEVSEI"
     gene            complement(1855..2883)
                     /locus_tag="PXE92_001578"
     CDS             complement(1855..2883)
                     /locus_tag="PXE92_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5760814.1"
                     /translation="MTTQFLKNMGMVDDKGKIDFIAFFERFGVLIFLILLIIFFTSQN
                     GAFLSQRNIYNVLTEVSIFGIMAVGMTFVILTAGIDLSVGSILAVTAMFAAYIIKGDN
                     TVTLEAGAWGGMSWLIGLSICLGLGTFIGWLHGLGVTKLKLPPFIITLGGMTIWRGLT
                     LVLNNGSPIAGFDEGYRWWGRGDILGVPVPVVIFAVVAIIGYFALHKTRWGRYVYSVG
                     GNPEAARLAGVNINRTLVSVYVVIGALAGLAGFILSARLGSAESVAGVSFELRVIASV
                     VIGGTSLMGGYGRVTGTIIGSIIMGVLINGLVLMDVSAYYQQIIMGLIIILAVAFDTY
                     AKSRRGAL"
     gene            complement(2895..4439)
                     /locus_tag="PXE92_001579"
     CDS             complement(2895..4439)
                     /locus_tag="PXE92_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5760815.1"
                     /translation="MSTPLLEVKDLTKSFSGVMALNGVKLTVGKGEVHALLGENGAGK
                     STLLKALSGAQPQTSGEIIFNGETLSLSDSPFDRQLKGIVTIYQEFNLLPNMTVAENF
                     FLGREPVKGLFVNEKAVNEEAQLVLDNLGLNIKPDTQVSRLSVAQQQMVEIARAMTLN
                     AKLIIMDEPSAALSDKEVETLHQIVRDLKSRGISVIYVTHRLNEVFALCDRFTVFQDG
                     RYSGEGEVKNVNVDQIIKMMVGREVAFTRRPPEETHHTHRPIRLAVKNLHREKPAFDP
                     HGIALHGVSFNIHEGEVLGIAGLVGAGRTEIARCLFGVENYTADEISLDGKPYAATSP
                     LDALEKGVALVPEDRKKEGLVLGLPIKTNMTLPILSKLLKGNLFVDNQKEDDLIETYR
                     QALRIKMASSELEARKLSGGNQQKVILARCMALNPKVLIVDEPTRGIDVGAKSEVHQV
                     LFDMAKQGVAVLVISSDLPEIMAISDRIITLSEGRVTGEIHGDDATEEKLMSMMAVGV
                     QRKAAA"
     gene            complement(4490..5428)
                     /locus_tag="PXE92_001580"
     CDS             complement(4490..5428)
                     /locus_tag="PXE92_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HDL5760816.1"
                     /translation="MKKRIKFVLSALTLGLAMNSFAKDELVVFSLPNLSSPFEVQLQK
                     VAVETSKKLEIKLQVLDGQSSSTKQASDLENAITRGAKGIIISPNDVNAISGAVEEII
                     KEKIPAATLDRKVESSKPVPHFGANNYTGGQEVAKAVKAKYPNGAKIILLTGQPGSTS
                     NIERTKGIRDELAAGGDKYKIVVDQTGNWLRSEGLRIIESVLPTLKEKPEVIISANDD
                     MALGAIEALRSQGLKAGDILVTGFDSTPEALARVKDGWLYLTADQRPSFAVSTALEQV
                     VGNIRESKEVSGADYPPKIILKDNLQEAERFAEISE"
     gene            complement(5760..7271)
                     /locus_tag="PXE92_001581"
     CDS             complement(5760..7271)
                     /locus_tag="PXE92_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL5760817.1"
                     /translation="MSQFVQNFINGAVVESQSQRVTSVFNPATGEETKKVKLSLPNEV
                     DAAIAAADQAFKSWSQQSPLRRARILFKFKELLEANFDELARLISSEHGKIYSDAIGE
                     LTRGLEVVEFATGIPHLQKGEFSANAGRGIDIHSIQQPLGVVAGITPFNFPAMVPMWM
                     FPVALACGNTFVLKPSEKDPSVSIRLAELLKEAGLPDGVFNVVQGDKEAVDILLTDSR
                     IQAVSFVGSTAIAQYIYEKGSANGKRVQALGGAKNHALIMPDADVQGTINALLGAAFG
                     AAGERCMALSVAVVVGDELADKIIEELIPKVKALKIGSGLLPQGVLENDMGPVISKEH
                     KAKIESYIDQGVAQGAKLCVDGRGYKVEGFENGYFVGGTLFDNVTPEMTIWQDEIFGP
                     VLSVVRVKDYAEGIALINSHQYGNGSAIFTADGDSARQFTQDVQAGMVGVNIPIPVPM
                     AFHCFGGWKASIFGPLNVYGTDGVRFYTRMKTITTRWPDSSVRSQAAFNFPTL"
     gene            7490..8314
                     /gene="iolB"
                     /locus_tag="PXE92_001582"
     CDS             7490..8314
                     /gene="iolB"
                     /locus_tag="PXE92_001582"
                     /EC_number="5.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HDL5760818.1"
                     /translation="MSSPLLSKPNFNQHEGLIQHITPENAQWEYVGFDVYQLSKQQIT
                     LESGENELCLVFVTGFGSVYVDDYAFENIGNRTTPFEKIPPYAVYIPPHKSVLVKTEL
                     NLELAVCKAPSQGNYPVRLISPNHIGVEKRGFGNNQRLVHNILPETEAADSLLVVEVF
                     TDEGNTSSYPSHKHDDKHSTEETYLEETYYHRFDPPQGFAMQRVYTDDRTLDECMAVY
                     DKNVVKVPRGYHPVATIAGYNNYYLNVMAGPVRKWKFTWEQDHLWVNSETYKAKFE"
     gene            complement(8390..9841)
                     /locus_tag="PXE92_001583"
     CDS             complement(8390..9841)
                     /locus_tag="PXE92_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL5760819.1"
                     /translation="MPNHKFLLLRFQAYINGKFVSSQNGKTFTVQNPTNGEKIGEVAD
                     LGTEETAQAIEAAAVAQKKWQALLPKERSVILRKWFELIMQNQEELAQILSLEQGKPL
                     AESRGEIAYGASFIEWFAEESKRIYGDVLPQDKAGRRLFVTKQPIGVVAAITPWNFPN
                     AMITRKAAPALAAGCAIVIKPAAETPLSALALAQLADQAGIPKGVFNIITSSDVEGVG
                     RELSTNPTVRKLTFTGSTRVGKILMQQSAGTVKKLALELGGNAPAIVFDDADLDTAVE
                     GVFASKFRNGGQTCVCANRIYVQAGIYEQFLAKLSEKVAQIKLGSPFEEEVTIGALIS
                     ERAVEKVESHINDALSLGAELVLGGERHALGGTFFQPTILKNVTQAMKVAREETFAPL
                     APIFKFETEEEVIQWANDTEFGLAAYLFSQNIGRIWRVSEQLEYGIVGINEGIISNEI
                     APFGGWKESGLGREGSKYGIEEFLEIKYLCMKV"
     gene            complement(10019..11329)
                     /locus_tag="PXE92_001584"
     CDS             complement(10019..11329)
                     /locus_tag="PXE92_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5760820.1"
                     /translation="MIYAEIFVVLAAIYLGLRSGGLGIGLYGGLGLAILTLGFGLPMG
                     SIPVDVMLIIMTVVIGAAVLQAVGGMDLLVRYAEVLMRKNPKYINFIAPMITWLMTIM
                     AGTGFIVFSTLPVIAEVAKESGIRPSRALAGSVVSSQLAIAGSPLSAAMAAMIAVMEN
                     NSVTFFQVIAVCLPVSFIASMVAAFVASKQGCELQNDVVYLERLKAGIVSPSRKLASE
                     STYSKGAKLSIGIFLLATVLVVLLAAVPGLKPVYENGKSMSTRDIIIVMMLASSCLMM
                     LVGKIKPDTIVASPIFRSGMTSIAVIIGIVTLGMTFVDAHLIEIKASIGNILTEYPML
                     LAVVLFFTCALLYSQGSTSALIIPLAVSLGIPNWAILASFIAITGIFILPTYPTSLAA
                     MELDTTGSTRAGKYIIDHPFMLPALVGVAVGLAFGFVWAPMIVS"
     gene            complement(11345..12040)
                     /locus_tag="PXE92_001585"
     CDS             complement(11345..12040)
                     /locus_tag="PXE92_001585"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HDL5760821.1"
                     /translation="MARNIIGILGGMGPAATADMFQKFIRLTPADCDQAHIPLLISSI
                     PDIPDRTRYILANGENPAPVMEKYIEGLESAGATCIIIACNTAHYWFEHLKAKSQVEM
                     LSMIDCVVDEVLKCGKWRVGLLATDATLAVDLYKKQLEAQGLTFICPTENGQKAVMDS
                     IYLLKSGELEKATELMLQQRDELIRLGAEVIILGCTEVPIILAQEIEREPMRYVDSTL
                     VLVKKAIDWYQTH"
     gene            12256..>12706
                     /locus_tag="PXE92_001586"
     CDS             12256..>12706
                     /locus_tag="PXE92_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5760822.1"
                     /translation="MKNIETKWLEDFLTLEECRHFSQAAEKRNLSQSAFSRRILALEE
                     VVGVKLFDRTSIPLQLTEQGKLFHSQTRNLLQQLQNNLDELLGHNCNLPNIKFAAAHS
                     LSLSIMPKLIKKLSQTNENFIYSVEAIDVDQTVNTLIEGKSDFIFSFY"
BASE COUNT         3706 a         2896 c         2455 g         3649 t
ORIGIN      
        1 cccaagaggg taattccccc attcttttgc caaacagata tgaataatca aaaagaagat
       61 aatacctaaa aaacgtcgag atattgatat tctgactctc attttttctt cttctttttc
      121 acatagtatc tcaactctgc attattttcc ttagctgctt gtatttttaa tattgaaagc
      181 atttcgtatt tgtgtatatc ttcaatttta ggcagctcat aagtgttaca tcctatttta
      241 tcaagaaggt ctgataaaat aaaaatatgt aataaacgca tcattgtaaa taatgcagta
      301 aatgtaactg aaaaaaagaa aattgctgca atataatcaa tggtttttgt gagatatatt
      361 tccttttgct gtatcgcaat atagataggc acttgatgaa caagttggaa gtaagcatcc
      421 aaataaacaa ctatcaatat gaagcctaaa aaccattctg tttgcataag aacattgata
      481 gggctgtttt ttgtgctaaa aatttcttta attgaactca taatttttcc ttaaatgtaa
      541 aaaaacgtac ctcaaccaat ttgagatacg tttctatttt aatgtaatta ttaaatctca
      601 ctcacctcca cccacctttt ctcctccgcc gattttgcta tcgcttccaa tactctggag
      661 attttatagc cttcttcaaa atcgggatac atcgggtcat cagcggcgat gccgttgatg
      721 aggtcacgga tttccaccgc tttttggtcg ttaaaaccga tgccgtgacc ggcactcaca
      781 caaaaagcag cgtagtcggg atgttccggg ccgactaaaa tggttttgaa tccttggcgg
      841 gatttatcgt catcgtgcaa atagagtttg agttctgcca ttcgttcttg ggtatagctg
      901 agcgtgcctt tagtacctgt aacgacatag gtcagcccca ttttacgccc gcaggaaatg
      961 cgggagcttt cgagcgtgcc cattacccca ttagcaaatc gtatgagact acttgcctga
     1021 tcttcgtttt ctactttgat tttttctgct ggattgtgcg gactagggcg ttcttcaatc
     1081 actgtttgca tatcgccgat aacacgctca atgtctgaac caaccaaata gtgtgcgata
     1141 ctgacaatat gtgcggctaa atctcccaac gtaccaagcc cggctttggc tttgtagcag
     1201 tgccaatcaa tcggggtatt agggttggcg agataatctt cgttatgcgt gccgtagaaa
     1261 tgcaccacct caccaatttc gccgttttga ataatttggc gagccagttg ggtggttgga
     1321 tttttgatat agttgaaacc gaccaaggtt ttaactcccg cttgttgagc ggcaatcacc
     1381 atttctttgg catcttgggc ggtgagtgca agcggttttt ctgaatagac gtgtttgccg
     1441 tgtttaatcg cttctaaggc aatttctttg tgcagaaaat ttggtgtaca aatgtccacc
     1501 acatcgacat tcggatcggt aaccaatttt cgccaatcgt cagtagcacg ctgaaagcca
     1561 aattctcggg ctttttgatc ggctaatgct tggttgattt cggcaaggta ttccagttgg
     1621 attttgcctt taagtggaaa cagggttggg gcttgagcgt aggcaatggc gtggcagcga
     1681 ccgatatagc cggtgccaac taagccgatt ttgatggttt tcataatact atcccagtag
     1741 ggtgcgtttg ctaacgcacc attagaattt tcagtgcatt ggcaaacgca ccctataaga
     1801 aagcggtctg gttttgcaaa atttttacaa aatcagaccg cttgtgttag ctatctataa
     1861 tgctcctcgt ctgctcttcg cataggtgtc gaaggcaacg gcaaggatga tgattaagcc
     1921 cataatgatt tgttggtagt aagcggaaac gtccattagt actaaaccgt taatcaatac
     1981 acccataata atggagccga tgatggtgcc tgtgactcgt ccgtatcccc ccattaggga
     2041 agttccgccg ataaccactg aggcaattac acgtagctca aaagaaacgc cggcaacgga
     2101 ttcggcactg cctaaacggg cggagagaat gaaaccggca agtcctgcca atgctccgat
     2161 caccacataa acactgacta aggtacggtt aatattcaca ccggctaaac gggctgcttc
     2221 cggattgcca cctaccgagt acacatagcg tccccagcgg gttttatgca atgcgaagta
     2281 accgataatg gcgactacgg caaaaatcac taccggcacc ggtacgccta aaatatcgcc
     2341 acgtccccac cagcggtaac cttcgtcaaa tccggcaatt ggcgagccgt tatttaacac
     2401 aagtgttaaa ccacgccaaa ttgtcatacc gccaagcgtg ataataaacg gtggcagttt
     2461 gagtttagtg acgcctaagc cgtgtaacca accaatgaaa gtgcctaaac ctaaacagat
     2521 actcaaacct atcagccagc tcattccgcc ccaagcaccg gcttctagcg ttaccgtatt
     2581 atcgcctttg ataatatagg ccgcgaacat tgcggtaaca gcaaggattg agccgacaga
     2641 gagatcgatc cctgcagtta agatgacgaa agtcattcct accgccataa tgccgaaaat
     2701 cgacacttcg gttaaaacgt tatagatgtt gcgttgcgat aaaaatgccc cgttttgtga
     2761 agtgaagaaa ataatcagta agatcaagaa aatcagtacg ccgaaacgtt caaagaaggc
     2821 gataaaatcg atttttcctt tgtcatcgac catacccata ttttttagaa attgcgttgt
     2881 catacaaacc tctcttatgc tgccgcttta cgctgaacgc caacagccat cattgacatt
     2941 aatttttctt cggtggcatc atcgccgtga atttcgccag ttacccgacc ttcggaaaga
     3001 gtgataatgc ggtcggaaat cgccataatt tccggtaaat cggaggaaat cactaatacc
     3061 gcaacacctt gttttgccat atcaaacagc acttggtgaa cctcagattt tgccccaaca
     3121 tcaatacctc gtgtcggctc atcaacaatt agtactttcg ggttgagtgc catacaacgg
     3181 gctaaaatca ctttttgctg attaccaccc gataatttgc gggcttcaag ttcgctactt
     3241 gccattttga tgcgtaacgc ttggcggtag gtttcgatta aatcatcttc tttttgatta
     3301 tcgacaaaca agttaccctt caataatttg cttaaaatcg gcagggtcat attggtttta
     3361 atcggtaaac cgagaactaa gccctctttt ttgcgatctt ccggcacaag ggcaacccct
     3421 ttttccaaag catctaacgg cgaggtggca gcataaggct taccgtctag gctgatttca
     3481 tcagccgtat aattttctac cccaaacaag caacgggcaa tttcagttcg ccctgcgcca
     3541 actaagccgg cgatccctaa tacttcaccc tcgtgaatgt taaaagagac accgtggaga
     3601 gcaatgccgt gtggatcgaa tgccggtttt tcccgatgca gatttttcac agctaaacgt
     3661 attggtcggt gggtatggtg agtctcttct ggtggacggc gagtaaaggc aacttcacgt
     3721 cctaccatca ttttaataat ttgatcgaca ttcacatttt tgacttcacc ctcaccagaa
     3781 tagcgcccgt cttggaaaac ggtgaaacgg tcgcataggg caaacacttc gtttaagcgg
     3841 tgggtcacat aaatcacgct aatgccacgg ctttttaaat cacgcacgat ttggtgtagt
     3901 gtttccactt ctttatcact taaggcagcg gacggttcgt ccataataat caacttagcg
     3961 tttaaggtca ttgcacgggc aatctcgacc atctgctgtt gtgccacact taaacgggaa
     4021 acttgggtgt caggtttgat atttaagccg agattatcca gcactaattg tgcttcctca
     4081 ttcaccgctt tttcattgac gaataaacct ttcaccggct ctctgcccaa aaagaaattt
     4141 tcagcaaccg tcatattcgg taacaagtta aattcttgat aaatcgttac gatgcctttg
     4201 agttggcgat caaacgggga atcgctcaaa cttaaggttt caccgttaaa gataatttcg
     4261 ccacttgttt gtggctgagc gcctgaaagt gcttttaata aggtcgattt tcctgcaccg
     4321 ttttcaccca acaatgcgtg aacttcgcct tttcccacag tcagtttcac gccattgagt
     4381 gccataacac cagagaaact ttttgtcaga tctttcactt caagtaaggg agtagacata
     4441 caacctccgt aaaaaaacgc cctccggcct cagccggaag gcagataaat tattcgctga
     4501 tttctgcaaa acgttctgct tcttgcagat tatctttcag gataattttt ggcggatagt
     4561 ccgcaccgct cacttctttg ctctcacgga tattgccaac cacttgctct aatgcggtgc
     4621 ttaccgcaaa acttgggcgt tggtcagcgg tgagatacaa ccagccatct ttcacacgtg
     4681 caagagcctc aggggttgag tcaaagccgg ttactaaaat atcgccggct ttcaaacctt
     4741 ggctacgcaa tgcttcaatc gcaccaagtg ccatatcgtc attcgctgaa ataatcactt
     4801 ctggtttctc ttttaaggtt ggtaacacac tttcaataat gcgtaatccc tcagaacgga
     4861 gccagttacc ggtttgatca accacgattt tatatttgtc accaccggca gctaattcat
     4921 cacgaatacc tttggtacgt tcaatgttag aggttgaacc cggctggccg gttaaaagaa
     4981 taatttttgc cccattcggg tatttggctt tcactgcttt tgcgacttct tgaccgcctg
     5041 tgtagttatt tgccccaaag tgtggaaccg gcttactgct ttcaactttt cggtctaatg
     5101 tcgcagcagg aattttttct ttgataattt cttccactgc acctgaaatc gcattcacat
     5161 cattcgggga aatgataatg cctttagcac cacgggtaat tgcattttct aagtcagaag
     5221 cctgcttagt agaagaactt tgcccgtcta atacttgcaa tttgatctcc aactttttac
     5281 tggtttctac cgctactttt tgtagttgaa cttcaaacgg gctggatagg ttcggtaagc
     5341 taaataccac aagctcatct ttcgcaaagc tgttcattgc taagcctaac gttaaagcac
     5401 tcaatacaaa tttaatacgc tttttcatta caaaatcctc tttttaagat gggaattgac
     5461 ggcgaatatt gccaatgtta cttcaaactg cgaaggaaac ttaagtctta tttcaataat
     5521 aaacctcaat gaaataaatt tttcaattta gaatatatca ttcaaaattt tccaaaccaa
     5581 atgctttgtt tcaaatttgt tacgtagatc acatttttag gaagagataa atgcaagcgg
     5641 tcaaaacagg tcgctttttt gcaaaaattt gaataaaaat gaccgcttgt gagatgaaaa
     5701 ccaataaaaa agcggtgatt tctcaccgct aaacactcaa aaaagaaatg tactcgttat
     5761 tataaggttg ggaaattaaa tgccgcttgg ctacgcaccg agctgtccgg ccaacgggtt
     5821 gtgatggttt tcatacgggt gtagaaacgc acgccgtctg tgccgtacac attgagaggc
     5881 ccgaaaatag aggctttcca accgccaaag cagtggaacg ccattggcac aggaattgga
     5941 atattcacgc ccaccatacc ggcttgtaca tcttgggtga attgacgtgc tgaatcgcca
     6001 tctgcggtga aaattgcact accattgccg tattggtgac tgttaatgag tgcgatccct
     6061 tcggcataat ctttcacacg cacaacagag agaaccggtc cgaagatttc atcttgccag
     6121 atggtcattt caggtgtcac gttatcaaac agcgtacctc cgacaaagta accgttttca
     6181 aacccttcga ctttatagcc tcgaccatcg acacagagtt tcgccccctg tgccacccct
     6241 tgatcgatat agctctcaat tttggcttta tgctctttgg aaatcaccgg ccccatatca
     6301 ttttcaagca cgccttgtgg tagtaagcct gaaccgattt tcaatgcttt gaccttagga
     6361 attagctctt caatgatttt atcggctaat tcatcaccaa caactaccgc taccgatagt
     6421 gccatacaac gttcaccggc tgcaccaaat gctgcgccca gtaaggcatt aattgtgcct
     6481 tgtacatcag catccggcat aatcaaagcg tggtttttcg caccgcccaa ggcttgaacc
     6541 cgtttgccgt ttgctgagcc tttctcataa atatattgtg caattgcagt tgagccgaca
     6601 aaactcaccg cctgaatgcg agagtcggtt aaaagaatat ctaccgcttc tttatcacct
     6661 tgcaccacat tgaatacacc gtccggcaag ccggcttctt ttaataattc tgccaagcga
     6721 atagacacac ttgggtcttt ttcagacggt tttaaaacga aagtgttacc gcaagcaagt
     6781 gccactggga acatccacat cggtaccatt gccgggaaat tgaacggggt aatgcctgcc
     6841 actacgccca acggttgctg gattgagtga atatcaatgc cacgccctgc attggcggag
     6901 aactcacctt tttgtaagtg tggaatacca gtggcaaatt ccaccacttc taaaccacgg
     6961 gttaattcgc caatcgcatc ggaatagatt ttgccgtgtt ctgagctgat taaacgagcc
     7021 aactcatcaa agtttgcttc caataactct ttgaatttaa ataaaattct ggcacggcgt
     7081 agtggtgatt gttgtgacca gcttttgaaa gcctgatcgg ccgctgcaat tgccgcatcg
     7141 acttcgtttg gcaggcttaa tttgactttt ttggtctctt caccggttgc gggattaaat
     7201 accgaggtaa cacgctggct ttggctttca acgactgcac cgttaataaa attttggaca
     7261 aattggctca ttggaggctc cttatcaact gattgagagg aaaaacggat aaaatacagc
     7321 cgataaacta ccgctaaaaa tggaaaatat caatacataa tactaaaaaa tgaaaatttt
     7381 atttcatttt tgtgatctaa gtagcaagtt tacagattgc cggtattaaa atgagacaaa
     7441 atttcgtata gtttgaaagc gtattccatt tcgttaagcg aggtttccta tgtctagtcc
     7501 attattgtct aaacccaatt tcaaccaaca tgaagggtta attcagcaca ttacccctga
     7561 aaatgcacag tgggaatatg ttggatttga tgtttatcag ctcagtaagc aacaaattac
     7621 gctggaaagt ggtgaaaatg aactttgtct agtctttgtg accggttttg gctctgtcta
     7681 tgttgatgat tatgcttttg aaaatatcgg caaccgtacc acgccatttg aaaaaattcc
     7741 gccttatgcg gtctatatcc cgccacacaa aagcgtgttg gttaaaaccg aactcaattt
     7801 agaattggca gtgtgcaaag caccaagtca gggtaattat ccggtgcgtt tgattagccc
     7861 gaaccatatc ggtgtggaaa aacggggctt tggcaacaat caacgcttgg tgcataatat
     7921 tctgccggaa accgaagcag ccgacagttt gctggtggtg gaagtcttta ccgatgaagg
     7981 caataccagt tcctacccaa gccacaagca cgatgacaaa cactctaccg aagaaaccta
     8041 tttggaagag acctactacc accgcttcga tccaccacaa ggttttgcaa tgcaacgggt
     8101 ttataccgat gatcgcacac ttgatgaatg tatggcggtg tatgataaaa atgtggttaa
     8161 agtgcctcgt ggctaccacc ctgttgctac cattgccggc tataacaact actacctaaa
     8221 tgttatggca gggccggtac gcaaatggaa atttacttgg gaacaagatc atctttgggt
     8281 gaacagtgaa acctataaag ccaaatttga gtaatgcaag cggtcttttt ccaccaattt
     8341 tttacaaaat aagggattaa aaatgggacg cttttggcgt cccattcggt tatactttca
     8401 tacaaagata ttttatttct aaaaactctt caataccgta cttcgaacct tcccgcccaa
     8461 gtccagactc tttccagccg ccgaacggag cgatttcgtt actgatgatc ccctcattaa
     8521 tcccgacaat gccatattcc aactgctccg atactcgcca aattcgcccg atattttggc
     8581 tgaataagta agccgccaaa ccaaactcag tatcattcgc ccactggata acctcttctt
     8641 cggtttcaaa tttgaaaatc ggggcaaggg gagcaaaggt ttcctcacga gccactttca
     8701 tcgcttgagt gacatttttc agaatggttg gctggaagaa tgtgccaccc agtgcgtggc
     8761 gttcaccgcc taacaccagt tctgccccaa gtgaaagggc atcgttaatg tggctttcga
     8821 ctttttccac cgctcgttca ctaattagtg cacctatcgt gacctcttcc tcaaatggcg
     8881 agccaagctt gatttgagcc actttctcac tcaattttgc aagaaattgc tcataaatgc
     8941 ccgcttgcac ataaattcgg ttagcacaga cgcaggtttg cccaccgtta cggaatttag
     9001 aggcaaacac gccctcaacc gctgtatcta gatccgcatc atcaaacaca atcgccggtg
     9061 cattaccgcc tagctccaat gccaattttt ttaccgtccc tgccgattgt tgcattaaaa
     9121 ttttgccgac acgggtggag ccggtaaagg tgagtttgcg tacggtcgga ttagtgctca
     9181 actcccgccc tacaccttcg acatcgctac tggtaataat gttaaatacc cctttgggaa
     9241 tacctgcttg atccgctaat tgggctaatg ctaaggcaga aagcggggtt tctgccgccg
     9301 gtttaatcac aatcgcacaa cctgccgcta acgccggtgc cgctttacgg gtaatcattg
     9361 catttgggaa attccacggt gtaattgctg ccaccacgcc aatgggttgt ttagtcacaa
     9421 acaagcggcg accggcttta tcttgtggca agacatcgcc ataaatccgc ttgctttctt
     9481 cggcaaacca ctcgataaaa ctggctccat aggcaatctc gcctcgactt tctgccaatg
     9541 gtttaccctg ttctagactt aaaatctggg cgagttcttc ttggttttgc ataatcagct
     9601 caaaccattt acgcaaaatc acggaacgct ctttgggcaa taatgcctgc cattttttct
     9661 gggcaactgc ggctgcttca atcgcttgag cggtttcttc cgtgcctaaa tcagccacct
     9721 caccgatttt ctcaccatta gtcggattct gtaccgtaaa ggttttccca ttttggcttg
     9781 aaacaaattt accgttaata taggcttgga aacggagtag caaaaatttg tgatttggca
     9841 taatcactcc ttgaatggtt aaaaagagaa caatattgac tataatccaa tttcagtaaa
     9901 gagaaaagag ctgaaaaata actttttact caataataaa gcaccttaga caagcgttct
     9961 tctaaggtgc agccatttat tattgagaat taacttaaat tctctacata tttaataatt
    10021 aagatacaat cattggagcc catacgaatc caaaagcaag cccaacagca accccaacta
    10081 aagctggaag cataaacgga tgatctataa tatatttgcc agcacgagtt gaacccgtag
    10141 tatctaattc catcgctgct aatgaagttg ggtaggttgg caggataaaa atgcctgtaa
    10201 ttgcaatgaa agaagccaaa attgcccagt tagggatccc caagcttact gctaatggaa
    10261 taataagagc agaagttgac ccttgtgaat aaagtaatgc acaagtaaaa aagagtacta
    10321 cagctaacaa cattggatat tcagttaaaa tatttccaat agaggcttta atttctatta
    10381 aatgtgcatc gacaaaagtc atacctaatg taacaatccc gataattacc gcaatagaag
    10441 tcattcctga gcggaaaatt ggactagcca caatcgtatc aggtttaatt tttcctacca
    10501 acatcattaa gcacgaagag gctaacatca tcacaataat tatatctcgg gtactcattg
    10561 acttcccatt ttcatatact ggctttaacc ctggaacggc tgcaagtaga acaaccaata
    10621 cagttgctag taagaaaatg ccaatcgata gttttgctcc ttttgaatag gtagattcac
    10681 tcgctaactt acgagatggg ctgacgattc ctgcttttaa acgttctaaa taaacaacat
    10741 cattttgcaa ttcacagccc tgcttagaag caacaaatgc agcaaccata gaggcaataa
    10801 aagaaacagg taagcatact gctattactt gaaaaaatgt aacactgttg ttttccatta
    10861 ctgctatcat agccgccatt gcagcactca atggagaacc tgcaatagct aattgagaag
    10921 acacaaccga gccggctaat gctcttgaag ggcgaatacc actctctttt gccacttctg
    10981 caatcacagg taaggtggaa aagacgataa aacctgtacc agccataatc gtcattaacc
    11041 aagtaatcat cggtgcaata aagttaatat atttaggatt tttacgcatc aatacttccg
    11101 cataacgaac aagtaaatcc atacctccta ctgcttgtaa cacagcagca cctattacaa
    11161 cagtcataat aatcagcatt acatcaactg gaatagaacc cataggtaaa ccaaaaccta
    11221 gagttagaat cgcaagccct aaaccaccat atagtcctat tcctaagccc ccagaacgca
    11281 gtcctaaata gattgcagca agtaccacaa agatttctgc ataaatcata tccatctcct
    11341 taaattaatg agtttgatac caatcaattg cttttttaac caataccaac gttgaatcta
    11401 cataacgcat tggctcacgc tctatttctt gagctaaaat aataggtact tctgtacaac
    11461 ctaaaataat tacttctgca cctaaacgaa tgagttcatc acgttgttgt aacattagct
    11521 ctgtggcttt ctctaactca cctgatttta ataaatagat actatccatt actgcctttt
    11581 gaccattttc tgtcgggcaa ataaaagtca gtccttgtgc ttcaagctgt tttttgtata
    11641 ggtctaccgc caaagttgca tcagttgcca acaatccaac ccgccatttt ccacacttca
    11701 aaacctcatc aaccacacaa tcaatcatac ttagcatctc tacctgactt ttggccttca
    11761 agtgttcaaa ccaataatgt gcagtattac atgcaataat gatgcaggtt gcccctgcac
    11821 tctcaagccc ttcaatatat ttttccatta ccggagccgg attctctcca tttgctaaaa
    11881 tatagcgagt tctatctggt atgtcgggaa tagaggaaat caataatgga atatgagctt
    11941 gatcacaatc agctggtgtt aagcggataa atttttggaa catatctgct gttgctgcag
    12001 gtcccattcc acctaaaatg ccaataatat ttcttgccat acacttctcc ttataagatt
    12061 taatttactg cgatgactta tacaaacaag ttatgcaaaa aagaaatgca ataaatcgaa
    12121 tcagtatgca aaaaatgcaa caaagctctt tatagataga aaaaaaatct ttaaaatcaa
    12181 taaaatacta atatatcaaa tataaattta atgcatttaa tgaaatcata atgcgaaatt
    12241 tgcattggtt aggatatgaa aaacatagaa acaaaatggt tagaagattt cttaacgcta
    12301 gaagaatgtc gccatttttc tcaggcagca gaaaaaagaa atttgtcaca atctgcattt
    12361 agcagacgta ttttagcttt agaagaagtt gtgggagtga agttatttga tcgtacctct
    12421 attccattac aactcacaga acaaggtaag ctatttcatt cacaaacgcg aaacttatta
    12481 caacaattac agaataatct agatgaatta ttaggacata attgtaactt acctaatatt
    12541 aaatttgcgg cggctcattc cctctctctt tctattatgc ccaaattaat taagaaatta
    12601 tcacaaacaa atgaaaattt tatttattcc gttgaagcaa tcgatgttga ccaaacagta
    12661 aatactctaa ttgaaggaaa aagtgatttt attttttcat tttatg
//
LOCUS       DANMBQ010000067        12660 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.067, whole genome shotgun sequence.
ACCESSION   DANMBQ010000067 DANMBQ010000000
VERSION     DANMBQ010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12660
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.067"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            54..1508
                     /locus_tag="PXE92_001587"
     CDS             54..1508
                     /locus_tag="PXE92_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5760823.1"
                     /translation="MKKIVSTLLILTSNLAFAETTPAQLQEKMDNQRMQKNLHTLEKP
                     EPQAKPQAVNAQAHRQSISISSQQLLQQPELLNSAMLTALVTNHTENVQFLLPIYQQL
                     PASKQNSEVVQWAEAVNAKAKQNYSEAIKGYRQLLAKYPENQPIRMQLAVALFENREN
                     EAAEAQFYKLQADKLPQEIANAVNSYLEAIGKQDQWSFQGGLTYLNDPNINNAPNAGT
                     TYGNWTAPKKESAQGVGFHFEADKKWSWGNGFFHEFRLNGNGKYYWNNKKYNEYSLRE
                     SLGLGYQNAKQKITLLPFFEQMWYAGGSSQTESTKRYSNAGGVNARWQYWITPQWQSA
                     ISYEYAEQRYTRRQHLDGNYHFIAPSLYFYPNSRQYWFVGANFNRTSPRDLDDSFIRR
                     GVSIGWGQEWKNGLSTQLSASYARKQYRAPMPIFQITQRNSEYGVQASIWHRALHFKG
                     ITPRLTWQYNKVKSNHSFYSYDKNRVYIEFSHTF"
     gene            complement(1556..4153)
                     /gene="mutS"
                     /locus_tag="PXE92_001588"
     CDS             complement(1556..4153)
                     /gene="mutS"
                     /locus_tag="PXE92_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HDL5760824.1"
                     /translation="MTQDFSTHTPMMQQYLQLKAQNPDILLFYRMGDFYELFYDDAKR
                     AAALLDISLTKRGQSAGEPIPMAGVPYHAVEGYLAKLVALGESVAICEQIGDPATSKG
                     PVERKVVRIVTPGTVSDEALLPERQDNLVAAVYEEKGTFAIATLDMTSGRFLISELAS
                     KEALSAELQRVQPAEILYAEDFSAASILTNYKGLRRRPVWEFELVTAIQLLNRQFGTQ
                     TLAGFGVEKAVVALCAAGCVLHYAQETQRTALPHINAIHLAQHSDTILLDAATRRNLE
                     LTQNLAGGTENTLAAVLDKCVTPMGSRLLKRWIHQPIRDCGKLQARQKAITALIQYER
                     MSDLQPLLQQVGDMERILARVALRTARPRDLTRLRTALAQLPEIAKNSQNLTASIDQL
                     LAQLADFSPLHDLLERAIIENPPQLIRDGGVIAEGYNAELDEWRQLSDGATQYLENLE
                     IRERESTGIDSLKIGFNAVHGYYIQISQGQAHKAPIHYVRRQTLKNAERYIIPELKTY
                     EDKVLKAKGASLALEKQLYDELFDVLMPRLGELQLAAMMLSELDVLTNLAERADSLGY
                     VCPSFSPMRMVNIKGGRHPVVEQVLTEPFIANPVFLNSQRHLLIVTGPNMGGKSTYMR
                     QIALITLMAYIGSFVPAESAEIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQ
                     ATENSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTGLPNQLKG
                     VANVHLDAREHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEI
                     SHQTKQANEHPQADLLFSDGFDLQKNEAIQPLVVENEVEKALKALQPDELTPRQALDE
                     LYRLKKLLG"
     gene            4303..4866
                     /locus_tag="PXE92_001589"
     CDS             4303..4866
                     /locus_tag="PXE92_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5358 domain-containing protein"
                     /protein_id="HDL5760825.1"
                     /translation="MLRKIVLLSTGLLLAACSSNEPQQPEAFPGEFANADYVLSEENA
                     QKWVIASEQAKQCIYPNLTRIQQEHFSKEDSYIFSQYVFFYPLEEIIGEQYVKIIQND
                     EKSMGYAQYLFKKLKNNEAVEALPKKQCATLRTNAKNDLAVVKGQYQSGMIEETNSQE
                     GKSGDKVATNDNKFFFDIIKWGSMLLL"
     gene            5040..5669
                     /locus_tag="PXE92_001590"
     CDS             5040..5669
                     /locus_tag="PXE92_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HDL5760826.1"
                     /translation="MAVSATSFAQTTQPTAAEQMNAVKASVAEKATVAKEATKEKAAE
                     LKAGSAEKMAIAKAKTESFKDSAKNKMDAVKATTAEKTDVIKAKAASASDTMKVKAQE
                     AKAATAEKAATAHETLNSAKTATAEKAASMKAAATEKMSAVKKSQKVNINTANEEQLQ
                     SLTGIGEAKAKAIVEYRKKHGKIKNAAELANIPGIGDATIEKVAPYLTF"
     gene            5817..6446
                     /locus_tag="PXE92_001591"
     CDS             5817..6446
                     /locus_tag="PXE92_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5760827.1"
                     /translation="MALDFNSVGLDSVEAKGGYGIGLQIGQQLLGSGMDVNAETVARG
                     IYDVLNNNEPAIDINEVTAALQELGQRAEAAQAEAFKAIDAENKAFLEENKKANGVIV
                     TDSGLQYEILTEGTGEKPTATSTVRVHYTGSLIDGTVFDSSVKRGQPAEFPVNGVIRG
                     WTEALQLMPVGSKWRLTIPQELAYGERGAEASIPPFATLVFEVELLDIL"
     gene            6512..7027
                     /locus_tag="PXE92_001592"
     CDS             6512..7027
                     /locus_tag="PXE92_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HDL5760828.1"
                     /translation="MQKKSLISRLLKNIFLYGSLFIIISLVVDWYRSPSAPAQFEQTV
                     HYDIQHQPKVIAQLSHEKPMLLYFWGSWCHYCQVVSPNIQQLANDGTEVLGVALKSGD
                     ENDVQAYLNENGYTFATLNDPSGDFSRGWNIQATPTILIIKDGKIAHHTTGYTSYLSL
                     KFRLWLADVLY"
     gene            complement(7075..8005)
                     /locus_tag="PXE92_001593"
                     /pseudo
     CDS             complement(7075..8005)
                     /locus_tag="PXE92_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433453.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(8064..8714)
                     /locus_tag="PXE92_001594"
     CDS             complement(8064..8714)
                     /locus_tag="PXE92_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha4 family transposase"
                     /protein_id="HDL5760829.1"
                     /translation="MRKSRLSQYKQNKLIEQFVAGVTARTASELVNVNKNTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEVDESYLGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVV
                     VPNTQFATLLPIIREKVKPDSIVYTDFYRSYDVLDVSEFNHFRINHSTHFAENQNHIN
                     GIENFGSQAKRHLRKFNGIPKVHFELYLKECEWRFNHSDLKSQISFLKQLVKGSLG"
     gene            9043..10401
                     /gene="mnmE"
                     /locus_tag="PXE92_001595"
     CDS             9043..10401
                     /gene="mnmE"
                     /locus_tag="PXE92_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDL5760830.1"
                     /translation="MKDTIVAQATPIGRGGVGILRVSGPLAETVAQAVLGKTLPPRIA
                     NYLPFKDEDGTVLDQGIALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQVKGLR
                     IARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINALVDS
                     VIYLRTYVEAAIDFPDEEIDFLADGKIEAKLNEIIAQLDGVRREAKQGSILREGMKVV
                     IAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS
                     DEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNK
                     VDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLREHLKKSMGYQSSTEGGFLARRRHLQ
                     ALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCI
                     GK"
     gene            10402..11667
                     /gene="tilS"
                     /locus_tag="PXE92_001596"
     CDS             10402..11667
                     /gene="tilS"
                     /locus_tag="PXE92_001596"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDL5760831.1"
                     /translation="MALFNRFQTQCATHLPNQTAFLIGLSGGVDSVVLLHLFARTSFH
                     VRAIYVHHGLSPNADDWAAFCEQYCKRLNIPFILQKVRVDSSNGVENGAREARYQAIQ
                     QQLKPNEVFATAHHLDDQAETFLLALKRGSGVKGLSAMQAVTFLQNFTVFRPLLTFTK
                     SDLMGYAVQHQLGWIEDESNADNRYDRNFLRNSILPLLNQRWQHFSQMVARSAQHCAE
                     QQALIEELLSNELKSRTGEKQQLNINGFGQFSLAKQQQLSRLWLEQNGVRMPSQAQLQ
                     AVISELIFAKADKNPQVKVGENIIRRYQQAIYVTEEIADIPPFEVVLPTETKVELPYQ
                     LGTIIRQQQEIICKKNGKNHRLQLPQELAQSTISIKIGQLGKVKCYGKAQREEMKKIW
                     QNHGIPVWERNRTPLIFWQDELVGLLPIL"
     gene            complement(11657..12550)
                     /gene="xerD"
                     /locus_tag="PXE92_001597"
     CDS             complement(11657..12550)
                     /gene="xerD"
                     /locus_tag="PXE92_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HDL5760832.1"
                     /translation="MAELDPIIEQFLDTLWQEHGLSENTVASYRSDLERFSDYFSEPK
                     AFLSLDHIDLQGFLGERLEQGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSP
                     KRGASLPKSLSEDQVMDLLDAPNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNIS
                     LKQGVVRIIGKGDKERLVPLGEEANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMT
                     RQTFWHRIKHYAVLAGIDADKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQ
                     IYTQVAKARLKSLHQQFHPRG"
BASE COUNT         3797 a         2941 c         2691 g         3231 t
ORIGIN      
        1 tcactaaagg ctattgaaaa atagcctttt ctattcaaat aaaagatagc tttatgaaaa
       61 aaatagtctc aacgctttta atccttacct caaacctggc atttgcggaa accacaccgg
      121 ctcaacttca agaaaaaatg gataaccagc gaatgcagaa aaacctacat acattagaaa
      181 agcctgaacc tcaagccaaa ccacaagcgg ttaatgcaca ggctcaccgg caatcgatct
      241 ctatttcaag ccaacagctg cttcaacagc ctgagttgct caactcggca atgctaactg
      301 cgttggtcac taaccacact gagaatgttc aattcttact gcctatttat caacaattac
      361 ccgccagtaa acaaaacagc gaagttgtac aatgggcgga ggcagttaat gccaaagcaa
      421 aacaaaatta ttcagaggca ataaaaggct accgtcagct actggcaaaa taccctgaaa
      481 atcagccaat ccgtatgcaa ttagcggttg cattgtttga aaatcgggaa aatgaagccg
      541 cagaggctca attttataag ttacaagcgg acaaattacc gcaagaaatt gcaaatgcgg
      601 tcaatagcta tttggaggcg attggcaagc aagatcaatg gagttttcaa ggcggcttaa
      661 cctatttgaa tgacccgaat atcaacaatg ctccaaatgc aggcacgacc tatggcaact
      721 ggactgcacc gaaaaaagaa tccgcccaag gggtcggctt tcactttgag gcggataaaa
      781 agtggtcttg gggcaatggt ttcttccacg agtttcgttt aaacggaaac ggcaaatatt
      841 actggaataa caaaaaatat aacgaatatt cgctcagaga aagcctcggc ttgggttatc
      901 aaaatgcaaa acaaaaaatc accttgttgc cgttttttga gcagatgtgg tatgccggtg
      961 gctcaagcca aaccgaaagc accaaacgct actccaacgc aggcggtgtg aatgcccgct
     1021 ggcaatattg gattactcca cagtggcaat ctgcaatcag ctacgaatat gcggaacagc
     1081 gttacactcg ccgccaacat ttagacggca attatcattt tattgccccg agcctctatt
     1141 tttaccctaa cagccggcaa tattggtttg tgggggcgaa ttttaaccgc accagccccc
     1201 gtgatttaga tgatagcttt attcgccgag gtgtttctat tggttgggga caagagtgga
     1261 aaaacgggct ttcaacccaa ttaagtgcca gctacgcccg caaacaatac cgagccccaa
     1321 tgccgatttt ccaaattaca caacgtaaca gtgaatatgg tgtgcaagcc agcatctggc
     1381 acagagcctt gcattttaag ggtattaccc ctcgcttaac gtggcaatat aacaaggtaa
     1441 aaagcaatca tagcttctat agttatgaca aaaaccgtgt ctatattgag ttttcacata
     1501 cgttctaaac aaaaacgccc cttaaacggg gcgatttctt agttattttt tcaatttacc
     1561 ccaacaattt tttcaagcga tacaactcgt ccaaagcctg tcttggggta agttcatcag
     1621 gctgaagggc tttcagggct ttttcaactt cattttctac tacaagcggt tgaattgctt
     1681 catttttttg caaatcaaaa ccatcggaaa acaacaaatc cgcctgtgga tgttcgtttg
     1741 cttgtttggt ttggtgggaa atttcctcca aatgtgccaa acgctgcttt gccagttgaa
     1801 tcacttgctt tggcacaccc gccaaggctg ccaccgccaa gccgtaactt ttgctggcgg
     1861 ccccctcttg caccgagtgc ataaacacaa tactgtcttg atgttcacgc gcgtctaaat
     1921 gcacatttgc cacccctttg agctgattcg gcaagccggt aagttcaaaa tagtgggttg
     1981 caaacaaagt gagtgactgg gttttcttcg ccagccattc ggcacacgcc cacgccagtg
     2041 ataagccgtc ataggtagaa gtgcctcgcc cgatttcatc aatcagcaca aggctgtttt
     2101 cggtggcttg atgcagaata ttcgccattt cggtcatttc caccataaag gttgaacgcc
     2161 ctgaagctaa atcatcgctt gccccaattc gggtgaaaat acggtcaatc gggccgattt
     2221 ccgcactttc tgccggcaca aaactgccga tatacgccat caatgtaatg agggcaattt
     2281 gccgcatata ggtgctttta ccgcccatat tcgggccggt cacaatcaat aaatgccgtt
     2341 gggaatttaa aaacaccgga ttggcaataa acggctcggt taaaacctgc tccaccaccg
     2401 ggtgtctgcc gcctttaata ttcaccattc gcatcgggct aaagctcggg caaacatagc
     2461 ctaaactatc agctcgctcg gcaaggttgg ttaagacatc aagttcagac agcatcatcg
     2521 ccgctaattg caattcgcct aagcgaggca ttaacacatc aaacagttca tcataaagct
     2581 gtttttcaag ggcaagcgat gccccttttg ctttcagcac tttgtcttcg taagttttca
     2641 gctcagggat aatataccgc tccgcatttt tgagcgtttg gcggcgaaca tagtgaatcg
     2701 gggctttgtg tgcttgccct tggctgatct gaatgtaata gccgtgaacc gcattaaagc
     2761 cgattttcag cgaatcaatg ccggtgcttt cacgttctct gatctccaaa ttttccagat
     2821 attgcgttgc cccgtccgaa agttgccgcc attcgtcaag ctcggcatta taaccttctg
     2881 caatcacccc accatcacga atgagttgtg gtgggttttc gataatcgcc cgctccagca
     2941 aatcgtgtaa cgggctgaaa tccgccagtt gagccaaaag ctgatcgata ctagcggtca
     3001 gattttgtga attttttgca atttccggta actgagccaa tgcagtgcgt agtcgggtga
     3061 ggtcacgagg gcgagccgta cgcaacgcca ctcgggcgag aatccgctcc atatcgccga
     3121 cttgttgtaa taacggctgt aaatccgaca ttcgctcata ttgtatcaat gctgttatcg
     3181 ccttttgtcg ggcttgtaat ttaccacaat ctcgaatcgg ctgatgaatc caacgcttga
     3241 gcagacggct ccccattggg gtcacacatt tatctaacac cgccgccagc gtgttttccg
     3301 tgccacccgc taagttttgg gtcagctcta aattgcgacg agtagctgca tcgagcaaaa
     3361 tagtatcgct atgttgtgcc aaatgaattg cgttaatgtg cggtaaagcg gtgcgttgcg
     3421 tttcttgggc ataatgcaag acacagccgg cagcacaaag tgccaccacc gctttttcca
     3481 ccccaaatcc ggcaagtgtt tgcgtgccga attggcgatt tagcagctga atcgccgtta
     3541 ccagctcaaa ttcccacacc ggacggcggc gtaacccttt gtaattcgtt aaaattgagg
     3601 cagcggaaaa atcttccgca tacagaattt ctgccggttg tacacgttgt aactcggcgg
     3661 atagagcctc tttgctagca agttcactga ttaaaaaccg cccggaggtc atatctagcg
     3721 tagcaatcgc aaatgtgcct ttttcttcgt aaactgccgc caccaagtta tcttggcgtt
     3781 cgggtaacaa tgcctcatcg ctaactgttc ccggcgtaac aatccgtacc actttgcgtt
     3841 ctaccggccc ttttgaggtt gctgggtcgc caatctgttc acaaattgct accgattccc
     3901 ccaacgccac caatttcgcc aaatacccct ccactgcgtg ataaggcaca cccgccatcg
     3961 gaatcggctc accggcagat tgccctcgct tggtgagcga aatatccaac aatgctgccg
     4021 ctcgtttcgc atcatcataa aacagctcat aaaaatcccc cattcggtaa aacaatagta
     4081 tgtccggatt ttgagctttg agttgcaaat attgttgcat cattggcgta tgggtggaga
     4141 aatcttgtgt catcagtcta tttattgtga gaaatcattg ctgatagttt aacagattca
     4201 gccaagggat aaaaacaagc ggtcattttt cgctgaaaat ttgcaatggt cagccgctgt
     4261 ttttttgtta caatgcacca aatttttaaa acagaggtca gaatgttaag aaaaatagtg
     4321 ctactttcta caggcttatt attggcggct tgtagcagca atgaaccgca acaaccggaa
     4381 gcattcccgg gcgaatttgc caatgccgat tatgtgcttt cggaagaaaa tgctcaaaaa
     4441 tgggtaattg ccagcgaaca ggcaaaacag tgtatctacc ccaatttaac ccgtattcag
     4501 caagagcatt tttccaaaga agattcttat attttctcac aatatgtatt tttctatccg
     4561 cttgaagaga ttatcgggga gcagtatgta aaaatcattc aaaatgatga aaaatcaatg
     4621 ggttacgctc aatatttatt caaaaaactg aaaaataacg aagcggttga agcgttaccg
     4681 aaaaaacaat gtgcgacctt acgcaccaat gcaaaaaatg atttggcagt ggtaaaaggg
     4741 cagtatcaaa gcggtatgat cgaagaaacc aatagccaag aagggaaatc aggcgataaa
     4801 gttgccacca atgataataa attcttcttc gatattatca aatggggcag tatgttactt
     4861 ctctagtgag cctcaatact cggttgtttt aaccacaacc gagccattta tacctaccga
     4921 ttgaactttt atctaaagcc tcagtcttaa aatacagttt ttttcaatta ttttccctct
     4981 tttatattta aggattttca ataaaagcat taaaaacatt attagcattg ggcgtggcaa
     5041 tggctgtttc agctacttca tttgcacaaa ccactcaacc tactgcggct gaacaaatga
     5101 acgcagttaa agcctctgtt gccgaaaaag caactgtggc taaagaagca acaaaagaga
     5161 aagcagcgga gttaaaagcc ggttctgcgg aaaaaatggc gatagcaaaa gccaaaaccg
     5221 aatcatttaa agattccgct aaaaacaaaa tggacgcagt aaaagccacc acagcagaaa
     5281 aaacggacgt gattaaagcg aaagccgcat ctgcaagcga cacaatgaaa gtgaaagctc
     5341 aggaagcaaa agccgccacc gcagagaaag ctgcaactgc tcatgaaacc ttaaattcag
     5401 ccaaaaccgc aaccgctgaa aaagcggcct caatgaaagc agctgcaaca gaaaaaatgt
     5461 cagcagtgaa aaaatcacaa aaagtgaata tcaacactgc caacgaagag caattacaat
     5521 cgcttaccgg cattggtgaa gcaaaagcca aagcgattgt agaataccgc aaaaaacacg
     5581 gtaaaatcaa aaatgcagca gaactggcga acattcccgg cattggcgat gcaaccattg
     5641 agaaagttgc tccatattta actttctaat gttctgcaag cggttatttt gttgcaaaat
     5701 tttgcagaaa aataaccgct tgttcatttc acaccttgta ttcttaaatt tcacccccat
     5761 taagtgaatc gtatttcttt caatacagta ttcaataaac tcaaaaggaa cagaaaatgg
     5821 cattagattt caattcagtt ggattagatt cagtagaagc aaaaggcggt tacggcatcg
     5881 gtttacaaat tggtcagcaa cttttaggca gcggaatgga cgtaaacgca gaaaccgttg
     5941 cccgtggtat ttatgatgtg ttaaacaaca atgagccggc aatcgacatc aatgaagtga
     6001 ccgctgcatt acaagaatta ggtcagcgtg cggaagcggc tcaagcagaa gcattcaaag
     6061 cgattgatgc cgaaaacaaa gcgttcttgg aagagaataa aaaagcaaac ggtgtaatcg
     6121 ttaccgacag cggtttacaa tatgaaattt taaccgaagg cacaggcgaa aaaccgactg
     6181 cgacttcaac cgtgcgtgtt cactacaccg gttcattaat tgacggcacc gtgtttgaca
     6241 gctcggtaaa acgcggtcag ccggcagaat tcccggtaaa cggagtaatt cgtggttgga
     6301 cagaagcatt gcaattaatg ccggttggct caaaatggcg tttaaccatt ccacaagaat
     6361 tagcctacgg cgaacgtggt gcagaagcat caattccacc atttgcgacc ttagtgtttg
     6421 aagtggaatt gcttgatatt ctctaatcaa actcaaataa aaaacctgtg gaggcatttc
     6481 acaggttttt gctatttaag ataactatat tatgcagaaa aaatcactca tatctcgctt
     6541 acttaaaaat attttcctct acggcagcct gtttatcatt attagcctgg tggttgattg
     6601 gtatcgctcg ccctccgctc cggcacaatt tgagcaaacc gtgcattatg atattcaaca
     6661 ccagccgaaa gtaatcgccc aattaagcca cgagaagccg atgctactct atttttgggg
     6721 aagttggtgc cactattgcc aagtggtttc gccaaatatc caacaattag cgaatgacgg
     6781 cacggaagtt ttaggtgttg ccctgaaatc cggcgatgaa aatgacgtac aagcctatct
     6841 caatgaaaat ggctacactt tcgctacttt gaatgaccca agcggtgatt tctctcgagg
     6901 ttggaacatt caagccaccc caaccatctt gattatcaaa gacggtaaaa tcgcccacca
     6961 caccaccggc tacactagct atttgagctt aaaattcaga ctatggctgg cagacgtgtt
     7021 gtattaaacg attcctttca tttgcaaaaa aatccactaa atccgaccgc ttgtttacac
     7081 caaaaagaca agcggtacta aattcattgt catcattgtg gtgatcgata aaatcagcct
     7141 cgatgagcca aaaataaagc ctcggttttt gccgttgtcg aatttcacca gtaaatttgc
     7201 cattgctgtg agggcgtaca cttccaccac cgtaaaaatc acggtgtaaa tataggcagc
     7261 ggtcagagtt gcgactttta ccgcaataaa ccaaggggca ataatcgcca ccgctaataa
     7321 cggcgaaatc caaattaatt gctgtttggt gaggttgatt ttacgagaaa aagtcgattg
     7381 caaactgacg gttaaaacac cgttgatgaa taacgcaatc ggcgaatgct ccggtgcgtg
     7441 caggacattg tcgaataaat acggaaaaat cactcagcgg cacaaatagc attaagtgag
     7501 cgaacaaaaa ctctttgttg atgatttcct taatttgtgc gaaacgaaat ttcacgccgc
     7561 cattcacgcc ttccaccgaa taaaacggct tgaccataaa cgcaaacaag ccggcttcca
     7621 aaataaagca gatccaaatc agcgtttcaa tcatctcaaa cctaataaac ggaataataa
     7681 tcagcggggc gagcattgaa gacatactgg tgacttttag atatttgcct tgtaaacggg
     7741 ttttagcagc atattcatcg ccggcaatcg ccagtaaaca ggctctggca ttagtgccga
     7801 ataagcaact ccccaaccca aagcaagtgg ttgccaacaa taaaatgagg taattatccg
     7861 ctgctaaaaa cagcatatag gcaaccacat ctaataaaca gcccaataac atcatttttg
     7921 ccaagccgta gcgatccccc caaatgccgg ctaaaattgc caatgcctga ttacaaaaca
     7981 acagcaatga aaggaaaaaa gcgatttggg cgttatctag ccctttctct tttaaataaa
     8041 agaaaagggg ctgtcctaga taactaacct aaactaccct taaccaattg ttttaaaaag
     8101 gatatttgag attttaagtc actgtgatta aaacgccatt cgcattcttt caaatacagc
     8161 tcaaaatgca ctttgggaat gccgttaaac ttacgcaaat ggcgttttgc ttggctccca
     8221 aaattctcaa ttccattaat gtgattttga ttttcagcga agtgtgtgct gtgattaatg
     8281 cgaaaatggt taaattcact cacatcaagc acatcataac ttcgatagaa atcggtgtaa
     8341 acaatactat cgggtttcac cttttcccga ataatcggca aaagtgtggc aaattgcgtg
     8401 tttggtacta ccacggtata aacctttccg tcccgcttta aaagcccgaa cacggcggtt
     8461 ttgcctgctg caccacgtcc acgtttacct ttacgatgac cgcctaaata actctcatca
     8521 acctcaattt ctccctcaaa catttccaaa tgagggctat gttgatagat aagcaaccgc
     8581 aagcgatgga agtaatacgc cgccgtgttt ttgtttacat tgaccaactc agatgctgtt
     8641 cgggctgtta cccctgcaac aaactgctca atgagtttgt tttgtttgta ctgacttaga
     8701 cgactttttc tcatttgggt atcttaacct aaatggagtt tttagtcgtt atctaggaca
     8761 gccccaaaga aaaacacgct ttgcattgaa aaaaaggcgg tggtggaaat aaaacggcgt
     8821 aggagtaata gtttttctaa agacattcag aatggttgaa ttggttaaat aaagagcggt
     8881 tattctacct tttaagtcaa ccccaatcaa tcggcttttg ttttaccttt ggcgtgggtt
     8941 tcggtatgat aagcgatatg tagtggcggg tcctgtgccc gcctaaatac caatgataac
     9001 ttgcgggcga gcacaggact cgcccctacg ataaacaaga aaatgaaaga caccattgtt
     9061 gctcaagcaa caccgattgg cagaggcggt gtggggattc tgcgagtttc cggtccgctt
     9121 gccgaaaccg ttgctcaagc cgtattaggc aaaacattgc caccccgtat cgcaaattat
     9181 ttgccgttta aagacgaaga tggcactgtg ttggatcaag gcatcgcctt attttttaaa
     9241 gctcccaact cctttaccgg cgaagatgtg cttgaacttc aaggacacgg tgggcaggtt
     9301 attttagatt tactgctcaa acgcatttta caagttaagg ggctacgcat tgcccgagca
     9361 ggtgaatttt ccgaacaggc atttttaaac gataagctcg accttgccca agctgaagcg
     9421 attgcggatt taatcgacgc caccagcgag caagccgctc gttcagccct gaaatcacta
     9481 cagggtgaat tttctaataa aatcaatgcg ttagttgatt cagtaattta tttacgcact
     9541 tatgtggaag cggcgattga cttccccgat gaggaaattg actttctggc agacggtaaa
     9601 atcgaggcaa aattaaatga gattatcgct caattagacg gtgttcgccg tgaagcgaaa
     9661 caaggctcga ttctgcgtga aggaatgaaa gtagtgatcg ccggtcgccc gaatgcaggg
     9721 aaatcaagct tgcttaacgc cttagccgga cgagaggcgg cgattgtaac caatattgct
     9781 ggcacaaccc gtgatgtgtt gcgtgaacat attcacattg acggaatgcc gttgcatatt
     9841 atcgacaccg ccggtctccg tgatgccagt gatgaggtgg aacgtatcgg cattcagcgt
     9901 gcttgggaag aaatcgccca agccgaccac gttttattaa tgattgacag caccgagcaa
     9961 caagccgatc agttccgaca agagtgggcg gaatttctag ccaaactgcc ggcaaatatg
    10021 cctgtgaccg taattcgcaa caaagtcgat ttatccggcg agcaggaagg cttaattcag
    10081 gtggacgatt tcacgatgat tcgcctctct gcccaaacca aagtcggcgt tgatttattg
    10141 cgtgaacact tgaagaaatc aatgggctac caaagttcta cggaaggcgg attcttggct
    10201 cgccgccgtc atctgcaagc attggaaacc gctgccgagc atttagagcg agggcatatc
    10261 cagcttactc aattcttagc cggcgaattg ttagcggaag agttgcgtat ggtgcaaaat
    10321 gccttaagtg aaattaccgg ccagttcacc tctgatgact tattaggcaa cattttcagc
    10381 tcattttgca tcggtaaata aatggcactt tttaaccgct ttcaaaccca gtgtgcaacg
    10441 catttgccga accaaaccgc ctttttaatc ggcttaagcg gtggggtgga ttcggtggta
    10501 ctactccacc tttttgcccg cacctcattt cacgttaggg caatttatgt ccaccacggg
    10561 ctaagcccaa atgcggacga ctgggcagcc ttttgcgaac aatattgcaa gcggttaaat
    10621 attcccttta ttttacaaaa ggtcagagtg gatagctcaa acggcgttga aaacggggcg
    10681 agagaagctc gttaccaagc cattcaacaa cagcttaagc ccaatgaagt gttcgccacc
    10741 gcccaccatt tagatgacca agccgaaact tttttgctcg ccctcaagcg aggcagtgga
    10801 gtcaaaggat tatcggcgat gcaagcggtc acttttttgc aaaattttac cgtttttcga
    10861 ccgctactca cttttactaa gtcagatttg atgggttatg ccgttcaaca tcagctaggt
    10921 tggattgagg acgaaagcaa tgccgataac cgttacgacc gtaatttcct tcgcaatagc
    10981 atcttgccac tactcaatca acgttggcag cacttcagcc aaatggttgc ccgttccgct
    11041 cagcattgtg cagaacagca agccttgata gaagagctat taagcaatga actcaagtca
    11101 agaacagggg aaaaacaaca actcaacatt aacggctttg ggcaattttc acttgccaag
    11161 caacagcaac ttagccgcct ttggctggaa caaaacggag tgagaatgcc aagccaagcc
    11221 cagctacaag cggtcatttc tgaactgatt tttgcaaaag ccgataaaaa cccacaggtt
    11281 aaagtcggcg aaaatattat cagacgctat caacaagcta tttacgttac cgaagagatc
    11341 gccgacattc cgccgtttga ggtagtactt cccacagaaa ccaaagtgga attaccctat
    11401 cagctcggta ctattattcg ccaacaacaa gagatcattt gcaaaaaaaa cgggaaaaat
    11461 caccgcttgc aactgcccca agagctggct caatcaacta tttctattaa aatcgggcaa
    11521 ctaggcaaag taaaatgcta cggcaaggct caacgggaag aaatgaaaaa gatttggcaa
    11581 aatcacggca tacctgtttg ggaacgcaac cgtacaccgc tgattttttg gcaagacgaa
    11641 ttagttggcc tattacctat cctctagggt gaaattgctg atgaagcgat ttcaaacggg
    11701 cttttgccac ttgagtgtaa atctgggtgg tcgataaatc actatgcccc agcaacatct
    11761 gtaccactcg caaatcagcc ccatgattga ccaaatgggt cgcaaaggcg tggcgaagca
    11821 cgtgaggcga gagtttatct gcatcaatac ctgcaagcac ggcatagtgc ttaatccgat
    11881 gccaaaacgt ctgccttgtc atctgctgac ctcgccggct cggaaataca acatcagact
    11941 gctgattatt cagcaaaata gggcgaccgt actggaaaaa ctcctgtatc caataattcg
    12001 cctcctcgcc caatggcact aaccgctctt tatccccttt accgataatt ctcaccaccc
    12061 cttgtttgag gctgatatta tccatcgaaa gcgacaccag ctccgttacc cgcagaccgg
    12121 tggcatacag cagctccagc attgctttat cccgtaactc tatcggatct aacgtattcg
    12181 gggcatctag caaatccatt acctgatctt cacttaagga tttgggtaaa gaagcacccc
    12241 gtttagggga agaaagggtt aaagtcgggt catcttggcg ataatgctca aggcataaaa
    12301 aacggaaaaa tttccttaaa caactcaaca ttctggcaga gcttgtcgcc ttatagcctt
    12361 gctccaaacg ctcgccgaga aaaccttgta agtcgatatg atcgagagac agaaatgctt
    12421 taggttcaga aaaataatcg gaaaaacgct ctaagtcaga acgataagag gcaacggtat
    12481 tttcagacaa accgtgttct tgccatagtg tatcgagaaa ttgttcaata atagggtcaa
    12541 gctcagccat acaagcgggt atattttcag gaaattttgc aaattttaac agaattaaat
    12601 ctataaaaat acaaaagcga tagaaacgaa aaaaccgatt agcttatgct aatcggttta
//
LOCUS       DANMBQ010000068        12637 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.068, whole genome shotgun sequence.
ACCESSION   DANMBQ010000068 DANMBQ010000000
VERSION     DANMBQ010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12637
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.068"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            1..170
                     /locus_tag="PXE92_001598"
                     /pseudo
     CDS             1..170
                     /locus_tag="PXE92_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021111752.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            422..1612
                     /locus_tag="PXE92_001599"
     CDS             422..1612
                     /locus_tag="PXE92_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000616649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HDL5760833.1"
                     /translation="MSTSQQLIQQTEHFGANNYLPLPIVISKAKGIWVEDPEGNRYLD
                     MLSAYSAVNQGHCHPKIVQALKDQADKVTLTSRAFYNDQLGIWYEKICKLANKEMALP
                     MNTGAEAVETAIKTARRWGYDVKGIAENQAEIIACVGNFHGRTMAAVSLSSDPDYKRG
                     FGPMLGGIKLVPYGDLEALKAAITPNTAAFLVEPIQGESGILIPPEGFLEQAYELCKE
                     NNVLFIADEIQAGLGRTGKLFATEWEGFEPDIYILGKALGGGVFPISCVLANRDILGV
                     FNPGSHGSTFGGNPLACAVSIASIDVLLEEKLAERSRELGEYFLAELKKIQNPIIKEV
                     RGRGLFIGLELHQPARPFCEKLKEKGLLCKETHDTVIRFAPPLVIEKFNLDWALEKIR
                     EVLA"
     gene            1687..3198
                     /gene="nhaC"
                     /locus_tag="PXE92_001600"
     CDS             1687..3198
                     /gene="nhaC"
                     /locus_tag="PXE92_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL5760834.1"
                     /translation="MLILQTFSKNQPLVKGGFMSNRTEITDQNIRIPFRYAILPVIIM
                     VSIMAVAIIKFEASPHVPLLIGAISAAVIAMAHGYRWETIEKGIYRGIRMALPAIVII
                     IMIGLTIGAWLGGGIVATMIYYGLKLISPSLFLVTISIICAIVTLAIGSSWSTMGTIG
                     VAAMGIGFSLGIPAPMVAGAVISGAYFGDKMSPLSDTTNLAAGITETNLFEHIRHMFI
                     TTVPAFLIALSVYFYFGMEFRAENLDLAKIEDIMQAMQEHFLISPWLLLVPLLVVVLV
                     AKKVPALPALAAGIILGWLCHVFVQGGDVSVAVITLHDGYKIESGHEMIDKLFNRGGI
                     ESMMYTISLTIVAMTFGGIAEQAGMLHSVVEKILTLAKSAGSLISATIVSAFITNVTT
                     SEQYISILLPGRMYIKAYRDKGLSSRNLSRALEDGGTVTSVLVPWNTCGVYAFSMLQV
                     SAFEYAPYAIMNWLIPLIAIGLATLNIKIERLPPEELAKEPEEITLPKRGCCP"
     gene            3315..6914
                     /gene="putA"
                     /locus_tag="PXE92_001601"
     CDS             3315..6914
                     /gene="putA"
                     /locus_tag="PXE92_001601"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HDL5760835.1"
                     /translation="MMSYQLLPNTTIRPELSRHYRFDEQTLVQNLIEQAHCDEQADNI
                     KKLTTQLVGKVRTARQKASGVDALMHEFSLSSQEGVALMCLAEALLRIPDTATADKLI
                     RDKIAKGDWRSHTGNSPSLFVNAAAWGLVITGKLVSTHSESSLSSALSRLIAKGGEPL
                     IRKGVDVAMRMLGKKFVTGETIQQAIKNGEKRFAMGYRYSYDMLGEAALTAEDAKRYY
                     NDYVASIHAVGATSKGLGVYKSSGVSVKLSAIHPRYSLSQHQRVMDELYPRLKELFLL
                     AKKYDIGLNIDAEEADRLELSLDLMDRLLADPDLAGFNGIGFVVQAYQKRCPYVIEHL
                     IETARKHNRQLMIRLVKGAYWDTEIKRAQMDGAEGYPVFSRKVHTDLNYIVCAKKLLA
                     AQDVIYPQFATHNAQTLATIYHLAQGKRFEFQCLHGMGESLYDQVVGSDNLNVQCRIY
                     APVGTYQTLLAYLVRRLLENGANSSFVSQIVDENLSVDDLAQAPVQKAELTNGTMHPK
                     IPLPVDLFDDNRVNSKGYDLTDAVSLQNLENALNELTKQHYRAEPQLANDNTSGQESR
                     KIYNPANQAELVGEVIDATENDMEQAFESAAAFQSEWANTSPAVRAECLEKMADLMEA
                     NMPQLFDLAVREAGKTLNNAIAEVREAVDFCRYYAKEVRNNIEAYKNPRGIVVAISPW
                     NFPLAIFVGEVSSALVAGNVVLAKPAEQTSLMAHYAVSLFYQAGVPKAALQCLPGRGK
                     TVGVALVADHRVNGVIFTGSTETAKNINRNLHKNEKIIPLIAETGGQNAMIVDSSALG
                     EQVVIDVLNSAFDSAGQRCSALRVLYLQRDVADHILTMLKGAMAELKVGLPQHLTTDV
                     GPVIDKVAQQRLLDHIENLKKSAKSYYQVAISSEIAENGIFVPPTLLEIDHISQLKHE
                     VFGPVLHVIRFDADKLDQVIADINSTGFGLTSGLHSRIDETVDLWLKSVHAGNLYVNR
                     NTVGAVVGVQPFGGMGLSGTGPKAGGPLYLQRLVNRQEWTLNGLQGNAQAVDFDLNFA
                     IRKVLSGAEQQTALDLAKSLARRSPLGKTYPMQGITGEKNEMIFVARPQIGISKGNLA
                     SQVQALIAIVTVGSQAVAEKSSELAKHASAFGKKLQVVDDFNSLDHLSTLIVLDLLSS
                     EEKLHHAERKGAILTYIEGLDLALSLLPLVHEKAISINTAAAGGNASLMSEMD"
     gene            7023..7673
                     /locus_tag="PXE92_001602"
     CDS             7023..7673
                     /locus_tag="PXE92_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha3 family transposase"
                     /protein_id="HDL5760836.1"
                     /translation="MRKSRLSQYKQHKLIELFVAGVIARTAAELVNVNKTTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEIDESYFGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVV
                     VPNTQSATLLPIIREKVKPDSLVYTDFYRSYDVLDVSEFNHFRINHSTHFAENQNHIN
                     GIENFWSQAKRHLRKFNGIPKAHFELYLKECEWRFNHSDLKSQIFLLKQLVKGGLG"
     gene            complement(7674..8561)
                     /locus_tag="PXE92_001603"
     CDS             complement(7674..8561)
                     /locus_tag="PXE92_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide transport protein"
                     /protein_id="HDL5760837.1"
                     /translation="MNKLTQLALISLAFTGSAFAAPKSFTYCLESSPAALNPQIATDG
                     ATLDVGQAIYNRLIDFEKGTTNLTPSLAERWEISEGGKIYTFFLRQNVQFQSNKSFTP
                     SRYFNADDVIFSINRQFDKTNPYHKLSGGNYEFFYGMNMQNIIKNVTKVDDYTVKIEL
                     SEPNAPFLANLAMDFMAIFSAEYANKMQIAGTPEKLDLEPIGTGAFQFYGYQKDAAVR
                     FTAFEHYWEGKAKIDRLVFSITPDASVRLAKLEKNECQAMPYPNPSDLSALKANKDIQ
                     LFEKSGLNIGYITFRGCPR"
     misc_feature    complement(8587..8732)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(8909..9919)
                     /gene="mglC"
                     /locus_tag="PXE92_001604"
     CDS             complement(8909..9919)
                     /gene="mglC"
                     /locus_tag="PXE92_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HDL5760838.1"
                     /translation="MSALQQNRTLDFFKQNAIYFVLLILLIVIIVQDPSFLSLRNFSN
                     ILSQSSVRLIIALGVAGLIVTQGTDLSAGRQVGLAAVISATLLQSMENMNKVFPNLSE
                     IPIPVVVLTVCAIGAVIGLFNGFVVAYLNVTPFIATMGTMIIVYGINSLYYDAVGSSP
                     IAGFSDDFSTFAQGFFRFGDFRLSYITIYAVIATIIMWTLWNKTRFGKNVFAIGGNPE
                     AARVSGVNVPLNLMGIYMLSGIFYAFGGMLEAGRIGSATNNLGFMYEMDAIAACVVGG
                     VSFAGGVGTIIGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIILAVAIDSLKYAK
                     KK"
     gene            complement(9933..11432)
                     /gene="mglA"
                     /locus_tag="PXE92_001605"
     CDS             complement(9933..11432)
                     /gene="mglA"
                     /locus_tag="PXE92_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     ATP-binding protein MglA"
                     /protein_id="HDL5760839.1"
                     /translation="MTGEVLLTMTNVSKSFPGVKALDNANLTVKSHSVHALMGENGAG
                     KSTLLKCLFGIYAKDEGDILFLGKPVNFKTSKEALENGISMVHQELNLVKQVTVMDNL
                     WLGRYPLKGPFVDHDKMYRDTKAIFDELDIDVDPRDKVAKLSVSQMQMIEIAKAFSYN
                     AKIVIMDEPTSSLSEKEVEHLFKIIQKLKDRGCGIIYISHKMDEIFKICDEITILRDG
                     KWVNTVAIKDTSMDQVVSMMVGRELTQRFPEKTNLPKEVILEVEHLTAKNQPSIQDVS
                     FSLRRGEILGIAGLVGAKRTDIVETIFGVREKAGGTIRLNDKEINNRNAFDAINNGFA
                     LVTEERRSTGIYANLSIEFNSLISNMKSYLGKFGLLSNKKMKSDTQWVIDSMNVKTPS
                     HQTHIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDIGAKFEIYQLILELANKDK
                     GIIMISSEMPELLGVTDRILVMSNGKVAGIVETAHTSQEEILQLAAKYL"
     gene            complement(11504..12493)
                     /gene="mglB"
                     /locus_tag="PXE92_001606"
     CDS             complement(11504..12493)
                     /gene="mglB"
                     /locus_tag="PXE92_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL5760840.1"
                     /translation="MKKAVLSAVAMAVALGATISTAQAENRIGVTIYKYDDNFMALMR
                     KEIEKEGKTQKVELLMNDSQNTQSIQNDQVDVLLSKGVKALAINLVDPSAYKTIIQKA
                     KSEDVPVVFFNKDPGAAAIDSYPKAYYVGTEPKESGIIQGELIAKQWKAHPELDLNKD
                     GKIQFALLKGEPGHPDAEARTKYVVESLKAQGIDSEQIFMDAALWDAAQAKDKVDAWL
                     SSGKAKDIEVIISNNDGMALGALEATKAHGRKLPIFGVDALPEALQLIKKGELAGTVL
                     NDGVNQGKAVVQLSANLADGKDAVAGTQWKLENRVVRIPYVGVDKDNLSEFLK"
BASE COUNT         3654 a         2638 c         2695 g         3650 t
ORIGIN      
        1 gaattgagaa tttttggagc caagcaaaac gccatttgcg taaatttaac ggcataccta
       61 aagctcattt tgagctgtat ttgaaggaat gcgaatagcg ttttaatcac agtgacttaa
      121 aatctcaaat ttccatttta aaacaattgg ttaggggttg tttaagttag ttatctagga
      181 cagccctaaa ttttgtagtt ggaatttcaa cggagaaagt tatctataaa cttacaaaag
      241 ttatagaaaa tggaggcatt tttgcttaaa gtatgctatc tattcatatt aattgcatag
      301 ttaatcaaca actgaagaaa aattagaagt agatcataaa atcaacaaaa agtccgtgct
      361 ttttagctaa agattgttaa actcttttgt gttacaagtt tttaacataa aggagttttt
      421 tatgtctact tctcaacaac tcatccaaca aaccgaacat ttcggtgcca ataactacct
      481 acctctacct attgttatta gtaaagctaa aggcatttgg gttgaagatc ctgagggtaa
      541 tcgctatttg gatatgctta gtgcctactc agcggttaat caagggcatt gtcatccaaa
      601 aattgtacag gcactaaaag atcaagcaga caaagtaacg ctgacctctc gagcatttta
      661 taacgatcaa cttggtattt ggtatgaaaa aatctgcaaa ctcgctaata aagagatggc
      721 attaccgatg aatacgggtg cagaagcggt agaaacagcg attaaaactg ctcgccgttg
      781 gggttatgat gtgaaaggaa ttgcagaaaa tcaagcagaa atcatcgctt gtgttggcaa
      841 ttttcacgga cgaacaatgg ctgcagtatc tctctcgtct gatccggatt ataaacgtgg
      901 tttcgggccg atgttaggtg gcatcaaact tgttccatac ggtgatttag aagcattaaa
      961 agctgcgatt acaccaaaca cagcagcgtt tttggttgag ccaatccaag gtgaatctgg
     1021 cattcttatt ccacctgaag gtttcttgga acaggcttat gaactatgca aagagaataa
     1081 tgtgctgttt attgctgatg aaattcaggc aggtcttggg cgtactggca agttatttgc
     1141 aacagaatgg gaaggctttg agccagatat ttatattcta ggtaaagcac ttggtggcgg
     1201 ggtgttccca atctcttgtg tgttagcaaa tcgtgatatt ttaggcgtat tcaatcctgg
     1261 ctcgcacggt tcgacatttg gtggtaatcc attagcctgt gcggtatcta ttgcctcaat
     1321 tgatgtactg ttggaagaaa aacttgcaga gcgttcccgt gagttaggtg aatacttctt
     1381 ggcagagctg aaaaaaatcc aaaatccaat tattaaagaa gttcgtggac gtggactgtt
     1441 tattggcttg gagttacatc aaccagcacg cccattctgc gaaaaactca aagaaaaagg
     1501 cttactctgc aaagagaccc acgatacagt tatccgcttt gctccccctt tggtgattga
     1561 aaaattcaat ttggattggg cattggagaa aattcgggag gtgttggctt aattgtcatt
     1621 ttctctatat tttatcctgc caaatcgcct ttaacccttt ttggcaggaa gcaaaacagt
     1681 tgtaaaatgc tgattttgca aactttttcc aaaaatcaac cgcttgtaaa aggtggcttt
     1741 atgtcaaaca gaacagaaat aacagaccaa aatatccgaa tcccgtttcg ctatgctata
     1801 ttgcctgtga ttattatggt atcgattatg gcggtggcta tcatcaaatt tgaagcctca
     1861 cctcacgttc cgttgcttat tggggcaatt agtgccgctg tgattgcaat ggcacatggc
     1921 taccgttggg agacaattga aaaaggaatt tatagaggca ttcgtatggc tttaccagcg
     1981 attgttatca ttattatgat tgggctaacc atcggagctt ggctaggtgg tggaattgta
     2041 gctacgatga tttactacgg cttgaaattg atctctccgt cgctgttttt agtaactatc
     2101 tcaataattt gtgctattgt gacccttgcg attggtagct cgtggtctac aatgggaaca
     2161 atcggtgtag cggcgatggg gatcgggttt agtctcggca ttccggcacc gatggttgcc
     2221 ggtgcggtga tctcaggagc atatttcggc gataaaatgt cgccactgtc agacactacc
     2281 aatctggcag cagggattac cgaaaccaat ctgtttgaac atatccgcca tatgtttatc
     2341 actaccgtgc cggcgttcct gattgcgtta tctgtctatt tctattttgg tatggaattt
     2401 agagccgaaa atctcgatct tgctaaaatt gaagacatta tgcaggcaat gcaggaacat
     2461 ttcttgattt cgccttggtt gctattagtg cctttattag tcgtggtgtt ggtggcaaaa
     2521 aaagtgcctg ccttaccggc attagctgca gggataattc ttggttggct ctgccacgtt
     2581 tttgtgcaag gcggtgatgt cagcgtagca gtgattactc tgcacgacgg ctataaaatt
     2641 gagagcggcc acgagatgat tgataagctg ttcaaccgtg gtgggatcga gtcgatgatg
     2701 tacaccattt cccttacgat tgttgcgatg acttttggtg gcattgcaga gcaagctgga
     2761 atgttacatt cagtagtgga aaaaatcctt acccttgcaa aatcagcagg tagcttaatt
     2821 agtgctacga ttgtatcggc atttattacc aacgtaacga catctgagca atatatttct
     2881 attttattac caggcagaat gtatataaaa gcctataggg ataagggact aagttcgaga
     2941 aacctttctc gtgcattgga agacggagga acagttactt cggttcttgt accttggaat
     3001 acctgtggtg tttatgcgtt ctcaatgttg caagtgagtg cttttgaata tgcaccgtat
     3061 gcaataatga attggctcat tccactgatt gcgattggct tggcaacctt gaatatcaaa
     3121 attgagcgat tgccaccgga agaattagcc aaagaacctg aggaaattac tctgccaaaa
     3181 cgtggttgtt gtccataatt tatctaaata gtatttaata acaataggtt aagttaaata
     3241 acaagcggtc ggttttatct taaaatttgc aagtttatac ataaatttga tcgcttgctg
     3301 tatagaaagg aaaaatgatg tcataccaac ttttacctaa caccactatc cgtcctgaat
     3361 tgagccgtca ttaccgcttt gatgagcaaa ccctggtgca aaatctgata gaacaagcac
     3421 attgtgatga acaggctgat aacattaaaa agctcactac ccaattagtc ggtaaagtcc
     3481 gaactgcacg ccagaaagca agcggggttg atgcgttaat gcacgaattt tcactctcca
     3541 gccaagaggg ggtggcgttg atgtgccttg ccgaagcatt actacgcatt cctgacaccg
     3601 ccactgcgga taaattaatt cgagacaaaa ttgccaaagg ggattggcgt tcacacaccg
     3661 gcaacagccc ctctctgttt gtgaatgcag cggcgtgggg cttggtgatt accggcaaat
     3721 tggtttcaac ccacagcgaa agctcactct catcagcact ttcacgcctg atcgccaaag
     3781 gcggagaacc gctgatccgc aaaggtgtgg acgtagcaat gcgtatgctc ggcaagaaat
     3841 ttgtaacggg cgaaaccatt caacaggcga ttaaaaacgg cgaaaaacgc ttcgcaatgg
     3901 gttatcgtta cagctacgat atgctgggcg aagcggcact caccgccgaa gatgccaaac
     3961 gctattacaa cgactatgtt gcctctattc acgctgtggg tgccacctcg aaaggcttgg
     4021 gcgtgtataa atcctcgggt gtgtcggtca aactctccgc cattcaccct cgttattccc
     4081 tttcccaaca ccaacgtgtg atggacgaac tctatccacg tctgaaagaa ctgttcttgc
     4141 tggcgaaaaa gtatgacatc ggcttgaaca ttgatgccga agaagccgac cgcctcgaat
     4201 tgtcgcttga tttgatggac agactgcttg ccgaccctga tttggcaggg tttaacggca
     4261 ttggttttgt ggtgcaggcg taccaaaaac gttgcccgta tgtgatcgag catttaattg
     4321 agaccgcccg taaacataat cgccagctaa tgattcgctt ggtaaaaggc gcatattggg
     4381 acactgaaat caagcgggcg caaatggacg gtgcagaggg ctatccggtc ttctcccgta
     4441 aggtgcatac cgatttgaac tacatcgttt gtgccaaaaa attgctggcg gcgcaagatg
     4501 tgatctatcc gcaatttgcc acccacaacg ctcaaactct cgccaccatt taccacttgg
     4561 cacagggcaa acgttttgag tttcaatgct tgcacggtat gggagagagc ttgtacgacc
     4621 aagtggttgg cagcgataat cttaacgtgc aatgtcgcat ttatgcccct gtcggtactt
     4681 atcaaaccct gcttgcctat ttagtacgtc gcttgttgga aaacggagcg aacagctcat
     4741 ttgttagcca aattgtggat gaaaatctca gtgtagatga tctggctcaa gcccctgttc
     4801 aaaaagcaga actgaccaat ggcactatgc acccgaaaat tccattgcca gtcgatttat
     4861 ttgacgacaa tcgtgttaat tccaaaggct atgatttaac tgatgcagta agcctacaaa
     4921 atttagaaaa tgccctcaat gaacttacca aacagcatta ccgtgctgaa ccacagctgg
     4981 caaatgataa tacaagcggt caagaaagcc gaaaaattta caatccagcg aaccaagctg
     5041 aattagtcgg cgaagtgatt gatgccaccg aaaacgatat ggaacaggcg tttgaaagtg
     5101 cggcggcgtt ccaaagtgaa tgggcgaata cttcccctgc ggtgcgtgcc gagtgcttag
     5161 aaaaaatggc ggacttgatg gaagccaata tgccacaact gttcgatttg gcggtgcgtg
     5221 aggcaggcaa aacgctcaac aatgcaattg ctgaagtgcg tgaagccgtc gatttctgtc
     5281 gttattatgc caaagaggta cgcaacaaca ttgaagcata caaaaatccg cgtggcattg
     5341 tagtagcaat tagcccgtgg aactttccgt tagcgatttt tgtgggtgaa gtttcatctg
     5401 cgttggtggc aggcaatgtg gtactagcaa aaccagctga acaaacttcg ttaatggcac
     5461 attatgctgt cagccttttc taccaagcag gtgtgccgaa agcggcgttg caatgcttac
     5521 cgggtagagg aaaaacggtt ggggtggcgt tggtggcaga tcatcgtgtg aacggcgtga
     5581 tttttactgg ttcaacagag acagctaaaa acattaaccg caatttgcac aaaaacgaga
     5641 aaattatacc gcttattgcc gaaactggcg gacaaaatgc aatgattgtt gatagctcgg
     5701 cactgggcga gcaggttgtg atagatgttt taaactccgc atttgactca gcagggcaac
     5761 gttgttcggc attgcgtgtg ctgtatctgc aacgtgatgt tgccgatcac attctcacaa
     5821 tgctcaaagg agcaatggcg gagttgaaag ttggtcttcc acaacactta actaccgatg
     5881 tcggaccagt aatcgataaa gtcgcacaac aacgcttgct cgatcatatt gaaaatctca
     5941 aaaaatcggc gaaaagttac tatcaggtgg ctatctcctc tgaaattgcc gaaaatggta
     6001 ttttcgtacc gccaacgctg ttagaaatag atcatatcag ccagcttaaa cacgaagtat
     6061 tcggaccggt gctacacgtt atccgttttg atgcggataa actcgaccaa gtgattgccg
     6121 acataaactc cacaggtttc ggtctaacca gcggtttgca tagccgaatt gatgaaacgg
     6181 tggatttatg gttgaaatct gtccacgctg gaaatctgta tgtaaaccgt aacacggtag
     6241 gggctgtggt cggcgtacag ccattcggtg gaatggggtt atcaggaact gggccgaaag
     6301 ctggcgggcc gctctatcta caacgtttag taaaccgcca agaatggaca ttgaacggtt
     6361 tacagggcaa tgcacaagcg gtcgattttg acttaaattt tgcaatccgc aaggttctaa
     6421 gtggagctga gcagcaaacg gcgttagatc tggccaaaag ccttgcacgc cgctcgccac
     6481 tcggaaaaac ctacccaatg cagggtatta ccggcgagaa aaacgagatg attttcgtgg
     6541 ctcgcccaca gattgggatt agcaaaggta atttggcttc acaggtgcaa gccttgattg
     6601 ccattgtaac ggtcggcagc caagcggtgg cagaaaaatc aagcgagctg gcaaaacacg
     6661 cctctgcctt tggtaagaaa ttacaggtgg tggatgattt caacagtctc gatcacctca
     6721 gcacactcat tgtgcttgac ctgctttcta gtgaggaaaa attgcatcat gccgaacgca
     6781 aaggggcgat tttgacctac atcgaagggc tggatttagc gctctcactg ctgccgttgg
     6841 tacacgagaa agcaatcagc atcaacaccg ctgccgcagg gggaaatgcc agcttaatga
     6901 gtgaaatgga ttaagcaaca aacaaaagag tataagaggg cagatcacaa tgatctgcct
     6961 ttttatttta aggggctgtc ctagataacg actaaaactt ccatttaggt taagataacc
     7021 ctatgagaaa aagtcgtcta agtcagtaca aacaacataa actcatagag ctgtttgtag
     7081 caggcgtaat cgctcgaaca gccgcagagt tagtgaatgt aaataaaacc accgcagcct
     7141 attattttca ccgtttgcga ttgctcatct atcaacatag ccctcatttg gaaatgtttg
     7201 agggagaaat tgagattgat gagagctatt tcggcggtca tcgcaagggt aaacgaggtc
     7261 gtggtgcagc aggcaaaacc gccgtattcg ggcttttaaa gcgtgacggc aaggtttata
     7321 ccgtagtagt gccgaacaca caatctgcta cacttttgcc gattattcgg gaaaaggtga
     7381 agcccgatag ccttgtttac accgattttt atcgaagcta tgatgtgctt gatgtgagtg
     7441 aatttaacca ttttcgtatc aatcacagca cacacttcgc agaaaatcaa aatcacatta
     7501 acggaattga gaatttttgg agtcaagcaa aacgtcattt acgcaagttt aatggtattc
     7561 cgaaagccca ttttgagcta tatttgaaag aatgcgaatg gcgttttaat cacagtgact
     7621 taaaatctca aatattcctt ttaaaacaat tggttaaagg ggggttaggt tagttatcta
     7681 ggacagcccc taaaagtaat ataaccgata tttaggcctg acttttcaaa taattgaata
     7741 tctttattcg cttttaaagc agacaaatct gacgggttcg gataaggcat cgcttggcat
     7801 tcgttcttct ccaatttagc taaacgtact gaggcatcgg gcgtaatact aaatacaagg
     7861 cgatctatct tcgcttttcc ttcccaatag tgttcaaatg ctgtaaatct taccgctgcg
     7921 tccttttggt aaccatagaa ctggaatgca cctgtgccta taggttctaa atctaatttt
     7981 tccggcgtac ccgctatttg cattttattt gcatattccg cagaaaagat cgccataaaa
     8041 tccatagcta aattagcaag aaagggggca ttcggttcag ataattcgat ttttaccgtg
     8101 taatcatcta cttttgttac atttttgatg atgttttgca tattcattcc gtagaaaaac
     8161 tcatagttac cgccggacaa tttgtgatat ggattcgtct tatcaaactg acggttaatc
     8221 gaaaaaataa catcatcagc attaaaataa cgactagggg taaaactttt attactctgg
     8281 aactgcacat tctgacgcaa gaaaaaagta taaatttttc cgccttcact gatttcccat
     8341 cgctctgcca gagaaggagt gaggttagtg gtaccttttt caaaatcaat caggcgatta
     8401 tagattgctt gcccgacatc aagagtagct ccatctgttg caatctgagg attcaatgct
     8461 gccggagatg attccaaaca gtaagtaaaa gatttaggtg ctgcgaaagc agaacctgta
     8521 aatgctaaag aaataagtgc aagttgtgtc agcttgttca ttgtcatatc cttaaatgtt
     8581 aagcaataaa aaaccctttc aaaagttgcc ttccgaaagg gttagaattg ggtttgcgat
     8641 tttggattgc gtttgccatt tcaggttttc ggaagatatc ttccgaacac gccaaatgcc
     8701 cgaaagatta atcggtcaaa tggtagtgat gatgtttaac gcaatagctc ataatattct
     8761 ccaaaattga atgtttagga atttacgctt tttaaaaatc aattgcaaac gttttcttta
     8821 aaattttgta aaaaattcaa catttttcac cgcttgtatc gtacctagga gcaaatggcg
     8881 atttgctcct aggtttccaa gcaataggct attttttctt cgcatattta agtgagtcaa
     8941 tcgctaccgc caagataatg atgccacctt taataatata ttgccagtaa gggtttactc
     9001 caatataggt taagccgtag ttgataacgg tgaagattaa cacccctgtt actacaccga
     9061 tgatagtacc cacaccaccg gcaaaggata ccccacctac cacacaagcg gcaatggcat
     9121 ccatttcata cataaagcct aagttgttgg ttgcactacc gatacgacct gcttctaaca
     9181 taccgccgaa ggcatagaag atgcctgaaa gcatataaat acccatcagg ttaagcggta
     9241 cgtttacacc ggaaactcgt gctgcttcag ggttgccgcc aatagcaaat acgtttttac
     9301 cgaagcgggt tttattccat aacgtccaca taataatggt agcaatcacg gcataaatag
     9361 tgatgtagga tagcctaaag tcgccaaagc ggaagaagcc ttgtgcaaag gttgagaaat
     9421 catcgctaaa gcctgcaatt ggcgatgagc ctactgcatc gtagtaaagc gagttgatac
     9481 catacacaat aatcattgtt cccatcgtgg caataaacgg tgttacgttg aggtaagcca
     9541 ccacaaagcc gttaaataaa ccaatgacag caccgatggc acacacggtt aatacaacca
     9601 caggaatcgg gatttccgag aggtttggga ataccttgtt catattttcc attgattgga
     9661 gcaaggtggc ggaaattacc gctgccaagc ccacttggcg accggcagat aagtctgtcc
     9721 cttgtgttac aatcaagcct gcaaccccta atgcaataat caaacgcaca gaagattgcg
     9781 ataaaatgtt actgaagtta cgcaagctca agaaacttgg gtcttgcaca ataatcacaa
     9841 taagtaagat taataatacg aagtaaatcg cattttgttt aaaaaaatcg agtgttctat
     9901 tttgttgtaa agcagacata cttcactcct tgttataaat attttgctgc gagttgcaag
     9961 atttcttctt gcgaggtgtg agcggtttcg acaatacctg caactttccc gttactcatc
    10021 actaaaattc ggtctgtgac cccaagcaat tccggcattt ccgatgaaat cataatgatg
    10081 cctttatctt tattcgccag ctctaaaatc aactggtaaa tttcaaattt tgccccgata
    10141 tcgataccac gggtcggctc gtcaagcatc aagatttcag gctgggttaa caaccaacgc
    10201 ccgataatca ctttttgttg gttaccgccg gaaagtgagc caatatgcgt ttgatgcgat
    10261 ggggttttta cattcatcga atcaattacc cattgggtat cgcttttcat ttttttattg
    10321 ctcagtaagc cgaacttgcc tagataagac ttcatatttg aaatcagaga gttaaactca
    10381 atgcttaagt tggcataaat ccctgttgaa cggcgttctt ctgtaaccaa tgcaaagccg
    10441 ttattaatcg catcaaaagc gttgcggtta ttgatttctt tatcgtttag tcggatagtg
    10501 ccgcctgctt tctcccgtac accgaaaatg gtttcaacaa tatcagtccg ttttgctcca
    10561 actaagccgg cgatgcctaa aatttcccct ctgcgtaagc taaagctgac atcttgaata
    10621 gagggttgat tttttgccgt taaatgctca acttcaagaa tcacttcttt cggcagattg
    10681 gttttttcag ggaaacgctg ggtcagctca cgccctacca tcattgaaac cacttgatcc
    10741 attgaggtat ctttaattgc aacggtgttt acccatttac cgtcacgcaa aatggtaatt
    10801 tcatcacaaa ttttaaaaat ttcgtccatt ttgtgtgaaa tatagataat gccacagcct
    10861 ctgtctttca gtttttggat aattttaaat aaatgctcga cttctttttc tgaaagtgac
    10921 gaagttggtt cgtccataat cacaattttg gcattgtaag agaaagcttt tgcaatctcg
    10981 atcatctgca tttgtgaaac cgataatttg gctactttat cacgtggatc aacatcaata
    11041 tctaattcat caaaaatcgc cttagtatca cgatacattt tatcgtgatc tacaaaaggc
    11101 ccttttagtg ggtaacgacc tagccataag ttatccatta ccgtcacttg ttttactagg
    11161 ttcaactctt ggtgaaccat tgagatccca ttttctaacg cctcttttga ggtcttaaaa
    11221 ttcaccggct tgccaagaaa gagaatatct ccctcatctt tagcataaat cccaaataag
    11281 catttcagta acgttgattt acctgctcca ttctctccca ttaaggcgtg aacactatgg
    11341 gatttcaccg ttaagttagc attatctaag gcttttaccc cgggaaatga cttgctaaca
    11401 tttgtcattg tgagtaaaac ttcacctgtc atatctcacc cctgattaca tcgaaaaatc
    11461 gaaaaaaagc acgggtatcc atcacccgtg ctaaaagcgt gaattatttt aaaaattcag
    11521 ataagttgtc tttatcgaca ccaacgtaag gaatacgcac cacacggttt tccaatttcc
    11581 attgtgtacc agcaactgca tctttaccgt ctgctaagtt agcagaaagc tgaacaaccg
    11641 ctttaccttg gtttacacca tcatttaata ccgtaccggc taattcacct tttttgatta
    11701 attgaagtgc ttctggcaat gcatctacac cgaagattgg taattttcta ccgtgagctt
    11761 tggttgcttc taatgcacct aacgccatac catcattatt agaaataatt acttcgatgt
    11821 ctttcgcttt accacttgat aaccaagcat ccactttatc tttagcttgg gctgcatccc
    11881 ataatgctgc gtccataaag atttgctcac tgtcgatacc ttgtgctttt aagctttcta
    11941 ccacatattt agtacgtgct tccgcatcag ggtgacccgg ctcacctttt aataaggcaa
    12001 attggatttt accgtcttta ttcaagtcta attcaggatg ggctttccac tgttttgcaa
    12061 ttaactcacc ttgaataatg cctgactctt tcggctcagt acctacataa taagctttcg
    12121 gatagctatc aatcgcagct gcacccgggt ctttattgaa gaacaccaca ggcacatctt
    12181 cactttttgc tttttgaata attgttttat aagctgatgg atccactaag ttaattgcta
    12241 atgctttaac ccctttagaa agtaatacat caacttggtc gttttgaata gattgcgtat
    12301 tttgcgagtc attcattaat aactcgactt tttgtgtttt accctctttt tcgatttctt
    12361 tacgcattaa tgccataaag ttatcgtcat atttataaat tgttacacca atacggtttt
    12421 cagcttgagc tgtactgatc gttgcaccta atgcgactgc cattgccact gcacttaata
    12481 ctgctttctt catagtagat cacctctttt atgtgtttat agggaaatga attgcttacc
    12541 ataagcaact tggtgcaaag tataactaat tttaaaaaaa caatccgtga tcattctcac
    12601 agaattaaga caaagtggag aaatttttaa ttttaag
//
LOCUS       DANMBQ010000069        12602 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.069, whole genome shotgun sequence.
ACCESSION   DANMBQ010000069 DANMBQ010000000
VERSION     DANMBQ010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12602
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.069"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            495..2882
                     /locus_tag="PXE92_001607"
     CDS             495..2882
                     /locus_tag="PXE92_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HDL5760841.1"
                     /translation="MEKMMRKINQLIISPYFFLSILSASANSDFWKSDLNFNLTNITK
                     RVGVDNFTTPVAGEPWAGIGPNGEAAGTAPLYYSRIPAMQVTEDNKLVVMFDLRWNRA
                     YDQDRIDPGIAISSDGGHTWTKKTAWSFDRTNHPARRSMDPTLLHNPIDNSLYVMHGT
                     WSMSDQQWYGGRVPHFNSGSWAATIYKSTDGGLNWEKNTEFSKFSNLDVFSKVTKNGK
                     PTLGFLGGVGSGIVMQDGTLVFPIQTAHQNGIATTIMYSKDNGKTWEMPEIDNPVAPN
                     QSSLENMVFELEPGKLVMTGRGNSRWAYSSTDMGKTWELFTPTNGLLPTSSQPTQGSS
                     IYVTLPNGRKVLLISKPDGKNDGWKRGDITLWMLDAKDPSHKHKVHIIRPGSGNAAGA
                     GYSSLAYKEGNLFVAFENDGDISVKNLTEHIAEMEAKAIEWGLPDELTPALDKINALP
                     YLNKAQKETLVEKMRRANDTAIAQSFVINKEMYNLKNNSDELDKLAKNITKALPSQQN
                     IYQRALAYVNKVTNTADTTYLNYNGIMDTYANLYESYLALNTKLDFTRYIQKARKFNE
                     YNTDILYRSFDNFFAHYDTGVKHNNLSLGLNTKLSENLRGGLFFEYSNKNRNSVQIGA
                     RAKYEMDNHQLSGFLRYRGVKHKDMLARNNSVDGYLNYAYRIQLDDKLSISPSVGAYV
                     SRSSRSLIDEDLAINSRTVYASDVGLNIHYKLNDIDAYIRPSIGFVNGDITLSQSNDM
                     TNTYKIKDKSNVYSVTTGLKKRFANGVALGADFKLHRYGSQTTESNFGLNVSYNW"
     gene            complement(3049..3585)
                     /gene="hpt"
                     /locus_tag="PXE92_001608"
     CDS             complement(3049..3585)
                     /gene="hpt"
                     /locus_tag="PXE92_001608"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HDL5760842.1"
                     /translation="MEKHHIETLHSKEEVLNRINELAKEINQHYHQKQCQNLVVVGLL
                     RGSFMFMADLVRKLELPVEVDFLTASSYGSSTESSRDVKILKDLDGEIQGKDVLIVED
                     IIDTGFTLSKVGEILKLREPNSLAICTLLDKPCRREVDVPVKWVGFEIPDEFVVGYGI
                     DYAQKYRHLDYIAKVVIE"
     gene            complement(3624..4973)
                     /gene="pmbA"
                     /locus_tag="PXE92_001609"
     CDS             complement(3624..4973)
                     /gene="pmbA"
                     /locus_tag="PXE92_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HDL5760843.1"
                     /translation="MSITDKQTLLQQEQELRQAVEFALNFAKQAGAEAEVGVTKVAGL
                     SVSSRLEQVENIEFNNDGSLGISVYLGKRKGNASTSDLQPESIQKTVEAALAIAKYTS
                     EDACTGLADKELLAFEAEDLELYHQADISVDQAVELAIEAEHYALNADEKIVNSDGAT
                     FNSHSGVRVYGNTHGMLQSYLSSRYSLSCSVISAYEDQLERDYEYTIFREFDKLQAPK
                     WVGEQAAIKAVDRLNPQRIKTGEMSVIFYNDVATGLVGHLAGAISGGALYRKSSFLLD
                     KLGEQILPEWFAISERPHLLRQLASSAFDSEGVITQNREIITDGVLQTYLMTSYSGRK
                     MGLKSTGHAGGIHNWLVKPNRQGGLNTLLKEMGTGLLVTEMLGSAINSVTGEYSRGAA
                     GFWVENGEIQYPVAEITIAGQLQDMYKNLVAVGDDIEHRSNIQTGSILLEKMMVSGE"
     gene            5072..5602
                     /locus_tag="PXE92_001610"
     CDS             5072..5602
                     /locus_tag="PXE92_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HDL5760844.1"
                     /translation="MAKKRSKNEIDWTDEEEEIIWVSKSEIKRDSEHLKKIGAELIEL
                     TPQNLEKIPLDDDLKEAIRQAQGFKMEARRRQIQFIGKLLRNRDQEPIQEALDKVKNR
                     HNQQQALLHKLELVRNQLIAMGDASLDNLLTEYPQLDRQHLRNLIRGAIKEREANKPA
                     KNYREIYQYLKTEIVE"
     gene            5608..5979
                     /locus_tag="PXE92_001611"
     CDS             5608..5979
                     /locus_tag="PXE92_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HDL5760845.1"
                     /translation="MEYLSTILKAHIGLAYISLILLLTRGFLSSKMVDWRQYKILRIA
                     PHAVDTFLLITGIAAVAIFLAYDFFTLAQFSWLLPKLLFLVLYIVFATKAFKKGQPFS
                     LKFYLLAVVSFLLMMLTATFH"
     gene            5992..6705
                     /locus_tag="PXE92_001612"
     CDS             5992..6705
                     /locus_tag="PXE92_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HDL5760846.1"
                     /translation="MIGPFVNAGAIILGGVLGACLGSHLPERIRTTLPLVFGLCCFGL
                     GMMLTASVKYMSAVALALILGTIIGELIYLENRIGKVAGLARGLIDRLFPPVHSLSQE
                     EFLEKFIALLVLFCVSGTGIFGAIKEGMTGDPSILYIKSILDFFTAMIFAASLGYAIA
                     AIAVPLIIVQGILILLATVIMPLTTANMMADFSATGGLLLFATGFRICGIKNFPVANM
                     LPALLLAMPMSYFWEWLVH"
     gene            6708..7271
                     /locus_tag="PXE92_001613"
     CDS             6708..7271
                     /locus_tag="PXE92_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HDL5760847.1"
                     /translation="MKKRIIVGISGASGFQYGYKVLELLKPFSEIETHLVISKGAELT
                     RTLETDYTREALHDLADQIHSLNNVGASIASGSFKTEGMVIAPCSMRTLAAIANGLSD
                     NLLTRAADVVLKERRKLVLMVREAPLNLAHIDNMRKVTEMGGIIFPPIPAFYQKPTSL
                     DEMVTHSVSHALSLLDIDIPNTPHWGE"
     gene            7334..7774
                     /locus_tag="PXE92_001614"
     CDS             7334..7774
                     /locus_tag="PXE92_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDL5760848.1"
                     /translation="MHNPIPTHILDFIQTNHVVNIAAHTEQDFWAANCFYAFDQENVR
                     LIILTAKKTRHAGLMLENPHIVGTICGQIEKINEIEGVQFSATAECLEDKQAEKAALQ
                     IYYQKHPLARLKPSDVWVLSFNTIKHTGNKLMFAKKTIWERNII"
     gene            complement(7778..8653)
                     /locus_tag="PXE92_001615"
     CDS             complement(7778..8653)
                     /locus_tag="PXE92_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5760849.1"
                     /translation="MMKTILIDEANQIKGFSHLYRLRSDLMLKYTEISVTETVEQEPA
                     EFEAGLRLVILLSGRSEIDFNSEVFELDASLKPQAAFLPLNRAEMGRKIFRKGQLQKE
                     LVIFLYPKWLIESQLNLASYHHFKQHLKAHQIILTQSMLKLIHDIVSEQEMQPFGLLE
                     KEGNLLALLASAFSQLTQAPRLKKDRVQQLTELLESGKFDGWSLKQIAIYFHTNVTTL
                     QNEFQHYHKTSIFAYLRRSKLEQAYKLLLQGQSITQAAEFAGYANSENFSTAFKRTFG
                     ITPSQIKRDKAKGII"
     gene            8759..10834
                     /locus_tag="PXE92_001616"
                     /pseudo
     CDS             8759..10834
                     /locus_tag="PXE92_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249230.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
     gene            10878..12314
                     /locus_tag="PXE92_001617"
     CDS             10878..12314
                     /locus_tag="PXE92_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3327 domain-containing protein"
                     /protein_id="HDL5760850.1"
                     /translation="MKKTTACILTFLVSSVLYANNITIELKQNDFVQGKLIQKAQQPL
                     SLSIIFPDQSSRLLAQNVFGEQDFMFKSELIGTATFSILANGATVSDQDFTLTIERHI
                     PISAQIAPPKVIENTQLEELSQKIAKNPEKQTALINDFWDKAKQAGTPLIEPLDEQQS
                     RVTFLWRGATKNARIWGGVSTEHDFMQRFGETDIWYKSYIVPNDTLVEYKLAPDVPTL
                     PVDENTQRRALLATAQADPLNKTAYFEKIGQNIHNTDKFNYASLLKLPNAPTQSFLTE
                     APNIAKGKLQQLIFESATLGNKHRLFVYLPDGFSAEKNYAVLYLFDGVEYTERVPTKT
                     ILDNMIAQKVILPTVAVFIENPSSESRRVELPANPIFTQVLAKELVPFVEKQLNIKTK
                     ERIIGGSSYGGLSSAYTVLNYPNVFSKALILSGSFWWQPKGTPSEQSHYIAQQFIQKE
                     KLPLCFFISAGFYESGKSAICKRSNYFA"
     gene            complement(12456..12602)
                     /locus_tag="PXE92_001618"
                     /pseudo
     CDS             complement(12456..12602)
                     /locus_tag="PXE92_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011625997.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
BASE COUNT         3909 a         2515 c         2338 g         3840 t
ORIGIN      
        1 tctcgaccag gcaccatttg actaaattta gttcaacaga gctaaacgaa aaaaccttag
       61 aaagcctgta aaatcaacgt ttacaggctt ttttgttgtt ttagctcaat ggcactaaac
      121 atttcatatc gcaaatttta agtagcctag caaattttcc gccaaatatg accgcttgta
      181 atgccgttag gttattgcct ggcggccttt ttgttacagc tcttatattt tttacaccaa
      241 agttcagaaa aagtcacttt tatcactaac attaagatga aaccttgata caaagcttgg
      301 gcttcggtga tatttaaaaa atatcacttt tttcaataat tgtgacaaat ctctcagatt
      361 tttttatttt tttgtgctta aatcttaagc ataaaatgcc gttataatta cttgctatct
      421 ggtattttat acataagatt gaaccatata atagctgttc agctaaaaat tagtctttgc
      481 actttatccc cctaatggag aaaatgatga gaaaaatcaa tcagttaatc atatccccat
      541 actttttcct aagtatttta tctgcttccg ctaactctga tttttggaaa agcgacctta
      601 attttaatct cacaaatatt accaagcgtg tcggagtcga taactttacc actccagtag
      661 ctggcgagcc ttgggctggt attggtccaa atggtgaagc tgcaggtact gcgccattat
      721 attatagccg tattccagct atgcaagtta ccgaagataa caaattagtt gttatgtttg
      781 atttacgctg gaatcgtgcg tatgaccaag atcgtattga tcctggtatt gcgatttctt
      841 ccgatggtgg ccatacttgg acgaagaaaa ccgcttggtc ttttgataga actaatcacc
      901 cagcacgccg ttcaatggat ccaacgctat tacataatcc tattgataat agtttatatg
      961 taatgcacgg aacttggtct atgtcggatc aacaatggta tggtgggcgt gttcctcact
     1021 ttaatagtgg cagctgggca gctaccattt ataaatctac tgatggtggt ttaaattggg
     1081 agaaaaatac tgagtttagt aaattcagca atttagacgt attttctaaa gtcaccaaaa
     1141 atggaaaacc taccttaggc tttttaggcg gggtcggatc tggaattgta atgcaagatg
     1201 gtacgttggt tttcccaatt caaaccgcac atcaaaatgg tattgcgacc actattatgt
     1261 attctaagga taatgggaaa acttgggaaa tgccagaaat tgacaaccca gttgcaccga
     1321 accaaagttc tttagaaaat atggtgtttg aactcgaacc gggtaagcta gtgatgactg
     1381 gacgaggaaa cagtcgctgg gcatactctt ctactgatat gggtaagacc tgggaattat
     1441 ttactccaac taatggatta ttaccaacta gctcacaacc aactcaaggc tcttctatct
     1501 atgtaacact accaaatggt cgaaaagtgc tactaatctc taaaccagat ggaaagaatg
     1561 atgggtggaa aaggggtgat attacacttt ggatgctaga tgcaaaagat ccatcgcaca
     1621 aacacaaggt gcatattatt cgtccaggtt caggtaatgc cgctggtgct ggttattcct
     1681 ctttagccta taaagaaggg aatttatttg ttgcttttga aaacgatggt gatatttcag
     1741 taaaaaattt aactgaacat attgctgaaa tggaagcaaa agctatcgaa tggggattac
     1801 cagatgaact tactcctgct ttggataaaa tcaatgcact gccttatctc aataaagctc
     1861 aaaaagagac gctagtcgaa aaaatgcgtc gtgctaatga tactgcgatt gcacaatctt
     1921 ttgtgattaa caaagaaatg tataatctga aaaacaatag tgatgagctg gataaattgg
     1981 caaaaaatat tactaaagca ctgccgtctc aacagaatat ttatcaaaga gccttagcct
     2041 atgtgaataa agtcaccaat acagcggata ccacttattt aaattataat ggtattatgg
     2101 atacctatgc taatttatat gaaagctatt tggctttaaa tactaaatta gacttcactc
     2161 gctacatcca aaaagcgaga aagttcaatg aatataacac tgatatttta tatcgtagct
     2221 ttgataattt ctttgcccat tacgacacag gtgtaaaaca caataatcta tccttaggct
     2281 tgaatacaaa attaagtgag aatttacgtg gtggcttatt ctttgaatac agtaataaaa
     2341 atcgtaatag cgtacaaatt ggtgcaagag ctaaatatga aatggataat caccaacttt
     2401 ctggcttctt acgctatcgt ggcgtaaaac ataaagatat gctagcacgt aataacagtg
     2461 ttgatggcta cctaaattat gcttatcgta ttcaattaga tgataaatta agcattagcc
     2521 catcagttgg tgcttacgtt tcacgttctt ctcgctcatt aatagatgaa gatcttgcga
     2581 ttaatagccg cacggtctat gcaagtgatg taggattgaa tatccattat aagctaaatg
     2641 atattgatgc ttatattcgt ccaagtatag gctttgtcaa tggtgatata actttatctc
     2701 aatctaatga tatgacaaac acatacaaaa taaaggataa aagtaacgtg tattctgtca
     2761 cgacagggtt gaaaaaacgc tttgcaaatg gtgtggcatt aggggctgat ttcaaattac
     2821 atcgttatgg ttctcaaact actgaaagta atttcggtct aaatgtaagt tataactggt
     2881 aataccgtaa actgattacg atttaaaagt tagactagcc caagactgag ttctatattc
     2941 catagagctc agtcttttaa tttttctttc tcgataagaa tattttatat ttcaacctta
     3001 atcgagaatg taattagtcg tgaaaatcta agtagtgatt gagttttttt attcaatcac
     3061 tactttagca atataatcta aatgacgata tttttgggca taatcaatcc cataacccac
     3121 cacaaattca tcggggatct caaatcccac ccattttacg ggcacatcaa cttcgcggcg
     3181 gcaaggttta tctaataaag tacaaatagc aagtgaattt ggctcacgta acttgagaat
     3241 ctcccctacc ttgcttaagg tgaagccagt atcaataata tcttctacaa tcaatacatc
     3301 tttaccttga atttcgccat ctaaatcttt tagaattttg acatcacggc tggattccgt
     3361 gctgctgcca tagcttgatg cggttagaaa atccacttct acaggtaact ctagctttct
     3421 tactaaatct gccataaaca taaacgagcc tcgcaataaa ccaaccacta caaggttttg
     3481 gcactgtttt tggtgatagt gttgattgat ttcttttgct aattcattga ttcggtttaa
     3541 tacttcttct tttgaatgta gcgtttcgat atgatgtttt tccattgatt tctccaaata
     3601 aaattgatta caagcggccg tttttactcg cctgaaacca tcattttttc taataagatt
     3661 gaacctgttt ggatatttga gcggtgttca atatcatcgc ctaccgccac taaattttta
     3721 tacatatctt gcagttgccc tgcaatggta atttccgcta cagggtattg aatttcaccg
     3781 ttttctaccc aaaatcctgc tgcacctcga gagtattccc ctgttacgct attaatcgca
     3841 gaacctagca tttccgttac taataatcct gttcccattt ccttaagtaa cgtatttaaa
     3901 ccaccttgac gatttggttt aactaaccag ttatgaatac cacctgcgtg tcctgtactt
     3961 tttaacccca ttttacgccc tgaatagcta gtcattaaat acgtttgtag cacgccatca
     4021 gtaataattt cacggttttg ggtaattaca ccttcactat caaacgcaga agaggctaat
     4081 tgacgcaaca aatgcggacg ctctgaaatc gcaaaccatt caggcagaat ctgttcgcct
     4141 aatttatcta ataagaaact tgatttgcgg tataatgcac cgccactaat agctccggcc
     4201 aaatgcccca ctaaaccggt tgccacatcg ttatagaaaa tcacagacat ttcgccggtc
     4261 ttaattcgtt gcggattcaa tctatctacc gctttaattg cagcttgctc ccctacccat
     4321 ttcggtgctt gtaatttatc aaactcacgg aaaatggtgt attcataatc acgctcaagc
     4381 tgatcttcat aagctgaaat cacgctacaa gagagtgaat atcggctcga caggtaactc
     4441 tgcaacattc cgtgcgtatt gccataaaca cgcacgccac tgtgagaatt gaaagttgcc
     4501 ccgtcactat tcacaatttt ttcgtctgca tttaaggcat aatgctccgc ttcaatcgcc
     4561 aattcgactg cttgatcaac tgaaatatcc gcttggtggt acaattccaa atcttctgcc
     4621 tcaaaggcaa gcaattcttt atcagcaagc ccggtacaag catcttctga ggtatatttt
     4681 gcaatcgcaa gagctgcttc aaccgttttt tgaatcgact ctggctgaag atcggaggtg
     4741 gaagcattac ctttgcgttt gcctaaataa accgaaatac cgagagaacc atcgttattg
     4801 aactcgatgt tttcaacttg ctctaaacgg cttgaaaccg aaagcccggc aactttagtc
     4861 acgcctactt ccgcctctgc cccagcctgt tttgcaaaat ttaaggcaaa ttcgaccgct
     4921 tgtcgtagct cctgttcttg ttgtaacaag gtttgtttat ctgtaattga cattttgttc
     4981 cattgattga ttgcattgat gaatatattc taactcaaat ttctgttaga atacggcatt
     5041 ttttagagtt tatgtaatga aaggataaag aatggctaaa aaacggagca aaaacgaaat
     5101 tgactggaca gatgaggaag aagaaatcat ctgggtcagc aaaagtgaga taaaacgaga
     5161 ttctgaacac ttaaaaaaaa ttggggctga attgatcgaa ttgaccccac aaaatttgga
     5221 aaaaattcca ctagacgatg atttaaaaga ggcaattcgc caagctcaag gctttaaaat
     5281 ggaggctcgc cgccgtcaaa ttcaatttat cggcaaatta ttacgcaacc gtgaccagga
     5341 gccgattcaa gaagccttag ataaagtgaa aaatcgccat aatcagcaac aagccctatt
     5401 acataaattg gaattagtgc gtaatcaact gattgcaatg ggcgatgcat cattagataa
     5461 tttattgacg gaatatcctc aattagaccg ccaacatttg cgtaatttaa ttcgtggggc
     5521 aattaaagag cgtgaagcca ataaaccggc aaaaaattac cgtgaaattt atcaatattt
     5581 aaaaactgaa atcgtggagt gattattatg gagtacctat caaccattct taaagctcat
     5641 atcggcttag cttatattag tttaatttta ttattaaccc gtggattttt atcgtcaaag
     5701 atggtggatt ggcgacaata taaaattttg cgcattgccc cacacgcagt tgataccttc
     5761 ttacttatca ccggtattgc tgctgtcgct attttcttag cttatgattt tttcacctta
     5821 gcacaattca gttggttgct accaaagtta ctcttcttag tactttatat tgtatttgcg
     5881 acaaaagcgt tcaaaaaagg acaaccgttt tcgctcaaat tttatctgtt agccgtagtc
     5941 tcattcttat taatgatgct aactgccact tttcactaaa taagggaaac tatgatcggg
     6001 ccttttgtga atgccggtgc aattatttta gggggcgtgc tgggtgcttg tttagggagt
     6061 cacctgcctg aacgtattcg cactacgttg ccgctggtat tcggcttatg ctgtttcggc
     6121 ttaggtatga tgctgactgc ctcagtaaaa tatatgtctg cggttgcctt agcattgatt
     6181 ttaggcacga tcatcggtga actgatttat ttagaaaaca gaatcggtaa agttgccggt
     6241 ttagctcgtg gtttaattga ccgcctattc ccaccggtgc atagtctttc ccaagaagag
     6301 tttttagaga aatttattgc tctgcttgta ctgttttgtg tgagcggtac cggcattttt
     6361 ggtgcaataa aggaaggaat gacaggcgat ccaagtattc tttacattaa atcgattcta
     6421 gatttcttca ccgcaatgat tttcgctgct tcgttaggct atgccattgc ggcgattgca
     6481 gtgccgttga ttattgtgca agggatttta attctactgg caaccgtgat tatgccttta
     6541 accactgcca atatgatggc agatttctcc gcaaccggcg gtttactgct atttgcaacc
     6601 ggctttcgca tttgtggaat taaaaacttt ccggtcgcaa atatgctacc agcactactc
     6661 cttgcgatgc cgatgtctta tttctgggaa tggttggtac attaatgatg aaaaaacgta
     6721 ttattgtcgg cattagtggg gcaagtggtt ttcaatatgg ctataaagtg cttgaactgc
     6781 tgaaaccgtt ttcagaaatt gaaacccacc ttgtaatcag caaaggagct gaactcactc
     6841 gtactctcga aacggattat acccgagaag ctcttcatga tttagctgat caaatacatt
     6901 cgctaaacaa tgtcggagca agcattgcca gtggttcatt taaaaccgaa ggtatggtca
     6961 tcgccccgtg ttctatgcga acccttgccg ctattgccaa cggtttgagc gataatttgc
     7021 tgacccgtgc ggcagatgtg gtgttgaaag aacggcgtaa attggtatta atggtgagag
     7081 aagctccgct caaccttgct catattgaca atatgcgaaa agtcacagaa atgggcggca
     7141 ttattttccc acccattccg gcgttttacc aaaagccaac cagccttgac gagatggtca
     7201 cccacagcgt aagccatgcc ctttccctgt tggatattga cattccaaat accccacatt
     7261 ggggagaata attcggctta tcttttgctt tttgaaatgc tagaatacct gataaaaact
     7321 atcaggtatt tttatgcaca atccaatccc gacccatatt ttagatttca ttcaaactaa
     7381 ccacgttgtc aatattgcag ctcataccga acaggatttt tgggcagcaa attgctttta
     7441 tgcctttgac caagaaaatg ttcgcttgat tatcttaacc gccaagaaaa ccagacacgc
     7501 tggcttgatg cttgaaaacc cacatattgt cggcacaatt tgtgggcaaa ttgagaagat
     7561 caacgaaatt gaaggtgtcc aattctccgc taccgccgaa tgtttagaag ataaacaagc
     7621 cgaaaaagcc gctttgcaaa tttattacca aaaacacccg cttgcacggc ttaagcctag
     7681 cgatgtttgg gtgttatcat tcaataccat caagcacacc ggtaataaac ttatgtttgc
     7741 gaaaaagacg atttgggaga gaaatataat ttgaagctca aataatgcct ttagccttat
     7801 cccgtttgat ttggcttggt gttatcccaa aagttcgctt aaatgccgtt gaaaaattct
     7861 ccgaattggc atatccggca aattcagctg cttgtgtaat actctgccct tgtaatagta
     7921 atttataggc ttgttctaat ttagaacgcc ttaaatacgc aaaaatagag gttttgtggt
     7981 aatgctgaaa ttcattttgt aatgtggtca cattggtatg gaaatatatt gcaatctgct
     8041 tcaaactcca gccgtcaaat ttaccgctct caagcaattc tgttaactgt tgcacccgat
     8101 ctttttttaa ccggggagcc tgtgtcagct gagaaaaagc acttgctaat aaagctaata
     8161 gattaccttc tttctcaagt aacccaaatg gttgcatttc ctgctctgac acaatatcgt
     8221 gaataagttt taacatactc tgagtcaaaa taatttggtg ggcttttaaa tgctgtttaa
     8281 agtgatgata gcttgccaaa tttaactggc tttctattag ccatttaggg tagagaaaga
     8341 taacaagctc tttttgaagt tgccctttcc taaaaatttt acgccccatt tcagctctat
     8401 ttagcggtaa aaatgcggct tgaggtttta aacttgcatc taattcaaat acttccgaat
     8461 taaaatcaat ttccgatcga ccactcaaca atataaccaa tcttagtccg gcttcaaatt
     8521 ccgcaggttc ttgctctacg gtttcagtaa ctgaaatctc tgtatatttc agcataagat
     8581 ctgaacgtag tcggtataaa tgtgaaaaac cttttatttg gttagcttca tcaatcaaga
     8641 ttgttttcat cattaaaaac tttttttcgc atagtcaaaa ttttatttta caaaggtttt
     8701 ttgcataaaa acaagatatt attatattca ataatcattc ttatttaagg ataaactaat
     8761 gaaaataaaa aaatattcac tttctctaat cactttagcg attgtagctc ctcaagtatt
     8821 agcagaaaca acctctcaag cagaactaaa tgctattgag gtcaaagaga aattggcagc
     8881 taccaccggc tatattcctg tttatacgac tgtaggaacg aaaacattaa cctctttggc
     8941 tcgtacacct tttagtatca atgttgtctc tgatgattta atgcatgacc aagctgttcg
     9001 ttctgttacc gattcagtgg cttatacctc cggtatgatg ggtggctatc gtggtaacaa
     9061 ttcgcttatc gaaatctcca ttcgaggcat tggcaataaa agtgatggca gtacaattcc
     9121 gacctattta aacggttctc gctaccaaac tgcatttgaa atcgatccgt tcttcttaga
     9181 aagtatcaat gtgattaaag gtccaaactc cattttatac gggcaagcta atcccggtgg
     9241 cgtaatggat attatcacca aaaaagccgg cagtaaccca catcgccatt tgcaatttgt
     9301 ggtgggaaac catcaacgat accaaatcgg gctggatatt gaagaaaatc tctccaatac
     9361 cttatccgct cgtttaatcg gtcaattaga acgaacaaac tggaatacct aatttgtaaa
     9421 agaaaaaggc ggtgcttttg ctccaagcat tttatggaaa ccgactacaa atacagaact
     9481 taatgtttac gcttactatg caaaaaaacc gaaagccggt gatcgtaact ttttaccgaa
     9541 agaaggaacg attaatagcg taaacgggaa ggaactaccc tatgatatgt tcctcagcga
     9601 tctgaactat cacggtttaa aagccgaaca aatgcaagta ggttacagtt tctcacataa
     9661 atttacgcca aacctaacgt tccgccaaaa tgcaagttac cataatggcg aagagaattt
     9721 caaaaatcta gtttattggg gcgatgtcgg ttcggtttta gaacgtagag ctcgccattg
     9781 ggatgtcaaa acccaagaaa tcaacttaga taaccaatta gaatgggtat ttagcacagc
     9841 aaatataaat cataccttgt tagccggtat tgattataaa cgagtgcgta aagatcttga
     9901 taactatatg gggattgccc ctgattttga ttggcagaac cctgtttatg gcgtgaccgt
     9961 tactgagcct agcttatttt caagtgaagt gaagcattta aaacaacttg gggtttatct
    10021 acaagatcaa atagaaatcg gtaattttga cttcctgtta ggcggtcgtt acgatcgagc
    10081 aaaaaacagc aaccaagatc gtttgaacag taaaacagag aataaccaag aaggaaaatt
    10141 tacttggcgt acaggcgtag tttacaactt tgaaaacggt atcgctccgt atatcagcta
    10201 cagcacttct tttgtgccat cggctgaaaa agatgctcaa ggaaatttct taaaaccaac
    10261 aactgctggg caatgggaag tgggaatgaa ataccaacct acccaagaca ccttactgac
    10321 cttagcagga tttaaaatta cacaaaaaga tttagccaat tatcaatggc aaacccgctc
    10381 ttatgagcaa attggtgaag tgcaaaccaa aggaattgaa gtgagtttaa atcagcaatt
    10441 atccgataaa ttttcaatag cggcttctta tgcttactta aaaaaagaga ttactgcaga
    10501 taaagatggc acgacgattg gaaaaacgca gtggggagtg cctcgccatc aagcatctct
    10561 ttgggcaaaa tataaattct ttgataagct gaccgccggt gtaggtgtac gctatatggg
    10621 aacgactttt ggcgataacc aaaatacttt taccgtaccg gcatacacac tttacgatat
    10681 gatgctagct tatgatttta tgcctaactt aaacttacag ctcaacgcac aaaacctgac
    10741 gaataaaaaa tatgtcgcaa gctgtgccaa taatttttcc tgtttctatg gaaaagatcg
    10801 caatttaagt gcaacgttaa actatcattt ttaatctcaa cagccctcaa atgagggctt
    10861 aaacttttgc aaaaaatatg aaaaaaacga ccgcttgtat tcttactttt ttggtttcat
    10921 ctgtgcttta tgctaacaat ataaccattg agcttaaaca gaatgatttt gtgcaaggca
    10981 aattgattca gaaggctcaa cagccacttt ccttgtcgat tatttttcct gaccaaagct
    11041 ctcgcctgct ggctcaaaat gtctttggtg aacaagattt tatgtttaaa tcagaactaa
    11101 tcggcacagc tactttttct attctagcga atggtgcaac cgtttcagac caagatttta
    11161 ccttaacgat tgagcggcat attccaatct cggcacaaat tgctccacct aaagtaattg
    11221 aaaatacaca gcttgaagaa ctcagccaaa aaattgcaaa aaatccagaa aaacagaccg
    11281 ctttaattaa cgatttttgg gataaagcaa aacaagccgg cacaccattg attgaaccat
    11341 tggacgaaca gcaaagccgt gtaacttttt tatggcgtgg agcaacgaaa aatgcccgta
    11401 tttggggcgg tgtgagtact gaacacgatt ttatgcaacg ctttggtgaa acggatatat
    11461 ggtataaaag ttatatagtg cccaatgaca ctttagtgga atacaaatta gctccagatg
    11521 tgccgacatt gcccgttgat gagaataccc aacgcagagc gttactggct acggctcaag
    11581 ccgatccact caataaaaca gcatacttcg agaaaatcgg acaaaatatt cataataccg
    11641 ataaattcaa ctacgcttcg ctacttaaat tgccaaacgc acctactcaa tcttttttga
    11701 ctgaagctcc aaatattgca aaaggtaaac tgcagcagtt gatttttgag agtgcaacac
    11761 tcggcaataa acacagatta ttcgtctatc tgcctgacgg ttttagtgca gaaaaaaact
    11821 atgcggttct ctatttattt gatggtgttg aatataccga acgagtgcca actaaaacca
    11881 ttttagataa tatgatcgct cagaaagtga ttctgcctac tgtagcggtg tttatcgaaa
    11941 atccatcgag tgaatcaaga cgtgtcgagc tgcctgccaa tcccatattt acgcaagtat
    12001 tggcaaaaga acttgtacct tttgttgaaa aacagctcaa tataaaaaca aaggagcgaa
    12061 ttattggcgg ctctagctat ggcgggctat cctctgctta caccgtactc aactatccta
    12121 atgtatttag taaagcattg attctatccg gttcattttg gtggcaaccc aaaggcacac
    12181 ctagtgaaca aagccactat attgctcaac aatttatcca aaaagaaaaa ttaccactct
    12241 gttttttcat cagtgcaggt ttttatgaaa gcgggaaatc ggctatttgt aagcggtcga
    12301 attattttgc atagaattac actcaatttt gcatagataa aaattaaaaa ctatgcaaaa
    12361 taattgtaga agatcaaacc taatctgaca gtcccccgtt ttaaattacc gtgtctgtca
    12421 gattaatttg agcttaaatt cttttccacc caaacgcgtc tattttgatt cagcaatgct
    12481 tcaacaccac cttgctcaac cgcttgttga taacgataga atgtatctcg gctcattccc
    12541 attactttgc aggcttgaga aatattaccc agttcttctg ctaaatttaa taaaccgctc
    12601 tt
//
LOCUS       DANMBQ010000070        12396 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.070, whole genome shotgun sequence.
ACCESSION   DANMBQ010000070 DANMBQ010000000
VERSION     DANMBQ010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12396
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.070"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            89..748
                     /locus_tag="PXE92_001619"
     CDS             89..748
                     /locus_tag="PXE92_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5760851.1"
                     /translation="MFNISKQQVLDAFHFRSACRSYDPNKKINKEDMDYILELGRLSP
                     SSVGSEPWKFLVLQNPETRQKIAPVSWGIKHPMEEMSHLVVILTKKNVRYDSVYMRDM
                     LAKRGLTYEQIEASLVRYKSFQEEDMKLLSERELFDWSTKQTYIALGNMMTGAALIGI
                     DSCPIEGFHYDTVNQILSDEGLFDLNEYGVSCMITFGYRNKEIKKKSRKPTEEVIAWI
                     E"
     gene            complement(808..2133)
                     /locus_tag="PXE92_001620"
     CDS             complement(808..2133)
                     /locus_tag="PXE92_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HDL5760852.1"
                     /translation="MLIFNLIVFAAILFLLAKIYKSTQKLGQTVFIGLFLGLASGAFL
                     QTFYEKATVDATLDWINLIGNGYVRLLQMIVMPLVFVSILSAITRLKEAGSLGKISFS
                     VLSVLLVTTAIAAAIGIALVYLFDLSAEGLVAGSRELAAQEKVVGRVEQVSNLSVPSM
                     LLSFIPKNPFLELTGANPTSIINTVIFSALLGIAALSLGKEDKALGERIAQGVETLNK
                     LVMRLVRFVIRLTPYGVFALMIKMAATSQWSDIVNLGSFIVASYIAIGLMFIVHGILL
                     FVAKINPLDYYKKVLPTLSFAFTSRSSAATIPLNIETQTNKLGNNSVIANFSATFGAT
                     IGQNGCAGIYPAMLAVMVAPTVGMDPFSLNYILTLILVVAISSFGIAGVGGGATFAAI
                     VVLSTLNLPIELVGLLISVEPIIDMARTALNVNGAMVAGTLTNKWVKAE"
     gene            complement(2234..2986)
                     /locus_tag="PXE92_001621"
     CDS             complement(2234..2986)
                     /locus_tag="PXE92_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-ribbon-containing protein"
                     /protein_id="HDL5760853.1"
                     /translation="MYQAIVHFSYHNFEQDPVTAISQILNQWLYNGQVIGREMPITFH
                     QNEFQARVCVPTQESLLPQYNSDEVNEALQQAVEIGVIFASFELVGRDYQGEESSHNR
                     SPAFQILYTTHLDTCSPLYDGEQFAPIPLYSLQDQSLSEAILEWQQNWQACDLLQMNG
                     NLLECHALVQISDETSDLAMIGRDLCQQIEQKTHIPTFYYLYRLGRDESEYQRKCPCC
                     GGEWKLTEPLHDIFHFRCEPCRLISNLSWELL"
     gene            complement(2986..3891)
                     /locus_tag="PXE92_001622"
     CDS             complement(2986..3891)
                     /locus_tag="PXE92_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HDL5760854.1"
                     /translation="MNEKYSKLVKNAANLAIIVAILLIVIKAFAWWKTGSISILAAMT
                     DSVVDLFASLTNILVLRFALQPADENHAFGHGKAESLAALAQSAFISGSAVFLLLQGF
                     HKLTNPELIAQSSIGVIVSIVSIVITALLVFYQRYVVTLTKSPAIEADSLHYQTDLLM
                     NAAILVAMLLNSAGFVYADAVFAIGIALYIAFNAVKMFWCAVQTLLDQALPDEEIERI
                     KEIASQHPNILGIHDILTRRAGAVRFIQLHLELDDHLTLLVAHEITDSLEQKLLAAFP
                     MSHVIIHQEPTTVVKQEFQDMAENI"
     gene            complement(3900..4463)
                     /locus_tag="PXE92_001623"
     CDS             complement(3900..4463)
                     /locus_tag="PXE92_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATPase"
                     /protein_id="HDL5760855.1"
                     /translation="MSAIKKGITLVALSLAGCVSQSPQFAVPDAIHFGQDTFVKVTHS
                     QIDEMQHLLYLPEKSEKNPENWQKGILFFLDKNSKNQTLEQRAAFRQASFAKKPELEA
                     KVEIQQNELHSSVIYPPIERFNNVMLEVTRGRNLACGYGQIQFADKREVGKTVAKKSP
                     NLTAYSQEIARLSLELNQLGWQVQCSK"
     gene            complement(4463..5239)
                     /gene="yaaA"
                     /locus_tag="PXE92_001624"
     CDS             complement(4463..5239)
                     /gene="yaaA"
                     /locus_tag="PXE92_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HDL5760856.1"
                     /translation="MLAIISPAKTLDFKTNIDGFAFSQPNLTACSQELIDICKQLSPA
                     ELGSLMSISDKLAALNVARFAEWQLEHNEQNAKAALFAFKGDVYTGLEAETLSKAQVE
                     YAQQHLRMLSGLYGLLKPLDLMQPYRLEMGTKLANPKGKDLYAFWGNIITENLQQAID
                     EQGDDILVNLASDEYYGAVKPQNLNATIIKPVFLDEKNGKYKVISFYAKKARGMMVRF
                     ILDTQPTSIEQLKQFNYGGYWFDADSSSESELVFKREEQA"
     gene            complement(5428..7148)
                     /gene="ltrA"
                     /locus_tag="PXE92_001625"
                     /pseudo
     CDS             complement(5428..7148)
                     /gene="ltrA"
                     /locus_tag="PXE92_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341372.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
     gene            complement(8830..9225)
                     /gene="rpsI"
                     /locus_tag="PXE92_001626"
     CDS             complement(8830..9225)
                     /gene="rpsI"
                     /locus_tag="PXE92_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDL5760857.1"
                     /translation="MTAANQNYGTGRRKSSSARVFIKPGSGNITINQRSLEVYFGRET
                     ARMIVRQPLELVELTDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAA
                     GFVTRDARRVERKKVGLHKARRRPQYSKR"
     gene            complement(9242..9670)
                     /gene="rplM"
                     /locus_tag="PXE92_001627"
     CDS             complement(9242..9670)
                     /gene="rplM"
                     /locus_tag="PXE92_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDL5760858.1"
                     /translation="MKTFVAKPETVQRDWYVVDATGKTLGRLATELARRLRGKHKPEY
                     TPHVDTGDYIIVINADKVAVTGKKQTDKIYYWHTGYVGGIKDATFKEMIARRPEAVIE
                     IAVKGMLPKGPLGREMFRKLKVYAGSEHNHQAQQPQVLDI"
     gene            9969..10364
                     /locus_tag="PXE92_001628"
     CDS             9969..10364
                     /locus_tag="PXE92_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcB family protein"
                     /protein_id="HDL5760859.1"
                     /translation="MEQWTTDVWAAIMAAFIVGAVIGCTLVRVFNSSVRKQHELEKEL
                     KQTKTQVDEQKQKLEQHFEQSAQLLSSLASDYKKLYTHLAQSSEKLLPEASKNITFFQ
                     QTKLPIPAEKTEEDQPRDYSEGSSGLLKS"
     gene            complement(10525..12096)
                     /gene="guaA"
                     /locus_tag="PXE92_001629"
     CDS             complement(10525..12096)
                     /gene="guaA"
                     /locus_tag="PXE92_001629"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDL5760860.1"
                     /translation="MTNIHHHKILILDFGSQYTQLIARRVREIGVYCELWAWDVTEEQ
                     IREFNPTGIILSGGPESTTEENSPRAPEYVFNAGLPVLGICYGMQTMAMQLGGLTETS
                     DHREFGYASVALKSADQLFANLNDDLTACEPKLDVWMSHGDKVTKLPPHFTITGVTPT
                     CPIAAMSDESRRFYGVQFHPEVTHTKQGLALLKNFVVGICGCETNWTAENIIEDAVKR
                     IREQVGDDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG
                     NKFGLNIVRVNAEDRFLEALKGLDEPEAKRKTIGKVFVDVFDDESKKLSSVKWLAQGT
                     IYPDVIESAASKTGKAHVIKSHHNVGGLPDYMKLGLVEPLRELFKDEVRKIGLALGLP
                     AEMLNRHPFPGPGLGVRVLGEIKKEYCDLLRKADAIFIEELHKAGWYYKVSQAFTVFL
                     PVKSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDLLGKISNRIINEVNGISRV
                     VYDVSGKPPATIEWE"
     gene            complement(12113..>12396)
                     /locus_tag="PXE92_001630"
     CDS             complement(12113..>12396)
                     /locus_tag="PXE92_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760861.1"
                     /translation="ALSACSIFGPSYSGETTASPLLKLDTERNINLYFQAIHKCTPDK
                     IHTKIINIPSEGNAKELWTATGCNKTQSFIITYRNDGVGGTFINMTTTP"
BASE COUNT         3530 a         2781 c         2350 g         3735 t
ORIGIN      
        1 ttttgcaaat taacaggcgt gaaattcgca ttctgctcta aatcaagtta tcattaatct
       61 acttatttca cttataaaag gaaaaacgat gtttaatatt agcaaacagc aagttttaga
      121 cgcttttcac ttccgttcgg cctgtcgcag ttacgatcca aacaaaaaaa tcaacaaaga
      181 agatatggat tatattttgg aactcgggcg tctctcacca agctctgtcg gttctgaacc
      241 gtggaaattt ttagtgctac aaaacccgga aacccgtcag aaaatcgccc cggtttcgtg
      301 gggaattaaa cacccaatgg aagaaatgag ccatttagtg gtgattttaa ccaaaaagaa
      361 tgtccgttat gattctgtct atatgcgtga tatgttagcc aaacgaggct taacctatga
      421 gcagattgaa gcctcgctgg tacgctataa gtcgttccaa gaagaggata tgaaattgct
      481 tagtgaacgt gaattattcg attggagtac caagcaaacc tatattgcat taggcaatat
      541 gatgaccggt gcggctctga ttggtattga ctcttgcccg attgaaggtt ttcattacga
      601 taccgtaaac caaattttat cggacgaagg cttatttgac ctaaacgaat atggtgtgtc
      661 ttgtatgata acttttggct atcgcaacaa agaaattaag aaaaaatccc gcaaacctac
      721 cgaagaagtg attgcgtgga ttgaataatc accttaactt ataaaaacgg gcgaattaat
      781 cgcccatttt tatatcttta gttttgacta ctcggctttc acccatttat tggttaatgt
      841 gcccgccacc attgcaccat tcacgtttaa ggcggtgcga gccatatcaa taatcggctc
      901 aactgaaatg agcaagccta ctaactcaat cggcagattc aaggttgata gcaccacaat
      961 cgccgcaaaa gttgcaccac cacctacacc ggcaatgcca aatgaggaaa ttgccaccac
     1021 caaaatcaag gttaaaatat agtttaagct aaacggatcc attcccactg ttggagcgac
     1081 catcaccgcc aacattgccg gataaattcc cgcacagcca ttttgcccga tggttgcccc
     1141 aaaggttgca gaaaagttgg caatcacact gttattacct aatttattgg tttgcgtctc
     1201 aatattcaac ggaatggttg ccgcactgga acgagacgta aaagcaaaac ttaatgtcgg
     1261 caacactttt ttgtagtaat ccaacgggtt gattttagcc acaaagagta aaataccgtg
     1321 cacaataaac atcaaaccaa tcgcaatgta tgatgccaca ataaagctac ctaaatttac
     1381 aatatcgctc cattgagaag ttgccgccat tttgatcatc aacgcaaata cgccataagg
     1441 ggttaggcga atcacaaaac gtactaaacg cataaccagt ttatttaagg tctctacacc
     1501 ttgtgcgata cgttcgccca acgctttatc ttctttgcct aagctcagtg cagcaatgcc
     1561 tagcagagcc gagaaaataa ccgtgttgat gatcgacgtt gggtttgcac cggttaattc
     1621 taaaaacgga tttttcggaa tgaaagaaag caacattgaa ggcacagata agttgctcac
     1681 ctgctccaca cgccctacca ctttctcttg agcggcaagc tcacgggagc cggcgactaa
     1741 accctcggca gataaatcaa acagatacac taaagcaata ccaatcgctg cggcaatcgc
     1801 ggtggtcact aataacactg atagcacact aaaactaatt ttgcctaaag atcctgcctc
     1861 ttttaagcgg gtaattgccg ataaaataga gacaaacacc aatggcatta cgatcatttg
     1921 tagcaagcga acataaccgt taccaattaa gttaatccaa tcaagagttg catcaacagt
     1981 agctttttcg taaaaagttt gcaaaaaagc accgcttgca agccctaaaa ataacccaat
     2041 aaacactgtt tgaccgagtt tttgcgtaga tttataaatt ttagccaata aaaataatat
     2101 tgccgcaaag acaattaagt tgaaaataag cacagaacct ccaaagtaaa accgcttatt
     2161 ataaaaatgc cgcaagggta ttacgcttgc ggcattcatt caagatgatt tattactttg
     2221 gtataactaa aagttataat aattcccagc ttagattaga gatcaaacgg caaggctcac
     2281 atctaaaatg gaaaatatcg tgcaacggct cagttaattt ccattctccg ccacaacaag
     2341 ggcatttgcg ttgatattca ctttcatcac gccctaaacg gtagaggtaa taaaaggtgg
     2401 gaatgtgagt tttctgctca atttgctgac atagatctcg accgatcatt gcaagatcgc
     2461 ttgtttcatc actaatttga acaagtgcgt ggcactccag cagattgccg ttcatttgta
     2521 gcagatcgca cgcttgccaa ttttgctgcc attccaatat cgcttcgcta agagactgat
     2581 cctgtaaaga ataaagcgga attggggcaa actgctctcc atcataaagt ggcgagcagg
     2641 tatctaaatg ggtggtatat aatatttgaa acgctggcga gcggttatga ctgctttctt
     2701 cgccctgata atctcgcccg acaagctcaa aacttgcaaa aattacgccg atttcgaccg
     2761 cttgttgcaa cgcttcattt acttcatcac tattatattg tggcaaaagg ctttcttgtg
     2821 taggcacaca aacccgagct tgaaactcgt tttgatgaaa agtaatcggc atttctctgc
     2881 caatgacttg cccgttatat aaccattgat ttaagatttg gctaattgcc gtcaccggat
     2941 cttgctcaaa attatgatag ctgaaatgca ctatcgcctg atacattaaa tattctccgc
     3001 catatcttga aattcttgtt tgaccaccgt agtcggctct tgatgaataa tcacgtgaga
     3061 catcggaaat gccgccagca atttctgctc aaggctatca gttatttcgt gagctactag
     3121 cagcgttaag tgatcgtcta attccaaatg taattggata aaacgcactg cacctgcacg
     3181 gcgggttaga atatcgtgaa tccctaaaat gttcggatgt tgcgaagcaa tctctttaat
     3241 ccgctcaatt tcttcatcgg gcaaagcttg gtctagcaag gtttgcaccg cacaccaaaa
     3301 catttttact gcattgaaag caatgtagag ggcaatacct attgcaaaaa ctgcatcggc
     3361 gtacacaaaa ccggcactat taagcaacat tgccactaaa attgccgcat tcattaataa
     3421 atcagtttgg taatgtaacg aatccgcttc aatcgccgga cttttcgtaa gcgtgacaac
     3481 ataacgctga taaaagacta aaagtgcagt aatcacaatt gatacaatac tgacaattac
     3541 cccaatactc gattgagcaa ttaattccgg attggtgagt ttatggaaac cttgtagcag
     3601 taggaaaacc gccgagccgg aaataaacgc actttgggca agtgccgcca aagactccgc
     3661 tttgccgtgc ccaaacgcgt gattctcatc tgccggttgt agtgcaaaac gcagcactaa
     3721 aatattggtt agcgaagcaa acagatccac taccgaatcc gtcattgctg ccaagattga
     3781 aatcgaaccg gttttccacc atgcaaaggc tttaatcaca atcagtaaga tcgcaacaat
     3841 aatcgctaaa ttcgctgcat ttttgactaa tttgctgtat ttttcgttca tttactacat
     3901 tatttactgc attggacttg ccaacccagt tggtttaatt caagagaaag tctagcaatt
     3961 tcttggctgt aagcggtcaa attcggcgat ttttttgcaa ctgtcttgcc aacttcccgc
     4021 ttatctgcaa attgaatctg cccgtaacca caagctaaat tccgcccacg ggttacttct
     4081 aacatcacat tgttaaaacg ttctataggt ggataaatca cactgctgtg taattcattt
     4141 tgctgaattt ccactttcgc ctcaagctcc ggctttttcg caaaacttgc ttggcggaat
     4201 gcagctcgtt gctctaaggt ttgattttta ctgtttttat ctaagaaaaa taaaatgcct
     4261 ttttgccaat tttccggatt tttctcactc ttttctggca aataaagtaa atgttgcatt
     4321 tcatcaattt ggctgtgggt gacttttaca aaagtatcct gcccaaagtg aatagcatca
     4381 ggcactgcaa attgtgggct ttggctgaca caacctgcca atgataacgc aaccaaagtt
     4441 attccctttt tgatagccga cattatgcct gctcctcacg tttaaagact agctcgcttt
     4501 cactagaact gtctgcatca aaccaatagc ccccgtagtt aaactgtttg agctgttcga
     4561 tgctagtcgg ttgggtgtct aatataaagc gaaccatcat tccacgggct tttttggcat
     4621 agaagctgat cactttatat ttaccgtttt tctcatctaa aaacaccggc ttgataatag
     4681 tcgcatttag attttgtggc ttaaccgcac cataatattc atcagaggca agattaacta
     4741 aaatatcatc gccttgttca tcaatcgctt gctgcaaatt ttcagtaata atattgcccc
     4801 agaaagcata aagatctttg cctttcggat tggctaactt agtgcccatt tctaaacgat
     4861 aaggctgcat taaatctaac ggctttaata aaccatacaa gcctgaaagc atacgcaaat
     4921 gttgttgagc atattcaact tgtgctttgc ttaacgtttc tgcctctagt ccggtataaa
     4981 catcaccttt aaaggcaaag agggcggctt tggcattttg ttcgttatgc tcaagctgcc
     5041 actcggcaaa gcgagccaca tttaaagcgg ctaatttatc gctaattgac atcaaactac
     5101 ctaattcagc aggtgaaagc tgtttacaaa tatcaattaa ttcttggcta caagcggtca
     5161 aatttggttg agaaaatgca aaaccgtcaa tattggtttt aaaatcaagg gttttggcag
     5221 gggaaataat ggctaacata aatgcctcta tcaaatagtt aatcagggcg gttattctac
     5281 cacagtcata aagacaaaaa aggcaggaaa ccctgccttc ttgaaaacga aaagaaaagt
     5341 cgggtagcga aagtacatta ctgcacctcc gccccctaag aactgtacaa gcaaatttct
     5401 ctgcatacag ctcaagcctt tcatcagcta tatagccggc ttcacgacct ccaagttcaa
     5461 agtatgaatc tttatgtgac aagtcggatg taccaaacaa cgattgctta atgcatcgct
     5521 tcctcctaac attttgtaca cgatatgatg atcgtgccag cctgtttctt tggttattgg
     5581 caacccacat aatgcacatt ttccacgctg gtctttatac agtgcctgcc attgtcgtct
     5641 gtgtgattgt tcttcataca gacgttcttg gctcagtttt tcgccgtaca actcccattc
     5701 aggcaaaaac ggattatatt cagacttaat tttaacgtgt cgtttgattt taacatagcc
     5761 acaatagaat aagtctatcg gcttagtttc tcctttttca ttggtataaa ctgtgccaaa
     5821 tacccaattt cgagtcgctg tggtacaaaa gtatttctct tttatccaca taataccttt
     5881 attgtgatga cggcgttcac accatttcca aagtactttc caaactaatg cgtccattcg
     5941 tccgaatgcc ttacttgcaa cttggcttcg atgataattt gcccaacctc gtaacattgg
     6001 gtttagcacc attataagat cttcctgttt agccattttc atttagaaat tacctctttt
     6061 accttgttgt agaacgcttt cacattcttt tgacttggtc tgttcagtat ttttcctttg
     6121 aaacgtctca cattccaacc tagaaaatca aaaccttctt caatatgtac cactttcgtc
     6181 ttttctgttg ataaggataa acctcgttca ttcagaaagt tctggataag tgggataact
     6241 tgattttcaa gtaactcttt cgttttacct gatatgataa agtcatctgc ataacgtact
     6301 aagtaagttt tattttctcg aattgtccga ctgccttttc ctccaaaatg agtttctaac
     6361 agtttttcca atccatctaa tgccatattt gcaagcgttg gcgagataat cccaccctgt
     6421 ggtgtacctt cctctgttcg tttcaaccgt ccaaattcca ctacacctga ttttagccat
     6481 ttccgcaata tccgtttatt cattggaata tgctttaata gccagtcgtg gcttatgtgg
     6541 tcaaaacaac ctgcaatatc cgcatcaagt acccactcaa caggttgatt agttttcttg
     6601 cctttatgcg aataaattta gtgtatatga gtaatagcat ctaccgttga acggtttaat
     6661 ctaaatccat aagaaccttt atccgcagtt gtttctgcca caggttgtat tgccaataaa
     6721 taaagggctt gcattgctct atctcgcatt gttggaatac ccaacggacg tttctttcca
     6781 ttcggtttgg ggatatacac tcgtcttaat ggactaggtt tatacccttt ttccgtcaat
     6841 gatagtgcgg cttgccattt tgtctctggg gtctcccaaa gctctttatc gacaccactt
     6901 gttcgcttac cttgattttc agtcactctt cttactgcaa ctaatttagc ataatgtgag
     6961 tgggttagca ttcgttgtaa gtttttaacc ttacgccaat tgccttccag tgttgccttc
     7021 gcaatccgaa tttgcattcc tttcacatac gtttcagctt tatgccaatc gacataatgc
     7081 catttggaga tgtgcgaggt cgctggattg caagctaact tttcagtata atgcttacgc
     7141 tctttcatac ctacctctga tattacaaga taagtcgaaa gtctcagcaa gtgggtagat
     7201 ccttcaagta aacaaatccc tattgagata aactatcctt agtttattcc ctttggttac
     7261 aagaggatct taccgtttta ccgataattt caaccgctct tgtaaccgat tgggttaaag
     7321 agtcgagcgc taggttatga tgagcctaac gctcatttct ttaatttgtt tttgtaccta
     7381 ttcaacattg tattccttga taacattcaa tttctcttct gttatctaca atctctttcg
     7441 gtgttaccct taaaggaaac gctattcatc ttacgatgaa agaccagtta gaagtctgca
     7501 ccctttcggg ttaggctatg tttcacaccc tatctatgcc attacagcat agcattcgct
     7561 ttttctaacc tcccttacct gcattcccaa cagtatcgct tacgctttac ttgccttttc
     7621 ctcttttacc ttcgccatct atttcaaacg gtttgagtat tgtgggcaag gcagaaatac
     7681 aggcttacca agttccatta ctatcacacg agtagtgaag atacagtctc tcccccgaca
     7741 gtgctttgat ggcgtatcct cacgttaaag aagaataacc gactgcctac cttttggtca
     7801 gagcctatca atagctttgg ctctctctcg ataacgaggt ttatcaactg ttcacttacg
     7861 tttatctttc tacccagtct agccccttga aggtgtgcta ttcactttct cccaatgtcc
     7921 tctcacgatt tcattgactg attttcatca ggggttcatt gtcaggaagc tccgcaccac
     7981 accgttaccg gtgtcgcact atccctagac tactgttagc catataacag gttaccttat
     8041 cattccctcc gtactactca tatcttcgga ttgtttgacc gtaacaatga cagtaatagc
     8101 ttacgcatac ttactaagtc agtatcctat actgcataaa taagtccgaa cctttacaaa
     8161 ataaattcac ttatgcgact aaagtcgctt tgtctatatc caaattttcc cgcaaatagc
     8221 ctataacctg tccaataggc gaaggtagct aaccctagct aatgtgagta ttagaggtga
     8281 ttttaacgag aatttaaggt ataattatcc ctagctcata aaaacgaata aacaagagtt
     8341 tatccttagt gtttttattc actattgagg agcattctac gattaccgta gattgcgagt
     8401 gtgaaaagta taagtaaaga tggcactcct tccctaagat ttaccaagtc ttagttctga
     8461 tgtcttttct gagtgctgag gcgatctatt ggactttatt tatagtaggt gttgtaaatt
     8521 ttctctgctc tggggtatgg gtaactccgg tctgcggatc ttgctttctt actctatctt
     8581 ggtattaaga aaaaaaccaa gtacatcaaa gtgaagatca taccttacag cctttcgagt
     8641 tggttcattt actttcccaa cttagaacaa gagtgcttgg gcaaagcccc ttttctcttg
     8701 cctgtctttc caagcactcc gaagagtgct tggaaagtcg gaagcaggtg ataagaatac
     8761 cacccacttc cagcaataac tccttgatat ataaggagtt attgccataa gtacgacaac
     8821 ttgtcgcact taacgttttg agtattgtgg acgacgacgt gctttgtgta aacccacttt
     8881 tttacgttca acgcgacgtg cgtcacgagt aacgaagcct gctgcacgaa gtgctgggcg
     8941 tagcgtttca tcgtattcca ttaatgcacg agtgataccg tgacggattg cacccgcttg
     9001 accagaaata ccaccacctt taacagtgat gtaaaggtct aatttatcag ttaattcaac
     9061 caattctaac ggctgacgta cgatcatacg agctgtttca cgaccgaagt aaacttcaag
     9121 tgaacgttgg ttgatagtaa tgttacctga acccggtttg ataaatacac gggctgaaga
     9181 gcttttgcgg cgacctgtgc cgtagttttg atttgctgct gtcattttta tgctccgtga
     9241 attagatatc taaaacttgt ggttgttgtg cttggtgatt gtgttctgaa cctgcgtaaa
     9301 cttttaattt acggaacatt tcacgaccaa gtggaccttt tggtaacata cctttcactg
     9361 cgatttcaat cacagcttca ggacgacgag caatcatttc tttgaaggtt gcatctttga
     9421 tgccacctac atagccagtg tgccagtagt agattttgtc agtttgtttt ttacctgtta
     9481 ctgctacttt gtctgcattg atcacgatga tgtaatcacc ggtatcaacg tgtggagtgt
     9541 actcaggttt atgtttacca cgaagacggc gtgccaattc agtcgctaaa cgacctaatg
     9601 ttttacccgt cgcatctact acataccagt cacgttgtac tgtttctggt tttgctacaa
     9661 aagttttcat taattaaata ccaaatttaa agtttaaaac ccaatacctc attgaggtat
     9721 ttcctattat tttacggtga acccgacccc ttcgagtctg attcagacca aacttgtgtg
     9781 gcggggaaaa ccacacaaaa acagggtggc gaaattatac agagatttca ctcaaaaatc
     9841 taacattttt tgctgataat ctttcaaaat tgaacctata tcacatttta atcatttgga
     9901 gcttttcaaa taaaaactga aatgttaaaa atagcagtaa tcaatcacta aaacataagg
     9961 agtttatgat ggaacaatgg acaacagatg tttgggcagc cattatggca gcatttattg
    10021 taggtgctgt aataggttgc actctagtta gagtatttaa cagtagtgtc agaaaacagc
    10081 atgaactgga aaaagagttg aagcaaacca aaactcaagt ggatgagcaa aaacaaaaac
    10141 ttgaacaaca ctttgagcaa tcagcccaat tactttcaag tctagcttct gattataaaa
    10201 agctttatac ccatttagca caaagctctg aaaagctatt accagaagca tcaaaaaata
    10261 ttaccttttt ccaacaaacc aaattaccta ttccggcaga aaaaacggaa gaagatcaac
    10321 ctagagatta ttccgaaggt tcatctggct tactgaaatc ataaaactaa aaattgaata
    10381 tttagtttta ctaaaaggca cttagtttaa ggattgattc cgttggaatc aatcctttat
    10441 tctaaaccgc tacattaagc agttaacaac atttttcagc tttagatact gaacttaggt
    10501 tataagaagc ctattttgta agagttattc ccactcaatg gttgccggtg gttttccgct
    10561 cacgtcatac accacacggg aaataccgtt cacttcgtta ataatgcggt tggagatttt
    10621 gcctaataga tcatacggca agtgcgccca gtgagcggtc ataaagtcga tggtttccac
    10681 cgcacgcagg ctgacgaccc agtcatattt gcgtccatcg cccattacgc ccaccgattt
    10741 caccggcaag aataccgtga aagcttggct gactttgtag taccagccgg ctttgtgcag
    10801 ttcttcgatg aagatcgcat cggctttacg cagtaaatcg cagtactctt ttttgatttc
    10861 gcccagcaca cgcacgccta agcccgggcc ggggaacggg tggcggttga gcatttcagc
    10921 cggtaagccg agtgccaagc cgattttgcg cacttcgtct ttaaacaatt cacgcaacgg
    10981 ttcgactaag ccgagcttca tataatccgg caagccgcca acgttatggt gtgatttaat
    11041 cacgtgggct ttgccggttt tgctggcggc ggattcaatc acatcagggt agatcgtgcc
    11101 ttgtgcaagc catttgaccg agctaagttt tttgctttcg tcatcaaaca cgtccacaaa
    11161 cactttacca atggttttgc gtttagcttc cggttcgtct aagcctttta acgcttctaa
    11221 gaaacggtct tcggcattca ctcgcacaat gttcaaaccg aatttgttgc cgaacatttc
    11281 catgacttga tcgccttcgt tcaagcggag caagccgtta tccacaaata cgcagtgcag
    11341 gtttttaccg atagcacgat gtaatagcaa ggcggtgacg gaggaatcca ccccgcccga
    11401 caaacctaaa atcacctcgt catcgcccac ttgctcacga atgcgtttca ccgcatcttc
    11461 aatgatgttt tctgccgtcc agttcgtttc acagccgcaa atgccgacca cgaagttttt
    11521 cagcaacgcc aagccttgtt tggtgtgggt cacttcgggg tggaactgca cgccatagaa
    11581 acggcggctt tcgtccgaca tcgcggcaat cgggcaggtt ggggtaacgc ctgtgatggt
    11641 aaagtgcggt ggtaatttgg tgactttgtc gccgtgactc atccacacgt ccaattttgg
    11701 ctcgcaagcg gtcaaatcat cgtttaaatt tgcaaaaagt tgatcggcag atttgagagc
    11761 caccgaggca tagccaaatt cacggtggtc ggacgtttcg gttaaaccgc ccaactgcat
    11821 cgccattgtc tgcattccgt agcaaatgcc cagcactggc agaccagcgt taaacacata
    11881 ctccggcgct cgtgggctgt tttcctcagt ggtgctttca ggacctcctg aaagaataat
    11941 ccccgttggg ttaaattcac ggatctgctc ttccgttacg tcccaagccc aaagctcgca
    12001 gtaaacccca atctcccgca cacggcgtgc gataagctga gtatattgtg aaccgaagtc
    12061 taaaattaaa attttgtggt ggtggatgtt tgtcattgta atttccttta aattatggcg
    12121 ttgtggtcat gttaataaaa gtgccgccta ccccatcgtt tctatatgta ataataaaag
    12181 attgcgtttt attacaacct gttgcagtcc aaagttcttt tgcattacct tcacttggaa
    12241 tattgatgat ttttgtatga attttatcag gagtacattt atgtattgct tgaaaataca
    12301 gatttatatt tctttctgtg tccaacttta ataaaggact ggccgttgtt tctcctgaat
    12361 aagatggtcc gaaaatactg cacgcagata aagcga
//
LOCUS       DANMBQ010000071        12206 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.071, whole genome shotgun sequence.
ACCESSION   DANMBQ010000071 DANMBQ010000000
VERSION     DANMBQ010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12206)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12206)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12206
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.071"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..519
                     /locus_tag="PXE92_001631"
     CDS             <1..519
                     /locus_tag="PXE92_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5760862.1"
                     /translation="AGQERCIADEVPFEIPQNWIWVRLENYSLNHDRRRKPVSVAQRS
                     QQNKLYDYYGATGAIDKVASYIFDGKFILIGEDGGNFFTKKDVAFIVEGKFWANNHVH
                     VLSVDFNLEKYFCYYLNALNLPSMGLINGIAVPKLNQRNLNSILIAIPPISEQHRIVE
                     KIEKLFSEIEKF"
     gene            complement(565..1368)
                     /locus_tag="PXE92_001632"
     CDS             complement(565..1368)
                     /locus_tag="PXE92_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5760863.1"
                     /translation="MIHLFEKHLNQSNLAENTQSAYLFAVKQYHKKFDQLSKINLQRY
                     KVFLIENYKPQTVNLRLRAINYYLEFIKKEKWKLSFVKVQQKPFLENVISEADYTYFK
                     KCLKKDNELYWYFVIRFMAATGSRVSELIQIKCEHIKIGYLDLYSKGGKLRRIYIPKS
                     LQKECSEWLRLNNKHNGFIFLNKYGDRITTRGIASQLKVFARRYKLDPKIVYPHSFRH
                     RFAKSFLERFNDIAFLADLMGHESIETTRIYLRKTSTEQQEIVNKIIDW"
     gene            complement(1471..2772)
                     /locus_tag="PXE92_001633"
     CDS             complement(1471..2772)
                     /locus_tag="PXE92_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5760864.1"
                     /translation="MWVRLGDICLKITDGTHHSPPNIDKSDFLYITAKNIKKDGLDLS
                     KISYVTKEIHNEIFSRCNPEKGDILYIKDGATTGVSIINTLNEPFSMLSSVALIKTSQ
                     EIDNEYLNYVMNSHYFYNISIGSMSGTGIPRITLTKLESYLVPVPPLLEQQRIVQKIE
                     ELLPLVERYEQTEQQLTKLNNTFPEQLKKSVLHAAIQGKLTEQDPNDELASCLIERIK
                     AEKNRLIAEKKLKKPKSVSEIVMRDNLPYEIKAGQERCIADEVPFEIPQNWTWVRLGE
                     VGDWSSGATPNRHNPEYYNGTIPWLKTGDLNNGIISSIPEFITDKALQECSVRLNPVG
                     SVLIAMYGATIGKLGILKIAATTNQACCACIPFNGIYNKFLFYYLMSQKAEFQKKSEG
                     SGQPNISKEKIINYLFPLPPIHEQHRIVQKIEQLFAEIEKL"
     gene            2950..5226
                     /gene="gshAB"
                     /locus_tag="PXE92_001634"
     CDS             2950..5226
                     /gene="gshAB"
                     /locus_tag="PXE92_001634"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HDL5760865.1"
                     /translation="MKLQKLIRENHLALLFQQGNFGLEKESQRVDRNGNIVTTPHPAV
                     FGNRSYHPYIQTDFAESQLELITPPNAKLEDSFRWLSAIHEVVLRSLPEEEYIFPLSM
                     PAGLPPEEQIQEAQFDNPEDVQYRQHLSKNYGKYKQMVSGVHYNFQLSTEFVEKAFAL
                     QTEYSELKAFQNALYMKLANNFLRYQWILLYLLAATPTVESQYFYEKSPLARGQLVRS
                     LRSSPYGYVNSEKVVVNHDSLESYVESLEANVANGLLIAEKEFYSNVRLRGGKKAREL
                     LENGVKYAEFRLFDLNPFAPYGIELNDAKFIHYFLLGMLWLEETSGQKEVEIGKRKLY
                     QVALEDPRTETAFRAEGEAILNQLLAMLEELSAGQESLDLVREKLAQFADPSKTLNGR
                     LIAAIEEVGSYKALGAKLAQTYKAQAFERFYALSAFDNMELSTQALFFDLIQQGIEVE
                     VLDENDQFLALKFGDHLEYVKNGNMTSRDQYISPLIMENKVVTKKVLAKAGFNVPKSV
                     EFTNLEQAVAHYPLFEGKAVVIKPKSTNYGLGITIFQQAVKNREDFAKAVEIAFREDK
                     EVMVEDYLVGTEYRFFVLGDETLAVLLRVPANVVGDGIHSVKELVERKNDDPLRGDGS
                     RSPLKKIALGEIEQLQLKEQGLTVDSVPAKGQTVQLRANSNISTGGDSIDMTDQMHES
                     YRQIAVGIAQAMGAKVCGVDLIIPDLTKPAEPNLSSWGVIEANFNPMMMMHIFPYQGK
                     SRRLTKAVIKMLFPEIGN"
     gene            5548..6525
                     /gene="manX"
                     /locus_tag="PXE92_001635"
     CDS             5548..6525
                     /gene="manX"
                     /locus_tag="PXE92_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HDL5760866.1"
                     /translation="MSIAIIIATHGVAAEQLLKTTEMLIGEQEDVAYIDFVPGENAET
                     IMGKYQALVEGPLSHCDQVLFLVDMWGGSPFNAANRFQDGKSGMDVVAGVNIPMLVNT
                     CMARDDVESLEELVEVALEAGSTGIRSLNHQPEVAEVQTATPAQETAAVQQPEIVDDG
                     RRMTIALARIDDRLIHGQVATVWTKESKVNRIIVVNEGVAKDSVRTTMLKSVAPLGVT
                     AHVVDVPKMIRVYNNPEYADDRVMLLFTNPSDVLALIEGGVPLNSINVGGISHKEGKQ
                     MVSHSVAVDQNDIDAFKAIDAKGVELEVRKVSSDSRQYMMDLLKKHNLI"
     gene            6537..7337
                     /locus_tag="PXE92_001636"
     CDS             6537..7337
                     /locus_tag="PXE92_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005716709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HDL5760867.1"
                     /translation="MELSALQIVLLFLVACISGMGSILDEWQTHRPLIACTMIGLVLG
                     DVTTGVIVGGSLELLALGWMNIGAAVAPDAALASIVSTILVIVGRQDISTGIAIAIPL
                     AAAGQVLTYVVRAITVGFQHAADKSIEDGNLSRLDWLHRGALLLQAMRIAIPALIVAL
                     TAGTDAVQTMLNAIPEVVTTGLKIAGGFIAVVGYAMVINMMRAGHLMPFFFAGFVIAG
                     FTDFNLVALGVLGTVIAMVYIHMHPKYNKSQQVVVAAAPKNDLDNRLD"
     gene            7351..8187
                     /locus_tag="PXE92_001637"
     CDS             7351..8187
                     /locus_tag="PXE92_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005564636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HDL5760868.1"
                     /translation="MTTEIKKVTKSDLNAVVRRSNLFQGSWNFERMQALGFAYAMVPV
                     IKRLYPDPNGPGRKEAIKRHSEFFNTQPFVGAPILGVTIAMEEERANGKEIDNAAING
                     IKVGLMGPLAGVGDPIFWGTVRPVFAALGAGLALKGELLGPILFFALFNIVRLAARYY
                     GVVYGYKKGLDVVQDMSGGLLQKLTEGASILGLFIMGALVQKWTSINVPLVLSTIQKQ
                     DGTIEVTTVQSILDSLMPGLLPLLLTFACMWLLRNRVNAIWIILGFFVIGILGAATGA
                     LA"
     gene            8280..8765
                     /locus_tag="PXE92_001638"
     CDS             8280..8765
                     /locus_tag="PXE92_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HDL5760869.1"
                     /translation="MTNTILILFILLGLVFAIYDQVFMHKLKGTTLLEIRLKKQKTID
                     TWLLIGLIVLSISYGVQNQIQPFTLYLLATCIILSVYLAFFRSPRLLLKQHGFFFANV
                     FFNYDKIYQVNIAEGKADEKILVIDLHSGRRLLAYVENAEDLQPVVDFFGGYKKESEQ
                     K"
     gene            complement(8851..9642)
                     /gene="tpiA"
                     /locus_tag="PXE92_001639"
     CDS             complement(8851..9642)
                     /gene="tpiA"
                     /locus_tag="PXE92_001639"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDL5760870.1"
                     /translation="MARRPLVMGNWKLNGDKAFTKTLIADLKAELHGVEGCDVAIAPP
                     VMYLAHAEASLAGCGCGCSDKGLIALGSQNVDVNVKGAFTGDISPEMLKEFGAKYIII
                     GHSERRTYHKESDEFIAQKFKVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVI
                     NAHGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAAKSQAVADQVIIQY
                     GGSVNDANAAELFTQPDIDGALVGGVSLKAPAFAVIVKAAAAAKA"
     gene            9802..10716
                     /locus_tag="PXE92_001640"
     CDS             9802..10716
                     /locus_tag="PXE92_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HDL5760871.1"
                     /translation="MKLNYLYSPPQAVGRLKAEYADFIVREELGYELAGEGEFVAVKI
                     RKTNASTLFVGEKLAKFVGISEREMSYAGLKDRHNRKIRVGSLAGNHFELLLRDVAES
                     EELIYRLQQLQAVGFPNYFTEQRFGRDGHNLTQALRWANGEISVKDRKKRSFYLSAAR
                     SEVFNLVVSQRINDCLTQKILENDYVQLAGSNSFFCVKSDEIAETQARLAQQDLLLTA
                     PLIGERSLELECNPAEKAIIEQHAQLVALMQKERMAAARRAMLCKPQNLEWQFEQEGL
                     RLKFFLDSGSYATALVRELILLTEESEA"
     gene            10887..11675
                     /gene="surE"
                     /locus_tag="PXE92_001641"
     CDS             10887..11675
                     /gene="surE"
                     /locus_tag="PXE92_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDL5760872.1"
                     /translation="MRILISNDDGFHAVGIQTLAKALRDAGHIVTIIAPDRNRSAASS
                     CLTLVDPLRVHRFDEYNYAVIAGTPADCVHLALNGLFDGKFAEKFDLVVSGINHGANL
                     GDDVVYSGTVAAALEGRHLPLPSIAVSLVGRKHSSFLDGENHFGTAAQVVLDLLEKME
                     TQRFPSNHVLNVNVPNLPYSELKGTMITRLGERSPAAEIVKQKDPRNADVYWIGVTGE
                     PLDESFGTDFYALNRDCVSITPIQVDMTAHKTIATLKGIFNETV"
     gene            11662..>12206
                     /locus_tag="PXE92_001642"
     CDS             11662..>12206
                     /locus_tag="PXE92_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5760873.1"
                     /translation="MKLFETIYDKTMQWSKHRFAAFWLSFVSFIEAIFFPIPPDVMLI
                     PMSMAKPQNAFKYAVYTTLASVAGGVIGYFIGLYATDWVQGVIANWGMQANFDKAKLW
                     FETWGVAVVFLAGFSPIPYKVFTICAGVMQMAFFPFVITAAISRFARFILVAKLSAWG
                     GKKYEQKIRRSIELIGWGTIV"
BASE COUNT         3575 a         2360 c         2514 g         3757 t
ORIGIN      
        1 gcaggtcagg aacggtgtat cgccgatgaa gtgccatttg agattcctca aaattggatt
       61 tgggtgaggt tggaaaatta ttctttaaat catgatagaa gaagaaaacc agtatcagtt
      121 gcacagcgta gccaacaaaa taaattgtat gactattatg gagcgactgg agcaatagat
      181 aaagtggcaa gctatatttt tgatggtaag tttattttaa ttggagaaga tggaggtaat
      241 ttcttcacta aaaaagacgt tgcttttatt gttgaaggta aattttgggc aaataatcat
      301 gttcatgtat tatcagttga ttttaatttg gaaaaatatt tttgttatta tttaaatgca
      361 ttaaatttac ctagtatggg attaattaac ggaatagctg tacccaaatt aaatcaaaga
      421 aacctaaact ctattttaat tgctattcca cctatttctg aacaacatag aatcgttgaa
      481 aaaattgaaa aattattttc ggaaatagag aaattttaga aaaacttata tgtccaaggg
      541 cgtgtgaaac acgcccctta aaaattacca atcaataatt ttattcacaa tttcctgctg
      601 ttctgtgctt gtttttcgta aatagatcct tgtggtttct atgctttcgt gccccattaa
      661 atcagcaaga aaagcaatat cattaaatcg ttctaaaaaa ctttttgcaa aacgatggcg
      721 aaatgaatgt ggataaacaa ttttaggatc taatttatag cgtctagcaa atacttttaa
      781 ttggctggca atgccacgag tagtaattct atcaccatat ttatttaaga aaataaatcc
      841 attatgctta ttatttaatc tcaaccattc agaacactct ttttgcagag attttgggat
      901 gtaaattcgt cttaattttc cacctttaga atagaggtct aaatagccta ttttaatatg
      961 ttcacatttt atctggatta attcacttac tctcgaacct gttgctgcca taaaacgaat
     1021 cacaaaatac cagtatagtt cgttatcttt ttttaggcat tttttaaaat aagtataatc
     1081 agcttcacta attacatttt ccaaaaatgg tttttgttga actttaacaa aggataattt
     1141 ccatttttct tttttaataa attccagata ataatttatg gctcttagcc ttaaattaac
     1201 agtctgaggc ttatagtttt caattaagaa taccttatat cgctgtaaat tgattttaga
     1261 taactgatca aattttttgt gatattgttt taccgcaaaa agataagctg attgggtatt
     1321 ttcagcaaga ttagattgat taaggtgctt ttcaaataga tggatcatat aggtttcctt
     1381 ttaggttggt tgaaaaccga tatgataaaa gatcaataat ttagtgactg tagggcgtat
     1441 ccaacacgcc caagaaagcg atgatgactc ctacaatttt tcaatctctg caaataattg
     1501 ttcaattttt tgaacaatgc gatgttgttc gtggattggt ggtaaaggaa ataaataatt
     1561 gataattttt tcctttgata tatttggttg cccacttccc tcactttttt tctgaaattc
     1621 tgctttctgc gacatcaaat aataaaataa gaatttatta taaattccat taaaaggaat
     1681 acacgcacag caagcctgat ttgttgttgc tgctattttt aatatcccaa gcttaccaat
     1741 tgtcgctcca tacattgcta tcaaaactga accaacagga tttaatctta cagaacattc
     1801 ctgcaatgct ttatctgtaa taaattcagg tatagatgaa attattccgt tgtttaagtc
     1861 tcctgttttt agccacggga tcgtaccatt atagtattca ggattgtgtc ggtttggagt
     1921 tgcacctgaa ctccaatcac ctacttcccc caacctcacc caagtccaat tttgaggaat
     1981 ctcaaatggc acttcatcgg cgatacaccg ttcctgacct gctttgatct cataaggtaa
     2041 attatcacgc attacaatct ctgaaacact ttttggtttt ttgagttttt tctcggcaat
     2101 aagacgattt ttctccgctt ttatccgctc aatcaggcaa gatgccagtt catcattcgg
     2161 atcttgctcg gttaatttac cctgaatagc tgcgtgtaac accgattttt tcagctgttc
     2221 ggggaatgta ttgttgagtt tagtgagttg ctgttcggtt tgctcgtagc gttcaacaag
     2281 cggtaataat tcctcgattt tttgcacaat gcgctgttgt tctaggagtg gcggaactgg
     2341 gactaaataa gattctaatt tagttaatgt tattcttgga atacctgttc cagacatact
     2401 tccaatagaa atgttataaa aataatgact attcattaca taatttaagt actcattatc
     2461 tatttcttgt gaggtcttaa ttaaggcaac actggataac atactaaatg gctcattaag
     2521 agtatttata atacttactc cagttgtggc tccatcttta atatatagaa tatctccctt
     2581 ttcaggatta caacggctga aaatttcatt atgaatttct tttgttacat agctaatttt
     2641 tgataaatct aatccatctt tctttatatt tttagctgta atataaagaa aatcactctt
     2701 atcgatattt gggggagaat gatgagttcc atctgtaatt tttaggcata tatcccccaa
     2761 cctcacccac acccaactct caggaatctc aaaaggtggt tcaatggtat aaggggcttt
     2821 atccgaagca gtatttctgt tataaccaaa tcatctactt cattccaata aactaaaacc
     2881 cactatttca ctaagtcttt catttgtgtt attgtgccga tacatttttt tgactacaaa
     2941 ggatagatga tgaaactaca aaaacttatc cgagaaaatc atttagcatt gctgtttcaa
     3001 caagggaatt ttgggcttga gaaagagagc caacgggttg atcgcaacgg caatatcgtt
     3061 actactcccc accctgccgt attcggtaat cgctcttacc acccttatat tcaaaccgat
     3121 tttgccgaaa gtcagctaga gttaatcact cccccgaatg ctaaattaga agacagtttt
     3181 cgttggctct ctgctattca cgaagtggta ttgcgttcgt tgccagagga ggaatatatc
     3241 ttccctctca gtatgccggc aggcttgccg ccggaagagc aaattcaaga agcacaattt
     3301 gacaaccctg aagatgtgca atatcgccaa cacctttcca aaaactatgg gaaatataag
     3361 caaatggtaa gcggcgtgca ttataatttt caactttcaa cggaatttgt cgaaaaagcc
     3421 tttgctttac aaacggaata tagcgagctg aaagccttcc aaaacgcact ttatatgaag
     3481 ttagctaata actttttgcg ttatcaatgg attttgctct atttattggc tgccacgcct
     3541 acggtggaat cgcaatattt ttatgaaaaa tcaccgcttg cgagagggca acttgtccgc
     3601 agcttgcgtt caagccctta tggttatgtg aattcggaaa aagtggtggt taatcacgac
     3661 agcttagaaa gctatgttga aagccttgaa gccaatgttg ccaacggatt attaattgcc
     3721 gaaaaagaat tctattccaa tgtgcgttta cgagggggca aaaaagcccg tgagctattg
     3781 gaaaacggtg tgaaatacgc cgaattccgt ttatttgatt taaacccttt cgccccttac
     3841 ggcattgagc tgaatgatgc caaatttatc cattatttct tactcggtat gctttggctg
     3901 gaggaaacaa gcggtcaaaa agaggtcgaa atcggcaaac ggaaacttta ccaagtcgca
     3961 cttgaagatc caagaacaga aaccgctttc cgtgccgaag gtgaagccat tttaaatcaa
     4021 cttttagcga tgcttgaaga attatctgcc ggtcaggaaa gcctagattt ggtgcgggaa
     4081 aaattagctc aatttgctga tccaagcaaa accctgaacg gacgtttaat tgccgcaata
     4141 gaggaagtcg gcagttataa agcattgggg gctaaattgg ctcaaaccta taaggcacaa
     4201 gcctttgagc gtttttatgc gttatcggca tttgataata tggaactttc cactcaagcc
     4261 ctgttttttg atttgatcca acaagggatt gaggtggaag tactggacga aaacgatcaa
     4321 ttcctcgccc taaaatttgg cgatcatttg gaatatgtga aaaacggcaa tatgaccagc
     4381 cgagatcaat acatttcacc gctgattatg gaaaacaaag tggtgacgaa aaaagtattg
     4441 gcaaaagccg gctttaacgt gccgaaaagc gttgaattta ccaaccttga acaggctgtg
     4501 gcacattatc cgctatttga aggcaaagcg gtggtgatta agccgaaatc gactaactat
     4561 ggtttaggga ttaccatctt ccaacaagcg gtcaaaaatc gagaagattt tgcaaaagcg
     4621 gttgaaattg cgttccgtga agacaaagag gtgatggtgg aagactattt agtcggtact
     4681 gaataccgct tctttgtact gggcgatgaa acccttgcgg tgttactgcg tgtaccggcg
     4741 aatgtagtgg gagatggcat tcacagtgta aaagagctgg tggagcgtaa aaatgacgat
     4801 ccgctacgtg gcgatggctc tcgtagcccg ttgaaaaaaa ttgccttagg tgaaattgag
     4861 cagttacaac ttaaagagca aggcttaacc gtagattccg taccggcgaa aggtcaaaca
     4921 gttcaactgc gtgccaattc caacatcagc accggcggcg attcgattga tatgaccgac
     4981 caaatgcacg aaagctatag acaaattgca gtgggaattg ctcaggcaat gggggctaaa
     5041 gtgtgtgggg tggatttgat cattcctgat ctcaccaaac ctgccgagcc aaatttaagc
     5101 tcttggggcg tcattgaggc aaacttcaac ccaatgatga tgatgcacat tttcccttac
     5161 caaggcaaat cccgccgttt aaccaaagcg gtaatcaaaa tgctgtttcc tgagataggc
     5221 aattaaattt tctctctata cctcttttaa ggagaattta ctcaagaatt ctccttaatt
     5281 tatttctaaa gttttactcc aattaaattt cactttgtgc aaaacactcc aaaagaagaa
     5341 tttttttgta taagtaaaaa cgatcgaaaa tatctccgtt aacaaaatgt tataaagaaa
     5401 agacatttag cccaatttat agccaaaaaa gcttattgtc tgtgatatag atcacacttt
     5461 tgtaattaat acattgtgtg aaataattat catattaaaa tctcgcccca gtaaataaac
     5521 aacttaaaaa accgcaagga gtaacaaatg agcattgcta ttatcatagc aacccatggt
     5581 gttgctgcag agcaacttct caaaacaact gagatgttga ttggtgaaca agaagatgtt
     5641 gcttacattg actttgttcc cggcgaaaat gcagaaacga ttatgggcaa atatcaagca
     5701 ttggttgaag gtccactatc acactgtgat caagtgctgt ttttggtgga tatgtgggga
     5761 ggaagcccat tcaacgccgc aaaccgattc caagatggaa aatcgggtat ggatgttgtt
     5821 gcgggtgtga atattcctat gttagtgaac acctgtatgg ctcgtgatga tgtggagtcg
     5881 ttggaagaat tggtggaagt cgcattagaa gccggctcaa ccgggattcg ttcacttaat
     5941 caccaacctg aagtggctga ggtgcaaacc gctactcctg cacaagaaac tgcagctgtt
     6001 caacagcctg aaattgttga tgacggacgt cgtatgacca ttgcccttgc ccgtattgat
     6061 gaccgcttga ttcacggtca agttgcgacg gtttggacaa aagaaagtaa agtcaatcgc
     6121 attattgtgg taaacgaagg tgtagcaaaa gatagtgtac gaactactat gctaaaaagt
     6181 gttgctcctc ttggcgtaac ggctcacgtt gttgatgtac ctaaaatgat tcgtgtctat
     6241 aacaaccctg aatatgccga tgatcgtgta atgttactct ttaccaaccc aagtgatgtc
     6301 ttagccttaa ttgaaggcgg tgtaccactc aatagcatta acgtgggcgg tatttcgcat
     6361 aaagaaggga aacaaatggt tagccattct gtggcggttg atcaaaatga tattgatgcc
     6421 ttcaaagcaa ttgatgcgaa aggcgttgaa ttagaagtac gcaaagtctc aagcgatagc
     6481 cgtcagtata tgatggattt attgaaaaaa cataacttaa tctaaaggaa attactatgg
     6541 aactttcagc attacaaatt gtgcttttat tcctcgttgc ctgtatctca ggtatgggct
     6601 caattcttga tgaatggcaa acccaccgtc cgttaattgc ctgtacgatg ataggcttag
     6661 tgcttggtga tgtgactacc ggcgttattg ttggtggctc attagagtta ttagctttag
     6721 gttggatgaa catcggtgcc gctgttgcac cagatgcggc attagcctct attgtctcaa
     6781 ccattttagt cattgtaggt cgtcaagata tttcaactgg tatcgccatc gctattccgc
     6841 ttgcagctgc cggtcaagta ttaacctatg ttgtgcgtgc aatcaccgta ggtttccaac
     6901 acgcagcaga taaatcaatt gaagacggta acttaagccg tttagactgg ttacatcgtg
     6961 gtgctttatt gcttcaagca atgcgtattg ccattccggc attaattgtg gcattaacag
     7021 caggtacaga tgcggttcaa acaatgttaa atgccattcc tgaagtggtt acaaccgggc
     7081 tgaaaattgc cggtggcttc atcgccgtgg tgggttatgc gatggtgatc aatatgatgc
     7141 gtgcaggtca tttaatgccg ttcttcttcg caggctttgt aattgcaggc tttaccgatt
     7201 tcaatcttgt tgcccttggg gtattaggta cggttattgc aatggtttat atccatatgc
     7261 accctaaata taacaaaagc caacaggtag tggtggcagc tgcaccaaaa aatgatttag
     7321 acaaccgttt agactaagag ggcatttaaa atgacaactg aaatcaaaaa agtaacaaaa
     7381 agcgatttga atgccgttgt acgtcgttca aacttattcc aaggttcgtg gaactttgag
     7441 cgtatgcagg ctcttggttt tgcgtatgcg atggtaccgg ttatcaaacg tttatatccg
     7501 gatccaaatg gcccgggtcg caaagaagca attaaacgcc attctgagtt ctttaacacc
     7561 cagccattcg tcggtgcacc gattttaggg gtaaccattg ctatggaaga agaacgtgcc
     7621 aacggtaaag aaatcgacaa tgccgcaatt aacggtatta aagttggttt aatgggacca
     7681 ttagccggtg tgggtgaccc aattttctgg ggaactgttc gccctgtatt tgccgcatta
     7741 ggagcaggct tagccttaaa aggtgagctt ttaggcccaa tcctgttttt cgccttattt
     7801 aacatagtgc gtttagccgc acgctattat ggcgtagtgt atggctataa aaaagggtta
     7861 gatgttgtac aagatatgag cggcggttta ttgcaaaaat taaccgaagg tgcttcaatc
     7921 ttaggtctgt ttattatggg ggcattggta caaaaatgga cgagcattaa cgttccgctt
     7981 gtgctttcaa ccattcaaaa acaagacggt accatcgaag ttaccacagt gcaaagcatt
     8041 ctcgacagct taatgccggg cctactccca ttattattaa cctttgcttg tatgtggtta
     8101 cttcgtaatc gagtaaatgc tatctggatt atcctcggtt tctttgttat cggtatcctc
     8161 ggcgctgcaa ccggtgcatt agcttaattg caaaattttc tgtgaaaacg accgcttgaa
     8221 cttgaacatt caagcggttt tttatacgct ttagcccaaa taaattcact tgcttaatta
     8281 tgaccaatac catccttatt ctctttattt tacttggctt agtattcgcc atttatgacc
     8341 aagtttttat gcacaaactc aaaggcacaa ccttactgga aatccgttta aaaaagcaaa
     8401 aaacaattga tacttggtta ttgattggtt taatcgtctt gtcaattagc tatggcgtac
     8461 aaaatcaaat ccagcctttt acactttacc tgctggcgac ttgcattatt ctgtcggtct
     8521 atctcgcctt tttccgttcc cctcgcttgt tgttaaaaca gcacggtttt ttctttgcga
     8581 atgtcttttt taattacgac aagatttatc aagtcaatat tgcagaagga aaagcagacg
     8641 aaaaaatttt ggtaattgat ttacatagcg gaagaaggct gcttgcctat gttgaaaatg
     8701 cggaagatct tcaaccggta gtggattttt ttggcggtta taaaaaggaa agtgagcaga
     8761 aatagtttgc gaacaaaaca caagcggtca tttttccctg aaattttgca aaaaactgag
     8821 gaaaaatgac cgcttgtaaa atcggttaaa ttaggcttta gcagccgctg ccgctttaac
     8881 gatcaccgca aaagcaggcg ctttaagtga aacaccgcct actaatgcac cgtcaatatc
     8941 cggttgagtg aataactctg ctgcattggc atcgtttaca gagccaccgt attgaatgat
     9001 cacttggtca gccactgctt gcgatttagc tgcaatatgg tcacgaataa atttatgcac
     9061 tgcttgtgct tgtgccggag tcgctgattt gccggtaccg attgcccaaa ttggttcgta
     9121 agcaataact gcaccgttga atgcttccac accgtgcgcg ttgatgaccg catcaatttg
     9181 tcttgcacac acttcttcag ttttacctgc ttcattttcg gcttcagatt caccgataca
     9241 taatacaggc actaagccgg catcttttaa tactttgaat ttttgagcaa taaattcatc
     9301 gctttctttg tggtaagtac ggcgttctga atgcccgata ataatatatt ttgccccaaa
     9361 ctcttttaac atttcaggtg aaatatcacc ggtgaatgcc ccttttacgt tcacatcaac
     9421 gttttgtgaa ccaagtgcga ttaagccttt atcactgcaa ccacagccac aaccggcaag
     9481 tgatgcttca gcgtgtgcca aatacatcac cggtggagcg attgctacat cacagccttc
     9541 aacgccatgt aattctgctt ttaaatctgc aattaaggtt ttagtaaacg ctttatcacc
     9601 gtttaatttc cagttaccca ttacaagtgg acgacgtgcc attttgtttc tcctatatga
     9661 agttgaactt aaatataaac gttgcaaact ataccaaatt ttaatgtcgt tttgttgttt
     9721 ttattttgct ttttctgatc tagatcgaaa ggtttaacgt ataatgccga aatcttattt
     9781 tttatgttat tcgagaagtg aatgaaactg aattatttat actctcctcc tcaagctgtt
     9841 gggcgactaa aagccgaata tgcagacttt attgtgcgtg aagaactggg ctacgaacta
     9901 gccggcgaag gggaatttgt ggcggttaaa atccgcaaaa ccaacgccag cacgctgttt
     9961 gtgggggaaa agttagccaa atttgtcggt atttccgagc gtgaaatgag ttatgcaggc
    10021 ttaaaggacc gccacaaccg caaaattcgt gttggttcgc tcgccggcaa tcattttgaa
    10081 ttattgctac gtgatgtagc agaaagcgaa gagttgattt accgtttgca acagttgcaa
    10141 gcggtcggat ttcccaatta ttttaccgaa caacgtttcg ggcgagacgg acataacctg
    10201 actcaagcct tgcgttgggc aaacggggaa attagcgtga aagatcgcaa aaaacgcagt
    10261 ttctaccttt ccgctgcccg ctcggaagtg tttaatttag tggtttcaca gcggattaat
    10321 gactgcttaa cccaaaaaat cttggagaat gattacgttc aacttgccgg ctctaacagc
    10381 tttttctgcg tgaaatcgga cgaaattgct gaaactcaag cccgtttagc acagcaagat
    10441 ctacttctca ccgctccgct gataggcgaa agatcgcttg aattagaatg caatcctgct
    10501 gaaaaagcca tcatagagca acacgctcaa ttggttgcct taatgcaaaa agagcgtatg
    10561 gcagccgctc ggcgagcaat gctttgtaag ccacaaaatc tggaatggca atttgaacaa
    10621 gaagggctac ggttaaaatt ctttttagat tcaggcagtt atgccactgc actggtgcga
    10681 gagttaattc tgcttaccga agagagcgaa gcttagtcca taacacataa caagcggtaa
    10741 gattttaatc attttttgca atttgcaaaa ctttaacaaa atcttaccgc tttttgcact
    10801 tttagactaa aaaaactgtc gaaaaattgt tagaattgcg atctttgtat ttagagtcta
    10861 tcaagatgta agatctaaag gaaattatgc gaattttaat tagtaatgac gatggttttc
    10921 acgctgtcgg cattcaaact ttagccaaag ccttgcgaga tgcaggccat atcgtcacca
    10981 ttattgcacc ggatcgtaac cgcagtgcag cttcaagctg cctaacctta gtagatccac
    11041 ttcgggtgca tcgttttgat gaatataatt atgcggtgat cgccggcaca cctgccgatt
    11101 gcgtgcattt agccttaaac ggcttgtttg acggcaaatt tgcagaaaaa tttgatttgg
    11161 tggtctccgg cattaatcac ggggcaaatt taggcgatga tgtggtttac tccggtacgg
    11221 tagcggcagc attggaaggc cgccacttgc cattaccaag tattgcagta tcactggttg
    11281 ggcgtaaaca ctcttcgttt ttagacggtg aaaatcattt tggaacggca gcacaggtag
    11341 tgttagattt attggaaaaa atggaaacgc aacgttttcc atcaaaccac gttctcaatg
    11401 ttaatgtgcc gaatttacct tattcagagc taaaaggcac aatgatcacc cgcttaggtg
    11461 aacgttcacc cgctgcggaa attgtgaagc aaaaagatcc tcgtaatgct gatgtctatt
    11521 ggattggtgt aacaggtgaa ccactggatg aaagttttgg tactgatttt tatgcattaa
    11581 accgagattg cgtttctatc acaccaattc aagtggatat gaccgctcat aaaacgatag
    11641 caaccttaaa aggcattttt aatgaaactg tttgaaacaa tttatgacaa aacaatgcag
    11701 tggtctaagc accgcttcgc tgccttttgg ttgagttttg tcagttttat cgaggcgatc
    11761 tttttcccga ttccgccgga tgtgatgttg attccgatgt cgatggcaaa accgcaaaat
    11821 gcgtttaaat atgcagttta cactaccctt gcttcggttg ccggtggtgt tattggttat
    11881 tttattggct tatatgctac cgattgggtg caaggcgtca tcgcaaattg gggaatgcaa
    11941 gcaaactttg ataaagcaaa attgtggttt gaaacttggg gtgtcgcggt agtattttta
    12001 gccggttttt cgccgattcc ctataaggta tttaccatct gtgccggtgt aatgcagatg
    12061 gcgttcttcc cgtttgtgat tactgctgcg atttctcgct ttgcccgttt tattttggta
    12121 gcaaaactct ctgcttgggg tggcaaaaaa tatgaacaaa aaattcgccg ctcaattgaa
    12181 ttaattggtt ggggaacaat cgtttt
//
LOCUS       DANMBQ010000072        12185 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.072, whole genome shotgun sequence.
ACCESSION   DANMBQ010000072 DANMBQ010000000
VERSION     DANMBQ010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12185
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.072"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..421
                     /locus_tag="PXE92_001643"
     CDS             <1..421
                     /locus_tag="PXE92_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760874.1"
                     /translation="EIKSKLKLEINKDKTEVVKFQYCNRTKKIINEKKLQYLGFILHN
                     NSISIRSSAFTRYSNKMKRGVSLAKQTQGKYNRIRIRRGVAIKGIYKRKLFSKYSHFG
                     KSNFISYGKRAYSSMDSKVIKNQLKPLWYRLKKEIYL"
     gene            complement(673..1953)
                     /gene="hemL"
                     /locus_tag="PXE92_001644"
     CDS             complement(673..1953)
                     /gene="hemL"
                     /locus_tag="PXE92_001644"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDL5760875.1"
                     /translation="MSISEQLFEQAQKVIPGGVNSPVRAFKGVGGTPVFIEKAEGAYI
                     TDSDGKQYIDYVGSWGPMVLGHNHPAIIDAVLKAVPKGLSFGAPTAAEITLAELVCKL
                     VPSIEMVRMVSSGTEATMSAIRLARGYTNRDKIIKFEGCYHGHSDSLLVKAGSGALTL
                     GQPSGPGVPADFAKHTLTCTYNDLDSVKAAFEQYPNEIACLIVEPVAGNMNCIPPQEG
                     FLQGLRDLCTQYGAVFIIDEVMTGFRVALGGAQSYYGVTPDLTTLGKIIGGGMPVGAF
                     GGKKEIMEYIAPTGPVYQAGTLSGNPIAMAAGLACLTELSKAGNETILAEKTKTLAEG
                     FKALADKHNVPLTVQYVGGMFGLFFTEQKAVNNFQEVMKCDAAKFNRFFHLMLEQGVY
                     LAPSAFEAGFMSLAHSDEDIARTLEAADKAFAQL"
     gene            2095..3159
                     /gene="wecA"
                     /locus_tag="PXE92_001645"
     CDS             2095..3159
                     /gene="wecA"
                     /locus_tag="PXE92_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HDL5760876.1"
                     /translation="MWLTFLTVFIVSFLALIVMRPVAEFVGLVDKPNFRKRHQGLIPL
                     IGGIALFIGNLTFYFMQWQDMRLPELYLTAVTILLIIGVLDDRFDISPLLRAGIQAAL
                     AGAMIYSGLSLSSLGQIIAPFSIELGWLGIVFTVFITIGVINAFNMVDGIDGLLAGLS
                     SVSFAGLGTLMFINGEPSLGYWCFALIFVLLPYAMFNLSLFGAKWKVFMGDSGSMLIG
                     FTIIWILLLSTQGQGSPISPITGLWLIAVPLIDMVAVIIRRLKKGKSPFKPDRLHLHH
                     LMMRAGLTSRQALLVITLWAGFCSTIGVLGEVYYWNQWVMMLMFIGLFFLYAYSITHA
                     WRVTRFVRRLKRRAKRSKQL"
     gene            3170..3982
                     /locus_tag="PXE92_001646"
                     /pseudo
     CDS             3170..3982
                     /locus_tag="PXE92_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248465.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LPS chain length-determining protein"
     gene            4023..5270
                     /gene="wecC"
                     /locus_tag="PXE92_001647"
     CDS             4023..5270
                     /gene="wecC"
                     /locus_tag="PXE92_001647"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL5760877.1"
                     /translation="MMSKTEFNTICILGLGYIGLPTSVVFANAGKQVIGVDINPQVVA
                     SLNQGNIHIIEPDLQTAFTQAVKKGNFFATAKPQPADAFIIAVPTPLCGKQPDLTYIQ
                     NAAAMIAPCLRKGNLVVLESTSPVGTTENLAEWLSQARPDLAFPADVSIAYCPERVLP
                     GNIMTELVENDRIIGGLSEQCSQQAVDLYQIFAKGRCVTTTARTAEMCKLVENSFRDV
                     NIAFANEISMICDALKINVWELIELANLHPRVNILQPGAGVGGHCLAVDPWFIVSTSP
                     QQARLIRTAREVNDSKPQWVIEQVKTSVADCAMEQDCKPSELTIACLGLAFKPNIDDL
                     RESPALAITRQLAAWHQGSLLAVEPNIQQLAGEKITLVDLNTALSQADILVLLVDHTS
                     FKQISREQIRQRHIIDCRGVWVR"
     gene            5267..5911
                     /gene="rffC"
                     /locus_tag="PXE92_001648"
                     /gene_synonym="wecD"
     CDS             5267..5911
                     /gene="rffC"
                     /locus_tag="PXE92_001648"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HDL5760878.1"
                     /translation="MKPDQWLSDFFGREIVQVKVAADDFRQIARLQKQGFVLVEGELE
                     FELALATFSENMTACRPADMADLPDLNLLFGSAFPDSRFRSPYFSREENQRFYRTWIE
                     NAVKGKFDDIGLVQCNADGQIQGAVTVRLLAQQQAKIGLLAVKPDCRQQGIGSELLNA
                     AIAWAKQQNAKKLMITTQLSNQKAIRFYQAFGASIKAVYYWFYPALEKYDDEQS"
     gene            5898..7041
                     /gene="rffA"
                     /locus_tag="PXE92_001649"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /pseudo
     CDS             5898..7041
                     /gene="rffA"
                     /locus_tag="PXE92_001649"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251256.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
     gene            complement(7085..8506)
                     /gene="glnA"
                     /locus_tag="PXE92_001650"
     CDS             complement(7085..8506)
                     /gene="glnA"
                     /locus_tag="PXE92_001650"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011298219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDL5760879.1"
                     /translation="MSNAIANVSKLIQDNDIKFVLLKFTDIKGKEHGVSLPVSLVAND
                     LEDLFEEGKMFDGSSVEGWKAINKADMLLMPIAETAVVDPFARIPTLSIRCSIYDPNT
                     MQSYDRDPRSIATRAENYLKSTGIADSVMFGPEPEFFLFDDVRFSTEMNNVSYRIDDV
                     EAAWNTNRKFEEGNKAYRPLKKGGYCAVAPIDTAHDIRSEMCLLMEEMGLVIEAHHHE
                     VATAGQNEIATRFNSLTLKADETQIYKYIVQNVAVEHGKTACFMPKPFAGDNGSGMHC
                     NMSLSKDGKNVFMGDKYAGLSETALYYIGGIIKHAKALNAFTNPTTNSYKRLVPGFEA
                     PVLLAYSASNRSASIRIPAVTSPKATRVEARFPDPMANPYLCFAALLMAGLDGVINKI
                     HPGDAMDKNLYDLPPEELKDIPTVASSLESALDALSNDFEFLTQGGVFTKDFIDAYIG
                     IRRKEVERVNMTPHPVEFELYYS"
     gene            8693..9763
                     /locus_tag="PXE92_001651"
     CDS             8693..9763
                     /locus_tag="PXE92_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HDL5760880.1"
                     /translation="MLPIYHILGSEIEHHNQQVLTFFQQELLPLLPDSEHFFYVVGKP
                     SLQTAFPHLRIKQFSSQKAIANALIAKKRQNPTACFLLHGQFNPWIWLAIALGRLPTT
                     NLIWHIWGADLYEMATSWKFKLFYPFRRVAQQKILQVWATRGDLDHLWRNMRTRSEQD
                     HLIYFPTKLGDQIKISPTQNDRLTILLGNSGDPANELIQALSEIHQRLGNNVRIIIPM
                     GYPENNESYIRQVEAYSKRLFLAENLQILRKKLSFEEYVTLLSHCDLGYFNFKRQQGI
                     GTISLLISHNVPCVLHSANPFGLDLQAEKVPYLLAENLTASQIQTTKQQLKSIDKNRI
                     AFFAPGYTKLWQQRLIELMQNE"
     gene            9756..11027
                     /locus_tag="PXE92_001652"
     CDS             9756..11027
                     /locus_tag="PXE92_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WzyE family oligosaccharide polymerase"
                     /protein_id="HDL5760881.1"
                     /translation="MNNLIPLGGFYLVSVGLFFSLLYQLYQKSGISFHLLFSLLYFVT
                     FYAGFPFSLIMAFGFDYPLPELKTQWQVFTAAGVGYLIYYVVYSRLWSAVSQPTALVA
                     NFQAKTTACILAAVAVVALLYFLYLNGFLLFKLEKYSQLFAKDRVILSALKRFFYFLL
                     PALLIFCFLYKNKTAWWALLIVGGAFGILSYVAVGGTWANLALAVGFFLLIGLQQGYL
                     SLSKVIAVSLIGVVAMFFLALARYKLTLSGSEMIYTFLYLSRDTFSPWENLARVFSNE
                     VEYQGLMPIVRDFYVYIPQSLWQERPEIVWNTANYFTKVILGNQSGLAISPTLLGSFY
                     IMGGFSVMALGMGIVAAMIKALDNLFAYAKACNSALLQAYCFGNLFNLIVLVREGIDA
                     FVSRFCFFTLIFMACYLLAKILSMGKNNNVR"
     gene            11017..11739
                     /gene="rffM"
                     /locus_tag="PXE92_001653"
     CDS             11017..11739
                     /gene="rffM"
                     /locus_tag="PXE92_001653"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HDL5760882.1"
                     /translation="MFDKVIIRGIALQAVKNREIFANWLMNEKRIQFGRLVAINAEKV
                     ILSEKNPLLRRVIDEAEFNYADGISVVQSIRKKYPNYKIERIAGADLWETLMQRAGAL
                     NVPVFLVGSSADTLTKVEAKLAQWKVNIVGRQNGYFKAEQEQDVIEQIKASGAKFISV
                     AMGTPKQELFIQQLQQQYPQALYMGVGGTYDVFAGKVKRAPKIWQNLGLEWLYRLLKQ
                     PTRWQRQLNLLKYAYYYLTNQL"
     gene            11898..11974
                     /locus_tag="PXE92_001654"
     tRNA            11898..11974
                     /locus_tag="PXE92_001654"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11932..11934,aa:Arg,seq:ccg)
     gene            12004..12079
                     /locus_tag="PXE92_001655"
     tRNA            12004..12079
                     /locus_tag="PXE92_001655"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12037..12039,aa:His,seq:gtg)
     gene            12104..12180
                     /locus_tag="PXE92_001656"
     tRNA            12104..12180
                     /locus_tag="PXE92_001656"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12138..12140,aa:Pro,seq:tgg)
BASE COUNT         3326 a         2441 c         2817 g         3601 t
ORIGIN      
        1 ggagataaaa agtaaattaa aactagagat aaataaggat aaaactgagg ttgttaaatt
       61 ccaatattgt aatagaacaa aaaaaataat taatgaaaag aagttacaat atcttggttt
      121 tatattgcat aataactcta ttagtattag atcatcggca tttacacgat attcaaataa
      181 aatgaaacga ggggttagtc tagctaagca aactcagggt aaatataata ggataagaat
      241 aagacgaggg gtagctatca aaggcattta taaaagaaag ctattttcta agtattctca
      301 tttcggaaaa tctaatttta tctcttatgg aaagagagct tattcatcta tggattccaa
      361 agttataaag aaccaactta aacctttatg gtatagatta aagaaagaaa tatatttgta
      421 atattagaaa gtgtaagact tgtccttgcc tgcaagtgtt ggaagcccat atattgcttt
      481 atcaatccta ttccctcgat agcgcccgtc tccagacggg tgcttgttta agcataatga
      541 aagtttgtat aagcactcgt cagagacgaa caccatcata attgctatcg taagagaaat
      601 ttgcactaca agcggtcaaa ttccctcaaa aacttgcaaa ttattgagta aacccaaccg
      661 cttgtcattc ttctaaagct gagcaaatgc cttatccgca gcctctagcg tacgagcaat
      721 atcttcatca ctgtgagcta aagacataaa ccctgcctcg aatgccgatg gggctaaata
      781 cacgccttgt tccagcatta agtggaagaa acggttgaat ttggcggcat cacatttcat
      841 tacttcttgg aagttgttta ctgctttttg ttcggtgaag aataagccga acattccgcc
      901 gacatattgt accgttaatg gcacattgtg cttatctgca agagctttaa agccttcagc
      961 gagggttttg gttttttccg ctaaaatggt ttcatttcct gcttttgata attcagttaa
     1021 gcatgccaaa cctgcagcca ttgcaatcgg gttgcctgag agcgtgccgg cttggtaaac
     1081 cgggccagtt ggagcgatgt attccataat ctctttttta ccaccaaatg cccccaccgg
     1141 cattccgccg ccgataattt tgccgagtgt ggttaaatcc ggtgttaccc catagtaaga
     1201 ttgagcccca ccgagtgcga cacggaagcc ggtcattact tcatcaataa taaataccgc
     1261 accatattgt gtgcaaagat cacgtaagcc ttgtaaaaag ccttcttgtg gcggaatgca
     1321 gttcatattg ccggcaacag gctcaacaat taaacaagcg atctcatttg ggtattgctc
     1381 aaatgctgct tttactgaat ctaaatcatt ataggtgcaa gtaagcgtat gcttggcgaa
     1441 atcagcgggt acgcccgggc cgcttggctg accgagggtt aaagcacctg aaccggcttt
     1501 tactaacaga gaatcggaat gcccgtggta gcagccttca aatttgatga ttttatctcg
     1561 gttggtatag ccacgagcca aacgaatggc agacattgtt gcctctgttc cgctgctcac
     1621 cattctcacc atttcaatag aaggtactaa tttgcacact aattcggcaa gtgtgatttc
     1681 tgctgccgtt ggggcaccga aacttaagcc ttttggcacg gcttttagca ccgcatcaat
     1741 aatcgccggg tggttatgcc cgagtaccat tggcccccaa gagccgacat agtcgatata
     1801 ttgtttgccg tcgctgtcgg taatataagc accttcggct ttttcaataa aaaccggtgt
     1861 gccgcccacg cctttaaatg cacgcacagg ggagttcaca ccgcccggaa tcactttttg
     1921 ggcttgttca aacagttgtt ctgaaataga catatcaatt cctttctttt gatgtaaaaa
     1981 tttgcctgtt attgtactga aaagcccttg ttttcgctaa aaaatttacg attttgttgc
     2041 cttatgctat tctgcattcc tattttatga ctcatttttt gaggcaatcc ctgtatgtgg
     2101 cttacttttt taaccgtatt tattgtttct tttttagccc tgattgtgat gcgtccggtg
     2161 gcggaatttg ttggtttggt agataagccc aacttccgta aacgccatca ggggttgatt
     2221 ccgttaatcg gtggtattgc attatttatc ggcaatctca ctttctattt tatgcagtgg
     2281 caagatatgc ggctgccgga actgtatctg acagcggtaa ctattttgct gattatcggc
     2341 gtgttagatg accgatttga catcagccca ttactgcgtg ccgggattca agcagcacta
     2401 gctggggcga tgatttacag tggcttgtcg ctcagcagtt tagggcaaat tattgccccc
     2461 tttagtatag aattaggttg gctcggcatt gtctttaccg tgtttatcac cattggcgtt
     2521 attaatgcgt ttaatatggt agatgggatt gatggcttat tagcagggct ttccagcgtg
     2581 agttttgccg gtcttggcac tttaatgttc attaatggcg aaccaagttt gggctattgg
     2641 tgctttgccc ttatctttgt gttgttgccg tatgcaatgt tcaatttgag cctgtttggg
     2701 gcgaaatgga aagtgtttat gggcgactca ggcagtatgc tgatcggctt taccattatt
     2761 tggattctgc tgttaagcac ccaagggcaa ggctcgccaa ttagcccgat taccggtttg
     2821 tggctgattg ccgtgccgtt aattgatatg gttgcggtga ttatccgccg tttgaaaaaa
     2881 ggtaaaagtc cgttcaaacc agaccgcttg cacctacacc atttaatgat gcgagcaggg
     2941 cttacctctc gccaagcatt attggtgatt accctctggg cgggattttg ttccaccatt
     3001 ggggtattag gcgaggtgta ttattggaat cagtgggtga tgatgctaat gtttatcggg
     3061 ctgtttttcc tatacgccta ttccattacc cacgcttggc gtgtaacccg ttttgttcgc
     3121 cgtctaaaac gccgtgcaaa acgtagcaaa caactttaaa ggatatgttg tgaaaacctt
     3181 attttatcga cttttagtgc taattttatt tgctgctatc ggggcaggtg ccggttatgg
     3241 gctgagttat actcaacctg aaaaatggaa agtgaccgct caatttgagc aaccgactat
     3301 tcccgattta ggtaattatt actcgttact ttccacctac cattttttga atagtaatag
     3361 ccaagaagcg aatagccaaa cggcacagca acaggcaagt gagcaggttt atgcggaatt
     3421 taaacgcaac ctcacgtccg ccgacttgct tcaagcctat ttgctacaaa cagaagcggt
     3481 gaaattaaaa gctcaggttg caaagaaatc accggcggtg gtggcggctg aattagttga
     3541 acaattccgt tttgaaaaag atatggcaac ttcggcagat aatgtcagct taattgcaga
     3601 aaatgcggaa gaggctcaaa aattattagc cgattttatt ccgttggtaa acacctaagc
     3661 tcgagataaa ttaaacgccg atttaattgc gaaatggaaa gtcttgttcc agcaaattaa
     3721 aactgcttcg gagttgaata ttaacggtaa gcaaggctca caagattggg cagctaaact
     3781 gcaaatgatg cgttctgttc agccgttaga caaccaactt acagcttatc gcttggttaa
     3841 atcgcctagc gttccactta aatcagaatc gcctgatccg cctattttgg ctgatgattg
     3901 gggcattaag tggcttactg ctgggcttta tgctcagttt tgcggtgaaa gcgaaagctc
     3961 aacctgcgga actttaatct aaaatggcac acaatttagt gtgccatttc tctttgtaac
     4021 tgatgatgag taaaactgaa tttaacacta tttgtattct ggggttaggc tatatcggct
     4081 tgccgacctc agtcgttttt gccaatgccg gcaagcaagt aattggggtg gatattaatc
     4141 cgcaagtggt ggcaagcctt aatcaaggca acattcatat tatcgagccg gatttacaaa
     4201 ctgccttcac acaagcggtc aaaaaaggta atttttttgc aactgccaaa ccgcaaccgg
     4261 ccgatgcttt tatcatcgcc gtgccaaccc cactttgcgg gaagcagccc gatctcactt
     4321 atattcaaaa tgccgccgct atgattgccc cttgtttgcg taaagggaat ttggtggtgc
     4381 tggagtccac ttcgcctgtc ggtacaacag aaaatttagc cgaatggcta agccaagctc
     4441 gccctgattt agcctttcca gccgatgtgt ctattgccta ctgccctgaa cgtgttttgc
     4501 cgggtaatat aatgacggaa ttggttgaaa atgaccgcat tatcggcgga ttaagcgaac
     4561 aatgcagtca acaagcggtc gatttatacc aaatttttgc aaaaggacgt tgtgtcacca
     4621 ccacagctcg cacagcggag atgtgcaagt tggtggaaaa cagctttcgt gatgtgaaca
     4681 ttgcctttgc caatgaaatt tcaatgattt gtgatgcgtt gaagatcaat gtgtgggagc
     4741 taattgaatt ggcaaatctt cacccgagag taaatattct ccagcccgga gcaggggtgg
     4801 gcggacattg tttggcggtt gacccgtggt ttatcgtttc cacatcgccc caacaggctc
     4861 gccttattcg cacggcacga gaagtgaatg acagcaaacc gcaatgggta atcgagcaag
     4921 tgaaaacatc ggtcgcagac tgtgcgatgg agcaagattg taagccaagt gagctaacca
     4981 tcgcttgttt agggctagct ttcaagccga atattgatga tttgcgggaa agcccggcat
     5041 tagcgattac ccggcaactt gccgcttggc atcagggtag cctgttggcg gttgagccaa
     5101 atattcaaca gctggctggc gaaaaaatca ccttagtcga tctcaacacc gcactttcgc
     5161 aggcagacat tttagtcttg ttagtggatc acacttcatt taagcaaatt tcaagggaac
     5221 agatcaggca acggcatatt attgattgtc gaggagtgtg ggtaagatga agccggatca
     5281 atggctgtcc gattttttcg gtagagaaat tgtgcaagta aaagtagcgg ctgatgattt
     5341 taggcaaatc gctaggttgc aaaaacaagg ttttgtactt gtggagggag aattggaatt
     5401 tgagctggca cttgcaacat tttctgaaaa tatgaccgct tgtcgcccgg cggatatggc
     5461 agatttgccc gacttgaact tattgtttgg ttcggcattt cccgatagcc ggtttcgttc
     5521 gccctatttt tcaagggaag agaatcaacg cttttaccgg acttggattg aaaatgcggt
     5581 aaaaggcaag tttgatgata ttggcttggt tcaatgcaat gctgacgggc aaattcaagg
     5641 ggcggtaacg gttcgcttac ttgcccaaca gcaagcgaaa atcggattat tggcggtaaa
     5701 gcctgattgc cgacaacaag gtattggctc ggaattgtta aatgctgcga tagcgtgggc
     5761 gaaacagcaa aatgcgaaaa aactgatgat taccactcag ctgagtaacc agaaagcgat
     5821 tcgtttttat caagcgtttg gtgcaagcat taaggcggtg tattattggt tttaccctgc
     5881 tttggaaaaa tacgatgatg aacaatcctg attttattcc gtttaatcaa cccccggttg
     5941 tgggggcgga gcaagcctat atagaacagg cgatggcaac agggcagctt tcgggcggtg
     6001 gtaaattcac ccgcttatgt gagcagtggc ttgaaaacct ggcccgtagc aaagtgttgc
     6061 ttaccccttc ttgcacggct gcgttagaga tggcggcaat actgctggat attcagccgg
     6121 acgatgaagt gattatgccg agctatactt ttgtctctac tgcaaatgcg tttgcgttgc
     6181 gtggggcaaa gattgtgttt gtggatattc gtccggatac aatgaatatt gatgaacgca
     6241 aaattgagca agccattacc ccaaaaacca aagtgattgt gccggtgcat tatgccggca
     6301 ttgcttgtga tatggattca ataatggcaa cagccgaaaa atacgggctt tatgtggtag
     6361 aagatgcggc acaggcagtc aattcgtttt ataaaggtag ggcgttaggt tccatcgggc
     6421 atattggttg ctatagtttt cacgaaacca aaaactatac cgctggcggt gaaggtgggg
     6481 cgatcgtgat taatgaggca tttgctggaa aaagcggaaa tcatcagaga gaaaggcact
     6541 aaccgtagcc aattttttcg tggtgaggta gataaatatc gctggcagga tattggttca
     6601 agttttttaa tgtcggaaat tcaagcggct tatttgtatg ctcagcttat agaggcagat
     6661 aaaatcaacc aacagcgttt aaccctttgg cacaattact atcaagcctt tttgccactt
     6721 gcccaaacag ctaagtgcga gcttcctcgc attggcgaat attgtcgcca taacgggcat
     6781 ttgttctact taaagctaag tgacttgaag cagagaactg cttttattga ttttatgaag
     6841 gcacagaata tcttaaccgt gtttcattat gtgccgttgc acagcagtcc ggcagggcag
     6901 aaattaggtc gattagcagg tgatgatcgc tttactacct tagaaagcga acggttggta
     6961 agattgccac tgttttataa tttgagtaag caggagcaag agcgtgttat tcaagcagtg
     7021 cttgctttct tcaatcaata aaaaacggct gagtgtttca gccgtttttt gctatatgtt
     7081 gttactatga atagtaaagt tcaaattcta ccgggtgcgg agtcatattt acacgttcca
     7141 cctctttgcg acgaataccg atataagcat caataaagtc tttcgtgaac acgccacctt
     7201 gtgttaagaa ttcaaaatca ttgcttaatg cgtcaagagc ggattctaaa gacgaggcaa
     7261 ccgttggaat atcttttaac tcttccggcg gtaaatcgta taagttttta tccattgcat
     7321 cgcccgggtg gattttgttg atcacaccgt ctaagccagc cattaacagg gcggcaaagc
     7381 aaaggtatgg gtttgccatt ggatccggga agcgtgcttc tacacgggtc gctttcggac
     7441 tggtcacagc cggaatacgg atagaggcag agcggttact tgcagaatat gccaataaca
     7501 ccggtgcttc aaaacccggc actaaacgtt tataagagtt cgtggttggg ttagtaaagg
     7561 catttaatgc ttttgcgtgt ttaatgatac cgccaatata gtagagggca gtttcagata
     7621 agccggcgta tttatcgccc ataaacacat ttttgccgtc tttgcttaat gacatattac
     7681 agtgcattcc cgagccgttg tcgccggcga acggttttgg cataaagcaa gcggtttttc
     7741 cgtgttctac ggcaacattt tgcacgatgt atttatagat ttgggtttca tcggctttta
     7801 aggtcaggct gttgaatcgg gttgcgatct cattttgtcc ggctgtcgca acttcgtggt
     7861 ggtgagcttc aatcactaaa cccatctctt ccatcaataa acacatttcg gagcgaatat
     7921 cgtgggcggt atcaatcggt gcaaccgcac agtagccgcc ttttttcaac ggacgatagg
     7981 ctttgttgcc ttcttcaaat ttacggttgg tattccaagc cgcttctaca tcgtcaattc
     8041 ggtatgacac attgttcatt tcggtgctaa aacgcacatc atcgaataag aaaaattcag
     8101 gctcaggtcc aaacattacg ctatcggcga taccggtgga tttcaagtag ttttcggcac
     8161 gggttgcaat agagcgaggg tcacggtcat aagactgcat tgtgtttggg tcgtaaatgg
     8221 aacaacgaat agaaagggta ggaatacggg cgaaagggtc aactacagcg gtttcagcaa
     8281 tcggcattaa caacatatct gctttgttaa ttgccttcca accttctacg gacgaaccgt
     8341 cgaacatttt gccttcctcg aataagtctt ccaaatcgtt ggcaactaag ctgacaggga
     8401 gcgaaacccc gtgttcttta cctttaatat cagtaaattt taataagaca aatttaatat
     8461 cattgtcttg aatcagttta gatacattag cgattgcgtt tgacatagta aaataagtcc
     8521 tcgttgggat aaatgaataa taaaaaagct cggttatcat agcatttttt aaccaagtgt
     8581 gtgatgtttt ttagtgtttc aaagctaaaa gaagttgcag taatgttgca aatttttgct
     8641 aaaatcttac cgcttgcata ttgtttgtat ggtggggaga gaaaagcgtg taatgttgcc
     8701 gatttatcat attctaggct ccgagattga gcatcataac caacaggttt taaccttttt
     8761 tcagcaagag cttttgccgt tattgccaga ctccgaacat tttttttatg tggtaggcaa
     8821 gccttcactg caaactgctt ttcctcattt gcggattaag cagttctctt cacaaaaagc
     8881 gattgcgaac gccttaattg caaaaaaacg gcaaaatccg accgcttgtt ttctgttaca
     8941 cgggcagttt aacccttgga tttggctggc gatagcctta ggcagattgc cgaccaccaa
     9001 cctgatttgg catatttggg gggcggattt atatgaaatg gcaacttcgt ggaaatttaa
     9061 gctgttttac ccgtttcggc gtgttgccca acaaaaaatc ttacaggttt gggcaacaag
     9121 aggcgatctg gatcatttgt ggcgaaatat gcgtacaaga tcagaacagg atcatttaat
     9181 ctatttcccc acgaaattag gtgatcaaat aaaaattagc cccacacaaa atgatcgctt
     9241 gacgatattg ctcggcaatt caggcgatcc agcgaatgag cttattcaag ccttaagcga
     9301 gattcatcaa cgactaggga acaatgtgcg gattatcata ccaatgggct acccggaaaa
     9361 taatgaaagc tatattcggc aggtggaagc ctatagcaag cggttatttt tggcggaaaa
     9421 tttgcaaatt ttgcggaaga agctgagctt tgaagagtat gttacgttat tgagccattg
     9481 tgatctcggc tatttcaatt ttaaacgcca gcaaggcatt ggcacgataa gccttttgat
     9541 tagccataat gtaccttgtg tgttacattc agccaatccg tttgggttgg atctacaggc
     9601 agaaaaagtg ccttatttgt tggcggaaaa tctgactgct tcacagattc aaacaaccaa
     9661 acaacaacta aagagcatag ataaaaaccg cattgcgttt tttgctccgg gctacactaa
     9721 actatggcaa cagcgattaa tcgaattaat gcaaaatgaa taatttaata ccacttggcg
     9781 gattttatct tgtttctgtc gggctatttt tcagcttact ttatcaactt tatcagaaat
     9841 cggggatttc tttccattta ctgtttagtt tgctctattt tgttactttt tacgccggtt
     9901 ttccgttttc gttaataatg gcatttggct ttgattaccc gctgccggag ctaaaaacac
     9961 aatggcaagt ttttacggca gcaggtgttg gctatttgat ttattacgtt gtctattcac
    10021 gcttgtggag tgctgtgtcg caaccaactg ctcttgttgc aaattttcag gcaaaaacga
    10081 ccgcttgtat ccttgccgct gtggcagttg ttgccctgct atatttcctt tatttaaacg
    10141 gttttctgct tttcaaactc gaaaaatata gccaactgtt tgccaaagat agggtcatac
    10201 tttcggcatt aaaacgattt ttctactttt tattgccggc gttgttaatt ttttgcttcc
    10261 tatataagaa taaaacagcg tggtgggcgt tactgattgt tggtggggca ttcggcatat
    10321 taagctatgt ggcagtgggc ggcacatggg caaatttagc actagcggtt ggctttttct
    10381 tattgattgg attgcagcaa ggctatctgt cgttatcaaa ggtgattgcc gtaagcctaa
    10441 tcggcgtggt ggcgatgttc ttcctcgctc tagcccgtta caaacttacc ctttccggta
    10501 gcgagatgat ttacaccttc ttatatttaa gccgagatac tttttcgcct tgggaaaatt
    10561 tggctcgtgt attttctaat gaggtggaat atcaaggttt aatgccgatt gtgcgggatt
    10621 tctatgtata tatcccacaa tctttatggc aagaacgccc tgagatcgtc tggaatacgg
    10681 cgaattattt taccaaagtg attttaggca accaatcagg gttagctatt tcgcctacct
    10741 tactcggctc tttctatatt atgggcggat ttagcgttat ggcgttggga atggggatag
    10801 tagctgccat gattaaagcc ttagataacc tattcgctta cgccaaagcg tgcaattccg
    10861 ccttgttgca agcctactgc ttcggcaatt tattcaattt gatcgtatta gtgcgagagg
    10921 gaatcgatgc atttgtttcc cgtttttgct ttttcacgct gatatttatg gcttgctatt
    10981 tgctggcgaa aatcctttca atggggaaaa ataataatgt tcgataaagt gatcattcgg
    11041 ggcattgcgt tacaagcggt caaaaatcgg gaaatttttg caaattggct gatgaatgaa
    11101 aagcggattc agttcggaag attagtggca attaatgctg agaaagtgat tctgtcggaa
    11161 aaaaatccgt tgttacgccg agtgatagat gaagccgagt tcaactatgc agacggcatc
    11221 agtgttgttc aatcgattcg aaaaaaatat ccaaactata aaatagagcg aattgccgga
    11281 gccgatttat gggaaacctt aatgcaaaga gccggagcgt taaatgtgcc ggtgtttttg
    11341 gtcggcagct cggcggatac cctaacgaag gtggaagcaa aattggcaca atggaaggtg
    11401 aatattgtcg gtaggcagaa tggctatttt aaggcggagc aagaacagga cgttatagag
    11461 caaattaaag caagtggcgc gaagtttatt agtgtggcaa tgggaactcc aaaacaggaa
    11521 ctttttatcc aacagttaca acaacaatat ccacaagcct tatatatggg tgttggcggg
    11581 acttacgatg tgtttgccgg taaagtgaaa cgagcaccta aaatttggca aaatttgggg
    11641 ctggaatggc tttatcgact attgaaacag ccaacccgct ggcaaagaca attaaattta
    11701 ctaaaatatg cctattacta tctgacaaat cagctctaaa aaacgcattt tttgatattt
    11761 attaaacgtt ttgaataaaa taaaaccaaa caatacattt ttttacattt tttttaaaaa
    11821 gtgctagaca agggaaagtg aaatctataa tatacgcctc cgttgcgacg cattaagttg
    11881 aattgatgta aatcgaagcg ttcgtagctc agttggatag agcgttggcc tccggagcca
    11941 aaggtcgcaa gttcgaatct tgtcgagcgc gccagatgtc aatgcggcac tatcaacaca
    12001 atggtggcta tagctcagtt ggtagagccc tggattgtga ttccagttgt cgtgggttcg
    12061 aatcccatta gccaccccat tcaatactct tgtgagtatc agacggcgag tagcgcagct
    12121 tggtagcgca actggtttgg gaccagtggg tcgtaggttc aaatcctatc tcgccgacca
    12181 attta
//
LOCUS       DANMBQ010000073        12183 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.073, whole genome shotgun sequence.
ACCESSION   DANMBQ010000073 DANMBQ010000000
VERSION     DANMBQ010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12183
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.073"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(152..949)
                     /locus_tag="PXE92_001657"
     CDS             complement(152..949)
                     /locus_tag="PXE92_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HDL5760883.1"
                     /translation="MENFEKQFISLFQRIVPHYRRSEVFYDFITLSALDMYLVTYRDQ
                     AEPNLRERFAHAKARYSDSEFTQLAELLAVTVNALTQKRYDFLGSVFMNLNLGDGYRG
                     QYFTPSHIADLMAKVTLQDCDRIISQQGFVTLSEPTCGSGVMVIGCVNAMFDAKYNPQ
                     QQLWVHCQDVDFTAAMMCYIQLSLLHIPACIVVGDTLLNETKIQMYTLAHLMGNWSHK
                     LEQQIAPLVNSTTEKGCGNNIEKSVIVEDLSQISILDEIDDNELIFY"
     gene            complement(1022..1768)
                     /locus_tag="PXE92_001658"
     CDS             complement(1022..1768)
                     /locus_tag="PXE92_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760884.1"
                     /translation="MPNWCENKLQIFCDCIQAKQIIPKLFRKTESDKWCLDFELLVPM
                     PESICIESSSLGDRAMEFLKISPNRRLTRPLLKKYIYGSEIDRIYAKAKHHRWDVGHF
                     INWLIKRPEQQSILWLNLALGQQYLSNLAQHGYKDWYDWSNEQWGCKWNVCSDSCQVS
                     FNDNGSINCLFDTPWGPPDGWFQALCTAFPDIEFILSFFEPGMWFAGKYIANLDGSYC
                     NIYIDDRGIRSFAEEVFNEEFEDEFEEKLE"
     gene            complement(1908..2882)
                     /locus_tag="PXE92_001659"
     CDS             complement(1908..2882)
                     /locus_tag="PXE92_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL5760885.1"
                     /translation="MNTQTKFDLYQHITDRIVAALEQGTAPWLKPWSHPECNMALPRN
                     AVSNRLYSGINTLLLWIATAEYGYKQSKWITAKKANELGGYIRKGEKATVVMNYRPDK
                     REKLDEEGNIVYDEEGNPEIEQHFFIKKHNLFNLDQCENLPEELYDPISEPKQPTSDP
                     NQYEIFADIRQIIKGMDLHVEMKPSNRAYYQPSADLVVMPEIKQFENAQAFHSVLLHE
                     MTHATGAAKRLDREGITSGKAKFGNKVYAFEELVAEMGGAFLCAYLGFDTVPQNAAYI
                     ESWIRVIKEDKRAIVRASGKAREACQYMLDALNISQLADKNEVFEEAA"
     gene            complement(3127..3534)
                     /locus_tag="PXE92_001660"
     CDS             complement(3127..3534)
                     /locus_tag="PXE92_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5760886.1"
                     /translation="MKHDLDLLKYIWDNRNLNNKAYQYLFHICIEPMRKGDWNRYTIW
                     LNNNGNLVNISAVVYEIVSSQQLKDDIKLWQDMQFHCRPVKVETTGFISFLLHQFFNG
                     ITHVLLEQGMITETEAAEKSYHFIAANSFQRLL"
     gene            complement(3650..4492)
                     /locus_tag="PXE92_001661"
     CDS             complement(3650..4492)
                     /locus_tag="PXE92_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760887.1"
                     /translation="MSGSVLNTYFKHALVKAGFPNCLNIEYSLSHCQGDGVAFYGRLN
                     TETLINLFNKLNPQKRTQKMFSNLLNHIESWEPHYGVDFEIIRNSFGYRYSHCNTMEL
                     SVRTADDLAFFYDRDARKEWYFPTSKVEKYKALWDGFIQDLGQYIKDTSCALESNGYQ
                     IIEASPYQTETIFKFNTENYLIELKRKSSEFYSESVDWLCGDVCDFEAMIEEILQGKL
                     CYADFVATVTDKESGIQLGSDEITGVSYSPTDHSLSGYRQELISNAIASARSNAARFA
                     YLHA"
     gene            complement(4570..4965)
                     /locus_tag="PXE92_001662"
     CDS             complement(4570..4965)
                     /locus_tag="PXE92_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760888.1"
                     /translation="MARKKIQYTETDLHLYSVLWNLRHAHDLFSVKLERETKFGKAFS
                     VFSRFDVCPSYGEVDITYLVVKAGIRKTLRGFAYVGGNGFSHSRHLMSTFMYLVREIL
                     VEHNWISETELYDQPISVYKFRAINFDKW"
     gene            complement(5064..5309)
                     /locus_tag="PXE92_001663"
     CDS             complement(5064..5309)
                     /locus_tag="PXE92_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5760889.1"
                     /translation="MLVHIRLSCIGDVLPTKLNEWTSEHQALQQEISHRALEAWQNRD
                     KDIKSVRFMQQMPSRQGLNFRFLSVSEQNGKLIVSRA"
     gene            complement(5381..5734)
                     /locus_tag="PXE92_001664"
     CDS             complement(5381..5734)
                     /locus_tag="PXE92_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760890.1"
                     /translation="MSQQTAGWDVIPFESSKTVKPSLFWKLGNKLGNIFVSAKHKAKS
                     KYVEVTKGINQRIAEEDEMRALELQMCLDEQAAEYEQEISRIKRKMFFWTLLAAIIAF
                     VCGMAAVFGTQLSLI"
     gene            6108..6551
                     /locus_tag="PXE92_001665"
     CDS             6108..6551
                     /locus_tag="PXE92_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03757 family integrating conjugative element
                     protein"
                     /protein_id="HDL5760891.1"
                     /translation="MKVSRFLGYCSIVTGVFSPLAQAQPNIIVYTTKMYPIQNSQLAS
                     QIYYLDQVENFEESISRNLSKSPEIAEQEMRAFFNSADWKAQEQQLKDAYQGVISGWQ
                     NGIKKVPAVFFDNPQSSPSVIYGTTDVQKALDEWHKWVKQQGESK"
     gene            6548..7489
                     /locus_tag="PXE92_001666"
     CDS             6548..7489
                     /locus_tag="PXE92_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03756 family integrating conjugative element
                     protein"
                     /protein_id="HDL5760892.1"
                     /translation="MKKTFLTILISASLAVPTTLYPQPARASLNTASIAASSASTSCL
                     EYKVVGTCFWLFCTYFGCKVRTSTKIKHYLPEMVVSSYNHDGQTPWTELQALNPGVKG
                     GEYRSPQRQYSQLTFKNADAFGHPQGAIGQLLGNTGYYCKTQTTPFMPYFLSGLDFFA
                     WRENMPEMFYPEALTPGMREVGRVGDSWGNIYPRSGWVTQAHDYKASATIVQRVADIV
                     SRTAQPHIYFPAAKTGGAGEWPPGPVEEGQARTHKWQILYPQMSNTCSVFPNGGQTDT
                     YSSQISNQGDYAWALWRPYSCCKRRGQTFLYSIDWSH"
     gene            7507..9519
                     /locus_tag="PXE92_001667"
     CDS             7507..9519
                     /locus_tag="PXE92_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL5760893.1"
                     /translation="MKSHFNFKKSHLRITTALLSSVSGLSYADSITDKLEFSKSDSII
                     SDRVFYQIGGGMGYMAPPSRGNTKVVDLGIGWKANLTCGNFDIKTTIKNDLNGLKDGF
                     KDLMGNVIDSAKGAVASMPAMVLQRANPQLYDLLTNGMYQGKLDFNRLKTSCEEMSKV
                     LADHTLGGKWGQAADLESYKQITSSQPDAKQAQKDLEDKKGKDGRVWIGGQKKGGENQ
                     EAINVVGDVVKAGFNLLNKRNALDTSTISGSSCDGNLCQTWDNPQTAADFLTKIIGEQ
                     SISTCKEDCGTKTSSKAGVGLSPEIEEEHVRTIVKLENVLNMDVPKAELLADLSSTTV
                     PVTRGLIESLRDDPDVEVLSQRLSAEIATSKIMEKMLLARRAVLAGMREPNVAQNADA
                     QVELERVLNIIDREISQVKLEMDMQKMITGNTASVILQSKSEREALAGAHSLSQDSLD
                     KRVQGLENGNVALTDLEAGSNINLSRRNIALSIPNIPNVAALIPNLPNRGGSGVGGNF
                     PSLAQISGSTMDQATGLLRNFEGFISKAQWDVNAHRVGYGSDTITRADGTIVKVTKDT
                     VITKEDAERDLARRTAIFANNVRKELGDSNWNALPPNAQAVLVSYAYNYGSLAKTKSV
                     LDAARRSAQSGDMNALATAIRNRQVDNNGINARRRNQEADYILGKN"
     gene            9540..9968
                     /locus_tag="PXE92_001668"
     CDS             9540..9968
                     /locus_tag="PXE92_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760894.1"
                     /translation="MRKLLGITVLTLCTTSAFATDKNVVFSCTSTEGKPLTVKRVGND
                     YEYSYDKTIFKNPIKKAVTNDGSIIARGSGFTTYALELKNDGLKYVVGFVQPNGNSKE
                     FIEPGATISRDNDQPSIGSVDCDPYKKIYYKFDVHLMNTL"
     gene            10184..10654
                     /locus_tag="PXE92_001669"
     CDS             10184..10654
                     /locus_tag="PXE92_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760895.1"
                     /translation="MDITTQNIELRYLSEQFYLDVAPHLKEILLKETRPYCVLLVRVK
                     NLDFALPLRSNLPEREGVGIKTIPNPQEYGKFKGIDFSKAILLTDKSYLKTDTVQLKN
                     KSELLNIQGNERRIVREFKKYVSEYITAHKNGYKLDHKFEYTTLINYHTELKIS"
     gene            10675..11016
                     /locus_tag="PXE92_001670"
     CDS             10675..11016
                     /locus_tag="PXE92_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760896.1"
                     /translation="MKFIDFGKQLANPVKFIKQNTAFLPKPIQQVVVFAVIFAGLPLF
                     ILGFFILRIWAYKHISLYSEYKDMANSEISSKDTDLKSLFSDDEEQEDDEYQYGYDGP
                     GIYLGNYRVDE"
     gene            complement(11062..>12183)
                     /locus_tag="PXE92_001671"
     CDS             complement(11062..>12183)
                     /locus_tag="PXE92_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
                     /protein_id="HDL5760897.1"
                     /translation="QMNSELGDQQARVPIWWGLFHQINKGVTHALTASIPCKPDLRQV
                     RFEVQHEKINNPALLTEVRLFVQQCYVPARQKIQNSQLSLSPAQVRETSWLGGRILIA
                     NSELYPRYRAQQPHSLFPYNASRDNGLPNNGEGGFPNCAEWWDTANNGLKDRLLDDVK
                     QNFSAKVIDFFSSKENSDESILRTVLRAENMDISRGKVYPGYGGNLDRSFTNEVTKTA
                     SMFGLSLGSIGAFPAFDSMRQALPMVHSFALMALIILTPLIMVMSGYSLKTLVTLTFV
                     NFALVTLTFWWELARWLDSWLLSVLYDSGTHSRINPYFLENTQDDIIVNFVMGSMFLV
                     LPAIWLGSMSWVGVKMGEFASHLTTGSRDSKTAGSKIGK"
BASE COUNT         3870 a         2368 c         2310 g         3635 t
ORIGIN      
        1 taaatgctat tgacacaatt cacagagtta aattaaggta gtaaatgctg tcggcaatat
       61 cggttggtat caatagtcaa atatttattg aaaattcagt tgctgatata aaataattta
      121 gccaccttat ttctaaggcg gctattattt gttagtaaaa tattagctca ttatcatcaa
      181 tttcatctaa aattgagatt tgagataaat cttccactat cactgatttt tctatattgt
      241 taccacagcc tttctcagta gtgctattta caagtggtgc aatttgttgc tccagtttat
      301 gagaccaatt tcccatcaaa tgagccagcg tatacatttg aatttttgtt tcattcaata
      361 gcgtatcacc aactacaata caagcaggaa tatgtaataa cgatagctgg atataacaca
      421 tcatggcagc tgtaaaatca acatcttgac aatgaaccca aagttgttgt tggggattgt
      481 atttcgcatc aaacatcgca ttaacacaac caatcaccat tacacccgaa ccacaagttg
      541 gttctgataa agtaacaaat ccctgttgtg agatgattct atcacagtcc tgtagtgtaa
      601 ctttcgccat tagatctgcg atgtgagatg gtgtaaagta ttgccctcta taaccatcac
      661 caagattgag attcataaat actgagccta agaaatcata gcgtttttgt gttaaagcat
      721 tcaccgtaac agctaacaat tctgctaatt gagtaaactc agaatctgaa tatcgtgcct
      781 tagcatgagc aaagcgttct cgcaaattag gttctgcttg atctcgatac gttactaggt
      841 acatatcaag tgcagagagt gtaataaaat cataaaacac ttctgaacgt cgataatgtg
      901 gtacgatacg ttgaaataag ctgataaatt gcttttcaaa gttttccatt agactactcc
      961 ttaaagttta cggagtaatc cccctaggga attaccccta gggtggaaaa attaattaag
     1021 gctattcaag tttctcttcg aactcatctt caaattcttc attaaagact tcctcagcaa
     1081 aactgcgaat acccctatca tctatgtaaa tattgcagta tgagccatca agatttgcga
     1141 tatatttgcc cgcaaaccac attcccggct caaaaaatga aagtataaac tcaatgtcag
     1201 gaaaggcagt acaaagtgct tggaaccaac catcaggtgg tccccatggc gtatcaaata
     1261 ggcaattaat agatccatta tcattaaagc taacttgaca gctatctgaa catacattcc
     1321 atttacagcc ccactgttca tttgaccagt cataccaatc tttgtaacca tgttgagcta
     1381 ggttagacag atattgctgg cctaatgcga ggtttagcca taatatactt tgttgttcag
     1441 gacgttttat caaccagttg ataaaatgac ctacatccca gcgatgatgc tttgccttag
     1501 catatatccg atcaatttcg gacccataga tatacttttt gagtagaggg cgtgttaaac
     1561 gtctatttgg tgaaattttt agaaattcca ttgctctatc accaagacta cttgattcaa
     1621 tgcagattga ttctggcatt ggaacgagta attcaaagtc taaacaccat ttatcacttt
     1681 cagtttttct gaaaagctta ggaataattt gtttagcttg gatacaatcg caaaaaattt
     1741 gtagtttatt ttcacaccag tttggcataa tgtactccta aataaagtag gggtacactt
     1801 gccttgaggc aatgtacccc aagggttaaa agataatcga tacataattc ctaaaggatt
     1861 atgtattact atgaaagatt gtgttgaaag tacctttcag caaagagtta agctgcttct
     1921 tcaaagacct cgtttttatc agccagctgt gagatattta atgcatctaa catatattga
     1981 caagcttcac gagctttacc agaagcccgg acaatagccc gtttatcttc ttttataact
     2041 cttatccaac tttcaatata tgccgcattt tgaggtaccg tatcaaatcc aaggtaggca
     2101 cacaaaaatg ctccccccat ttcggcaacc aactcctcaa aagcatagac tttgtttcca
     2161 aattttgctt ttccggaggt aataccctca cgatcgagcc ttttagcagc accagttgca
     2221 tgagtcattt cgtgcaataa cacactatga aacgcttgag cattttcaaa ctgttttatt
     2281 tccggcatta caactaaatc tgcactgggt tgataatatg cccgattact cggtttcatt
     2341 tccacgtgta aatccattcc tttgataatc tgccgaatat cagcaaaaat ctcgtattgg
     2401 tttggatccg atgtaggctg tttaggttct gatataggat cgtacagttc ctcgggtaaa
     2461 ttttcacact ggtctagatt gaacagattg tgcttcttaa tgaaaaagtg ttgttcaatt
     2521 tctggattac cttcctcgtc atacacaata tttccctcct catcaagttt ttctctctta
     2581 tcaggacggt agttcattac aacagtagct ttttcacctt tacggatata tccgccgagc
     2641 tcgttagctt tttttgctgt aatccactta ctctgtttgt aaccgtattc tgcggtagca
     2701 atccagagta atagtgtgtt gataccagaa tacaatcggt tagagaccgc attacgaggt
     2761 aatgccatat tacattctgg atgactccac ggttttaacc atggtgcagt cccctgttcc
     2821 agtgctgcaa caattcggtc tgtgatatgt tggtataaat caaatttagt ttgagtgttc
     2881 attagtgttt ctccaaagtt caggtagaaa atggggaaac actattaccc ttatcgggca
     2941 ctagtttccc cgatgggtgg tttaaaatct caacagagat agtttttcta ggttcatcaa
     3001 aaccagtaga actgcctata atgcagtaac tacagataat ttgttaatca gtattgattc
     3061 aagttaaaca taatcctcat atcgaaaatt actttggtaa tacaaagtta cattatttca
     3121 gatccattaa agtaaacgtt gaaagctatt agcagcaata aagtgataac ttttttccgc
     3181 agcttctgtt tccgtaatca ttccctgctc cagcaaaaca tgggtgattc cattgaaaaa
     3241 ctgatgtaat agaaatgaaa taaaacctgt tgtttcaact tttactgggc gacaatgaaa
     3301 ctgcatatcc tgccaaagtt taatatcatc ttttaactgt tgagagctca caatttcata
     3361 tacaacagca gaaatattaa ctaaattacc gttgttattc agccaaattg tataacgatt
     3421 ccaatctcct tttctcattg gctctataca aatgtgaaat aggtattggt aggctttatt
     3481 atttaaattg cggttatccc agatgtattt gagtaaatct aaatcgtgtt tcataatgtt
     3541 tctccaaaag aaaaaagtgg agaaacatct tacctatagg gaaaatattt ccccacaggg
     3601 taaaaaacaa tctcgataag cggtcaaatt gaaataaaaa acctacaaat caggcatgca
     3661 agtaggcaaa acgtgcggca ttactacgag cagaagctat agcattacta ataagctctt
     3721 gtcgataacc actcaatgaa tggtctgtcg gcgaatagct tacgcctgta atttcatcgc
     3781 tacctagttg aatgccactt tccttatcag taacggttgc tacaaaatca gcatagcaaa
     3841 gtttcccttg taggatttcc tctatcattg cctcaaaatc gcagacatca ccacatagcc
     3901 aatcaacaga ctctgaataa aattcagagg atttacgttt aagttctatc agatagtttt
     3961 ccgtgttaaa tttgaaaata gtttccgtct gatacggtga ggcctcaata atctgatagc
     4021 cattcgattc taaggcacag gaagtatctt taatatactg acctaaatct tgaataaatc
     4081 catcccacag ggctttgtat ttttccactt ttgatgtagg gaaataccac tcttttcggg
     4141 catcacgatc atagaaaaat gccaaatcat ctgctgttct aacagaaagc tccatcgtat
     4201 tacaatgcga atagcggtac ccaaaactat ttcgtatgat ttcaaaatcc acgccatagt
     4261 gaggctccca agattcaatg tgattcagca gattagaaaa cattttttgt gtgcgtttct
     4321 gaggatttag cttgttgaaa agattaatta acgtctccgt attaagccta ccgtagaatg
     4381 ctacgccatc gccttgacaa tgagaaagtg aatactcaat gtttaagcaa ttaggaaaac
     4441 cagctttaac aagagcgtgt ttaaaataag tgtttaagac tgagccagac attgcgcttc
     4501 tcctaaaatt agagggaaac acattaccct tttccggaaa ttgtgtttcc cgaaagggtg
     4561 aaagattgat taccacttat cgaagttaat cgctctgaat ttataaacgg atataggttg
     4621 atcatagagt tctgtttccg aaatccaatt gtgttcaacc aagatttctc tgacaagata
     4681 cataaatgta ctcatcaaat gacgactatg actaaacccg tttccaccaa cataagcaaa
     4741 ccctctcagg gttttgcgaa ttcctgcttt aacaacaagg taagtaatat caacctcgcc
     4801 ataagacggg cagacatcaa agcgagaaaa aacagaaaat gctttgccaa acttggtctc
     4861 acgctctaat ttcacactga atagatcatg tgcatggcgt aaattccaaa gtacactgta
     4921 taagtgcaaa tctgtttcgg tatattgaat ttttttacga gccataatgt ttctcctaaa
     4981 aaataaaagg gaaacattac ttccctctgg ggataatgcc tccccttgtg aggtataaga
     5041 ataggatgtg aatatgaagt tgcctatgct cgactaacaa ttagcttgcc gttctgctcg
     5101 gacacactca gaaagcgaaa attaagtcct tgccgagacg gcatttgttg cataaatcgc
     5161 acgcttttga tgtccttatc tcgattttgc cacgcttcta aagctctatg actaatttct
     5221 tgctgtaagg cttgatgctc tgatgtccat tcattaagtt tagttggtaa aacatctcca
     5281 atacaggaaa gtctaatatg aactaacata catttctcca gaataagggg aaatgcattc
     5341 cccttaaggg aaacaacatt tccccgatgg gtgagttaaa ttagattaaa gagagctgag
     5401 taccaaaaac ggcagccata ccacatacaa aggcaataat ggcagccaac aaagtccaga
     5461 aaaacatctt acgcttaatg cgggaaattt cctgttcata ttcggctgct tgttcgtcta
     5521 agcacatttg cagttctaag gctcgcattt catcttcttc agcaatccgt tgattgatgc
     5581 ctttggtgac ttcaacatac ttgcttttgg ctttatgttt cgctgaaaca aaaatattac
     5641 ctagcttgtt gccaagtttc caaaaaagag aaggttttac ggttttggat gattcaaacg
     5701 ggataacatc ccatcctgcg gtttgttgac tcatagcgag ttctcctaaa agttaagtga
     5761 ataaaattcc tcaggagatc gcaattccaa gggaattgaa atatccctcg gaaggtaggt
     5821 gtgtaggtag cattcctgca aatttgcaga gttccctttc agaatgctgg gagacatttt
     5881 gggtaaataa ctcaactacc tctaaggata gccgccgctt ttcaagagtt atgcgacttt
     5941 taagggctgt atctacagcg tcttaatgct taatatcata cgaattcctc caataaaatc
     6001 aaccgttttt ttgttcaaaa aatatctctt ttttgaaaag agtttttcct atcctcaaca
     6061 taaaaatctc gctaattttc tgcttatttg ttcgggagga gagcgtgatg aaagtaagta
     6121 gatttctggg atattgcagt atagtaacag gtgtgttttc gccccttgca caagcacaac
     6181 ccaatatcat cgtctatacc acaaagatgt accctattca aaattcacaa cttgcttccc
     6241 agatttatta tcttgaccaa gtagagaatt ttgaagagtc aatcagtcga aacctcagta
     6301 aatcaccaga gattgccgaa caagaaatgc gtgcattctt taattcagca gattggaaag
     6361 cccaagagca acaattaaaa gacgcttatc aaggcgtgat cagtggatgg caaaatggca
     6421 ttaagaaagt acctgcggtg ttttttgata atccacaatc ttctccgagt gtgatttatg
     6481 gtacgactga cgtacagaaa gcattagatg aatggcataa atgggttaaa caacaaggtg
     6541 aatcaaaatg aaaaaaacgt ttcttacgat actgatctct gccagtttag ctgtcccaac
     6601 aaccttatat cctcaaccag ccagagcctc attgaatacc gcttccattg ctgcatcaag
     6661 tgcctcaaca agctgtttgg aatataaagt tgttggaacc tgtttttggt tattttgtac
     6721 ctactttgga tgtaaggttc gcacatcaac caaaattaag cattatttac ctgaaatggt
     6781 tgtttcatct tataaccacg atgggcaaac gccatggaca gaattacaag ctctcaatcc
     6841 tggtgtaaaa ggtggagaat accgttctcc acaacgccaa tactctcaac tcactttcaa
     6901 aaatgcggat gcgtttggac acccacaagg agctatcggt caattattag gaaatacggg
     6961 gtactattgt aaaactcaaa ctacgccatt tatgccttac tttttgagtg ggctggattt
     7021 ttttgcctgg cgtgaaaata tgccggaaat gttttacccg gaagctctga ctccgggaat
     7081 gcgggaagtt ggccgtgtag gcgatagctg gggaaatatt tacccacgtt ccggttgggt
     7141 aacccaagca cacgattata aagcctctgc gaccattgtg cagagagtgg cagacattgt
     7201 gagccgaaca gctcagccac acatttattt cccagcagcc aaaacaggtg gtgcaggaga
     7261 atggcctcca ggaccggtcg aagagggaca agcaagaaca cataaatggc aaatacttta
     7321 ccctcaaatg tcaaatacct gctctgtttt tcctaatgga gggcaaacag atacctattc
     7381 ttctcaaatt tcaaatcaag gtgattatgc ttgggcatta tggcgacctt atagttgttg
     7441 caaacgccgt gggcaaacat tcctttacag tattgattgg tcacactaat aacattggga
     7501 gcaataatga aatctcactt taacttcaaa aaatcccact tacggatcac gacagcatta
     7561 ttatcaagtg tatcaggact atcttatgcc gattcgatta cggataaact ggaatttagt
     7621 aagtcggatt cgattatttc agaccgtgtt ttttaccaaa tcggcggtgg aatgggttat
     7681 atggctccac ctagtcgtgg taataccaaa gttgttgatt taggaattgg ttggaaagcg
     7741 aatttaacct gtggtaattt tgatattaaa acgaccatta aaaatgattt aaacggtctc
     7801 aaagacggct ttaaagattt aatggggaat gtcattgatt cagcgaaagg tgcggttgca
     7861 agtatgcctg caatggtatt gcaacgggcc aaccctcaac tctacgattt actcacaaat
     7921 ggtatgtacc aaggtaagct ggatttcaac cgtcttaaaa ccagttgtga agaaatgtcc
     7981 aaagttttag cagatcatac actgggagga aaatgggggc aagcagctga tttagaaagc
     8041 tataagcaaa ttacctcctc tcaacctgat gcaaaacaag ctcaaaaaga cctggaagat
     8101 aaaaaaggga aagatgggcg agtttggata ggaggtcaga aaaaaggtgg ggaaaaccaa
     8161 gaagctatca atgttgttgg cgatgttgtc aaagctgggt ttaatttact gaacaaacgt
     8221 aatgccttag ataccagtac aatttcaggt tcaagctgtg atgggaatct ttgccaaact
     8281 tgggataatc cacaaacagc agccgatttt ttaactaaga ttattggtga acaatctatt
     8341 tcgacttgta aagaggattg tggcactaaa accagctcaa aagccggtgt aggcttgagt
     8401 ccggaaattg aggaagaaca tgttcgtact attgtcaaat tagagaatgt actgaatatg
     8461 gatgtgccta aggctgaatt gttagctgat ttgagttcaa ctactgtacc agtaacaaga
     8521 gggcttattg agagtcttcg agatgatcct gatgttgagg tattaagcca acgcttatct
     8581 gcagaaattg cgactagtaa gataatggaa aaaatgctcc tggctcggcg agcagtctta
     8641 gctggtatgc gtgagccaaa tgtcgctcaa aatgcggatg cacaagtaga actggaaaga
     8701 gtactcaata ttattgaccg tgaaatttcc caagtaaaac tagaaatgga tatgcaaaaa
     8761 atgatcaccg gcaatacggc ttcggtgatt ttgcaaagca aatccgaacg agaagctctt
     8821 gctggtgctc atagtttatc tcaagacagt ctggataaac gtgttcaagg acttgaaaac
     8881 ggtaatgttg cattaactga tttagaggca ggctctaata ttaacctctc tcgtagaaat
     8941 attgcattga gtatcccgaa tattccgaat gtagctgctc tcatacctaa tctgccaaat
     9001 cgaggtggtt caggtgtagg tggaaatttc ccatcactcg cacaaatcag cggttcaacg
     9061 atggatcaag caacaggatt actacgtaat tttgaaggct ttatctctaa ggctcaatgg
     9121 gatgtaaatg ctcatcgagt aggatatggt tccgatacaa ttacccgagc tgatggtacg
     9181 atcgtaaaag taaccaaaga tacggtcatt accaaagaag atgcagagcg tgatttggcc
     9241 cgccgaacag ctatcttcgc aaataatgtg agaaaagagc ttggagattc aaattggaat
     9301 gcgttaccgc cgaacgctca agctgtttta gtgtcttatg catataatta tggttcactt
     9361 gctaaaacaa aaagcgtact tgatgcagcc agaagatcag ctcaaagtgg tgatatgaat
     9421 gctttagcta ctgcaatcag aaatcgccaa gttgataata atggcatcaa tgcacgtcgc
     9481 cggaatcagg aagctgacta tattcttggt aaaaattaac ctcataagga gttacattta
     9541 tgcgtaaatt attaggtatt actgtactta cactttgtac aacttcagca tttgcaacgg
     9601 ataaaaatgt ggtattttct tgtaccagca cagaaggtaa acctctcaca gttaaacggg
     9661 taggaaatga ttacgagtat tcgtatgata aaactatctt caaaaaccca atcaaaaaag
     9721 cggtgaccaa cgatggctca attatcgcta gaggatcagg ttttaccacg tatgcattag
     9781 aactgaaaaa tgatggtttg aagtatgtag ttgggtttgt tcaaccaaat ggtaactcaa
     9841 aagagtttat tgagcctgga gcaacgatta gccgtgataa tgatcaacca agcattggct
     9901 ctgtagattg tgatccttac aaaaaaatct attataagtt tgatgttcat ttaatgaata
     9961 ccttgtaatg cgataattca ataatatggg ggaatggctt gatttttcat cccccatact
    10021 ctattatata gatgtggtgc tagagccagc ccacgttaaa aaatacaaag ctcggtagat
    10081 gaactattgt ggtgccagag ccggcccacg ttaaaaaata caaagctcgg tagatgaggc
    10141 cccttaagtc gtaagattta aggggttttg cttaggatat aaaatggata ttacaacaca
    10201 aaatattgaa cttagatact tatctgagca gttttacctt gatgtcgctc cacatctgaa
    10261 agaaattttg cttaaagaga ctcgcccata ctgtgttcta ttagttagag ttaaaaattt
    10321 agattttgcc ctaccattgc gttctaattt acctgaaaga gaaggagttg gaattaaaac
    10381 gatacctaat cctcaggaat acggcaaatt taaaggaatt gatttctcaa aagccattct
    10441 actgacagat aaaagctatt taaaaacaga taccgttcag ctcaaaaaca aatcagaatt
    10501 gttgaatatc caaggtaatg agcgtagaat tgttcgtgaa tttaagaaat atgtgagtga
    10561 atatatcact gcacataaaa acggttataa attagatcat aaatttgaat atacaacttt
    10621 aattaattat catactgagc tgaaaatcag ctaattagaa taattggagg agctatgaaa
    10681 tttatcgatt tcggaaagca gctcgctaac ccagttaaat ttatcaaaca gaatactgca
    10741 tttttaccta agcctattca acaagtggtc gtttttgcgg taatttttgc aggattgcct
    10801 ctatttatct tgggtttctt tattctcaga atatgggctt ataagcatat ttctttgtat
    10861 agtgaatata aagatatggc taattcagaa atatcgtcta aagatacaga tttaaaatca
    10921 cttttttctg atgatgaaga acaagaagat gatgaatatc aatatgggta tgatggacca
    10981 ggtatatatc taggtaatta ccgtgttgat gagtaaaagt aaatagagtg gtatatacca
    11041 ctctattatt cagttgttag attatttccc tatcttggaa cccgctgttt tagagtctct
    11101 agaaccagta gttaaatgac ttgcaaactc tcccattttt actcctaccc aagacatact
    11161 gcctagccaa atcgctggta agaccaagaa catagaaccc atcacaaaat tcacaataat
    11221 atcgtcttgt gtattttcaa ggaaataagg gtttattctg ctatgtgtgc ctgaatcata
    11281 gaggaccgac agcaaccaag agtcaagcca tctagctagt tcccaccaaa atgtgagtgt
    11341 aactaatgcg aaattcacaa aagttagcgt aaccaatgtt tttaacgaat aaccactcat
    11401 aaccataatt aaaggcgtga gaataatcaa tgccattaat gcaaatgaat gcaccatcgg
    11461 taatgcttgc cgcatcgaat caaaagcagg gaatgctccg atactgccta atgacagacc
    11521 aaacattgaa gctgttttag tcacttcatt tgtaaatgat ctgtctaaat ttcccccata
    11581 cccgggataa actttccctc tcgaaatatc catattctca gctcgtaata cggtacgaag
    11641 tatggattca tcggaatttt ctttactgct gaaaaaatca atcacttttg cagagaagtt
    11701 ctgttttaca tcatctaata aacgatcttt taaaccatta ttcgccgtat cccaccactc
    11761 tgcacaattt ggaaaaccac cctctccatt attcggcaat ccattatccc gagaagcatt
    11821 atagggaaat agactatgag gttgttgggc tcgataacgg ggataaagct cgctatttgc
    11881 aatcaaaata cggccaccta accagctagt ctcacgaacc tgtgctgggc tcaatgaaag
    11941 ttggctattt tgaattttct gacgtgccgg tacatagcat tgttgtacaa ataagcgaac
    12001 ctctgtcaat aatgctggat tattgatttt ctcgtgttga acttcaaaac gaacttgacg
    12061 taaatccggt ttgcagggaa ttgaagctgt taaggcgtgt gttacccctt tgttgatttg
    12121 atgaaataat ccccaccaga tagggactct cgcttgttga tcacccaatt cagagttcat
    12181 ttg
//
LOCUS       DANMBQ010000074        12112 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.074, whole genome shotgun sequence.
ACCESSION   DANMBQ010000074 DANMBQ010000000
VERSION     DANMBQ010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12112
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.074"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            78..1076
                     /gene="yiaK"
                     /locus_tag="PXE92_001672"
     CDS             78..1076
                     /gene="yiaK"
                     /locus_tag="PXE92_001672"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HDL5760898.1"
                     /translation="MRVSYEELKAQFKRVLLARNVREEIAEECATVFADTTQAGAYSH
                     GVNRFPRFIQQLENGDIVPEAVPTKVLSLGAIEQWDAHQAIGNLTAKKMMDRAMELAS
                     ENGIGVVALRNANHWMRGGSYGWQAAEKGYIGICWTNALAVMPPWGAKECRIGTNPLI
                     IAVPTNPITMVDMSCSMYSYGMLEVHRLAGRQTFVDAGFDDDGNPTRDPATVEKNLRL
                     MPMGFWKGSGLSIVLDMIATLLSNGESTAAVTEDKDDEYCVSQVYIAIEVDRLIDGKT
                     KDEKLNRIMEYVKTAERADPDVAVRLPGHEFTQILADNKANGIPVDDTVWAKLQAL"
     gene            1201..1566
                     /locus_tag="PXE92_001673"
     CDS             1201..1566
                     /locus_tag="PXE92_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL5760899.1"
                     /translation="MFFGHISQVKANRYPPAIQIALNYLKNTDFDAMEAGVYELKGRQ
                     IYVQVLDLNTKSKHEFQPEVHRNYLDVQYLHRGKEIMAAAVDTGTNPIAMEYNPERDI
                     QYYQSVANENEFRCVEGNF"
     gene            1630..2109
                     /locus_tag="PXE92_001674"
     CDS             1630..2109
                     /locus_tag="PXE92_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL5760900.1"
                     /translation="MKALAQLVGKLLEILVVVILSAMSILVFVNVVLRYGFNSSISVT
                     EEVSRYMFVWLAFLGAVLAFSENQHVKVTMLTDKLSPTARNILSVVTDLAMLFCCYLI
                     VDGSWIQFNLNLNNFAPISGLPQGITFLASTVAGVLIGLLIIARIVATVGVIAKGEK"
     gene            2110..3387
                     /locus_tag="PXE92_001675"
     CDS             2110..3387
                     /locus_tag="PXE92_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HDL5760901.1"
                     /translation="MTVVIFLSVLLGSILLGIPVAFALLVCGVALMLHLDLFDAQILA
                     QQIVSGADSFSLMAIPFFILAGEIMNEGGLSKRIIDLPMKLVGHKRGGLGFVAILAAM
                     IMASLSGSAVADTAAVVAMLLPMMKTTGYPIDRSAGLIGTAGIIAPIIPPSIPFIVFG
                     VASGVSITKLFLAGIFPGIMMGICLAALWWWQAKRLDLMTFSKATKEELCISFKNSIW
                     ALLLPVIIIGGFRSGMFTPTEAGAVATFYALIVSLFVYREMKFKDLYKVVLAAAKTTA
                     VVMFLVAAANVTGWLITVAELPMMLTELLEPLIESPTTLLLVIMLAVFIIGMVMDLTP
                     TVLILTPVLMPLVEEAGIDPVYFGVLFILNTSIGLITPPVGNVLNVITGVSKLPFDQA
                     AKGVMPYLVMMICLLLLFVFFPSLVLVPLSWMQ"
     gene            3490..4476
                     /locus_tag="PXE92_001676"
     CDS             3490..4476
                     /locus_tag="PXE92_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5760902.1"
                     /translation="MKLFNLKTLFALVAGVAVMSGSAMAETSLRFGYEAPRSDTQHIA
                     AKKFDELLAAKTKGEIKLKLFPDSTLGNAQTMISGVRGGTIDIEMSGSPNFTGLEPKL
                     NVIDIPFIFKDREHVYKVLDGEVGQGLLKDLEAQGLKGLAFWDVGFRAFSNSKHPVTK
                     PEDIKGLKVRTNQNPMYIQAFTLLGGNPVPMPLSELYTALETRAVDAQEHPIGIFWSA
                     KLFEVQKHLSLTNHGYTPLIVVMNKAKFDGLAPELQTALVEAAKEAGQFQRDLNVKNE
                     KEIIEKLRKQGIEVIEQVDNAPFKAAIEAEVRKAFVEKHGDELLKKVDALAQ"
     gene            4550..5533
                     /locus_tag="PXE92_001677"
     CDS             4550..5533
                     /locus_tag="PXE92_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5760903.1"
                     /translation="MKLFNLKTLAAFVAGFALFSTAQAETSFRFAYEAPRSDTQHIAA
                     KKFNDLLQEKSQKGLKLSLFPDSTLGNAQTAISGVRGGTIDIAMSSSSNFTGLEPKLN
                     VIDIPFIFKDRDHAYKALDGEIGQGLLTALEAHGLKGLAFWEVGFRAFSNSKHPITKP
                     EDIKGLKIRTNQNPMYIQAFSILGANPVPMPLSKLYTALETKAVDAQEHPIGIFWSAK
                     LYEVQKYFSFTNHGYTPLIVAINKAKFDALPAEQQTALVEAAKEAGKYQRQLNLENEQ
                     KIIDSLKKAGIEFVDNLDTTPFKDAVSAETRKAFIEKNGDGLVKAIDALAK"
     gene            5664..7148
                     /locus_tag="PXE92_001678"
     CDS             5664..7148
                     /locus_tag="PXE92_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5760904.1"
                     /translation="MQHIIKRFGSHTAVNDVSLDIHSGEIVALLGENGAGKSTLIKIL
                     AGIYDRDEGDILFHNQKIQSAHAIEKGNKKPIAFIHQDLGLIEWMTIAENMAFVMGFP
                     RKFGLIDWAKVREQSQKALDFVGIKLSADTRVFDLSRTEKALLAIARAIAVNAEILVL
                     DEPTASLPASDVEHLFTVLNRLRSQGVGMIYVTHRLDEVIAISDRILVMRDGFPVAEG
                     QTKLYDVKGLVKAIVGEESRGRQRVDLPTDTPEILSLQNVVVGDTGPVNFRLHKGEMI
                     ALAGLRGAGQEEIGRLLFGERTLDKGEIQLDKRSYSAKDPQDAIAKGVALVAGDRTRE
                     SVFMSMTTSENLFINPVLSGHSPLKRYSRREEWGESWYKFQLFDIRPKNLFIDASALS
                     GGNQQKIVLARWMHLNTPVLILEDPTAGVDVGARAEIYDLLNKALAEGVAIIVISTDF
                     EEIAHLCNRALVFNRGEIAGELLNEEVTFANLLALASDSQSKKQ"
     gene            7343..8389
                     /locus_tag="PXE92_001679"
     CDS             7343..8389
                     /locus_tag="PXE92_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5760905.1"
                     /translation="MAQTNIKSTALEQPVSIARDGFMAWFSQMSTRYGLLWLCVLLVI
                     IFSLTTESFASMLTLNAILESKSKIALLALAATTTMIVGKIDLNVGFGIVLWHILVIT
                     LQVQYGFSWYMAILIVLVIAALYGLLNGILVALADIDSFVATLGSGTVLYAVALWHSG
                     GRQIVGDLPDEFIALNSTEIFGIPISAFYVLAVAIVMWLVTEHTPTGRCMYAVGGNPT
                     AARLNGINIKKYTIVPFIVSSVITAFTGVLISAQQGVGQASVGMDYLLPALVGAFLGS
                     TTIRPGRINVWGTVVGIAILAIGISGIQQFGGAFWVEPLFNGATLLLSITIAGYAQRK
                     RLLNQKAVQKKSTN"
     gene            8402..9511
                     /locus_tag="PXE92_001680"
     CDS             8402..9511
                     /locus_tag="PXE92_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5760906.1"
                     /translation="MKKAFRTTLTAIATLTAIAFGNNAFANDDPFVQEAKQLVAAATA
                     KQEKWDGPTTGPQLQKEKTVIFIASDMKNGGVLGVIDGMKEAVGVTGWKLDVLDGAGT
                     VNNQLAALNQAIARKPDAIVIGGWNPNVAKIPLQKATKNGIKLAAWHATPEPGAIDKY
                     GIFYNVTSDSDEIARLSAMLAVAESNGKAKAIILTDSLYEIALRKANVMKEVIEKCKE
                     CKVLEFIDTPLADTSSRMPNLTFSLLQKYGDDLEYALAINDLYFDFMAPSLRTAGKDK
                     PFSISAGDGSVTAYQRIRNGDKQFATVPEPLNLHGWQLVDELNRAFANEKPSGYITPA
                     HLVTKENVAFDGGENNLYAPQNGYKGAYKAIWGVK"
     gene            9616..10506
                     /locus_tag="PXE92_001681"
     CDS             9616..10506
                     /locus_tag="PXE92_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HDL5760907.1"
                     /translation="MSNKFIPKISNPRFNELVGNTFELEELFDKAIWAEGPAWSKPQQ
                     ALYFSDVKGCTMYRWTEQDGTQVFRQPSYFSNGNAFDANDNLITCEHGNRGISLTTPS
                     GEYRFLVGQLDGKRLNSPNDVVVKSDGIIWFTDPPYGILSDNEGKQSPSEIIGCYIYC
                     YDPKTDKLNIATFNTMRPNGLAFSSDEKQLFVADMSSVEFDEDGLHHLVVFDVDGNKL
                     KNRRDVAEISPGIPDGFRIKQNGVIFCSCEEGIIAILPDGTELGRFVLGKLTSNCSFG
                     DDEQTLFITCSNSVYRLTIK"
     gene            10578..12047
                     /locus_tag="PXE92_001682"
     CDS             10578..12047
                     /locus_tag="PXE92_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HDL5760908.1"
                     /translation="MDNKMNYTLGIDCGGTFIKAALFDTQGNIQALHRENVSVISEQA
                     GYAERDMSQLWAICAEVVRSTIEKSGVNPADIKAVGISAQGKGAFLLDKQNRPLGRAI
                     LSSDQRSLEIVKQWQAEGIPQQLYPITRQTLWTGHPVSILKWVQQNEPERYAQIGAVL
                     MSHDYLRFCLTGELHCEETNISESNLYNMEKGEYDQQLADLLGMPDVLEKLPPVIEPN
                     KISGYVTENAAKLTGLAVGTPIVGGLFDVVSTARCANLDDETKLNAVLGTWSVVSGIT
                     DHIDASQSLPFVYGRYAEAGKFIVHEASPTSAGNLEWFVNQWKLDYVKINQAVAQLPP
                     AASSVLFVPFLYGSNAGLGMQAGFYGMQAHHTQAHLLQAIYEGVLFSLMSHLNRMFIR
                     FPKADVLRVTGGPVKSKVWMQMLADLTGMRLEIPQMEETGCLGAALMAMQGVGLDISQ
                     VQALNNEMQVFEPNPENYAAYQTKYQRYQKLTEALNTMI"
BASE COUNT         3360 a         2604 c         2917 g         3231 t
ORIGIN      
        1 ttgactttaa tttgtcttaa gagtaactta taaaacgtga ttttactatt tgaaatattg
       61 aggtattcaa gatgactatt cgagtttcct atgaagaatt aaaagctcaa tttaaacgtg
      121 ttctgttggc tcgcaatgtg cgtgaagaga ttgccgaaga gtgtgccact gtgtttgccg
      181 acaccactca agcgggtgct tattcacacg gggtaaaccg tttcccacgc tttattcagc
      241 agttagagaa cggtgatatt gtgccggaag ccgtgccgac taaagtgctt tcactggggg
      301 cgattgagca gtgggacgct caccaagcca tcggtaactt aaccgcaaaa aaaatgatgg
      361 acagagcaat ggagcttgca tctgaaaacg gcatcggcgt agtggcgtta cgtaatgcaa
      421 accactggat gcgtggcggt tcttacggat ggcaggcggc agagaaaggc tatatcggga
      481 tctgctggac gaacgccctt gcggtaatgc cgccttgggg ggcgaaagag tgccgtatcg
      541 ggactaaccc gttaatcatt gcggtgccga ctaacccaat cacgatggtg gatatgtctt
      601 gctcaatgta ctcatacgga atgttggaag tgcatcgcct tgctggtcgt caaacctttg
      661 tcgatgctgg ttttgatgat gacggcaacc caacccgtga tccggcaacg gtcgagaaaa
      721 acctccgtct aatgccgatg ggcttctgga aaggttcggg cttatcgatt gtgttagata
      781 tgatcgccac cttgctctct aacggtgaat ccactgcggc agtcaccgaa gataaagacg
      841 atgaatattg cgtgtcgcaa gtttatatcg ctattgaagt ggatcgctta attgacggca
      901 aaaccaaaga cgaaaaactc aaccgtatta tggaatatgt gaaaaccgca gaacgtgccg
      961 accctgatgt ggcagtacgt ttaccgggcc acgagttcac ccaaattcta gccgataaca
     1021 aagccaacgg cattccggtg gatgacaccg tttgggcgaa attacaggcg ttgtaattgc
     1081 aaattgaccg gtagggtggg cgtaagccca cgcattagac acaatcataa gatgacgtgg
     1141 gcttacgccc accctacaag cggtcatttt tccgcagaat tttacaaaac ggaggtatga
     1201 atgttttttg gtcatatttc acaagttaaa gcgaatcgat acccgccggc gatccaaatt
     1261 gcgttgaact atctgaaaaa taccgatttt gatgcgatgg aagcaggggt ttacgaactc
     1321 aaaggcagac aaatttatgt gcaggtgttg gatttgaaca ccaaatcgaa acacgaattt
     1381 cagccggaag tgcatcgcaa ttacctcgat gtgcagtatc tacaccgagg caaagagata
     1441 atggctgcgg cggtggatac cggcaccaat ccgattgcga tggaatacaa ccctgagcgg
     1501 gatattcaat attatcaatc cgttgccaac gaaaatgaat ttcgctgcgt tgaaggcaat
     1561 ttttgacggc acggaaacca ttcgcaaagt ggtggtaaaa attgcgatga gcgaaattga
     1621 ggagcaacga tgaaagcctt agctcaatta gtcggaaaac tgttagaaat cttggtggtg
     1681 gtgattttat ccgcaatgtc tattttggtt ttcgtcaatg tggtactacg ttacggtttt
     1741 aacagcagca ttagcgtgac cgaagaggtg tctcgctata tgtttgtttg gttggcgttt
     1801 ttaggggcgg tgttggcatt tagcgaaaat caacacgtta aagtcacaat gctgaccgat
     1861 aaattatcgc caacggctcg taatatctta agcgtagtca cagatttagc gatgttgttc
     1921 tgttgctact taattgtgga cggtagctgg attcaattta acctcaacct gaataacttt
     1981 gccccgattt caggcttacc gcaaggcatc actttccttg ccagcacagt ggcaggggta
     2041 ttaatcggtt tattaattat tgcccgcatt gtggcaacgg ttggcgtgat tgcaaaagga
     2101 gaaaaataga tgactgtggt aatttttctt tccgtcttgc ttggctcgat tttattgggc
     2161 attccggtag ctttcgccct gttggtctgc ggtgtggcgt taatgttgca tttagatctg
     2221 ttcgatgccc aaattttggc tcaacaaatt gtgagcggtg cagacagttt ctcgctaatg
     2281 gcaattccgt tcttcattct tgccggtgaa attatgaacg agggcggtct ctccaaacgg
     2341 attatcgacc tgccgatgaa attagtcggt cataaacggg gcggtttagg ttttgtagca
     2401 attttagcgg cgatgattat ggcaagcctt tccggttcgg cggtggcgga taccgcagcg
     2461 gtagtcgcaa tgctactgcc gatgatgaaa accaccggtt atccgattga ccgctctgcc
     2521 ggtttaatcg gtacggcagg gattatcgcc ccaatcattc cgccaagcat tccgtttatc
     2581 gtatttggtg tggctagtgg cgtgtccatt accaaactgt tcttagccgg tattttcccg
     2641 ggcattatga tggggatctg cttggctgcc ctttggtggt ggcaggcaaa acgtttggat
     2701 ttaatgacct tctccaaagc gaccaaagaa gaactttgca tttcatttaa aaacagtatt
     2761 tgggcgttat tgttgcctgt cattattatc ggtggtttcc gctcgggaat gttcacccca
     2821 accgaagcgg gtgcggtcgc aactttctat gccttgattg tttcactgtt tgtttaccgt
     2881 gaaatgaagt tcaaagattt atacaaggta gtgttggcgg cagcgaaaac cacggcagta
     2941 gtgatgttct tagtggcagc ggcaaatgtg accggctggc tgattaccgt agcggaatta
     3001 ccgatgatgc tcaccgagct gttagagccg ttaattgaaa gcccgaccac actcttattg
     3061 gtgattatgt tagcggtgtt tattatcgga atggtgatgg acttaacccc aaccgtgctg
     3121 attttaacgc cggtattaat gccgttggtg gaagaggcag gcattgaccc ggtttacttc
     3181 ggtgtgctgt ttattcttaa cacctccatc ggcttgatta caccaccggt cggcaacgtg
     3241 ctaaacgtga ttaccggcgt gtcgaaactg ccgttcgacc aagcggctaa gggcgtaatg
     3301 ccttacctcg taatgatgat ttgtttacta ctgttgttcg tgttcttccc gtcactggtg
     3361 ttagtgccgt taagctggat gcagtaatgg tttgaaccga aacaagcggt cgaattgacg
     3421 caaaaatttg caaatttttt tggcaaaaca gaccgcttgc aactcaattt ttaatcacag
     3481 gagaacccta tgaaattatt taatttaaaa accttatttg ccttagtggc aggcgttgcg
     3541 gtaatgagcg gctctgcaat ggcagaaacc tcactgcgtt ttggttatga agccccacgt
     3601 tccgataccc aacacatcgc cgccaaaaaa ttcgatgaat tattggcagc aaaaaccaaa
     3661 ggtgaaatta aattaaaact gtttccggac agcaccttag gtaatgctca aacgatgatc
     3721 agcggcgtgc gtggcggtac tatcgacatt gaaatgtccg gctcgccaaa ctttaccggc
     3781 ttagagccaa aactaaatgt gattgatatt ccgtttattt tcaaagatcg tgaacacgtt
     3841 tacaaagtat tagacggcga agttggtcaa ggcttattaa aagatttaga agcccaaggc
     3901 ttaaaaggct tagccttctg ggacgttggc ttccgtgctt tctccaactc aaaacaccct
     3961 gtgaccaagc cggaagacat caaaggctta aaagtccgca ccaaccaaaa cccgatgtac
     4021 attcaagcct tcaccttact aggcggcaac ccggtgccaa tgccactttc tgagctttac
     4081 accgcactcg aaacccgtgc cgttgatgcc caagaacacc caatcggcat tttctggtcg
     4141 gcaaaactgt ttgaagtaca aaaacattta agtttaacca accacggcta caccccgtta
     4201 atcgtggtga tgaacaaagc gaagtttgac ggcttagctc ctgaattaca aaccgcatta
     4261 gttgaagccg caaaagaagc cggtcaattc caacgtgatc tcaacgtgaa aaacgaaaaa
     4321 gagatcatcg aaaaattacg caaacaaggc atcgaagtga tcgaacaagt ggataacgcc
     4381 ccgttcaaag cagcgattga agcggaagtc cgcaaagctt tcgtggaaaa acacggcgat
     4441 gaattattga aaaaagtgga tgcgttagca cagtaattga ctttatttta gtctaaagct
     4501 ccctccgttt ggggggagtt gttgtataga ctctactata ggagagacta tgaaactgtt
     4561 taatttaaaa actttagccg ctttcgttgc cggttttgca ctgttttcaa ccgcacaagc
     4621 agaaacctca ttccgctttg cgtatgaagc tcctcgttct gatactcaac atattgcagc
     4681 gaaaaaattt aatgatttgc tgcaagaaaa atcccaaaaa gggctgaaat taagcctctt
     4741 ccctgatagc acgctcggca acgcacaaac ggcgattagc ggtgtgcgtg gcggtactat
     4801 tgatattgca atgtccagct cctctaactt taccgggtta gaaccaaaac tgaatgtgat
     4861 tgatattccg tttattttca aagacagaga ccacgcctat aaagccttag atggagagat
     4921 tggtcaaggt ttattaaccg cattagaggc tcacggtttg aaagggttgg cgttttggga
     4981 agttggtttc cgagcgtttt ccaactccaa gcacccgatc accaaaccgg aggatattaa
     5041 aggcttaaaa atccgtacta accaaaaccc gatgtatatt caagccttct ctattttagg
     5101 tgcaaatccg gtgccaatgc cgctttccaa gctttacact gcactggaaa ccaaagcggt
     5161 tgatgcccaa gaacacccaa tcggcatttt ctggtcggca aaactctatg aagtacaaaa
     5221 atatttcagc tttactaacc acggttacac cccgttaatt gtggcgatta acaaagcgaa
     5281 atttgatgca ctgccagccg agcaacaaac cgcattagtt gaagcggcaa aagaagccgg
     5341 aaaataccaa cgccaactta acctagaaaa tgagcagaaa attatcgact cgctcaaaaa
     5401 agcaggtatt gaatttgtgg ataacttaga taccacaccg ttcaaagatg ccgtatcggc
     5461 tgaaacccgc aaggcattta tcgagaaaaa cggtgatggc ttagttaaag ccattgatgc
     5521 attggcgaag taaaaataga gctacaaagt gctcggttaa actaacctca cacgaatcgt
     5581 gtgaggtaca agcggtcaaa atccgcaaaa tttttacaca tctttcctca aaggaggaac
     5641 aaatggcaca gcccatttta agtatgcagc acatcatcaa acgctttggt agccatacgg
     5701 cggtgaatga tgtcagcctt gatatccact caggcgagat cgttgcctta ctcggtgaaa
     5761 acggtgcagg taaatcgacc ctaatcaaaa tccttgccgg tatttatgac cgtgacgagg
     5821 gtgatattct tttccataac caaaaaatcc aatctgccca cgctattgag aaaggcaaca
     5881 aaaagcccat cgcttttatc caccaagatt taggcctaat agaatggatg acgattgccg
     5941 aaaatatggc atttgtaatg gggttccctc gcaaatttgg cttgattgac tgggcgaaag
     6001 tgcgagagca gtcgcaaaaa gcccttgatt ttgtaggcat taaactctct gccgacactc
     6061 gagtgtttga tttaagccgt accgaaaaag ccttactcgc cattgcccgt gcgattgccg
     6121 tcaatgcaga aatcttggtt ttagacgaac ctactgcttc cctacctgcc tctgatgtag
     6181 agcatctttt cactgtgtta aaccgcttac gttcccaagg tgtgggaatg atttatgtga
     6241 cccaccgttt agatgaagtg atcgccattt ccgaccgcat tttggtgatg cgggacggtt
     6301 tcccggttgc agaagggcaa accaagctct atgacgtcaa aggcttggtc aaagcgattg
     6361 taggcgaaga gagccgtggc agacagcggg tggatttacc aaccgatact cctgaaattt
     6421 taagcctgca aaatgtcgtg gttggcgaca ccggcccggt gaatttccgt ctgcacaaag
     6481 gtgagatgat tgcccttgcc ggcttgcgtg gagcagggca ggaagaaatc ggccgcttat
     6541 tatttgggga gcgaacctta gacaaaggcg aaattcagtt agacaagcgg tcatattctg
     6601 ctaaagatcc gcaagatgcg atagccaaag gtgtggcatt ggttgcggga gaccgcaccc
     6661 gtgaaagcgt gtttatgtca atgactacca gtgagaacct gtttatcaac ccggtactaa
     6721 gcggtcattc accattaaaa cgctactccc gccgtgaaga gtggggtgag agctggtaca
     6781 aattccaact attcgatatt cgtccgaaaa atttgtttat tgatgccagt gcgttatccg
     6841 gtggtaatca gcagaaaatc gtgttggcac gttggatgca cctcaatacg cctgttctga
     6901 ttttagaaga cccgactgcc ggcgtggatg taggagcaag ggcagagatt tacgacttgc
     6961 tcaacaaagc ccttgcagaa ggggtcgcaa ttattgtgat ttccaccgac tttgaagaga
     7021 tcgctcattt gtgtaaccga gcattagtct tcaaccgagg ggaaattgcc ggtgaactac
     7081 tgaacgaaga ggtgactttc gccaatttgc tggcgttggc atcggatagt cagtcgaaaa
     7141 aacaataact tactctcgcc cgcttgcggg agagagacag ctaaaaatag cgtcaggcta
     7201 tttttagcag agagagggta aacaagcggt catttttctt aaaaaatatt gcgaaccctc
     7261 tccctccgaa agcctaacgg ctttctcctc cctctcccgc aagcgggcga ggggaaaatg
     7321 cagaatttta acggagtaat ttatggctca aacaaacatc aaatcaaccg cactggaaca
     7381 accggtatct atcgcccgtg acggttttat ggcatggttt tcacaaatgt ccactcgtta
     7441 tggcttactg tggttatgtg tgttattggt gattattttc tcacttacca ccgaatcttt
     7501 cgcctcaatg ctgacattaa atgcgatttt agaaagtaaa tcgaaaattg ccctacttgc
     7561 tttggcagcc acaactacaa tgattgtcgg caaaatcgac ctgaacgtgg gtttcggtat
     7621 tgtgttgtgg cacattcttg tgattactct gcaagtccaa tacggcttct cgtggtatat
     7681 ggcgatctta atcgtgttag tgattgccgc tctttacggc ttgctgaatg ggattttagt
     7741 tgctcttgct gatatcgata gctttgtggc aacacttggc tcaggcacag tgctttatgc
     7801 cgtagcactc tggcactcgg gcggtcgcca aattgtcggg gatttacccg atgaatttat
     7861 cgcactcaac agcacagaaa ttttcggtat cccgatttct gctttctatg tgctggcagt
     7921 ggctatcgta atgtggttgg tgacagaaca taccccgacc ggtcgttgta tgtatgcggt
     7981 tggtggcaac ccaacggcag ctcgcctaaa tggtatcaat attaaaaaat acaccattgt
     8041 gccgtttatt gtctctagtg taatcactgc tttcacaggc gtattgatct ctgctcaaca
     8101 aggcgttggt caggcaagtg tcggtatgga ctacttactg cccgcattgg ttggggcatt
     8161 cttagggagt accactattc gcccagggcg tattaacgta tggggaacag tggtggggat
     8221 tgccattctt gccatcggta tttcaggtat tcaacaattc ggtggagcgt tctgggttga
     8281 gccactcttt aacggtgcaa cactgttact ttccatcact attgcaggct atgcccaacg
     8341 caaacgcttg ttaaatcaaa aagctgtaca gaaaaaatcg accaactaag aggatttgat
     8401 tatgaaaaaa gcatttcgta caaccttaac tgcaatcgca accttaactg ctattgcttt
     8461 cggaaataat gcgtttgcca atgacgaccc gttcgtacaa gaagcaaaac agcttgtcgc
     8521 agcagctacg gctaagcaag aaaaatggga cggaccgaca accggccctc aattacaaaa
     8581 agagaaaact gtgattttta ttgcctctga tatgaaaaac ggtggtgtac ttggtgtgat
     8641 tgacggaatg aaagaagctg ttggcgtaac gggctggaag ttagatgtat tagacggtgc
     8701 aggtacggta aacaaccaac tcgccgcact taaccaagcg attgcccgca aaccggatgc
     8761 gattgtgatt ggtggctgga acccgaatgt ggcgaaaatc ccactacaaa aagcgactaa
     8821 aaacggcatt aaacttgcag cttggcacgc aacaccggag ccgggtgcga ttgataaata
     8881 cggcattttc tacaacgtga cctctgactc agacgaaatt gcacgcttat cggcaatgct
     8941 tgcggtggca gaatctaacg gtaaggcaaa agcgattatt ttaaccgact cgctatatga
     9001 aattgcgtta cgcaaagcga acgtcatgaa agaagttatc gaaaaatgta aagagtgtaa
     9061 ggtgttagag tttatcgaca cgccattggc ggatacctca agccgtatgc ctaacctcac
     9121 tttcagctta ctgcaaaaat atggcgacga tttagagtat gcgttggcaa ttaacgatct
     9181 ctactttgac tttatggctc cgtctttacg caccgctggt aaagataaac cgtttagcat
     9241 ttccgcaggt gatggctcag taacggctta tcaacgtatt cgcaatggtg ataaacagtt
     9301 tgcaaccgtc cctgagccac ttaacttaca cggctggcag ttagtcgatg agctaaaccg
     9361 tgctttcgct aacgaaaaac cgtctggtta tatcacaccg gctcacctag tgactaaaga
     9421 aaatgtggcg tttgacggtg gtgaaaacaa cctgtatgcc ccacaaaacg gttacaaagg
     9481 cgcttacaaa gcgatttggg gcgtgaagta atgacgtagg ggcaaataaa tatttgcctc
     9541 gaacaagcgg ttgttttttg caaagatttt gcgaaattta accgcttgtc ataaaaaata
     9601 gagagggtaa tacaaatgag caataaattt atccccaaaa tctccaaccc tcgttttaat
     9661 gagctggttg ggaatacgtt tgaacttgaa gagctttttg ataaggcaat ctgggcagaa
     9721 gggccggcgt ggagcaagcc acaacaagcc ctctatttta gtgatgtaaa aggttgcaca
     9781 atgtaccgct ggacagagca agatggtaca caggttttcc gccagccgtc ttatttttct
     9841 aacggcaatg cgtttgatgc aaacgacaac ttgattacct gtgaacacgg caatcgaggt
     9901 atcagtttaa ccacgccaag cggtgaatat cgttttttgg tcggtcaatt agacggaaaa
     9961 cgactgaact cacccaatga tgtggtggta aaatcagacg gcatcatttg gttcactgat
    10021 ccaccttacg gtattttgtc ggataacgaa ggcaaacagt cgccaagcga aattatcggt
    10081 tgttatattt actgctatga tccgaaaacc gacaagctga atattgcaac tttcaacacg
    10141 atgcgaccaa acggcttggc cttctcgtca gacgaaaaac aactctttgt ggcagatatg
    10201 tcgagcgtgg aatttgacga agatggctta caccacttag tcgtatttga tgtggacggt
    10261 aataaactaa aaaatcgccg agatgtggcg gaaattagtc ccggcattcc ggacggcttc
    10321 cgaattaaac aaaacggcgt aattttctgc tcttgtgaag agggaattat tgctatttta
    10381 cctgacggca cggagctggg acgatttgtg ctgggtaagc taacctcaaa ttgtagcttt
    10441 ggcgatgatg aacaaacact gtttattact tgttcgaata gcgtttatcg tttaacaatt
    10501 aaatagcaga atgcattaag tgcgtctgtt gtagcattac aagcggtttc tttttcaaaa
    10561 ttttttacaa acaaataatg gataacaaaa tgaactacac actcggcatt gattgcggtg
    10621 ggacttttat caaagccgct ctttttgata cacaaggtaa tattcaagcc cttcatcgtg
    10681 aaaacgtttc ggtaatcagt gaacaggcag gttatgcaga gcgtgatatg tcacaactct
    10741 gggctatttg tgcggaagta gtgcgttcaa ccattgaaaa aagtggggta aacccagcgg
    10801 atattaaagc agtagggatt tccgctcaag gcaaaggggc gtttttactg gataagcaga
    10861 atcgaccgtt ggggcgtgcg attttatctt ccgaccaacg ttcccttgag attgttaaac
    10921 aatggcaggc tgaaggcatt ccgcaacaac tttacccgat tacccgccaa actctttgga
    10981 caggacaccc tgtgtcgatt ttgaagtggg tgcagcaaaa tgaaccggag cgttatgcac
    11041 aaatcggggc ggtgttgatg tcgcacgact atttgcgttt ttgcttaacc ggtgagttgc
    11101 attgcgaaga gaccaacatt tccgaaagca atctttacaa tatggaaaaa ggcgaatacg
    11161 accaacagtt agccgatttg ttgggaatgc cggatgtgtt ggagaaatta ccaccagtga
    11221 ttgaaccgaa taaaatttcg ggatatgtga ctgaaaatgc cgccaaatta accggtttag
    11281 cggtgggtac gccgatagtc ggtggcttgt ttgatgtggt ttctaccgca cgttgtgcca
    11341 atttagatga cgaaaccaaa ctgaatgcag tgctgggaac gtggtcggtg gtgagcggca
    11401 ttaccgatca tattgatgca agccaatcat taccttttgt ttatgggcgt tatgccgagg
    11461 cagggaaatt tatcgtccac gaagcaagcc cgacttctgc cggtaattta gagtggtttg
    11521 tgaatcagtg gaaactcgat tatgtgaaaa tcaaccaagc tgttgcccaa ttaccgccgg
    11581 cggcaagctc ggtgctgttt gtgccgtttc tgtatggctc aaatgcaggc ttaggaatgc
    11641 aagccggttt ctatggtatg caagcccacc atacccaagc ccatctcttg caggcaattt
    11701 acgaaggagt gttgtttagc ttgatgagcc atttaaaccg tatgtttatc cgctttccaa
    11761 aggctgacgt gctgcgagtt accggcggac cggtgaaatc taaagtttgg atgcaaatgt
    11821 tggccgattt aaccggaatg cggcttgaaa taccacaaat ggaagaaacc ggctgcttgg
    11881 gtgcggcatt aatggcaatg caaggggttg ggctggatat aagccaagtt caagccctaa
    11941 ataatgaaat gcaggtgttt gagccaaatc cggaaaatta tgcggcttat cagacgaaat
    12001 atcagcgtta ccaaaaatta actgaagcat taaatacaat gatttaacct gaatttatgc
    12061 ttttacaagc ggtaatattt ggttactttt ttgcaaaaat tactgctttt tt
//
LOCUS       DANMBQ010000075        12111 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.075, whole genome shotgun sequence.
ACCESSION   DANMBQ010000075 DANMBQ010000000
VERSION     DANMBQ010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12111)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12111)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12111
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.075"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(77..1828)
                     /locus_tag="PXE92_001683"
     CDS             complement(77..1828)
                     /locus_tag="PXE92_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5760909.1"
                     /translation="MDKRSRWSCLVNEQGEISEWEDKAGADYFAELPQICHYAQALLY
                     SDKNSLQFYYSSNHQWLKISLERHQSFVLTQAEHTDLPYGLSKREIELLTLISSGLSN
                     EDIANELCISKRTVDKHIENIFAKTHTKSRTLLAVFAITEHLICLPTPGKLTQSILAS
                     FNIEQLALQIIAKKQPLVTASTRHEPPIFTINHHHSRPIIIGVPYVEQGIGQIDTREL
                     LNGTQLAVETINQQGGIHGREVQVATAGFYVKDKASILQAYHHLFDQEVDAISTAYAC
                     YLPEVHELIATKGIPYLHIATHSGSNKLAQNLPNQRIENMFQVCASDVTYGLGISHFL
                     QYYRYHYAPWLQNKTVMVVTVSWQKVDIGIESLTLSLREQGWNVDYLELTQEQDNYAT
                     LMAQVHNLAPSIIVFASYFAEDIVQFYQTFIRNPTNAIIYSIYAPSAFLPHEKLCEGV
                     LWSTNSGLSENYLGRQFSQHYERFFGKSPTYSQASIAYDQANILANAWKQSVSPRHFK
                     AVSNAIRLQPHYGVNGTYYFNTDSQIGLTYAETHDLSISLPQLVYQIQQGQSRVIAPE
                     LFANAQFILPPWFSEKA"
     regulatory      1992..2148
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            2137..3162
                     /gene="moaA"
                     /locus_tag="PXE92_001684"
     CDS             2137..3162
                     /gene="moaA"
                     /locus_tag="PXE92_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDL5760910.1"
                     /translation="MQSIIPIKNVGDDVVSGLVDRFQRQYTYLRLSITDVCNFRCNYC
                     LPDGYKPPSHKQTFLSVDEIQRVAKAFANLGTEKIRITGGEPTLRKDFLEIAHTISQT
                     PGIRKVALTTNGYRLERDVELWQQAGITDINVSVDSLDPRQFQLITGENKLQSILKGI
                     DKAFEIGYPKIKVNAVLMKQYTAPELDKFLTWIKDKPIQMRFIELMETGEMDSFFQAQ
                     HLSGQSVMTRLLQEGWQLQPKAMSDGPAKVLSHPDFKGEIGLIMPYEKNFCASCNRLR
                     VSALGKLHLCLFGEEGIDIRDLLASDEQQLQLETRLKSSLQGKREHHYLHIGDSGVRN
                     NLASIGG"
     gene            3663..4139
                     /gene="moaC"
                     /locus_tag="PXE92_001685"
     CDS             3663..4139
                     /gene="moaC"
                     /locus_tag="PXE92_001685"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDL5760911.1"
                     /translation="MTTFTHINQNGEANMVDVSMKQETVRIARAEAFVRMNAETLQMI
                     VSGNHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLEALPESNQVRIESL
                     CKLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMIIENVRLLSKSGGKSGDFKVD"
     gene            4132..4377
                     /gene="moaD"
                     /locus_tag="PXE92_001686"
     CDS             4132..4377
                     /gene="moaD"
                     /locus_tag="PXE92_001686"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005631889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HDL5760912.1"
                     /translation="MIKILFFAQVRELVATDRLDVEPTFTTAEALREHLSQQGKKWQL
                     ALEKGKLLVAINQTICPLETEIKDGDEVAFFPPVTGG"
     gene            4379..4834
                     /gene="moaE"
                     /locus_tag="PXE92_001687"
     CDS             4379..4834
                     /gene="moaE"
                     /locus_tag="PXE92_001687"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HDL5760913.1"
                     /translation="MFETLIEVQEAEFDQNRIYQWLSEQHSVGAATLFIGKVREMNLG
                     DNVSGLFLEHYPAMTKKALQEIVAQARTRWDLQRVAVIHRIGQLHTGDEIVLVGVSSA
                     HRGDAYHANEFIMDYLKTKAPFWKREQTQAGERWIEGRESDQQAAKKWQ"
     gene            4867..5349
                     /gene="ybeY"
                     /locus_tag="PXE92_001688"
     CDS             4867..5349
                     /gene="ybeY"
                     /locus_tag="PXE92_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDL5760914.1"
                     /translation="MENLYIDLQIACENTENLPSEQQFYTWVQKALAVEAKTDDFPES
                     EITIRIVDEAESHELNLTYRGKDKPTNVLSFPFEAPEGIEMPLLGDLVICRQVMEKEA
                     EEQGISAESHWAHLAIHGTLHLLGYDHIEEDEAVEMESLETEIMQSLGYEDPYLSEKI
                     "
     gene            5427..7445
                     /locus_tag="PXE92_001689"
     CDS             5427..7445
                     /locus_tag="PXE92_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Met) cytidine acetyltransferase"
                     /protein_id="HDL5760915.1"
                     /translation="MRTIAIITSPNNADFIQQGYFYIPENHQLKAIPFSNAKTILGQE
                     YPFAIYTMQAENGVNFNLDAFAILAGTIQENGTLFLLCPQWDNLENELDFDALRWNEN
                     QAIACPNFYQHFKQLVAKFGFEVRTNLPKLPATSGQIPSKIYQLTQEQQNILQNLPLD
                     PADIHLITAPRGRGKSTLAGRLAKALPAQNKVLITARSYSALPSFWRSAEQKIPFFAP
                     DNLIEQVKSKNISPNQWLFIDEAASLPLPILHTLCAYFEKVVLTTTTQNYEGTGRGFE
                     LKFPVMLDKPFKHWTLSQPLRWSENDPLEAFVTELLLLSEEKSPLFSKEGKGEIYSLR
                     SHYVPLLKQRSNAKRLWQKQLSKNISYSNKHLQEKIAFYHLLANAHYKTTPTDLRRLF
                     DGENQLLFSQQENEQLIGGIWAMQEGGLDEKLTQAIWLGERRPQGSLVAQYLCFQGNL
                     PQACKLHSIRISRIAVLPEKQNQGVGKRLISQFILQNSVEKRPLDFISVSFGLTTPLH
                     AFWQSCGFQLVQITPNKEASSGYQSAMMIYPISEQGKLFAQQATQAFARDFALQPFFT
                     EICEELQNFEQFRPLATHNLDERDWKNLTAFAHGKRTFSAAYVSLKRLYLSDKARFSE
                     LDIFERKGQKISKMEVENYRKLVLQNLNNKSFKIIYRFYYIFLCFCSC"
     gene            7510..8700
                     /locus_tag="PXE92_001690"
     CDS             7510..8700
                     /locus_tag="PXE92_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000462687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/tyrosine/aromatic aminotransferase"
                     /protein_id="HDL5760916.1"
                     /translation="MFSHIQAAPADSILGLGEAFKADSREGKINLGIGVYMTDEGKTP
                     IVKAVKEAEKRLLETENSKNYLTIDGVQAFNAATQALLFGEGAEVITSGRAKTAQSLG
                     GTGALRIAAEFIKRHTNAKNVWISTPTWPNHNGIFDAVGVNVKGYRYYNKETNGLDWE
                     NLIADLSQAEAGDVVLLHGCCHNPTGIDPTPAQWEQLAALSAEKGWLPLFDFAYQGFA
                     NGLEEDAYGLRAFVKNNRELLVASSFSKNFGLYNERVGAFTLIADNADDANRAFTQIK
                     SIIRVLYSNPSAHGASAVAVALADPDLKAQWIAELDEMRNRIKEMRSQLVQKLKEKGA
                     NKDFSFITEQNGMFSFSGLTPEQVDKLKDEFAIYAVRSGRINVAGITSKNIDALADAI
                     VKVL"
     gene            complement(8807..10108)
                     /gene="folC"
                     /locus_tag="PXE92_001691"
     CDS             complement(8807..10108)
                     /gene="folC"
                     /locus_tag="PXE92_001691"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDL5760917.1"
                     /translation="MNTLSIPKATDSLETWLSYLEQAHSKPIDMGLDRIRKVATELDL
                     LKPAPYVITVAGTNGKGSTCRLLEVTLLKAGFRVGVYSSPHLIHYNERVRINGEVLPD
                     ADHVQAFAKINAKKTASLTYFEFSTLSAFELFKQNQLDIVILEVGLGGRLDATNIIDP
                     SLAVIISIDIDHVAFLGDNREDIGREKAGIFRENIPVVIGEPDCPHSIKQIADSLNCH
                     AFYRGKDWQFEIKNNLFHWYSEEKSFTDLPIPLIPIPNAGTALAVLMQLPFEIDEKII
                     RQALNEAQMTGRFQTLTDTDFTHFSQPKPAAKVIIDVGHNPHAARYLADKLRELKQPN
                     QKIYAVFSALEDKDLSGIVEPLANIIDEWHCAGLDCWRGQTGEAVLAKLVNVLPNSTA
                     CSYENVAQASRVLFETANENDIVLVFGSFHTVADFMLWLET"
     gene            complement(10118..11014)
                     /gene="accD"
                     /locus_tag="PXE92_001692"
     CDS             complement(10118..11014)
                     /gene="accD"
                     /locus_tag="PXE92_001692"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HDL5760918.1"
                     /translation="MSWLDRILGRDSSSSSNAKSKVPEGVWTKCTSCEQVLYSEELQR
                     NQQVCPKCDHHMRIDARTRLLNLLDKDSAVEIAADLEPEDVLKFKDLKKYKDRLTAAQ
                     KQTGEKDSFIVLAGTLHNMPVVTASFNFEFMGGSMGSVVGAKFVKAAEKALAEKIPFI
                     CFSASGGARMQEALFSLMQMAKTSAILAKMKEQGVPFISVLTDPTLGGVSASLAMLGD
                     VNIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLEHGAVDMIVHRKEMRDTLSRL
                     CAKLTNQPTPFKVAELVVENAE"
     gene            11323..12105
                     /gene="mazG"
                     /locus_tag="PXE92_001693"
                     /pseudo
     CDS             11323..12105
                     /gene="mazG"
                     /locus_tag="PXE92_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991517.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
BASE COUNT         3679 a         2469 c         2527 g         3436 t
ORIGIN      
        1 aaaaataagt aaaaatacct attacctcga aagagtgaga ataatttgat ctaaggcaaa
       61 aatatgtagt gaaattttag gctttttcag agaaccacgg cggtaagata aattgtgcat
      121 tggcaaacaa ctccggtgca atcacacggc tctgcccttg ttggatttgg taaaccaact
      181 gtggcaagct gatagataag tcgtgggttt ctgcgtaagt taatccaatt tggctatcgg
      241 tattaaaata gtaagtgccg tttaccccat aatgtggctg taagcggatc gcattggaga
      301 cggctttaaa atgccgtggt gaaacactct gtttccacgc atttgccaga atattcgctt
      361 ggtcataagc aatactggct tgggaataag tgggcgattt gccgaaaaac cgttcgtaat
      421 gttggctaaa ctgtctgcct aaataatttt cgcttaaccc actattggta ctccaaagaa
      481 cgccttcgca aagtttctcg tgtggcaaaa acgccgaagg tgcataaata ctgtaaataa
      541 tggcatttgt tgggttgcga atgaacgttt gataaaactg tacaatatct tctgcaaaat
      601 aagaggcaaa cacaataatg gaaggtgcga gattatgcac ctgtgccatt aatgtggcat
      661 aattatcttg ctcttgggtg agttccagat aatccacatt ccagccttgc tcccgcaaac
      721 ttagggttaa actttcaata ccgatatcaa ctttttgcca actcaccgtt accaccatca
      781 ccgttttatt ctgaagccaa ggggcataat ggtaacggta atattgcaga aagtgagata
      841 tacctaagcc ataggttaca tcactggcgc aaacctgaaa catattttca attcgttgat
      901 tcggtaaatt ttgggcaagt ttatttgagc cactatgggt tgcaatatgc aaataaggaa
      961 tgcctttagt tgcaattaat tcgtgtactt ccggcaagta gcaggcataa gcggtggaaa
     1021 tcgcatcaac ttcttgatca aataaatgat ggtatgcctg aagaatactt gctttatctt
     1081 taacataaaa cccagccgtt gcaacctgta cttctctgcc gtgaatacca ccttgttgat
     1141 tgatggtctc aaccgcaagt tgagtgccgt taagtagctc tcgggtatcg atttgcccaa
     1201 taccctgttc aacataaggc acgccaataa taatcggacg actatgatgg tggtttatcg
     1261 taaaaatcgg tggttcgtgt cgagttgaag ccgttacaag cggttgtttt ttcgcgataa
     1321 tttgcaatgc cagttgttca atgttaaagc tggcaagaat ggattgggtt agttttcccg
     1381 gtgtgggtaa acagattaaa tgttcggtaa tggcaaaaac agctaataag gttcggcttt
     1441 tggtatgtgt tttcgcaaaa atattttcga tatgtttatc aacagtccgt ttgctgatac
     1501 aaagctcatt ggcgatatcc tcattgctca aaccactgct aattagagtg agaagctcaa
     1561 tctccctttt actcagtcca taaggcaaat cggtatgctc tgcttgagtc aatacaaacg
     1621 attggtggcg ttctaggctg atcttaagcc attgatggtt tgaactatag taaaactgca
     1681 agctattttt atctgaatag agcaatgcct gtgcatagtg gcaaatttgc ggtaattcag
     1741 caaaatagtc tgcccctgct ttgtcttccc attctgatat ttcgccttgt tcatttacta
     1801 aacaagacca tcggctacgt ttatccattc tcacctcgaa ctaaaaacgt tagctaaaat
     1861 agcaaaatta tctcggcatt aatatgatat aaatcaaact aagcaacggt tgccagattt
     1921 ttataggtag agcatacaat ttaaattata cctcttgcct aattaggttt ctcaccataa
     1981 aatgaaaacc aatttattga agactccgag cattatttcc taactctaaa aattaaagac
     2041 aaatttttga tatggaattt atgccagtaa cagcataaag ctgttcaaag gataacttag
     2101 aaatgggttg tcctctcgtg tttagaaagg tgtcaaatgc agtctattat cccaattaaa
     2161 aacgtgggtg atgatgtcgt ttcaggttta gttgatcgct ttcagcgtca atatacttat
     2221 ttgcgactat ccattactga tgtttgtaac ttccgttgta attattgctt gcctgatggc
     2281 tataagccgc cttcacataa gcaaactttt cttagcgttg atgaaatcca gcgggtggct
     2341 aaagcctttg ccaatttagg gacggaaaaa atccgtatca ccggtggtga gccaacttta
     2401 cgcaaagatt tcctcgaaat cgctcacact atttcacaaa cacccggtat ccgtaaagtt
     2461 gccctaacca ccaacggcta tcgcctagag cgtgatgttg aactgtggca acaagccggt
     2521 attaccgata ttaatgtgag tgttgatagc cttgacccac gccaatttca actgattacc
     2581 ggcgagaaca agttgcaatc tattttaaag ggtattgata aagcctttga aattggctac
     2641 ccaaaaatta aagtcaatgc ggtgctaatg aagcaatata ccgcccctga attggataaa
     2701 ttcctcactt ggatcaaaga caagccgatt caaatgcggt ttattgagct gatggaaacc
     2761 ggtgaaatgg atagtttctt ccaagctcaa catctttctg gtcaatcggt gatgacccgc
     2821 ttattacaag aaggctggca attacaaccc aaagcgatgt ctgacggccc ggcaaaagtg
     2881 ctttctcacc ctgattttaa aggcgaaatc ggcttaatta tgccctacga gaaaaatttc
     2941 tgtgcctctt gcaaccgctt gcgtgtttcc gcacttggta aactgcatct ttgcttattt
     3001 ggtgaagaag ggattgatat tcgtgattta ctggcaagcg atgagcaaca gttacagctt
     3061 gaaacccgcc taaaatcttc cttacaaggc aagcgagaac accactattt gcatattggg
     3121 gatagtgggg ttaggaataa tttggcgagt atcggtggtt aaacaaccac cgagcgtgtt
     3181 ttttctgtta cttttctttg cttcgccaaa gaaaagtaac caaaagaaag gcgaccccag
     3241 attttcctta atccttcgct tgttgctaac ttttgggacg aacttttcaa actcgccaac
     3301 tgcgttggct caaacacgaa aagttgtcct caaaagttta cgcaatcgct acggcggaaa
     3361 ataggggcaa gcggtacatt atttaagatt tttgcaagtt tttatttaaa aataaccgct
     3421 tgtaatgttc cagcttctcc cttctgaacc gcctgagcga ctttgaattt ataggaaaaa
     3481 tttagtgttt gagccaacga agttggcgag ttttaaattt ttccgttaaa caaattcaaa
     3541 taaaatgaag atagcggtga agtagggtgt gctttctttg gttactttct ttgcacaagc
     3601 aaagaaagta acaagaagac gctcaatatt aattttacaa tcaaatttaa agagacaaac
     3661 aaatgacaac cttcacccac atcaaccaaa acggcgaagc caatatggtt gatgtttcaa
     3721 tgaaacaaga aaccgtacgc attgcccgag cggaggcatt tgtgcgaatg aatgccgaaa
     3781 cattacaaat gatcgtcagt ggtaatcacc acaaaggcga tgtattcgca accgctcgaa
     3841 ttgccggtat tcaggcggcg aagagaactt gggagctgat tccactctgc cacccgttat
     3901 tgctttctaa agtggaagtt caactggagg cgttgccgga aagcaaccaa gtgcgaattg
     3961 aatcactctg taaactaacc ggcaaaaccg gcgtggaaat ggaggcatta accgcagcta
     4021 gtgttgctgc tctgactatt tacgatatgt gtaaagccgt gcaaaaagat atgattattg
     4081 aaaatgtaag attacttagt aaaagtggcg gaaaatcagg agatttcaag gttgattaag
     4141 atactttttt tcgcccaagt gcgtgaactt gtggcaacgg atagactaga tgttgagcct
     4201 acttttacca ctgccgaagc gttgcgtgaa cacttaagcc aacagggtaa aaaatggcaa
     4261 cttgcccttg aaaaaggcaa actgctggtt gcaattaatc aaacgatctg cccgcttgaa
     4321 acggagatca aagacggcga tgaagtggca ttcttcccac cggtaaccgg gggctaaaat
     4381 gtttgaaacc ctgattgaag tacaagaagc tgaatttgac caaaaccgca tttaccaatg
     4441 gctcagtgaa caacatagcg tgggggcagc cactctattc atcggtaaag tacgtgaaat
     4501 gaatttgggc gataatgttt ccggtttgtt tcttgaacac tatccggcaa tgactaaaaa
     4561 agcattgcaa gaaattgtgg ctcaagctcg cactcgttgg gatttacaac gcgttgcggt
     4621 gattcaccgc attgggcaac tgcataccgg tgatgaaatc gtattagtcg gtgtgagttc
     4681 tgctcatcga ggtgatgcct accacgccaa cgagtttatt atggattatc tcaaaaccaa
     4741 agccccattt tggaaacgag aacaaaccca agccggtgaa cgttggattg aagggcgtga
     4801 gagtgaccaa caagccgcca aaaaatggca atagaaaaaa tggcaataat ttgcaaaagg
     4861 taacgaatgg aaaatttata tattgatttg cagatcgcct gcgaaaatac cgaaaactta
     4921 ccaagtgaac aacaatttta tacttgggta caaaaagccc tcgcagttga ggcaaaaacc
     4981 gatgatttcc ctgagagtga gatcaccatt cggattgtcg atgaagcaga aagccacgag
     5041 ctaaatctga cttatcgtgg taaagacaag ccaaccaatg tgctatcttt cccgtttgag
     5101 gcccccgaag gaatcgaaat gccactattg ggtgatttag tcatctgtcg tcaagtaatg
     5161 gaaaaagagg cggaagaaca aggtatttca gccgaatccc attgggctca tttggcgatt
     5221 cacggcacac ttcatctgct cggctacgac catattgagg aagatgaagc agtggaaatg
     5281 gaaagcctcg aaaccgaaat tatgcaaagt ttagggtatg aagatccgta tctttcagaa
     5341 aaaatatagt cttgtagggg agggtcctgt gccctccagt actccattat aatcggacag
     5401 gcacaggagc tgttcctaca agttatatga gaacgatcgc aatcataaca tctcctaaca
     5461 atgccgactt tattcaacaa ggctattttt acattcccga aaatcatcag cttaaagcta
     5521 tccccttttc caatgccaaa acgattttag gacaagaata cccttttgcc atttatacta
     5581 tgcaagcaga aaatggggtg aattttaact tagatgcttt tgcaatactt gccggcacta
     5641 ttcaagaaaa cggtacttta tttttgcttt gtcctcagtg ggataatttg gaaaatgaat
     5701 tagatttcga tgcgttacgt tggaacgaaa atcaggctat tgcctgcccg aatttctatc
     5761 aacattttaa acaattagtc gctaaatttg gttttgaagt cagaactaat ttgccaaaat
     5821 taccggctac aagcggtcaa attccttcaa aaatttacca attaacgcaa gaacagcaaa
     5881 atattttgca aaatctaccg cttgatcctg ccgatattca tttgattacc gcccctcgtg
     5941 ggcggggcaa atctaccctt gcagggcgac ttgcaaaagc gttacccgca caaaataagg
     6001 tattaattac cgcacggtct tattctgcat tgcccagttt ttggcgttcg gcagagcaaa
     6061 aaatcccttt tttcgcacct gacaatttaa tcgagcaagt taaaagtaaa aacatttcac
     6121 ctaaccaatg gctctttatt gatgaggcag ctagcctacc cttgccgata ctccacacac
     6181 tttgtgccta ttttgaaaaa gtggttttaa ccacaacaac ccaaaattac gaaggcacgg
     6241 ggcgaggatt tgagctgaaa ttcccggtaa tgttggataa accgtttaaa cattggacgt
     6301 tatctcaacc attgcggtgg agcgaaaatg atcctctcga agcatttgtg actgagttgc
     6361 tattactttc cgaagaaaaa tctcccctct ttagcaaaga ggggaagggg gagatttatt
     6421 cgcttcgctc acactatgtg ccgttgctaa agcaacgttc aaacgcaaag cgtttgtggc
     6481 agaagcaatt atcgaagaat ataagttatt cgaataagca tttacaggaa aaaatcgctt
     6541 tctaccactt actcgccaac gcccattaca aaaccactcc aactgactta cgccgtttat
     6601 ttgatggcga aaatcagctt ttgttttcac aacaggaaaa cgagcaactt atcggcggaa
     6661 tttgggcaat gcaagagggt ggtttagatg aaaaattaac ccaagccatt tggctagggg
     6721 aacgccgtcc gcaaggcagt ctagtggctc aatatctctg ttttcaaggg aatttaccgc
     6781 aggcttgcaa attgcattcc attcgcattt ctcggattgc ggtattgcct gaaaagcaaa
     6841 atcaaggcgt tggcaagcgg ttgatttctc agtttatttt gcaaaattcg gtagaaaaac
     6901 gaccgcttga ttttatctct gtgagctttg ggctaactac tccactccac gcattttggc
     6961 aatcttgtgg tttccaactt gtgcaaatca caccgaataa agaggcaagc agtggttatc
     7021 aaagtgcaat gatgatttac ccgatttcgg agcaaggaaa gttatttgca cagcaggcaa
     7081 cccaagcctt tgccagagat ttcgcccttc agccattttt cacggaaatt tgtgaggaat
     7141 tgcaaaattt cgaacaattt cgaccgcttg ccacacacaa tttagatgaa cgtgattgga
     7201 aaaatttaac cgcgtttgct catggcaagc ggacgttttc agcggcgtat gtgagtttaa
     7261 aacggcttta tttatcggat aaagcacgct tttcagagct ggatattttt gaacgaaaag
     7321 ggcaaaaaat ctccaaaatg gaggtggaaa attatcgaaa actcgttttg caaaacttaa
     7381 acaataaatc atttaaaata atttataggt tttattacat ttttttgtgt ttttgctctt
     7441 gctaaatctg caatttaatc gtataaattc actgtttatt tttcattttg atgaggaact
     7501 ccaatgtcaa tgtttagtca cattcaagct gctccggcag actcaatttt aggcttaggt
     7561 gaagcgttta aagcagatag ccgtgaaggt aaaatcaacc ttggtatcgg tgtttatatg
     7621 accgatgaag gcaaaacccc gattgtcaaa gcggtaaaag aagcagaaaa acgtttatta
     7681 gagacggaaa acagtaaaaa ttatttaacc attgacggtg ttcaagcatt caatgcggca
     7741 acgcaagcgt tattatttgg cgaaggggct gaagtgatta cctcaggtcg tgctaaaact
     7801 gcacagagtt taggtgggac aggggcatta cgcattgcgg cggaatttat caaacgtcat
     7861 acgaatgcga aaaatgtatg gatttcaacc ccgacttggc caaaccataa cggcattttt
     7921 gatgcagtag gcgtgaatgt aaaaggctat cgctactaca ataaagagac taacggttta
     7981 gattgggaaa atttaattgc cgatttaagc caagcggaag ccggagatgt ggtgttattg
     8041 cacggttgct gccacaaccc gaccggaatt gacccaacac ctgcacaatg ggaacagtta
     8101 gcagcattat ctgccgaaaa aggctggttg ccgttatttg actttgctta tcaaggcttt
     8161 gcaaacggtt tagaggaaga tgcttacggt ttacgagctt ttgtgaaaaa taaccgtgaa
     8221 ttgttggtcg caagctcatt ctcgaaaaac tttgggttat ataacgagcg tgtcggtgca
     8281 tttaccctaa ttgcagataa tgctgatgat gccaaccgtg ctttcactca aatcaaatcg
     8341 attattcgtg tactttactc taacccatct gctcacggtg caagtgcagt agcagttgca
     8401 ttggctgatc ctgaccttaa agcacaatgg attgcggaat tagatgaaat gcgtaaccgt
     8461 attaaagaaa tgcgtagcca attagtgcag aaattaaaag aaaaaggggc aaacaaagac
     8521 ttctctttca ttactgagca aaatggtatg ttctcattca gtggcttaac accggagcaa
     8581 gtggataagt taaaagatga gtttgcaatt tatgctgtgc gttcaggcag aatcaatgta
     8641 gcaggcatta ccagcaaaaa cattgatgct cttgccgatg cgattgtgaa agtgctttaa
     8701 ttaaacctta aagatatata gaggcataag cctgagtgct tgtgcctctt ttttatcttt
     8761 taggtacaag tgtggacact tgcaccaacg ttgattattc gtagaactag gtttccaacc
     8821 aaagcataaa atctgctacc gtatgaaatg agccgaacac cagcacaata tcattttcgt
     8881 tggctgtttc aaacaatact cggcttgcct gtgccacatt ttcatagcta caagcggttg
     8941 aatttggcaa aacgtttacc aatttcgcta acaccgcctc gcctgtttgt ccacgccaac
     9001 aatctagccc tgcacaatgc cattcatcaa taatattagc taatggctcg acaataccgg
     9061 ataaatcctt atcttctaac gcactaaaca ccgcatagat tttttgattt ggttgcttta
     9121 actcccgcag tttgtcagct aaataacgtg ctgcgtgtgg gttatgccct acatcaataa
     9181 ttacttttgc agccggttta ggttgagaaa aatgagtaaa atcggtatcc gtcagggttt
     9241 gaaaacgccc tgtcatttga gcttcattta aggcttgtcg aataatcttt tcatcaattt
     9301 caaatggcag ttgcattaat actgctaatg cggtgccggc gtttggaatc ggaataagcg
     9361 ggattggtaa atcggtaaag gatttttctt cagaatacca atgaaacaga ttattcttaa
     9421 tttcaaactg ccagtcttta ccccggtaaa aagcgtgaca atttaacgaa tcagcaatct
     9481 gtttaatcga atgagggcaa tcaggctcgc cgatgacaac cggaatattt tcacggaaaa
     9541 tgccggcttt ctcacgcccg atgtcttcac ggttatcgcc taaaaatgca acgtggtcga
     9601 tatcaatcga gataatcacg gcaaggcttg gatcaataat attagtggca tctaatcgcc
     9661 cacctaatcc gacttctaaa atcacaatat cgagctgatt ttgtttgaat agctcaaatg
     9721 cagacagcgt actaaactca aaataagtga gtgaagcggt cttttttgca ttaatttttg
     9781 caaatgcttg gacgtggtcg gcatcaggta atacttcgcc gttaattcgc acccgttcat
     9841 tatagtgaat taagtgcggt gaagagtaaa caccaacccg aaatccggct tttaataagg
     9901 taacttctaa caaacggcag gtcgaaccct tgccgttagt accggcaacg gtaatcacat
     9961 aaggggcagg cttgagtaaa tccagctctg ttgcgacctt acgaatacga tctaagccca
    10021 tatcaatcgg tttagaatgg gcttgttcta aataggaaag ccacgtttcc aaagaatccg
    10081 tggctttagg tatgcttaat gtattcattc agatatttta ttctgcgttt tctacaacca
    10141 attccgccac tttaaacggc gttggttgat tggttaattt tgcacaaaga cgggaaaggg
    10201 tatcacgcat ctctttacga tgcacgatca tatcaactgc cccgtgttct aataagaact
    10261 cggcacgttg gaaaccttcc ggcagttttt cacgtacggt ttgctcaatt acacgaggac
    10321 cagcaaagcc gattagggct tttggctcag caatattcac atcgcccagc attgccaaac
    10381 ttgcggaaac cccacctaaa gttgggtcgg ttaatacaga aataaacggt acgccctgct
    10441 ctttcatttt ggctaaaatc gcactggttt ttgccatttg cattaaagag aataacgcct
    10501 cttgcatacg agccccgccc gatgccgaaa aacagataaa cggaattttt tcagctaaag
    10561 ctttttccgc agctttcaca aattttgcac ctactacaga ccccattgaa ccgcccataa
    10621 actcaaagtt aaaggaggcc gtaaccaccg gcatattatg caatgtaccg gcaagcacga
    10681 taaaagaatc tttctcaccg gtttgttttt gcgcggcagt taaacgatct ttatatttct
    10741 ttaaatcttt aaatttcaac acatcttccg gctctaagtc ggcagcgatt tcgaccgcag
    10801 aatctttatc taacaaattc aataaacggg tgcgggcatc aatacgcata tgatgatcgc
    10861 attttggaca aacctgttgg ttgcgttgta attcttcgct atagagaact tgttcacaac
    10921 ttgtgcattt tgtccataca ccttccggca cttttgattt tgcattgctt gatgatgaag
    10981 agtctctacc taaaattctg tctaaccagc tcattattat tccttttgga ttgagttgtt
    11041 gggttcacta aatggttgct attaaagcat aatttatcgg tttttgatat gttttcttga
    11101 catatcagat cactaactat gtgtataagt tcgataaaaa aacgcaatca gaagaatgat
    11161 taacatcacc acaatttgaa ttaagcgttt tttggttaat ttttccgctg ccattgctct
    11221 gctcatactt aataaatttc cgcattataa gcgaaaaagc acgggctatg tagaatttgc
    11281 aaaattttga tcaaaaataa ccgcttgtaa aaaggaaata ctatggcaac cattgaacaa
    11341 tttcttgagg ttgtaaacca acttcgtcac cctgaacacg gctgcccgtg ggatctcaaa
    11401 cagaattttg acacgatgtt ccccacttat tggaagaaac ctacgaagta gcggaagcga
    11461 ttcacaccca agatcgcact gccttgcgtg aagagttagg cgatttatta ctgcaagtgg
    11521 tatttttaag ccaattagcg aaagaggaag gcagtttcac ttttgatgat gtagtaacgg
    11581 atattcacga taaactgatt taccgccacc ctcacgtttt tggtgatgtg aaagctacta
    11641 acagcgaaga ggccttacaa agttgggaag cacaaaaagc gaatgatgca aaacaccgta
    11701 gccaagattc tatttttaga tgatttacct tttgctttgc ctgctcttac ccgtgcaaat
    11761 aagctacaaa aacggtgtgc aaaagttgga ttcgattggg ataaccctca cgatgtgctg
    11821 gcaaaagtcg aagaagaact cgatgaagtc aaagcagaaa tcgcacaata tccggctcgc
    11881 tccatcgagc ttgctgaaga attaggcgat ctcttgtttg cgattgtaaa tttatgccgc
    11941 cattatcata ccgatgccga ggaaatttta cgcaatgcaa atctaaaatt tgaacatcgc
    12001 tttcgaaaag ttgaaaaatc tgtgaaaaaa tcgggaagaa ctgtaaaaga atgtaaatta
    12061 gaagaactag atgtaatttg gcacaaaata aaagtggtaa aataaaaagc a
//
LOCUS       DANMBQ010000076        12109 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.076, whole genome shotgun sequence.
ACCESSION   DANMBQ010000076 DANMBQ010000000
VERSION     DANMBQ010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12109
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.076"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..395)
                     /locus_tag="PXE92_001694"
     CDS             complement(<1..395)
                     /locus_tag="PXE92_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760919.1"
                     /translation="MRFTSTINNVRLVEWEINITQGALVDLINQASSWAKAVVIDGIT
                     YYWMSFSKVCEELPAVFSKEDTVYRQYKVLKEKGIIDHFKMDGKDYVRLTEKGCEWNK
                     FEPIRESEKNPSIGNNSEQTRKNFRESSE"
     gene            complement(392..1075)
                     /locus_tag="PXE92_001695"
     CDS             complement(392..1075)
                     /locus_tag="PXE92_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory protein/antirepressor Ant"
                     /protein_id="HDL5760920.1"
                     /translation="MNQLLNISAPKASITMSSREIAELCEKEHRHVTRDIEAMFSQLD
                     IPAEGYAHFWTHPQNGQTYREFRLPYDLTLTLISGYSVILRKKIIDRWQELESRQGIP
                     QSFSQALRLAAEQQEVIEQQNHQLAIQAPKVAFVEHYVEVGTTKSLRETAKILNFPEK
                     RLIECLERYRVLYRQSGNLLPYQDKQAKQLFAVKTGTAEHGHNFTQTRVTAKGIEWIA
                     QRYASELGQ"
     gene            complement(1133..1321)
                     /locus_tag="PXE92_001696"
     CDS             complement(1133..1321)
                     /locus_tag="PXE92_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cro/Cl family transcriptional regulator"
                     /protein_id="HDL5760921.1"
                     /translation="MKKDDVLEHFGTLEKVAATLGISVSAVSQWGEIIPEKNAYRLQE
                     ITAGKLKVKHSLYRNRSK"
     gene            1446..2102
                     /locus_tag="PXE92_001697"
     CDS             1446..2102
                     /locus_tag="PXE92_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5760922.1"
                     /translation="MNTQTLGDRIKSRRKELKLTQKDLATALKGVSHVAVSQWESSTT
                     KPNSENILDLSTVLQCDISWLLRGNGESNVLPASLGMTKVPLISYIQAGQWTGIDDFR
                     ETCGDYEYILTDLEVSEDAFALEIKGDSMEPDFIEGDRVIIDPDVQPHAGEFVAAING
                     DYEATFKKYRPLEDLDEYGRQHFELIALNPDYHKLSTLKQEIRIIGTMVEHRIYRRKR
                     "
     gene            2114..2488
                     /locus_tag="PXE92_001698"
     CDS             2114..2488
                     /locus_tag="PXE92_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760923.1"
                     /translation="MTEFKDVKQAIVEAQLASTPKDKVVNDIMKGSAELLSANDIINR
                     LGIGADEFQELVNLPNHYLRINGGLGAAVYNTRRMFDTHVELVNQELEKNISFPKPDL
                     YILGKARWKKETFKKWLEEQCR"
     gene            2640..3377
                     /locus_tag="PXE92_001699"
     CDS             2640..3377
                     /locus_tag="PXE92_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL5760924.1"
                     /translation="MLSKQVLSISESRLSTYLFCFFRNDPTKQKEAIAIYTALQHRTG
                     IYFSLIQEIEVALRNEVSQLLRFAAPNHNLYEFFHFLANDSNAPLNAESKRQLQKAIS
                     ECGRNYNENDIISHISFGFWVNLFNYDIKRNQYVAYWQSVLKPIFGHRFSNFKDLYNT
                     LKQIMRFRNRLYHQEVVWNKRIAKKPTHALENLEKTYKQFELALQKIAPERFAFRQLS
                     QALIWQRQIFFDQQIFEAEIVILPQHI"
     gene            complement(3413..4009)
                     /locus_tag="PXE92_001700"
     CDS             complement(3413..4009)
                     /locus_tag="PXE92_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760925.1"
                     /translation="MKKLLMTLCCLPAFALANETGESCSKIEDSAKRLECYDSVFVKK
                     DTGKDEATDEKSNWEYEQKKDELRNATTYFAKIRSTNTIDFGFPYNSSSMNLMLRKDP
                     KYGNDVIFSVHGQFNGCMIESCKITVKFDDGKLESYRMIGADGGSNDTLFIENAKAMK
                     TFVDKLKKSKKLIVEASFYNYGKGQFTFDTQGLEWKHF"
     gene            4655..4840
                     /locus_tag="PXE92_001701"
     CDS             4655..4840
                     /locus_tag="PXE92_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760926.1"
                     /translation="MNKMKQLAPFALLILLLGIVGRMDYDDHIQMQRYKCERNQGFWQ
                     MESNGNQYCGGKYGTKN"
     gene            4824..5021
                     /locus_tag="PXE92_001702"
     CDS             4824..5021
                     /locus_tag="PXE92_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760927.1"
                     /translation="MARKIDAGVEIVEVDKRFIAKFFYDGKLQHTTYPQYNRQNAIML
                     INRKIERFNIGRDKPIKLYKE"
     gene            5024..5998
                     /gene="ssb"
                     /locus_tag="PXE92_001703"
     CDS             5024..5998
                     /gene="ssb"
                     /locus_tag="PXE92_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5760928.1"
                     /translation="MAGINKVIIVGRLGNDPELRTMPNGDSVAKISVATSTEWTDKTS
                     GEKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEGKLRTRKWQAQDGTDRWTTEIIA
                     DQLQMLGSSNSGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDDIRVRWITKEQA
                     KQFINNISTDWMKTICSFALLTGARRTEILSMTWDKIDFIRKVAIVSNDIAKSEKARS
                     LLLNDDAIELLQKQRGKNPKYVFVGSKGQALQDINRKIFNKATEKCLLVDFHFHDLRH
                     TWASWHVQAGTPLFTLKELGGWETLEMVKKYAHLNADHLLNHANSVKF"
     gene            complement(6085..6161)
                     /locus_tag="PXE92_001704"
     tRNA            complement(6085..6161)
                     /locus_tag="PXE92_001704"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6125..6127),aa:Arg,seq:tct)
     gene            complement(6186..6262)
                     /locus_tag="PXE92_001705"
     tRNA            complement(6186..6262)
                     /locus_tag="PXE92_001705"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6226..6228),aa:Pro,seq:tgg)
     gene            6432..7292
                     /gene="folD"
                     /locus_tag="PXE92_001706"
     CDS             6432..7292
                     /gene="folD"
                     /locus_tag="PXE92_001706"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDL5760929.1"
                     /translation="MTAQIISGSEVSSQIKKKVSEKIAHYLEQGKRNPGLAVILVGND
                     PASQVYVGSKRKSCAEIGIASKSYDLPEETTEAELLALIEKLNQDDSVDGILVQLPLP
                     KQIDSTKVIEAILPHKDVDGFHPYNVGRLSQRIPTLRPCTPYGVMKLLETTGVDLYGQ
                     HAVIVGASNIVGRPMALELLLGGCTVTVTHRFTKDLEHHVRQADILVVAVGKPEFIPG
                     EWVKDGAIVIDVGINRGADGKLKGDVEYSVASQKAAFITPVPGGVGPMTVAMLMQNTL
                     QTYENHLQAV"
     gene            7406..8857
                     /gene="thiI"
                     /locus_tag="PXE92_001707"
     CDS             7406..8857
                     /gene="thiI"
                     /locus_tag="PXE92_001707"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HDL5760930.1"
                     /translation="MKFIIKLFPEIMIKSDSVRKRFIKILTSNIRNVLLKETENVSVV
                     RHWDFIEVRAKVDEETALVLDLLKRTPGIHHILEVEETPFTDMHDIFEQTYAAVKAEL
                     EGKTFSVRVRRKGKHDFRSLDVERYVGGGLNQRIETAKVKLTNPDVTVRIDIEHDKML
                     LIKARHEGLGGYPIGTQEDVLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEI
                     GVKQMAYHIWSRYSTSHKVRFIAINFENVVGEILEKVDNGQMGVVLKRMMVRAASRIA
                     ERFDIQAIVTGEALGQVSSQTLTNLRLIDKASDTLVLRPLITHDKEQIIAMAKAIGTD
                     DIAKSMPEFCGVISKNPTVKAIETKILEEEGNFNFEVLEQAVQTASYLDIREIAQQTE
                     KEVVSVETTTELSKNDVVLDIRSPEEVDEKPFRLDGVEVKELPFYKLSSQFSTLDQSK
                     TYLLYCQRGVMSKLQALYLKENGYSNVKVFRVK"
     gene            complement(8902..9609)
                     /locus_tag="PXE92_001708"
     CDS             complement(8902..9609)
                     /locus_tag="PXE92_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwiC-like family protein"
                     /protein_id="HDL5760931.1"
                     /translation="MFKEKPVISNQHGALAMAMLPFLYAVIESGFSTLHIFFGLSWLF
                     LYFFSYPFLSLFSKKPTERNKKWAKIYFGLSILFALPLIYAQPSILQFLPIILPLGLV
                     QVHYAKQKDERNLWNDIAGILTFGIMGMAAYYLVTKQYQFEILLHPTLFFIATTFYIK
                     SMVRERRNPIYMEISIAIHLVLAMLYILCSLQAVFFAYLIATARAIIVPSFGWNVKQV
                     GMLEFPVILLFLASLIW"
     gene            complement(9677..10651)
                     /gene="pfkA"
                     /locus_tag="PXE92_001709"
     CDS             complement(9677..10651)
                     /gene="pfkA"
                     /locus_tag="PXE92_001709"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HDL5760932.1"
                     /translation="MSKKIKKIAVLTSGGDAPGMNAAIRGVVRTALNEGLEVCGIQDG
                     YYGLYHDKVIPLDRRSVSETINRGGTFLGSARFPDFKRPEVRKHCVETLKKYSIDALV
                     VIGGDGSYMGAKLLTEEFGYPCIGIPGTIDNDIVGTDYTIGYQTALETALDAIDRLRD
                     TSSSHQRISIVEIMGRHCGDLTLSAALAGGCEYVIVPEKGLDKDALMRSIEEGFHKGK
                     RHSIIAITELMTDVHALAKEIEARFGNETRATVLGHIQRGGSPCAFDRILASRMGVYA
                     VELLLQGFGGHCVGIQNEQLVHHDIIDAINNMRRPFKEELFEASRKLF"
     gene            complement(10758..11954)
                     /locus_tag="PXE92_001710"
     CDS             complement(10758..11954)
                     /locus_tag="PXE92_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDL5760933.1"
                     /translation="MLNTQFRTHFPFFEKSDGWTYLDSAATTLKPDVLIEATSEFYAS
                     AGSVHRSQYDLPQTEQYELARDLVAKRFNVETREAVIWTSGTTQSINTVAYGLEHQIA
                     AGDEIVISVAEHHANFIPWQQLAQRTRAKLVVLPLNDKYEIELETLKNALSEKTKIVA
                     FNLVSNVTGVRQPAEQIIPLIRQSCSAKIVLDIAQAVCSEQVDVQKLDADFYAFSAHK
                     MYGPNGVGVLTGKLQSLEQIQPLVFGGKMLKNITESELTVAELPYRLEAGTPNIAGII
                     GFGQVLAWLEKWDFVALNHQLYDLAEYTCKRLNSYQNLQIIGQQNTPTISFVVKNQHP
                     ADIAAFLTQSKIAIRQGEHCAKPYLRHLEEVGTVRLSLAHYNNQQDVEHFFNALDFTL
                     EILQES"
BASE COUNT         3746 a         2326 c         2475 g         3562 t
ORIGIN      
        1 ttttccgagc tttctcggaa atttttccga gtttgttcgg agttatttcc gatactcgga
       61 tttttttccg actcacggat cggctcgaat ttattccatt cacaaccttt ttcggttaaa
      121 cggacataat ctttaccgtc cattttgaag tggtcgataa tgcctttttc tttcaacacc
      181 ttatattggc ggtaaactgt atcttctttg ctaaaaaccg caggtaactc ttcgcaaacc
      241 ttgctaaatg acatccagta ataggttatg ccgtcaataa ccaccgcttt cgcccaactg
      301 gaggcttgat tgattaaatc gaccaatgcc ccttgtgtaa tattgatttc ccattccact
      361 aagcggacat tgtttatggt tgatgtaaat ctcattgtcc taactccgat gcgtaacgtt
      421 gagcaatcca ttcaatccct ttggcggtta ctctcgtttg ggtaaaatta tgaccgtgtt
      481 ctgccgtgcc ggtttttact gcaaaaagct gtttagcttg tttatcttga taagggagta
      541 ggtttcctga ttggcgataa agaactcgat atcgttctaa acattcaatc aaccgctttt
      601 ctggaaaatt gagtatcttg gcggtttctc gcaatgattt agtcgttccc acctcaacat
      661 aatgctccac aaatgcgact ttcggggctt gaatggctaa ttgatgattc tgctgctcaa
      721 tcacttcttg ctgttctgcc gccaaccgta gagcttgaga gaaagattgt ggaatacctt
      781 gtctgctttc tagctcttgc caacggtcga taattttctt gcgaagtatc acgctatagc
      841 cggaaattag ggtaagggtt aaatcgtaag gcaatcgaaa ttcccggtat gtttgcccat
      901 tttgagggtg tgtccaaaaa tgggcatacc cctcggcagg aatatctaat tgactaaaca
      961 tcgcttctat atcacgagta acgtgtcgat gttctttttc gcacaactca gcaatctcac
     1021 gactactcat cgtaatgctt gcttttggtg ccgaaatgtt taataattga ttcatcgaaa
     1081 atacctttcg tgtttaatta tgtatgaaag ccaccgttac agcggtggtt ttttatttgc
     1141 ttctatttct ataaagtgag tgtttgacct ttaacttgcc ggcagtgatc tcttgtaatc
     1201 tgtacgcatt tttctcagga ataatctcgc cccattgaga aacagcagat acactaatcc
     1261 ctaaagttgc cgccactttt tctagagttc cgaaatgttc gagcacatca tcttttttca
     1321 tattttctta attcctttct tgaattttat ttaagacctc ttaaatatac aattaaagga
     1381 aacttaagtc aataaatgtt aagataactt aacagcaact ttatttttac ctttaagggg
     1441 atactatgaa tactcagacc ttgggcgata gaattaaaag ccgtagaaaa gaattaaaat
     1501 tgacacagaa agatcttgct actgcgttaa aaggggtctc acacgttgca gtatctcaat
     1561 gggaaagtag tacgactaag ccaaattcag agaatatttt ggatttatct acagtattgc
     1621 aatgcgatat tagttggctc ttgcgtggta atggagagtc taatgttcta cctgctagcc
     1681 tcggtatgac taaagtccca ttaattagct atattcaagc cggacaatgg acgggaattg
     1741 acgattttcg tgaaacctgt ggggattatg aatatatcct aactgatctt gaggtgtctg
     1801 aagatgcttt tgccctagaa atcaaagggg actcgatgga gcctgatttt attgaaggag
     1861 accgagtaat tattgatcct gatgtacaac ctcacgccgg tgagtttgtg gcagcaatta
     1921 atggcgatta tgaagccact ttcaaaaaat accgtccgtt agaagactta gacgaatacg
     1981 gaagacaaca ttttgagctt atcgctctta atccggatta ccataaatta tcaacgctaa
     2041 agcaagaaat cagaattatc ggcacaatgg tagagcatcg tatttatcgt agaaagagat
     2101 aggaattgat aatatgacag aatttaaaga tgtaaaacag gcgattgtag aagctcaatt
     2161 agcttcgaca cctaaagata aagtcgttaa tgacataatg aaaggaagtg cggaactgct
     2221 ttcagcaaat gatattatca ataggttagg tattggggca gatgagtttc aagagttggt
     2281 taatttacct aaccattatt tgcgtataaa tggagggtta ggtgctgctg tgtataatac
     2341 aagaagaatg tttgataccc atgttgagtt agtcaatcaa gagttagaaa agaatatttc
     2401 atttcctaaa cctgatttat atattttggg gaaagctcgt tggaaaaaag aaacatttaa
     2461 gaaatggttg gaagaacagt gtagataaag aaaaggtagg ttaaaaaacc taccttttct
     2521 gaaccgcaaa taagcgattc tcacacttta caaagcaatc cagctcctac gtctggggct
     2581 tcgggtccgt tgccagtgca agtattatta cattaaacta aacttgagta aaggaaaata
     2641 tgttgtccaa acaagtgcta agtatttcag aaagtcggct gagtacatat ttattttgct
     2701 ttttccgaaa tgatcccaca aaacagaaag aagctattgc aatttatacc gccttgcaac
     2761 atcgaacagg aatttatttt tcattgattc aagaaataga ggtggcacta agaaatgaag
     2821 tcagccagtt gttacgcttt gctgcaccta atcataattt atacgaattc tttcattttc
     2881 tagcgaacga tagtaatgct cctcttaatg cagaatctaa acgccagcta caaaaagcca
     2941 ttagtgaatg cggacgtaac tataatgaaa atgacataat ttctcatatt tcttttggat
     3001 tttgggtaaa tctgtttaat tatgatataa agcgtaatca atatgttgct tactggcaaa
     3061 gcgtattaaa gcctattttt ggacatagat ttagtaattt taaggattta tacaatacat
     3121 taaagcaaat tatgcgtttt agaaatcggc tgtatcatca agaagtggtt tggaataagc
     3181 gaattgccaa gaaaccaacg cacgcactag agaatttaga aaaaacttac aagcaatttg
     3241 agttagcact acaaaagata gcacctgaac gatttgcgtt tcgtcagctt tcacaagcac
     3301 ttatttggca acgccaaatc tttttcgacc aacaaatttt tgaagctgaa atcgttattt
     3361 tgccccaaca tatctaagca aaaagctacg catctatgta gctttttctt aattaaaaat
     3421 gtttccactc taacccttgt gtatcaaagg taaattgccc tttgccataa ttgtaaaaac
     3481 tcgcctctac aattagtttt ttcgactttt tcaacttatc tacaaaggtt ttcattgctt
     3541 ttgcattttc aatgaaaagc gtatcattgc tgccaccatc cgccccaatc attcgataac
     3601 tttccaattt accatcatca aacttcacag taattttaca gctctcaatc atacagccat
     3661 taaattgacc gtgtacgcta aaaattacat cattgccata tttagggtct ttgcgtaaca
     3721 ttaaattcat tgatgatgaa ttatacggga aaccaaaatc tattgtgtta gttgatctaa
     3781 ttttagcaaa gtaagtcgtt gcattacgca attcatcttt cttttgttca tattcccaat
     3841 tagacttttc atcggtagct tcatctttac cagtatcttt tttcacaaag acactatcat
     3901 aacattctaa gcgttttgca ctatcttcaa tcttagagca actttctcca gtttcgttag
     3961 ctaaagcaaa agcgggcaaa caacataaag tcatcagtag ttttttcata taacctccat
     4021 agaaatccct tcttattttc tcaaaagcgt ggttttcggt ctgtgatcaa gctcgcaatc
     4081 tcaataatta tattttaatg gtttaaaaaa caatcaatta agaaatcata actaattgaa
     4141 atttaagaaa tcttaaaaat acttattaaa taagcttaaa ttttgattga cttgtaattt
     4201 aagttttctt aaacttaatt catcaaaacg agctacggct caatgctctt taacaattcg
     4261 gtgcttgtgc ggacgatatt aacaacctcg ggcagttgta aagtaatgct ttataactca
     4321 gtaaggttgg ttagaccctg acatacaaat ttgaacgact tgccaaaaag aggtggcaag
     4381 gtttaggcaa cacactcgca aggtgtggag agctgaaaag gcaacactgg tatcagtcct
     4441 aagcaatcac gcttatctca agtttgagta agtacggata caagcagcac ccgacggaat
     4501 ggcgaaagcc gggcgggcga cggcgtgggc agacacgcat ttattccaaa gctcatttca
     4561 ccaagtgtgt ttcggaatac ccacaactag acgcaagtcg ctccatttgc ccaccgtaaa
     4621 acgtgggctt tttttaaccc taaaggacaa tcctatgaac aaaatgaaac aacttgcccc
     4681 atttgccttg ctaattttgc tattaggcat tgtcgggcga atggattatg acgaccacat
     4741 acaaatgcaa cgttacaaat gcgaacgaaa tcaaggcttt tggcaaatgg aaagcaacgg
     4801 caaccaatac tgcggaggga aatatggcac gaaaaattga tgccggtgtt gagattgttg
     4861 aggtagataa acgatttatc gccaagtttt tttatgacgg caaattacag cacacaacct
     4921 atccacaata caaccgccaa aacgcaatta tgttgattaa ccgcaaaatt gagcggttca
     4981 acattggcag agacaaacca atcaaacttt ataaggaata acaatggcag gaattaacaa
     5041 agtgattatt gtcggtcgcc taggtaacga cccggaacta cgaacaatgc caaatggcga
     5101 ttcagtcgcc aaaatcagtg tagcaacttc aaccgaatgg acggataaaa cctcaggcga
     5161 gaaaaaacaa gccacagagt ggcatagcat tatcgccttt cggaatttag ctgacattat
     5221 cggcaaatac ctgaaaaaag gctcgcaagt gtatgtggaa ggcaagctac gcactcgcaa
     5281 atggcaagcc caagacggca cagaccgctg gacgaccgaa atcatcgccg atcagctaca
     5341 aatgctcggt agctcaaaca gcggaaacag caataataat tgggcaaccg aaccggcagg
     5401 aaacccacca ccaaccaatc catataacca cgtaatgacg gattcagaat cacgagattt
     5461 tgatgatgat atccgggttc gttggattac caaagaacaa gccaagcagt ttattaataa
     5521 tattagtact gattggatga aaactatctg ctcttttgct ttattaacag gagcaaggcg
     5581 aacagaaata ctttctatga cttgggataa aatagatttt atccgtaaag tagcgattgt
     5641 ttcgaatgat attgccaaat ctgaaaaagc gagatcgctt ttacttaatg atgatgcaat
     5701 tgaattatta caaaagcaga gagggaaaaa tcctaaatat gtttttgtag gaagcaaagg
     5761 gcaggcatta caagatatta accgcaaaat atttaacaaa gcgactgaaa aatgtttatt
     5821 ggttgatttc catttccatg atttaaggca tacttgggcc agttggcacg ttcaggccgg
     5881 cacaccatta tttaccttaa aagaattggg tggctgggaa acattagaga tggtaaagaa
     5941 atatgcccat cttaatgcag accatttact caaccacgct aactcagtta aattctagtc
     6001 acaaattagt cacaaagtat ttttgacata ggaaattaat aactgatatt taaatgtaac
     6061 tatttgaaat ataagggtaa ttaatggcac gccctaaagg attcgaacct ttgacccacg
     6121 ccttagaagg gcgttgctct atccagctga gctaagggcg cagatgaaga taatataaaa
     6181 agaagtggtc ggcgagatag gatttgaacc tacgacccac tggtcccaaa ccagttgcgc
     6241 taccaagctg cgctactcgc cgacataaga tgttgttgat tatagatttc tttgcacaac
     6301 agtcaatctt tttttgtgaa tgtcggctta aatgattgaa gtttatccgt tattcaaaat
     6361 tagcttatca aaaaggctat tttttgagag aatgacgaat gttttgccaa gtgatatttc
     6421 gggaggtagt aatgactgca caaattattt cggggagtga ggtttcttca caaattaaaa
     6481 aaaaggtgag tgagaaaatc gctcattatc ttgaacaggg taaacgtaac cctggtcttg
     6541 cggtcatttt agtggggaat gacccagcct ctcaagtgta tgtggggagt aaacgcaaaa
     6601 gctgtgccga aattgggatt gcgtcgaaat cttatgattt acccgaagaa accacagagg
     6661 ctgaattatt agcactgatt gaaaagttga atcaagatga ttcggtcgat gggattttag
     6721 tccaattacc gttacctaaa cagatcgatt cgactaaagt gattgaagcc atcttaccac
     6781 ataaagatgt tgatggattc cacccttata atgttgggcg tttatctcag cgtattccca
     6841 ctttacgccc ttgcacgcca tacggtgtga tgaagttgct tgaaacaact ggggtagatt
     6901 tatatggtca acacgcagtg attgtaggtg cgtctaatat tgttggtcgc ccgatggcgt
     6961 tagaattgtt gcttggtggt tgtacagtca cagttactca tcgctttacc aaagatttag
     7021 agcatcacgt tcgccaagca gatattttag ttgtggcagt cggcaagcct gaatttattc
     7081 ccggggagtg ggttaaagac ggtgctatcg tgattgatgt agggattaac cgtggagcag
     7141 acggcaaact aaaaggtgat gtagagtatt cagttgcctc acaaaaagcg gcatttatca
     7201 cccctgtccc cggtggggta ggcccgatga cggtggcaat gttaatgcaa aataccttgc
     7261 agacgtatga aaaccattta caagcggtct aattttacgg atattttgca aatcctcggc
     7321 attggtcgag gatttctttt tctgggcttt ttcagcagaa aaggctaaaa tacttgccat
     7381 ttttattaca cgatccttat taaatatgaa atttatcatc aaacttttcc ctgaaattat
     7441 gattaaaagc gactctgttc ggaaacgctt tatcaaaatt ttaacctcaa atattcgcaa
     7501 cgtattatta aaagagactg aaaatgtgtc tgtggttcgc cattgggact ttattgaagt
     7561 tcgggcgaaa gtggacgaag aaacggcatt agtgctggat ttgcttaaac gcacgccggg
     7621 tattcaccat attttagaag tggaggaaac cccttttacg gatatgcacg atatttttga
     7681 gcagacttat gccgcagtga aagctgaact agaaggcaaa acgtttagcg tgcgggttcg
     7741 ccgtaaagga aagcacgatt tccgttctct tgatgtagag cgttatgtcg gtggtgggct
     7801 gaatcagcgg attgaaacgg cgaaagtgaa attaaccaac ccagatgtta cggtcagaat
     7861 tgatattgaa catgataaaa tgttgctgat taaagctcgc cacgaagggt taggcgggta
     7921 tccaatcggc acacaagaag atgtgttgtc attgatttcg ggtggttttg attcgggtgt
     7981 atcgagctat atgctgattc gcagaggttc tcgtgtgcat tactgttttt tcaatttagg
     8041 tggtgccgca cacgaaattg gcgtgaaaca gatggcatat catatttgga gccgttatag
     8101 tacctcgcac aaagtccgtt ttatcgccat taattttgaa aatgtagtgg gtgagatttt
     8161 agaaaaagtt gataacggac aaatgggcgt ggtattaaaa cgtatgatgg tgcgagcggc
     8221 aagccgtatt gccgagcgtt ttgatattca agcgattgtg accggtgagg cgttggggca
     8281 ggtctctagc caaacactga ctaatttacg tttaattgat aaggcatcag atacgctggt
     8341 attacgtccg ctcatcactc acgataaaga gcagattatt gcaatggcaa aagcgatagg
     8401 cactgacgat attgctaaat caatgccgga gttctgtgga gtaatttcta aaaatccgac
     8461 ggttaaggca atcgaaacta aaattttgga agaagaaggc aactttaatt ttgaggtact
     8521 agaacaagcg gttcaaacgg cgagttattt agatattcgt gagatcgctc agcaaaccga
     8581 aaaagaggtt gtttcggttg aaaccacaac agaattgagt aaaaacgatg ttgtgctaga
     8641 tattcgcagc ccggaagagg ttgatgaaaa accattccgt ttagacgggg ttgaagtaaa
     8701 agaactcccg ttttataaac tttccagcca gtttagtacg cttgaccaaa gcaaaaccta
     8761 cttgctctat tgccaacgtg gggtaatgag taaactgcag gctctttatt tgaaagagaa
     8821 tggctacagc aatgtaaaag tgtttcgagt gaaataatgc ctctttgatt gcaccttaat
     8881 gattgattaa ggtgcaattt tttaccaaat aaggcttgct aaaaagagta agatcacagg
     8941 aaattcaagc attccaactt gtttaacatt ccagccaaag cttggcacaa taatggctcg
     9001 ggcagttgca attaaataag caaaaaagac cgcttgtaga gagcagagta tgtaaagcat
     9061 tgctaaaacc aaatgtattg caatactgat ttccatataa attgggtttc ttcgctctcg
     9121 caccatactc tttatataga aagtcgtagc aataaaaaat agggtagggt ggagcagaat
     9181 ctcaaactga tattgtttcg ttaccagata ataagctgcc attcccatta tgccaaaggt
     9241 tagaatgccg gcaatatcat tccataaatt gcgttcatct ttttgtttgg cgtagtgaac
     9301 ttgcactaac ccaagcggta gaattatcgg taaaaattgc aaaatcgaag gctgagcgta
     9361 gatcaaaggt aatgcaaata gaatgcttaa gccaaagtag attttcgccc attttttatt
     9421 gcgttcagtt ggctttttac tgaaaagtga gagaaaaggg taggaaaaga agtagagaaa
     9481 cagccacgac agcccaaaga aaatatgcaa agtgctaaaa ccactttcaa taacggcgta
     9541 gagaaacggc aacattgcca ttgctaatgc accgtgttgg ttggatataa cgggtttttc
     9601 tttgaacatt caatttccct cttaatgtgg caaataaaaa ggcgactaaa cagccgcctt
     9661 taaattgtaa gaaaagttag aataattttc tagaggcttc aaataattct tctttgaacg
     9721 gacgacgcat attattgatc gcatcaataa tatcgtggtg aaccaactgc tcgttttgaa
     9781 taccgacaca gtgaccgcca aagccttgca gtaataattc caccgcatag acgcccatac
     9841 gggaggccaa aatacggtcg aaggcacaag gcgaaccacc acgttgaata tgacctaata
     9901 cggttgcacg ggtttcattg ccgaaacgtg cttcaatttc tttcgctaat gcgtgaacat
     9961 cggtcatcaa ttctgtaatt gcaataattg aatggcgttt acctttgtgg aaaccttctt
    10021 caatgcttcg cattaatgca tctttatcta agcctttttc cggtacgatc acatattcgc
    10081 aaccaccggc gagggcagca cttagggtta aatcaccaca gtggcgaccc ataatttcca
    10141 caatcgaaat acgttggtgt gaacttgaag tatcacgcag gcggtcaatc gcatctaatg
    10201 cggtttcaag ggcagtttga tagccgatgg tgtaatccgt tcccacaata tcgttatcaa
    10261 tcgtacccgg aataccgata caagggtaac caaattcttc ggttaataat ttagccccca
    10321 tataagaacc gtcgccacca ataaccacta atgcatcaat gctgtatttt tttaaggttt
    10381 cgacacaatg tttgcgaact tctggtcttt taaaatcagg gaagcgggca gaacctaaga
    10441 atgtaccgcc tcggttgatg gtttcagaca cggaacggcg gtcaagtggg atcactttat
    10501 cgtggtaaag cccatagtag ccgtcttgaa taccacaaac ctctaaacct tcattaagtg
    10561 cggtacgaac cacaccacgg attgccgcgt tcattcctgg tgcatcacca ccactggtta
    10621 atactgcaat ttttttgatt tttttactca tttaaaaaca ccttgttgat aaattaaagt
    10681 taaattggaa actggtgcaa ggttacaata ttcagccttt tcgttctact aaaaaatacg
    10741 tatttttttg atttagctta gctttcttgc aaaatttcaa gggtaaaatc tagagcgttg
    10801 aaaaaatgct caacatcttg ttgattattg taatgggcaa gtgaaagtcg aactgttccg
    10861 acctcttcta aatggcgtaa ataaggcttg gcacaatgct ccccttggcg gatcgcaatt
    10921 ttactttggg ttaagaaagc ggcaatatcg gcagggtgct gatttttcac cacaaagcta
    10981 atagtcggtg tattttgttg cccgataatt tgcaaatttt gataagaatt taaccgcttg
    11041 caggtgtatt cagccaagtc ataaagctga tgattaagag cgacaaaatc ccatttttcg
    11101 agccaagcta gcacttgccc aaagccgata atgccggcga tattcggcgt gccagcttcc
    11161 aagcgataag gtaactctgc cacagttaat tcactttccg taatgttttt cagcattttg
    11221 ccgccaaata caagcggttg aatttgctcc aaactttgca atttgccggt aagcacgccc
    11281 acaccgtttg gaccatacat tttatgggcg gaaaaagcgt agaaatctgc atctaatttc
    11341 tgaacgtcca cttgctctga gcaaactgct tgagcaatat ctaacacaat tttagcagag
    11401 caagattggc ggataagcgg gattatttgt tccgctggct ggcgaactcc tgttacgtta
    11461 gaaactaaat taaaggcaac aattttggtt ttttccgata acgcattttt aagggtttca
    11521 agctcaattt catacttatc attaagtggc aacaccacga gtttcgccct tgtacgctgt
    11581 gccaactgct gccaaggaat aaaattagcg tgatgttccg ccactgaaat tacaatttca
    11641 tcgcctgctg caatttgatg ctccaagcca taagccacgg tgttaatact ttgggttgta
    11701 ccgcttgtcc aaatcaccgc ttcacgagtt tccacattga aacgttttgc gactaaatct
    11761 cgagctaatt catattgttc ggtttgtggc aaatcgtact gactgcgatg caccgacccc
    11821 gcagaagcgt aaaactcact tgttgcttca atgagtacat caggtttcag cgttgtagcg
    11881 gcagaatcta aatacgtcca tccgtcagat ttttcaaaaa aagggaaatg ggtgcgaaat
    11941 tgggtgttaa gcataagtta attcctaaga gttgtggaaa attgagttac caagaaaata
    12001 cctattataa aggaatgttt tgaggtaaga agcatttcaa gaaataaata gatttatttt
    12061 gttatctttt tgttaaattc gtgttgacta ataaaattat ttttataaa
//
LOCUS       DANMBQ010000077        12027 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.077, whole genome shotgun sequence.
ACCESSION   DANMBQ010000077 DANMBQ010000000
VERSION     DANMBQ010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12027
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.077"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..687
                     /locus_tag="PXE92_001711"
     CDS             <1..687
                     /locus_tag="PXE92_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5760934.1"
                     /translation="HLITLFEDKNFISLDFFAGSSSFPHAILESNRIDKGNRKFIAVQ
                     YPEEIDIKSKNGKVAKQFCQRKNLPLYITEISKERIRRAGKQILQNNPENRPLDVGFK
                     VFKLTESHFKQWQSPTSENLADQLEMFIDPVSEKADTQAVLYELLLRLGLKLTAKVRL
                     ENKVFWVEENGLIFALLLNAADEEIIQTVIAQQPKKVIALDRLFNGNDARKKNTELQM
                     QDAGITFFVI"
     gene            697..3333
                     /locus_tag="PXE92_001712"
     CDS             697..3333
                     /locus_tag="PXE92_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5760935.1"
                     /translation="MELQFETLEYQLQAVNATVNLFVGQPNAATEFSLKAQNDMRFVP
                     NLGLQISDEQLQQNLANLQNRQKIDRTLLVEQGKNFTVEMETGTGKTYVYLRTIFELN
                     RQYGWQKFVIVVPSVAIREGVLHTLETTKSHFNTVFDNPSVNQKFEYKSNQTSRLKSF
                     ASANHIEILVMNIDAFTKESNVINTVNESGDAPIFYIQQANPIVIIDEPQNMETEIRR
                     NAIESLSPLFTLRYSATHKNAYNPIFSLNPVQAYEMGLVKQIEVDSVLAENEVNGAYL
                     SLKEIKTGAKSWSAKIEILFNDKKAMKKKVISVKPNQDLYELSNQNEMYRSGFILSGM
                     DTDSQMVSFSNGTQIFQGAEHSQLKEDVQKMQIRRTIGEHLQKEKKLRPLGIKVLSLF
                     FIDKVDNYRPSAQSPTGGKFAKWFEEIYLELAKEEPQGVHNGYFSQDKKGVAKDTNGT
                     TQADNETYQLIMRDKEKLLSLENPLRFIFSHSALKEGWDNPNVFQICTLNDTASEMKK
                     RQEIGRGLRLPVNQQGLRIYDRHLNTLTIIANESYEQFAATLQREIEEDCGVQFAKSN
                     VKKREDKKAVRYRKDFSLHPEFAAIWERIKHQTTYRVDFSNAELIESAVEKIRKMPDI
                     EATKIKHSKVKLEMNETGISTNYRSSNETAVNTQWAIPDLLSEIQKKTGLTRATLCKI
                     LQKSDRLQEVFRNPQRFIDLIAEKINLALQQIMTDGVEYHKIAGKTYEMTLFGDFDFY
                     LNQYTFEVQDKTKTIYEDYIALDSQTENIFARHCESSEQVEFYFKLPKRFKIPTPLGS
                     YNPDWAVVFKGENKIYLVAETKNTGKGIQAGVDEEKLDESERMKIDYARKHFKGLQRD
                     YKDLDYRVVQKVEELSAEYCKI"
     gene            3465..5897
                     /gene="gyrB"
                     /locus_tag="PXE92_001713"
     CDS             3465..5897
                     /gene="gyrB"
                     /locus_tag="PXE92_001713"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDL5760936.1"
                     /translation="MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHM
                     VFEVVDNAIDEALAGHCKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTV
                     LHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLA
                     IIGNTEKTGTSVRFWPSLDIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE
                     EHFKYEGGIKAYVEYLNEGKTHIHNTPFYLTTEKDGIGVEISLQWNDSYNENVYCFTN
                     NIPQRDGGTHLAGFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKV
                     PDPKFSSQTKDKLVSSEVRGAVESSMNEALSDYLAENPDDAKNIVTKIIDAARAREAA
                     RKAREMTRRKGALDLGGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAI
                     LPLKGKILNVEKARFDKMLSSQEVATLITALGTGIGRDDYNLEKLRYHKIIIMTDADV
                     DGAHIRTLLLTFFYRQMPELIENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDI
                     ALEGAGLYVSEDAPALSGVALENLIAQYNGVQKLIERLSRRYPTLLLNELIYSKPLSV
                     EFAKNQANMTAWSEQFVATLMAKEVGGSFYRINTLFNEERQIYEPEIIVTTHGMDSTY
                     RLDYNFINGNEYARIVALGNELNDLLSDSAYVVRGERRQEISSFAEALDWLVKESRKG
                     LTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAIAADKLFSTLMGDEVEPRRDF
                     IETNALYAQLDI"
     gene            complement(5950..6912)
                     /gene="cmoB"
                     /locus_tag="PXE92_001714"
     CDS             complement(5950..6912)
                     /gene="cmoB"
                     /locus_tag="PXE92_001714"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005707797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HDL5760937.1"
                     /translation="MIDFRPFYQQIATTDLSAWLETLPLQLKQWEKTTHADYAKWAKV
                     ADFLPNSTACINLKDKVESISSKPLSEGEVKQITHHLKQLMPWRKGPYHLHGIHIDTE
                     WRSDFKWDRVLPHLAPLKDRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFE
                     AVRKLLGNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVRGG
                     ELVLETLVIDGDINDVLVPADRYAKMKNIYFIPSVAALINWLEKVGFKNVRCVDEAIT
                     TLEEQRKTDWLENESLVDFLDPNDHSKTIEGYPAPKRAVILANA"
     gene            complement(7009..8772)
                     /locus_tag="PXE92_001715"
     CDS             complement(7009..8772)
                     /locus_tag="PXE92_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     accessory protein YcaO"
                     /protein_id="HDL5760938.1"
                     /translation="MSEQTFITGKDAALEDSIATFQHKLKTLGFNIEEASWLNPVPNV
                     WSVHIRDADCPQCFSNGKGASKKAALASALGEYFERLSTNYFWADFYLGQEIANSEFV
                     HYPTEKWFPIDDEAIPPMEMMDEFLWEYFDPNGEITPELLVDLQSGNYDRGIVTLPYV
                     RQSDNETVYIPQSIIGNLFVSNGMSAGNTKNEARVQGLSEVFERFVKNRIITEAISLP
                     EIPQSVIDGYPTIKASIEKLEQEDFPILCYDASLGGEFPVICVILLNPNNGTCFASFG
                     AHPNFQVAFERTVTELLQGRSLKDLDVFAPPSFNNEDVADHANLETHFIDSSGLISWD
                     LFKRDADYPFVHWDFSGTTEQEFNNMMAIFNKHNQPVYIMDYEHLGVYACRILAPGMS
                     NIYPSDDLVYANNNMGMDWREILLDLPHFHHDAETYQELLDELDEQSIDDLTRVREFI
                     GVVAEKGSAMQTLRIGELKSMLHLALGNLEQASDWANWTANMNASVFSAERNNYYRCL
                     IQSIELFLDEERDSEQYRMVFEKMYGKQAVEAAWGAIQGGNPFHGLTASDESLENMTA
                     HQKLLNAYRKVQKAKVNPIAR"
     gene            9036..11324
                     /locus_tag="PXE92_001716"
     CDS             9036..11324
                     /locus_tag="PXE92_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated helicase/endonuclease Cas3"
                     /protein_id="HDL5760939.1"
                     /translation="MEEHTIQSFYAHSGKLSDHSDWQTLLSHANNVGLLAAEFAAPFA
                     SQEIARCTGLLHDLGKYSERYQKRLHGGERVNHSTAGAKIAVERWGPLGKMMAFCIAG
                     HHAGLANGSGEGKNRSTLTQRLQEQFGYGHKDLPVLDAIWQQELNLPEKLPLPPLKPS
                     KNEPFFSYAFFIRMLYSCLVDADFLDTEAFYANLEKRPLERGNYPNLTALHQQFNQFI
                     AQFRERIATQTPNTQEAQRKAEVNRLRSEILDYAVSQAKQETGLFSLTVPTGGGKTFT
                     SMAFALEHAKQYGLCRIIYVIPFTSIIEQNAAEFRKAFGELGTEAVLEHHSTFDHDSL
                     PDKSSRDKLKLASENWDTPVVVTTAVQFFESLFADRSSRCRKLHNIVGSVIILDEAQM
                     LPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVREIAPNPTALF
                     EKLKRTTVKHIGIQTDVELQSKLADNPQMLIIVNNRRHARALYDSAKQLEGAYHLTTL
                     MCAKHRSQTLTEIRLRLKQNLPCRVIATSLIEAGVDVDFPLVMRAEAGLDSVAQAAGR
                     CNREGKRLSVESNVWVFQPEEQWKAPPELGLLSGCMRSTVQVHADDLLNPKAINHYFQ
                     AVYEAKGKELDKPNILKACHDAGQSLNFPFQKIAEDFRMITSHLIPVIIPFDQEAENL
                     IDRLRYADQVGGILRKLQPYTVQVPEKALAELYNAGRVETINETNFGKQFYCLIGMDL
                     YDEVAGLSWENVDFLESEKLVL"
     gene            11455..>12027
                     /locus_tag="PXE92_001717"
     CDS             11455..>12027
                     /locus_tag="PXE92_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760940.1"
                     /translation="MREPLLDEDELKKWLQTIFTDNLVIIVGSGLSCAEGLPGMGALA
                     DRLKERMPECLDDIDKVTWNTISDCLDSEGLEGALLKHQANETIEAAIIKITAEYVLS
                     EEQKAINKCIAENQKLKFSYLLPHISASNPKIARVITTNYDRLIEFAAEYENWGIDSM
                     MVGRYWGKHNPDLSRKLQIRDIRVKGKCPKL"
BASE COUNT         3788 a         2299 c         2581 g         3359 t
ORIGIN      
        1 catttaataa ctctatttga agataaaaat tttatttctt tagatttctt tgctggcagt
       61 tcatcatttc cacacgcaat attggaaagt aatagaattg ataagggtaa tagaaaattt
      121 attgcggttc aatatcctga agaaattgat atcaagagta agaatggaaa agtagcaaag
      181 caattttgcc aaagaaaaaa tttaccacta tatataactg aaatttcaaa agaacgtatt
      241 cgccgtgccg gaaagcagat tttgcaaaat aaccccgaaa accgaccgct tgatgtaggt
      301 tttaaagtct tcaaactgac agaaagccat tttaaacaat ggcaatcgcc cacatctgaa
      361 aatttagccg atcaacttga aatgtttatt gatcctgtta gtgaaaaagc ggatacgcaa
      421 gccgttttat atgagctttt attgcgttta gggttaaaac tcacggcaaa agtgcggttg
      481 gaaaataagg tgttttgggt ggaagaaaac gggctgattt tcgccttgct gttaaatgca
      541 gccgacgaag aaattattca aactgttatc gctcaacaac cgaaaaaagt catcgcttta
      601 gaccgtttat tcaacggcaa tgatgcccgg aagaaaaaca ccgaattgca aatgcaagat
      661 gccggcatta cgttttttgt gatttaagga gaaaaaatgg aactccaatt tgaaacctta
      721 gagtatcaat tacaagccgt taatgccaca gtaaatttgt ttgtcggaca gccgaatgcc
      781 gcaactgaat tttcactcaa agcccaaaat gatatgcggt ttgtgccgaa tttaggcttg
      841 cagattagtg atgagcagtt acaacagaat ttggctaatc tgcaaaacag gcaaaaaatc
      901 gaccgcactt tgcttgtcga acagggaaaa aattttaccg tggaaatgga aactggtaca
      961 gggaaaacct atgtctattt acgcacgatt tttgaattaa accgtcaata cggctggcaa
     1021 aaatttgtga ttgtcgtgcc gagtgtggca attcgtgagg gagtgttgca tacgttggaa
     1081 actacaaaaa gccattttaa tacggtattt gataacccga gcgtcaatca aaaatttgaa
     1141 tataaaagta accaaacttc acgcttaaaa tcctttgcta gtgctaatca tattgaaatt
     1201 ttagtgatga atattgatgc tttcaccaaa gaaagtaacg tgattaatac cgtgaatgaa
     1261 agcggtgatg ctccgatttt ctatattcaa caggcgaatc cgattgtgat tattgatgaa
     1321 ccgcaaaata tggaaacgga gattcgccgt aatgcgattg agagtttaag tccgcttttc
     1381 actttgcgtt attctgccac ccataaaaat gcgtataacc cgatttttag cctcaatccg
     1441 gtgcaagcct atgaaatggg attagttaaa caaattgagg tagatagcgt attggcggaa
     1501 aatgaggtaa atggagctta tctttccctc aaagagatta aaacaggggc aaaaagctgg
     1561 tcggcaaaaa tcgaaatttt atttaacgat aaaaaagcga tgaaaaagaa agtgattagc
     1621 gtgaaaccga atcaggattt gtatgagctt tccaaccaaa atgaaatgta tcgttcaggg
     1681 tttatattaa gcggaatgga taccgatagc caaatggtta gcttctccaa cggcacacaa
     1741 atttttcaag gggcggaaca ttcccaactt aaagaagatg tgcaaaaaat gcagattcgc
     1801 cgcactattg gcgagcattt gcaaaaagaa aagaaattac gaccgcttgg gatcaaggtg
     1861 ttgtctttgt tctttatcga taaagtggat aattatcgcc cttctgcaca aagccctacg
     1921 gggggaaaat ttgcaaaatg gtttgaggaa atttatttgg agctagccaa agaagagcct
     1981 caaggcgtgc ataacggtta tttctcacag gataaaaaag gcgtagcaaa agatactaat
     2041 ggcacaacgc aagcggataa cgagacttat caactgatta tgcgggataa agaaaaattg
     2101 ctttcgctgg agaatccgtt acggtttatt ttctcgcatt ctgccttaaa agaaggatgg
     2161 gataatccga atgtgtttca aatttgtact ttaaacgata ctgcaagcga aatgaaaaaa
     2221 cgccaagaga ttgggcgggg cttgcgtttg cctgtgaatc aacaaggatt gcggatttat
     2281 gatcgtcatc taaatacgct gacaattatc gcaaatgaaa gttacgaaca atttgccgcc
     2341 acattacagc gtgaaattga ggaagattgt ggtgtacagt ttgccaaaag caatgttaaa
     2401 aaacgggaag ataaaaaagc cgttcgctac cgtaaagatt tcagcttaca tccggaattt
     2461 gcggcaattt gggaacggat taaacaccaa accacttatc gggtagattt cagtaatgcg
     2521 gaattgattg aaagtgcggt ggaaaaaatc cgcaaaatgc ccgatatcga ggcgacaaaa
     2581 attaagcatt ccaaagtgaa attggaaatg aatgaaacag ggatttcaac taattatcgc
     2641 tcatctaatg aaacagcggt aaatacacaa tgggcgatac ctgatttatt gagtgagatt
     2701 caaaagaaaa ccgggctgac gcgtgcgacc ctttgcaaaa ttttacaaaa atccgaccgc
     2761 ttgcaagaag tcttccgcaa tcctcaacgc tttattgatt taattgcaga gaaaatcaac
     2821 cttgctttac aacaaattat gacagacggg gtggaatatc acaaaattgc cggaaaaacc
     2881 tatgaaatga cgttattcgg cgattttgat ttttacctca atcaatatac ttttgaagtt
     2941 caagataaaa caaaaacgat ttatgaagac tatattgcac tggattccca aacagaaaat
     3001 atcttcgccc gacattgtga atctagtgag caagtggagt tttattttaa attacccaaa
     3061 cgttttaaaa ttccaacgcc attaggcagc tataatcccg attgggcagt tgtgtttaag
     3121 ggagaaaata aaatttactt ggttgccgaa acgaaaaata caggcaaagg tattcaagca
     3181 ggagtagatg aagaaaaatt agatgaaagt gaacgaatga aaatcgacta tgcccgtaag
     3241 catttcaaag gcttacagag agattataag gatttggatt atagggttgt acagaaagtg
     3301 gaggagctgt ctgcggagta ttgtaaaatt taatctgtgg tcttgtagaa ttgagataga
     3361 ctgcaatttc aactaaaatt taaccgcttg ttttgcgata cttttacgca tttttctgct
     3421 ataatcggca caattttttc gatttcaaat tagtaggaat aagaatgtct gaacaaactc
     3481 aagcaacaag ttatgattct tccagtatta aggtgttacg cggcttagat gcggtgcgta
     3541 aacgcccggg aatgtatatc ggcgataccg atgacggtac gggcttacac catatggtgt
     3601 ttgaggtggt tgataatgcg attgacgaag cattagccgg gcattgtaaa gacattattg
     3661 tcacaattca ttccgataat tcggtttctg tgcaagatga cggtcgtgga attccggtgg
     3721 ggattcaccc ggaagaaggc gtttcggcag cagaagtcat tatgactgtt cttcacgcag
     3781 gcggtaaatt tgacgataac tcctataagg tttccggcgg tttgcacggt gtgggcgtat
     3841 cggtggtgaa tgcactttcc tctaaattac aactcactat tcgccgtgaa ggacacgttc
     3901 acgagcaatt ctatagctta ggtgagcctg atgcaccttt agcgattatc ggcaataccg
     3961 aaaaaacggg gacgtcggtt cgtttctggc caagtttgga tattttcaaa aataaaaccg
     4021 aatttgaata taaaattctg tctaaacgct tgcgtgaact atcatttttg aattcaggcg
     4081 tttcgattaa attaattgat gaacgagacg gcaaagaaga gcattttaaa tatgagggcg
     4141 gtattaaagc ctatgttgag tatttaaacg aaggcaaaac tcatattcac aatacgccat
     4201 tctatttgac cactgagaaa gacggcattg gcgtggaaat ttccctacag tggaatgaca
     4261 gttacaacga aaatgtgtac tgctttacca ataatattcc acagcgtgat ggcggtacgc
     4321 acttagccgg tttccgtggg gcattaactc gtgcgttgaa aaactatatg gataacagcg
     4381 gggtattgaa aaaagccgat gcgaacattg atgcctcagg tgatgatgcc cgtgaaggtt
     4441 tagtagcggt gatttcggtg aaagtgccgg atccgaaatt ctcctcacaa accaaagata
     4501 aattggtgtc gtcagaagtg cgtggagcag tggaaagctc aatgaatgag gctttatccg
     4561 actatttagc cgaaaatccg gacgatgcaa aaaatatcgt taccaaaatt attgatgcag
     4621 cccgtgcaag agaagcagct cgtaaagccc gtgaaatgac ccgccgtaaa ggggcgttag
     4681 atttaggcgg cttaccgggt aaattagctg attgtcagga aaaagatccg gcgttatcgg
     4741 agctttactt ggtggagggt gactctgccg gtggctcggc aaaacaaggg cgtgaccgta
     4801 aaaaccaagc gattttgccg ttaaaaggga aaattctgaa cgtggaaaaa gcccgctttg
     4861 ataaaatgct ttcttcacaa gaagtagcaa ccttgattac cgctttaggc acaggcatcg
     4921 ggcgtgatga ttataatttg gaaaaattac gttaccacaa aatcattatt atgaccgatg
     4981 cggacgtgga tggtgcacat attcgtacgc ttttattaac tttcttctac cgtcaaatgc
     5041 cggagctgat tgaaaacggc tatatttata ttgcacagcc accgctttat aaagtgaaaa
     5101 aaggcaagca agagcgttat attcaagata acgatgaaat gtcgcaatat gaaattgata
     5161 ttgcattaga aggtgcaggc ttatatgtga gtgaagatgc tccagcgtta agtggcgtag
     5221 cgttagagaa cttaattgcc caatataacg gcgtacaaaa attaattgaa cgtttaagcc
     5281 gtcgttaccc aacattatta cttaacgaat taatttattc aaaaccgctt tcggtggaat
     5341 ttgcaaaaaa tcaagcaaat atgaccgctt ggagcgagca atttgtcgct acattgatgg
     5401 caaaagaggt gggcggcagt ttctaccgta ttaatacctt gttcaatgaa gaacgccaaa
     5461 tttatgagcc ggaaattatt gtgactacac acggtatgga cagtacctat cgtttagatt
     5521 acaactttat caacggtaat gaatacgctc gcattgtggc attaggcaac gagctgaacg
     5581 atttactatc tgattcagcc tatgtggtgc gtggtgaacg tcgccaagaa atcagcagtt
     5641 ttgctgaagc cttagattgg ttggtgaaag aatctcgtaa aggcttaact attcaacgtt
     5701 ataaagggtt aggtgagatg aatccggaac aattatggga aaccacgatg gatccggtgg
     5761 ctcgtaaaat gctacaggtc aatattaccg atgcgattgc ggcagataaa ctcttcagta
     5821 cgctgatggg cgatgaagtt gaaccacgcc gagatttcat tgaaactaac gctttgtatg
     5881 ctcagttaga tatttagtta aaaaatccgc atttgacatg cggatttttt attctcttaa
     5941 actagcattt taagcattcg ctaaaatcac cgcccgcttc ggagcagggt agccttcaat
     6001 ggttttgcta tgatcgtttg gatctaaaaa atccactaaa ctttcatttt ccaaccaatc
     6061 ggtttttcgc tgctcttcta gtgtagtgat tgcctcatca acacaacgca catttttaaa
     6121 gccgactttt tccagccaat taatgagtgc agcaacagaa ggaataaaat agatattttt
     6181 cattttcgca tagcgatcag ccggcactaa aacatcatta atatcgccat caatcaccag
     6241 cgtttctaac accaattcac cgcctctgac taattgggct ttgagttgag aaagatgatc
     6301 aagcggtgat ttgcgatgat aaagcacccc cattgaaaac acggtatcaa aagcagcaag
     6361 cggttgcatt tgctcaatac caagtggaat cagattagcc cgtctatcat tccctaagag
     6421 tttccgcact gcctcaaatt ggcacaggaa cagctcggtc gggtcaatac caactaccat
     6481 ttttgcccct tcgcctacca ttcgccacat atgataaccg ctaccgcagc cgacatctaa
     6541 aatggtgcgg tcttttaacg gtgcaagatg cggaagcaca cgatcccatt taaaatcgga
     6601 acgccattcg gtatcaatat gaatcccgtg tagatgataa gggcctttac gccacggcat
     6661 tagttgcttt aaatggtggg taatttgctt gacttccccc tcagataaag gcttgcttga
     6721 aatagactca accttgtctt ttagattgat acaagcggtc gaatttggta aaaaatctgc
     6781 aacttttgcc cacttggcat agtcagcgtg ggtggtcttt tcccattgtt tgagttgtaa
     6841 gggtaaggtt tctaaccaag cagaaaggtc ggttgtggca atttgttgat aaaaaggacg
     6901 aaagtcaatc attttgaaat ttatgtctag gggagagacc tatgccctcc cgaaaggtag
     6961 taaatagaaa ggacaggcac agaacctacc cctacgaaaa atataaaatt atctcgcaat
     7021 cggatttact ttcgcttttt gcactttgcg ataagcgttc agtaatttct gatgtgcagt
     7081 catattttca agcgattcgt ccgatgcagt taaaccgtgg aacgggttac cgccttggat
     7141 tgcaccccaa gcagcttcaa ccgcttgttt accgtacatt ttctcaaaca ccatacgata
     7201 ttgttccgaa tcacgctctt catctaagaa caactcaatc gattggatta agcagcggta
     7261 ataattgtta cgttctgctg agaatacgct tgcattcata ttcgctgtcc agtttgccca
     7321 gtctgaggct tgctctaagt tacctaaagc taaatgcagc atcgatttaa gctcaccgat
     7381 acgcaatgtt tgcattgcag agcctttctc tgccaccacg ccaataaatt cacgcacacg
     7441 ggttaaatca tcaatgcttt gctcatctaa ttcatcaagc agttcttggt aagtttcagc
     7501 atcgtgatgg aaatgtggca aatctaacaa gatttcacgc caatccatac ccatattgtt
     7561 attggcatag accaaatcat cgcttggata gatattcgac atacccggtg caagaatacg
     7621 gcaagcgtac acacctaaat gctcataatc cataatatac acaggctgat tatgcttgtt
     7681 gaaaatcgcc atcatattat taaattcttg ctccgttgtg ccggagaagt cccaatgcac
     7741 gaacggataa tccgcatcac gtttgaaaag atcccacgaa attagaccgc ttgaatcaat
     7801 aaagtgtgtc tcaaggttcg catgatctgc tacatcttca ttattaaatg aaggtggggc
     7861 aaacacatct aaatccttta agctacggcc ttgtaataac tcggttacgg tacgttcaaa
     7921 cgccacttgg aaattcgggt gtgcaccaaa agaggcaaaa caagtaccgt tatttgggtt
     7981 taacaagatc acacaaataa ctggaaattc tccgcctaat gaagcgtcat agcataaaat
     8041 cgggaagtct tcttgctcta gtttctcgat agaggctttg attgtcggat aaccgtcaat
     8101 cacactttgc ggaatttccg gcaagctgat tgcctcagta ataatacggt ttttgacaaa
     8161 acgctcgaac acttcggata agccctgcac tcgagcttca ttttttgtgt tgcctgccga
     8221 cataccgttt gaaacaaaca ggttgccgat aatgctttgc ggaatgtaaa ccgtttcatt
     8281 gtcagattgg cgaacgtaag gtagggtaac aattccacga tcataatttc ctgattgtaa
     8341 atcaaccaat aattccggcg tgatttcacc attcggatca aaatattccc ataaaaactc
     8401 gtccatcatc tccattggtg gaatggcttc atcatcaatc ggaaaccatt tttcggttgg
     8461 ataatgcaca aattcactat tagcaatctc ttgacctaaa taaaaatccg cccagaaata
     8521 gttggtagat aaacgctcaa aatactcacc taatgcagag gcaagagcgg cttttttgct
     8581 tgctccctta ccgttagaaa aacattgcgg acagtctgca tcacgaatat gcaccgacca
     8641 cacattcgga acaggattta accaagaggc ttcttcaata ttaaaaccta aggtttttaa
     8701 tttatgctga aaggtcgcaa tgctgtcttc aagtgcagca tctttaccgg taataaaagt
     8761 ttgttctgac atgataatac ctttaacttg tcgtaaaaat ggcaacattc tagcaaaaat
     8821 ccccatagat aagtaaattt tttgtgaaat ttctgctgaa agaacagatt tcaaaactta
     8881 gaaaaaatga ttacaagcgg tcaaatttta cttgaatttt gcaagtgaaa tttgtgtttg
     8941 atttagatta agaaaatatt atctaggata tatacagaat aaaaggttag aggtagtatt
     9001 gcttgtgtta ggaaggaaat attgaaggta taaaaatgga agaacatact attcagtctt
     9061 tttatgccca ttcggggaag ctttcagatc attcagattg gcaaacttta ctcagccacg
     9121 ccaataatgt tggcttgctt gccgccgaat ttgctgcgcc gtttgcttca caagaaattg
     9181 ctcgctgcac ggggctattg cacgatttag gcaaatatag tgaacgttac caaaagcgtt
     9241 tacatggcgg agaacgggta aatcactcta ctgctggtgc aaaaattgca gtggaacgtt
     9301 gggggccttt gggcaaaatg atggcgtttt gtatcgcagg ccaccacgct gggttagcaa
     9361 atggttctgg agaagggaaa aatcgttcta cacttacaca acgtttgcaa gagcaatttg
     9421 gctatggtca taaagatcta ccggtacttg acgctatttg gcagcaagaa cttaatttgc
     9481 ctgaaaaatt gcccttaccg ccgttaaagc cttctaaaaa cgaacctttc ttttcttacg
     9541 ccttttttat ccgaatgctc tattcttgcc ttgtcgatgc cgactttctt gatacagaag
     9601 ctttttatgc caatctcgaa aaaagaccgc ttgaacgagg aaattacccc aatttaaccg
     9661 cactccatca gcaatttaat caatttattg cacagtttag ggagcgaatt gccactcaaa
     9721 cgcctaatac gcaggaagca caacgtaaag cggaagtaaa ccgcttgcgg agtgaaattt
     9781 tggattatgc cgtatctcaa gcaaaacagg aaacaggtct gttttctctg actgtgccaa
     9841 cgggcggtgg taaaaccttt acttcaatgg cgtttgccct tgagcatgct aaacagtatg
     9901 gtttatgccg cattatttat gttattccgt ttaccagcat tattgaacaa aatgctgcgg
     9961 aatttcgtaa agcttttggc gaattaggaa cagaggcggt attggaacat cacagcactt
    10021 ttgatcacga tagcctacct gataaatcaa gccgagataa gctgaaattg gcatcagaaa
    10081 attgggatac tcctgttgtg gttacaactg cagtgcaatt ctttgaaagt ttgtttgccg
    10141 accgttcttc acgctgtcgc aaattgcata atatcgtcgg tagcgtgatt attttggacg
    10201 aagcccaaat gctaccgttg aatttattac gcccaattat ggctgcgatt gatgaattag
    10261 ctcgcaatta tcaatgttcg gtagtgcttt gcacagcgac acaacccgct attcatcaag
    10321 cgaacggttt ttataaagga tttgaaaatg tgcgagaaat tgcccctaat ccaaccgcac
    10381 tttttgaaaa attgaaacgt actacggtaa agcatatcgg tattcaaaca gatgtggagt
    10441 tgcaaagcaa actcgcagat aacccacaaa tgctgataat cgtgaataac cgccgtcacg
    10501 cccgagcgtt atatgattca gcgaaacagt tagagggagc ttatcacctc accacgctaa
    10561 tgtgtgctaa acaccgctca caaacgctga ctgaaattcg tcttcgccta aaacaaaacc
    10621 taccttgccg agtgattgcc acttctttaa ttgaagccgg tgttgatgtc gatttcccac
    10681 tggttatgcg agctgaagca ggactagatt cagtggctca agcagcaggg cgttgcaacc
    10741 gagaggggaa acgtttatct gtagaaagca atgtttgggt tttccaacct gaagaacagt
    10801 ggaaagcacc accagagcta ggcttacttt ctggctgtat gcgttcaacg gttcaggttc
    10861 acgcagatga tctacttaat ccgaaagcaa tcaatcatta tttccaagcg gtttatgagg
    10921 ctaaaggaaa agagctggat aagccaaata ttttaaaggc gtgtcacgac gctgggcaaa
    10981 gccttaattt cccattccaa aaaatagctg aagatttccg aatgatcaca agccatttaa
    11041 ttccggtgat tatccctttc gaccaagaag ccgaaaacct tattgaccgt ttacgctatg
    11101 cggatcaagt aggcggtatt ttaagaaaac tccagcctta cactgtgcaa gtaccggaaa
    11161 aagcattagc cgaactctat aacgctggca gagttgaaac cattaatgaa accaacttcg
    11221 gcaaacagtt ttactgctta attggaatgg atttgtatga tgaagtggcg gggttgagtt
    11281 gggagaatgt ggattttctt gagtcggaga aattggtttt atagatgaat gtttatttta
    11341 acttctttat aagtttaatt ttgcatagat atactttaat ataccaaata gcctatgacg
    11401 tctcgtagta aacagctagt ttgtaagaat agatatttgg aagggaaacg taaaatgaga
    11461 gaaccattat tagatgaaga tgaattaaaa aaatggttgc aaactatttt tactgacaat
    11521 ttggtcatta ttgtcggttc gggtttgtcc tgtgccgaag gtttgccggg aatgggagca
    11581 ttagctgata gattaaaaga acgaatgcct gaatgtcttg atgatataga taaggtaaca
    11641 tggaatacca tttctgattg tctggattct gaaggcttgg aaggtgcatt gttgaagcat
    11701 caagcaaatg agacgataga agccgctatt attaaaataa cagccgagta tgtactctcc
    11761 gaagagcaaa aagcgataaa caaatgtatt gctgagaatc agaagctcaa attttcttat
    11821 ttgcttcccc atatttcagc ttcaaatcct aaaattgccc gtgtaattac tactaattat
    11881 gatagattga ttgagtttgc ggcagagtat gaaaattggg gaatagattc aatgatggtc
    11941 ggtcgttatt ggggaaaaca taatcctgat ttgagtagga aattgcagat aagagacatt
    12001 agagtaaaag gtaaatgtcc aaaattg
//
LOCUS       DANMBQ010000078        11832 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.078, whole genome shotgun sequence.
ACCESSION   DANMBQ010000078 DANMBQ010000000
VERSION     DANMBQ010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11832)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11832)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11832
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.078"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..270)
                     /locus_tag="PXE92_001718"
     CDS             complement(<1..270)
                     /locus_tag="PXE92_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5760941.1"
                     /translation="MAFNQYVFSDIVELISEKIKIKDLKKENYISTDNMLPNFGGITL
                     AENLPNSASCNRFAKKDILFSNIRTYFKKVWLAEFSGGCSPDVLVM"
     gene            complement(260..1999)
                     /locus_tag="PXE92_001719"
     CDS             complement(260..1999)
                     /locus_tag="PXE92_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005824196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HDL5760942.1"
                     /translation="MDTSKRNYYAKQHSTAQHSTAQHSTAQHSTAQRDLNADTSQAFL
                     NELDQTLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTDFQAKLKTQLTTPESEL
                     YLDPALFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWG
                     DKFKGVSRLIDDAFEAIERENPKLKGVLQRIAGFGVPDEMLTGLIDLFSRTNFTQPMH
                     NGEPVHLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEMLEPYSGRIYD
                     PAMGSGGFFVQADRFIQAHAGNRNAISVYGQESNSTTRKLAVMNMAIRGIPFDFGDKP
                     EDTLLNPLHIDKKMDVVMANPPFNQKEWWNESLANDPRWAYGTPPQGNANFAWLQHMI
                     YHLSPKGKMALLLANGSMSSQTSGEGDIRKNIVQADLVEAMIALPNQLFTNTQIPACI
                     WIINKAKARKGEVLFINATQIGYLKDRVLRDFTADDIAKISDTYHNWQKQNGYENIPA
                     FCYCATLDEIAKNDFVLTAGRYVGAVQEENDGVPFAEKMQELTALLNEQFKQGRELEQ
                     QIAENLKGLGYGI"
     gene            2152..2529
                     /locus_tag="PXE92_001720"
     CDS             2152..2529
                     /locus_tag="PXE92_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HDL5760943.1"
                     /translation="MEYQFTHSIHGVVAKCSMDHEAFARWLNAEITENPSQLAPIFAE
                     IEKCRAAFPNHYECVFEGREYSLYFDYDEVMAKANNLDAAFDDEEMEEGFQFYNEESI
                     AFCGLDDFEKFLKAYQHFVQTYH"
     gene            2618..3205
                     /gene="yihI"
                     /locus_tag="PXE92_001721"
     CDS             2618..3205
                     /gene="yihI"
                     /locus_tag="PXE92_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HDL5760944.1"
                     /translation="MSRTKKTRRITDIMPARKTDKPKQPMPKLGGGKNRKLTRYELDA
                     QAREEKRKRKHKGLPTGSRNADPAEQKKAVVKEVKDPRIGSRKKVPLMVEFVNQPEKG
                     RTIKAVPVEPIKPTLSPEQELEQLENNECLNQLLDDLEAGKTLSAEDQKFMNECLDRI
                     DELMTELGIEYEDEEGDNGDALLRQFETMDINKFR"
     gene            3219..3686
                     /locus_tag="PXE92_001722"
     CDS             3219..3686
                     /locus_tag="PXE92_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2489 domain-containing protein"
                     /protein_id="HDL5760945.1"
                     /translation="MLRIFLMVLAALILISLGGYALHLMLKVRAQKKHEQALIEQAKQ
                     AQKDRYIRILDSIEVIARAMISEQCDFSEGVLRLKPLLDVLGRKLSDYTAMWALYGVV
                     ENMPILDERKNLKRNERMKLDLEREAKEAELESDIKNECYQLLKDIEEMRKAI"
     gene            3686..5053
                     /gene="hemN"
                     /locus_tag="PXE92_001723"
     CDS             3686..5053
                     /gene="hemN"
                     /locus_tag="PXE92_001723"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDL5760946.1"
                     /translation="MSEIIWDLALIQKYNHSGPRYTSYPTALEFNENYTNEDFIRAAA
                     RYPERPLSLYVHIPFCHKLCYFCGCNKVITRHRHKVEIYLDYLEREIKTRAPLFQNRL
                     VTQIHWGGGTPTYLDEDQSARLMQMLRANFDVSDDAEISIEMDPREIELSMLDHLRAI
                     GFNRLSMGIQDFDKEVQRLVNREQDEEFIFALMKRAKELGFVSTNVDLIYGLPKQNVE
                     SFMYTLKRVVELNPDRMSVFNYAHLPSRFAAQVKIKEELLPAPETKLTILQNSIEFLG
                     KNGYKFIGMDHFAKPDDELAIAQEKGILHRNFQGYTTQEECDLLGMGVSAISLLGDTY
                     AQNRKELQQYYADVETNGIALHKGIALTQDDCIRRDVIKALICNFKLDFATIEKQYGI
                     DFKRYFAEDLAFLAPLAEDELLTMNDDSIVVSPRGRLLIRNICLCFDVYSRQLARRQQ
                     FSRII"
     gene            5127..7460
                     /gene="lptD"
                     /locus_tag="PXE92_001724"
     CDS             5127..7460
                     /gene="lptD"
                     /locus_tag="PXE92_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HDL5760947.1"
                     /translation="MKQRYSLLSLAVMAACYSNSAAADLKQQCLLGVPHFQGEVVEGD
                     QLRMPVTIEADSAVINQPRDATYTGDVTIKQGNRSIWADQVRVEQDGENARMAYLQGN
                     FNYQDNLIQATGSDATINLLSKDANLANANYQLIGRQGRGTAESGEFGNSKHTLKNAS
                     FTSCLPNDNSWQIEANEMIQHVDEEYAEMWHARFKVLGMPVFYSPYLQFPIGDRRRSG
                     LLIPSFERSSKNGWTYSQPFYWNIAPNMDSTITPTYYSRRGWQISPEFRYLTKIGQGL
                     VATEYMAKDRLSEYQPGNDDRKRYLFHWRHAMSFLTDWRFSVDYTKVSDRRYFSDFDS
                     DYGSSTDGYATQNFKLGYYQPNYNISISGKKFQTFDELDIGPYRVLPQIDFNYYKNDL
                     IKGGDFKFFAQAARFENDSKLMPKAWRFHAEPTLNFPLANRYGSLNLETKLYATYYQQ
                     TKGSESTEEIKKSVSRVLPQIKLDFKTVLESDKQLFSGYTQTLEPRVQYIYRPYKDQS
                     DIGSKAHRSVSLGYDSALLQNDYFSLFNDRRYSGLDRISSANLVTAGGTTRFFKEATG
                     EEVFNFSLGQTYYISPSKIDDTSDNSTKGHTTSWAAESNWKFHKNWNWHGSYQYDTRL
                     NQTALANMSLQYKPQSDKLIQLNYRYASKDYINQNLNTNKYGQSIKQVGGVLGWELTD
                     KVSVMTSYYHDLALKKPVEGQISLNYNTCCWAANVYVARRLVSTPVGSSDTINDFYYD
                     NKFGINFELRFGTNYSNGVTRMLKRGIIPYTEPYSIN"
     gene            complement(7602..10241)
                     /gene="ppc"
                     /locus_tag="PXE92_001725"
     CDS             complement(7602..10241)
                     /gene="ppc"
                     /locus_tag="PXE92_001725"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HDL5760948.1"
                     /translation="MNQQYSTIQHNIHMLGEFLGETIRDAQGNYILELIESIRVLSRN
                     SRAGDENAREQLLDKLANISNDDVLPVARAFSHFLNLTNIAEQHQTVSRHHIDESLGS
                     RSLDSLFLRLKSQNIPVEKVIKTVESLMIDLVLTAHPTEVTRRSLGHKHVEINKCLNL
                     LEHDDLTEAESYKIKRRLMQLIALAWHTNEIRTQRPTPVDEAKGGMAVIENSLWKAVP
                     EFCRQLNFYLEKHFGVQYPVNLAPVRFSSWMGGDRDGNPFVTAETTRRVLRMNRWKAT
                     ELFLQDIKNLAEELSITQCTPAFRAKYGNHLEPYRVLLKVLRQKLINTEIYYAELLEG
                     KISTIDESDILTSDQQLWEPLFDCYESLQACGMRIIANGALLDCLRRINCFGLGLSRL
                     DIRQESTRHEMAIAEITRYIGLGDYAHWTEDDKQAFLVRELSSRRPLIPTNWTPSPET
                     KEVLDTCKIVAEQPEGVISAYVISMAREASDVLSVHLLLKEAGCKFTIPVAPLFETLG
                     DLDHSEKVMTDLFNIGWYRGVINNYQMIMIGYSDSAKDAGMFAAGWAQYRAQEALVNL
                     CEKYNIELTLFHGRGGTIGRGGAPAHAALLSQPPRSLKNGLRVTEQGEMIRFKLGLPA
                     VAVESLELYASAILEANIFPPPEPKQQWRDVLAKASDISCQIYRDMVRGELDFVPYFR
                     SATPEQELSRLPLGSRPAKRNPKGGVESLRAIPWIFAWMQNRLMLPAWLGAGQALQQL
                     IDEGNETLLKEMCNEWPFFSTRIGMLEMVFSKADIWLAEYYDQRLVEPKLHRLGNMLR
                     TQLQADLKTVLALAHDGQLMADLPWIAESIALRNIYTDPLNLLQVELLDRIRKQGENA
                     DPVLEQALMITITGIAAGMRNTG"
     gene            10366..11334
                     /locus_tag="PXE92_001726"
     CDS             10366..11334
                     /locus_tag="PXE92_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS1 family transporter"
                     /protein_id="HDL5760949.1"
                     /translation="MCLKLLFGFDNLPVVYVLFTVIQVGLSINGFKGIKWLENVSCVF
                     LIGILAYMLYVVNTKFSVEIGERFANIEGTWGMPFWAATTAFLGIYSTMILNASDYSR
                     HVKKGTTPTATGVIYVLSILPVTLFMGLIGLLVTAATGNSDPIEVFATAMDNKFLTVI
                     TLLFIAFAQVTTNVLNNIVPPSYILMDSFKMKWSHATILVGILSICVMPWKLVTAESA
                     DGLSLFIKIYSAFLGPIFAVMVVDYYILRKRTLNVNDLYNKEGIFKGINWAAIIAIAI
                     GSFCSLIVVDLSWYVSLIPSGLSYYILMRVLKSSEAFRKGTVLEHQ"
     gene            complement(11599..>11832)
                     /locus_tag="PXE92_001727"
     CDS             complement(11599..>11832)
                     /locus_tag="PXE92_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760950.1"
                     /translation="QDDGSLNAKYVVGTGDDTDGEVTNFVIITSEYKYIDAQSAKAIT
                     DAPLTKEDIGKTPTQIMLGRIYKYLKETGQIVV"
BASE COUNT         3435 a         2280 c         2611 g         3506 t
ORIGIN      
        1 cattaccaga acatcaggag aacaaccacc tgaaaattca gcaagccaaa cttttttaaa
       61 gtaggttctt atattggaaa acaaaatgtc ttttttggca aacctattgc aagaagctga
      121 atttggaagg ttttcagcaa gtgttattcc accaaaatta ggcagcatat tatctgtcga
      181 aatatagttt tcttttttta agtctttgat ttttattttt tcggatatta attcaacaat
      241 atctgaaaat acatactgat taaatgccat atcccaaccc ctttaaattc tctgcgattt
      301 gctgttccaa ttcccgccct tgtttaaatt gttcattcaa taaagcggtc aattcctgca
      361 ttttttctgc aaacggcacg ccgtcatttt cttcttgtac cgcaccgaca tatcgccctg
      421 cggtcagcac aaaatcgttt ttggcgattt cgtccagcgt ggcacaataa caaaacgcag
      481 ggatattttc gtagccgttc tgtttttgcc agttgtggta ggtgtcgctg attttggcga
      541 tgtcatcagc ggtaaaatca cgcaagacgc ggtccttcag gtagcctatt tgggtggcgt
      601 tgataaacag cacttcacct tttctggctt tggctttatt gataatccaa atgcaggcag
      661 ggatttgggt gttggtgaat agctgattgg gcagggcaat catcgcttcg acaaggtcag
      721 cttgcacgat gtttttgcga atgtcgcctt cgcctgaagt ttggctgctc attgagccgt
      781 tggcgagcag gagtgccatt ttgcctttgg gggagaggtg gtaaatcata tgttgcaacc
      841 acgcaaagtt ggcgttgcct tgcggcggtg tgccgtatgc ccagcgtgga tcgtttgcta
      901 ggctttcatt ccaccactct ttttggttaa agggcggatt tgccatcaca acatccattt
      961 ttttgtcgat gtgcaaaggg tttagtaggg tatcttcggg cttgtcgcca aagtcaaagg
     1021 gaataccacg aatcgccata ttcatcaccg ccagtttgcg agtggtggag ttggattctt
     1081 gcccataaac ggaaatggcg ttgcggttgc ctgcgtgagc ctgaataaag cggtcagctt
     1141 gcacaaaaaa gccgccgctg cccatagctg ggtcgtaaat ccgccctgaa tagggttcga
     1201 gcatttcaac aatcagggta acgatggatt ttggcgtgaa gtattgaccg ccttttttgc
     1261 cttcggcaag ggcaaattgc ccaagaaagt attcatagac gtgccctaaa atgtctttgg
     1321 cttgcagatg cacaggttcg ccattgtgca taggctgggt gaaattggtg cgtgagaaca
     1381 ggtcaattaa gcctgtgagc atttcatcag gcacgccaaa gccggcaatg cgttggagta
     1441 cgcctttgag tttggggttt tcccgttcga tggcttcaaa ggcatcatca atcaagcggc
     1501 tgacaccttt aaatttgtct ccccaaggca attcatcgcc aagattgagt ttgcttaatg
     1561 atttgatgtt gtcccagcgg gcttgctccg gcacccaaaa gatgttttca gcggcgtagt
     1621 aatctctctg ttccaactct tcggcaagaa tttggctaaa ttcttgttcg tcaaatagtg
     1681 cagggtcaag atagagttcg ctttcggggg tggtaagctg ggtttttagc ttggcttgga
     1741 aatcggtaaa gctgtcggag atgtatttta ggaagataaa gccaagaacg atgtgtttgt
     1801 agttggcggc atcgaggttt ttacgcagtt tgtcggcggc agtccagagg gtttggtcga
     1861 gttcgtttaa aaaggcttga cttgtgtcag cgttgagatc acgctgtgct gtgctgtgct
     1921 gtgctgtgct gtgctgtgct gtgctgtgct gtgctgtgct gtgctgtttg gcatagtagt
     1981 tcctttttga tgtatcaata ctaaaaataa cctgtattat tctagcagat ttctgggtaa
     2041 tcgaggagtt gataacattt aaaaattagc gttttgcaaa attttccaaa aaaagaccgc
     2101 ttgttaggct ataatagcca accaaacaga ccaattcaaa ggagaatcgg tatggaatat
     2161 caatttaccc atagtattca cggggtggtg gcaaaatgtt cgatggatca cgaggcgttt
     2221 gctcgttggt tgaatgccga aataacggaa aatcctagcc agttagcccc tattttcgct
     2281 gaaatagaga agtgtcgagc cgcatttccg aatcattatg aatgtgtgtt tgaagggcgg
     2341 gagtatagtc tctattttga ttatgatgaa gtgatggcaa aagcaaacaa tttagatgct
     2401 gcttttgatg atgaggaaat ggaagaaggc tttcaatttt acaatgaaga gagcatcgca
     2461 ttttgtggct tagatgactt tgagaaattt ttgaaagcct accaacattt tgtgcaaact
     2521 tatcattgat tgaaatgatt aattgaaacc aaagctatta agggaatcta attccttgta
     2581 gaatagccgt ttatagcaat tttaagatat taaatttatg agtcgtacta aaaaaacacg
     2641 tcgtattacc gacattatgc cggcaagaaa gaccgataaa cctaaacagc ccatgcctaa
     2701 attaggtggg gggaaaaatc gcaaactgac ccgttatgag ttagatgctc aagcccgtga
     2761 ggaaaaacgt aagcgtaaac ataaaggctt gccgacaggc tcacgcaatg ctgatccggc
     2821 agagcagaaa aaagcagtgg tgaaagaggt gaaagatccg cgtatcggta gccgtaaaaa
     2881 agtgccgtta atggtggaat ttgtgaacca gccggaaaaa gggcggacga ttaaggctgt
     2941 gccggttgag ccaatcaaac caacgctttc accggaacaa gagctggagc agttagaaaa
     3001 taacgaatgt ttaaatcagt tgttagatga tttggaggcg ggcaaaacct tatccgcaga
     3061 agatcagaaa tttatgaatg aatgtttaga tcgcattgat gaattaatga ctgagcttgg
     3121 catcgaatat gaagatgaag agggcgataa tggcgatgcg ttattacgcc aatttgaaac
     3181 gatggatatt aataaattcc gctaggtagc cgattatgat gctaagaata ttcctgatgg
     3241 tgcttgccgc tttgatttta atttcgctgg gcgggtatgc actgcactta atgctgaaag
     3301 tgcgagctca gaaaaagcac gaacaagcac tgattgaaca ggcaaagcaa gcacaaaaag
     3361 atcgttatat tcggatttta gacagcattg aagttattgc tcgggcaatg atttcagaac
     3421 agtgcgattt ttcggaaggc gttttacgtt taaaaccgct attagatgtt ctcggcagaa
     3481 aattaagcga ctatacggcg atgtgggcgt tgtatggcgt ggtagaaaat atgccgattt
     3541 tagatgaacg caaaaattta aaacgtaacg aaagaatgaa gttggattta gagcgggaag
     3601 caaaagaagc ggagcttgaa tcagacatca aaaatgagtg ttaccaatta ttaaaagata
     3661 ttgaagaaat gagaaaggca atctaatgtc agaaattatt tgggatttag cccttattca
     3721 aaaatataac cattcagggc ctcgttatac ctcttaccca acagcgttgg agtttaacga
     3781 aaattacacc aatgaagatt ttattcgtgc tgcagctcgt taccctgagc gtccgctttc
     3841 gctttatgtg catattccgt tttgccataa actgtgctat ttctgtggct gtaataaagt
     3901 gattactcgt catcgccata aagttgaaat ttatttagat tatttagagc gtgaaattaa
     3961 aactcgcgca cctctgtttc aaaatcgttt agtgacccaa atacactggg gtggcggtac
     4021 gccgacttat ttagacgaag atcaatcggc acgtttaatg caaatgctac gagccaattt
     4081 tgatgtgagc gatgatgcgg aaatcagcat tgaaatggat ccgcgtgaaa tcgaattaag
     4141 tatgttggat cacctgcgtg ctatcggttt taaccgtctg agtatgggta ttcaggattt
     4201 cgataaagaa gtgcaacgtt tggtgaatcg tgagcaagat gaagagttta tttttgcctt
     4261 gatgaaacgg gcaaaagaac ttggttttgt ttcaactaat gtggatttga tttacggctt
     4321 gccaaaacag aatgtggaaa gctttatgta caccttaaaa cgtgtggtag agctaaaccc
     4381 tgatcgtatg agcgtattta actatgccca cttgccaagc cgttttgctg cacaagtgaa
     4441 aattaaagaa gagttgttgc cggctccgga aaccaaattg acgattttgc aaaattccat
     4501 cgaattttta ggcaaaaacg gttataagtt tatcggtatg gatcactttg ctaaacctga
     4561 tgatgagtta gctattgcac aagaaaaagg cattttacac cgtaacttcc aaggctatac
     4621 cactcaagaa gagtgtgatt tattgggaat gggcgtatcg gcaatcagct tactcggcga
     4681 tacttacgcc caaaaccgca aagaattaca acaatactat gctgatgttg aaaccaacgg
     4741 tattgcgttg cataaaggca ttgcgttaac ccaagatgat tgcattcgcc gtgatgtgat
     4801 aaaagccttg atttgtaatt tcaaattaga ttttgccacc attgaaaagc aatatggtat
     4861 tgattttaaa cgttattttg ccgaagattt agctttctta gcgccgttgg cggaagatga
     4921 attattaacg atgaatgacg acagcattgt ggtttcccca cgagggcgtt tattgatccg
     4981 taatatttgc ttatgctttg atgtctattc aagacaatta gcgagaagac agcagttttc
     5041 ccgtattatt taatgagcaa gcggtcgatt ttggtaaaaa ttttgcaaaa acagaccgct
     5101 tgttcccggc ttataaagga aaaatgatga aacagcgtta tagcttactt tctcttgctg
     5161 tgatggcagc ttgttatagc aacagtgccg cagctgattt aaagcaacaa tgtttacttg
     5221 gcgtgccgca ttttcagggc gaagtggtag agggcgatca acttagaatg cctgttacca
     5281 ttgaggctga cagtgcggtc attaaccagc ctcgtgatgc cacctacacc ggtgatgtaa
     5341 cgatcaaaca aggtaaccgt tcgatttggg cggatcaggt gcgggttgag caagatggcg
     5401 aaaatgcccg aatggcgtat ttgcagggta attttaacta ccaagataat ttgattcagg
     5461 caaccggttc agatgcgacc atcaatctgc tttccaaaga tgcgaattta gctaatgcta
     5521 attaccaatt aattggcaga caagggcgtg gcacggcaga atccggtgaa ttcggcaaca
     5581 gcaaacacac gctgaaaaat gccagtttca cttcgtgctt accgaatgat aattcgtggc
     5641 aaattgaagc gaatgaaatg attcagcacg ttgatgaaga atatgcggaa atgtggcacg
     5701 cccgttttaa agtgctggga atgccggtat tttattcgcc ttacttacaa tttccgattg
     5761 gcgaccgccg ccgtagtggg ttattaattc caagttttga gcgttcaagc aaaaacggct
     5821 ggacatattc gcaaccgttt tattggaata tcgcaccgaa tatggactcg accatcactc
     5881 caacttacta ttcacgccgt ggttggcaaa tcagcccgga atttcgttat ttaacgaaaa
     5941 tcgggcaagg cttagtggca accgaatata tggcgaaaga tcgtttaagc gagtaccaac
     6001 cgggaaatga tgatcgtaaa cgctatttat tccactggcg tcacgcaatg agttttttaa
     6061 ccgattggcg tttctcggtc gattacacca aagtgagcga cagacgttat ttctctgatt
     6121 ttgattcgga ttatggtagc agtactgatg gctatgcgac gcagaatttt aaattaggct
     6181 actatcagcc gaattataat atctcaattt caggtaaaaa attccaaacc ttcgatgagt
     6241 tggatatcgg gccttatcgc gttctgccac aaattgattt taactattat aaaaacgatc
     6301 taattaaagg cggagatttc aaattctttg cccaagcagc ccgttttgaa aatgatagta
     6361 aattaatgcc aaaagcgtgg cgtttccacg ctgagccaac actgaatttc ccattagcga
     6421 accgctatgg tagcttaaat ttagaaacca agctctatgc aacctactat caacaaacga
     6481 aaggtagtga gagtacggaa gaaattaaga aaagtgtaag tcgtgtactg ccacagatta
     6541 agctcgattt taaaaccgtg ttggaatccg ataaacagct tttctctggc tatactcaaa
     6601 cgcttgagcc tcgggtgcaa tatatttatc gcccatataa ggatcaaagc gatattggct
     6661 cgaaagcaca tcgaagtgtg agcttaggct atgactctgc attattgcaa aacgactatt
     6721 tctcactgtt taatgacaga cgttatagcg gtttagatcg tatttcgtca gcaaatttag
     6781 tcaccgcagg tggcacaacc cgtttcttta aagaggcaac cggtgaagag gtgtttaatt
     6841 tcagcttagg acaaacttat tatataagcc cgtctaaaat tgatgatacc tcagataaca
     6901 gcactaaagg tcatacgact tcatgggcag cggaatctaa ctggaaattc cataagaatt
     6961 ggaattggca tggtagctat caatatgata ctcgtttaaa ccaaacggcg ttagcgaata
     7021 tgtcattgca atacaaacca cagtcagaca aattgattca gcttaattac cgctatgcaa
     7081 gtaaagatta catcaatcaa aacttgaaca cgaataagta tgggcaatcc attaaacaag
     7141 tgggcggtgt gctaggttgg gaattaaccg ataaagtgtc ggtaatgacc agttattacc
     7201 acgaccttgc attgaaaaaa ccggtggaag ggcaaatttc gcttaactac aacacttgct
     7261 gttgggcggc aaatgtgtat gtggctcgtc gcttagtttc aacgccggta ggttcatctg
     7321 atacgatcaa tgatttctac tatgacaata aattcggcat taactttgag ctacgctttg
     7381 gcacaaacta cagcaatggt gtaacccgta tgctaaaacg aggtattatt ccttacaccg
     7441 agccgtatag cattaattaa caaagtaaaa acaaataagt aaaaatacaa atcggggcga
     7501 aaaatatttg ccccgatttt tttatatttg gctgataagc ggttaaattc tgttggaatt
     7561 ttgcaaatct tccgctaaat tcaaccgctt gccatcgaaa cttaacctgt atttcgcata
     7621 cctgcggcaa tacctgtgat ggtgatcatc aatgcttgct ctagtacagg atcagcattt
     7681 tcaccttgtt tgcgaatcct atctaacaat tctacctgaa gtagattgag cggatcggta
     7741 taaatattgc gtagtgcaat cgattctgcg atccaaggta aatcggccat taattgtcca
     7801 tcgtgagcca gtgcaagtac ggttttaaga tcagcctgta gttgcgtacg caacatattg
     7861 cctaaacggt gtagttttgg ctcgactagg cgttggtcgt aatattccgc cagccaaata
     7921 tcagctttac taaataccat ttccagcatt ccgatacggg tcgagaaaaa cggccattcg
     7981 ttacacattt cttttagtaa ggtttcatta ccttcatcaa tcaactgttg caatgcttgc
     8041 cctgcaccta accaagcagg tagcattaag cggttttgca tccaagcgaa aatccaagga
     8101 attgcacgca aactctccac tccgcctttt ggattacgtt ttgcagggcg tgagccaagc
     8161 ggcagacggg aaagttcttg ctctggtgta gcagagcgga aatacggtac gaagtctagc
     8221 tcgccacgca ccatatcacg gtaaatttgg caagaaatat cggaggcttt tgctagcaca
     8281 tctcgccatt gctgctttgg ctccggtggt gggaaaatat tcgcttctaa aatcgcactg
     8341 gcatagagtt ctaaactttc aactgccacg gcaggtaagc ctaatttaaa gcggatcatt
     8401 tctccttgtt cggtcactcg taagccattt ttgagtgagc gaggtggctg agaaagtaag
     8461 gctgcgtgag ccggtgcgcc accacgcccg atagtaccac cacgaccgtg gaataaggtt
     8521 aattcaatat tatatttttc acataaatta accagagctt cttgcgcccg atattgcgcc
     8581 cagccggcag caaacattcc ggcatctttg gcggaatcag agtagccgat cataatcatt
     8641 tggtaattgt tgatgacgcc acgataccag ccgatattaa ataaatcggt catcactttt
     8701 tcactatgat ctaaatcgcc tagcgtttca aataatgggg caaccggaat agtaaatttg
     8761 caccccgcct ctttgagtaa aaggtgaacc gagagtacat cagaggcctc tcttgccatt
     8821 gaaatgacat aggctgaaat gacaccttca ggttgctcgg caacaatttt acaagtgtct
     8881 aacacttctt tagtttcagg gcttggagtc cagttggttg gaatcaatgg gcggcgagaa
     8941 ctgagttcac gcactaagaa tgcctgttta tcatcttccg tccagtgagc ataatcgcct
     9001 aagccgatat agcgggtaat ttctgcaatc gccatttcgt ggcgggtact ttcttggcga
     9061 atatctaagc gtgataaacc taaaccaaaa cagtttatac gacgtaagca atctagtaat
     9121 gcaccatttg caataattcg cataccacag gcttgtaatg actcatagca atcaaaaagc
     9181 ggttcccaca attgctgatc tgaagttaaa atgtcacttt catcaatagt tgaaatttta
     9241 ccttccaata attccgcata gtaaatttcg gtattaatta atttctggcg taatactttt
     9301 agtaatacgc gatatggctc taaatggttg ccatatttag cacgaaatgc aggggtacac
     9361 tgtgtaatcg ataattcttc agcaagattt ttaatatctt gtaagaacaa ttccgtggct
     9421 ttccaacggt tcattcttaa tacacggcga gttgtttctg ccgtgacgaa cgggttaccg
     9481 tcacggtctc cgcccatcca agaagaaaaa cggacagggg ctaaatttac cggatattgc
     9541 acaccaaagt gtttttctaa atagaagtta agctgacggc aaaattccgg cacggctttc
     9601 cataaactat tttcaatgac tgccataccg cctttggctt catcaacagg ggttgggcgt
     9661 tgggttctga tttcattagt atgccaagca agggcaatca gttgcattaa acggcgcttg
     9721 attttatagc tttctgcctc agttaaatca tcatgttcca acaaattcaa acatttattg
     9781 atttcaacgt gtttatgccc cagcgaacgg cgggttactt ccgttgggtg agctgttagc
     9841 actaaatcaa tcattaggct ttccacggtt ttaatcactt tttcaacggg gatattttgt
     9901 gattttagac gaaggaacag agagtctaat gagcgactac caagtgattc atcaatatga
     9961 tggcgagaaa cagtttgatg ttgttcagca atatttgtta gatttagaaa atggctaaat
    10021 gcacgtgcaa cgggtaagac atcatcgtta gaaatattgg ctaatttatc taatagctgt
    10081 tcacgggcgt tttcatcgcc ggcacgagaa ttgcgagata acacacgaat gctttcgatg
    10141 agttctagaa tgtaatttcc ttgcgcatca cgaatcgttt ctcccaaaaa ttcacctaac
    10201 atatggatat tatgctgaat tgttgaatat tgctggttca taaaaaattc ctatggtaaa
    10261 cataaattaa attaggtcta aatatgccga aaatcgctga aaatagcaaa tagatttaat
    10321 ttaatttttg aattaaatga taaaacgcaa aaaatagctg tcaatatgtg tttaaaactg
    10381 ttgttcggtt ttgataactt gcctgttgtt tatgtgctat tcactgttat tcaagttggc
    10441 ttatccatta atggttttaa aggtattaaa tggttggaaa atgtttcttg tgtgttcctc
    10501 atcggtattc ttgcttatat gctttatgtt gtgaatacaa aattctctgt agaaataggc
    10561 gagcgctttg ccaatattga aggcacttgg ggaatgccat tctgggctgc aactacagca
    10621 ttcttgggta tttattcaac aatgatttta aatgcttccg attattctcg ccacgttaaa
    10681 aaaggaacaa ccccaacagc aacaggtgtg atttatgtat tatcaatcct ccctgtaacc
    10741 ttatttatgg gtttaatagg gttgttagtt acggcagcta caggcaatag tgacccaatt
    10801 gaagtatttg caactgcaat ggataataaa tttttaacag taataacgtt attattcatt
    10861 gcttttgcac aggttacgac aaacgtgttg aataatattg ttccgccatc ttacatttta
    10921 atggattcat ttaaaatgaa atggtcgcat gccaccattt tagtgggcat tctttctata
    10981 tgtgtaatgc cttggaaatt ggtaactgct gaatcagcag atggattatc tttgtttatt
    11041 aaaatttact cggcattctt aggccctatt tttgcggtaa tggtcgtcga ttactacatc
    11101 ttaagaaaac gtactttaaa cgtaaatgac ttatataata aagaaggtat tttcaaaggg
    11161 attaactggg cagcaattat tgcgattgct atcggttcgt tttgctcact gattgtggtg
    11221 gatctctctt ggtatgtcag tttaattcca tcaggcttga gctactatat tttgatgagg
    11281 gtgttaaaaa gttccgaagc tttccgtaaa gggacagtgc tagaacatca ataagatgac
    11341 aagcggtaaa atttattaaa aatatttcaa acttaagtga gcataaggct tattataaat
    11401 aaaacgttcc gaaaaaacat tgaatttcat taaaaaattc ctttatttat caaataaatg
    11461 cgatttgttt cggaacgttt tttaatgctt attttgcaac atacggatta tcaatggaaa
    11521 gcgttgctgt aaacattgtg cctcctagta caaaaaaacc gcttggtttc cctaagcggt
    11581 tctaatctat aagaactatt acactacaat ctgccccgtc tcttttaagt acttatagat
    11641 acgccctagc ataatctgcg ttggcgtttt gccaatatcc tcttttgtta gcggtgcatc
    11701 agtaatcgcc ttggcggact gtgcatcaat gtatttgtac tcacttgtga tgattacaaa
    11761 gtttgttact tctccatcgg tatcatcgcc tgtaccgacc acatatttag cattgagcga
    11821 gccgtcatct tg
//
LOCUS       DANMBQ010000079        11677 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.079, whole genome shotgun sequence.
ACCESSION   DANMBQ010000079 DANMBQ010000000
VERSION     DANMBQ010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11677
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.079"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            181..2073
                     /gene="mnmG"
                     /locus_tag="PXE92_001728"
     CDS             181..2073
                     /gene="mnmG"
                     /locus_tag="PXE92_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDL5760951.1"
                     /translation="MIYNQIYDVIVVGGGHAGTEAALAPARMGLKTLILTHNVDTLGQ
                     MSCNPAIGGIGKGHLVKEIDAMGGLMAKATDVAGIQFRTLNNSKGPAVRATRAQADRV
                     LYRNAVRTALENQPNLDIFQQEVVDILVENNRAVGAVTKMGLTFKARAVVLTAGTFLA
                     GKIHIGLDNYAGGRAGDPAATMLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQ
                     HGDEVLPVFSFMGDVSQHPRQIPCYITHTNDQTHDLIRNSLDRSPMYTGIIEGVGPRY
                     CPSIEDKVMRFADRNSHQIYLEPEGLNTIEVYPNGISTSLPFDVQMGIVNSMKGLENT
                     RIIKPGYAIEYDYFDPRDLKPTLETKAIDGLFFAGQINGTTGYEEAGAQGLLAGINAA
                     LQVQGKEAWYPTRDQAYTGVLVDDLCTLGTKEPYRVFTSRAEYRLLLREDNADIRLTP
                     KAHELGLIDEARWVRFNQKMEAIEQERARLKSTWAHLQMPNLDELNALLANPLAREAS
                     GEDLIRRPEMSYEKLTQIALFAPAIEDKQVAEQVEIAIKYQGYIEHQYNEIERHKRHE
                     NTLIPVEFDYDKVESLSNEVRAKLMQHRPVSIGQASRISGITPAAISILLVNLKKQGM
                     LKRGEL"
     gene            2168..2392
                     /locus_tag="PXE92_001729"
     CDS             2168..2392
                     /locus_tag="PXE92_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760952.1"
                     /translation="MIYLRKLGFSPFDHQMFAQPSWYFCNALVHTNYENLRQGVFVTK
                     AYLVMFLENLLFEKSHSLSNRALRINENND"
     gene            2405..3019
                     /gene="rsmG"
                     /locus_tag="PXE92_001730"
     CDS             2405..3019
                     /gene="rsmG"
                     /locus_tag="PXE92_001730"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDL5760953.1"
                     /translation="MLAKLNRLLAQAEINLTDQQKEQLVGFVRLLDKWNKAYNLTSVR
                     NPDEMLVKHILDSLVVSRHLQGETFIDVGTGPGLPGIPLAIANPDKQFVLLDSLGKRI
                     TFIKNALRELGIKNVTPVQSRVEEYTESQFDGVLSRAFASLNDMIDWCYHLPTENGKF
                     YALKGVYDEQEIIEIKQPIQLVEVIKLEVPELVGERHLVVLKKP"
     gene            3287..4735
                     /locus_tag="PXE92_001731"
     CDS             3287..4735
                     /locus_tag="PXE92_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5760954.1"
                     /translation="MNRVTNKADEFAKLSTFERIAYGSGDLAQNLVFGTVGGFLLTYL
                     TTVNGISAVAGATIFLIVKWGNVFWDPFVGAFIDKSKPSAQGKYRPYLLKFGIPLVVL
                     ASLLFLPLESVRGSVIYAFLSYFATAMVYSFVNIPYGSLSASLTRDTDEIAKLTTTRM
                     TMANIANLFVYTLFPLFVQLLAPHAELKNTGFFGIELYLGDYMSAAAGPAWFKVYAVY
                     MVIGFVALMLSYFGTKERIIPTAEETDKVKYSDLVNELKRNRPLQILGLFFLIGFTFM
                     FFGNTVWPFYLKYNIGHSEWIASVGLLGSIPGIFLVFLWPKLRRTIGKKNFFYLFLGI
                     FVLGQLCLWVWQFDSFKYSPTLGYIGRFLQQWGLTSATGFMWALVPEVVTFGEFKSKK
                     RVAGIINALMGLFFKIGLALGGIIPGYINAVYGFNGSLLAQTEEALFGINLSMIWAPI
                     ILAIIAGFVMSRYPLSDTDIDHINEKITAYSK"
     gene            4758..5804
                     /locus_tag="PXE92_001732"
     CDS             4758..5804
                     /locus_tag="PXE92_001732"
                     /inference="COORDINATES: protein motif:HMM:NF016497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HDL5760955.1"
                     /translation="MQIQNPVLPGFNPDPSIVRVGDTYYIATSTFEWFPGVRIHESKD
                     LVHWNLVKNVLDTTTLLDMRGNPSSGGIWAPDLSYAEGKFWLVYTDVKITDGAFKDMT
                     NYLTTAKEIQGPWSAPIKLNGIGFDASLFHDDDGRKYLVQQTWDHREYHHPFDGITLT
                     EFDVATMKLKPETQRTIFEGTEVKLVEGPHIYKINGEYYLFAAEGGTVFTHQEVVARS
                     KTLEAHSFQLAPNTPFITNFDTPNSYLQKQGHGSLVDTPSGEWYYASLTARPWNHATE
                     SATDPRGWSTLGREAAIQKVEFDQDGWPYIVGGHGGKTFVEAPKDAIFTEAPIDHSQH
                     DEFDSSTLDINWNT"
     gene            5807..6445
                     /locus_tag="PXE92_001733"
     CDS             5807..6445
                     /locus_tag="PXE92_001733"
                     /inference="COORDINATES: protein motif:HMM:NF036826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-xylosidase"
                     /protein_id="HDL5760956.1"
                     /translation="MPFSKEMGEVGNGVLKLIGRGSLANTHDLSLIARRWQAFYFDAE
                     TKVKFTPFSYQSMAGLTNYYNHSHWSWIFITKNDQGQQVIEVAENKGGLRNGQYTSYL
                     KDKAIVIPDGTEYVWFKTKVRKETYRYEYSFDGKQWHTIPVELDAAVLSDDYVLRSYG
                     GFFTGAFVGLAAVDYSSYESTAEFSYFDYKELGDKQLTDGSFSWEKSESCFG"
     gene            6464..7444
                     /locus_tag="PXE92_001734"
     CDS             6464..7444
                     /locus_tag="PXE92_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDL5760957.1"
                     /translation="MKQRRFGKTNKMVSEIGLGTWQLGTKWGEPFNHQEAMAILETAY
                     EQGINFIDTADVYNNGQSEKAIGDILKKYPDFFYVVTKCGRALNPHTAEMYTPQAIEK
                     FVDGSLSHLGTEKLDMILLHCPPTLVYRNDEIFTKLEQLKAGGKLIDYGVSIETAEEG
                     LLAMEYDIAAMEVIFNMFRLKPLEQLFPTAQQKNVGIIARVLLASGLLTGRYNACTQF
                     GKDDHRTFNRNGEAFDKGETFSGVDYQLGLQAVEELKALFGTEDLIPYALRWVLMNEA
                     VSTVIPGASKVSQVITNAAVDNFPPLTENEMQKVEDIYNRLIRPSVHHLW"
     gene            complement(7506..8846)
                     /locus_tag="PXE92_001735"
     CDS             complement(7506..8846)
                     /locus_tag="PXE92_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5760958.1"
                     /translation="MFSFLKASPPAEQKVEASRVDAEYRKLRWQVFAGVFIGYAAYYL
                     IRKNFSLAMPYLIDEYGFTKADLGTVGVALSLAYGFSKFIMGNVSDRSNPKYFITIGL
                     LGSAIVSLVFGLVPGVLSSIPIMIILAALNGWFQGMGYPPGAKTMTNWFSTSERGVWW
                     SWWNVSHNLGGGLIGPLAILGLSIFGVWQSLFYLPALIAIVLAFVMFYLMRDTPESQG
                     LPPIDEYKGEKVVEKVESAHTLSSKDIFYKYILNNKFLWAIAIANVFVYFIRYGIIDW
                     APTYLKEVKHFSVDKQSWAYFLYEYAGIFGMLASGYLSDKVFKGHRAPPMLLFLAGVL
                     IAIVVYWKNPAGNPLIDNICLVAIGFLIYGPVMMIGLQAADLVPRVATGTATGLTGLF
                     GYLLGSASAGYVMGKLVDMFGWDGGFYALILSCFLAFAFIALTLFKKTSKQLEV"
     gene            complement(9036..10109)
                     /gene="glpQ"
                     /locus_tag="PXE92_001736"
     CDS             complement(9036..10109)
                     /gene="glpQ"
                     /locus_tag="PXE92_001736"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDL5760959.1"
                     /translation="MKFKFKTLVAALALSATALGAYAQQSDKLVIAHRGASGYLPEHT
                     LESKALAFGQQADYLEQDLAMTKDNRLIVIHDHFLDGLTDVAKKFPERKRADGRYYVV
                     DFTLDEIKTLEMTENFEVKDGKQAQVYPNRFPMWQSHFTIHTLEEELEFIQGLEKSTG
                     KKIGIYPEIKAPWLHHKEGKDIALETLKVLKKYGYDSKTSPIYLQTFDFNELKRIKTE
                     LLPKLGMDVKLVQLVAYTDWHETEEKDKNGNWVNYDYDWMFKDGAMAEVAKYADGVGP
                     GWYMLVDKEKSKVGNIVYTPLVKELAKYKMELHPYTVRKDALPDFFQNVDEMYDALLN
                     KAGATGVFTDFPDTGVEFLKKQK"
     gene            complement(10179..11624)
                     /gene="glpT"
                     /locus_tag="PXE92_001737"
     CDS             complement(10179..11624)
                     /gene="glpT"
                     /locus_tag="PXE92_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HDL5760960.1"
                     /translation="MFGPFKPAPHIAELPADKVDARYKFLRWQVFAGIFFGYAAYYFV
                     RANFDLAQKGLIEAGMYTKTDLGVIGTAAGLAYGLSKFVMAGMSDRSNPKVFLPTGLL
                     LSGLCMTLMGLMPWATSSILVMWVMIFLNGWFQGMGWPPCGRTMVHWWSKSERGTIVS
                     IWNTAHNLGGMVPGAMVLLASALYFSEYGVEATAKDVWQQALYFPGIAAMIAAIPIYL
                     VMKDTPQSCGLPPVEKWRNDYPDDYNEKTYEHDLSTKEIFVTYVLKNKLLWYIAIANV
                     FVYLIRYGVLKWSPVYLGEVKHFNIKGTAWAYTIYELAAIPGTLLCGWVSDKLFKGKR
                     GLTGFIFMILTTAAVVAFWLNPATPESEIAQYAGHAWYENPYQLMDFIWMTTIGFLIY
                     GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGTVAASAVVGWAADKFGWDGGFYVM
                     IGGGVLAILLTFIVMVEEGKHKAKLEDHYGK"
BASE COUNT         3365 a         2454 c         2505 g         3353 t
ORIGIN      
        1 gttcacagaa aaattaggat ctaataagag taagaataaa gatctttata tagatctata
       61 ttatatttag tgtcgcattt agatcttaac ctctctaaaa atctatttcc cagatgatcc
      121 ctttttacgc taaaatatgc gttcattttt cagcagaatt tgtaagatag tagaagagat
      181 atgatttaca accaaattta cgatgtgatc gtggtcggcg gtggtcacgc cggcacagaa
      241 gcggccctag caccggcacg aatgggctta aaaaccctga ttttaaccca caatgttgat
      301 accttagggc aaatgtcgtg caacccggct atcggaggga tcggcaaagg ccatctggtt
      361 aaagagatcg atgcgatggg cggtttaatg gcaaaagcaa cagacgttgc cgggatccaa
      421 ttccgtaccc taaacaactc aaaagggcct gcggtgcgtg ccacccgtgc ccaagctgac
      481 cgtgtgcttt accgtaatgc ggtacgcact gcgttagaaa atcaaccaaa tttagatatt
      541 ttccagcaag aagtagtgga tattttggtg gaaaacaacc gtgcagtggg tgcagttacc
      601 aaaatgggct taacgtttaa agcccgtgcg gtagttttaa ccgctggtac gttcttagcg
      661 ggtaagatcc acattgggtt ggataactat gcaggtggtc gtgccggcga tcctgctgca
      721 acaatgttgg cagatcgtct gcgtgatctg aatttgcgtg ttgatcgcct taaaacaggt
      781 acaccacctc gcctcgatgc ccgtaccatc aactttgacg tacttgccaa acagcacggc
      841 gatgaggtgt tacctgtctt ctcttttatg ggcgatgtct cacagcaccc acgccaaatt
      901 ccgtgctaca tcacccacac taacgatcaa acccacgatt taattcgcaa cagtcttgat
      961 cgcagcccga tgtacaccgg tattatcgaa ggggttggtc cacgttactg cccgtctatt
     1021 gaagataaag taatgcgttt tgccgatcgt aatagccacc agatctacct tgaaccggaa
     1081 ggcttaaata cgattgaggt ttacccgaac gggatctcca ccagcttgcc gtttgatgtg
     1141 caaatgggga tcgtcaactc aatgaaaggc ttggaaaaca cccgcatcat caaaccgggc
     1201 tatgcgattg agtacgacta cttcgacccg cgtgatttaa aaccaaccct tgaaaccaaa
     1261 gcgattgacg gtttattctt tgccggacaa attaacggca cgaccggtta cgaagaggca
     1321 ggtgcgcaag gtttgctggc agggattaac gcagcgttac aggttcaagg taaagaggcg
     1381 tggtatccaa cccgtgatca agcctacacc ggcgtgttgg tggacgacct ctgtacatta
     1441 ggcaccaaag agccataccg tgtgtttacc tctcgtgccg aataccgtct gttgctgcgt
     1501 gaagacaatg cggacattcg tttaacacca aaagcccacg aactaggatt aattgacgag
     1561 gcacgttggg tgcgtttcaa ccaaaaaatg gaagcgattg agcaagaaag agctcgtttg
     1621 aaatccactt gggcacattt gcaaatgcca aatctggacg aattgaacgc gttattggct
     1681 aatcctttag cccgtgaagc aagcggtgaa gacttaatcc gccgtcctga aatgagttac
     1741 gaaaagctga cccaaatcgc cctatttgcc cctgctattg aagacaagca agtggcagaa
     1801 caggtggaaa ttgcgatcaa atatcagggc tatattgagc atcaatacaa cgaaatcgaa
     1861 cgccataaac gccacgaaaa caccctgatt ccggtagagt ttgactacga caaagtcgaa
     1921 agcctctcca acgaagtgcg agctaaattg atgcaacacc gccctgtctc tatcgggcag
     1981 gcaagccgca tttccggcat cacaccggca gcgatttcca ttctgttggt gaatttgaag
     2041 aagcaaggaa tgttgaaacg gggtgagctg taaatactac aagcggttgg ttttgcagaa
     2101 atttttgcaa aattgaccgc ttgtattctt tggagaagga aatacccgaa ctaccgccgt
     2161 atttttaatg atatatctgc gtaaactcgg tttttcgccg ttcgatcacc aaatgtttgc
     2221 ccaaccttcg tggtatttct gcaatgcact tgttcatacc aattatgaaa atctgcgaca
     2281 aggtgtattt gtgactaaag cgtatttagt gatgtttctt gaaaatttat tgtttgaaaa
     2341 aagtcattcg ttaagtaatc gggcattgcg tattaatgaa aataatgatt aaggaatttg
     2401 caaaatgtta gctaaattaa accgcttgct tgctcaagcc gaaataaatt tgaccgatca
     2461 acaaaaagag cagttagttg gttttgtgag attattggat aaatggaata aggcgtataa
     2521 cctcacttcc gttcgcaacc ctgatgaaat gttggttaaa catattttgg acagccttgt
     2581 tgttagtcgt catttacaag gcgaaacgtt tattgatgtc ggcacggggc cggggctacc
     2641 gggcattccg ctggcgattg ctaaccctga taaacagttc gtgctactag acagcttagg
     2701 caaacgcatc acttttatca aaaatgcgtt gcgtgagctt ggtattaaaa acgttacccc
     2761 agtgcaaagt cgagtggagg aatacactga aagccagttt gacggcgtat taagccgagc
     2821 ctttgcctcg cttaatgata tgatcgactg gtgttatcat ttaccgactg aaaacggtaa
     2881 attttatgca ttaaaaggcg tgtatgatga gcaggaaata attgaaatca aacaaccgat
     2941 tcagctagtg gaagtgatta agcttgaagt acctgagttg gtaggagaac ggcatttagt
     3001 agtgttgaaa aagccctaat acattggaag tttaatgata caagcggtcg aatttgtaaa
     3061 tttttttgca aatctgcctg cttgtgttaa ctatttttca taaagcatac ctggttaata
     3121 aggtgtgctt tttttataac ctattatttc atctgattta tttctatttt gtgatgtgct
     3181 tcacaaaaac aaaaaaacat aatgtagtaa aaaatattcg taattgaagc ccttatttct
     3241 ttacctgaaa ataagcgaac ttaattatat aacgaggagg ttcgtaatga acagggtaac
     3301 aaataaggca gatgagtttg ctaaactcag tacgtttgaa cgtattgctt atggtagtgg
     3361 cgacttagcc caaaatttag tttttggtac agttggtggt ttcttactca cttacttaac
     3421 tactgtaaac ggcatttctg ccgtagcagg agcaacgatt ttcttaattg taaaatgggg
     3481 aaatgtgttt tgggatccgt ttgtcggtgc ctttattgac aaaagcaagc cctcagcaca
     3541 gggtaaatac cgcccgtatt tactgaaatt tgggattcct cttgtggttt tagcttcact
     3601 actatttctt cctcttgaat cagtacgtgg ctcagtgatt tatgctttcc tttcttattt
     3661 tgccactgcg atggtttatt cttttgttaa tattccttat ggctcgcttt ctgcttctct
     3721 tactcgagac acagacgaaa ttgctaaatt aaccacaacc cgtatgacaa tggcaaatat
     3781 cgctaatttg tttgtttata ccttattccc actttttgtg cagttacttg caccacatgc
     3841 cgaattaaaa aacaccggct ttttcggtat tgagctctat ttaggtgatt atatgtctgc
     3901 tgctgcaggc cctgcttggt ttaaggttta tgcggtctat atggtaattg gatttgtggc
     3961 gttaatgctc tcttattttg gtactaaaga gcggattatt ccaacagcgg aagaaacaga
     4021 taaagtcaag tattcagatt tagttaatga actcaaacgc aatcgtccat tacagatttt
     4081 agggttattc ttcttaatag gttttacttt tatgttcttc ggaaatacgg tgtggccttt
     4141 ttacctaaaa tataatattg ggcattctga gtggattgcc tccgtcggtt tattaggctc
     4201 tatccctggg attttccttg tattcttatg gccgaaacta cgtcgcacta tcggtaaaaa
     4261 gaactttttc tatctatttt tagggatttt cgttctaggg caactttgtc tatgggtatg
     4321 gcaatttgac tccttcaaat actctccaac cttaggctat atcggtcgtt tcttacaaca
     4381 atggggatta acttctgcta ccggttttat gtgggcgtta gtgcctgagg ttgttacctt
     4441 tggagagttt aagtcgaaaa aacgtgtagc aggtattatt aatgcgttaa tgggcttgtt
     4501 ctttaaaatc ggcttggcgt taggcggtat tattccgggt tatattaatg cggtttatgg
     4561 ttttaacggc tcgcttttgg ctcaaaccga agaggcttta tttggtatca atctttcaat
     4621 gatttgggct ccaattattt tagcgattat tgcaggattt gtgatgagtc gctatccgtt
     4681 aagcgatact gatattgatc atatcaacga aaaaattact gcttattcca aataatttga
     4741 gtataggaga atagattatg caaattcaaa atccagtttt acccggtttc aatccagatc
     4801 catctattgt gcgtgtgggt gatacttact acattgcaac ttctactttt gaatggtttc
     4861 cgggagtgag aattcacgaa tcgaaagatt tagtgcattg gaatttagtt aaaaatgtct
     4921 tagatacaac cacgttgtta gatatgcgag gcaatccctc ttcaggtggt atctgggctc
     4981 ctgatctttc ttatgcggaa ggtaaatttt ggttggttta taccgatgta aaaattacag
     5041 acggtgcatt caaagatatg actaactatc taactactgc caaagaaatt caaggtcctt
     5101 ggtcagctcc gattaaattg aatggtattg ggtttgatgc ttcgttgttt cacgatgatg
     5161 atgggcgaaa atatttagtg caacagactt gggatcaccg tgaatatcat cacccctttg
     5221 acggtattac gttaacggaa tttgatgttg ccacaatgaa actcaaacct gaaacccagc
     5281 gtacgatttt tgaaggtaca gaagtgaaat tggtggaagg tccacatatt tataaaatta
     5341 atggcgaata ttatctgttt gcggcggaag gcggcacagt atttacgcat caagaagtag
     5401 tggctcgttc taaaacattg gaggctcact ctttccaact ggctccaaat acaccgttta
     5461 ttactaattt tgatacacct aattcttacc tacaaaaaca agggcacggt tcattagttg
     5521 ataccccaag tggtgaatgg tattacgctt ccctcacagc aagaccttgg aatcatgcaa
     5581 cagaatccgc aaccgatcct cgtggttggt caacattagg gcgtgaagcc gccattcaaa
     5641 aagtagaatt tgatcaagac ggctggcctt atattgtggg tggacacggt ggaaaaacct
     5701 ttgtagaagc cccaaaagat gcaattttta ccgaagctcc tattgatcat tctcaacacg
     5761 atgagtttga tagctcaacg ttagatatta actggaacac ttaagagtgc cttttagtaa
     5821 agagatgggc gaagttggta atggtgtttt aaaattgatt gggcgaggct ctcttgcaaa
     5881 tacacacgat ttatcgctaa tcgcacgccg ttggcaagcc ttctattttg atgcggaaac
     5941 caaagtgaaa tttacaccgt tttcttatca atctatggca ggtttaacta actattacaa
     6001 tcactcacac tggtcttgga ttttcatcac caaaaatgat caaggacaac aggtgattga
     6061 agttgcagaa aataaaggtg gactcagaaa tgggcaatat acttcttacc ttaaagataa
     6121 agcaattgtc attcctgatg gaacggagta tgtttggttt aagactaaag ttcggaaaga
     6181 aacttaccgt tatgaatatt cattcgatgg caaacaatgg cacactattc cggttgaatt
     6241 agatgcggca gtgctttcag atgattatgt gttacgcagt tatggcggtt tcttcacagg
     6301 agcttttgtc gggctggctg cagtggatta ctccagttat gaatctacag cagaatttag
     6361 ctactttgac tataaagagt taggcgataa gcaacttaca gacggctcat tctcttggga
     6421 aaaatctgaa agttgctttg gctaaaatga ggagaatatc acaatgaaac aacgcagatt
     6481 tggtaaaacc aacaaaatgg tgtcagaaat tgggttaggc acttggcagc ttgggacgaa
     6541 atggggtgaa ccgttcaatc atcaagaggc gatggcaatt ttagaaaccg cttatgagca
     6601 aggcatcaat tttattgata ccgctgatgt gtataacaac gggcaaagcg agaaagccat
     6661 tggtgatatt ttgaaaaaat accctgactt tttctatgtc gttaccaaat gtggacgtgc
     6721 gttaaacccg catactgctg aaatgtacac gccacaggca atcgaaaaat ttgttgatgg
     6781 tagtttaagc catcttggca cggaaaagtt ggatatgatt ttgctccact gcccgccaac
     6841 gttggtttat cgcaatgatg agatttttac gaaattggaa cagcttaaag ccggcggaaa
     6901 attaatagac tacggtgtga gtatcgaaac ggcagaggaa ggcttgttgg caatggagta
     6961 tgacattgcg gcaatggaag ttatcttcaa tatgttccgc ttaaaaccat tggagcaact
     7021 cttcccaacc gctcagcaaa aaaatgtggg tattatcgcc cgtgtactgt tggcaagtgg
     7081 tttgcttaca ggcagatata atgcctgcac ccaatttggc aaagacgacc accgcacatt
     7141 taaccgcaat ggtgaagcct tcgataaagg cgaaaccttt tcgggtgtgg attatcaact
     7201 cggtttacaa gcggtggaag aattgaaagc cctattcggc acggaagatt taattcctta
     7261 cgccctacgt tgggtattga tgaatgaagc tgtgagtaca gtaatcccgg gagcaagtaa
     7321 ggtttcacaa gtaattacta acgcagcggt ggataatttc cctccactca ctgaaaatga
     7381 aatgcaaaaa gtggaagata tttacaaccg cttaattcgc ccaagtgtgc atcatttgtg
     7441 gtaatttatc caacgctata aaaaatggaa ctctaacttg agttccattt ttgtcaattt
     7501 tagccttaaa cctctaactg tttagaggtt ttcttaaaca gagtcaatgc aataaacgca
     7561 aaggctaaga aacaggaaag gatcagggca tagaaaccac cgtcccagcc gaacatatca
     7621 accagtttac ccatcacata acctgcactt gcagagccta acaagtagcc gaataaaccg
     7681 gttaaacctg ttgctgtacc ggtggcaaca cgaggcacta aatccgctgc ttgtaaaccg
     7741 atcatcatca ccggcccgta gattaagaaa ccaatcgcca ctaagcagat gttgtcgatt
     7801 aacgggttgc cggctgggtt tttccagtac accacaatcg caattaacac accagcaagg
     7861 aataacaaca tcggcggcgc acggtgacct ttgaatactt tgtcgcttaa ataaccgctt
     7921 gcaagcatac cgaagatacc ggcatattca tacaagaagt acgcccagct ctgtttatcc
     7981 acagagaaat gtttcacttc ttttaagtaa gtcggtgccc agtcgataat gccgtagcga
     8041 atgaaataga caaacacgtt ggcaatcgca attgcccaca ggaatttgtt gtttaaaata
     8101 tatttgtaga aaatgtcttt ggaagagagt gtgtgggcag actccacttt ttccaccact
     8161 ttctcgcctt tgtactcatc aatcggcggt aagccttgag attccggcgt atcacgcatc
     8221 aaatagaaca tcacaaacgc cagtacaatc gcaatcaacg ccggcagata gaacagggat
     8281 tgccacacgc caaaaataga taagcctaaa atcgccaacg gcccgattaa accgccgccc
     8341 aagttgtgcg acacgttcca ccagctccac cacacgccac gttcagaggt tgagaaccag
     8401 ttggtcatcg ttttcgcccc cggcggatag cccattcctt ggaaccagcc gtttaacgcc
     8461 gccaaaatga tcataattgg aatagacgaa agcacgcccg gtactaaacc gaacaccaga
     8521 ctcacaatcg ctgaaccgag caagccgata gtgataaagt atttcgggtt agaacggtcg
     8581 gaaacgttac ccataataaa tttactgaag ccgtaagcga gtgataatgc cacgcccacc
     8641 gtacctaagt ctgctttggt gaagccatat tcatcaatca aatacggcat tgccaacgag
     8701 aagtttttac gaattaaata atatgccgca tagccgataa agacgcctgc aaacacttgc
     8761 caacgtaatt tgcgatattc cgcatcaact ctgctggctt ccactttttg ttctgctggt
     8821 ggagaggctt ttagaaagga aaacatttta ctactccttt aagaatgaaa tcctatggct
     8881 actataatct ttcatttgga gcagaaaaag tggatttttg aaaatttgtg agcaagatta
     8941 aaattatttt gagcgaaaac gaaaagcggt tgaatttcct tctttttttg caaaaaattt
     9001 gagaaatcta accgcttgtt tcacttaaaa atcagctatt tctgcttttt caaaaattcc
     9061 acgcccgtat cagggaagtc agtaaagacg cctgttgcac ccgctttatt cagcagggca
     9121 tcgtacattt catcgacatt ttggaaaaag tccggcagag catctttgcg cacggtgtat
     9181 gggtgaagtt ccattttgta cttcgccaac tctttcacta atggcgtgta aacaatgttg
     9241 ccgactttag atttttcttt atccaccaac atataccagc ccgggccgac accatcggca
     9301 tattttgcca cttctgccat cgcaccgtct ttgaacatcc agtcgtagtc gtaattaacc
     9361 cagttgccgt ttttatcttt ctcttcggtt tcgtgccaat cggtgtaggc aactaactgc
     9421 accaatttta cgtccatacc cagtttcggt agtaattcgg ttttgatccg tttcagctcg
     9481 ttgaaatcga aggtttgcag gtaaattggt gaggttttgc tgtcgtagcc atattttttc
     9541 aacactttca gggtttcgag tgcaatgtct ttaccctctt tatggtgcaa ccaaggggct
     9601 ttaatttcag gatagatccc aatttttttg ccggttgatt tctctaatcc ttgaataaat
     9661 tccagctctt cttccaaagt gtgaatggtg aaatgggact gccacatcgg gaagcggttc
     9721 gggtaaactt gtgcctgctt gccgtctttc acctcaaaat tctcggtcat ttcaagggtt
     9781 ttaatctcat caagggtgaa atccaccaca taataacgac cgtctgctcg tttacgctca
     9841 gggaattttt tcgccacatc agttaaaccg tctaaaaagt ggtcgtgaat cacaatcagg
     9901 cggttatctt tggtcatagc aagatcttgc tctaaatagt ccgcttgttg cccgaatgct
     9961 agagctttag attcaagcgt atgctcaggt aaataaccgc ttgcaccacg gtgggcaatc
    10021 actaatttat cagattgttg tgcataggca cccaatgctg tcgcggacaa tgctaatgca
    10081 gcaaccaatg ttttgaattt aaatttcata gaattacctc atataatgta aaaataaaag
    10141 gaagaacaaa aatgtccttc cttttgataa gttatttatt atttaccata gtgatcttct
    10201 aattttgctt tgtgcttgcc ttcttcaacc atcacaatga aggttaagag aatggctaat
    10261 acaccaccac cgatcatcac gtagaaaccg ccgtcccagc caaatttatc tgctgcccag
    10321 ccaactactg cagaggctgc cactgtacca cctaagtaac cgaataaacc ggtgaaacct
    10381 gctgctgtac ctgctgcttt tttcggtgca agttcaaggg cgtgtaagcc aatcaacatt
    10441 accgggccgt agattaagaa accgatagtg gtcatccaaa tgaagtccat taattgatat
    10501 gggttttcat accaagcatg gcctgcatat tgtgcaattt cagattccgg tgtcgcaggg
    10561 ttgagccaga acgcaaccac tgctgcggtg gtaagaatca taaagatgaa accggttaaa
    10621 ccacgtttgc ctttgaacag tttgtcagag acccaaccac agagtaatgt acctggaatc
    10681 gcagctaatt cataaatggt atatgcccat gctgtacctt taatgttgaa gtgttttact
    10741 tcgcctaagt acaccggcga ccatttcaat acgccatagc ggattaagta aacgaagaca
    10801 ttcgcaatgg caatgtacca taacagtttg tttttcagca cataagtcac gaaaatctct
    10861 ttggtgctta aatcgtgttc ataggttttt tcgttatagt cgtcagggta gtcgttacgc
    10921 catttttcaa ctggcggtaa accgcaagat tgtggagtat ctttcatcac aaggtagatt
    10981 ggaatagctg cgatcattgc tgcaattccc gggaaataaa gggcttgttg ccatacatct
    11041 tttgccgttg cttctacacc atactcactg aaatagagcg cacttgctaa tagcaccatc
    11101 gcccccggca ccataccgcc taagttgtga gcggtattcc agatagaaac gatagtacca
    11161 cgctcagatt tagaccacca gtgaaccatt gttcgtccac acggtggcca acccatacct
    11221 tgaaaccagc cgtttaagaa gatcattacc cacattacta aaatgcttga tgttgcccaa
    11281 ggcattaagc ccataagggt catacataga cctgaaagta acaatccggt cggtaaaaat
    11341 actttcgggt tagagcggtc ggacattcct gccatcacga attttgataa accgtaggcc
    11401 aggccggcag ctgtaccaat cacaccgaga tcggtttttg tatacatacc agcttcaatc
    11461 aagccttttt gtgctaagtc gaagtttgca cgcacaaaat agtaagcggc atagccgaag
    11521 aaaattcctg caaacacttg ccaacgcaag aatttatatc ttgcatcgac tttgtccgcc
    11581 ggtaattccg caatgtgcgg agcgggttta aatggaccaa acatagtatt ctccaatatt
    11641 acttagtaaa acctctgagt aattcctttt taggaaa
//
LOCUS       DANMBQ010000080        11350 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.080, whole genome shotgun sequence.
ACCESSION   DANMBQ010000080 DANMBQ010000000
VERSION     DANMBQ010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11350
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.080"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            350..1078
                     /gene="ttrB"
                     /locus_tag="PXE92_001738"
     CDS             350..1078
                     /gene="ttrB"
                     /locus_tag="PXE92_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrB"
                     /protein_id="HDL5760961.1"
                     /translation="MDLSKRSFLKELSALTVGASFVPLQSAQAFMPAWREGDENKRYA
                     MLIDLRKCIGCQACTVSCSVENATPLHSFRTTVRQYEITNGTQVVNNVVLPRLCNHCD
                     QPPCVPVCPVQATFQRKDGVMVINNEQCIGCGYCVQACPYDARFINEETKTADKCTFC
                     THRLEVGLLPACVESCVGGARVIGDLNDPKSQISQLYQAHKDDLKVLKPEAGTVPHVF
                     YVGLDDDAFVSKIDGQPMLWTGEA"
     gene            1080..2111
                     /gene="nrfD"
                     /locus_tag="PXE92_001739"
     CDS             1080..2111
                     /gene="nrfD"
                     /locus_tag="PXE92_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysulfide reductase NrfD"
                     /protein_id="HDL5760962.1"
                     /translation="MIREVLVEPQHIVWLPWIVHYFFFVGVAATAVFTAVLFAKKSLK
                     PTACELAAVTVALIGSIVAPVALTADLHQPSRILHFYTDFAWRSPMAWGAIILPLFSV
                     AVAGYFVLALAHHTRPNLPKWLAWLQLPILQNQGLLWAFRLFATLTAIGIIGYTVLET
                     YQTGTRTLWHSAWLLPIMLFSAWAVALGLTQAVCKMLFHTQTNTGLWTKLCLILTALS
                     LVGLAFSSPQATQDFAQLFNGSITAYLVGIFWLIALICNFSAKNHRLQWLGVLALIAF
                     GWLLRWVLVIQVQTIAKTNALQNPYHFDWTAVDGGLGIVSIFGLTVLVSIVVWQLILI
                     ICGGRKGEQ"
     gene            2101..5196
                     /gene="ttrA"
                     /locus_tag="PXE92_001740"
     CDS             2101..5196
                     /gene="ttrA"
                     /locus_tag="PXE92_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrA"
                     /protein_id="HDL5760963.1"
                     /translation="MNNKRRNLLKGGLALGGAAAFGAGYSPKVSEIAKGVMHGTSGEK
                     TRDAIHGNSLTPEYQVKDGKLLSNPEQIVCNTQCMGCWTQCGIRARVDLNTNQVIRIS
                     GNPYHPLSSDKTLPFGMPIAKAELLLAGESGIENRSTACARGAAFLEGVNSPYRITQP
                     LKRVGKRGEGKWQTISFEQLVEEIINGGNLFGEGEVEGLKTIRNLVDPINPKQPDLGM
                     KANQLLVTFAGPEGRQPILQRFAQKSFGTINFSNHGAYCGAAYRAGSGAFMKDFDNQQ
                     HAKPDWDHAEFILFIGTSPAQSGNPFKRQARQLAKRRPDDNFSYVVVSPRLEMTSSLA
                     TQNNHWVPIKPEGDLALVMGMLRWIIENERFNADYLSRPSLAAMENAGHVSYANASHL
                     IICEPNHPKFGQALRISDLQDVQLDPEEKVEENLIVVKDQASGELISAKDCLQAVIFV
                     EQIAKLLDGSEVLVKSSMQLLKEATQEKTLAEYSDICGVPVQTIENLAKKFTSHGHKA
                     NAITHGGTMHSTGFYTSWAILLLNAMVGNLNKKGGMAVAAGKFKDFGDGPRYNLANFP
                     NEVKPKGTNLARSKKAYQNSSEFKQKVTKGENPYPAQGAWYPFTGGQTTEMFTSMVQG
                     YPYFAKAWINHMANPVYGLTAMNPIALEKLKDPKILPLFVSIDAFMNETTALTDYIVP
                     DTHNFESWGFSTAWGGVPQRTSTARHPIVPSKNAKTAEGDTICMENFVIAVAKKMGLP
                     GFGENAIADLEGNRYPLHRTEDYFLRAAANIAFAGEKPAPDASEQDLLLTGVQRIMPK
                     IEQTLKAEERLKVANVYCKGGRFAPHESAWKEENMEFQWKNCLQIWNENVYKAQHHSN
                     GEHYWGCPRYMSPRFADGSTLEQHYPQSEWGFKLISFKSNIMSSITAPLLRLLSIKPE
                     GLVAMNRLDAEEKGIKHGDVVKLSTPTAGLTVQIVVLDGIARGTIGIEHGYGHKQIGA
                     SSYTIDGVEIPANPMIAKGINLNDLGIIDHTKAVKSPWVDWVCGSAVRNGIPAKVEKL
                     A"
     gene            5337..6182
                     /locus_tag="PXE92_001741"
     CDS             5337..6182
                     /locus_tag="PXE92_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5760964.1"
                     /translation="MTFVKKTALSLIATALFATSSFAAEQSQYQHIRNATAKIEYAGK
                     TFLVDPYLAEKDRYLPPNAKKRNPTLDMTVSIDEVLNGVDAVIVTHTHHAHWDDVAQQ
                     RVPKNLPIFVQNAGDARLIRSQGFTDVRVVGKDTPFEGVTLTRTRGQHGTDAMYANPK
                     IAEMVGDAMDVVMKAEGKPTVYLVGDTIWNHEIEHSFNTYKPDFVVLNAGCAKLPNFE
                     GSPIMCTEDVSKAHKIAPQAKILTVHMDALPQTSISSDQMRDYVQKEGLNRVTVPKNG
                     DVIKF"
     gene            complement(6295..7692)
                     /locus_tag="PXE92_001742"
     CDS             complement(6295..7692)
                     /locus_tag="PXE92_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDL5760965.1"
                     /translation="MKLSKLAFSVALALTVTACTTGNMSNDGTLQQAQQTYQSYDEIT
                     KQYQINEQWWQGYTDAELNRVVDLAIKNNLDLAKSGIAVNKALYNANLVGANLVPTFS
                     GSGSVSAAKGLGSASSNNVSTGVSTTAAQAAFNLSYTVDLWRRLADTASAAEWTHKAT
                     IEDLKATRLSIINAVVTTYYQLAYYRDAIRITEESIRHYEQISRILTNKMNAGAIDSL
                     AVDQAQQAVLNARNSVIDLKTNQKIAEQTLRNLLNVQPNTPLNIRYPNIMSVKLQGVD
                     LNVPVSAIANRPDVVGSLQRLQSAFKTLTATEKSWFPTLTIGGSITGSATNIGNVADN
                     PVGNGLIKLDLPFLDWNRVKNNVKISETDYVTARLNYEQKITSALNEIDRYYYSYTQS
                     RSSLKILQDTNAKNKRISSYYKNRYEQGVSEFREWITALNTELNSQLAILNAKYAILT
                     NENAVYQAMAGKYRR"
     gene            complement(7782..8405)
                     /gene="gmk"
                     /locus_tag="PXE92_001743"
     CDS             complement(7782..8405)
                     /gene="gmk"
                     /locus_tag="PXE92_001743"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL5760966.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAELKAILIAERLSLGSQQIRHQHLITDLLNN"
     gene            complement(8518..8991)
                     /gene="gpt"
                     /locus_tag="PXE92_001744"
     CDS             complement(8518..8991)
                     /gene="gpt"
                     /locus_tag="PXE92_001744"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL5760967.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            complement(9137..10546)
                     /locus_tag="PXE92_001745"
     CDS             complement(9137..10546)
                     /locus_tag="PXE92_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5760968.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSVSVSPNYSYRTVA
                     YRLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYSRQNKEVFFTLEKLF"
     gene            complement(10742..>11350)
                     /locus_tag="PXE92_001746"
     CDS             complement(10742..>11350)
                     /locus_tag="PXE92_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL5760969.1"
                     /translation="AEKEVDPIAIIKAKGIDDTNYGLKLGNSKETIEGKVTVRTQSYL
                     YNQPYSVVTAQAVQRNGWENGNYIDKVDGTVTVKGLKTEKLPTEGTATYSGKAFNHDG
                     AKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLIVLEEGTINNTQISSTVHGNNPLNLSG
                     KYTVEFFGKNAEEIAGEIQTKANLTGEVSNFGLAGTRGDIQK"
BASE COUNT         3081 a         2635 c         2594 g         3040 t
ORIGIN      
        1 aatacagtaa tgattctctt ataaatagta ttgttatatc taaattaaaa gcaggatgga
       61 aaattagaaa aggaaagaaa cataatatat taattgcccc aaattctagg agattagcga
      121 tacctagtac cccgagtgat attaatgcgt ataaaaactt tagatctaaa ctaaaccatc
      181 ttattgcttt ttaattagta tcaatgccct attatctact tgtatagggc atttcccttc
      241 atccttgacc caaatcaact ttccccttga tatgtggaaa accacaatac cttgccgttc
      301 cctctccgcc ttagaatacc tttgttattt ttaaatttgt gggggaaata tggatttaag
      361 caaacgttcc tttttgaaag agctttccgc cttgacggtg ggggcgagtt ttgtgccgtt
      421 gcaatcggcc caggcgttta tgccggcttg gcgtgagggc gatgagaaca aacgctatgc
      481 gatgctgatt gatttgcgta aatgtatcgg ctgtcaagcg tgtaccgtga gctgttcggt
      541 ggagaacgcc acgccgttgc acagtttccg caccacggtg cgtcaatatg aaatcaccaa
      601 cggcacgcag gtggtgaaca atgtggtgtt gcctcgtttg tgtaaccatt gcgatcaacc
      661 gccgtgtgtg ccggtctgcc cggtgcaggc aacctttcaa cgtaaagacg gtgtgatggt
      721 gattaacaat gagcagtgca tcggctgtgg ttactgcgtg caagcctgcc cgtatgatgc
      781 ccgttttatc aatgaagaga ccaaaaccgc cgataaatgc accttctgca ctcaccgttt
      841 ggaggtaggt ctgctgccgg cgtgcgtgga aagttgcgtg ggcggggcaa gggtgattgg
      901 cgatttgaac gacccgaaaa gtcaaatttc ccaactttat caagcccaca aagatgattt
      961 gaaagtcctg aaaccggagg ccggcaccgt gccacacgtt ttctatgtgg ggctagacga
     1021 tgatgccttt gtgagcaaaa ttgacgggca accaatgctc tggacggggg aggcgtaaaa
     1081 tgattcgtga agtattagtg gaaccgcaac atatcgtctg gttgccgtgg attgtgcatt
     1141 atttcttctt cgtaggcgtg gcggcaacgg cagtgtttac cgccgtgctg tttgcaaaaa
     1201 aatcactgaa accgaccgct tgcgagctgg cggcggtgac ggtagccttg attggctcga
     1261 ttgtcgcccc tgtggcattg actgccgacc tgcaccaacc gagccgtatt ctgcatttct
     1321 acaccgattt tgcgtggcga tctccaatgg cgtggggagc gattatcctg cccctgttca
     1381 gcgtggcggt agcgggttat tttgtgctgg cattggctca ccatacccgg ccgaacctgc
     1441 cgaaatggtt agcgtggcta cagttgccga tactgcaaaa tcaaggcttg ctttgggcat
     1501 tccgcctgtt tgccacactc accgctatcg gcattatcgg ctacaccgtg cttgaaacct
     1561 accaaaccgg cacaagaacc ttatggcaca gtgcgtggct gctgccgatt atgctctttt
     1621 ctgcgtgggc ggtggcattg gggcttaccc aagcggtctg caaaatgctg ttccacaccc
     1681 aaaccaacac ggggctatgg acaaaactct gcctgatttt aaccgcactt tcgcttgtcg
     1741 gactagcatt cagtagtcca caagccacac aagattttgc ccagctcttc aatggctcaa
     1801 tcaccgctta ccttgtcggc attttctggc taattgccct catttgcaat ttttctgcca
     1861 aaaaccaccg cttgcaatgg ctcggcgtgc ttgccctcat cgctttcggc tggctactcc
     1921 gctgggtact ggtgatccaa gtccaaacca ttgccaaaac caatgccttg caaaatccat
     1981 atcatttcga ttggacagcc gtcgatggtg gtttggggat tgtctcgatt tttgggctaa
     2041 cggtgctagt aagtatcgtg gtatggcaac tgattttaat aatttgtggg ggaagaaaag
     2101 gtgaacaata aacgcagaaa tctgttgaaa ggcgggctgg cacttggtgg ggcggcggcg
     2161 tttggggccg ggtattcgcc gaaggtgtcg gagattgcca aaggggtgat gcacggcaca
     2221 tcgggcgaga aaacccgtga tgcaattcac ggtaattcgc tcacgccgga gtatcaggta
     2281 aaagacggca aactgctcag caatcctgag caaattgtgt gcaatacaca gtgtatgggc
     2341 tgttggacgc agtgtggcat tcgggcgagg gtggatttga acaccaacca agtgattcgc
     2401 atttcgggca atccgtatca cccgctttcc tccgacaaaa ccctgccgtt cggtatgccg
     2461 attgccaagg cggaactgtt gctggcgggc gaaagtggca ttgaaaatcg ctccaccgcc
     2521 tgtgctagag gggcggcgtt cttggagggg gtgaacagcc cgtatcggat tacccaaccg
     2581 ttgaaacggg tcggaaaacg gggcgaaggc aagtggcaga ccatcagctt tgagcagttg
     2641 gtggaggaaa tcatcaatgg tggcaaccta tttggtgaag gcgaagtgga gggcttgaag
     2701 acgatccgca atctggtcga tccgattaac ccgaaacagc ctgatttggg aatgaaagca
     2761 aaccagcttt tagttacttt tgccggcccc gaaggtcgtc agccgatttt gcaacgcttt
     2821 gcccaaaaga gcttcggcac gatcaacttt tccaaccacg gggcttattg tggcgctgcg
     2881 taccgtgccg gttcgggtgc ctttatgaaa gattttgaca accaacaaca cgccaagccg
     2941 gactgggatc acgctgaatt tattctgttt atcggcacgt ctccggcaca gtcgggcaat
     3001 ccgtttaagc gtcaggctcg ccagcttgcc aaacgccgcc ctgatgacaa tttcagctat
     3061 gtggtggttt cccctcgttt ggagatgacc tcctccctcg ccacccaaaa caaccattgg
     3121 gtgccgatta agcccgaggg cgatttggcg ttggtaatgg gaatgttgcg ttggattatc
     3181 gaaaacgagc gtttcaatgc tgactacctc tcccgcccaa gtctggcagc gatggaaaat
     3241 gccggccacg tcagctatgc caatgcgtca catctgatta tttgcgaacc gaaccacccg
     3301 aaattcgggc aggcgttgcg gattagcgat ctgcaagatg tgcaactcga ccccgaagag
     3361 aaagtggaag aaaacctgat tgtggtaaaa gatcaggcaa gcggcgaact catttcagca
     3421 aaagattgct tacaagcggt catttttgtc gaacaaattg caaaactgct tgatggctcg
     3481 gaagtgttgg tgaaatcctc aatgcagttg ctgaaagagg cgacacaaga gaaaaccctt
     3541 gccgaatata gcgacatttg tggcgtgccg gtgcaaacca ttgaaaactt agcgaaaaaa
     3601 ttcacttcgc acggtcataa agccaatgcc atcactcacg gcggcacgat gcacagcacc
     3661 ggtttttata ccagttgggc gattttgttg ctgaatgcaa tggtcggtaa cctcaacaaa
     3721 aaaggcggaa tggcagtagc cgcaggcaaa ttcaaagatt tcggggacgg gcctcgctac
     3781 aatttagcga acttcccgaa tgaagtgaag ccaaaaggca cgaaccttgc ccgcagtaaa
     3841 aaggcgtacc aaaattcaag cgaatttaag cagaaagtga cgaagggcga aaatccgtat
     3901 ccggcacaag gggcgtggta tccgttcacc ggcgggcaaa ctaccgagat gtttacctca
     3961 atggtgcagg gctatccata ctttgcgaaa gcgtggatca accatatggc gaaccccgtt
     4021 tacggcttaa ccgctatgaa cccgattgcg ttggagaaat taaaagatcc gaaaattcta
     4081 ccgctctttg tctctattga tgcttttatg aacgaaacca ctgcactgac ggactacatc
     4141 gtgccggaca cccacaactt tgagagctgg ggcttttcaa cggcgtgggg cggtgtgcct
     4201 caacgcacca gcaccgcacg ccacccgatt gtgccgtcca aaaacgccaa aactgccgaa
     4261 ggcgacacca tctgtatgga gaatttcgtg attgcggtgg cgaaaaaaat gggcttgccg
     4321 ggctttggcg aaaatgcgat tgccgattta gaaggcaacc gctatccgct ccaccgtacc
     4381 gaagattact tcctacgggc ggcagcgaac attgcctttg ccggtgagaa acctgcaccg
     4441 gacgccagcg agcaagatct gctgctcacc ggcgtgcaac ggattatgcc gaaaattgaa
     4501 caaacgctaa aagccgaaga gcgattaaaa gtggcgaatg tgtattgcaa aggcggacgt
     4561 tttgccccac acgaaagtgc gtggaaagag gagaatatgg agttccagtg gaaaaactgc
     4621 ctgcaaattt ggaacgaaaa cgtgtataaa gcccagcacc acagcaacgg tgaacactat
     4681 tggggctgcc ctcgttatat gtcgccacgt tttgcggacg gctccacgct ggagcagcac
     4741 tatccgcagt cggaatgggg ctttaaactg atttcgttta aatcgaacat tatgagcagt
     4801 attaccgccc cactgttgcg tctgctctcg atcaagcctg agggcttagt ggcgatgaac
     4861 cgtttagatg cggaagaaaa aggcattaaa cacggcgatg tggtgaaact cagcacccca
     4921 accgccggct tgacggtgca gattgtggtg ttggacggta tcgcccgagg cacaatcggc
     4981 atcgaacacg gctacggtca taaacagatt ggggcaagtt cctacaccat tgacggcgtg
     5041 gaaattccag ccaacccgat gatcgccaaa gggattaacc tcaacgacct cggcattatc
     5101 gaccacacca aagcggtcaa atccccgtgg gtagattggg tctgtggctc agcggtgaga
     5161 aatggcattc cggcgaaggt agagaaatta gcctagccga acaagcggtt ggttttgcag
     5221 aaaaatgtgc aaaatcgacc gcttttattg atgtaaggga cactgttcct tatgcaaacc
     5281 agcattgcag agcgtaaaaa atcatactct gcattttaat ttattttgga gaacctatga
     5341 cttttgtcaa aaaaacagca ctgagcctga ttgcaacggc acttttcgct acatcaagtt
     5401 ttgccgctga gcagagccaa taccaacata ttcgtaatgc aacggcgaaa attgaatatg
     5461 ccggcaagac gtttttggtt gatccgtatt tagcggagaa agatcgctac ttaccgccga
     5521 atgcgaaaaa acgtaatccg accttggata tgactgtgag cattgatgaa gtgttaaatg
     5581 gcgtggatgc ggtgatcgta actcacactc accacgctca ctgggacgat gtagcacaac
     5641 aacgtgtgcc gaaaaatctg ccgatttttg tgcagaatgc cggtgatgcc cgtttaatcc
     5701 gttcacaagg ctttaccgat gtgcgtgtgg tcggcaaaga taccccgttt gaaggcgtaa
     5761 ccttaacccg aactcgtggc cagcacggca ccgatgcgat gtatgcgaac ccgaaaattg
     5821 ccgaaatggt cggcgatgcg atggacgtag tgatgaaagc ggaaggcaaa ccgaccgtct
     5881 atttggtggg agataccatt tggaaccacg aaatcgaaca ttcgttcaac acttacaaac
     5941 cagactttgt ggtgctgaat gccggctgtg ccaaactacc aaactttgaa ggcagcccga
     6001 ttatgtgtac cgaagatgtt tccaaagcac acaaaatcgc tccacaagcg aaaatcttaa
     6061 ctgtgcatat ggacgccctg ccacaaacct caatcagcag tgatcagatg cgtgattatg
     6121 tacaaaaaga gggattaaat cgtgtaactg tgccgaaaaa cggtgatgtg attaagttct
     6181 agtagctaaa ctaacattac caaaatggtt taagtagcaa taaatagcga agcgggttaa
     6241 gccatcaagc cttaacccac ttttaccaac catagtatat agttttagat ataattatct
     6301 tctgtattta cctgccattg cttggtaaac cgcattctcg ttggtcaaaa tcgcatattt
     6361 tgcatttaaa atcgccaact gagaattaag ctcggtattc agtgcggtaa tccactcacg
     6421 gaactccgac accccttgtt cataacggtt tttatagtat gaactgatac gtttattttt
     6481 cgcattggta tcttgaagga tttttaacga gcttctcgac tgcgtataac tgtaataata
     6541 acggtcaatt tcatttaagg ctgaggtaat tttttgctca tagtttaaac gggcagtcac
     6601 ataatccgtt tcagaaattt ttacgttatt tttaacccga ttccaatcta agaacggtaa
     6661 atccaattta attaagccgt tacccacagg gttatctgcc acattgccga tattggttgc
     6721 actaccggta atagaaccac cgatggttaa ggttgggaac cagcttttct cggttgcggt
     6781 taaggtttta aatgcacttt gtaagcgttg taacgagcct actacatcag ggcgattagc
     6841 aatggctgac actggcacat ttaaatctac cccttgcaat ttcacgctca taatattcgg
     6901 gtaacgaatg ttaagcggag tatttggctg aacatttaac aaattgcgta atgtttgctc
     6961 ggcaattttt tggttggttt tcagatcaat tacactattt ctggcgttta agaccgcttg
     7021 ttgagcctga tcaaccgcta aactatcaat cgcaccggca ttcattttgt tagttaaaat
     7081 acggctgatt tgctcataat ggcgaatgct ctcttcggta atacgaatcg catcacgata
     7141 gtaagctaac tggtagtaag tagtcacaac cgcattaata atagataaac gggtagcttt
     7201 taagtcttca atggtggctt tatgcgtcca ttctgccgca ctggcggtat cggctaaacg
     7261 tcgccataaa tccacagtat aacttaaatt aaatgcagct tgagctgcgg ttgttgaaac
     7321 accggtcgaa acattatttg aagaagccga acctaaacct ttagccgcag aaacagaacc
     7381 tgaaccacta aaggttggca ctaaatttgc ccctactaaa ttagcgttat acaaggcttt
     7441 attgactgca attccgcttt tggctaaatc aaggttattt ttgatggcta aatcaaccac
     7501 acggtttaat tccgcatccg tatagccttg ccaccattgc tcgttaattt gatattgttt
     7561 ggtaatttca tcatagcttt gataggtttg ctgtgcttgt tgcaaagtcc cgtcattgct
     7621 catattccct gtggtacaag ccgttacggt tagagccaac gccacagaaa atgctaattt
     7681 tgaaagtttc attacatttc cttttgaaaa taaagagggg aaaatgggcg tattctaccc
     7741 aaaaacagat tgcctttcca gttaaatgaa caactgttca tttaattatt taacaaatca
     7801 gtaatcaaat gctgatgacg aatttgttgc gaacctaagc tcaaacgctc ggcaattaaa
     7861 atcgctttta gctctgccaa tgcctgttgg aaatcatcat taataatcac ataatcgaac
     7921 tcattgtaat ggttcatttc cgacaccgcc tctgccatac gtttggcaat ggtttcagcg
     7981 gaatcttgcc cacgcccgat taaacgtttt tccaattctg tttttgacgg tggcaaaata
     8041 aaaacggttt tcacattcgg cactttttcc cgaatttgtc tagccccttg ccagtcaata
     8101 tccaaaaaga catcaatgcc ctgctctagg ctacgttcaa tcatcggcaa tgatgtgccg
     8161 taataattgc caaacacctc cgcccattct aaaaaatacc cttgctcaat cagctgctta
     8221 aactcatcgt gcgaagtgaa ataataatgc acgccgtcct gttctgccgg acgaggctga
     8281 cgggtagtgt gtgaaatcga aagctgtact tccgaacggg gtaaatccgc caacaaggcg
     8341 ttaattaagg aagattttcc tgctccactt ggggcagaaa taatataaag attgcctaaa
     8401 ctcattattt gtatatacct atttgatttt gggaataggg cgaatgatga ttcgccccta
     8461 catttcatag gaataaataa aaaataatgg acaactttca ttgtccatta cacaaaatta
     8521 tctacgtgcc aaaggctgaa cgaaggtaat gcctaaatcc caaggctgct caatccacgt
     8581 ttcttgtgga atatcaatca cataatcatc aaccaacggt gcaccgtgcg gtttcgcaaa
     8641 cacggttaca aaacgagctt tcgggtacat tctgcgaatt tcttttgccg tgttgccggt
     8701 atccactaaa tcatctacca caataaagcc ttcgccatcg gtatcggctg cgtgtaacac
     8761 atttaactca ccttggctat cgtgatcgta gctggcaatg cacactgttt ctacgtggcg
     8821 aatacccaac tcacgtgcta aaacggctgc cggaaacaag ccgccacggc tcaccgcaat
     8881 aatccctttc cactgtgtgg caggtaataa attttctgcc aacttgcgag cgtgcatatg
     8941 gaacatatcc cacgtcacga catatttttc atttgtgtat ttttcactca tagaaacaac
     9001 ctaatataaa attgggggct accccgatat aaaaaattgc actaggataa cccgaaaatg
     9061 cttttttcgc catcatttca tttatttttt tgtgccggca gctacgcaat cgtatgctta
     9121 gcacaaaaaa ccaacactaa aatagctttt ctaaagtgaa aaagacttcc ttgttttggc
     9181 gagagtaaaa atcagcaata ttgctgtcaa ttttttgata acggaaattc agcttcggca
     9241 caatgccctg ccaatgccaa gtgcggttcc aaaccgctaa attggcttga tattccgtgt
     9301 ctaaccgctt atagccaaac aaatagtgct tgtcggcaaa atatcgcttg ccaaagccga
     9361 tacttgcctg cgttgcccag cgttcgcctt gaaaaaccgc ccccactcga gccagccact
     9421 tattcgagct ttgtgctttt tcccgtgcaa tttcacgcac gccgtctaaa tttgcaaaaa
     9481 accgcccatt tttgaccgct tgccactgca caccgccact gagttggtgc tgatagctgt
     9541 tataacggct tgcggttagc tcctcaaaat accgtttttg caaatgggta aaactccccg
     9601 acaccaacca ttgcgaatta aggtaacgca aaccgttgag tgttgcccca aattgaacat
     9661 tataacggct actccccagc caattttgct caataaaagg cgaaaaagtc agccgataag
     9721 cgacggtgcg gtagctataa ttcggcgaaa cggatacgga ttgctcacgg taatctcggt
     9781 tatcccaata gtaaatcccg ctataattga gcgttaaacc gacaaaatga ttgcctttca
     9841 cgttgtgcaa tttactcaac cctaagccat aacgcacgcc ttttgctgat tgtggcaaac
     9901 tgtctgcatt tttgcggaaa atccgcccat ttacattcac aatcggcgaa gatgaggcat
     9961 tattcacgtt atctgtttgg gtatattgca gataaaaatc gggctgccac gcctcatttt
    10021 cagcaatttg gacttgagta ttgcgggcaa ttttagcaag ttccggcggt aaatgggctt
    10081 gaatagcctt aaattcctgc tctgccgcac gaaattgctg atcttctgcc aaaatcaacg
    10141 ccaaatcaaa acgagggtaa accaaactcg ggggcttagc taacagttgg cgatagtgaa
    10201 aaactgcggt ttgatgatct tttttcgcat aggcaagtgc ggcttgcgca tagtgccaca
    10261 acaacgggtc aaaattttca gtttgcggat aacggcttaa aagcggttca agcgttgccc
    10321 aatcttggct gagaatcgct tggttaattt gctgttcaac attctgattg actgaatacg
    10381 caggctgata agcggtcggt ttttgtgaat tttttacaac attttgctca aatttaaccg
    10441 cttgcggctg acgctcaaag gaaatcgggt cagtgttgtg ttcaatcacc ttttctgccc
    10501 atacaacggg gctgaacagc gaaaataaaa ggggatattt tttcataaag ataaagaaaa
    10561 ttggtagggg cggacctata tgttcgcctc tacgggattt atcactctct ccccttgtgg
    10621 gagagggtta ttagaagctg taaattgaaa tctaaactat tgtgtcttat ggtatctaca
    10681 agcaatatca agacaaatgc cgtttaattt ttcgttaaac ggcattgaac gttagaaaag
    10741 gttatttttg gatatcgcca cgagtgccgg caagtccaaa attactcact tccccagtaa
    10801 gatttgcttt tgtctgaatt tcaccggcaa tttcctctgc atttttaccg aaaaattcga
    10861 ctgtatattt tccagaaagg tttaaaggat tattgccatg tactgttgaa gaaatctgag
    10921 tattattaat cgtcccctct tctaatacga ttaagtttcc aaattctccc tcaactctac
    10981 ctgaaccggt acgcttagag aaattaacat tataggttag atcaccacca ttaaaacctt
    11041 tagctccatc gtggttaaat gcttttcctg aatatgttgc agtaccctct gttggtaatt
    11101 tctctgtttt caatccttta actgtaactg ttccatcaac tttatcaata taattaccgt
    11161 tttcccagcc atttctttga actgcttgtg ctgttactac agaatatggc tgattatata
    11221 aataactctg tgttctgact gtgactttac cctcaatagt ttctttacta ttaccaagtt
    11281 ttaagccgta atttgtatca tcaatacctt ttgctttaat aatagctata ggatctactt
    11341 ctttttctgc
//
LOCUS       DANMBQ010000081        11326 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.081, whole genome shotgun sequence.
ACCESSION   DANMBQ010000081 DANMBQ010000000
VERSION     DANMBQ010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11326
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.081"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            214..2010
                     /locus_tag="PXE92_001747"
     CDS             214..2010
                     /locus_tag="PXE92_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate-specific subunit IIBC"
                     /protein_id="HDL5760970.1"
                     /translation="MDFLTEILLFLKDQVLNKAPFLLGIVACLGYILLKKDTSTIIKG
                     TIKTIVGFMIVQAGSGFLVTNFKPVIDGLAKYHQLTGAVIDPYTSMQSTIQTMGENYA
                     WVGYAVIGALFLNILLVVFRRLTGIRTIMLTGHIMFQQAGLVAVFYMIIGASMWETII
                     YTSVLMALYWGISSNIMYKPTQAVTGGAGFSIGHQQQIASWIAVKLAPKLGDKDDTVD
                     KMKLPNWLNIFHDSISATALVMTIFFGIILLSFGLDNLKELAGKTNQFMYILEMGLKF
                     AVAIQIIVTGVRMFVAELSEAFKGIAERLIPNSVLAIDCAAIYAFSPNAMVFGFMWGA
                     IGQFVAVGGLLAVGSPVLIIPGFIPMFFSNATIGVFANQFGGWKAVMKICFVMGIIEV
                     LGSAWVIQMLASQGTTFNGWMGMADWALFFPPILQGIISIPGFFFVIVAAAMVYMFFA
                     SKQLRAEEAEAAARGITLEQLDGYGLDEVKAEPKAEAVVQQAVENAENSANPIRILAV
                     CGSGQGSSMMMKMKIKGYLDKRGIPNIMDSCAVTDYKGKLSEVDIIVSSKHLANEIEV
                     PEGKAVLGVQNMLNPNSFGDELVELINQHNAK"
     gene            2090..3151
                     /locus_tag="PXE92_001748"
     CDS             2090..3151
                     /locus_tag="PXE92_001748"
                     /inference="COORDINATES: protein motif:HMM:NF012376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5760971.1"
                     /translation="MKKILSTLFMLSAVSVAVAKEVNIKLLGTSDVHGRVVPWSYGAD
                     VEDKSGSFAQIATYVKEVRANHKNVLLFDIGDAIQDNQVEEFAKTLDKAKNNPVPKVL
                     NAMNYDIFILGNHEFNFGMPNLDAILKDINAKILTANFYHKDGKRYVEPTTIIERDGV
                     KLGIIGLTTPMSAIFEKDTGHLDAMKFTSPIEEAKAQIADLKAKGVDAIIVLAHMGIE
                     NENNIPDTGVADLVNAVDGIDVIIAGHMHKDVPSETIKNTLITEPHRYGTVVSEVDLA
                     FDVNDKGEVKLLSKTAKTVPVKKLASDPEIEKIYQPYHNELRALNNVKIGETAQDLIP
                     QGKITVYRLLSRKTPECPH"
     gene            3139..3603
                     /locus_tag="PXE92_001749"
     CDS             3139..3603
                     /locus_tag="PXE92_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HDL5760972.1"
                     /translation="MSSLIHDVQQHYSGADVVSFAFDYETVRLDKGDIKKKDIIYNYR
                     YAGGDVSMYELTGKQLKQYMEWSADYFDTIQAGDKDYRYNAVRGKSKYVTFDLFGGVS
                     YNIDLRNPSGSKIVDLKLANGSLITDDGKYKVGMNSYRFGQLTKKGGIWEGQ"
     gene            3634..3750
                     /locus_tag="PXE92_001750"
     CDS             3634..3750
                     /locus_tag="PXE92_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ser/Thr protein phosphatase"
                     /protein_id="HDL5760973.1"
                     /translation="MGAEKGTIQNMLIDYITNVKGGKIEGKSHNRWAIIGLN"
     gene            3766..4233
                     /locus_tag="PXE92_001751"
     CDS             3766..4233
                     /locus_tag="PXE92_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5760974.1"
                     /translation="MNLKQSLIENNSILLNQSAANWEDAIKIGTDLLVKAGTIEPRYY
                     DNIVSKIKEMGPYIILAPGLAMPHARPEEGVIKTSFALVTFDTPIYFEGEDEPVHVML
                     TLAGSDSDQHMQGLVEITQVLDDPESDTGVDLDKIRRCKTAEEVYAVIDQALA"
     gene            4288..4968
                     /locus_tag="PXE92_001752"
     CDS             4288..4968
                     /locus_tag="PXE92_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HDL5760975.1"
                     /translation="MSKPLLQIALDSLSLEKAVADAKQAENQVEIIECGTILAFAEGM
                     KAVSTLRVLHPNHIIVCDLKTTDGGAILAKMAFEAGADWLTVSAAAHPATKAACKKVA
                     DEFNAAHPELKVKKEIQIEIYGNWTVEKDAKEWVELGVTQAIYHRSRDAELAGKGWTT
                     EDVELMKQLSDLGIELSITGGIVPEDIHLFKEIKNAKAFIAGRALVGEKGKQTAEAIR
                     VEIDKYWN"
     gene            complement(5036..6178)
                     /locus_tag="PXE92_001753"
     CDS             complement(5036..6178)
                     /locus_tag="PXE92_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HDL5760976.1"
                     /translation="MKIVIAPDSFKESLTALEVAQAIQQGFARVFPEAEYQLVPMADG
                     GEGSVQSLVDATHGSLQKISVIAPLANEVEGFFGLSGDQKTAFIEMAAASGLHLVPME
                     QRNPLVTTSYGTGQLIKAALDLGVEKIILGIGGSATNDGGVGMLQALGAKFLNAEQRE
                     IGFGGEALSQIQQIDLSGLDSRLKQVEFEVACDVDNPLCGERGASAIFGPQKGATPEM
                     VKMLDHALLHFAETVKSQLGIEIAEKAGAGAAGGMGGGLLLLPNVTLRSGVQIILEAT
                     DLAEKLADADLVVTGEGRMDAQSIAGKTPIGVAKVAKQFGKPVIAIVGSLKEDYPVVY
                     QHGIDAVFPIIRQVSNLEAVLKSGKENLISTAENVARLWKISALQE"
     gene            complement(6188..7567)
                     /locus_tag="PXE92_001754"
     CDS             complement(6188..7567)
                     /locus_tag="PXE92_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL5760977.1"
                     /translation="MSGIALILIFLVAIIIMIYMIAKWKVHPFLALMSISIALALVAG
                     LPLAKIPTIVGEGFSNTFKSIGIVIIFGAIIGTILEKTGAALKLADMVVKVVGQKRPE
                     LAMLIMGWVVGIPVFCDSGFVVLNPIREAIRKKILANPVGMAVALSAGLYASHVFIPP
                     TPGPIAAAGAVGLSHNLLLVIGMGFVVSIPVLIASYFFAKYVGKQVSVMEEAQADQVI
                     SQSYEDLIKQYGKLPSGFLSFAPIFMPIILMAIGSIAKIAGVSGDFGVFLQFVGNPII
                     ALAIGVIFAIFLLVSSGKMAEFDSLTNDTLKLVGPILFITAAGGVLGNVITQAGFVDY
                     IKQNAHIISTAGIFFPFLISAILKTAQGSSTVAIITTASIMGMFNAPDSLMNALGLTS
                     EMAAALTVMAIAAGSMCVSHANDSYYWVVTNFTKLTPQQGYRTQTTLTFIMGVVGMLT
                     VYLLSLILL"
     gene            complement(7689..8783)
                     /locus_tag="PXE92_001755"
     CDS             complement(7689..8783)
                     /locus_tag="PXE92_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5760978.1"
                     /translation="MKLNQAIADRIVKRTMQIIPNSVNVMDSEGVIIASGDVGRIGQR
                     HTGAVIALRNDQAVEIDENLAKQWCDEVKAGINLPLHYLGSTIGVVGISGQPQQVRQY
                     AQLVKMAAELIMQQAFELEQERWQRRYREEFVRALLKGSLSTAEIQQQAVFFGQDFAK
                     PLSVMVIKIHGSTAEKLQRLIDFFEHYFPSLLTAVIGLDKIALLNHLSNEKSLIRNAL
                     NKLNDPDISFKTVVGLAVENLSQTHISYQTACHTLNYAEQIQSRKQIIHFEDFKLPAL
                     LHSFSHSWEAKTLLSPFQALLVSDKKQVLLKSLRYYFFANCDLDHAAKKLFIHPNTLR
                     YRLEKIEQITGLSFNNIEQKFVLYLGAVLS"
     gene            complement(8887..9339)
                     /locus_tag="PXE92_001756"
     CDS             complement(8887..9339)
                     /locus_tag="PXE92_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HDL5760979.1"
                     /translation="MNLKAVAVSALAMSSVAMADIADVKPVVFESKFDFQTTVTTLTN
                     TLKEKGMTIFAEIDHQAAAKQAGLEMQPATVLVYGTPKAGTPLMVKDPMLALQLPLKV
                     LITEPNKGKVEVMLNRADQVVAHANTDYADVENNLAKAEKLIKATVAK"
     gene            complement(9360..10112)
                     /locus_tag="PXE92_001757"
     CDS             complement(9360..10112)
                     /locus_tag="PXE92_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HDL5760980.1"
                     /translation="MHFEKRSHWSGELGREMSFNVYGHAGKPVIVFPSSGGNENEYGN
                     FGMIEACRSFIERGLIKFYTPDSYDAESWLSKHKSGHDMALAHNAYDRYIIHELVPLI
                     RHESHWNGTMIATGCSMGAFHTVNFALRHPDLFDIAIALSGVYDARFFSGEFYGDKAV
                     YFNSPIDYVWGQNDDWFLDRYRQNHYVIAVGQGAWEEQHIEDTRRLQEAFNAKGIDAW
                     FDYWGFDIDHDWPTWRKQMPYFLGKLEEQGII"
     gene            complement(10123..11307)
                     /locus_tag="PXE92_001758"
     CDS             complement(10123..11307)
                     /locus_tag="PXE92_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HDL5760981.1"
                     /translation="MSRPLNFVMISPHFPTNFETFAIRLREAGFNTLGIADAPYESLS
                     ENLRHSLTEYYRVDNMEDYEQVYRAVAYFAHKYGRIDRIESHNEYWLELDAKLRTDFN
                     VFGYKSDDMLSIKTKAQMKEVFRKTGLKVAQGRVFKDDEDARKLAKQLKFPVIIKPNS
                     GVGASDTYKIKTAEELEAFFGYKTPTVEYIMEEFIDGDIITFDGLTDKEGNIVFYSSL
                     EYSEAVLDTVSKDGDMFYYVPCEISPKLVEMGKQCVKAFNVKERFFHFEFFRVKGSKK
                     EELLPLEINCRPPGGLTIDMWNYANDFDVFREFANIVKENKFYADIQHPWNVVYISRK
                     ANQNYVNSIEAVCEKFAGNIISVQSVPGVFAKVMGEQGILARTETMEQMREIAQFAQA
                     KQ"
BASE COUNT         3268 a         2600 c         2361 g         3097 t
ORIGIN      
        1 agcatatatg agctaattta aagaataatc tttaataatc acgaataaat atatttttct
       61 tcctccatga cgagattata aaaataaaat gtgatctcgc tcacaaataa ttaaaaataa
      121 tcttttttaa tctttttcta gcgtttatca ttaattccga caacttctct ggagtttttt
      181 agttctatta atctctcaac aaagaggccc cctatggact ttttaaccga aattctcctt
      241 ttcttaaagg atcaagtgct gaataaagca cccttcttac taggtatcgt agcttgctta
      301 ggttacattc ttcttaaaaa agacacttct acgattatta aaggcacaat taaaacaatt
      361 gtcggtttta tgattgtaca agccggttca ggtttcttag taaccaactt taagccggtt
      421 attgatggct tagccaaata tcaccaactt accggtgcag taattgaccc ttacaccagt
      481 atgcaatcga ccattcaaac catgggcgag aactacgctt gggttggtta tgccgtaatt
      541 ggggcgctgt tcctcaatat tctattagtg gtgttccgcc gtttaaccgg tatccgtacc
      601 attatgctca ccggtcacat tatgttccaa caagcaggct tggttgcggt gttctatatg
      661 atcatcggag cgtcaatgtg ggagaccatt atctacacct cagtgttgat ggctctttat
      721 tggggtattt cgtctaatat tatgtataaa ccaacccaag cggtaacagg cggtgcaggc
      781 ttctcaattg gtcaccaaca acaaattgct tcttggattg cagtcaaact cgcaccaaaa
      841 cttggcgata aagacgatac tgtagataaa atgaaattgc ctaactggct caatattttc
      901 cacgacagta tttctgcaac cgcattagta atgaccatct tctttggaat catcttactt
      961 tcattcggtt tagataacct caaagaactt gctggcaaaa ccaaccagtt tatgtacatt
     1021 cttgaaatgg gcttgaaatt tgcggtggca attcaaatca ttgtaaccgg cgtacgtatg
     1081 tttgtagctg agctttcaga agccttcaaa ggtattgctg aacgcttaat tccaaactca
     1141 gtattagcga ttgactgtgc cgctatctac gctttctcgc caaatgcgat ggtattcggc
     1201 tttatgtggg gggctatcgg tcaatttgtg gcagtaggcg gcttgcttgc agtaggctca
     1261 ccggtgctta ttattccggg ctttatcccg atgttcttct ctaacgcaac cattggtgtg
     1321 tttgcaaacc aatttggtgg ttggaaagca gtaatgaaaa tctgttttgt gatgggtatt
     1381 attgaagtgc ttggctcagc ttgggttatt caaatgcttg cttcacaagg cacaaccttt
     1441 aacggttgga tgggtatggc tgactgggca ttgttcttcc caccaatcct acaaggtatt
     1501 atcagcattc cgggcttctt ctttgtaatt gtggcagcag caatggttta tatgttcttc
     1561 gcatctaaac aacttcgtgc cgaagaagca gaagcggcag ctcgtggcat tacacttgaa
     1621 caattagacg gctacggctt agatgaagta aaagcagaac caaaagcgga ggcagtagta
     1681 caacaagcgg tcgaaaatgc cgaaaattct gcaaacccaa tccgcattct agcggtgtgt
     1741 ggctctggtc aaggctcatc aatgatgatg aaaatgaaga tcaaaggcta tctcgacaaa
     1801 cgtggtattc cgaatattat ggattcctgt gcggtaactg attacaaagg caaattaagc
     1861 gaggttgata ttattgtctc cagcaaacat ttagccaacg aaatcgaagt accggaaggc
     1921 aaagcggtat taggtgtaca aaatatgcta aatccaaact catttggtga tgaattagtt
     1981 gagctaatca atcagcataa tgcaaaataa gtaagtttag gggtgaataa tcacccctat
     2041 ctatgctaaa gattgtaaaa actcacttca tcaaacgagg aattatccaa tgaaaaaaat
     2101 cttatccacc ctgtttatgc tctccgcggt tagcgttgcc gttgccaaag aggtaaacat
     2161 taaactactt ggtacctcag acgttcacgg acgtgttgtg ccgtggagct acggggcaga
     2221 cgtggaagac aaatccggct cattcgccca aattgcaacc tatgtcaaag aggtgcgtgc
     2281 caaccacaaa aatgtgttgc tgtttgatat tggcgatgcg attcaagaca accaagtcga
     2341 agagttcgct aaaaccttag acaaagcgaa aaacaatccc gtgccgaaag tgctgaatgc
     2401 aatgaattac gacatcttca ttctcggcaa ccacgaattt aacttcggaa tgccgaattt
     2461 agatgcgatt ttaaaagaca tcaacgccaa aattctcact gccaacttct atcacaaaga
     2521 cggcaaacgc tacgttgagc caactaccat cattgaacgt gatggcgtaa aacttgggat
     2581 tatcggctta accaccccaa tgtcggctat ttttgaaaaa gacaccggtc atttagacgc
     2641 aatgaagttc acttcgccga ttgaagaggc gaaagcccaa attgccgatc tcaaagccaa
     2701 aggcgtggac gccattattg tgctggcaca tatggggatt gagaacgaaa acaacattcc
     2761 cgacaccggc gtggcggatt tagtgaatgc agtggacggt attgatgtaa ttatcgccgg
     2821 ccatatgcat aaagatgtgc cgagtgaaac tatcaaaaat accctgatta ccgaaccgca
     2881 ccgctacggc acagtggttt ccgaagttga tcttgccttt gatgtgaatg acaaaggcga
     2941 agtgaaacta ctttctaaaa ccgccaaaac cgtaccggtg aagaaactcg caagcgatcc
     3001 ggaaatcgaa aaaatttacc aaccgtatca caatgaactg cgtgccttaa acaacgtcaa
     3061 aatcggtgaa actgcacaag atttaatccc acaaggcaaa atcacggtgt atcgattgct
     3121 ttctcgcaag acaccggaat gtcctcattg atccacgatg tgcaacaaca ttacagcggt
     3181 gcagacgtag tgagttttgc atttgactac gaaaccgtgc gtttagacaa aggcgacatc
     3241 aagaaaaaag acatcatcta caactaccgc tatgccggtg gcgatgtgag catgtatgag
     3301 ctaaccggca aacagcttaa acagtatatg gaatggtcag cggattactt cgacaccatt
     3361 caagccggtg acaaagacta ccgctacaac gctgtgcggg gtaaatctaa atacgttacc
     3421 ttcgacctat tcggcggcgt aagctacaac atcgacctac gcaatccaag cggtagcaaa
     3481 attgtcgatc taaaactggc aaacggcagt ctaatcaccg atgacggcaa atacaaagtg
     3541 ggaatgaact cctaccgctt tggtcagctc accaaaaaag gcggcatctg ggaaggacag
     3601 taaatccccg tgatttggga atccaaagtc gccatggggg ctgaaaaagg cacaatccaa
     3661 aatatgctga ttgattacat caccaacgtc aaaggcggaa aaatcgaagg caaatcgcat
     3721 aaccgctggg cgattatcgg cttaaattaa cgaaagggaa acactatgaa cttaaaacaa
     3781 tctcttattg aaaataactc tattttgctc aatcaatcag cggcgaattg ggaagacgca
     3841 atcaaaatcg gcactgattt attagtcaaa gccggtacga ttgaaccacg ctattacgat
     3901 aatattgtaa gcaaaatcaa agagatgggg ccttatatta ttcttgcacc gggcttggca
     3961 atgcctcacg cccgtccgga agaaggtgtg attaaaacct ctttcgcttt agtgactttt
     4021 gacaccccga tttattttga gggcgaagat gagccggttc acgttatgct aacccttgca
     4081 gggagtgact ctgatcagca tatgcaaggc ttggtagaaa tcacccaagt gctagatgac
     4141 ccagagagcg acacaggtgt tgatttagat aaaatccgcc gctgtaaaac ggctgaagaa
     4201 gtgtatgcag taatcgatca ggcattagcc taatattcta caagcggttc aaaaacatca
     4261 atattttgca aatagaggaa tacaattatg tccaaaccat tattacaaat tgcccttgat
     4321 tctctttcac tggaaaaagc ggtggcggat gcaaaacaag cagaaaacca agtcgaaatt
     4381 attgaatgcg gtactattct tgcttttgct gagggtatga aagccgtttc caccttgcgt
     4441 gtattgcacc caaatcacat tattgtgtgc gacttaaaaa ccaccgatgg cggtgcaatt
     4501 ttagctaaaa tggcatttga agccggtgcc gactggctca cggtttcggc tgcggctcac
     4561 cctgcaacca aagcggcttg caaaaaagtg gcggacgaat ttaacgctgc tcacccggag
     4621 ctaaaagtga aaaaagagat tcaaattgaa atctacggca actggacggt ggaaaaagat
     4681 gccaaagagt gggtagaatt aggggtaacc caagcgattt accaccgctc ccgtgatgcg
     4741 gaactagcag gtaaaggttg gacaacggaa gatgttgagt taatgaaaca gctttctgac
     4801 ttaggcattg aattatctat caccggcggt atcgtaccgg aagatattca cctgttcaaa
     4861 gagatcaaaa acgccaaagc ctttattgca ggccgtgctt tagtcggtga aaaaggcaaa
     4921 caaactgccg aagccattcg tgtggagatt gataaatact ggaactaatc cggcattgaa
     4981 acccaataaa aatggcgttc tctcaaccgg aacgccattt tttatctcat tttttctatt
     5041 cttgcaaggc cgatattttc cacaatctcg ctacattttc ggcagttgaa atcaggttct
     5101 ctttgcctga ttttaacacc gcttctaaat tgctgacctg tcgaataatc ggaaataccg
     5161 catcaatgcc gtgttggtac accacagggt aatcttcttt caatgagcca actatcgcaa
     5221 tcaccggctt gccaaactgc ttagcgactt tcgccacccc aatcggggtt ttaccggcga
     5281 tagattgagc gtccattcgc ccttcccctg tcaccaccaa atccgcatcg gcaagtttct
     5341 cagcaagatc ggttgcctca agaataattt gcacgccgga acgtaatgtt acgttaggca
     5401 gtagcagtaa accaccgccc attccaccgg ctgcaccggc accggctttc tcggcaatct
     5461 caatgcctaa ttgggatttt acggtttcgg caaaatgcaa cagggcgtgg tcgagcattt
     5521 taaccatttc cggtgtagct cctttctgtg gcccaaaaat tgccgaagcc cctcgctcgc
     5581 cacacagcgg attatcgaca tcgcaagcaa cctcaaattc cacttgcttt aagcgtgaat
     5641 ccaaaccgct taaatcaatc tgctgaattt ggcttaatgc ctcgccacca aagccgattt
     5701 cccgctgttc ggcatttaga aatttcgctc ctaaggcttg tagcattccg acaccgccat
     5761 cgttagtcgc actgccgcca atgccgagaa tgattttttc cacccctaaa tctaaggcgg
     5821 ctttaattaa ctgccccgtg ccgtagctgg tggtaaccag cggatttcgt tgctccattg
     5881 gcactaaatg caagccactt gccgccgcca tttcaataaa ggcggttttt tgatcccccg
     5941 acaagccaaa aaagccctcc acctcatttg caagcggtgc aattacgctg attttttgca
     6001 aactgccgtg agtggcatca accagcgact gtaccgagcc ttcgccaccg tctgccatcg
     6061 gtacgagctg atactccgcc tcagggaaaa cacgggcaaa accctgttga attgcttgag
     6121 ccacttctaa tgcggtcaaa ctctctttaa atgaatccgg tgcaatcaca attttcatcg
     6181 tcaatcctta gagtaaaatc aatgaaagca gataaaccgt gagcataccc accacaccca
     6241 taatgaaagt tagggtagtt tgcgtacgat agccttgttg cggagtcagt ttagtaaagt
     6301 ttgttaccac ccagtagtag ctgtcattgg cgtgggaaac gcacattgag ccagccgcaa
     6361 tcgccattac ggttaaggct gccgccattt cactggttag ccctaaggcg ttcattaatg
     6421 agtccggtgc gttgaacatt cccataatgg aggcggtggt gataattgcc accgttgagc
     6481 tgccttgtgc ggtttttaaa attgccgaaa tcaggaacgg gaagaaaatc cctgctgtac
     6541 tgataatatg agcgttttgc ttgatgtaat ccacaaagcc ggcttgagta atcacgttac
     6601 ctagcacacc accggcggcg gtaataaaga gaattgggcc gactaatttc agggtatcat
     6661 tggttaagct gtcaaattcc gccattttac cgcttgaaac cagtaggaaa atagcgaaga
     6721 tcaccccaat tgctaacgca ataatcgggt tgccgacaaa ttgtaggaat acgccgaaat
     6781 cgccacttac accggcaatt ttggcaatcg agccgatagc cattaagata atcggcataa
     6841 aaatcggggc aaagcttaaa aacccacttg gtaatttgcc gtattgtttg atcagatctt
     6901 catagctttg gctgattact tgatccgctt gagcttcttc catcacgctg acttgtttgc
     6961 caacatattt ggcaaagaag taactggcaa tcaacacagg aatcgaaacc acaaagccca
     7021 ttccgatcac aagcaggaga ttatggctta aaccaacagc accggctgct gcaatcgggc
     7081 ccggtgtcgg aggaataaag acgtgggagg catataaacc ggcacttaac gccaccgcca
     7141 ttcccaccgg attggcaaga atttttttgc gaatagcttc acgaatcggg tttaacacca
     7201 caaagccgct atcacagaac actgggatac caaccaccca gcccataatc aacattgcca
     7261 gttcagggcg tttttgcccc accactttta ccaccatatc ggctaatttg agggctgcac
     7321 cggttttttc taaaatcgtg ccgataatcg ccccaaaaat aatcacgata ccgatacttt
     7381 tgaaggtatt actaaaacct tcgcccacaa tagttggaat tttggcaagc ggtaaacctg
     7441 ccactaatgc aagggctatc gaaatcgaca ttaaggctaa gaacgggtga actttccact
     7501 tcgcaatcat ataaatcatt atgatgatag cgaccagaaa gatcagaata agtgcaatac
     7561 ctgacataat aagtctcctc attgtagaaa aatgaactta ttattcggta tttattgcta
     7621 aaaagattta gataaatttg caaaaaattt gttaaaaacg accgcttgtt tgtatatttt
     7681 tacaattttt acgacagaac cgctccaaga tacagcacaa atttttgctc tatgttattg
     7741 aaagataaac cagttatctg ctcaatcttc tctaaacggt aacgtagcgt atttgggtga
     7801 ataaacaatt ttttggcagc gtgatccaga tcacaatttg cgaaaaaata gtaacgcaga
     7861 cttttcagta acacctgttt tttatcggaa accagtaaag cttggaacgg cgagagcaag
     7921 gttttcgctt cccaagagtg gctgaaactg tgcaagaggg ccggcagttt aaaatcttca
     7981 aaatgaataa tctgcttacg gctttggatc tgctcggcat aattgagggt atggcaggcg
     8041 gtttggtagg aaatatgggt ttgcgataaa ttttcgaccg ccagcccaac caccgttttg
     8101 aaggaaatat ccggatcgtt aagtttgttt agtgcattgc ggattaacga tttttcgttg
     8161 gataaatgat tcagcaaggc aattttatct aacccaatca cggcggtgag taggctcggg
     8221 aaataatgtt cgaaaaaatc aatcaggcgt tggagttttt ccgcagtaga gccgtgaatt
     8281 ttaatcacca tcaccgacag cggttttgca aaatcttgcc cgaaaaagac cgcttgttgc
     8341 tggatttctg ctgtgcttag gctacctttg agcaaggccc gcacaaactc ttcccgatag
     8401 cggcgttgcc aacgttcctg ttccaactca aacgcttgct gcataatcag ctccgccgcc
     8461 attttcacca attgagcata ttgccgaact tgttgtggct gccctgaaat ccccactaca
     8521 ccaatggttg agcctaaata gtgaagcggt aagttaatgc ccgctttcac ttcatcgcac
     8581 cactgttttg caagattttc atcaatttcg accgcttgat cgttgcgtaa cgcaatcacc
     8641 gctcctgtgt gtcgttgccc gatacgaccg acatcgccgg aagcaataat caccccttca
     8701 ctatccatca cattgacgga gttgggaata atctgcatcg tgcgcttgac gatgcggtcg
     8761 gcaatcgctt ggttgagttt cattatatga ttcctactca ttcccaatac tatgaaaaat
     8821 ccctctttcg agggatttgc aaattatcta cgcttccact tcctgagaat agatcatagc
     8881 gtgaagttat tttgccacag tcgctttaat taatttttcc gctttggcaa ggttgttttc
     8941 tacatcagca taatcggtat tagcgtgagc caccacttga tcggcacgat ttaacattac
     9001 ttcgaccttg cccttgttcg gttcggtaat taacactttt aacggtaatt gcaacgctaa
     9061 catcggatct ttcaccatta atggcgtacc ggctttcggt gtgccgtaaa ccaatacggt
     9121 tgccggttgc atttctaagc cggcttgttt tgccgccgct tggtgatcga tttcggcaaa
     9181 aatcgtcatt cctttttctt ttaaggtgtt ggttaaagtt gtgactgtag tttggaaatc
     9241 aaatttactt tcaaatacca ccggtttgac atcggcaata tctgccattg ccacgctgct
     9301 cattgctaat gcagaaactg cgactgcttt taagttcatt tcttttctcc tcaaatagat
     9361 taaataatcc cttgttcttc caacttgcct aagaaataag gcatctgttt acgccaagtc
     9421 ggccagtcat ggtcaatatc aaagccccag tagtcaaacc aagcatcgat cccttttgcg
     9481 ttaaaagcct cttgtaatcg gcgggtgtct tcaatatgct gttcttccca cgcaccttgt
     9541 ccgactgcaa tcacatagtg attttggcgg tagcggtcta agaaccaatc gtcattttga
     9601 ccccatacat aatcaatcgg cgagttaaaa taaaccgctt tatcgccata aaactcacca
     9661 ctgaaaaagc gagcgtcata aacaccgctt aaggcgatgg caatatcaaa cagatccgga
     9721 tgacgtaagg caaagtttac cgtatggaaa gcccccatac tacaaccggt ggcaatcatc
     9781 gtgccgttcc agtgcgattc atggcggatt aacggcacta gctcgtgaat aatataacgg
     9841 tcgtaagcat tatgagctaa tgccatatcg tgtccggatt tatgtttaga taaccaagat
     9901 tccgcatcgt aagaatcagg cgtgtaaaat ttgattaagc cacgttcaat aaaggaacgg
     9961 caagcctcaa tcattccaaa attaccatac tcgttttcat tgccgccgga ggaagggaaa
    10021 acaataaccg gtttacctgc gtgtccgtaa acgttgaacg acatttcacg acctaattct
    10081 ccactccagt ggcttctttt ttcaaaatgc atacttcacc tcttactgtt tagcttgtgc
    10141 aaattgtgca atttcacgca tttgctccat tgtttcggta cgggctaaaa tgccttgttc
    10201 gcccatcact ttggcaaata cgcccggtac gctttgcacg ctgataatat tgccggcaaa
    10261 tttctcacaa acagcttcaa tcgaattcac ataattttgg tttgccttgc gggaaatata
    10321 aaccacgttc caagggtgct gaatatcggc atagaatttg ttttctttca caatattggc
    10381 aaattcacgg aacacatcga aatcgttggc gtagttccac atatcaatag ttaagccacc
    10441 cggcggacgg cagttgattt cgagtggtaa caactcttct tttttgctcc ctttaacacg
    10501 gaagaactca aaatggaaaa aacgctcttt tacgttaaag gctttcacac attgtttgcc
    10561 catttccact aattttggcg aaatttcaca tgggacatag tagaacatat cgccatcttt
    10621 tgaaacggta tctaataccg cttctgaata ttcaaggctg gagtagaaaa cgatattgcc
    10681 ctctttatcg gttaaaccgt caaaggtaat aatatcgccg tcaataaact cttccataat
    10741 atattcaacc gttggcgttt tataaccgaa gaaagcttct aactcttccg cagttttgat
    10801 tttgtaagta tcgcttgccc caacccctga atttggcttg ataatcaccg ggaatttaag
    10861 ctgttttgct aatttgcggg catcttcatc atctttaaat actcgccctt gtgccacttt
    10921 caagccggtt ttgcggaata cctctttcat ttgggctttg gttttaattg agagcatatc
    10981 atcgctctta taaccaaaca cattgaaatc ggtacgcaat ttcgcatcta actccagcca
    11041 atattcattg tgcgattcaa tgcggtcaat tcgcccgtat ttatgggcaa agtacgcgac
    11101 cgcacgataa acttgttcgt aatcttccat attatctaca cgataatatt cagtcaggga
    11161 atgacgcaga ttttcgctca atgattcata aggggcatct gcaattccca atgtattaaa
    11221 accggcttca cgcaaacgaa tggcaaaggt ttcaaagttc gttgggaagt gcggggaaat
    11281 catcacaaaa ttaagtggtc tagacatagt tcttccttta taaagt
//
LOCUS       DANMBQ010000082        11259 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.082, whole genome shotgun sequence.
ACCESSION   DANMBQ010000082 DANMBQ010000000
VERSION     DANMBQ010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11259
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.082"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(145..492)
                     /gene="frdD"
                     /locus_tag="PXE92_001759"
     CDS             complement(145..492)
                     /gene="frdD"
                     /locus_tag="PXE92_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HDL5760982.1"
                     /translation="MSLDQNPKRSNEPPVWLLFSAGGMVSALFFPVVIFIIGLLLPFG
                     LVSPDNIISFAHTWIGKLAIMVLAIFPMWAGMHRIHHGLHDLKVHTPAGNVIFYGLSI
                     LYTILVIIAVVQI"
     gene            complement(506..898)
                     /gene="frdC"
                     /locus_tag="PXE92_001760"
     CDS             complement(506..898)
                     /gene="frdC"
                     /locus_tag="PXE92_001760"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HDL5760983.1"
                     /translation="MSATKRRPYVRGMKASWWKKLDFYKMYMVREATCLPTVWFCIVL
                     FYGAVALSKGTFTTDFVDFLQNPLVVILNIISLAAMLYHAATLFVMTPAVMSVMVKGK
                     HLPVSVGRNILWAATGVISVIALILVYI"
     gene            complement(908..1639)
                     /locus_tag="PXE92_001761"
     CDS             complement(908..1639)
                     /locus_tag="PXE92_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005639269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HDL5760984.1"
                     /translation="MANLDKMTIEVLRYNPESDSEPHLDRYEVPYDSQTSLLDALGFI
                     KDELEPELSYRWSCRMAICGSCGMMVNGKPKLACKTFLRDYSGFMRIEPLANFPIERD
                     LVVDLSHFIDSIEAIKPYIIDNKAPEGQRTKQTPAQLEKYRQFSMCINCGLCYAACPQ
                     FGLNPEFIGPAAITLAHRYNLDNRDNGREERMKLLSSKNGVWSCTFVGYCSEVCPKHV
                     GPASAVNQGKLESAKDYVISMIKPR"
     gene            complement(1655..3457)
                     /gene="frdA"
                     /locus_tag="PXE92_001762"
     CDS             complement(1655..3457)
                     /gene="frdA"
                     /locus_tag="PXE92_001762"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HDL5760985.1"
                     /translation="MQSVNFDVAIIGAGGGGLRAAIAAAEANPNLKIALISKVYPMRS
                     HTVAAEGGSAAVIKDTDSFDNHFNDTVGGGDWLCEQDIVEYFVEHSPIEMTQLERWGC
                     PWSRREDGEVNVRRFGGMKIERTWFAADKTGFHILHTLFQTSIKYPNIVRFDEHFVLD
                     ILTDNGEARGCVAMNMMEGTLVQINANAVVIATGGGCRTYRFNTNGGIVTGDGLSMAY
                     RHGVALRDMEFVQYHPTGLPNTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIG
                     KPENKYMELGPRDKVSQAFWQEWRKGNTLKTAKGVDVVHLDLRHLGEKYLLERLPFIC
                     ELAKAYEGVDPAKAPIPVRPVVHYTMGGIEVDMNAETSIKGLFAVGECASSGLHGANR
                     LGSNSLAELVVFGKVAGENAARRALEVTARNQPQIDAQAKDVVARLHALANQEGNESW
                     SDIRNQMGDAMEEGCGIYRTQESMEATVNKIQELKERYKNISVKDKSSVFNTDLLYKI
                     ELGFILDVAQSIACSAVERKESRGAHQRLDYVERDDVNYLKHTQAYYNAEGTPTIKYS
                     DVKITKSQPAKRVYGAEAEAQEKVKKAAEAQAQQ"
     gene            3790..4773
                     /gene="epmA"
                     /locus_tag="PXE92_001763"
     CDS             3790..4773
                     /gene="epmA"
                     /locus_tag="PXE92_001763"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HDL5760986.1"
                     /translation="MNNLQLDNIDWQPTASIPHLIQRSKIITEIRKFFTDRGLLEVET
                     PILSEFSVTDVHLSTFNTQFQSPFSPEAKTLHLMTSPEYHMKRLLAAGSGPIFQLCKV
                     FRNEEAGKRHNPEFTMLEWYRPHFDMYRLINEVDDLLQQILDCEPAESFSYQFVFQTY
                     VGLDPLSATKAQLVEKARKHGLQCDDDEQRDTLLQFLFSEVVEANIGQERPTAVYHFP
                     STQAALAQISSEDHRVAERFEFYYKGLELCNGFHELDDADEQIHRFEQDNLQREKMGL
                     EPQQLDVRFLAALKAGFPNCSGVALGVDRLLMLAMDAEKIEEVISFGIEKA"
     gene            4855..5745
                     /gene="rarD"
                     /locus_tag="PXE92_001764"
     CDS             4855..5745
                     /gene="rarD"
                     /locus_tag="PXE92_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5760987.1"
                     /translation="MNISGKLQGWHYALLCYLTWGTFPIYWYPINQSGMPAEQILAQR
                     VLWSALFAVFLLLIFQQGRAVINAFKQPKVLGLFVLSSFMIGVNWLVYLWAIVNEHIL
                     DASLGYFINPIFNVFVGRLILKEQLNKAQLLALLFAISGILWLAIPAGQIPWVALILA
                     ASFCIYGLIRKLAPMEPLSGLALETLLMSPFAITYLCFCYHQNILVFSELNPLQMAVL
                     LCSGIATTLPLLWFAMGARRISMSLLGMLQYISPTLQFLCGVLIFNETLSAERAVGYI
                     LVWIGVGVFLLGMKKAGVKR"
     gene            complement(5756..6367)
                     /locus_tag="PXE92_001765"
     CDS             complement(5756..6367)
                     /locus_tag="PXE92_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5760988.1"
                     /translation="MKYEAKPLIISPNHIQQRLHGKLLARALLIIALLMLAKFIYIAS
                     LSNYFTFYLMEKFQLNIAMAQLSLFTFLGAVALGAFVGGPIGDKIGRNAVIWFSFLGM
                     APFALLLPHADLFWTIVCAIFAGFIMSSAFSAMVVYAQEAVPGRVGLISGTMFGLMFG
                     IGGLSAAVLGFFADEYGLESIFKACAYLPLLGFAALGLPKRNI"
     gene            complement(6395..6930)
                     /locus_tag="PXE92_001766"
                     /pseudo
     CDS             complement(6395..6930)
                     /locus_tag="PXE92_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            7122..9131
                     /locus_tag="PXE92_001767"
     CDS             7122..9131
                     /locus_tag="PXE92_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDL5760989.1"
                     /translation="MDLIKKLNTGSTFRVPIFLPSLLFVSFVAVFCIIFPQQAQTSLD
                     TIKNSLFQHFSWFYIFAGSIFFLFLIFLSFSRLGDIKLGADTDEPEFGFGSWIAMLFA
                     AGMGIGLMYFGVAEPILHYLKPVQQNLTEPERMKEAMMTTFYHWGIHAWAIYGVIALA
                     LAYFGFRYKLALTIRSGFYPLLKHRISGFWGHLIDIIALCSTIFGLTTTLGFGVMQVS
                     AGFNNLGLIEQSNFTVLAIIVTVAMALAVLSAVSGVGKGVKILSEINLTLAGLLLIFV
                     IITGPTLLLFSSFTENLGYYFSSLLEMSFRTFAYEPEHQGWLSGWTVLYWAWWASWAP
                     FVGLFIAKISKGRTIREFILGVLFVPSLFNILWMTSFGSSAIWFDQQTAGALAEVSGN
                     TEQLLFTFFEQLPFGSIASFVAVIVISIFFITSADSGIFVLNSIASQGEENAPKWQSV
                     LWGALLAILALSLLYSGGLASLQTMTLIIALPFTFIMLILCIGLWKGLMVDNQYFNKK
                     FSQGSQHWAGKDWKQRLEKIINPSNKQDVRHFFIKVARPAFLELIEEFESYGLIAKMN
                     FTNEQNPKLEFEVVKENLRNFIYGIESVPRELSDLVVGDDNLPNIEQNTIYEPITYFL
                     DGRKGYDVQYMTKEELIADVLQQYERFINLAMDNSHDLMTADFNH"
     gene            complement(9196..9663)
                     /locus_tag="PXE92_001768"
     CDS             complement(9196..9663)
                     /locus_tag="PXE92_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HDL5760990.1"
                     /translation="MKSLKLKIPPPAWFLLCAALMWLVAQYVPVSLPNYQHTAIFFSG
                     LAVAIIGGAVAVSALWVIHQAKTTYSPFRPQHTAKLVTWGIYRKSRNPMYLSLLLGLI
                     AWALWLGAMLAWLVLPLFVWLITYFQIKPEEQILAQKFGTHYAKYCNQVRRWL"
     gene            complement(9665..11239)
                     /gene="murJ"
                     /locus_tag="PXE92_001769"
     CDS             complement(9665..11239)
                     /gene="murJ"
                     /locus_tag="PXE92_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HDL5760991.1"
                     /translation="MSKKLLRSGMIVSFMTLISRILGLIRDIVVATILGTGVSADIFL
                     FANRIPNFLRRLFAEGAFSKAFVPVLAEYNADNDPNKTREFIAKVSGTLGGLVTVVTL
                     VAMIASPVVAALFGTGWFLDWLYDGPNAEKFTQASFLLKITFPYLWFITFVALSGAVL
                     NTIGKFGVMAFSPVLLNVAIIAVALWGRDYFDSPDIALAWGVFLGGLLQFLFQIPFMK
                     KEGLLVKPKWAWKDEGVTKVRKLMIPALFGVSVTQLNLLLNQVIASFLITGSISWMYY
                     ADRLIEFPLGLFGIAISTVVLPSLSRIAKNKELTEIQRGEHFQNTMDWGVRMVLLLGI
                     PAMIGMAVLAQPIIMTMFMRGKFGFEDVLATSYPLWVMCLGLNSYMLISVLANGFYAN
                     QNTKTPVKVGIIAALSNICFGLAFAPFLGYIGLALASACSALVNVSLLYVNLSKNGYY
                     KVSHKTVLFVLKLFIAACVMGALVAYFTPEIELWALMTMWQKVYWLIWLMILAGGSYF
                     ASILVLGIRKKDFRSA"
BASE COUNT         3299 a         2524 c         2196 g         3240 t
ORIGIN      
        1 atcttttttg cagatattta atacaaaacg atcgttttat cggcaaaatt tctaatattt
       61 gcaaattttc ttataaattc gaccgcttgt tagcatatta aaaatgaaaa gaccatctgc
      121 tttatacaag atggtctttc tcatttaaat ctgcacgact gcgatgatta ctagaattgt
      181 gtataagata gacaatccgt agaaaatcac attacctgct ggcgtgtgaa ctttcaggtc
      241 gtgtaatcca tgatggatac ggtgcattcc tgcccacata gggaaaatcg ctaataccat
      301 aatagcgagc ttgccgatcc aagtatgggc aaaggaaatg atattatctg gtgatactaa
      361 cccgaatggc agtaataaac cgataataaa gattaccaca gggaaaaata atgcacttac
      421 cattccccca gcactaaaaa gcaaccatac cggcggttca tttgaacgtt ttgggttttg
      481 atcaagactc attttcttcc ccttcttaaa tataaaccaa gattaatgca attacgctaa
      541 ttacgcctgt tgctgcccaa agaatatttc ttccaaccga gactggtaag tgtttacctt
      601 taaccatcac ggacatgacg gcaggtgtca tcacaaaaag tgttgccgca tgatataaca
      661 ttgctgccaa tgaaattatg tttaggataa caactaacgg attttgtaag aaatccacaa
      721 aatcggtagt aaatgttcct ttacttaacg caactgctcc ataaaataat acaatgcaga
      781 accaaacagt tggaagacag gtagcttcac gcaccatata cattttatag aagtcgagtt
      841 ttttccacca gctggctttc attcccctta cataaggtct acgttttgtt gctgacattt
      901 cttcctccta tctcggtttg atcattgaga taacataatc tttcgcactt tcaagtttac
      961 cttggtttac agccgaagca gggccgacgt gtttcggaca gacttccgag cagtaaccca
     1021 cgaaagtaca gctccaaaca ccgtttttgc tgctgagtag cttcatacgc tcttcacgac
     1081 cattatcacg gttatccaag ttatagcggt gagccaatgt aatcgcagca ggtccgataa
     1141 attcagggtt caaaccaaat tgtgggcaag ccgcataaca taaaccgcag ttgatacaca
     1201 ttgagaattg acgatatttc tctaattgtg ccggcgtttg tttagtacgc tgtccttccg
     1261 gtgctttatt atcaataata taaggtttaa ttgcctcgat gctatcaata aagtggctta
     1321 aatccactac taagtcacgc tcaatcggga agttcgccag cggctcaatt cgcataaaac
     1381 cgctgtaatc acgcaggaat gttttacaag ctaacttcgg cttaccgttt accatcattc
     1441 cgcaagaacc acaaatcgcc atacggcaag accagcgata agaaagttcc ggttctaatt
     1501 cgtctttaat gaagcccaat gcatctaaaa gtgaagtttg gctgtcatac ggcacttcat
     1561 atctgtctaa atgtggctcg ctatctgatt cagggttgta gcgtagcact tcgatggtca
     1621 ttttatctaa atttgccatt ttactactcc ttctctattg ttgtgcttga gcttctgctg
     1681 cttttttgac tttttcttgg gcttcagcct ctgcaccata cacacgttta gccggttgtg
     1741 atttagtgat tttcacatcg ctgtatttaa tcgtcggtgt accctctgca ttgtagtacg
     1801 cttgtgtgtg ttttaagtag ttcacatcat cacgctcaac atagtctaaa cgttggtgag
     1861 ccccacgaga ttctttacgc tctaccgcag agcaagcaat ggattgagcc acatctaaaa
     1921 tgaagcctaa ttcaattttg tagagtaaat cagtgttaaa cacacttgat ttatctttta
     1981 cgctgatgtt tttataacgc tcttttagct cttggatttt gtttacagtc gcttccatac
     2041 tttcttgggt acggtaaata ccacaacctt cttccatcgc atcacccatt tggttacgga
     2101 tatccgacca agattcatta ccctcttggt tcgctaatgc gtgcaagcga gccaccacat
     2161 cttttgcttg tgcatcaatt tgtggctggt tgcgagcagt cacttctaac gcacggcgag
     2221 ccgcattttc accggcaact ttgccgaaca ccacaagctc tgctaatgag ttagaaccca
     2281 aacggttcgc accgtgcaag cctgatgaag cacattcacc tactgcgaat aagcctttaa
     2341 ttgaggtttc cgcattcata tccacttcaa taccacccat cgtgtagtga accaccgggc
     2401 gaacaggaat cggcgcttta gccggatcga ccccttcata ggctttcgct aattcacaaa
     2461 taaacggtaa acgctcaagt aaatattttt cacctaaatg gcgtaaatct aagtgaacta
     2521 cgtccacgcc ttttgcggtt tttaaggtgt tccctttacg ccattcttgc cagaatgctt
     2581 gtgaaacctt atcacgaggg cctaattcca tatatttgtt ttccggtttg ccgataggtg
     2641 tttccggtcc taaaccataa tcttgcaggt aacggtagcc atctttatta actaaaatac
     2701 caccttcacc acgacaacct tctgtcatca aaataccggt atttggcaaa cctgttgggt
     2761 gatattgtac gaactccata tcacgcaaag ccacaccgtg acgatacgcc attgataaac
     2821 cgtcgccggt tacaataccg ccgttagtgt taaagcgata agtacggcag ccgccaccgg
     2881 ttgcaatcac aactgcattt gcattgattt gaacaagtgt gccttccatc atattcattg
     2941 ccacacaacc acgagcttcg ccgttgtcgg tgagaatatc cagcacaaaa tgctcatcaa
     3001 aacgcacaat attcggatat ttaatcgaag tttggaacaa agtatgcaaa atgtggaaac
     3061 cggttttatc cgccgcaaac caagtacgct caattttcat tcctccaaaa cggcgaacat
     3121 tcacttcacc gtcttcacga cgactccaag ggcaacccca gcgttctaat tgtgtcattt
     3181 caatcggcga atgctctaca aaatactcca caatatcttg ctcacataac cagtcaccac
     3241 caccgacggt atcattaaag tgattgtcga aagagtcggt atctttaatt accgccgctg
     3301 aaccaccttc tgctgcaacc gtatggctac gcattgggta aacttttgaa attaaagcaa
     3361 tttttagatt tggatttgct tcagccgccg caatagcagc acgcaagcca ccaccaccgg
     3421 cacctataat cgcgacatca aaattaacac tttgcataat gcactccgaa agttaaataa
     3481 cttaattcat taaaaagtaa tcatattgtg ccactatttg agcaatgaga taacctattt
     3541 ttacaaattt gtaacataaa aaatgtaatt ttgtgatcta cctcaaaaaa ggtaataaag
     3601 cttcataaag gtattgagaa tggctcttaa ttggacagtg atagaaagaa aatttctaat
     3661 gtttaaaatg agaaaattta atttgttgca aaaaagttaa aaccctctct ttatttttct
     3721 tgatcggtaa ctagggcaac tcactttttt aggctaaaat agcctcacat tttcaagcgg
     3781 tcatttttta tgaacaattt acaactcgat aatattgatt ggcaaccaac agcctctatt
     3841 cctcacctga tccaacgttc aaaaatcatt acggaaatcc gcaagttctt taccgatcga
     3901 gggcttttag aggtagaaac cccgatttta agcgaatttt cggtgacaga cgttcatctt
     3961 tcgactttca atacgcagtt tcaatcgcct ttttcccctg aggcgaaaac actccatctg
     4021 atgaccagcc cggaatatca tatgaagcga ctacttgctg ctgggagtgg accgattttc
     4081 caactgtgta aagtatttcg caacgaggaa gccggtaagc gacacaaccc tgaatttacg
     4141 atgctggagt ggtatcgccc gcattttgat atgtatcgct taatcaatga agtggatgat
     4201 ttactgcaac aaattttgga ctgcgaaccg gcagaatcat tcagctatca atttgtgttc
     4261 caaacctatg tcggattaga tccgctttct gccaccaaag cacaacttgt ggaaaaagcc
     4321 cgaaaacacg gcttgcaatg tgatgatgat gaacagcgtg acaccttgtt acaattttta
     4381 ttcagcgagg ttgtcgaagc caatatcggg caagaaagac caactgccgt ttatcatttc
     4441 ccttccaccc aagcggcatt agctcaaatt agctcggaag atcaccgtgt tgccgaacgt
     4501 tttgagtttt actacaaagg cttggaactc tgtaacggct tccacgaatt agacgatgct
     4561 gatgagcaaa ttcatcgctt cgagcaagat aatctgcaac gtgaaaaaat ggggctggag
     4621 ccacagcaac tagatgtgcg ttttcttgcc gcactcaaag cgggttttcc aaactgctca
     4681 ggtgtcgccc ttggggttga taggctgtta atgctggcaa tggatgcgga aaaaattgaa
     4741 gaggttattt ctttcggcat tgaaaaagcc taatttttta tgccgttttg tgatttgcaa
     4801 tttgcaaaaa aatcgacaaa tatgaccgct tgtacactcg tttaggaaag caaaatgaat
     4861 atttcaggca aattacaggg ttggcactat gccctactgt gctacttaac ttggggaacc
     4921 tttccgattt attggtatcc gatcaaccaa tcgggaatgc ctgccgagca aattttggct
     4981 caacgggtgc tttggtctgc cctatttgct gtgtttctgc tgctgatttt ccaacaaggg
     5041 cgagcggtta ttaatgcctt taaacagcca aaggtactcg ggctgttcgt gctttcttct
     5101 tttatgattg gcgtgaactg gctggtttac ttatgggcaa tcgtcaatga gcatatttta
     5161 gatgccagtc taggttattt tatcaacccc attttcaacg tgtttgtcgg taggcttatt
     5221 ctaaaagagc agctgaataa agcccaatta ttggctctgc tgtttgcaat tagcggcatt
     5281 ttatggcttg ctattcctgc cggacaaatt ccgtgggtcg cattgattct agccgccagt
     5341 ttctgtattt acgggctgat tcgtaaactt gccccaatgg aacctttgtc tggtttggcg
     5401 ttagaaactt tgctgatgtc gccttttgcc atcacctatc tctgcttttg ttaccaccaa
     5461 aacattttgg tattcagtga actcaatcct ttacaaatgg cagtgctact ctgctccggc
     5521 attgccacta ccttaccatt gctatggttt gcaatgggtg caagacgcat ttcaatgtcg
     5581 ctactcggta tgctgcaata tatttcacct accctgcaat ttttatgcgg tgtgctgatt
     5641 tttaatgaga cactttccgc cgaacgtgct gtaggctaca ttctggtttg gattggggtg
     5701 ggggttttct tattgggtat gaaaaaagct ggtgtcaaac gctaaaaata aaacgttaaa
     5761 tatttcgttt tggtagccct aatgcagcaa aaccaagtag tggcaaatag gcacaggctt
     5821 taaaaatact ctccaagcca tattcatccg caaaaaaacc caatacggcg gcacttaagc
     5881 cgccaatacc aaacattaaa ccgaacattg tgccggaaat cagccctact ctgcctggta
     5941 cggcttcttg agcataaacc accatagcgg agaacgctga tgacataata aaaccggcaa
     6001 aaatcgcaca cacaatcgtc caaaagagat ctgcgtgagg caacaacaaa gcaaaaggtg
     6061 ccatacctaa gaaagagaac caaatcaccg catttcgtcc aatcttatcg ccaatcggcc
     6121 cgccgacaaa agcgcctaaa gcaactgcac ctaaaaaggt aaatagagag agctgtgcca
     6181 ttgctatatt gagttggaat ttttccatta aataaaaggt gaaatagtta ctgaggctcg
     6241 caatataaat aaatttcgct aacatcaata aagcgataat taataatgct ctggctaata
     6301 atttaccgtg taagcgttgt tgaatatggt ttggtgaaat aatgagcggt ttggcttcat
     6361 atttcaccca acggcttact ttatataaaa cccatcataa tgccaataat acaaatgcaa
     6421 caacccaaat caccgcactt tgccctaacg gcacaataaa taatgcaact aagagcggac
     6481 ctaacgccga tccactgttt ccacctactt ggaaaagcga ctgagctgta ccaaatttac
     6541 cgcccgatgc cattcgagcc acccgagagg cttcagggtg aaaaatggca gagcctatcc
     6601 ccattaacgc agcggctatc agtaacacgc caaaattcgg cgaaaaggca agtaaaatca
     6661 cggaaagaag cgtaatcagc atactgacgg gcaataaatt cggttttggg tatcggtata
     6721 aagcccaata cccggctgaa taatagatgc ggtaatttga taaatgagtg aaatcatacc
     6781 aatttgagca aaactcagtt ggtaattttc ttttagcatt ggatagatcg aaaccattac
     6841 tgcttgaact aaatcattca acaaatgaga aagggaaatc agcagtaaaa tgggcaaaac
     6901 cattttttga gcgttatgtt gtgtgtgcat tctttattcg ttttttataa atgaaaaata
     6961 ttctactcgc aaataatgaa tgtgcaagcg gtcaaatttc ccgatttttt taccaaaccc
     7021 attaggttgc aatattatta ccaatacgtc ttaaatttgt tatttttata tctttttgct
     7081 atattcaagc ctctaaccat tcaaaaatag aggaaatagc attggattta atcaaaaaat
     7141 taaacacagg aagtaccttt agggtaccga ttttcctacc gagtttactc tttgtcagct
     7201 ttgttgccgt tttctgtatc atctttccac agcaagcaca aacctcactt gataccatca
     7261 aaaatagtct cttccaacat tttagctggt tctatatttt tgcaggctct atctttttcc
     7321 tgtttctaat ttttctctct ttcagccgat tgggtgatat taaattaggg gcagataccg
     7381 atgagcctga atttggtttt ggctcttgga ttgcgatgtt attcgccgcc ggaatgggga
     7441 tcgggttaat gtattttggg gtagcagaac ctattttgca ttaccttaaa cccgtccaac
     7501 aaaatttaac tgagccggag cgtatgaaag aagcgatgat gacaacgttc tatcattggg
     7561 gtattcacgc ttgggcaatt tatggtgtga ttgccttagc tcttgcttat tttggcttca
     7621 gatataagtt agcactcact attcgttccg gattttatcc cttactaaaa catcgtattt
     7681 caggcttctg ggggcattta attgatatta ttgccctttg tagcacgatt ttcggtttaa
     7741 cgactacact tggctttggg gtgatgcagg tcagtgctgg ctttaacaat ctaggtttaa
     7801 ttgaacagag caattttact gttcttgcga ttatcgtaac agtagcaatg gctcttgccg
     7861 tgttatctgc cgtttcgggc gtaggcaaag gggttaaaat cttaagtgaa atcaatctca
     7921 cattagccgg attgctactt atttttgtga taatcaccgg cccaactcta ttacttttct
     7981 caagcttcac cgaaaattta ggctattatt ttagctcgct gcttgagatg agtttccgta
     8041 ccttcgctta tgaaccggaa catcaaggct ggctaagcgg ctggacggtc ctttattggg
     8101 catggtgggc atcttgggcg ccatttgttg gtttgtttat tgccaagatc tctaaaggca
     8161 gaaccattcg tgaatttatt ttaggggtgc tatttgttcc atcgctgttt aacattttat
     8221 ggatgaccag cttcggcagc tctgccattt ggttcgatca acaaactgcc ggtgctttag
     8281 ctgaagtcag cggcaatacc gaacaactgt tatttacctt ttttgagcaa ttaccgtttg
     8341 gctctattgc ctctttcgtt gccgtcattg ttatcagtat tttctttatc acctctgccg
     8401 actcggggat ttttgttctc aacagcattg cttcacaagg cgaagaaaat gcaccgaaat
     8461 ggcaaagcgt gctttgggga gcattattag ccatcttagc gttatcacta ctctattcgg
     8521 gtggcttggc ttctctgcaa acaatgacac tgattatcgc cttaccattt accttcatta
     8581 tgctgattct ctgtatcggc ttatggaaag gattaatggt agataaccaa tacttcaaca
     8641 aaaaattctc gcaaggtagc caacattggg cgggtaaaga ttggaaacaa cgcttggaga
     8701 aaatcatcaa cccaagcaat aagcaagatg tccgtcactt ctttattaaa gttgccagac
     8761 cagcattttt agaacttatc gaggaatttg aaagctatgg cttaatcgct aaaatgaatt
     8821 tcaccaacga acaaaacccg aaattagagt ttgaagtggt gaaagaaaat ttacgcaatt
     8881 tcatttacgg cattgaaagt gtgccacggg aattatcgga tttggtggta ggtgacgaca
     8941 acctaccgaa cattgagcaa aataccattt acgagccgat tacttatttc ttagacgggc
     9001 ggaaaggtta tgatgtgcaa tatatgacca aagaagagtt gattgccgac gtgctgcaac
     9061 agtatgaacg ctttatcaat ttagcgatgg acaactcgca cgacttaatg acggctgatt
     9121 tcaatcacta accccacaag cggtgagatt ttcggaaaaa tttgcaaatt tccaacaaaa
     9181 tctcaccgct tgcatttaaa gccaacgcct tacttggttg caatatttgg cataatgtgt
     9241 gccgaatttt tgggctaaaa tttgctcttc cggcttgatt tggaaatagg ttatcaacca
     9301 tacaaacagc ggtaaaacca gccacgccaa cattgccccc aaccataatg cccacgcaat
     9361 caaacctaat agtaacgaaa gatacattgg gtttcggctt ttgcggtaaa tgccccaagt
     9421 gaccaattta gcggtatgtt gtggtcgaaa aggactgtat gtcgttttcg cttggtgtat
     9481 gacccaaagt gccgagacgg caaccgctcc gccaattatc gccacagcta aaccgctaaa
     9541 aaatatggct gtatgctgat aattcggcaa gctcaccggc acatattgag ctaccagcca
     9601 cattaaagcg gcacaaagca agaaccaagc cggcggcggg attttcagtt ttaatgattt
     9661 cattttatgc cgagcggaaa tcttttttac gaatgcctaa taccaaaata gaggcaaaat
     9721 aactaccgcc ggctaagatc atcagccaaa tcagccaata cactttctgc cacattgtca
     9781 ttaatgccca aagttcaatc tcaggcgtga aataggcaac caacgccccc attacacaag
     9841 cggcgatgaa tagtttcaac acaaaaagca cggttttatg gcttacttta tagtaaccat
     9901 tttttgagag attcacatac agcaagctca cattcactaa tgccgaacac gcagaagcta
     9961 acgctaaacc aatgtatccc aaaaacggag caaacgccaa gccaaagcaa atattactta
    10021 aggcggcaat aatcccaact tttaccggtg ttttggtgtt ttggttggca taaaaaccgt
    10081 ttgccagcac gctaatcaac atatagctgt ttaaccccaa gcacattacc caaagtggat
    10141 aagaggttgc cagcacatct tcaaaaccaa atttaccccg cataaacatt gtcataataa
    10201 tcggctgagc cagcactgcc ataccgatca ttgccggaat gccgagcaac agcaccattc
    10261 tcacccccca atccattgtg ttttgaaagt gttctccacg ttggatttca gtgagttctt
    10321 tgtttttcgc aatacgggaa aggcttggca gcacgacggt ggaaatcgca attccaaata
    10381 aaccgagcgg aaattcaatt aagcggtcgg cataatacat ccaactaatc gagccggtaa
    10441 tcaaaaacga ggcaatcact tggtttagca gtaaatttag ctgggtaacg gaaacgccaa
    10501 ataaagccgg aatcattaat ttacggactt tagtgacacc ttcgtctttc cacgcccatt
    10561 ttggcttaac cagtaagccc tcttttttca taaatggaat ttggaataaa aattgcaata
    10621 agccgcctaa aaataccccc cacgctaagg caatatccgg ggaatcgaaa taatctctgc
    10681 cccataacgc taccgcgata atcgccacat tcagcaacac cggggaaaat gccatcaccc
    10741 caaacttacc gatggtattt aacaccgcac cggataacgc cacaaaggta ataaaccaca
    10801 aataagggaa agtgattttg agcaaaaaag aggcttgggt gaatttttcg gcatttggcc
    10861 cgtcgtaaag ccaatctaaa aaccaacctg taccaaaaag agcggcaacc acaggcgagg
    10921 caatcattgc cacaagggta acaacagtta ccaaacctcc taatgtaccc gatactttgg
    10981 caataaattc tctcgttttg tttggatcgt tatccgcatt atattccgcc aacaccggca
    11041 caaaggcttt agaaaatgcc ccttcggcaa acaaacggcg aagaaaattg ggaatacggt
    11101 tggcaaacag gaaaatatcg gcactcacgc ctgtgcctaa aatggttgcc accacaatgt
    11161 ctcgaatcaa accgagtatg cgagaaatta aggtcataaa gcttacgatc attcctgatc
    11221 ttaaaagttt tttgctcata ataaagagta atattagta
//
LOCUS       DANMBQ010000083        11091 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.083, whole genome shotgun sequence.
ACCESSION   DANMBQ010000083 DANMBQ010000000
VERSION     DANMBQ010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11091)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11091)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11091
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.083"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(40..4500)
                     /gene="mukB"
                     /locus_tag="PXE92_001770"
     CDS             complement(40..4500)
                     /gene="mukB"
                     /locus_tag="PXE92_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HDL5760992.1"
                     /translation="MIDTTELQNNPQIAPLARPNDVQRGKFLSLTLINWNGFFARTFD
                     LDDLVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTAGSRDKGLYGKLK
                     AGVCYAVLESFNSRGQRIITGVRLQQIVGRDKKVDIRSFSLQNIPQEQSIISLLTEQV
                     GNKARVLALNELKDQFENSEVQFKQYHSITDYHSFMFDLGVIPKRLRSAADRSKFYKL
                     IEASLYGGISSVITKSLRDYLLPENTGVRQAFQDMESALRENRMTLEAIKVTQSDRDM
                     FKRLITESTNYVSADYMRNANERRGNVQQALEQRKEWYAAKSKILLEQQRFVEFSRES
                     ADIAEAELALEADYNSANDHLNLVMNALRHQEKIERYQDEVEELNIKLEEQQEALEEI
                     AEIAENAQARADEADDHVEELRSQMADYQQALDAQQTRALQYQQAVNALEKAKQLTGL
                     VNLDLNNIEDYHAEFVAQAEDLTDQVFELEQRLSVSDMAKTQFEKAFELVCKISGEID
                     RLQAWEEARALLSAFPEQKMQAQQAVSLRQKLNDLEQRLQQQQNAQRLVAEFNQKSQQ
                     QLNSAEELDAYFEEQQARLEDLEAELSDFVEQRSTQRQQREQLNQQYQQLAKNAPAWH
                     TAQSALTRLEEQCGEKFEASQSVMQFMQNMLSKEREATLARDELARKEQMLDEQINRL
                     SQPDGSEDARLNQLAERFGGVLLSELYDDVSIEDAPYFSALYGEARHAIVVRDLEAVK
                     TQLEKLDDCPSDLYLIEGDPSAFDDAVFSAEELGEGVVVKVSDRQWRYSKFPEVPLFG
                     RAAREKHLATLKAERDETAEKHAERAFDVQKCQRLHQHLSQFIGTHLNLAFQENPEML
                     MQEIAAERAEIERELAQSAGNEQQLRHQLESVKAQLQMLNKILPLANLLADETLEARA
                     EECREQLELAEEDEMFIRQFGATLSQLEPIAAALKSDPALFEQLEADYRRSVAEQKVL
                     QQKVFSLADVMNRRLHFSYQETVGTEGSALTEQLRQRLENAQREREQARDQLRQAQAQ
                     LSQYNQVLTGLRSSYEAKNQMLQELIREIDDLGVRGDSGAEERARFRRDELQQRLSQQ
                     RSRKGYLDKQIAVIEAEMDNLNRTLRKAERDYHTQRELVVQAKASWCIVQRLSRNSDV
                     EKRLNRRELAYQSAEELRSISDKALGALRTAVADNEYLRDSLRASEDSRKPENKVAFF
                     IAVYQHLRERIRQDIIKTDDPIDAIEQMEIELSRLTNELTGREKKLAISAESVANILR
                     KTIQREQQRILQLNQGLQNIAFGQVKGVRLVVNIRDTHAILLNALSNNREEHKDLFDS
                     QKLSFSEALAMLYKRVNPHIEMGQRTPQTIGEELLDYRNYLDLEVETFRGADGWMRAE
                     SSALSTGEAIGTGMSILLMVVQSWEEEARRMRAKDILPARLLFLDEAARLDATSINTL
                     FELCERLDMQLLIAAPENISPERGTTYKLVRKITNNQEYVHVVGLKGFAK"
     gene            complement(4676..5392)
                     /gene="mukE"
                     /locus_tag="PXE92_001771"
     CDS             complement(4676..5392)
                     /gene="mukE"
                     /locus_tag="PXE92_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HDL5760993.1"
                     /translation="MTENIQDFISPKLALAIANPIFPELDSQLRAGRHINTEQLDQHV
                     FLMDFQAELESFYRRYHVELIRAPEGFFYLRPKASTLIARSAMSEMEMLVGKVLCYLY
                     LSPERLAQQGIFSQDDVYEELLSLADESKLLKAVNPRSTGSDLDRAKLAEKAGGALRR
                     LARIGIITRVGEQNSKKFVISESVFRFGADVRTGDDPREAQLRLIRDGEATTPALLNE
                     QAVEIDENIADEAPFDGENE"
     gene            complement(5441..6784)
                     /gene="mukF"
                     /locus_tag="PXE92_001772"
     CDS             complement(5441..6784)
                     /gene="mukF"
                     /locus_tag="PXE92_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HDL5760994.1"
                     /translation="MQNELAQTIPELISWTKDREFSLSLSSDRLAFLLAISIYNQEQT
                     DGELLESDLIDLFRYVSNSFEQSDATFTQRANNAINDLVRQRLLNRFSSEFTEGLAIY
                     RVTPLGVGISNYYVRQREFSTLRLSIQLSIVADEIQRASVAAEEGIEQAQDERFWRNN
                     VFAPLKYSVAEIFDSIDLSQRIMDENQHQIRERIAELLSQNWHEAIMSCEQLLDETSG
                     NLRELQDTLNAAGDKLQAQLLRIQSCLMARNDLDFIDQLIVNLQNKLDRIISWGQQAI
                     DLWIGYDRHVHKFIRTAIDMDKNRVFGQRLRQSIQDYYNSPWLLYTAKADSLLDLRDD
                     EAMLNEAESVGELPSELEYESLSDVQEQIVSAMQAHLAPFRAEGKPIDLGVILREQLA
                     RFPESRHFDVARIIVDQAVKLGMASQDSQAVYPQWQPINEQGAEVQANVIDQYNK"
     gene            complement(7049..7936)
                     /gene="galU"
                     /locus_tag="PXE92_001773"
     CDS             complement(7049..7936)
                     /gene="galU"
                     /locus_tag="PXE92_001773"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDL5760995.1"
                     /translation="MKVIIPVAGLGTRMLPATKAIPKEMLILADKPLIQYIVNECVAA
                     GFKEIVLVTHSSKNAIENHFDTSFELETMLEKRVKRQLLDDVRSIVPKDVTLIHVRQG
                     QAKGLGHAVLCGRTVVGDEPFAVVLPDVLLGEFTANQKTENLAAMVKRFQETGYSQIM
                     VAPVPMENVSSYGVADCHGVDIPLGGAAPIAKMVEKPSIEEAPSNLAVVGRYVFSSNI
                     WNLLEKTPVGVGDEIQLTDAIDMLIHQETVEAFHMTGRSFDCGYKVGYMKAFVEYSLN
                     HDKCGKEFKAFIKELAKSL"
     gene            complement(8072..8257)
                     /gene="csrA"
                     /locus_tag="PXE92_001774"
     CDS             complement(8072..8257)
                     /gene="csrA"
                     /locus_tag="PXE92_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HDL5760996.1"
                     /translation="MLILTRKIGEVLLVGDDVEITVLSIRGNQVKLGVNAPKEISVHR
                     REIYERIKASVEEENAE"
     gene            complement(8347..10974)
                     /gene="alaS"
                     /locus_tag="PXE92_001775"
     CDS             complement(8347..10974)
                     /gene="alaS"
                     /locus_tag="PXE92_001775"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDL5760997.1"
                     /translation="MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMN
                     QFKDVFLGLEKRPYSRATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYF
                     KQDAIKFGWEFLTSPQWLGLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNK
                     GAPYASDNFWAMGDTGPCGPCTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQF
                     NRLADGTMEKLPKPSVDTGMGLERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLD
                     NKSLRVVADHIRACSYLIADGVLPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLV
                     PTLATVMGQAGEVLTQKQAHIQKTLKAEEEQFARTLERGLNLLEEALAKVENNTLSGE
                     VAFKLYDTYGFPLDLTADVCRERDIKIDEDGFNAEMTAQRERAKASSSFGTDYNNVIK
                     VDSKTCFSGYTETSLNDATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD
                     SGQISAEICNFEVVDTQKYGQVFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSA
                     THLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENI
                     QVIIEEMDIESAKAKGAMALFGEKYGEVVRVVEMSDFSIELCGGTHVKQTGDIGLFKI
                     TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAK
                     RTEKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLG
                     SAVVVFATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKVGGKGGGRPDMAMAGGSE
                     PQHLLQALSLAQEWITAKL"
BASE COUNT         2983 a         2585 c         2116 g         3407 t
ORIGIN      
        1 acaatctttt tatacatatt tagattaaag tgctaagttt tatttagcaa agccttttaa
       61 accaacaacg tgaacatact cttggttatt ggtgatttta cgcaccaatt tataagttgt
      121 gcctcgttca gggctaatat tttcaggggc tgcaattaat aactgcatat ccaaacgttc
      181 gcagagttca aatagcgtat taattgaggt agcatctaat cgagccgctt catctaagaa
      241 caataagcga gccggtagaa tatctttggc acgcatacgg cgagcttctt cttcccagct
      301 ttgaactacc attaagagaa tcgacatacc tgtaccgatc gcctcaccgg tcgataatgc
      361 actactttct gcacgcatcc agccgtctgc accacggaag gtttccactt ctaaatctaa
      421 gtagttacgg taatccaata actcttcacc aatggtctgt ggtgtacgtt gccccatctc
      481 aatatgaggg ttcacccgtt tatacaacat cgctaaggct tcggagaagc tcagtttttg
      541 gctgtcgaat aaatctttgt gttcctcacg attattggat aacgcattga gtaaaatagc
      601 gtgcgtatct cggatattca ccaccaaacg cacccctttt acctgaccga atgcaatatt
      661 ttgtaaacct tggttcagtt gcaaaatgcg ttgttgttca cgctgaatgg ttttacgtaa
      721 aatatttgcc acactttccg cactgatcgc cagttttttc tcacgaccgg ttaattcatt
      781 ggttaagcgt gaaagctcga tttccatctg ctcaatcgca tcaatcggat catcggtttt
      841 gataatgtct tggcgaatcc gctcacgcaa atgctgataa accgcaataa agaacgccac
      901 tttgttttcc ggcttgcgac tatcttcaga agcccgcaag ctatcacgca ggtattcatt
      961 atccgccacg gcggtgcgta atgccccgag agctttatcc gaaatcgaac gtaattcttc
     1021 agccgattga taagccaatt cacggcgatt taaacgtttt tccacatcgc tgttacgaga
     1081 taaacgttgc acaatacacc agctggcttt tgcctgcacc accaattcac gttgtgtatg
     1141 ataatcacgt tcggctttac gtaaggtgcg gttaaggtta tccatttccg cctcgatcac
     1201 cgcaatttgt ttatctaaat aacctttgcg ggaacgttgc tggcttaaac gttgttgcaa
     1261 ttcatcacgg cggaatctgg ctcgctcttc cgctccgcta tcaccacgca cgcccaaatc
     1321 gtcaatttca cgaattaact cttgtagcat ttggtttttc gcctcataag aactgcgtaa
     1381 gccggtcaat acttggttat attgtgaaag ttgagcttga gcttgacgca gctgatcacg
     1441 agcctgttca cgctcacgtt gtgcattttc caaacgttgg cgtagctgtt cggttaatgc
     1501 agagccttct gtacccaccg tttcttgata gctaaaatgg aggcggcgat tcattacatc
     1561 agccaagctg aacacttttt gctgtaacac tttttgctcg gcaactgaac ggcggtaatc
     1621 ggcttccaac tgttcaaata aagccggatc actttttaat gcggctgcaa tcggctcaag
     1681 ttggcttaat gttgctccaa attggcggat aaacatttca tcttcttctg ccaattctaa
     1741 ttgctcacga cattcctccg ctcgtgcttc cagcgtttca tcggctaata aattcgcaag
     1801 cggtagaatt ttattcaaca tttgcaactg ggcttttacg ctttctaatt ggtgacgtaa
     1861 ttgctgttcg ttaccggctg attgtgccaa ttcacgttca atttctgccc gttctgccgc
     1921 aatctcttgc attaacattt cagggttttc ttggaacgct aaatttaagt gcgtgccgat
     1981 aaattggctt aagtgttgat gtaaacgctg gcatttctgc acatcaaagg cacgttcagc
     2041 gtgtttttct gcggtttcat cacgctctgc ttttaaagtc gctaaatgtt tttcacgagc
     2101 agcacgtccg aataacggca cttcagggaa tttagaataa cgccattggc gatcggagac
     2161 tttcaccacc acgccttcgc ctaattcctc ggcactaaat accgcatcgt caaaggcgga
     2221 cggatcacct tcaattaaat aaagatcact tgggcaatcg tctaatttct ctagctgtgt
     2281 tttaaccgcc tctaaatcac gcactacaat agcgtggcga gcctcgccgt ataaggcgga
     2341 gaaataaggc gcatcttcaa ttgatacatc atcatataac tcagagagta acactccacc
     2401 aaaacgttct gccaactggt ttaagcgggc gtcttccgag ccgtccggct ggcttaagcg
     2461 attaatttgc tcatcaagca tttgttcttt acgagccaat tcatcacgag caagggtggc
     2521 ttcacgctct ttgctcagca tattttgcat aaactgcatc actgattggc tggcttcaaa
     2581 cttctcgcca cattgctctt ctaaacgagt cagagccgat tgtgccgtat gccaagccgg
     2641 tgcattcttc gctaattgct gatattgttg attaagctgt tcacgttgtt ggcgttgggt
     2701 tgaacgttgt tctacaaagt ccgaaagctc tgcctctaaa tcttctaggc gagcttgctg
     2761 ctcttcaaaa taggcgtcta attcttccgc tgaattgagt tgttgttgcg atttttggtt
     2821 aaattccgcc actaaacgct gggcattttg ctgttgttgc aaacgctgtt ctaaatcgtt
     2881 gagtttttga cgtaaactca ccgcttgctg agcttgcatt ttttgctcag ggaaggcaga
     2941 aagtaacgca cgagcctctt cccacgcttg caagcggtca atttcaccgg aaattttgca
     3001 aaccaattca aacgcttttt caaattgggt tttcgccata tccgacacgc ttaaacgttg
     3061 ttccagctca aatacttgat cggtaagatc ttcggcttga gccacaaatt ctgcgtggta
     3121 atcttcaata ttatttaaat ctaaattcac taagccggtt agctgtttgg ctttttctaa
     3181 cgcattcacc gcttgttggt attgcaatgc acgagtttgc tgtgcatcta aggcttgttg
     3241 gtaatccgcc atttgagaac gcaattcttc aacgtgatca tctgcctcat ccgcacgagc
     3301 ctgagcattt tcggcaattt ccgcaatttc ttccaatgcc tcttgctgtt cttccagctt
     3361 aatattcagc tcttcaactt cgtcttggta gcgttcgatt ttctcttggt ggcgtaacgc
     3421 attcatcact aaatttagat gatcgttcgc actattgtaa tccgcctcta acgccagctc
     3481 tgcttcggca atatccgcac tttcacggct aaattccaca aagcgttgct gttcgagcaa
     3541 aattttggat tttgccgcat accactcttt gcgttgctct aaggcttgtt gtacattgcc
     3601 acggcgttca ttcgcattac gcatataatc cgccgacaca taattggtcg attcggtaat
     3661 taagcgtttg aacatatccc gatccgattg cgtgacctta atcgcctcta aggtcatacg
     3721 gttttcacgc agagcggatt ccatatcttg gaacgcttgg cgaacgcccg tattttccgg
     3781 caacaagtaa tcacgcaagg atttggtaat cacacttgaa ataccaccat aaagcgaggc
     3841 ttcgattaat ttgtagaatt tgctacggtc ggctgccgaa cgaaggcgtt ttgggattac
     3901 gcccaaatcg aacataaaac tgtggtaatc agtaatcgaa tggtactgtt tgaattggac
     3961 ttcgctgttc tcaaattgat ctttgagttc atttaacgcc agcactcgag ccttattccc
     4021 cacttgttcg gtcagtaggc tgataatgct ttgctcttga ggaatattct ggagcgagaa
     4081 cgaacgaata tcgacttttt tatcccgtcc gacaatttgt tgcaaacgca cgccggtaat
     4141 aatccgttgc ccacgggaat tgaatgactc taacaccgca tagcaaacac ccgcttttaa
     4201 cttaccgtat aagcctttat cacgagaacc ggcggttgag cctgcttcag tcgtattacg
     4261 gaaattaagc aaggttaaat ctgggatcaa ggcggtcaca aaccctgcca ttgtggtgga
     4321 cttacctgcc ccgttaccgc ctgaaagcgt ggtcactaag tcatctaaat caaaggttcg
     4381 agcaaaaaaa ccgttccagt taatcagcgt taaagagaga aatttaccgc gttgtacatc
     4441 attcgggcgt gcaagcggtg caatttgagg attattttgc aattctgtgg tatcaatcat
     4501 tatgttttct cactaattgt cctagcacgc taaagcgtac taggttaggt ataggtgagt
     4561 agctccgcta ctctaatcgc aacctcagcc ttggagggct gctttatgct taacctagtt
     4621 cggctttacc gtgtctaggg cagactcatt aaatgctgaa tctattcgaa tgaaatcact
     4681 cattttctcc gtcaaagggg gcttcatctg caatattttc atctatttca accgcttgtt
     4741 cgtttaacaa cgcaggggtt gtcgcttcac catcacgaat taagcgaagc tgtgcctctc
     4801 ttgggtcatc accggtacgc acatcagccc caaaacggaa gaccgattct gaaatcacaa
     4861 attttttgct gttttgctcg cctactcggg taataatgcc gatacgggct aatctgcgta
     4921 acgctccgcc ggctttttct gccagcttgg cacggtctaa atcggaaccg gtcgaacgtg
     4981 ggtttaccgc ttttaataat ttgctttcat cggcaagact gagtaattct tcatacacat
     5041 catcttggct gaaaatcccc tgctgagcca aacgttccgg acttaaatag aggtagcaca
     5101 acaccttacc cactaacatt tccatttctg acattgccga acgggcaatt agtgtcgagg
     5161 ctttcgggcg taggtagaaa aagccttccg gtgctcgaat caactcaacg tgataacggc
     5221 ggtaaaaact ctctagttcc gcttgaaaat ccatcaaaaa gacgtgttgg tcaagctgct
     5281 cggtattgat atggcgaccg gctcgtaatt ggctgtctag ctccggaaaa atcgggttgg
     5341 caatcgcaag tgccagtttc ggggaaatga aatcttggat attctctgtc attgtcattc
     5401 tcttcaattt tgcaaaattc tgggtaaaaa cgaccgcttg ttatttattg tattggtcga
     5461 taacattcgc ctgcacttcc gccccttgct cgttaatcgg ctgccattgt gggtaaacgg
     5521 cttggctatc ttggcttgcc atacctaact taacagcttg atcgacaata atacgagcca
     5581 cgtcaaaatg gcgggattcc gggaatcggg caagctgttc acgcaagata acgcctaaat
     5641 ctatcggttt accttcagca cggaacggcg ctaaatgagc ttgcattgcc gaaacaattt
     5701 gctcttgcac atctgaaagc gactcatact ctaactcact tggcaactcg cccaccgatt
     5761 ctgcctcatt taacattgct tcatcatcac gcaagtccag taacgaatcg gcttttgcag
     5821 tataaagcaa ccaagggctg ttgtaataat cttgaatcga ttggcgtaac cgttgcccga
     5881 atacacggtt tttgtccata tcaatcgctg tacgaataaa tttatgcaca tggcggtcat
     5941 agccgatcca aagatcgata gcttgttgtc cccagctgat aatacggtct aacttatttt
     6001 gtagattcac aatcagctga tcgataaaat ccaaatcatt acgagccatc aggcaacttt
     6061 gaatccgcaa taattgagct tgcagtttat caccagcggc atttaaggta tcttgcaact
     6121 cacgcaaatt ccccgaggtt tcgtctaaca attgctcaca actcataatt gcttcgtgcc
     6181 agttttggct aagcagttcg gctattcgtt cacggatttg gtgctgattt tcgtccataa
     6241 tccgttgtga aagatcgatg ctgtcaaaga tttccgccac cgaatatttc aatggggcaa
     6301 acacattatt tcgccaaaaa cgttcatctt gtgcctgctc tattccctct tccgctgcta
     6361 ctgaagctcg ctgaatttca tctgccacaa tcgaaagttg aatcgataaa cgcagggtag
     6421 aaaattcccg ctggcgaacg taataatttg aaattcccac ccctaacggc gtaacacgat
     6481 aaatcgccaa accttccgta aattcgctac taaaacggtt taacaaccgt tgtctgacta
     6541 aatcattaat cgcattattg gcacgctggg taaaagtggc atcagattgc tcaaacgaat
     6601 ttgaaacata acggaaaaga tcaataagat cactttctaa caattcacca tctgtctgtt
     6661 cttggttata aatagagata gcaagtagaa acgctaagcg gtcggaagaa agcgaaagtg
     6721 aaaattcacg atctttcgtc caagagatga gttctggaat agtctgtgcc aattcgttct
     6781 gcatacgggc ttaatcttta atttctatac aaaaatggta tttattgtaa ctgaatgtaa
     6841 tcaaaatggg aatggataaa acgcagacaa gagaaatgaa caatataagc ggtcaaatat
     6901 gggtgatttt ttgcaaaaag tattttaaag gtaaatgaat ccgaaaattt attatcacta
     6961 cgctaattta tgataccata aatagaaaag actggatcca atagaatatc agacacagcc
     7021 ccttagatca tagtctaaac tctaaggctt agagtgattt agctaactct ttaataaatg
     7081 ctttaaattc ttttccgcat ttgtcatgat ttaaactata ttctacaaat gctttcatat
     7141 agccgacttt ataaccacaa tcaaatgagc gccctgtcat atgaaaagct tcaaccgttt
     7201 cttggtgaat caacatatca attgcatccg tcagctggat ttcatcacct acgcctactg
     7261 gcgttttttc taataaattc caaatatttg aggaaaatac ataacgtcct actaccgcta
     7321 aattagaagg cgcctcttca atacttggtt tttcaaccat tttcgcaata ggcgctgccc
     7381 ccccgagagg gatatctaca ccatggcagt cagcaacccc atagctactt acattttcca
     7441 ttggaaccgg cgcaaccata atttggctat atccggtttc ttggaaacgc ttcaccatcg
     7501 cagctaaatt ttccgttttt tggtttgctg taaattcacc aagtaataca tctggtaata
     7561 caaccgcaaa cggttcatcg ccaaccactg ttcgtccaca tagaaccgca tgacctaaac
     7621 ctttggcttg cccttggcga acgtgaatta aggtaacatc ttttggtaca atagaacgta
     7681 catcatctaa taattgacgt tttactcgtt tctccagcat cgtttccaat tcaaaagagg
     7741 tatcaaaatg gttttcgata gcattctttg aagagtgagt aaccaataca atttctttaa
     7801 aacctgcagc cacacattca tttacaatgt attgaataag aggtttatct gcaaggataa
     7861 gcatttcttt tggaatagct ttggttgcgg gtaacatgcg cgttcccaat ccagcaacag
     7921 gaataatgac tttcatttgg aatcctttga tgacttaaca tattagatat aactgaaata
     7981 aaccgcttag acataacagg cggtcaattt tcagaaaatt ttgcattgcc tgcttcgctg
     8041 ttatcatcta gcagctttac agttaaaatg cttattccgc attttcctct tctactgagg
     8101 cttttattct ttcataaatc tctcggcggt gtacagagat ttcttttggt gcattcacac
     8161 ctaatttaac ttgatttcct cggatgctga gtaccgtaat ctcaacatca tctcctacga
     8221 gtaaaacttc cccaatctta cgagttagaa taagcataat tgtctcctaa aaagtgaaaa
     8281 actctataaa tacttaaata tagagtaaag ttttaaaggc gagttcagct cgccttgtta
     8341 ttatttttaa agttttgctg taatccattc ttgagcaagt gacaatgctt gcaataaatg
     8401 ttgtggttct gagcctccgg ccattgccat atcaggacgt ccgccccctt tacctcccac
     8461 tttttcagcc attgcaccaa ctaattgacc agcattgact ttatcggtta aatctttggt
     8521 cacacctaca atcaaattga ctttatcttc cgccgtagtc gcaaatacaa caactgcact
     8581 gcctaattga ttttttaggt catcaaccat cgttctcaat gcttttggtt caacattctc
     8641 taattgttga atcactacat tcacgccatt gatttgggta gcttgtttgg ctaaatctga
     8701 acctgcttgt gctgcaagtt tatcttttag ctgttgaagc tctttttctg tacgtttagc
     8761 cttctcttgt aattgaacaa ttttctcaac gaatgaatga ctgtctgctt ttaacaattc
     8821 agcactttgt tgaacggctt gttgtaaggt atgcaaccaa gcaatcgcat tttcaccagt
     8881 gacagcctct atacggcgta cacctgctgc taccgcacct tcagaggtaa ttttgaataa
     8941 gccaatatca ccggtttgtt taacgtgtgt gccgccacaa agttcaatcg agaaatctga
     9001 catttccact acacgcacta cttcgccata tttttcacca aataacgcca ttgcaccttt
     9061 cgcttttgca gattcaatat ccatttcttc aatgattacc tgaatatttt cacgcacttt
     9121 agcattcacg atacgttcaa cttcttcaag ttgtgattta gtaattgctt ccggctgaga
     9181 aatatcaaaa cgtaaaatat tttctgacac taatgagcct ttttgagcaa cgtggtcgcc
     9241 tagcacttgg cgtaacgcag aatgcagtaa gtgggtagca ctgtggttta atgtaatagc
     9301 atgacgacgc tctctatcta cgatcgtatt aactttgtcg ccaacagaaa gtgagccgga
     9361 agttaattgc ccaatatgcc cgaatacttg accatatttt tgcgtatcta ctacctcaaa
     9421 attgcaaatt tctgcggaaa tttgaccgct atctcccact tgtccgccca tttctgcata
     9481 gaatggggtt ttatctaaaa tcactaccgc attttcaccc gattgaatag actcaaccga
     9541 ttttccatta ctaaataacc caattacagt agcatcattt aagctggttt cagtatatcc
     9601 actaaagcat gttttactgt ccactttaat cacattgtta taatctgtgc caaagctact
     9661 gctggctttc gcacgctcac gttgtgcggt catttctgca ttgaagccgt cttcgtcaat
     9721 tttaatatca cgttcacggc aaacatctgc ggttaaatct aacgggaagc cataagtatc
     9781 ataaagtttg aacgcaactt cgccagataa ggtgttattt tcaaccttcg ctaatgcttc
     9841 ttctaataaa ttcaatccac gctcaagagt acgggcaaat tgctcttctt ctgctttgag
     9901 tgtcttttga atatgcgctt gtttttgggt cagcacctca ccagcttgcc ccattaccgt
     9961 tgcaagtgtt ggcaccaatt tatagaaaaa ggcttctttt gcacccaaaa tattaccgtg
    10021 acgaaccgcc cggcggataa tacggcgtaa tacatagcct cttccttcat ttgaaggtaa
    10081 aacaccatcg gcaatcagat aggaacaagc acgaatatgg tctgccacta cacgtaaaga
    10141 tttattatct aaatctttca cattaagcaa agtagcgact tctttaatta aagtttggaa
    10201 aatatccgtt tcgtagttgg agtttacgtg ttgcattacc gcagtcatac gttctaaccc
    10261 catccctgta tctacagaag gcttaggcag tttttccatc gtaccgtctg ctaaacgatt
    10321 gaactgcata aatacaatat tccatacctc aatatagcgg tcgccatctt cttctgggct
    10381 acccggtaag ccaccccaat gttcaggccc gtgatcatag aaaatctcgg tacaagggcc
    10441 acaagggccg gtatcgccca tcgcccagaa gttatctgaa gcataaggtg cgcctttatt
    10501 atcgccaatg cgaataatat gttccgatgg tacacctact tctttatgcc aaatatcgta
    10561 ggcttcatca tcagtttcat acacagttac atataatttt tcttttggta agccaagcca
    10621 ttgtggagaa gttaaaaact cccaaccgaa tttgattgca tcttgcttga agtaatcacc
    10681 aaagctgaaa ttccccatca tttcaaaaaa agtatgatgg cgagcggtat aacctacgtt
    10741 ttctaaatca ttgtgtttac cacctgcacg tacacaacgt tgtgccgtag tcgctctgct
    10801 ataagggcgt ttttctaacc caagaaaaac atctttgaat tggttcatgc ccgcattggt
    10861 aaataataat gtcggatcat tctcgggaac aagagagctg cttggaacaa tcgtatgtcc
    10921 tttagtttgg aaaaactcta gaaaagattg tctgatatct gaagttgttt tcattaaaaa
    10981 tcactctttt tgtaaataga agttaaacat ttagttatct tgctatttta cacatttttt
    11041 atgctattgg gggagctata tgctacttat tttttcaatt aaataatttt t
//
LOCUS       DANMBQ010000084        11059 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.084, whole genome shotgun sequence.
ACCESSION   DANMBQ010000084 DANMBQ010000000
VERSION     DANMBQ010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11059
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.084"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            17..751
                     /locus_tag="PXE92_001776"
     CDS             17..751
                     /locus_tag="PXE92_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5760998.1"
                     /translation="MARSSYFARLAEWTLLEHLLVKQPENISVCSFGQSFGTSGRLDA
                     EYYQPKFASLFAQLANFKTMKLGEIVNLQKSVEPGSEAYQTEGIPFVRVSDLSKFGIS
                     QTDKYLHPKDFGNVVRPKKDSILLTKDGTVGIAYRVPQDLNVITSGAIVHLELKTDEV
                     LPDYLALALNSPAVQLQAERDAGGSIIQHWKPSEILDVVIPVLPKNIQQTISDKVQQS
                     FALRVESEVLLEKAKILVEQEIENMR"
     gene            754..1389
                     /locus_tag="PXE92_001777"
     CDS             754..1389
                     /locus_tag="PXE92_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5760999.1"
                     /translation="MPNHNQDLKKEWFNKARIDYHSPFLMLWLSCNSWYNFHYSLGKD
                     RTHIDRIKSDTSNQNKLYKEFERIFTSGKIKEKTNLWNNIEQLHFALVQAELKYSGSN
                     IPSEYSKFNLENVLIDFPNKTNSVAYQNLVIHNAKTRAGKLKTQYANAHDLGNLVLVE
                     DIQKIFSGLLEIIYQVRCHLVHGSLSPTPENHEVVKYCYLILWDCLKGFCD"
     gene            complement(1657..2394)
                     /locus_tag="PXE92_001778"
     CDS             complement(1657..2394)
                     /locus_tag="PXE92_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5761000.1"
                     /translation="MIKIENLTLAHGIQHLSCYLPKGKLIGIMGANGAGKSSLLKAIA
                     GILRPTSGEIWLENCKLHALSAVERSRQFAYLAQQLNVAWQLSVYDVIALGLPAPLPP
                     EQERQKVRSVAEQLAISHLLDNTYQQLSGGEQTRVQLARCLMKQAPILLADEPIAALD
                     PYYQIDIMQQLKALTPTQTCVVVIHHLPLAYRFCDEIILLKNGNLLVSGNTQAVLNAE
                     NIATAFGVKAEMDWEKREMWGIEKLEV"
     gene            complement(2391..3359)
                     /locus_tag="PXE92_001779"
     CDS             complement(2391..3359)
                     /locus_tag="PXE92_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5761001.1"
                     /translation="MKKLNIVLGSLLLLIVSNAAFYQLSDFALLKNAEGVLSDLRWLV
                     LGEIRLPRIGLAVLTGASLALAGNAMQGVFKNPLASPGLLGSSSGATAVSVFLLYYFS
                     APMGWLLFGGVAGALGAFLLVWLISFRHGTTMMILSGVAVNVLLGAAVTLLLSNAESP
                     WALAELYRWLQGSLVWATAEAVCWALPLILLGIVCLYRERRYLDLLTFGEETAATMGI
                     NLQRSFFTVSIGVALLVGATIPQTGTIGFIGLIAPHLARIWLKKPPSQLYLTSALIGA
                     LLLLIADLAVQYVPFFARIYIGTLTAILGVPFLIWILFTQQWRLAQ"
     gene            3540..3875
                     /locus_tag="PXE92_001780"
     CDS             3540..3875
                     /locus_tag="PXE92_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5761002.1"
                     /translation="MYHIERTEIFDQWLENLKDPLAVVTIARRIERAESGNFGDTKYI
                     AEGISEMRLNVSKGYRLYYAQKGSIIYILLNGGHKGTQQADIDKAKMLWAEIKQHMAE
                     QEKKNERII"
     gene            3859..4182
                     /locus_tag="PXE92_001781"
     CDS             3859..4182
                     /locus_tag="PXE92_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL5761003.1"
                     /translation="MNELYDAPIPQATREKFGIQPFDAAEYLANDELIALYLAETLKD
                     GTDEEFIQALNTVARAKGMNELAKKAGIGRESLYQSLSSSKPRFETIRKIISALNLEL
                     SVVKA"
     gene            complement(4172..6058)
                     /locus_tag="PXE92_001782"
     CDS             complement(4172..6058)
                     /locus_tag="PXE92_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5761004.1"
                     /translation="MTQLDSVTVYSAYATPINQDKTASSVTVLTEKDFAARNATYVSD
                     VLKTVPGVAIGQQGGRGTLTSLFLRGAESRHTAVVIDGVKVNPINIGNFDFGGLPISN
                     IERIEVLRGEQSALWGSSAMGGVVYITTKSGLYKEKPFNAEVDLGLGSNNTRDASATL
                     SGFHNGFYYALHGDSHRTKGISALSKNHFSYTTETGSEVKTGGASERDGFHRDNGSLR
                     LGYDLGNKGVEVLAAQSSQTVHIDGYNSDVSGEYSRTRNQTFKLGGYWGNEQELLKHQ
                     ANISQFNSKATHFGSNARYSNEKQLNANYQLDVNFDREGEVTQAVSLLTDYAKTRYTS
                     DKYLREKTLSEKSAALEYRLFTEQDHSFSISGRYTDNSQFKNSITGRISGAYRLSPNL
                     CSDRLLLELAEPQQIRAMSPYSQKPLMMLDKLNTDKPTVEPELTALLPYADSTILLNE
                     TFYPQLTARLKQLGFKLVALNDSPQTPEQLFTLILQLGELTQNQAKAEKLVERLRLQK
                     IPLKQPLAETLILSETGMIEPHFPQYQTLLDLLGLSPLKSDLTPQNFSLEKLLLAQPK
                     QLLFLTDNQSYNNQAELLKHPALQKIWQKMSQNPPLVLPMKYTYCFDHGVWQGIQLMH
                     KLTP"
     gene            6088..6888
                     /gene="metF"
                     /locus_tag="PXE92_001783"
     CDS             6088..6888
                     /gene="metF"
                     /locus_tag="PXE92_001783"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HDL5761005.1"
                     /translation="MQQKWRMLWDSIDRLSPLKPKFVSVTYGANSGERDRTHSIVKSI
                     QEKTGIISAPHLTGIDATPEELKVIAKDYWDSGIRRIVALRGDIPKGYDKALFYASDL
                     VALLKSVADFDISVAAYPEVHPEAKSAQADLLNLKRKIDAGANHVITQFFFDVESYLR
                     FRDRCVSIGIDCEIVPGILPVTNFKQLQKMAAVTNVKIPTWMGKMYEGLDDDQTTRNL
                     VAASIAMDMVKVLSREGVNDFHFYTLNRSELTYAMCHTLGVRPDLTTA"
     gene            complement(6937..8097)
                     /locus_tag="PXE92_001784"
     CDS             complement(6937..8097)
                     /locus_tag="PXE92_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761006.1"
                     /translation="MKKSILLILSLFSASLFADVQLSPLPLPQIGKVSQFDLSEQGEL
                     VVINQQKQLWRVTQQAQKLADGVSTEIEPKAQYQRIALADQNGHFMLWTADKIYTSNI
                     PLAPKATMTALNFATIAVTKQNGQFKLARIETQGNQATITATAETEVLPDAHPLQIDF
                     DAETPNQGHIAVLAKPDDFTYQHGVLGDDVEAGEIQFLERHTLNPLAEKLTQQGRVFE
                     ANRWATFTENGKTKIVSVISGDGNGASTVVIGVKDGKLSIEAESEPLSTNRWQSPFIF
                     NRKLYAIQMPHLKGNLVEYSLKGNQLAERFITSGLSNHRYGDHETNLVATTETFALIP
                     QMGYQQVVVLDKTGKITELPTALPAGIKQTKADSNKAYLLLKNGEIWVAEEK"
     gene            complement(8157..9173)
                     /gene="galE"
                     /locus_tag="PXE92_001785"
     CDS             complement(8157..9173)
                     /gene="galE"
                     /locus_tag="PXE92_001785"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDL5761007.1"
                     /translation="MAILVTGGAGYIGSHTLVELLNENREIVVLDNLSNSSEVSLERV
                     KQITGKSVKFYQGDILDRDILRKIFAENQIESVIHFAGLKAVGESVREPLRYYQNNVT
                     GSIVLVEEMLKANVNTIVFSSSATVYGDPQIIPIVESCPVGGTTNPYGTSKYMVERIL
                     EDTVKAFPQLSAVVLRYFNPVGAHESGLIGEDPNGIPNNLMPFISQVAVGKLPQLSVF
                     GGDYNTHDGTGVRDYIHVVDLALGHLKALDKHQNDAGFHVYNLGTGTGYSVLDMVKAF
                     EAANGITIPYKVVDRRPGDIAVCYSAPQKALEQLGWETERGLEQMMKDTWNWQKNNPN
                     GYKG"
     gene            complement(9261..9422)
                     /locus_tag="PXE92_001786"
     CDS             complement(9261..9422)
                     /locus_tag="PXE92_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HDL5761008.1"
                     /translation="MNETLLNNLVCPVSNEKLEWDKENNRLINPKLNIAYPIKNGIPE
                     LLPEAGVAL"
     gene            complement(9400..10401)
                     /gene="lpxK"
                     /locus_tag="PXE92_001787"
     CDS             complement(9400..10401)
                     /gene="lpxK"
                     /locus_tag="PXE92_001787"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HDL5761009.1"
                     /translation="MKIWQTKSLITWLLSPLSLLFWLISQARKRLYSLNILQSYRSPL
                     PMLVVGNISVGGNGKTPVVVWLVEQLQQRGVKVGVISRGYGGKAKTFPQLVTRESSAE
                     MVGDEPVLIVQRTNVPLAISPNRQQSIELLLNQFEPDIIITDDGLQHYALQRDMEWVV
                     VDGVRRFGNGFVLPAGGLRELPSRLNSVQAVICNGGTPQANEHLMTLEPSDAINLVTN
                     QRKPLSEFTQPCVAIAGIGHPPRFFTMLEKLGIPLAKTQGFADHQAFDKAQLAQFADS
                     QTPLLMTEKDAVKCHDFAQPNWWYVPVSATFSEKSTACLLAPILQKLGKEDERNTTQ"
     gene            complement(10403..10807)
                     /locus_tag="PXE92_001788"
     CDS             complement(10403..10807)
                     /locus_tag="PXE92_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5761010.1"
                     /translation="MKVHEKIKLLRENNHWTQDEMAQKLSMTTKGYAKIERGETISNL
                     PKIEQIAEVFNMDICELLSYGEEGKIYINNTDNNLTNSFISLGNGVEEIQRLQLIISH
                     KDELLAHKEEIIENQKRELALLRDLVETLKNK"
BASE COUNT         3131 a         2301 c         2393 g         3234 t
ORIGIN      
        1 taagccttat ggtttattgg cgagatcttc ttattttgca cgtttagcag aatggacttt
       61 attagaacat ttacttgtca aacagcctga aaatatttcg gtatgttcat tcggtcaatc
      121 attcggtaca agcggtcgtt tagatgcaga atattaccaa cctaaatttg caagcttatt
      181 tgcacaatta gccaatttca aaacgatgaa attaggtgag attgttaatt tacaaaaatc
      241 ggtagaaccg ggctcggaag cttatcaaac agagggaata ccctttgtgc gtgtatcgga
      301 tttatctaaa ttcggcatca gccaaacaga taaatactta catccgaaag attttggcaa
      361 tgttgtaaga cctaaaaaag acagtatatt actgactaaa gacggcacag tcggcattgc
      421 ttaccgtgtt ccgcaagatt tgaatgtgat tacatcaggg gcaattgtgc atctagagct
      481 taaaactgac gaagttttac ccgattattt ggcgttagca ttgaattctc ctgctgtaca
      541 attacaagcg gaaagagatg cgggaggctc tattatccaa cattggaaac cgtctgaaat
      601 tttagatgta gtgattccgg tattacctaa aaatatccag caaaccatta gcgacaaagt
      661 acaacaaagt tttgcattga gagtagaaag tgaagtttta ctggaaaaag ctaaaatact
      721 tgtagaacaa gaaatagaaa atatgaggta ataatgccta atcataatca agatttgaaa
      781 aaagagtggt ttaataaagc aaggatagat taccactctc cttttttaat gttatggctc
      841 agttgtaata gctggtataa cttccattat tccttaggta aggatagaac acatattgat
      901 agaataaaat cggataccag taatcaaaac aaactttata aagagtttga aagaatattc
      961 acctctggaa aaataaaaga aaaaactaat ttatggaata atattgagca acttcatttt
     1021 gcattagttc aggcagagtt aaaatattca ggtagcaata ttccaagtga atattctaaa
     1081 tttaacttgg aaaatgtgct tattgatttt cctaacaaga caaattctgt agcatatcag
     1141 aatctagtta ttcacaacgc aaaaacgcgt gcaggaaaat taaaaacaca atatgcaaat
     1201 gctcacgatt taggcaattt ggttttagta gaggatatcc aaaaaatatt ttccgggtta
     1261 ttagaaataa tttatcaagt tcgttgccat ttggtacatg gtagcttaag tccaacacct
     1321 gaaaaccacg aagttgttaa atattgctat ttgattttgt gggattgttt aaaaggattt
     1381 tgtgattagt tattgtcaat aaagctacaa gcggtcaatt ctcccaaaac tttgcaaatt
     1441 tccccgcaaa actgaccgct tgttctcctc tatccattca cctcaaccaa cttttctctc
     1501 tacccctact caaaatcggt taaacaatct gttgaggtaa atgttgtgtc ggaatgggat
     1561 ttaatcttaa tgaaactgaa aaaatcttct gccaagcaaa tttccctaaa attggaagtt
     1621 catttccaat ttctcaaaaa atcacccaaa ccggaactac acttccaatt tttcaatccc
     1681 ccacatttcc cttttctccc aatccatttc agctttcacc ccaaaagccg ttgcaatatt
     1741 ttcggcattt aagaccgctt gtgtgttgcc gctgacgagt aaattgccgt ttttaagcag
     1801 aatgatttca tcacaaaaac ggtaggcaag gggcaaatga tgaatcacca ccacgcaggt
     1861 ttgtgttgga gttagggctt tgagctgctg cataatatcg atttggtagt aggggtcgag
     1921 ggcggcaatc ggttcatcgg caagcaagat cggggcttgt ttcatcaaac aacgggcgag
     1981 ttgcactcgg gtctgttcac cgccggagag ctgttggtaa gtgttgtcca gcaggtgaga
     2041 aatcgccaat tgttcggcaa ccgaacgcac cttttgacgc tcttgttcag gcggaagcgg
     2101 tgcgggcaag ccgagtgcaa tcacatcata caccgaaagt tgccacgcca cgttgagctg
     2161 ttgggcgagg taggcaaatt gtcggctcct ctcaacggcg gaaagggcgt gcagtttgca
     2221 attttccagc caaatttcac cgcttgtcgg gcgtagaatg ccggcaatcg ctttgagcaa
     2281 cgaggatttc cctgccccgt ttgcgcccat aatgccgatc aatttgcctt ttggcagata
     2341 gcaagagagg tgttgaatac cgtgggcaag ggtgagattt tcaatcttga tcattgtgcc
     2401 aatctccatt gctgggtgaa taaaatccaa atcaaaaacg gtacgcccaa aattgccgtg
     2461 agcgtgccga tgtaaattcg ggcaaaaaac ggcacatatt gcaccgccag atctgcaatc
     2521 agcagtaaca acgccccgat taaagcggag gtaagataaa gctgggacgg cggttttttc
     2581 agccaaatac gggcaagatg aggggctatc aagccgataa aaccgatggt gccggtctgt
     2641 ggaatcgttg ctccgaccaa cagcgccacg ccaatgctaa cggtaaaaaa actgcgttgc
     2701 aggttgatgc ccattgttgc tgccgtctct tcgccaaagg tgagcaggtc gagataacgc
     2761 cgttcccgat agaggcagac aatgccgagc aagatcaacg gtaacgccca acatactgcc
     2821 tctgcggttg cccagactaa tgagccttgc aaccagcggt agagttccgc caacgcccac
     2881 gggctttcgg cattggaaag cagtaaagtc accgctgccc cgagcaacac gtttaccgcc
     2941 acgccactta aaatcatcat tgttgtgccg tggcgaaagc taatcagcca caccagcaaa
     3001 aatgccccca gcgcccctgc cacaccgcca aacagtagcc agcccatcgg ggctgaaaaa
     3061 tagtagagca gaaatacgct caccgccgtt gcccccgaac tgctcccaag caaaccgggg
     3121 ctggcaagcg gatttttaaa cacgccctgc atcgcattgc cggcaagcgc aaggctggcg
     3181 cccgtcagca ccgccaagcc aatacggggc agtcgaattt cacccagcac cagccagcgc
     3241 agatcgctta gcacgccttc cgcattttta agcaaggcaa aatcgctcag ttggtaaaag
     3301 gctgcgttgc taacaatcag caacaacaag cttccaagca caatgtttaa tttcttcatt
     3361 cttctttctc tcatcaaacg tgcaaattat accatagcgc caaagtcaag ctgaaaacgc
     3421 tatttttgcg atcatcatcg aaaaactagc gtttgccgaa tgtaacccac gacaggcttt
     3481 gctatattcc ttcaatcagc ctaagttttg tatttaaaac attacagatt gggggtagaa
     3541 tgtaccatat tgaacgcact gaaattttcg accaatggct tgaaaattta aaagatccac
     3601 ttgctgtggt gaccattgca agacgtattg aacgtgccga aagcggaaat tttggcgata
     3661 ccaaatatat cgcagaagga atttccgaaa tgaggctaaa cgtcagcaaa ggttatcgcc
     3721 tttactatgc gcaaaaaggt agcattattt atatactact aaatggcgga cataaaggca
     3781 cgcaacaagc tgatattgat aaagctaaaa tgctatgggc agaaattaaa caacatatgg
     3841 cagaacagga gaaaaagaat gaacgaatta tatgacgccc caattccaca agctactcgt
     3901 gaaaaatttg gcattcaacc tttcgatgcc gctgaatacc tcgccaatga cgagctaatc
     3961 gccctttatt tggcggaaac attgaaagac ggcacggacg aggagtttat tcaagcattg
     4021 aataccgtgg cacgagcgaa aggaatgaat gagttagcga aaaaagcagg gatcgggcgt
     4081 gaaagtttgt atcaaagcct ttccagcagt aagccccgtt ttgagactat ccgcaaaatt
     4141 attagcgcat taaatttgga gttgtcggtc gttaaggcgt aagtttgtgc attaattgta
     4201 tcccctgcca aaccccgtgg tcgaaacagt aggtgtattt catcggtagg acaagcggtg
     4261 gattttggct cattttttgc catatttttt gtaatgctgg gtgtttgagc agttcggctt
     4321 ggttgttata gctttggtta tcggtgagga acaataactg tttgggttgc gctaacagca
     4381 gtttttctag cgagaaattc tgtggcgtga ggtcgctttt taatggtgac agaccgagaa
     4441 gatccaacaa cgtttgatat tgcggaaaat gcggttcgat catacccgtt tcgcttagaa
     4501 ttaaagtttc agcaagcggt tgttttagcg gaattttttg caaacgtagc cgttccacca
     4561 gcttttccgc tttggcttga ttttgggtta gctcgcccag ttgtaaaatc agtgtgaaaa
     4621 gctgttcggg tgtttgcgga ctgtcgttta atgcgactaa cttaaagcca agctgtttca
     4681 gccgtgcggt gagttgcgga tagaaggttt cattcagcaa aatggtgctg tcggcatagg
     4741 gcaacagggc ggtgagttca ggctcaacgg tgggcttgtc cgtgttcagt ttatccaaca
     4801 tcatcaacgg cttttgggaa tagggcgaca tcgcccgaat ttgctgtggt tcggcaagtt
     4861 ccagcaacag acggtcgcta cacaaatttg gcgataaacg gtaagctcct gaaatacgcc
     4921 cagtgataga atttttaaac tgtgaattat cggtgtaacg gccactaata gaaaaactgt
     4981 gatcttgttc ggtaaataag cgatattcta gtgccgcact tttttcggat aaggtttttt
     5041 cacgcaaata tttatcagag gtatagcgtg tttttgcata atctgtcagt aaactgaccg
     5101 cttgtgtcac ttctccttca cggtcaaagt ttacatctaa ttgataattc gcattaagtt
     5161 gtttttcgtt gctgtagcga gcatttgaac cgaaatgtgt tgctttacta ttgaattggc
     5221 tgatatttgc ttggtgtttc agcagctctt gttcatttcc ccaataaccg cctaatttaa
     5281 aagtttgatt gcgagtacgg gaatattcac cgctaacgtc tgaattatag ccatcaatat
     5341 gaacggtttg ggaagattga gcggcaagaa cttctacccc tttgttaccg aggtcataac
     5401 ctaaacgtaa agagccgtta tcacgatgaa agccatctcg ttcgcttgca ccaccggttt
     5461 tcacttctga gcctgtttct gtggtatagc tgaaatggtt tttactcagt gcggaaatgc
     5521 ctttggtacg atggctatca ccgtgtaagg catagtagaa accgttgtga aatccggaaa
     5581 gtgttgcgct ggcatcacgg gtattatttg agcctaaacc aagatcgacc tccgcattga
     5641 atggtttctc tttgtataaa ccgcttttag tggtgatata aactacacca cccatagcac
     5701 tgcttcccca aagggcggat tgctcgccac gcaacacttc gatacgttcg atattgctaa
     5761 tcggtaagcc accaaaatcg aaatttccaa tattaatcgg attgactttt acaccgtcaa
     5821 tcacaaccgc agtatggcga gattctgccc ctcgtaaaaa taagctagta agagtaccac
     5881 gcccaccttg ttgcccaatc gccacgcccg gcacagtctt taacacatca ctcacataag
     5941 tcgcattgcg tgcggcaaaa tctttttcgg taagaaccgt cacgctggaa gcggttttgt
     6001 cttggttgat tggggttgca taggcggaat agactgttac ggaatcaagc tgagtcatct
     6061 cattttgtgc aaaagctgta cttgctagtg caacagaaat ggcgaatgct gtgggattct
     6121 attgatcgcc taagtccttt aaaaccgaaa tttgtttcgg taacttatgg agcaaattct
     6181 ggtgagcgag atcgtacaca cagtattgtg aaatcaatcc aagaaaaaac agggatcatt
     6241 tcagctccgc acttaacagg cattgatgca acaccggaag aattaaaggt aattgccaaa
     6301 gattattggg atagtggtat tcgccgaatt gttgctttgc gtggcgatat accgaaaggt
     6361 tatgataaag cactatttta cgcctcagat ttagtcgctt tattaaaatc agtagcagat
     6421 ttcgatattt ccgtggctgc ctaccctgaa gttcaccctg aagcaaaatc agcacaggca
     6481 gatttactta acttgaaacg taaaatcgat gcgggtgcaa accacgttat tacgcaattc
     6541 ttttttgatg tagagagtta tttacgtttt cgtgatcgct gtgtttctat tgggattgat
     6601 tgtgaaattg tgccgggtat tctgccggtg acaaatttca agcagttgca aaaaatggca
     6661 gcagtgacta atgttaagat cccgacttgg atgggtaaaa tgtacgaagg gttagatgat
     6721 gatcaaacca ccagaaactt agttgcagca agtattgcaa tggatatggt gaaagtgctt
     6781 tctcgtgaag gggtgaatga tttccacttc tataccttaa atcgtagtga actcacttat
     6841 gcaatgtgcc atactttagg cgtaagacct gatttaacaa ctgcataatc gaacattaag
     6901 gctgtatagc taaatgagct atacctcctt atagttttac ttctcttcag ccacccaaat
     6961 ctcgccattt tttaataata aataggcttt gttggaatcg gctttggttt gtttaattcc
     7021 agccggcagg gcggttggca attcagtgat cttgcctgtt ttatccaaca caacaacttg
     7081 ttgatagccc atttggggta tcagtgcgaa agtctctgtt gtcgccacta aattggtttc
     7141 gtgatcacca tagcggtgat tgcttaagcc ggaggtaata aaacgttcag ctaattggtt
     7201 tcctttcagg ctgtattcaa ccaaattgcc ttttagatgt ggcatttgga ttgcatagag
     7261 cttgcggtta aagataaacg gcgattgcca acggttagtc gacagcggct cactttcggc
     7321 ttctattgat aattttccgt ctttaacgcc aatcacaaca gtgctggccc cattgccatc
     7381 gccagagata acagaaacga tcttggtttt tccattttct gtgaaagtcg cccagcggtt
     7441 ggcttcaaat actcgccctt gttgggtgag tttttctgct aaggggttta gggtatggcg
     7501 ttctagaaat tgaatttcgc ctgcctctac atcatcgcct aatacaccgt gttgatatgt
     7561 aaaatcatca ggctttgcaa gtacagcaat atgcccttgg ttaggtgttt cggcatcaaa
     7621 atcaatttgc agagggtgag catcaggcaa cacctcggtt tctgcggtgg cagtaatagt
     7681 ggcttggttt ccttgcgttt caattctggc taacttaaat tgtccgtttt gtttggtcac
     7741 ggcaatggtg gcaaaattaa gggcggtcat tgtagctttc ggggcaaggg gaatgttgga
     7801 ggtatagatt ttatcagccg tccacagcat aaaatgcccg ttttgatccg ctaacgcaat
     7861 tcgttggtat tgagctttag gttcaatctc ggtggaaact ccatctgcca gtttttgagc
     7921 ttgttgtgtg actctccata attgtttttg ttggttaatt accactaatt cgccttgttc
     7981 tgaaaggtca aattggctta ctttgccaat ttggggaagt gggagtggag aaagctgaac
     8041 atcagcaaac aaagaagcgg agaacaagct taagattaac agaatagatt ttttcattag
     8101 cgttacctaa aaagaagatt taaatgataa agggagatgt tatctccctt tacgctttag
     8161 cctttataac cattcgggtt atttttttgc caattccaag tgtctttcat catttgttct
     8221 agcccacgct cggtttccca acccagttgc tctaacgctt tttgtggagc ggagtagcaa
     8281 acggcaatat cgcccgggcg gcgatctacc actttgtatg gaatagtaat gccatttgcg
     8341 gcttcaaagg cttttaccat atctagcacc gaataacctg ttcctgtgcc taaattgtaa
     8401 acgtggaaac cggcatcatt ttggtgcttg tctaaggctt ttaagtgacc aagtgctaaa
     8461 tctaccacgt ggatataatc acgcacacct gtgccatcgt gagtattata atcgccacca
     8521 aacaccgata attgaggtaa tttgcccaca gccacttggc tgataaacgg cattaagtta
     8581 tttgggatac cgtttggatc ttcaccgatt aaaccgcttt cgtgagcccc taccgggttg
     8641 aagtaacgca atactaccgc acttaattgt gggaaggctt taacggtatc ttcaagaatg
     8701 cgttcaacca tatatttgga cgtaccgtaa gggttggttg tgccaccgac agggcaagat
     8761 tccacaatcg ggataatctg cggatcacca taaacggtcg ccgatgaact aaacacaatg
     8821 gtattcacat tggcttttag catctcttct accaatacaa tcgagccggt tacattgttt
     8881 tgatagtaac gtagcggttc tctgacgctt tcgcctacag cttttaaacc ggcaaagtga
     8941 attaccgatt caatctgatt ttccgcaaaa attttgcgta aaatatcacg atctaaaata
     9001 tcgccttgat agaattttac gctcttgccg gtgatctgct tcacacgctc aagtgatact
     9061 tcagaggaat tagaaagatt atctaacacc acgatttcac gattttcgtt taataattca
     9121 actaatgtat gtgaaccgat gtagcctgca ccacctgtaa ctaaaattgc cattttatgt
     9181 tcctctataa aattaatacg aaccaaggtt attgttgcta ttttacccga tttaatcagg
     9241 cttgctaata tttattcagt ttataatgcc actccggctt ccggcagtaa ttccggaatg
     9301 ccgtttttaa tcgggtaagc aatattgagc ttagggttaa ttaatcggtt gttctctttg
     9361 tcccattcta atttttcatt agagacaggg cagacgaggt tattgagtag tgtttcgttc
     9421 atcttctttt cctagttttt gtagaatcgg ggctaacaaa caagcggtcg atttttctga
     9481 aaatgttgca gaaaccggta cataccacca atttggctgt gcaaaatcgt ggcattttac
     9541 cgcatctttc tcggtcatta ataacggcgt ttggctatca gcaaattgag ccagctgagc
     9601 cttatcaaag gcttgatgat cggcaaagcc ttgagttttg gcaagcggaa tgcctaattt
     9661 ttctaacatc gtaaaaaagc gtggtgggtg accgataccg gcaatcgcca cacagggttg
     9721 ggtaaattcg cttaatggct tgcgttgatt ggtgactaaa ttaattgcat cagacggttc
     9781 aagcgtcatt aaatgctcgt tagcttgcgg tgtgccgccg ttgcaaataa ccgcttgcac
     9841 ggagtttaaa cggctcggta attcacgcaa tccgcccgcc ggcagcacaa aaccgttacc
     9901 gaaacgcctt acgccatcaa ccaccaccca ttccatatct cgctgtaggg catagtgttg
     9961 caagccatca tcggtgatga tgatgtccgg ctcaaactga tttaatagta attcaatgct
    10021 ttgttggcgg tttggagaaa tagccaaagg cacattggtt cgctgaacaa tcagaaccgg
    10081 ttcatcaccc accatttcag cagaactttc tcgggtaact aattgcggaa acgttttcgc
    10141 tttaccgcca tagcctcgag aaatcacgcc tacttttacg ccacgctgtt gcagttgttc
    10201 caccagccaa acgaccactg gcgttttgcc gttgcctcca accgagatat taccgactac
    10261 cagcataggc aaaggcgaac ggtacgattg caaaatattc agagaatata accgcttgcg
    10321 agcttgacta atcagccaaa acagcaacga aagcggcgaa agcagccaag tgataaggga
    10381 ttttgtttgc cagattttca tattatttat ttttaagtgt ttcaactaaa tctcgtaata
    10441 aggctaattc acgtttttgg ttttcgataa tttcttcttt atgggctaat aattcatctt
    10501 tgtgggagat aataagttgt aaacgttgaa tttcttctac tccatttcct aatgagataa
    10561 atgaattagt gagattatta tctgtattat ttatgtaaat ttttccttct tccccatagg
    10621 ataataattc gcaaatatcc atattaaata cttctgcgat ttgttctatt ttcggtaaat
    10681 tagagatagt ttcaccacgt tctatttttg cataaccttt ggttgtcata cttaattttt
    10741 gagccatttc atcttgtgtc caatgattat tttctcgcag taatttgatt ttttcgtgta
    10801 ctttcatata acacctatag attgtgggag ttgggatata acttgatgtg gtaaaggata
    10861 aattttgtgg attgtagcag tttattgagc aatttagaat agagtaaatt ttatcttaag
    10921 ctcacaggag aagaaacatt catgaataat caatataatc cattatatgg aatgctaggt
    10981 attttagcgt cagctgcatc agtaattttg cctctttatg cagcatataa agactatcaa
    11041 tttggggaga atatgttat
//
LOCUS       DANMBQ010000085        11007 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.085, whole genome shotgun sequence.
ACCESSION   DANMBQ010000085 DANMBQ010000000
VERSION     DANMBQ010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11007)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11007)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11007
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.085"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(39..1328)
                     /locus_tag="PXE92_001789"
     CDS             complement(39..1328)
                     /locus_tag="PXE92_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDL5761011.1"
                     /translation="MDSIPLSSLFITLAILLVLSAFFSGSETGLMSLNRYKMRHLAEQ
                     GHKGAKLAEKLLARTDVLLSLILICNNLVNIAASAIATMIGMQLSGEAGVAIATGLLT
                     FVMLVFSEILPKTVAAIYPEKVGFFASFVLTPLKKLLSPIVFLMNLIIAGLMKLLRIQ
                     QKDKQGLSSEELRSVVLDAGKFIPAEHREMLVSILDMEKVTVDDIMVPRNDISGIDID
                     DDWKAIMRQLNHAPHARVIIYKGDMDNNIVGILRVREAFRLMLEKNEFTKEMLLRATD
                     EVYFIPEGTPLTTQLMNFKANKERIGLVVDEYGDIKGLVTLEDILEEIVGEFTTSSAP
                     TLEQEVQQQSDGTVIIEGSANLRDLNKLFDWDLPLEEARTFNGLILEHLEKIPDEGME
                     FELYNLKVMILEVSENMVKQAKVEHLSPKIEKEQDSA"
     gene            complement(1452..2249)
                     /gene="ccsA"
                     /locus_tag="PXE92_001790"
     CDS             complement(1452..2249)
                     /gene="ccsA"
                     /locus_tag="PXE92_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDL5761012.1"
                     /translation="MLLPLLSIVAYALALLWVAPTLVNLENAATVNKKPNMMLVFGFG
                     LLATILHFSVLYNELFLIEGQNFTVTNVISLMSFIMAACVTLALLKWKTVWFPLIIVY
                     SFAICSVGVAGFVKGSFIRNVQENAGLLFHLGIALFSYALFFLALIYAFQLKWLDRKL
                     KSKTMFFCQILPPLMTVERHFFTLTLAAQAMLTLTLFSGVVYLHNFFEPEHIHKAIFS
                     FLAWLVYSIQLLGQWKLHWRGKRVLIYSISGMMLLTIGYFGSRLIVN"
     gene            2465..2989
                     /gene="yceD"
                     /locus_tag="PXE92_001791"
     CDS             2465..2989
                     /gene="yceD"
                     /locus_tag="PXE92_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HDL5761013.1"
                     /translation="MQKVKLPLTIDPYKDAQRRVDYEGYISGKLLTRLGESVCNVQSD
                     AQVTLSLYVDPQRLTVIKGTAKVDVEFDCQRCGDPFTQTLDCSFVFSPVSNMDQADIL
                     PEIYEPIEVNEFGEVNLLDMIEDEFILELPLVPMHSEEHCEVSVSEQVFGELPEELVQ
                     KPNPFAVLANLKKN"
     gene            3006..3176
                     /gene="rpmF"
                     /locus_tag="PXE92_001792"
     CDS             3006..3176
                     /gene="rpmF"
                     /locus_tag="PXE92_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006231206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDL5761014.1"
                     /translation="MAVQQNKKSRSRRDMRRSHDALTTAAVSVDKTSGETHFRHHVTA
                     DGYYRGRKVINK"
     gene            3195..4217
                     /gene="plsX"
                     /locus_tag="PXE92_001793"
     CDS             3195..4217
                     /gene="plsX"
                     /locus_tag="PXE92_001793"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDL5761015.1"
                     /translation="MVDITLAVDVMGGDFGPRVTIPALEKALKQNPSLSFLLFGDEHQ
                     IAPLLQKHTLLNHPKIQIHHTEQVIEADVPFTTAIRQSKNSSMRLAIEAVKEGKAQGC
                     VSGGNTGALMGLAKLLIEPLPNIERPALTSLIPTLNGKSSVMLDLGANIEVSNHQLQQ
                     FAEMGNLFAQVMLDLVYPRLSLLNIGTEENKGTAQLQAVHQLLKNRQDLNYTGFIESD
                     KLTSYLTDVIICDGYTGNIALKALEGAAKNIISLFKKEKADSNICRNTKRYLLKAMFY
                     RYYRKLQQINPDRHNGATLLGLSKVVVKSHGGANINAFYYAIDYAVQQIQGDIPNKIL
                     EGLTQK"
     gene            complement(4314..5597)
                     /gene="hisD"
                     /locus_tag="PXE92_001794"
     CDS             complement(4314..5597)
                     /gene="hisD"
                     /locus_tag="PXE92_001794"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDL5761016.1"
                     /translation="MQTLIWNNLTETEQQQYLARPAQVVGESIKAAVNEIKANVIANG
                     DKALFELAEKFDKVKLESLVVSEQQIQQAQSRISPELKQAIQNAKANIEAFHKAQQNQ
                     EVDIETQPGVCCQVITRPINAVGLYIPGGSAPLFSTVLMLAVPAKIAGCNKIVLCSPP
                     PIADEILYTAHLCGVETIYAVGGAQAIIAMANGTQTVAKVDKIFGPGNAFVTEAKRQV
                     VQEGTAIDMPAGPSEVLVIADEFADPAFVASDLLSQAEHGADSQVILVTPSESLARAV
                     DEELEKQVAVLPRAETARKALAHSRTFIAENLQQAVEISNKYAPEHLIVQTENARSLL
                     ADLDNAGSIFLGAYSPESMGDYASGTNHVLPTYGYTKTYSSLGLADFSKRMTVQELTP
                     QGFLALAETVERMASAELLDAHRNAVSLRVAKLKG"
     gene            complement(5609..6508)
                     /gene="hisG"
                     /locus_tag="PXE92_001795"
     CDS             complement(5609..6508)
                     /gene="hisG"
                     /locus_tag="PXE92_001795"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDL5761017.1"
                     /translation="MTTQNRLRIAMQKKGRLSQECSELLKQCGVKIIWNDQRLIAYSE
                     NMPIEILRVRDDDIPGLVFDGVVDLGIIGENVLEEVELGRLSAGENVAYKKLRQLDFG
                     GCRLSLAIDRDKNYNNIKDLEDAVIATSYPNLLKRYMKEQNVPFKSILLTGSVEVAPS
                     AGIANAICDLVSSGATLEANGLKEVEVIYRSTACLIQRQEPLSAEKQALVDKLLTRIQ
                     GVQQANESKYIMLHAPKDKLAEITALLPGVENPTILPLANDQTRVAMHVVSQENLFWE
                     TMEQLKEMGASSVLVLPIEKMLA"
     misc_feature    complement(6541..6668)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            6867..7724
                     /locus_tag="PXE92_001796"
     CDS             6867..7724
                     /locus_tag="PXE92_001796"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDL5761018.1"
                     /translation="MQISLKKIYSGKVRDLYEIDEKRMLMVATDRLSAFDVILDDPIP
                     RKGEILTQISNFWFNKLAHIMPNHFTGDSVFDVLPQEEAEAIQHRAVVCKRLIPVKIE
                     SIVRGYLTGSGLKDYQQTGTICGLTLPEGLVEASKLPQPIFTPSSKAEVGDHDINISY
                     EECERQIGQELAAKVRDAALKLYTEAANYALTKGIIICDTKFEFGLDENGELTLMDEV
                     LTPDSSRFWSVETYREGTNPPSFDKQFVRDWLENSGWNKQPPAPKIPAEVIEKTVAKY
                     QEALDLLTK"
     gene            complement(7865..9346)
                     /gene="ilvC"
                     /locus_tag="PXE92_001797"
     CDS             complement(7865..9346)
                     /gene="ilvC"
                     /locus_tag="PXE92_001797"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDL5761019.1"
                     /translation="MANYFNTLNLRQKLDQLGRCRFMDRDEFADGCNFLKGKKIVIVG
                     CGAQGLNQGLNMRDSGLDIAYALRAEAIAEKRASFKRASENGFVVGTYEQLIPEADLV
                     INLTPDKQHSKVVADVMPLMKQGAAFGYSHGFNIVEEGEQIRPDLTVVMTAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGLAIAKAWASATGGDRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSIVCYDKLVSEGKDPAYAGKLIQYGWETITEALKQGGITLMMDR
                     LSNSAKLRAFELSEQIKEELAFLFEKHMDDIISGEFSSTMMADWANGDANLLKWREET
                     GKTAFENAPQADGIKISEQEYFDNGVLMVAMVKAGVELAFDTMVSAGIYEESAYYESL
                     HELPLIANTIARKRLYEMNVVISDTAEYGNYLFSHVATPILAEKIIPTLEKGDLGEPT
                     PAVEIDNVTLRDVNDAIRNHPIELIGQELRGYMTDMKRISSQG"
     gene            9568..10803
                     /locus_tag="PXE92_001798"
     CDS             9568..10803
                     /locus_tag="PXE92_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HDL5761020.1"
                     /translation="MKINRIILQSCSECGQQVRVPLTSNGNAVCPVCHNILRKSNTWS
                     LHRSAFLALAILILLPFALTFPLMSIDLLGIKINATVWDGIWKMATEGYPYTAFMVLV
                     CAVIMPIAFVLLILTIQLQRIIRQRPRYTLIFLTKIKEWVMLDVYLVALAVAAFKIRD
                     YADLQFDINLIAFVLVTLLNTLLFIKTEPKQAWERFYPEYHALPFDHPSNPTLCPTCE
                     YCFDETILDLKGRQRCPRCESNLSISDNVKIQRVWACLIAGTIMMIPANIFPISTTEL
                     AGQVSADSLMSGVLLFMEMGSYTVAAIVFIASIAVPVSKITIIFYLLLAIHYKWKHPI
                     HWQMKLLHYVHFVGRWSMLDLFVLSLMMSLLERGQILSFSVGEAAFYFGAAVFLTMFA
                     SANLDSRMLWKIHTVQKTS"
BASE COUNT         3275 a         2459 c         2076 g         3197 t
ORIGIN      
        1 tacaaataat gtgttattta ctttcttttt tcttaaaatt aggctgaatc ttgctctttt
       61 tcaattttcg gtgaaagatg ttcaactttc gcttgtttaa ccatattttc actcacttca
      121 agaatcatca ctttcaagtt gtagagttca aattccattc cttcatcagg aattttttct
      181 aaatgctcta aaatcaagcc gttaaaggtt ctggcttcct caagcggtaa atcccaatca
      241 aatagtttgt tcagatcacg caggttggct gagccttcaa taatcaccgt accatctgat
      301 tgttgctgaa cttcttgctc aagggtcggt gctgatgaag tcgtaaattc acccacaatt
      361 tcttctaaaa tatcttcaag agtgactagc cctttaatat caccatactc atcaaccact
      421 aaaccaatac gctctttatt cgctttaaag ttcattaatt gtgtagtgag tggtgtgcct
      481 tcaggaataa aatagacttc atctgttgca cgcagtagca tttctttggt aaattcgttt
      541 ttctccaaca ttaaacgaaa ggcttcacgc acccgcaaaa tcccaacaat attgttgtcc
      601 atatcccctt tgtagataat cacccgagcg tgaggggcgt gattaagctg acgcataatc
      661 gctttccagt catcatcaat atcaatgccg ctgatgtcgt tgcgaggcac cataatgtca
      721 tcaaccgtca ctttttccat atctaaaata gagaccaaca tttcacggtg ttcggcagga
      781 ataaatttac cggcatcaag cactacacta cgcagctctt cggagcttaa gccttgttta
      841 tctttttgtt gaatccgcaa taatttcatc agcccggcaa taatcaaatt cattaaaaat
      901 acaatcgggc tgagtaattt tttaagcggt gttagcacaa agctggcgaa aaaaccgact
      961 ttttcagggt aaattgccgc tactgtttta ggtaggattt ccgaaaaaac caacattaca
     1021 aaagttagca aaccggttgc aattgccaca ccggcttcac cggataactg cataccgatc
     1081 atcgttgcaa tcgcagaggc ggcaatgttg actaagttat tacaaattaa gataaggcta
     1141 agtagcacat cggtgcgtgc caagagtttt tccgccagtt tcgccccttt atgcccttgc
     1201 tcggcaaggt gacgcatttt gtagcggttt aaagacatca agccggtttc cgagcctgaa
     1261 aaaaatgcag agagtactaa aagaatagct aaggtaataa ataaactact caggggaata
     1321 ctgtccaaaa ttcaattcct atgtaaatta atcataaaag gtagcgtaac actaaaagcg
     1381 ttgtcactac ctcactttgt cggttcagcc gacttgcaaa aaattttgct tttttgaccg
     1441 cttgtagatc attaattgac gatcaaacga ctaccgaaat agccgatggt gagcaacatc
     1501 atacccgaaa tcgaataaat aagcacccgt tttccacgcc aatgtaattt ccactgtcca
     1561 agtaactgaa tgctataaac aagccaagct aaaaaggaga aaattgcttt atgaatatgc
     1621 tccggctcga aaaagttatg caaataaacc acaccggaaa ataaagtgag cgtcagcata
     1681 gcttgtgcag ctaaggttaa agtaaagaaa tggcgttcaa ccgtcattag cggtggtaga
     1741 atctggcaaa agaacattgt tttgctcttt agttttctat ccagccattt gagttgaaaa
     1801 gcataaatta atgctaaaaa gaagagagca taagaaaata atgcaatccc taaatggaaa
     1861 agcagtcccg cattttcttg cacattacgg ataaaactac cttttacaaa tccagccacc
     1921 cccacactac aaatggcgaa agagtacaca ataattaaag gaaaccaaac cgttttccat
     1981 tttaacaacg caagtgtgac acaagccgcc ataatgaaac tcatcaaaga gattacattt
     2041 gttaccgtaa aattctgccc ttcgattaaa aataattcat tatataacac agaaaaatgc
     2101 aaaatcgtgg caagtaaccc aaacccaaag actaacatca tattaggctt tttattaact
     2161 gttgcggcat tttctaaatt cactagagta ggggcaaccc aaagtagcgc tagagcgtaa
     2221 gcaacaatgg ataaaagagg aagtaacata ttgtctcgaa tctcgtcaaa taagaataac
     2281 tatcagaatt ttaatcaaaa gtaaccgttt tagctagttt ttgctgttgc tagatcaaaa
     2341 attatcctaa aaaatgtgct tttcgcctta aattgaaccc taccttttct cggtaagatt
     2401 atctcactga aaacaataat tttcctttga ctaatttgct ttctatctgt aatatgcaca
     2461 ccctatgcaa aaggtaaaac taccccttac gattgaccct tacaaagatg ctcagcgtcg
     2521 cgttgattat gaaggctaca tttcaggtaa acttctaaca cgcttgggtg aatcagtatg
     2581 taatgtgcaa agtgatgcac aagtcactct ctcgttatat gtcgatccac aacgcctaac
     2641 tgtgattaaa ggcacagcaa aagtagatgt ggaatttgat tgccaacgat gtggtgaccc
     2701 gtttacacaa acgctcgact gttcatttgt tttcagtccg gtgtctaaca tggatcaggc
     2761 ggacatcttg cccgaaattt atgaacctat cgaagtaaac gagttcggtg aagtaaattt
     2821 actagatatg attgaagatg aatttattct tgaattacct ctagtcccga tgcatagtga
     2881 agaacactgt gaagtgtccg taagtgaaca ggtatttggc gagttgccgg aagaactggt
     2941 acaaaaacca aacccgttcg cagtattagc taatttaaag aaaaactaga tctaggagaa
     3001 agcccgtggc tgttcaacaa aataagaaat ctcgttcacg tcgtgatatg cgtcgttcac
     3061 acgatgcatt aacaactgca gcagtttcag tagataaaac cagtggtgaa actcactttc
     3121 gccaccacgt aactgcagac ggttactacc gtggtcgtaa agtaatcaac aagtaattcc
     3181 tttcgaggtt tatcttggtt gatatcactc ttgcagtaga tgtgatgggc ggggactttg
     3241 gtccccgcgt tactattcct gcactggaaa aagccttaaa acaaaatcca agcctttctt
     3301 ttttattatt tggtgatgaa caccaaatag cccctttatt acaaaaacac acactactca
     3361 accaccccaa aatccaaatt catcataccg aacaagtgat tgaagctgat gttccgttca
     3421 ctactgcaat ccgccaaagc aaaaacagct ctatgcggtt agcgattgag gcagtaaaag
     3481 agggcaaagc acaaggttgt gttagtggcg gtaacactgg tgcgttaatg ggattggcaa
     3541 aattattgat tgaaccatta ccaaatattg aacgccctgc actcacttcg ctaattccta
     3601 ccctcaacgg caaatccagc gtaatgttag atttaggggc aaatattgaa gtaagcaatc
     3661 accagctaca acaatttgca gaaatgggaa acctgtttgc tcaagtaatg cttgatttag
     3721 tttaccctcg cctgtcttta ttgaatattg gtacagaaga aaataaaggc acggcacaac
     3781 ttcaggcagt gcatcaactg ctgaaaaaca gacaagactt aaattacacc ggctttattg
     3841 aaagcgataa attaaccagc tatctcactg atgtgattat ttgtgacggc tacaccggca
     3901 atatcgcgtt aaaagcgttg gaaggggcag ctaaaaatat tatttctctc tttaaaaaag
     3961 agaaagccga ttccaatatt tgccgtaaca ccaaacgata tttactgaaa gcgatgttct
     4021 accgttacta ccgcaaattg caacaaatta accctgaccg ccataacggt gcgaccttgc
     4081 tcggcttatc taaagtagtc gtgaaaagcc acggcggggc aaatatcaat gccttttatt
     4141 acgctattga ttatgcggtg caacaaattc aaggcgacat tccaaataaa atcctagagg
     4201 gtttaaccca aaaataagcg aactcaactg ttcgcttatt ttcatttctt gtttcactta
     4261 aagatacaag cggtcaaatt tgcaaaaaaa tttacccatt caaccgcttg tgtttagcct
     4321 tttaattttg ccactcgtaa actaaccgca ttgcggtgtg catctagcaa ttctgcactt
     4381 gccattcgtt ccaccgtttc ggccaaggct agaaagcctt gtggtgtcag ctcctgcacc
     4441 gtcattcgct tgctaaaatc agctaaacct aagctcgaat aggttttagt gtagccgtaa
     4501 gtcggtaaaa cgtggttagt gccgctagca taatccccca tactttccgg cgaatacgcc
     4561 cctaagaaaa tcgagccggc attatctaaa tccgccaaca acgagcgagc attttcagtt
     4621 tgcacaatta aatgctcggg tgcatattta ttactaattt cgaccgcttg ttgcaggttt
     4681 tccgcaataa aagtgcgact gtgagccaat gctttacggg cagtttcggc acgaggtaaa
     4741 accgccacct gcttttctaa ttcttcatcg actgcccttg ccaagctctc acttggtgtg
     4801 actaaaatca cttgggaatc ggctccatgt tctgcttgag agagtaaatc gctcgccaca
     4861 aatgcagggt cagcaaactc atcggcaatc accaacactt ccgacgggcc tgccggcata
     4921 tcaatcgccg tgccttcttg cacaacttgg cgtttcgcct ccgtcacaaa cgcattgccc
     4981 gggccgaaaa ttttatccac tttcgctacc gtttgtgtgc catttgccat cgcaataatc
     5041 gcttgagccc ccccaactgc gtaaatcgtt tccaccccac acaaatgggc ggtgtagaga
     5101 atttcatcgg caatcggcgg tggtgagcaa agcacaatct tgttacaacc ggcaattttt
     5161 gccggcactg caagcattaa cacggtagag aaaagcgggg ctgaaccgcc cggaatataa
     5221 agccccaccg cattaatcgg gcgagtgatg acttggcaac acacccccgg ctgggtttca
     5281 atatccacct cttgattttg ctgtgccttg tggaaagcct cgatattcgc tttcgcattt
     5341 tgaatcgctt gcttaagctc tggtgaaata cggctctgtg cttgctgaat ctgctgttct
     5401 gatacaacta agctctctaa ttttacttta tcgaactttt cagctaattc aaataatgcc
     5461 ttatcgccgt tggcaattac attcgcttta atttcattaa ctgccgcttt aatactctcg
     5521 ccaaccacct gtgccggacg ggcaagatat tgctgctgct cagtttctgt taaattgttc
     5581 caaattaggg tttgcatatt tattcctttt acgccaacat tttctcaatc ggtaaaacca
     5641 atacggaact tgcgcccatt tcttttagct gctccattgt ttcccagaac aggttttctt
     5701 ggctgacaac gtgcattgcc acacgggttt ggtcgttagc taacggtaaa atagtcgggt
     5761 tttccacacc gggtaataaa gcggtaattt ccgccagttt gtctttgggg gcgtgcagca
     5821 taatatactt agattcgttc gcctgttgca caccttgaat gcgggttaat aatttatcca
     5881 ctaacgcttg tttttccgct gaaagtggtt cttggcgttg aattaggcaa gcagttgaac
     5941 ggtaaatcac ttcaacctct tttaatccgt tcgcctctaa tgttgcacct gaagaaacca
     6001 agtcacaaat cgcattcgca attccggcac ttggagcaac ttcaaccgaa ccggtgagta
     6061 aaatactttt aaacggcaca ttttgctctt tcatataccg ctttaataaa ttggggtaag
     6121 aagtggcaat cacagcatct tctaaatctt tgatattgtt ataattttta tcacgatcaa
     6181 tagctaacga taaacggcag ccaccaaaat ctaactgacg aagtttttta taggcaacat
     6241 tctcaccagc acttaatcgc cctaattcca cttcctctaa tacattttca ccgataatcc
     6301 caagatcaac tacgccgtca aaaactaagc ctggaatgtc gtcatcacgc acccgtaaaa
     6361 tttcaatcgg catattttct gaataggcaa tcaggcgttg atcgttccaa atgattttca
     6421 cgccacattg tttaagcaac tcactacatt cttggcttaa gcgacctttt ttctgcatcg
     6481 caattcttaa tcgattttgt gttgtcattg ttgtttcctt cttatgtttt aaattgtaaa
     6541 aataaaaaaa cctctcgaaa tcacttccga gagggttaaa tttatgctgc gtttaggcgt
     6601 actcggaagt cttatcttcc gcacatacca aatgcccgaa agattattca ggtaaatgat
     6661 ggtggtgatg agtacgaata aaagccattt tgttgttctc caaactaaat tgctttaaaa
     6721 gatacgctta aattttggca atgacaagtg ttttttgcga aaaaattgct atttttcatc
     6781 tctctaaaac aactatcgca aacgtttgcg taaagcggta taatttgcct gattttttgc
     6841 aaattcaaca aagtaggaat aacactatgc aaatcagcct caaaaagatc tactccggca
     6901 aagtccgtga tctctacgaa atcgatgaaa aacgtatgct tatggttgcc accgaccgat
     6961 tatctgcctt tgatgttatt ttagacgatc ctattcctcg taaaggcgaa atcctcaccc
     7021 aaatctccaa cttctggttc aacaaattag cccacattat gccaaaccac ttcaccggcg
     7081 acagtgtgtt tgacgtgtta ccgcaagaag aggcagaagc tattcaacat cgtgcggtgg
     7141 tttgcaaacg cttaataccg gtgaaaattg aatcgattgt gcggggttat ttaaccggct
     7201 ccgggctgaa agattaccaa caaaccggca cgatctgcgg cttaacattg ccggaaggct
     7261 tggttgaggc cagcaaatta ccgcaaccga tcttcacacc gtccagcaaa gccgaggtgg
     7321 gcgatcacga tattaatatc agctacgaag agtgtgaacg ccagatcggt caagaacttg
     7381 ccgccaaagt gcgtgatgcc gctctaaaac tctacactga agcggcaaac tatgccctga
     7441 ccaaaggaat tattatttgc gacaccaaat tcgaattcgg cttagacgaa aacggtgaac
     7501 taacgctaat ggacgaagtc ctaaccccgg attccagccg tttttggtca gttgaaacct
     7561 accgagaagg cacaaatcca ccttcatttg ataaacaatt cgtgcgtgac tggctggaaa
     7621 atagcggttg gaacaaacaa cccccagccc cgaaaatacc ggcagaggta attgaaaaaa
     7681 ccgtagcgaa atatcaagaa gcattggatt tattaaccaa ataacaccac aagcggtcaa
     7741 atttacgcta ttttttgcaa aacaaaaacc tgtaagccaa cacttacagg ttttttagtt
     7801 agtggtaaaa agtgcggtta ttctaccgca cttttgcaaa attttgtgta aatctgaccg
     7861 cttgttagcc ttgcgaagaa atacgtttca tatctgtcat ataaccacgt aattcttgac
     7921 cgattaactc gattgggtgg ttacggattg cgtcattcac atcacgtaag gtaacgttgt
     7981 cgatttccac tgccggagtt ggttcaccta aatcgccttt ctctaacgtt gggataattt
     8041 tctccgctaa aatcggggtt gcaacgtgag agaataagta gttaccgtat tctgcggtat
     8101 ctgaaattac cacgttcatt tcatataaac gcttacgagc gattgtattt gcgattaacg
     8161 gtaactcgtg tagagactcg tagtaagccg attcttcata aataccggct gaaaccattg
     8221 tatcaaaggc taattcaacc cctgctttca ccattgcaac cattaacaca ccgttatcaa
     8281 agtattcttg ctcagaaatt ttaataccgt ctgcttgtgg tgcgttttca aaggctgttt
     8341 tacctgtttc ttcacgccat tttaataagt tggcatcgcc gtttgcccag tctgccatca
     8401 tcgttgatga gaactcacca ctgatgatgt cgtccatatg tttttcaaat aagaacgcta
     8461 attcttcttt gatttgctca gaaagctcga acgcacgcaa tttggcactg tttgataagc
     8521 gatccatcat taaggtgata ccgccttgtt ttaacgcttc ggtaatggtt tcccaaccgt
     8581 attggatcaa tttacctgcg taagccggat ctttaccttc cgacactaat ttgtcgtagc
     8641 acacgattga acctgcttgt aacataccgc aaagaatggt ttgttcaccc attaaatcag
     8701 atttcacttc tgctacgaat gaagattcta atacgcccgc acggtcacca ccggtagcac
     8761 ttgcccacgc tttcgcaatg gctaaacctt cgcctttagg gtcattttcc gggtgaacgg
     8821 caattaaggt tggcacaccg aaaccacgtt tgtactcttc acgcacttcc gtgcccgggc
     8881 atttcggagc ggtcatcaca accgttaaat ccggacgaat ttgctcacct tcttccacaa
     8941 tgttgaaacc gtgtgaataa ccaaatgccg caccttgttt cattaacggc attacatcgg
     9001 caactacttt agagtgctgt ttgtccggcg ttaagttaat gactaaatcc gcttcaggaa
     9061 ttaattgctc gtaagtaccc accacaaagc cgttttcaga agcacgttta aatgaagcac
     9121 gtttttcagc aatcgcttcg gcacgtaaag cgtaagcaat atctaagcct gaatcacgca
     9181 tatttaaacc ttggtttaaa ccttgagcac cacaacccac aatcacgatt tttttgcctt
     9241 ttaagaaatt gcagccatct gcaaattcat cacgatccat aaagcggcaa cgacctaact
     9301 ggtctaattt ttgacgtaaa tttaaagtgt tgaaatagtt agccattttt taatccttat
     9361 ttgaattaat gagattgata tgatgttttg tttgcacatt gttatagttt gatttgatta
     9421 taccttaacc taacattgcg taaattgaaa atattaatat ttcatattgc ataaaatgca
     9481 acttgcaaaa attttgccaa atttaaccac ttgcaatctc tacgataaag tagaaaataa
     9541 ccacctaatt taatagaaga tcaaaaaatg aaaataaaca gaatcatttt acaaagctgt
     9601 agcgaatgtg ggcaacaagt gcgagtcccg ctcacgtcaa atggcaatgc cgtttgcccg
     9661 gtctgccata atatattacg caaaagcaat acttggagct tgcaccgtag tgcttttttg
     9721 gcattagcca ttttaatttt gcttcccttc gcacttactt ttcccttgat gagcattgac
     9781 ttactcggca tcaaaattaa tgctaccgta tgggacggta tttggaagat ggcaacggag
     9841 ggctaccctt acaccgcttt tatggtgcta gtctgcgcgg taataatgcc gattgcattt
     9901 gtattgctaa ttttaaccat tcagctacaa cgtattattc gccaacgccc ccgttacacg
     9961 ctgattttct taactaaaat aaaagaatgg gtaatgcttg atgtctattt agttgctctt
    10021 gcggttgccg cttttaaaat tcgagattat gccgatctac aattcgatat caacttaatc
    10081 gcctttgtgt tggtaacact cttaaacacc ctacttttta ttaaaaccga gccaaaacaa
    10141 gcatgggaac gtttttaccc agaatatcac gccttgccgt ttgatcaccc aagcaatcca
    10201 acactttgcc cgacctgtga atattgcttt gatgaaacta ttttagactt aaaaggacgg
    10261 caacgctgcc ctcgttgtga aagcaattta tctatttccg acaacgtaaa aatacaacgg
    10321 gtttgggctt gcttaattgc agggactatt atgatgattc cggcaaatat tttcccgatt
    10381 tcgacaactg aactggcagg tcaggtttcg gcagattcat taatgtccgg cgtgcttctg
    10441 tttatggaaa tgggtagcta caccgtggca gcgattgtgt ttatcgctag tattgcggtg
    10501 ccggtgagca aaattaccat tattttttat ctcttgctgg caattcatta caagtggaaa
    10561 cacccgattc attggcaaat gaaactacta cactacgtcc attttgtcgg acgctggtca
    10621 atgctggatt tattcgtgtt atcattgatg atgtcgctac tcgaacgagg gcagattctc
    10681 agtttctcgg taggggaagc cgctttctat tttggagcag ccgtattctt aacgatgttt
    10741 gcctctgcaa atttagattc cagaatgttg tggaagattc atactgtcca gaaaacatcc
    10801 taaataaaga ttttccgata aataatacat aacatgcaaa gtaagaaaag tagtacgtaa
    10861 cccaaaatct caatccctat tgagtaagaa agagccgata atgtagcacc gatagccaga
    10921 aagaaattag caaatataaa atagtcttta ctatatttac ttgaggcaat tagggtatcc
    10981 attgcagtac taaagaacat ttccaaa
//
LOCUS       DANMBQ010000086        10949 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.086, whole genome shotgun sequence.
ACCESSION   DANMBQ010000086 DANMBQ010000000
VERSION     DANMBQ010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10949
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.086"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            119..502
                     /locus_tag="PXE92_001799"
     CDS             119..502
                     /locus_tag="PXE92_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5761021.1"
                     /translation="MVFTSYSIKSKKLCPTILALSVSSILSSQATYAEETTAELSEVN
                     VVAKEDVKASIEKKNKEIIQQELIQNNRDLVRYSPDVGIVNQGRHQKGFAIRGVEDNR
                     VGISIDGVSLFLIQKKIPFINAMVI"
     gene            469..2547
                     /locus_tag="PXE92_001800"
                     /pseudo
     CDS             469..2547
                     /locus_tag="PXE92_001800"
                     /inference="COORDINATES: protein motif:HMM:TIGR01786.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
     gene            2602..3108
                     /gene="hutX"
                     /locus_tag="PXE92_001801"
     CDS             2602..3108
                     /gene="hutX"
                     /locus_tag="PXE92_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization cystosolic carrier protein
                     HutX"
                     /protein_id="HDL5761022.1"
                     /translation="MISIEQQTALRNELAENPGQILEMLAAKYQCTLEEVMLNLPAEM
                     LKVTEGERFAEVLQQIHEWDDAITLISHTEDTIIEFVGKLPSGSISRGFYNFEHKEGG
                     GLQGHLRYENCAKIYLLDRPFMGKRTVSLIFINKKGNAMFKIFVGREKIGGALKEHQI
                     KALYQLIG"
     gene            complement(3188..4405)
                     /locus_tag="PXE92_001802"
     CDS             complement(3188..4405)
                     /locus_tag="PXE92_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter"
                     /protein_id="HDL5761023.1"
                     /translation="MKNKILGSALMIAGTTIGAGMLAMPLTSAGMGFGATALLLVGLW
                     ALLAYTGLLFMEVYQTAPQKDVGVASLAEQYFGLIGRVLATFSLLVLLYALLAAYITG
                     GGSLLAGVMPEMADADMKLKISILIFTAVLGTFVVVGVKSVDGLTRVLFLGKIVAFIA
                     VLLMMLPKAKLENLTAIPLDNLLIISAIPIFFTAFGFHVIMGTINSYLDADIGKIRKS
                     IYIGTAIPLVAYLLWQLATHGVLSQNEFTTILTQDPTLNGLVKATSQITGSTILGEMV
                     RLFSVLALITSFLGVSMGIFEGVGDLLKRLNLPTNRLWLTIATFTPPILFALFYPNGF
                     IKALGYAGLLFAFYGMILPIGLAWKARRQYPNLPYRVIGGNLALVVALIAGIIIMVIP
                     FLIQAGYLPQAVG"
     gene            4566..8099
                     /gene="mfd"
                     /locus_tag="PXE92_001803"
     CDS             4566..8099
                     /gene="mfd"
                     /locus_tag="PXE92_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HDL5761024.1"
                     /translation="MSLISLNLPKSDGNFQDHQTLGNLVGHSDTLAISQAARAFYGLT
                     VVVTPDTRTALRLEKALPQFAGLPVQLFPDWETLPYDNFSPHQDIISARLSALFELQQ
                     GRQQILLLPINTLMQKVCPPNYLANNVLLIKKGDRFSIQKLRLQLENAGYRAVEQVLE
                     YGEYAVRGSILDLFPMGAEEPFRLDFFDDEIDSIRTFDVDNQRTKTEIAEINLLPAHE
                     FPTDSNGIEHFRAKFREKFGEIRREPEHIYQQVSKGILNAGIEYWQPLFFEEMASLFD
                     YFPAQTLFITFADIQQKAEQFHQDTQNRYESHRVDPMRPLLPPSDLWFAIDEVNRWLK
                     GYPRLTITSEKIRKSAAKMNANVANLPDIAIQSSAKEPFSAFQQFRQKFDGNILFSVE
                     SEGRRETLLDLLAPLGVKPKQVNSLDEAQGLPFSLIISPLDQGFVVETGGHGTRPYDD
                     ELNTNGENDNNYVGAGPVPARNLAIICETDLLGERVQTRREKNRKAVNPDTLIRNLAE
                     LKIGQAVVHLENGVGRYGGLTVLDAGGIKAEYLVLHYANDAKLYVPVASLHLISRYIG
                     GADETAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQTGFAFAYDKAEFDQ
                     FSATFPYEETDDQKIAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHK
                     QVVILAPTTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKTILQNVAEGKVDILV
                     GTHKLLQDDVAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMA
                     LNGMRDLSIIASPPARRLLIKTFVRQSDEMVIREAILREILRGGQVYYLHNDVATIEN
                     CAEKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANT
                     IIIERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQRLEAMSTIDNLG
                     AGFALATHDLEIRGAGELLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPSLDEIT
                     QHQAEIELRVPALLPDDYLPDVNMRLSFYKRIASSENLQSLNDLKVELIDRFGLLPEA
                     TKNLFAITQLRLSAQTLGIKKIDAGIHGGYLEFKPTAQPDPMKFIALIQKQPAVYSFE
                     GAVKFKFRLALEDNRKRLEFVENLLREVVGG"
     gene            8262..8549
                     /locus_tag="PXE92_001804"
     CDS             8262..8549
                     /locus_tag="PXE92_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5761025.1"
                     /translation="MEEINGFEWDSEKALRNQQKHGVSFIEAVSVFYDNNAMLIPDPD
                     HSSREERFLLLGRSNKDNLLVVVHCERNTNIRIISARLATKRESGQYKGVH"
     gene            8550..8762
                     /locus_tag="PXE92_001805"
     CDS             8550..8762
                     /locus_tag="PXE92_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL5761026.1"
                     /translation="MRDEYDFSNAVKNPYAKGLKSKSVVTIRIEDDVISYFKQLAEEV
                     NLPYQTLINLYLKDCVEQKRKPTISW"
     gene            8878..9138
                     /locus_tag="PXE92_001806"
     CDS             8878..9138
                     /locus_tag="PXE92_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL5761027.1"
                     /translation="MEKIARLFRNGRNQAVRLPVEFEFDAEQVYVSKKENGDILLSLR
                     SRNTEHWQRLFELLPAVVCDETFLDTKERNQSFEQRDPFEVA"
     gene            9139..9528
                     /locus_tag="PXE92_001807"
     CDS             9139..9528
                     /locus_tag="PXE92_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL5761028.1"
                     /translation="MYMLDTNTVSYFFRGNANVVAKLKSINPERLCISSVTAAELVYG
                     VAKRNNGQLSQFLDYFLSSVKVLDWNYRCAELYGKLRAEMEKNGKVMGVQDQMIASHA
                     LAEECILVSSDQAFKMVPDLKLENWLH"
     gene            9548..10786
                     /gene="pepT"
                     /locus_tag="PXE92_001808"
     CDS             9548..10786
                     /gene="pepT"
                     /locus_tag="PXE92_001808"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HDL5761029.1"
                     /translation="MKQSLLNRLLRYTQIHTTSDPKSQTVPSSQQQWDLLHLLKTEVE
                     AMGLSEIYLDPNGYLFASLPANIDKTLPVLGLIAHVDTSPDFNGENVKPQVIEAYQGG
                     NILLNGSGDYLSPTDFPNLNKLIGDTLVTTDGTSLLGADDKSGIAIILSAIEYLQANP
                     HIPHGKIRIGFTTDEEIGRGADHFDVNAFGADVAFTFDGGPLGELQYENFNADAATVT
                     FFGRSVHPGTAKGKMINALERACEFQHRLPPHLTPATSEGREGFIMLHGIEGGIDKAE
                     IHYILRSFERDELAAFGKMLNDTLAEMQQIYGEHCGKVEIVEQYRNMREVLDDYGYLV
                     EIAENAMREQGIEPNLEPIRGGTDGSRLSFMGLPCPNLFTGGENFHGRFEFISVDTME
                     KATKVVIDICRKFADYDFNK"
BASE COUNT         3301 a         2174 c         2490 g         2984 t
ORIGIN      
        1 ctataaagag tgaaaacttt caatccatat gagaatcatt attgactata aatgtgatgt
       61 aactgataat acatcttatt aataataaag tatattaaaa atctatctag ggagaatcat
      121 ggtgtttacc tcttattcaa taaagtctaa aaaattgtgc ccgactatat tggctttaag
      181 cgttagtagc attttgtctt cacaagctac ctatgcggaa gaaacaacag cggaattatc
      241 tgaagtaaat gttgttgcta aagaagatgt gaaggcttct atagaaaaga aaaataaaga
      301 gataattcag caagagttga ttcaaaataa tcgagattta gttcgttata gccctgatgt
      361 tggcattgtt aaccaaggta gacatcaaaa aggatttgct attcgtggag tggaagacaa
      421 ccgtgtagga ataagtattg atggtgtctc gcttttcctg attcagaaga aaattccctt
      481 tataaacgct atggtaattt aaatacatct cgccaatcta tagatccgga attagctcgt
      541 actattgaag tatctaaagg tgcagattct ttcaatcaag gtagtggtaa tttaggcggc
      601 ggagttaatt atcggacgct tgagccttat gatattgttc gtaacggtaa taaatttggt
      661 gctttttatc gcacaggata tggtactcgt aataatgaat ggttgaatac attcggtgtt
      721 ggatatttag gtgagaaagc tgaggcgata ttggtttatt caaatcgcca tgggcatgaa
      781 atgaaaagtg caggaggtta tacacttcct gaagattctc tacaaactcg ctctttacgc
      841 agtagtaaac aaactcctga tgattctact cataatcatc ataattattt agccaaattt
      901 gcttatcgat ttaatgataa tcaccgcgtt ggtgtttctt acagtgggca aaataataaa
      961 aattatatta tcgaagattc agccgttact attacttctt tttggcgtga agcggaagac
     1021 cgtagtaaac gtgatacagt aaatgttttt tatgagtatt tcccagagtc aaaatggata
     1081 tctctagcga agatagatgc agattatcaa gatactgaaa catctgctta taactatgaa
     1141 ggtacacgcg ctgaagatgc aacagactgg agccctgcta aacaaagaaa accaagtgac
     1201 aataatattc gtatttttaa tactgaattg aaacgcttaa atttccgttt agacagccaa
     1261 gcattagaat ttggtaaatg gactcatcag ctatctttca aagcctctac tgcagagaga
     1321 gatttcgatg tattacataa ggactcggtt tatttatccg gtgtttgggt aaattctccc
     1381 gattctacga tgatgtaccc aattaaaacg aaacagcaca ctttttcatt gcacgataag
     1441 attgatttaa cgcatgattg gattgcaacg ctaggcattc gttatgattg ggcgaagtat
     1501 gaacaacaag aactcaatgg tcttgtttgt cgtaactgcg taaaaactga caatgcgaaa
     1561 tttaatcaac taacttgggt taccggttta gaaaaacatc tgactgaggc atggaaagta
     1621 ggatataaca ttgggacagg cttccgtatt ccaaatgcat cagaaatgta ttttgattac
     1681 cgtgataatg ctgcaggagc ttggatgtcc aatccaaacc taaaagcgga acgtagttta
     1741 agccaaaatt taagtttgca aggtagtggc aatgttgggc tgctctcagt taatttccac
     1801 catactaaat ataaagattt tttatgggag caagaaacct gggatgttta ccaagcatat
     1861 ggtagagagt tttggcgccc ggtacagcaa atgcaaaata ttgattctgc gaaaatctac
     1921 gggctagaag tgagtggtaa atggaattta aattcagcta tgccaatacc tgaaggctgg
     1981 aagctatttg gagccttcgg ttacagcaaa ggtagtatgt ctaacggggc agatttactt
     2041 tctattcagc cgattaaagc cgtagttggc ttagattatg aacaacctga aggtaaatgg
     2101 ggagtatttt ctcgcttcac attcttgggg gctaaaaagg cgaaagatgc aaaatattta
     2161 aaaacattac cggaaaaatg ccttaaagag gatagaacgc caaatccgta ttacccttat
     2221 tggggggatg aatatgacat tcgttgtact gaatattctc acgagacagg tttagatacc
     2281 tggaagcact taaatgctaa agcctttgtt gtggatttat acggtttcta taaaccaact
     2341 gagaatatta cattacgtgc cggtatttat aatttgttta accgtaaata ccatacttgg
     2401 gatactttac gtggtttaaa tacaacaggt ggaatcgtta attctgttgg agtacgtgaa
     2461 aatgcaactt acggtggcta tcctggatta caacgctatt atgaacctgg acgtaacttc
     2521 tcggctaatt ttgaataccg tttctaattt acaaatttac ttagagagct aagaaactct
     2581 ctttacttaa aggaacattt aatgatatca atcgaacaac aaaccgcctt acgcaatgaa
     2641 ttagccgaaa atccggggca aattttagaa atgttagcgg caaaatatca atgcacgctg
     2701 gaagaggtaa tgctgaattt accggctgaa atgctaaaag taaccgaagg ggaacgtttt
     2761 gccgaagtgc tacagcaaat ccacgaatgg gacgatgcga ttacgctgat ttcgcatacg
     2821 gaagatacca ttattgagtt tgtgggaaag ctcccaagcg gttcaatttc tcgtggattt
     2881 tacaatttcg aacataaaga gggcggaggc ttacaagggc atctacgcta cgaaaattgt
     2941 gccaaaattt atttgttgga tcgtcctttt atgggaaaac gtactgtttc actgattttc
     3001 attaataaaa aaggcaacgc aatgtttaag atttttgtcg gcagagagaa aattggcggg
     3061 gcattaaaag agcatcaaat taaggcgctg tatcagttga ttggctaatc tgtaaaaagt
     3121 catcgaaaaa tgaccgcttg taacttatag aaagggctac gatattgaat cgtagccctt
     3181 ttcaatatta gcctaccgct tgcggtaaat agccagcctg aattaaaaac ggaatgacca
     3241 taatgataat accggcaatt aacgcaacca ctaatgccaa attaccacca atcacacggt
     3301 aaggtaaatt cggatattgg cgacgtgctt tccacgctaa gccgataggt aaaatcatac
     3361 catagaacgc aaagagtaaa ccggcgtaac ctaatgcctt aataaagccg ttcggataga
     3421 ataaagcgaa cagaattggc ggtgtaaagg tggcgatggt cagccataaa cggttagtcg
     3481 gtagatttaa gcgttttaac aaatcgccca cgccttcaaa aattcccatc gaaaccccta
     3541 aaaatgaggt aatcaatgca agcactgaga ataagcgaac catttcgcct aaaatcgtac
     3601 taccggtaat ctggctagtg gctttcacca agccgtttaa ggtcggatct tgtgtcaaaa
     3661 ttgtggtgaa ttcattttgg cttaataccc cgtgtgtagc gagctgccac aataaataag
     3721 ccactagcgg aattgccgtc ccgatataaa tagatttacg aattttgccg atatctgcgt
     3781 ctaaatagct attaattgtt cccataataa cgtggaaacc gaacgcagtg aagaaaatgg
     3841 gtatagcaga aataatgagt aagttatcta atggaattgc tgtcaagttt tccagcttcg
     3901 ctttaggcag catcatcagc aacacggcaa taaaagcaac aatttttccc aaaaacagta
     3961 ctcgggttaa accatcaacc gatttcacgc cgactaccac aaatgtacct aataccgcag
     4021 tgaagattaa aatgctgatt ttcagtttca tatcagcatc tgccatttca ggcattacac
     4081 cggctaacag tgaaccacca ccggtaatat aagccgcaag tagggcataa agtagtacga
     4141 gcaaactgaa agtggctaat acacgcccga ttaagccaaa gtattgctcg gcaaggcttg
     4201 ccactccaac atctttttgc ggagcggttt gataaacttc cataaataat aaaccggtgt
     4261 aggccaataa agcccataat ccgactaaga gtaatgcggt tgccccaaaa cccattcctg
     4321 cagaggtgag tggcattgca agcattcctg caccaatggt agtgcctgca atcattaatg
     4381 cacttcctaa aattttattt ttcataatat gtgtgagtaa gagttaaaaa aggggaacat
     4441 tttatcagaa ttttttcgca atgcgatcta gataacataa tttctccgct tattttgcac
     4501 aatcagccgt gctttagtaa actaagcaac aatttgcaat tttttattta aaacagaccg
     4561 cttgtatgtc tttaatttca cttaatctgc cgaaatctga cggcaatttt caagatcatc
     4621 aaaccctcgg taaccttgtc gggcattccg atacccttgc gatcagccaa gctgcccgag
     4681 ccttttacgg cttgacggtg gttgtcacac ccgacacccg cacggcgtta cgcttggaaa
     4741 aagccttgcc tcagtttgca gggctgccag tgcaactgtt ccccgattgg gaaaccttgc
     4801 cttatgacaa tttttcgccg caccaagaca ttatctccgc ccgactttct gccctgtttg
     4861 aactgcaaca agggcgacag cagattttgc tgttgccgat caacacctta atgcagaagg
     4921 tctgcccgcc gaattatctc gctaacaatg tgctgttgat taaaaaaggc gaccgttttt
     4981 cgattcaaaa actgcggtta caactggaaa atgccggcta tcgggcggtg gaacaggtgt
     5041 tggaatatgg tgaatacgcc gtgcgtggct cgattttaga cctattcccg atgggagcag
     5101 aagagccgtt tcgcctcgat tttttcgatg atgagatcga cagtatccgc acttttgatg
     5161 tggataacca acgcaccaaa acggaaattg ccgaaattaa tttactgccg gcacacgagt
     5221 tcccgactga tagcaacggg atcgagcatt ttagagccaa attccgtgaa aaattcggtg
     5281 aaatccgccg tgagccggag catatttatc agcaagtcag caaaggcatt ttaaatgcag
     5341 ggattgagta ttggcagccg ttgttttttg aggaaatggc aagtctgttt gactatttcc
     5401 ctgcccaaac gctgtttatc actttcgccg atattcagca aaaagctgaa caatttcacc
     5461 aagataccca aaaccgctat gaaagccacc gagtggatcc gatgcgaccg ctactgccgc
     5521 cgagtgatct ctggtttgcg attgatgagg taaatcgctg gctgaaaggc tatccccgtt
     5581 taacgataac ttcggagaaa atccgtaaat cagcagcgaa aatgaatgca aatgtggcta
     5641 acttgccgga tattgctatt caatcctctg ccaaagagcc gttttctgct ttccagcaat
     5701 tccgccaaaa atttgacggc aacattctgt tttcggtgga gagcgaaggg cgaagagaaa
     5761 ccttgctgga tttgcttgct ccgcttgggg tgaagccgaa gcaggtcaat tcattagatg
     5821 aagcacaagg tttgccattt tccctgatta tttcaccgct tgatcaaggg tttgtggtgg
     5881 aaacgggcgg gcacgggacc cgtccctacg atgatgaatt aaatacaaat ggcgaaaatg
     5941 ataataacta cgtaggggcg ggtcctgtgc ccgcccgcaa ccttgccatc atctgcgaaa
     6001 ccgacctgct gggcgaacgt gtgcaaacac ggcgtgagaa aaaccgcaaa gccgtcaatc
     6061 ctgatacctt aatccgtaat ttagcagaac tcaaaatcgg acaggcggtg gtgcatttgg
     6121 aaaacggcgt ggggcgttac ggtggcttaa ccgtgctgga cgctggtggg atcaaagccg
     6181 aatatctcgt gctacattat gctaacgatg ccaaactcta tgtgccggtt gcctcgctcc
     6241 atttaatcag ccgttatatc ggtggggcgg atgaaactgc gccgctacat aaattaggca
     6301 gtgaagcgtg ggcgaaaacc cgccaaaaag cagcggaaaa aatccgtgat gtggcggcag
     6361 aattgcttga tgtttatgcc aaacgagaaa gccaaaccgg ttttgcgttt gcctacgata
     6421 aagcggaatt tgatcagttt agtgccactt tcccttatga ggaaacggac gatcagaaaa
     6481 ttgccatcaa tgccgtaatt agcgatatgt gccaagccaa agcgatggat agattggtgt
     6541 gtggcgatgt cggcttcggc aaaaccgaag tggccattcg agcgactttc ttggcagtga
     6601 tgaaccataa acaggtggtt attcttgccc caactacctt gctcgcccaa cagcattatg
     6661 agaatttcaa agaccgtttc gccaattacc ctgtgaatgt ggaagtgctg tctcgcttta
     6721 aaaccgccaa agagcagaaa acgattttgc aaaatgtggc ggagggcaaa gtggatattt
     6781 tggtcggcac gcacaaactg ttgcaagacg atgtagcgtt ccgtgatctt gggcttttag
     6841 tgattgatga agaacaccgt ttcggcgtac gccaaaaaga gaaaatcaaa caactgcgtg
     6901 ccaatgtgga tattctgacc ctcaccgcca cgccaattcc aagaacgctg aatatggcac
     6961 tcaacggaat gcgtgatctc tcgattatcg ccagcccgcc ggctcgccga cttttaatca
     7021 aaacctttgt gcgacaaagt gatgaaatgg taatccgtga ggcaattttg cgtgaaattc
     7081 tgcgtggtgg gcaggtttac tacctccata acgatgtggc aaccattgaa aattgtgccg
     7141 agaaattggc tgaactcgtg ccagaggcaa gaattgtgat cggacacggg cagatgcgtg
     7201 agcgtgaatt ggagcgggtg atgagcgatt tctatcatca acgctttaac ctgctggttt
     7261 gctccaccat tattgaaacg gggattgacg tgccgactgc caataccatt attatcgaac
     7321 gggcggacaa attcgggctg gcacaactgc accaactgcg tggacgggtc ggacgctcgc
     7381 accaccaagc ctacgcctat atgctcacac cgcacccgaa aacgctcacc aaagatgccg
     7441 agcaacgctt ggaggcgatg agtaccattg ataatctcgg ggccggtttt gcgttggcga
     7501 cccacgattt agaaattcgt ggtgcaggcg aattgctcgg ttcggagcag agcggacaga
     7561 ttgaaagcat cggtttttcg ctctatatgg acttgctcga aaatgcggtc aaagctttgc
     7621 aagaagggcg agaaccgagc ctcgatgaaa tcacccaaca ccaagcggag attgaattgc
     7681 gtgtaccggc cttattgccg gacgattatc tgcctgacgt gaatatgcgt ctgtcgttct
     7741 acaagcggat cgcaagctcg gaaaatctgc aaagcctgaa cgacttgaaa gtggagctga
     7801 tcgatcgctt cggcttgctc ccagaggcaa ccaaaaacct gtttgcgata acccaacttc
     7861 gcttgtcggc acaaacgctc gggattaaga aaatcgatgc cggcattcac ggcggttatc
     7921 ttgaatttaa accgacagcc cagcccgacc caatgaagtt tatcgcctta atccaaaaac
     7981 aaccagcggt gtacagtttt gaaggggcgg tgaagttcaa attccgctta gcactcgaag
     8041 acaaccgcaa gcggttagaa tttgtggaaa atttgctaag ggaggttgtg ggcggataaa
     8101 gcctcctaag gttgtcaatc ttgaaaaacg atttttgcga tctgtatcgt aaaaatcgtt
     8161 tttgtttatt gcgaatccag taatttcatc taggctgttt ataacttaaa aaaatagatg
     8221 taaatatatt ttatttacaa ttaaaaagga gtaaactggc aatggaagaa attaatggtt
     8281 ttgaatggga tagtgagaaa gctcttcgta atcaacaaaa acacggagtt agttttatcg
     8341 aggcggtaag cgtattttat gataataatg cgatgttaat cccggatcca gatcactcat
     8401 ctagggaaga gcgttttttg ctactcgggc gtagcaataa agataatcta cttgtggttg
     8461 tgcattgcga gagaaatacc aacattcgga ttatttcagc acgtttggca acaaaacgcg
     8521 aaagtgggca atataaagga gtacattaaa tgagagatga atacgatttt tctaatgcag
     8581 tgaaaaaccc ttacgcaaaa gggctaaaaa gcaaaagtgt ggttactatt cggattgaag
     8641 acgatgttat cagctatttt aaacaacttg ccgaagaggt gaatttgcct taccaaacgt
     8701 tgatcaatct ttatttgaaa gattgcgttg agcagaaacg taaaccgact attagttggt
     8761 aatattatga tttgaaatca gtatgttatt gagtatttga gaatgggtta tcttgccagt
     8821 tgtataaaat aggcatatac tttggcatat acactatcta tcggagggta aagtaagatg
     8881 gaaaaaattg cgagattatt ccgtaacggg cggaaccaag cagtgcgttt accggttgaa
     8941 tttgagtttg atgcagagca agtctatgtt tctaaaaaag aaaatggcga tattttatta
     9001 tcattgagat cgagaaatac cgagcattgg caacgattgt ttgagctatt gcctgctgtt
     9061 gtatgtgatg aaacattttt agatacaaaa gagagaaacc aatcctttga gcaacgggat
     9121 ccttttgagg tagcttaaat gtatatgtta gatacgaata ctgtaagcta tttttttcgt
     9181 ggaaatgcaa atgtggtggc gaaattgaag tccattaatc ctgagaggct ttgtatttca
     9241 tctgtaactg ctgctgaatt ggtttatggt gtggcgaaaa gaaataatgg gcagctttct
     9301 caatttttag attatttttt atcgagtgta aaggttttag attggaatta tcgttgtgct
     9361 gaactttatg gaaagttacg ggcagagatg gagaaaaatg gcaaagtaat gggcgtgcag
     9421 gatcaaatga ttgctagtca cgctcttgct gaagagtgta ttttagtttc tagtgatcag
     9481 gcatttaaaa tggtacctga tctgaaattg gagaattggt tacactaaac tatagtaagg
     9541 aaaaacaatg aaacaatccc ttcttaaccg tttactacgt tacacccaaa ttcacacaac
     9601 ttcagatccg aaaagccaaa ctgtgccaag ctcgcaacag cagtgggatt tgcttcatct
     9661 gctgaaaacg gaagtagagg cgatggggct aagcgagatt tatcttgacc ccaacggcta
     9721 tctgttcgcc agcttgcctg ccaatattga caaaaccctg ccggtgcttg ggctgattgc
     9781 ccacgttgat acttcgcccg attttaatgg tgaaaacgtg aaaccacagg tgattgaggc
     9841 ttatcaaggc ggcaatattt tgctaaacgg cagtggcgat tatctttcgc caacggattt
     9901 cccgaattta aacaagctga ttggcgacac cttagtcacc actgacggca cctctttgct
     9961 tggcgcagac gacaaatccg gcattgcgat tattctctcg gctatcgagt atttacaagc
    10021 caatccgcat attccgcacg gcaagatccg catcggcttt accaccgatg aagagatcgg
    10081 tcgaggcgca gatcattttg atgtaaacgc attcggtgcc gatgtcgcct ttacctttga
    10141 tggcgggcct ctgggcgaat tgcaatatga aaatttcaat gccgatgcag cgaccgttac
    10201 gttcttcggg cgtagcgttc accccggcac ggcaaagggc aagatgatca acgccttaga
    10261 gcgagcttgc gagttccaac accgtctgcc tccccattta acccctgcca ccagcgaagg
    10321 gcgtgaaggc tttattatgt tgcacggcat tgagggtgga attgataaag cggaaattca
    10381 ctatatttta cgtagctttg agcgtgatga attagctgca ttcggcaaaa tgctgaatga
    10441 tacgctggca gagatgcaac agatttacgg cgaacattgc ggaaaagtcg agattgtcga
    10501 gcaatatcgc aatatgcgtg aagtgctgga cgattacggc tacttggttg aaattgccga
    10561 aaacgcaatg cgtgaacaag gcattgagcc gaatttagaa ccgatccgtg gcggtactga
    10621 tggctcacgc ctttcattta tgggcttgcc ttgcccgaat ttatttaccg gcggcgaaaa
    10681 tttccacgga cgatttgagt ttatttcggt tgatacgatg gaaaaagcca caaaagttgt
    10741 aattgatatt tgtcggaaat ttgctgatta tgatttcaac aaataaggcg gctgcaagcg
    10801 gtcaaatttg atgaaaaatt tgcaaaaagc gttatttttc accaattaaa cgatttttta
    10861 cagatttcct acaaatttat ttgacattaa atctgaaatc catagaatat gcacctgttg
    10921 agactctacg aggttcgtag cgtttttaa
//
LOCUS       DANMBQ010000087        10777 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.087, whole genome shotgun sequence.
ACCESSION   DANMBQ010000087 DANMBQ010000000
VERSION     DANMBQ010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10777
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.087"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..268
                     /locus_tag="PXE92_001809"
     CDS             <1..268
                     /locus_tag="PXE92_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5761030.1"
                     /translation="KLARKAQRRLSFLRVFSLAFAAFIVNTTEFIPIALLSDIASSFQ
                     MEPSSAGIMMTVYAWVVFLLSLPLMLLTANMERKRLLLMLFMGE"
     gene            265..966
                     /locus_tag="PXE92_001810"
     CDS             265..966
                     /locus_tag="PXE92_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5761031.1"
                     /translation="MIGQALGWRATFGIIGIIALIVLMMIWRLLPYLPSKNAGSIKSL
                     PLLFKRPMLIGIYLLVALIVSGHFTAYSYIEPFMIKISSVSVENTTFILLVFGLAGVV
                     ASFLFGRLYGKAPNKFILSGIAIIMCSQLCLLFLSDSTVAMFMVAFVWGIGITGMSIA
                     LQMKVLELAPDATDVATAIFSGTYNLGIGGGALLGSIAIQQLGLANIGFAGGSIAFVA
                     MVWFVFVSLKYRQLR"
     gene            complement(1033..2766)
                     /locus_tag="PXE92_001811"
     CDS             complement(1033..2766)
                     /locus_tag="PXE92_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3413 domain-containing protein"
                     /protein_id="HDL5761032.1"
                     /translation="MFARLRSLLPTNSRQYREETSQKITWGHWFALFNIVLALLISSR
                     YAFNADWPNTLVGKLYFFVSLFGHFSFVVFAGFLLILFPLSFIVKNHRTYRGLSVILA
                     TIGQTVLLVDTEVFKQFYLHLSPLVWDLLVNPEEGELTRKWQLLFVPMPLLLLAEMLY
                     SRWCWQKLRSFSRQKWGKYVALFFVISFTATHLIYAWADMNAYRPITAQRANYPLSYP
                     MTARNFLEKHGFIDRVEFNQEIEESGRLDTFYLNYPKSPLIATKTPSTNILLINLSGL
                     SKQIINAETMPKLTEISQQSHRFMQHYSSGDSASAGALGLFYSLSGKYLDSVLADKTV
                     SPLIEIARKSDYQLGLFSHNGFADPIYHQAIFSGILLPTAHSNVGAIGQWKNWISSRS
                     LENPFFSYLDLRMPFAHTAQEQAKLLDWQFAEIWQHLTQNALLANTLVIITADISNEV
                     GAENSFDKQHIQVPMMFYWQGESKEYHFLSSHLDIMPTLLSQFFGVQNPLNDYAQGMD
                     LSTQNQRLWVSSSNHKWNVAIMPNGDQYQIDRKGNFKHFNSNGEHEKDARPPLALFLQ
                     MIQQSNQFIEK"
     gene            complement(2771..2992)
                     /locus_tag="PXE92_001812"
     CDS             complement(2771..2992)
                     /locus_tag="PXE92_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1414 domain-containing protein"
                     /protein_id="HDL5761033.1"
                     /translation="MATKSKYHTKQFEQLLADLIATIEKHKAPVDLSLMALGNMITNI
                     LIENIQSPAQREALADAFADALKQSLKTK"
     gene            3231..3803
                     /locus_tag="PXE92_001813"
     CDS             3231..3803
                     /locus_tag="PXE92_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDL5761034.1"
                     /translation="MSRRSEPKEEMVNRILSATESLIVQEGLQNLSMRSIAKEAGIAS
                     GTLYLYFKTKDDLLHSLAAQLLECYNGYMHFEFKPEMALFEQYKALVNKKWQFLIERL
                     DLVKQFQAVIGIDELIRETIADETSFWNKLILEGKKQRIIADLSNELLYGLSIGTLVD
                     IQYLQNLNQENQFDGYLDEIILRTWKAITF"
     gene            3834..5039
                     /locus_tag="PXE92_001814"
     CDS             3834..5039
                     /locus_tag="PXE92_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL5761035.1"
                     /translation="MTTETQKLGKGRKFLIVLTLLIVLIVFAAIVGLQKIGAMKKAEA
                     AANMPEAVSEVTAMQVTTQEWTPTISAVGYIRPNQGAMLSAETSGVVSRVLVTSGQRV
                     KKGDLLVEFDSSVEIANLRASEAQLPNAKANLERYRNLIASNSASKAEFDNAQSTYNQ
                     LLANIEALRATIKRRQIYAPFSGLAGIVNVNVGQYITMGTEIVRVEDQSSMKVRFTLP
                     QTNLEQISIGQKVTAVIDALPAQTFPAKIVAIDPAVDRLTGLINVEAVIEEGQEKLLS
                     GMFARLNVALPTETGQIVVPQISIAYTMYGETVYVLQPLSDEDKEMVNKMAVQNPSLD
                     VNKMYRAKQMEVKTADRKGNYSQLSKGVKAGDLIVTGGLQRLSNNALVKVSDTEAVGI
                     TTPAKNSKL"
     gene            5053..8220
                     /locus_tag="PXE92_001815"
     CDS             5053..8220
                     /locus_tag="PXE92_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HDL5761036.1"
                     /translation="MKFTDIFIKRPVLAVCISLLITILGLQAIEKLQVREYPEMTVSI
                     VTVSVNYSGADARLMQTLVTSQLEEAVAQADNIDYMTSSSSPSTTTVTAKMKLNTDPN
                     AALSDISAKVNAVRSNLPSGIDDPSIRVSTGSNDALMYIRFVSDELNTSQVTDYINRV
                     VKPQFFTVNGVSSVDVYGSVFGLRIWLDPDKMASNNLSGAAVLSALSANNLQTAAGNS
                     NGYYTVYRNKVLSTTPSVTELEEVTVSTTKDGKTIKLKDIATVELDKYQDAARATVGG
                     KDAVVLAVSVAATANSLTVAKDIYPMFEQVLKNLPSTIQGDIVYDKTIAIDSSIKEVI
                     KTIGEATVIVLVVIILFLGSLRAMIVPVITIPISLIGVLFFLQMFGFSINLLTLLALV
                     LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLGAVYSPMAL
                     MTGVTGTLFKEFALTLAGAVFISGIAALTLSPMMSSRILKEHKEGEESAFARVVHRSL
                     DKMTSCYTNMLSGIMAVRGFVLFFAVLIFASLPMLFGSLSSEVAPTEDRGFVVGISNG
                     PSNTNLDYTEAALAQFNQEVTKLPEVSSLMTVSGFNGANSALSIIALKDWNDRSRERA
                     AISNDVAAIGKKVVGMDVNAIAFPEISTGENDLPFSLVITTADSYEKLAIVASEFLKK
                     AQTSGQFFFANLDLKFDTVTMNMKFDREKMGAYGVTMQQVSGTLGAFLSGAIITRVDI
                     DSRAYPIVSQAVRNDRLNPEDLMNYYVTTATGQSIPLGSFVTMELKTSPSSLPRMSQL
                     NSATIGGVVSGSIGDAVNWAKAELDRTLPSGYQYDFRGESRQFVQEGNAMAMTFALAV
                     IIIYLVLAIQFESWRDPLVILVSVPLAVSGALLVMNIPTAMKGLFMGIAAGTGSKDMM
                     AFANGIWTAGYTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLLHGKSRYEAIFHAA
                     TIRLRPIMMTTAAMIAGLIPLLFAVGAGAIARFSMGMVIVAGLAIGTLFTLFILPVIY
                     TFLGQEHKPLREFDEEKYFPTTKEA"
     gene            8448..9911
                     /gene="guaB"
                     /locus_tag="PXE92_001816"
     CDS             8448..9911
                     /gene="guaB"
                     /locus_tag="PXE92_001816"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDL5761037.1"
                     /translation="MLRIKQEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTETKLAISLAQEGGIGFIHKNMSIERQADRVRKVKKFESGIVSEPVTISP
                     DMTLAELAELVKKNGFAGYPVIDENQNLVGIITGRDTRFVTDLSKTVREFMTPKDRLV
                     TVKENASREEIFHLMHEHRVEKVLVVNNEFQLKGMITLKDYQKAESKPNACKDEFGRL
                     RVGAAVGAGPGNEERIDALVKAGVDVLLIDSSHGHSEGVLQRVRETRAKYPDLPIVAG
                     NIATAEGAIALADAGASAVKVGIGPGSICTTRIVTGVGVPQITAIAEAAAALKERGIP
                     VIADGGIRYSGDISKAIAAGASCVMVGSMFAGTEEAPGEIELYQGRAFKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRIAYKGYLKEIIHQQMGGLRSCMGLTGCATI
                     EELRTKAEFVRISGAGIKESHVHDVTITKEAPNYRMG"
     gene            10032..10703
                     /locus_tag="PXE92_001817"
     CDS             10032..10703
                     /locus_tag="PXE92_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HDL5761038.1"
                     /translation="MLQAIIFDMDGVIVDTEYLEFSLQKQFIEDIKEHSRPITLEQQS
                     EVVGKCLKEIPVIIKKLSESSLPIEEIRARYYAFFQDLFSKVDFKTIFRADIQQIIQF
                     AKQNQIKLAVASSSALSHIENILTVCGIKDEFDLIVSGEQFEHSKPDPTIYRYTCEKL
                     GVEPQNAVAIEDSYYGMLAAKTAGLTVIGYEEKRILIDQSLADYMGKDMKEILKILQK
                     CNTPS"
BASE COUNT         3135 a         2008 c         2446 g         3188 t
ORIGIN      
        1 gaaacttgct cgaaaagctc aacggagatt atcgttcctt agagtattta gtcttgcctt
       61 tgcggctttt atagtaaaca ccaccgaatt tattcctatt gcattgcttt cagacattgc
      121 aagcagtttc caaatggagc cttcatcggc aggcattatg atgacggttt atgcgtgggt
      181 ggtattttta ttatcgttac cgttgatgtt actcacggcg aatatggaaa gaaaacggct
      241 gttgctgatg ttatttatgg gcgaatgatc gggcaagcct taggctggcg ggcaaccttt
      301 ggcattattg ggattatcgc tttgattgtg ctaatgatga tttggcggtt gctgccttat
      361 ttaccaagca aaaatgcagg ctcgataaaa agtttgcctt tgttatttaa acgcccgatg
      421 ttaatcggca tttatttgct ggtggcattg atcgtttcag gacattttac cgcttacagc
      481 tatattgagc cgtttatgat taaaatcagt tcggtgagtg tggaaaacac cacctttatt
      541 ttgctggttt ttggcttggc aggtgtggtg gcaagttttt tatttggtcg gttatatggc
      601 aaagccccga ataaatttat cttaagcggg atcgccatta ttatgtgcag ccagctttgt
      661 ttactgtttt tgagtgactc aacagtggca atgtttatgg tcgcttttgt ctggggaatt
      721 ggcattaccg gaatgagcat tgcgttgcaa atgaaggtgc ttgaacttgc ccctgatgcg
      781 actgatgtcg caactgcaat tttttccggc acttataatt taggcattgg cggtggagca
      841 ttactgggga gcatcgctat tcagcaactg ggattagcca atatcggatt tgccggtggg
      901 agtattgctt ttgtagcaat ggtttggttt gtatttgtta gcttgaaata tagacagctc
      961 agatagtgac aagcggtcat attttgctga aattttgcaa attttcctgc aaaaatgacc
     1021 gcttgttgaa cattactttt caataaattg attgctttgt tgaatcattt gtaagaacaa
     1081 cgctaatggt ggtcgagcat ctttctcgtg ttcgccattg ctgttaaagt gcttaaagtt
     1141 gcctttacga tcaatttgat attgatcgcc attcggcata atcgccacat tccatttgtg
     1201 attagaactg gatacccata aacgttggtt ctgggtgctt aaatccatac cttgtgcata
     1261 atcattcagc ggattttgca cgccgaagaa ttggctcagt aaggttggca taatatctaa
     1321 atggcttgaa aggaaatggt actctttgct ttcgccttgc cagtagaaca tcatcggcac
     1381 ttgaatgtgt tgtttatcga agctattttc tgctccaact tcattactaa tatcggcggt
     1441 aatgattacc agcgtattcg ccaatagtgc attttgggtc aaatgttgcc agatttcagc
     1501 gaattgccaa tctaataatt ttgcctgctc ttgagcggtg tgggcgaagg gcattcttaa
     1561 gtctaaatag ctaaagaacg gattttccaa tgagcgagag ctgatccagt ttttccattg
     1621 cccaatcgcc cctacattac tgtgcgccgt aggcaataaa ataccagaga agatcgcctg
     1681 atgataaatc gggtcggcaa aaccattatg tgaaaacagc cctaattgat agtccgattt
     1741 tctagcgatt tcgataagcg gtgacacggt tttatcggct aaaacggaat ccaaatattt
     1801 accgcttaaa ctgtaaaata gacctaatgc accggcagag gctgaatcac cactactgta
     1861 atgctgcata aagcggtggc tttgttggct gatttctgtc agcttaggca ttgtttcggc
     1921 atttattatc tgtttagata aacctgataa attaatcagt aaaatattag ttgagggcgt
     1981 tttggtcgca atcaagggag attttggata attcagatag aaagtatcta gtctgccact
     2041 ttcttcaatt tcttgattaa attctactcg gtcaataaaa ccgtgttttt ctaagaaatt
     2101 acgagccgtc atcgggtaag aaagtgggta gtttgctcgt tgagcggtaa tcgggcggta
     2161 ggcattcata tctgcccacg catagattaa atgagtagcg gtaaagctga tcacgaaaaa
     2221 gagagcgaca tatttgcccc atttttggcg gctaaaacta cgcagtttct gccagcacca
     2281 gcgagagtag agcatttctg ccagcaaaag gagtggcatt ggtacaaaca gcagttgcca
     2341 tttacgggtc agttcccctt cttccggatt aactaacaga tcccatacaa gcggtgataa
     2401 atgcagataa aattgcttga agacttcagt atccaccaat aacacggttt gcccgatggt
     2461 ggctaaaatc acggaaagcc cacgataggt gcgatgattc ttaacaataa aactgagcgg
     2521 aaacagaatt aatagaaatc ctgcaaagac cacaaagctg aaatgcccga acaggctgac
     2581 aaagaaataa agtttgccta caagcgtgtt cggccagtct gcattaaatg cgtaacgaga
     2641 ggaaatgagt agtgccaaca caatattaaa tagtgcaaac caatgccccc acgtgatttt
     2701 ctgtgaggtt tcttctcgat attggcgaga attggtcggc aataaactgc gtaggcgtgc
     2761 aaacatcatc ttatttggtt tttagtgatt gttttaatgc atcggcaaag gcatcagcga
     2821 gagcttctct ttgtgccggg ctttgaatat tttcaattaa aatgttagtt atcatattgc
     2881 ctaatgccat taacgataaa tccaccggtg ctttatgctt ttctatggtg gcgatgaggt
     2941 cagccaatag ctgctcaaat tgtttggtgt ggtatttaga tttcgttgcc atattgaaat
     3001 aaagatgatc ctataattag gtacaaatag tagcacaaaa ataataataa agtagcgtta
     3061 agcgttattg tttgagtgat ttttgcaaag ttttagccaa aaatgaccgc ttgttcaata
     3121 aatgaggaat tttgcaacta ttttatttta atttgatagg tgttttctgc tttctttttt
     3181 cataaaaaaa gctataatga acggctgttc attataggta aggagataaa atgtctaggc
     3241 gaagcgagcc aaaagaagag atggtaaacc gtattttatc ggcaaccgag tcgctgattg
     3301 tgcaagaagg tttgcaaaac ctttcaatgc gtagtattgc aaaagaagca gggatcgctt
     3361 ccggtacatt atatctttac tttaaaacca aagatgattt attgcactca ttggctgccc
     3421 aattactcga atgttataac ggttatatgc attttgagtt taagcctgaa atggcgttat
     3481 ttgagcaata taaagcgttg gtcaataaaa aatggcagtt tttaatcgag cgtttagatt
     3541 tggtaaaaca gtttcaagcg gtgataggga ttgatgaatt gattcgggaa accatagctg
     3601 atgaaacttc cttttggaat aaattaattt tagaagggaa aaagcaaagg attattgctg
     3661 atctatctaa tgagttgctt tatggattaa gcatcggcac attggtggat atccaatatc
     3721 tgcaaaatct gaatcaagaa aatcagtttg atggatattt agacgagatt attttacgca
     3781 cttggaaagc aatcactttt taagtttctt tttattagtt ttatggagaa tgtatgacaa
     3841 cggaaacaca gaagctgggt aaaggcagaa agtttttaat tgtactcaca ttgttaatcg
     3901 tattgattgt gtttgctgca atcgtagggt tacaaaaaat cggggcaatg aaaaaagccg
     3961 aagcagcggc aaatatgccg gaggcggtga gcgaagttac tgctatgcaa gtgacgaccc
     4021 aagaatggac accaaccatt tctgcggtcg gttatattcg cccaaatcaa ggggcaatgt
     4081 taagtgctga aacttcaggc gtggttagcc gtgttttggt cacttcagga cagcgtgtga
     4141 aaaaaggtga tctgttagta gaatttgaca gcagtgttga aattgctaac ttgagagcct
     4201 ctgaagcgca attaccgaat gccaaagcaa atttagagcg ttaccgtaat ctgattgcct
     4261 caaacagtgc ttctaaagcc gagtttgata atgctcaatc tacctacaac caattattag
     4321 ccaatatcga ggcattgcgt gctacgatta aacgccgtca aatttatgct ccgtttagtg
     4381 gtttagcggg tatcgtgaat gtgaatgttg ggcaatacat tacaatgggt acggaaattg
     4441 tgcgtgtgga agatcaatct tcaatgaaag tacgttttac cttgccgcaa actaatttag
     4501 agcaaatctc gattgggcaa aaagtgacag ccgtaattga tgcgttaccg gcacaaacct
     4561 tcccagctaa aattgtggct attgatccgg ctgtggatcg tttaaccggc ttaattaatg
     4621 tggaagcggt gattgaagaa gggcaggaaa aattgctttc aggtatgttt gcccgcttaa
     4681 atgttgcttt accaacagaa accggacaaa tcgtcgtacc acaaatttct atcgcttaca
     4741 ctatgtatgg tgaaacggta tatgtgctgc aaccattatc tgatgaagat aaagaaatgg
     4801 tgaacaaaat ggcggtacaa aacccaagtt tagatgtaaa caaaatgtac cgtgcaaaac
     4861 agatggaagt gaaaacggct gaccgcaaag gaaactattc acaattatcc aaaggcgtga
     4921 aagcaggtga tctgattgta acaggcggtt tacaacgttt aagtaataat gcgttggtta
     4981 aagtttctga tacagaagcc gtaggcatta ccacaccggc gaaaaacagt aaactgtagt
     5041 ggagtgagtt aagtgaaatt tactgacatc tttattaaac gtcctgtttt ggcagtttgt
     5101 atcagcctat tgattacgat cctaggcttg caagcaatcg aaaaattgca ggtgcgtgaa
     5161 tatccggaga tgacggtctc gattgtaacc gtgagtgtta actattcagg tgcagatgca
     5221 cgtttaatgc agacactggt tacctcacag ttagaagagg ctgttgctca agcggataat
     5281 attgactata tgacttcatc aagctctcca agtaccacta cggtaacggc aaaaatgaag
     5341 ttaaataccg atccgaatgc cgcactttcc gatatttcgg caaaagtgaa tgcggtacgc
     5401 tcaaatttac cgagcggtat tgatgatccg tcaattagag tctcaaccgg ttcaaatgat
     5461 gcgttaatgt atatccgatt tgtctctgat gaacttaata catcacaagt taccgattat
     5521 attaaccgtg tagtaaaacc acagttcttt acggtaaatg gtgtttctag cgttgatgtg
     5581 tatggctctg tttttggctt acgcatctgg cttgatccgg ataaaatggc gagcaataac
     5641 ctatcagggg cggctgtatt atcggcatta agtgccaata acttgcaaac cgctgcgggt
     5701 aattctaacg gttactatac ggtttataga aacaaagtac tttctaccac gccttctgtg
     5761 acagagttag aagaggttac ggtttcaacc accaaagatg gaaaaaccat caaattaaaa
     5821 gatattgcga ctgttgagct ggataaatac caagatgcag caagagcaac ggttggcggt
     5881 aaagatgcag ttgtgcttgc tgtttcggta gccgcaacgg caaactcttt aaccgtagcg
     5941 aaagatattt atccgatgtt tgagcaggta ttaaaaaatc taccaagcac cattcaagga
     6001 gatattgttt acgataaaac cattgcgatt gatagttcta tcaaagaagt aattaaaact
     6061 attggtgagg caaccgtcat tgtattggta gtaattatcc tgttcttagg ttcattacga
     6121 gcaatgattg taccggtgat taccattccg atttccttaa tcggggtatt attcttcctg
     6181 caaatgtttg gtttctcgat caacttgctt actttgctgg cgttggtatt agcgatcggc
     6241 ttggtagtgg acgatgcgat tgtcgtactt gaaaacgtag aacgtcacgt taaagaaggt
     6301 aaaacgccat ttgatgcagc gattatcggt acacgtgaaa ttgctttacc ggttatttca
     6361 atgactatta ctctgggtgc agtatattca ccaatggcat taatgaccgg ggtaacaggg
     6421 acactattta aagagttcgc tttaacgctt gccggtgcgg tatttatttc ggggattgcg
     6481 gcattaaccc tttcgccgat gatgtctagc cgaatattaa aagaacataa agaaggggaa
     6541 gagtcagcat ttgcccgcgt ggtgcataga tcactagata aaatgaccag ctgctatacc
     6601 aatatgctaa gcggtattat ggctgttcgt ggtttcgtct tattctttgc ggtgctgatc
     6661 ttcgccagtt taccgatgtt atttggctca ctttccagtg aagttgcacc gacagaagac
     6721 cgtggctttg tggttggtat ttctaatgga ccttcaaaca ccaatttaga ttataccgaa
     6781 gcagcgttag cccaatttaa tcaggaagta actaaattac ctgaagtatc ttccttaatg
     6841 acagtttcag gctttaatgg tgcaaatagt gcattatcga ttattgcatt aaaagattgg
     6901 aatgatcgta gccgtgaacg tgctgcgatt tctaatgatg tggctgcaat cggtaaaaaa
     6961 gtggtgggta tggacgtgaa tgcaattgca ttccctgaaa tttcaaccgg tgaaaatgat
     7021 ctaccattct cattagtgat tactaccgct gatagctatg aaaaattggc aatcgttgcc
     7081 tctgaattct tgaaaaaagc ccaaacttcc ggtcagttct tctttgcgaa tttagatttg
     7141 aaatttgata cggtcacgat gaatatgaaa ttcgaccgtg aaaaaatggg tgcttatggc
     7201 gtgacaatgc agcaggtgag tggcacatta ggggcattct tatccggtgc gattattact
     7261 cgtgtcgata ttgactctcg tgcttacccg attgtgtcgc aagcggtgcg taatgatcgt
     7321 ttaaatcctg aagatttaat gaattactat gtcacgactg caacagggca atctatcccg
     7381 ttaggttcat ttgtgacgat ggaattaaaa acatcaccat cttctttacc tcgtatgagc
     7441 caattaaact cggccaccat tggtggggta gtatctggct caatcggcga tgcggtaaat
     7501 tgggcgaaag cagaattaga tcgcacttta ccatcaggtt atcaatatga cttccgtggt
     7561 gaatctcgcc agttcgttca agaaggtaat gcgatggcaa tgactttcgc tctagcagtt
     7621 atcattatct atcttgtact tgcaattcaa tttgaatctt ggcgtgaccc attagtaatt
     7681 ttggtttctg tgccgttagc tgtgagtggt gcattgttgg taatgaacat tccaaccgca
     7741 atgaaaggct tgtttatggg gattgcagca ggcactggct cgaaagatat gatggcattc
     7801 gccaacggta tttggacggc aggttatacc ttaaatatct attcacaagt aggtctaatt
     7861 acccttgtcg gcttaattac taaacacggt atcttgatgt gtgaagtggc gaaagaagag
     7921 cagttactgc acggcaaatc acgctatgaa gctattttcc acgcagccac gattcgttta
     7981 cgcccaatta tgatgacaac ggcagcaatg attgcaggct taattccgct tctgtttgcg
     8041 gtgggtgccg gtgcaatcgc ccgcttcagt atgggtatgg taatcgtagc aggcttggca
     8101 atcgggacat tgtttactct gtttatcttg ccggttatct acactttctt agggcaagaa
     8161 cacaagccat tacgtgaatt tgacgaggaa aaatatttcc caacgacaaa agaagcatag
     8221 ttttaaatag caaaagagcg tagcgatacg ctcttttttg ttggcttaca agcggtcgtt
     8281 ttttatttat tgtttgctaa aaaatcacaa aatttaaccg cttgaaagta tattttcaga
     8341 tagcgtaaac gtttccctat ttacagaaac ctagttcctc tgtataatcc gctcgcaatt
     8401 ttccagtaca gattttcaat ttaatcattt tttaaggaat aattgcaatg ctacgaatta
     8461 aacaagaagc cctcactttt gatgatgttc ttctcgtccc ggcacattct actgtgcttc
     8521 ctaatactgc tgatctttct actcaattaa ctaaaaccat tcgtttaaac attccgatgc
     8581 tttctgctgc aatggatacc gttacagaaa ctaagcttgc gatctccctt gctcaagaag
     8641 gcggcattgg ttttatccat aaaaatatgt cgattgaacg ccaggcagac cgtgtgcgta
     8701 aagtgaaaaa atttgaaagt ggtattgttt ctgagccagt gacgatttct cctgatatga
     8761 cattagcgga attggctgaa ttggtgaaaa agaacggttt tgcaggctat ccggtgattg
     8821 atgaaaacca aaatttagtg ggaattatta ccggacgtga tacccgattt gtcacggatt
     8881 taagcaaaac agtgcgtgaa tttatgacac caaaagaccg tttagtgacg gtaaaagaaa
     8941 acgcaagccg tgaagaaatt ttccacttaa tgcacgaaca ccgagtggag aaagtgctgg
     9001 tagtgaataa tgaatttcag ttaaaaggaa tgattaccct aaaagactac caaaaagcgg
     9061 aaagcaaacc gaatgcctgt aaagatgagt ttgggcgttt gcgtgtgggg gcggcagtgg
     9121 gagccggtcc gggcaatgaa gaacgaattg atgctttagt aaaagcgggt gtcgatgtgc
     9181 tattaatcga ctcttcgcac gggcattctg aaggtgtatt acaacgtgtg cgtgaaaccc
     9241 gtgcaaaata ccctgattta ccgattgttg ccggtaatat tgccactgca gaaggagcga
     9301 ttgcgttagc tgatgcagga gccagtgctg tgaaagtagg aatcggcccg ggttcaattt
     9361 gtaccaccag aattgtaaca ggcgttggcg tgccacaaat cacggcaatc gcagaagcgg
     9421 cagctgcgct taaagaacga ggcattcctg tgattgctga tggtggaatt cgttattcag
     9481 gcgatatttc aaaagctatt gccgccggtg caagttgcgt aatggtcggt tcgatgtttg
     9541 ccggcacaga agaagccccg ggtgaaattg agctttatca aggcagagca ttcaaatcct
     9601 accgtggaat gggatcatta ggtgcaatga gtaaaggctc gtcagatcgc tatttccaat
     9661 ctgataatgc cgccgacaag ctcgtaccgg aagggattga agggcgtatc gcttacaaag
     9721 gctacttgaa agaaattatc caccaacaaa tgggcggctt acgctcctgt atgggattaa
     9781 ccggctgtgc cactattgaa gaactccgca ccaaagcaga atttgtccgc attagtggtg
     9841 ctggtattaa agaaagccac gtccacgatg tgacaattac caaagaagca ccgaactacc
     9901 gaatgggtta atagcctttc tcactctctc cccttgtggg agagagaccg ttttaaatta
     9961 cgttcagtaa tttaaaacag agagagggaa taagtggtta gattttctta aaattttaca
    10021 aaagaggcta tatgctccaa gctatcattt ttgatatgga cggcgtgatt gtggataccg
    10081 aatatctgga attttcctta caaaaacagt ttattgaaga catcaaagaa cacagccgcc
    10141 cgattacttt agaacaacaa tcggaagtgg taggcaaatg tttaaaagaa attccggtga
    10201 ttatcaaaaa actaagcgaa tccagtttgc cgattgagga aattcgtgca cgttactacg
    10261 cctttttcca agatctgttt agcaaagtgg attttaaaac cattttcaga gccgatattc
    10321 agcaaattat tcaatttgcc aagcagaatc aaattaagct tgcggttgcc tcttcttccg
    10381 ccctttcgca tattgaaaat attctcacgg tttgcggcat taaagacgaa tttgatttaa
    10441 tcgtcagcgg tgaacagttt gaacacagca agccagaccc aaccatttac cgctacacct
    10501 gcgaaaaatt aggcgttgag ccacaaaatg cagtggcgat tgaagactcc tactacggaa
    10561 tgctcgccgc caaaaccgca ggcttaacgg tgattggtta cgaagaaaaa cgaatactga
    10621 ttgaccaaag tttagcggat tatatgggca aagatatgaa agagattttg aagattcttc
    10681 aaaaatgtaa tactccaagt taataaacgg tcgattttta tagaaatttt gtcaatgttt
    10741 ctacttcaag tacttggaac agtctatcgg cttgagt
//
LOCUS       DANMBQ010000088        10605 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.088, whole genome shotgun sequence.
ACCESSION   DANMBQ010000088 DANMBQ010000000
VERSION     DANMBQ010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10605
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.088"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..576
                     /locus_tag="PXE92_001818"
     CDS             <1..576
                     /locus_tag="PXE92_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HDL5761039.1"
                     /translation="GAYLEASEAQIFRGKYQEMEFVPNPDFDGPYYGLDFGFAQDPTA
                     AVKCWVFNGDLYIEFEAGKVGLELDDTADFIAKGVPQIADHVVRADSARPESISYLKR
                     HGLPRIIGVEKWKGSVEDGIEHIKSYGKVFIHPRCQQTLNEFRLYSYKTDRLSGDVLP
                     VVIDAHNHFIDALRYALTPLMQVKSAKGVLL"
     gene            573..1949
                     /locus_tag="PXE92_001819"
     CDS             573..1949
                     /locus_tag="PXE92_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1073 domain-containing protein"
                     /protein_id="HDL5761040.1"
                     /translation="MSLEQDRLAFLAEALGLGNIKRRTLWKEFGYPNTLTFNHFLKAY
                     KRNSIAFAAINRLLDGCWVDCPVIVEGEQKNESKQTTEWESKVERFMKRYWSAIKEAD
                     RRNLVGNYSALLLQVRDGQQWDQPILQGALSSIGEFGLVKLIPVWQSQLSVTEFQEDV
                     TADNYGEPLMYQFSESAFGKKSVSRNIKVHASRVILLNEGGDFNSPHSGVPLLEAGYN
                     KLVDLEKTSGGSAEGFLKNASRQLGIKLTKDVDLRQLEDSAKALGFSSFSDALNDKIK
                     KINSGTDSALITHEGDASVLSVAPADPKPTWEISANEFAASVQIPFTILFGQQTGRLA
                     SDEDKTDWANRCNGRRNGFLTDVITQLLNRLWFIGVLPMPKNSDVTVSWSDLLAPSEK
                     EKIANAQALASVATTSQSAFGFAAVTANEIRESLGFEPLPDNLIPPTIDDENEDQDEN
                     QATADSDK"
     gene            1903..2841
                     /locus_tag="PXE92_001820"
     CDS             1903..2841
                     /locus_tag="PXE92_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL5761041.1"
                     /translation="MKIKTKIKPLRIPTNKADPLNMGVSVAKLFRHIDVIYSQIKRSI
                     KQQILQKMSLRLQANNFEYFPSYLTATELADLLETLQKIIDKEILSNGSQGENLWFDS
                     YIDEAALKGTQSAVTDLGLQSEAYRSQRNLSSIVFSPAYFNRLAIAHMASYSEWQGLS
                     DELRKSLAGVITEAVLNGKNVKETAREIRQKLDVSSKRAKRIAQSSQLAAYRRAEWQE
                     AEEAKEELGLNTKLLHFSALKATTRLAHAQRHGKYFDVAEVREWYSRDGNQFNCYCKQ
                     SVVVVNADGKTDIEPLLVGLAKERKQWVGALKNVKK"
     gene            2828..4198
                     /locus_tag="PXE92_001821"
     CDS             2828..4198
                     /locus_tag="PXE92_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2213 domain-containing protein"
                     /protein_id="HDL5761042.1"
                     /translation="MSKNNVNIVTVINSKNISTESIDGDQHLIIRGVVPIVDDVVMND
                     GLYPADEINKSYNSLEGNFMPLGHPKIEGKYVSAQDVRAVNKHHVGAWAKNVRKESGK
                     VLVDMYINRRFAEGSEQGKTLLERLDGMVTNTNAEPIHVSTGLILNKVKQSGKSKGKK
                     YSWIATNMSFDHIAILLDVPGAATPDDGVGIFVNQDGSEMGVENVNLTQAADYRTEKL
                     FDKVRFYLMANSDLSFEEIHRALREAIRPEGKDKWSFWVEAVYPKYFIYSDDNSGKKY
                     KRSYFIDENDNVQLTSEPVEVVKKIGYEEITTNEEHNPMKTKILAVLNAANVKTEGLN
                     DDQLLEAYNKLQADKGKEPEKPKNEDDSEIDEKIKKAVNAAIEPLQQALQANTDKEQA
                     AMRAAVKAKFNMSDAAVNALQGEVLTELYAQTQQSVGLNNNSANGNGDNQWDGYSLNQ
                     EEKGNE"
     gene            4191..4625
                     /locus_tag="PXE92_001822"
     CDS             4191..4625
                     /locus_tag="PXE92_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761043.1"
                     /translation="MSNVIYRGSVKREPQTVNIVINDTSAPGAVVKLHNGKLEAAADL
                     KGRRFLLGNNRFKGQTIEQAYAKGDTATAFRLEPEQEYYAQIADGTYNFGDELTVKQA
                     GGKLTKAETGDVVLFFFDEESQRVISGGKGYADVVVANAYTK"
     gene            4640..5629
                     /locus_tag="PXE92_001823"
     CDS             4640..5629
                     /locus_tag="PXE92_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="encapsulin"
                     /protein_id="HDL5761044.1"
                     /translation="MLKFTKEQERFVINERINYDKKHALMAANSAGLLGNAMTLPKDV
                     WAEWDRDAVQIQREELVVFNDLAGISKSMPIGKLIHHFQTVSDSGSVNISLDGRSSAK
                     TDNVVLNYHGTPLPIIDSTFSFGWRDMSAAQSEGYQIDGAARANSLRKVAEKMEDLAL
                     NGDSSIVVGNAKLYGLRTAPNRMTNTHNLDLATATPKEIYDVFRDLISKFHAKNYYSP
                     VTLYVNYGDYFAMSTRDYSEQKSEGSILNKVMTIPQIAKIVPASRVPQNEILGLCKRS
                     DVYQVLNGMPLVTRPIARHNETDDYSFQIMAAVAVEFKFDDKGNAGYIQYTKS"
     gene            5641..5874
                     /locus_tag="PXE92_001824"
     CDS             5641..5874
                     /locus_tag="PXE92_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761045.1"
                     /translation="MKWLLTHDSHELKKGDVYEGETLPLWLVGKAIEIEEKSFEVATP
                     SDHADGETGETGETGETGETGETGQKGKKDKGK"
     gene            5877..6254
                     /locus_tag="PXE92_001825"
     CDS             5877..6254
                     /locus_tag="PXE92_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761046.1"
                     /translation="MAAEIELSEARTTLDELGFTSPNSLLELYVQQTNTLDQALNKSG
                     YSEETQKLIKLYLVAILAISSGARRIKSEGAPSGASRTFEYDPNALDNLKSAIRSIDP
                     KGCAESLLPKDKVVGFFDVVGGC"
     gene            6254..6598
                     /locus_tag="PXE92_001826"
     CDS             6254..6598
                     /locus_tag="PXE92_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761047.1"
                     /translation="MSNLSNWSYTAKATLWQAKGKNDDGVLVFSTPQIISCDYGADRK
                     RARFEIGREQAVKNVIWTEFAHAKLGDYVLIGESEQADPILAGAEEIIHIQRFADTFD
                     RNRDDFALITGG"
     gene            6600..6968
                     /locus_tag="PXE92_001827"
     CDS             6600..6968
                     /locus_tag="PXE92_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDL5761048.1"
                     /translation="MGIKVKGIRQVKQRLNQVVGEVQSQKATRAMFRILNAVAPLAAH
                     YTPVDTSTLINSQFTEMEVNGTRLIGRVGYSANYAAYVHDPNIKQNFRKPSAKKEFLT
                     SALNESKATIKSIVKEELSL"
     gene            6965..7345
                     /locus_tag="PXE92_001828"
     CDS             6965..7345
                     /locus_tag="PXE92_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761049.1"
                     /translation="MISYVKAFKQWLEAHSLADGYVVQLYQWEDTQKAKPVIVIQPNS
                     GSPQVSDLSSEHYLLISLVAGKNSGYTIEERARAIMSKILVEPFASFGYIESMGGLPA
                     PIFTEDNRMIFRLPLRIISTNQEE"
     gene            7349..7831
                     /locus_tag="PXE92_001829"
     CDS             7349..7831
                     /locus_tag="PXE92_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761050.1"
                     /translation="MGSPSPQNNAENLVVGRAVVLEYGTTDAKPQESEWKVAGAMTTK
                     SWDFSPNSVTSEADDAGGFPETLITNSDFSISGDGEWRKRPKSKELGIKDLVVLYANA
                     VKNRTQPYIWVRLKYAGLTILGKMVITALSSEAPTNDLVKFSIEFKVGDSSTIEIAAA
                     "
     gene            complement(7871..8287)
                     /locus_tag="PXE92_001830"
     CDS             complement(7871..8287)
                     /locus_tag="PXE92_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL5761051.1"
                     /translation="MFYPALFTPAEEGGFVVTFPDLPEAITQGDTFEEAMEMAEDVLL
                     SCVEIYFDEDRRFPLTRPVNTDEVPVFMPESIYAKVLLHNTMQEQAVSKAEIARLTNI
                     RPPEVQRILAPRHITKIDTIGRILASLGKPLQLSLG"
     gene            complement(8343..8519)
                     /locus_tag="PXE92_001831"
     CDS             complement(8343..8519)
                     /locus_tag="PXE92_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010848235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL5761052.1"
                     /translation="MKQSEFLRWLKANGVEVENGSKHLKLYYKGKRSHLPKHPSQELK
                     TGLVEGVKKQLGLK"
     gene            8615..9286
                     /locus_tag="PXE92_001832"
     CDS             8615..9286
                     /locus_tag="PXE92_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761053.1"
                     /translation="MKMVSYPITEIGEMLIATDGRDFLFRPSFKNIYKIGSPQEIVKI
                     YALLHGCEIREILPHILTKSESHQSYFWSVLNSPVFGRKILQNAMIVMSCCCDDDISL
                     LIGEWLPSKSGVRYKLGKMPPETIINFAKNLMGHGVIGCCELPKKEQSAKNEFSESFD
                     AVEYISLARTHFNMSREDAENLTMTELQQLLKSQMPAENNSYGQFTEEEYDRIMAEYE
                     KRRAA"
     gene            complement(9301..9534)
                     /locus_tag="PXE92_001833"
     CDS             complement(9301..9534)
                     /locus_tag="PXE92_001833"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761054.1"
                     /translation="MKKDCTKQDFANWLNENQEVCWIKEVSIERILSCVDDYVAICNA
                     RSKDEFELLNDIRELFYSAHYKDFTPVLSGRFF"
     gene            9703..10161
                     /locus_tag="PXE92_001834"
     CDS             9703..10161
                     /locus_tag="PXE92_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761055.1"
                     /translation="MKKMIVFVASVLSSFVIASDWEIIEAAQNKVKAELIRKSEKKAE
                     LCLNVAQAVLITNQKVQKDTFSMCGEFSTEIVFSDSKAYSLAVCGKVKGKDIIGNPIE
                     SDYIYQRATKDFYFNYNGKKSAYYDPQSDLARLQEVSDSMFNAMQNRYCK"
BASE COUNT         3201 a         2150 c         2489 g         2765 t
ORIGIN      
        1 ggtgcttatt tggaagcgag cgaagcgcaa atctttcgcg gtaaatatca agaaatggaa
       61 tttgtgccga accctgattt tgatggccca tattacggct tagattttgg tttcgcgcaa
      121 gatccgacgg cggcggtcaa atgctgggta tttaatggcg atctgtacat cgagtttgaa
      181 gcaggcaaag tgggcttaga acttgacgac accgcagact ttattgccaa aggcgtgcca
      241 caaattgccg atcacgttgt gcgtgcagat tcggcgcgtc ctgagtcaat tagttacctc
      301 aaacgtcacg gcttaccgcg cattatcggt gtggagaagt ggaaaggctc ggtggaagac
      361 ggcattgagc atattaagtc ctacggcaaa gtctttattc acccacgctg tcagcaaacg
      421 ctcaacgaat ttcgccttta ttcgtacaaa accgaccgct tatcgggcga tgtattgcct
      481 gtcgtgattg atgcccataa ccactttatt gatgcgctac gctacgcatt aacgccgttg
      541 atgcaagtta aaagtgccaa aggagtttta ctatgagcct agagcaagac agactggctt
      601 ttttagccga agccctaggg cttggcaata tcaaacgaag aacgttatgg aaggagtttg
      661 gctaccctaa taccttaaca ttcaaccatt tcttaaaagc ctataagcgc aatagtatcg
      721 cttttgcagc gattaaccgc ttacttgacg gttgttgggt tgactgcccc gtaatcgttg
      781 agggtgagca aaagaacgaa tcaaagcaga caaccgaatg ggagtccaaa gttgaacgtt
      841 ttatgaaacg ctactggtcg gcaatcaaag aggcagatag acgaaacctt gtcggtaact
      901 attcggcgtt attacttcaa gtaagagatg gtcaacaatg ggatcagcct attttgcaag
      961 gcgcgctatc tagcattgga gagttcggac tggttaaact gatccccgtg tggcagtcac
     1021 agctttcagt gacagagttt caagaggatg tgaccgccga taattacggc gaaccgctga
     1081 tgtatcaatt cagcgaatct gcctttggca aaaaaagcgt gtcacgaaat atcaaggttc
     1141 acgcaagtcg tgtaattttg ctcaatgagg gtggcgactt taattcccct cattctggag
     1201 ttcctctgct tgaggcgggt tacaacaagc tagttgatct cgaaaaaaca tcgggcggca
     1261 gcgccgaagg ttttctgaaa aacgcaagcc gacaattagg gatcaaatta acaaaagatg
     1321 ttgatttgag acagctcgaa gacagcgcaa aagcccttgg gttttcttca ttttctgatg
     1381 cgttgaacga caagatcaag aaaatcaact caggaacaga ctcagccttg attactcacg
     1441 aaggtgatgc ctctgtgttg tcagtcgcac cagcagatcc gaagccaacg tgggaaattt
     1501 ctgcaaatga gtttgccgcc tcagtacaaa tccctttcac gattttgttc ggacagcaaa
     1561 cagggcgatt ggcaagtgac gaggacaaaa ccgactgggc aaaccgttgc aacggtcgtc
     1621 gaaatggttt tctcaccgat gtgataacac aactacttaa tcgcttgtgg ttcatcggtg
     1681 tgctacctat gccaaaaaat agcgatgtca cagtgtcttg gtctgactta cttgcaccaa
     1741 gcgaaaaaga gaaaatcgca aacgcacagg ctttggcttc agttgcaact acatcgcagt
     1801 ctgcctttgg ttttgccgcg gtaacagcga acgaaatccg cgaatcttta gggtttgaac
     1861 ctctgcctga taatctgatt ccgccaacaa ttgacgacga aaatgaagat caagacgaaa
     1921 atcaagccac tgcggattcc gacaaataaa gccgatccgc tcaatatggg agtgtcggtt
     1981 gccaagctat ttcgtcacat tgatgtcatt tactcacaaa ttaagcgctc cattaagcaa
     2041 caaatcttgc aaaagatgtc actgcgactg caagcaaata attttgagta ttttccttcg
     2101 tatcttactg cgactgagtt ggcggatttg cttgaaacct tgcaaaagat tatcgacaaa
     2161 gagattttgt cgaatggttc tcaaggcgaa aatctctggt ttgactccta tatcgacgaa
     2221 gcagcactaa aaggcactca gtctgcggtc actgatttag gtctgcaatc agaggcttat
     2281 cgcagtcagc gaaacttatc atcaatcgtt ttcagtcctg cgtacttcaa ccgattggcg
     2341 attgcacaca tggcaagtta tagcgagtgg caaggtttaa gcgacgagtt gcgaaaatct
     2401 ttggcggggg tgatcacgga ggcggtttta aacggcaaaa acgtgaaaga aactgcccgt
     2461 gagattcggc aaaaacttga tgtgtcatca aaacgggcga agcgaatagc gcaatcaagc
     2521 cagttggcgg catatcgtcg ggcagaatgg caagaggcgg aagaggcaaa agaagaactt
     2581 gggctaaaca ccaagctctt acatttttca gcgctcaaag ctactacgcg attagcacac
     2641 gcccaacgcc acggcaaata cttcgatgtt gcagaggtgc gcgaatggta tagccgagac
     2701 ggcaaccaat tcaactgtta ctgcaagcag tctgtggttg tggtcaacgc cgacggtaaa
     2761 acagatattg agcctctcct tgttgggttg gctaaagaac gtaaacaatg ggtaggagca
     2821 ttaaaaaatg tcaaaaaata acgtgaacat cgtcaccgtc attaacagca aaaatatcag
     2881 cacagaatct attgacggag atcaacacct gattatccgc ggcgttgtgc cgattgttga
     2941 tgatgttgtg atgaacgacg gactttatcc tgcggatgaa atcaataaaa gctacaacag
     3001 cttagagggc aactttatgc cgcttgggca tccaaaaatc gaaggtaaat acgtttcagc
     3061 ccaagatgtt cgagcggtga acaaacatca cgtcggtgcg tgggcgaaga acgtacgcaa
     3121 ggaaagtggc aaagtgctgg tcgatatgta tatcaaccgc cgctttgcgg aaggttcaga
     3181 acagggcaaa accttgcttg aacgacttga cggaatggtg acaaacacca acgctgaacc
     3241 tattcacgtt tccacagggc tgattctaaa caaagtcaag caatcgggta aatccaaagg
     3301 caagaaatat agctggattg cgacaaatat gtcgttcgat catattgcaa tattgcttga
     3361 tgtgccgggc gcggcgacac ctgatgatgg cgtggggatt tttgtaaacc aagacggaag
     3421 cgaaatgggg gtggaaaatg taaacctaac acaagcggcg gattaccgca cagaaaagct
     3481 gtttgacaaa gtacgatttt acctgatggc gaactcagat ttatcgtttg aagaaattca
     3541 tcgcgcgctg cgtgaagcta ttcgccccga aggcaaagat aagtggtcat tttgggtcga
     3601 agctgtttac ccgaaatact tcatctattc ggacgataac agcggcaaga aatacaagcg
     3661 gagctatttt attgacgaaa atgacaatgt gcagctcact agcgaacctg tcgaagttgt
     3721 caagaagatt ggctacgaag aaattacaac caatgaggaa cataatccaa tgaaaaccaa
     3781 aatcttagcc gtgttgaatg cggcaaacgt gaaaacggaa ggcttaaatg acgatcagct
     3841 cttggaagcc tacaacaagc tgcaagcgga taagggtaaa gagcctgaaa agcctaaaaa
     3901 tgaagatgac agcgaaattg atgagaaaat caagaaagca gtcaatgccg cgattgagcc
     3961 actccagcaa gccttgcaag ctaatactga caaagagcaa gcagcaatgc gtgcggcggt
     4021 gaaagccaag ttcaatatga gcgatgccgc agtcaatgct ttgcaaggcg aggtattaac
     4081 tgagttgtat gcgcaaacgc aacaatcggt cggattaaac aataattcgg caaacggcaa
     4141 cggcgacaat caatgggatg gttactcact caaccaagag gagaaaggca atgagtaatg
     4201 taatttatcg cggttcggtc aagcgtgaac ctcaaacggt gaatatcgtg atcaacgata
     4261 cttcggcacc gggtgcagta gttaaactcc acaacggcaa attagaggcg gcggctgatt
     4321 taaaaggtcg ccgtttttta ttgggcaaca accgctttaa ggggcagaca atcgaacaag
     4381 cgtatgcgaa gggcgatact gcaacggcgt ttcgtttaga gcctgaacag gagtattacg
     4441 cgcaaattgc cgacggcact tataactttg gcgatgaact cacggtaaaa caagcgggcg
     4501 gcaaactgac caaagcggag acgggcgatg tagtgctatt tttcttcgac gaagaatcgc
     4561 agcgtgtaat cagtggcggc aaaggctatg ccgatgtcgt ggtggcaaac gcctacacta
     4621 aataagaggt aacaaagcaa tgttgaaatt cacaaaagaa caagaacgct tcgtgattaa
     4681 cgagcggatc aattacgaca aaaaacacgc gctaatggca gcaaattcgg cggggttatt
     4741 gggcaacgcg atgactttgc cgaaagatgt ctgggcggaa tgggatcgtg atgcagtgca
     4801 aattcagcgc gaagaattgg tggtgtttaa cgatttagcg ggcatttcaa aatcaatgcc
     4861 gattggcaaa cttattcacc atttccaaac ggtatctgat agcggttcgg ttaatatctc
     4921 attagacggt cgttcatcag cgaaaaccga taacgtggtg cttaactacc acggtacacc
     4981 gttgccgatt attgattcca ctttctcttt tggctggcgc gatatgtcgg cagctcaaag
     5041 cgaagggtat cagatcgacg gtgcagcacg cgcgaacagt ctccgcaagg tggctgaaaa
     5101 aatggaagat ctcgctttaa atggtgattc ctctattgtg gttggcaatg ccaagcttta
     5161 cggcttgcgt actgcgccaa atcgtatgac taacacacac aatctggatt tagccactgc
     5221 gacaccgaaa gaaatttacg atgtgttccg tgacttgatt agcaaattcc acgcgaagaa
     5281 ctactactct cctgtaacgc tttatgtgaa ctatggcgac tatttcgcaa tgagtacacg
     5341 tgattactcc gagcagaaat ccgaaggatc tatcttgaac aaagtgatga cgattccgca
     5401 aattgcgaaa atcgtgccag caagccgtgt accgcaaaat gaaattctcg gcttgtgcaa
     5461 gcgttcggat gtgtaccaag tgcttaacgg tatgccgtta gtgactcgtc cgattgcgcg
     5521 ccataatgaa accgatgatt actcgttcca aattatggca gccgttgccg tggagttcaa
     5581 attcgacgat aaaggcaatg ctggctatat ccagtacact aaatcctaag gcggtgcaaa
     5641 atgaagtggc tattaacaca cgatagccac gagttgaaga aaggcgatgt ttacgaaggc
     5701 gaaacattac cgctttggct tgtgggcaaa gctatcgaaa tcgaagaaaa atcctttgaa
     5761 gttgcaacgc cttctgatca cgctgacggc gaaactggcg aaactggcga aactggcgaa
     5821 actggcgaaa ctggcgaaac tggtcagaaa ggcaaaaaag ataaaggcaa ataactatgg
     5881 cagcagaaat agagctatcc gaagcgcgaa caacgcttga cgaactgggt ttcacttcgc
     5941 cgaactctct gcttgagctt tacgttcagc aaacgaacac cttagaccag gcgttgaaca
     6001 aatcggggta cagcgaagaa acacagaaac tgatcaagct ctatctggtt gctattcttg
     6061 caatttcatc tggggcgcgc cgtataaagt cagaaggtgc gcctagcggt gcaagccgaa
     6121 cgtttgagta tgatccaaac gcgctagaca accttaagtc ggcgattcgc tcaattgatc
     6181 cgaaaggttg cgctgaaagt ttgctaccca aagataaagt tgtcggcttt ttcgatgtgg
     6241 tcggaggctg ctaatgtcaa atttatcgaa ttggtcctac accgcaaaag ccacgctttg
     6301 gcaggctaaa ggaaagaacg atgacggcgt tttagttttt tctacgccac aaatcatttc
     6361 ctgtgactac ggtgcagata gaaagcgcgc acgttttgag attgggcgtg aacaagcggt
     6421 caaaaatgtg atctggacgg agttcgccca cgccaaatta ggcgattatg ttctgattgg
     6481 cgaaagcgag caagccgatc cgattttggc tggcgcagag gaaattattc atatacagcg
     6541 ctttgctgat acgttcgacc gcaatcgtga tgattttgcg ctgataacag gcgggtaaaa
     6601 tggggatcaa agtaaaaggc ataagacagg tcaagcagcg gctgaatcag gttgttggcg
     6661 aggttcagag ccaaaaagca actcgggcaa tgtttcgcat tttgaatgcg gttgcccctc
     6721 ttgcggcgca ctatacgcct gttgatacct caacgttgat caacagtcaa ttcactgaaa
     6781 tggaagtgaa cggcacacgc ttgattggaa gagtgggtta ttctgctaat tatgcggctt
     6841 acgttcacga tcctaatatc aagcaaaact tccgcaagcc ttcagcgaag aaagagtttt
     6901 tgacttccgc gctgaacgaa tcaaaggcta cgatcaaatc cattgttaaa gaggagttgt
     6961 cactatgatt tcttatgtca aagccttcaa acaatggtta gaggctcact ctcttgcaga
     7021 cggctatgtt gtgcagcttt accagtggga ggatacgcaa aaagccaagc ctgttattgt
     7081 tattcagcca aatagtggtt cgccgcaagt ttctgacctg agcagcgaac actatctgct
     7141 aattagcctt gttgcaggta aaaattcagg ttacacaatc gaagagcgag caagggcgat
     7201 tatgtcaaag attttagttg agcctttcgc ttcctttggt tacatcgaat caatgggcgg
     7261 attacccgcc ccaattttca ccgaagataa tcgaatgatt tttcgcttac cacttcggat
     7321 tatttcaaca aatcaagagg agtagtttat gggttctcca tctccacaaa ataacgcaga
     7381 aaatctcgtg gtggggcgtg ccgtagtttt agagtacggt acgactgatg caaagccaca
     7441 agaaagcgaa tggaaggttg cgggcgcaat gacgacaaag agttgggatt ttagcccaaa
     7501 ttcggttaca tcagaggctg atgatgctgg cggcttccct gaaaccttaa ttacaaactc
     7561 agactttagt atttctggtg acggtgagtg gcgcaaacga ccaaaatcga aagaactagg
     7621 catcaaagat ctagttgtgt tatacgcaaa tgcggtaaaa aatcgcaccc aaccttacat
     7681 ttgggttcgt ttgaaatacg caggcttaac aattctcgga aaaatggtta tcactgcatt
     7741 aagtagcgaa gccccaacca atgacttagt gaaattctct atagagttca aggttggcga
     7801 ttcaagcact atcgaaattg ctgcagcgta aaaaatccca ccctctataa caagagcggt
     7861 gggattatca ttatcctagg gatagttgta ggggctttcc taagctagcc aaaatacgac
     7921 caatagtgtc gatttttgta atatggcgag gggctaaaat tcgctgtact tctggcggac
     7981 ggatattagt taatcgggca atttctgcct tgcttaccgc ttgttcttgc attgtattat
     8041 gcaaaagcac ttttgcgtag atgctctctg gcataaacac aggcacttcg tcggtattta
     8101 ctgggcgagt gagcggaaag cgtctatctt catcgaaata aatttcaaca caagatagta
     8161 gcacgtcttc tgccatttcc attgcttctt caaatgtatc gccttgggtg atagcttctg
     8221 gcaaatcagg aaatgtcact acaaagcccc cttcttcagc gggggtaaat aacgctggat
     8281 aaaacatatt ttctccttat tcaagggtgt agtgaaagcc ccttaacatc aggggcttta
     8341 tattatttta agcctagttg ctttttaacc ccttccacta agcctgtttt taactcttgg
     8401 cttgggtgtt tggggaggtg gcttcttttg cccttgtagt agagtttcaa atgctttgat
     8461 ccattttcaa cctctacccc attagccttt agccacctta ggaattcgct ttgcttcact
     8521 acctcctcct atttgtttaa cttgggttca ttatatgcaa aaatgctaac tttgtcaaca
     8581 gaaagttagc aaaaatgcta atttttttgt tgaggtgaaa atggttagct atccaattac
     8641 tgaaattggt gaaatgctta ttgcaaccga tgggcgagac tttttattca gaccgagttt
     8701 caaaaatatc tacaaaattg gaagcccaca agaaattgta aaaatctatg cactattgca
     8761 cggctgtgag attcgagaga tattgccgca cattttaacc aaatcggagt ctcatcaatc
     8821 ttacttttgg tcagtgctga attcgcctgt ttttggcaga aaaattctgc aaaacgcaat
     8881 gatcgtgatg tcgtgctgtt gcgatgatga tatttccctg ttgattggcg agtggttgcc
     8941 gtcaaagtct ggcgttaggt acaagttggg taaaatgcca cctgagacaa ttatcaattt
     9001 tgcaaaaaat ttaatgggtc acggagtgat tggttgctgc gaattgccaa agaaagaaca
     9061 atctgcaaaa aatgaatttt cagaaagttt tgatgctgtt gagtacataa gtttagcccg
     9121 aactcatttc aatatgagcc gcgaagacgc tgaaaatctc acgatgaccg aattgcagca
     9181 acttctaaaa agtcaaatgc ctgccgaaaa taatagctat ggacagttca ccgaagaaga
     9241 gtacgacaga attatggcgg aatatgagaa aagaagagcg gcttaaatag ccgctaacat
     9301 ttaaaagaac ctacctgata gaacgggagt gaaatccttg taatgtgctg aataaaaaag
     9361 ctctcttatg tcattgagta gctcaaattc atctttggat cttgcgttgc agattgccac
     9421 atagtcatct acgcaggata aaatacgttc aatactgact tcttttatcc agcatacttc
     9481 ttggttttca ttcagccagt tggcaaagtc ttgtttagtg cagtcttttt tcataagttc
     9541 tcctttttga ttatttgcaa aaaaaatcat atcaaatcat ccgttgttat ctattggcga
     9601 aaataatttt tgcgacacag atcgcaaaaa taggttttga cggtggaaaa acgaatctta
     9661 attcgtagaa tggtaaaatt tctttatttt taaggtattt ttatgaaaaa aatgattgtt
     9721 tttgtagctt ctgttttgtc atcttttgtt attgcatcgg attgggaaat aatagaagcg
     9781 gctcaaaata aggtgaaagc agagcttata agaaaatcag aaaaaaaagc agagttatgt
     9841 ttaaatgttg ctcaggctgt cttaattact aatcaaaaag tacaaaaaga tactttctca
     9901 atgtgtggtg aattttcgac agagattgtc ttttctgact ctaaagcata tagccttgca
     9961 gtatgtggaa aggttaaagg taaagatatt atcggaaatc cgatagagag cgactatata
    10021 taccaaagag caactaagga tttttacttt aattataatg gcaaaaaatc agcttattat
    10081 gatcctcaat ctgatcttgc aaggcttcaa gaggtctcag actctatgtt taatgctatg
    10141 caaaatagat attgtaagtg atgcttgcat tggtttttaa atatttaact caaataattt
    10201 atgtgttttt agtttaatag ggcgatttat ggatgtaaag gtaattaacg tcttactaat
    10261 tattcttttt tcagcaattg taataggttt attccttttt caagaatcaa gattaagaga
    10321 tccaaacaac cattcagtga tatatttaga gcagattcaa gaaatgtgca gcttagataa
    10381 aataggctca taccagattg attttgtacg acaaagtggg aatgagtaca aagagagtat
    10441 tcttgttaat gattttgagt tagcaataaa aaccgtatta tccacgttaa gaagggcaaa
    10501 aatagatagt gtgccagtaa tatctaacac acttatttat tatccaccga gctttctaca
    10561 acgcaagagg tagtcaagaa ggaaagaaat taggatcgat aagga
//
LOCUS       DANMBQ010000089        10281 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.089, whole genome shotgun sequence.
ACCESSION   DANMBQ010000089 DANMBQ010000000
VERSION     DANMBQ010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10281
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.089"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..411)
                     /locus_tag="PXE92_001835"
     CDS             complement(<1..411)
                     /locus_tag="PXE92_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
                     /protein_id="HDL5761056.1"
                     /translation="MNLIICCTPLQVLIAEKIIEMHPNERFYGVMLSTVKNAKFDFYQ
                     ARLAQKCEQFFAMQQHSERIQLLKEIIYLKRTFGGKKFNKVFLANINELEIQFLLSAI
                     SFQELNTFDDGTANIVQNSIFYQAENIGLNRKLIN"
     gene            complement(408..1613)
                     /locus_tag="PXE92_001836"
     CDS             complement(408..1613)
                     /locus_tag="PXE92_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase"
                     /protein_id="HDL5761057.1"
                     /translation="MKAVKDSVIYLIGELASKSIPFLLLPYFSRKLGVAGYGELSYYQ
                     TFAALFVIFIGLSQDGAVARYFYFYGKRSLNLVLSTGYLYTLCATLLILLGCWYFQSE
                     IIAYVAIGAMFQSFLNVQLSVRQCQKQALAYTTIQLMSAIFSAVITVAMMEYFKTDLV
                     EKRILAILMSNGLVFLIAYFLYAKRAKTKKFSLARHKTALLYLFGFGIPLILHHSSIF
                     LKGQLDRVFIYHKFSEEDLGLYAMGAQIAMILAIVVQALNKATLPYFYEALKQKKINV
                     SHIHKWALYALFIVPLPAIVMWFIPEELVVWILGSQFVGTKYYIILFLIATMLVVPYL
                     ILVNYLFFYGKNKLISLCSILSTIFYLVALFALTFSKIEYIPFASIIGAISIIPILYI
                     MTAKVGKTV"
     gene            complement(1623..2807)
                     /gene="neuC"
                     /locus_tag="PXE92_001837"
     CDS             complement(1623..2807)
                     /gene="neuC"
                     /locus_tag="PXE92_001837"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDL5761058.1"
                     /translation="MKNIAYITGSRAEYGIVKRLLQKLAQDPTVNFSLVVTAMHLDPQ
                     YGNTVTVIEQDGFEIAARIPLTLNSENNQTIIHSMAECLDRFGEHFQQHRYDAVIVLG
                     DRYEMLAVATAAAMHNIPLIHLHGGEQTLGNYDEFIRHCITKMSKLHLTSTEEYRQRV
                     IQMGELPENVVNTGSLGAENSLDLVLPTQAELVERLGIPASPYFLVVFHPETLTDVSV
                     LEQIEALLNAFEQFKDKYQFVFIGSNSDTNSEQIYARFKAYTDENQFKFFTSVKPEEY
                     LALIKYSNGLIGNSSSGLIEAPSCGVGTLNIGNRQQGRVRDESVIDVESNEQAIIDGI
                     EKLISADFQHRLPSMKNPYFQDNAMEKAYNAIKIFLADSHHTQPKGFYDVAFSQAVKK
                     SE"
     gene            complement(2808..4067)
                     /locus_tag="PXE92_001838"
     CDS             complement(2808..4067)
                     /locus_tag="PXE92_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL5761059.1"
                     /translation="MKKIAIITARAGSKGLPNKNVLLANGKPLMAYSIEAAIESGQFE
                     KIIVSTDSQEYIDLFSHYPIEFIKRAEHLASDKASSFVVIEDVLNQYRSVEFDYFMLL
                     QPTSPLRSGEHIKESCEKFEKNFEQFDFLVSVSDAHKPTTLTRMIEEDECLKHFQLDY
                     SNYARQLHHPEYSPNGAIFTAKPEAYLKQKHFYGAKCLAYFMDKDVSIDIDDRQDFEY
                     FYFILQQRNKEKILLETIKRSILMKKENFKEVKEIALIGHSIIEYWDIEHLNGKAVNN
                     LGIAGISTKQYSDLILDEGLISALPKDIILMFGTNDIVYAGWSDEKILADINHLIAQL
                     TAIRGDINLYFLEITPTAFRVDRNNNDIRLLNQYLKDNLAVKWISLDQAFSDKYGKLD
                     LSYSDDGLHLNAKGYEKLTAILEKELN"
     gene            complement(4127..5164)
                     /gene="neuB"
                     /locus_tag="PXE92_001839"
     CDS             complement(4127..5164)
                     /gene="neuB"
                     /locus_tag="PXE92_001839"
                     /EC_number="2.5.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase"
                     /protein_id="HDL5761060.1"
                     /translation="MVNVFIVAEIGCNHNGDPALAKKMVDVAKECGVDAVKFQTFKAD
                     KLISKYAPKAEYQKVTTGTADSQLEMTRKLELPYEEFVKLEAYARSLGLEVFSTPFDF
                     ESIDFLASQQQKVWKIPSGELTNLPYLEKIARLPIEGKTIVISTGMATIEETKASLKV
                     LEDNGVAKKDITILHCNTEYPTPYEDVNLNAFHQLKQEFGDYSLGFSDHSAGYFAGLA
                     AVPYGITFIEKHFTLDKNFEGPDHKASVTPEELKLLCEGIRAVEKSLGSSEKLVTNSE
                     AKNKIVARKSIIAARPIKKGEIFTTENITTKRPGNGISPMFWYDVLGKEAQQDFEEDQ
                     LIQDSRFENQM"
     gene            complement(5164..5808)
                     /locus_tag="PXE92_001840"
     CDS             complement(5164..5808)
                     /locus_tag="PXE92_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDL5761061.1"
                     /translation="MQQKSKREKLILIGAGGYAKSVLDSLDHEQYEFCGLIDNFKPEG
                     SVHLGYPILASTIDCFSKRDNYHYFICIGNNSYRLEKFSKLQKYKCRIINVVDKTALV
                     SKNSTLGIGVFVGKMAIVNSGVTVGDNVIINTKSLVEHGCFIGSHCNISTNTTLNGDV
                     IVEDHAFIGSSSVVNGQLRVGESALVGSGAVVIRNVEPRTVVAGVPAKYIKDIK"
     gene            5941..6684
                     /locus_tag="PXE92_001841"
     CDS             5941..6684
                     /locus_tag="PXE92_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5761062.1"
                     /translation="MFEFIKLITAMILPPFNIILLWLLALILFSLGYKYAAYFFALLG
                     ILILYIFSIPYTSQKLGDSLVEAEPFTIEKYKNAQAIVVLGGGLRDSQELFGKLAITG
                     IPLERMRYAAYLHKETGLPILATGSSPNGTSEAKVMADEFKMFFNIETKWLENKAKTT
                     KENAIFSREILEKENIHKIILVTNQWHMKRAEMLFSQQGFEVMSASVGSGDTPDHYKL
                     NFMHFIPQAGAMNSNMLALKEWIGYWKEK"
     gene            complement(6761..8959)
                     /gene="priA"
                     /locus_tag="PXE92_001842"
     CDS             complement(6761..8959)
                     /gene="priA"
                     /locus_tag="PXE92_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDL5761063.1"
                     /translation="MALNVPLHRYFDYLLPPAFNACQGGRVVVPFGRQTKIGIVVDFP
                     QTSDVPTEKLKPIKAALDSSPIFDSEMWQLLNWAARYYHAPIGEVLTGALPIKLRNGD
                     STERVQPNYFVVTEQGRKSLIIGENKKAKKQVERLTELAECAKYFEKPTACSPSAWKG
                     LLEKGYIEKIDVPFMAQAWQDSLGEFPLVNTNNRLILNKQQTLVVSRLNAQTTFASFL
                     LNGVTGSGKTEVYLQLIETVLKREEQVLLLVPEIGLTPQTVQRFKARFNVEIDVLHSN
                     MNETERLNAWLRAKNGESAIVIGTRSALFTQFQKLGVIILDEEHDSSFKQQDGWRYHA
                     RDLAVVRAKNANIPIVLGSATPSLESLHNVQNGKFIELTLTARAGNAQLANQQIIDLK
                     TQRVTAGLSERLLSMMKTQLEQGNQVMLFLNRRGFAPVLLCHECGWVCECEACNKPFT
                     YHQKQKVLRCHHCATQRVIPRQCGHCGSTHLITTGVGTEQLEQVLNQQFPHYQVTRID
                     RDSTARKGALENHLTAIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFR
                     AEEKLAQLYIQVAGRAGRAEKKGEVVLQTHYPDHPLLKTLLEQGYRAFADEALKMRQL
                     MSLPPFSSQVLFKATGKDNQQTLQLLEQLADYFSQKIQQQNGQGFQLPPPFSAPMAKK
                     AGHYRWLLLIQHPLRGALQQLLDAFDQERESLNIPNNIRLNIDIDPQEIS"
     gene            complement(8971..9583)
                     /locus_tag="PXE92_001843"
                     /pseudo
     CDS             complement(8971..9583)
                     /locus_tag="PXE92_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818858.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
     gene            complement(9576..>10281)
                     /gene="rarD"
                     /locus_tag="PXE92_001844"
     CDS             complement(9576..>10281)
                     /gene="rarD"
                     /locus_tag="PXE92_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5761064.1"
                     /translation="KQEPYLLLVILITASIVGGQMWLFLWAPNSGKAIEVSMGYLLMP
                     IIMVAFGKVVYKETLSLNKWLAIVVAFIGVASNILFTGKISIASLFVCTGYPIYFYLR
                     RKFGLSHLHSFVVEILYLLPVACYFISQTDMQYVETQNLNIYYFIALLGLISGTALIS
                     YTLASTILPFNLLGLLGYVEPLLMLVVSFLIGERLANESYLLMICLLISISFLVLDGM
                     FALRQQRKRKLSVNNE"
BASE COUNT         3177 a         2184 c         1838 g         3082 t
ORIGIN      
        1 gttaatcaat tttcgattta acccaatatt ttcagcttga tagaaaatac tgttttgtac
       61 aatattagct gtgccatcat caaaggtatt gagttcttga aatgaaatgg cacttaacag
      121 aaattgaatt tctaactcat tgatatttgc taaaaagact ttattaaact tcttaccgcc
      181 aaaagtacgt tttaaataaa taatttcttt taataattga atacgctcgc tatgttgttg
      241 catcgcaaaa aattgttcgc acttttgggc taatctagct tggtaaaaat caaatttcgc
      301 gttttttacc gtagaaagca tcaccccata gaatcgctca ttagggtgca tttcaatgat
      361 tttttcagca atcaacactt gcaagggcgt gcaacaaata attaaattca tacggttttt
      421 cctacttttg ccgtcattat ataaagaatc ggaataatgc tgattgcacc aatgatgctg
      481 gcaaaaggaa tatattcaat tttagaaaaa gttaaagcaa atagtgcaac taaataaaaa
      541 atagtagata aaatcgagca aagcgaaatt agcttatttt tgccataaaa aaacaaataa
      601 ttgactaaaa tgaggtaagg cacaaccaac attgtcgcaa ttaaaaagag aataatgtag
      661 tattttgttc ctacaaattg gctacccaga atccatacca ctaattcttc cggaataaac
      721 cacatcacaa tagcaggtaa tggtacaata aataaggcat acaacgccca tttgtggata
      781 tggctgacat taattttttt ctgctttaag gcttcataaa aataaggcag tgttgcttta
      841 tttaaggctt gaaccacaat ggctagaatc atcgcaattt gagcccccat tgcatataaa
      901 cctaaatcct cttcgctaaa tttatggtaa ataaatactc tgtctaactg tccttttaag
      961 aaaatactgg aatggtgcaa aatcaacgga ataccaaagc cgaataaata caataaagca
     1021 gttttatggc gggcaaggct aaatttcttc gtttttgctc ttttagcata caaaaagtaa
     1081 gcgattagaa agactaagcc attactcatc aaaatcgcta aaatccgctt ttccactaaa
     1141 tcggtcttaa aatactccat cattgcaacg gtaataactg ccgaaaaaat cgccgacatt
     1201 aattgaatcg ttgtataagc aagtgcctgt ttttgacact gccttacact aagctgtaca
     1261 ttcaaaaacg actggaacat cgccccaatc gctacataag caataatttc agactggaaa
     1321 taccagcaac ccaacaggat aagcaaagtt gcacaaagag tatataaata ccctgtactc
     1381 aagactaaat ttagtgaacg cttaccataa aaatagaaat agcgagcaac cgcaccgtct
     1441 tggctaagcc cgataaaaat tacaaataaa gcagcaaagg tttggtagta ggaaagctcc
     1501 ccataacctg ccacgccgag tttgcgtgaa aagtagggta agagcaagaa aggaattgac
     1561 tttgacgcca attccccaat taaataaatc acactgtctt taactgcttt catagttgca
     1621 aattattctg attttttgac cgcttgcgag aaagcaacat cataaaatcc tttcggttga
     1681 gtatggtggc tgtctgctaa gaatattttg attgcattgt aagccttttc catcgcgttg
     1741 tcttgaaaat atggattttt catactcggt aaacggtgtt ggaaatcggc tgaaatcaat
     1801 ttttcgatac catctatgat agcctgttca ttactctcta catcaattac gctctcatcc
     1861 cgtactcgcc cttgctggcg attaccgata tttagcgtac caacaccaca actcggtgct
     1921 tcaatcaagc ctgatgagct attaccaatc aacccatttg aatatttaat caacgctaaa
     1981 tactcttccg gtttgactga ggtgaaaaac ttaaattgat tttcatcggt gtaagcctta
     2041 aaacgtgcat aaatttgctc tgaattggtg tctgaatttg agccgataaa gacgaattgg
     2101 tatttgtctt taaactgctc aaaagcattg agtaacgcct caatttgctc caacacggaa
     2161 acatcggtta aggtttccgg gtggaagacc actaaaaaat aaggcgatgc cggaatccct
     2221 aatctctcga ctaattctgc ttgggtcggc aacactaaat ccaaactatt ctccgcccct
     2281 agagaaccag tattcaccac attttcgggc agctcgccca tttgaatcac acgctgtcta
     2341 tattcttcag ttgaagttaa atgcaatttc gacattttgg taatacaatg gcgaataaat
     2401 tcatcgtaat tacctaatgt ttgctcacca ccgtgcagat gaatcagcgg aatattatgc
     2461 atcgccgcag ccgttgccac cgccaacatc tcgtaacgat cgcctagcac aatcaccgca
     2521 tcataacgat gttgctggaa atgttcgcca aatcgatcta aacactctgc cattgaatga
     2581 ataatggtct gattattttc actgtttaag gtaagcggaa tacgagctgc aatctcaaag
     2641 ccatcttgct caatgaccgt caccgtattg ccatattgcg gatccaaatg catcgcagta
     2701 acaaccagag agaaattcac agtcggatct tgtgctaatt tttgtaataa acgctttaca
     2761 atcccgtatt cggcacgaga tccggtaata taggcaatat ttttcattta gttgagctct
     2821 ttttccaaaa tagcggttaa tttttcataa ccttttgcat ttaaatgtaa tccgtcatcg
     2881 ctatagctta aatccaattt gccatattta tcgctaaatg cctgatctaa gctaatccat
     2941 ttcaccgcta aattatcttt aagatattga tttaacaagc gaatatcgtt gttattacga
     3001 tcgactctaa atgcagttgg ggtaatttcc aagaaataga gattaatatc tccacgaatt
     3061 gctgttaatt gtgcaattaa atgattaata tctgctagaa ttttttcatc actccagcca
     3121 gcatatacaa tatcattagt accgaacatt aaaataatgt ctttaggtaa agcagaaatt
     3181 aaaccttcat ccaaaatcag atcactgtat tgttttgttg aaatacctgc aattcctaaa
     3241 ttattaactg ccttaccgtt taaatgttca atatcccaat attcaatgat cgaatgcccg
     3301 attaaggcta tctctttcac ttctttaaag ttctcttttt tcattaaaat cgaacgttta
     3361 atggtttcaa gtaagatttt ttctttattg cgttgttgca gaataaagta gaagtactcg
     3421 aaatcttggc gatcatcaat atcaatagaa acgtctttat ccataaaata ggctagacat
     3481 ttcgcaccat agaagtgttt ttgtttaaga taggcttctg gcttagctgt aaaaatagct
     3541 ccattcggtg aatattcagg atgatgcaat tggcgtgcat agttagaata atccaactga
     3601 aaatgcttta ggcactcgtc ttcctcaatc atacgagtca atgtcgtagg tttatgggca
     3661 tcagaaacag atactaagaa atcaaattgt tcgaaatttt tctcaaattt ttcacacgat
     3721 tccttaatat gctctcctga tctcaacggc gaagttggtt gaagtagcat aaaatagtca
     3781 aactctactg atctatattg atttaacaca tcttcaatca cgacaaaaga actcgcctta
     3841 tcactggcta aatgctcggc acgtttaata aattcaattg gataatgtga gaacaaatca
     3901 atgtattctt gggaatcagt actaacgata attttctcaa attgccccga ctcaatcgca
     3961 gcttcaatag aataggccat taacggctta ccgttggcta ataatacatt tttattcggc
     4021 aagccttttg aaccggctcg ggctgtaata attgcaattt ttttcataaa tttgaccgct
     4081 tgttaaacac aaaatgatgg agctttcatc ccatcactat attatattac atctgatttt
     4141 caaaacgaga atcttgaatt aattgatctt cttcaaaatc ctgttgtgct tctttaccta
     4201 gcacatcata ccaaaacatc gggctaatgc cattaccggg gcgtttagtc gtaatatttt
     4261 cggttgtaaa aatttcgcct tttttaattg gacgtgccgc aataattgat tttcttgcca
     4321 caattttatt ttttgcttcc gaattagtga ctaatttctc ggaagaaccc agcgattttt
     4381 ccaccgcacg aatgccttca cacagtaatt tcagctcttc aggtgtaacc gaagctttat
     4441 gatccggacc ttcaaagttt ttatctaagg taaaatgttt ttcaatgaag gtaatgccgt
     4501 aaggtactgc cgccaaccct gcaaaataac cggcagagtg gtcagaaaaa cctaaactat
     4561 agtcgccaaa ctcctgtttt agctgatgga acgcatttaa attcacatct tcataaggtg
     4621 tcgggtactc ggtattacaa tgtaaaatcg taatatcttt tttcgctaca ccgttatctt
     4681 ccaatacttt taatgaggct tttgtttctt caatggttgc cataccggta gaaataacga
     4741 tcgtcttgcc ttcaatcgga agtcgtgcaa ttttttctaa atacggcaaa ttggttaatt
     4801 caccagacgg aattttccac actttttgtt gttggcttgc caagaaatca atcgactcga
     4861 aatcgaatgg cgtagagaat acctctaacc ccaatgaacg agcgtaagcc tctaatttca
     4921 caaactcctc ataaggtaac tctaatttgc gggtcatttc taattgggaa tcagcggtgc
     4981 cggtcgttac tttttgatac tcggctttag gggcatattt agagatcaac ttatccgctt
     5041 taaaggtttg gaatttcacc gcatcgacac cacactcttt cgctacatca accattttct
     5101 ttgctaacgc aggatcgccg ttatggttac aaccgatttc tgccacaata aatacattta
     5161 ccattatttt atatccttaa tatattttgc tggaacgcct gctacaactg tgcgaggctc
     5221 cacatttcta attaccactg caccggagcc aaccaatgca ctttcaccca ctcttagctg
     5281 tccgttcaca acagaggaac taccaataaa agcatgatct tcgacaatta catcgccatt
     5341 tagtgtcgta ttggttgaaa tattgcaatg actgccgata aaacaaccat gctcaaccag
     5401 cgatttagtg ttaatgatca cattatcgcc tacagttacg ccactgttta caattgccat
     5461 ttttccaaca aacactccaa tgcctagagt ggaatttttg gacaccaatg cggttttatc
     5521 taccacatta attattctac acttatattt ttgtagctta gagaattttt ctaaacggta
     5581 actattattt ccaatacaaa taaaatagtg ataattatct cgtttagaaa aacaatcaat
     5641 tgttgaagct agaataggat aacctaagtg cacactacct tcaggcttaa agttatcgat
     5701 aagtccacaa aattcatatt gttcgtgatc aagtgaatct aacactgatt tggcatagcc
     5761 accggcaccg atcaaaatca atttttctct tttagacttt tgttgcattg ctatcaccca
     5821 tgatgaattt caattcatat ggagtattct aatacttttc aagatagaaa aatagacaag
     5881 tcttatataa tttaggaaaa tgaacatatc tttacttatt tttactacga tattctttct
     5941 atgttcgagt tcattaaact gatcaccgca atgatcctcc cgccatttaa tattattttg
     6001 ctgtggttgt tagcattaat cctcttttct ttaggctata aatacgctgc ttacttcttt
     6061 gccttgttag gtattctgat tttatatatc ttcagcattc cctatacttc acagaaatta
     6121 ggggattcat tagtcgaagc agagccattt accatagaga aatataaaaa tgctcaagcg
     6181 attgtggtgc taggtggcgg gctacgagac agccaagagt tattcggcaa actggcaatt
     6241 accggtattc cgctggaaag aatgcgttat gccgcttatc tgcataaaga aaccggctta
     6301 ccgattttag cgaccggaag cagcccaaat gggacttctg aggcaaaggt tatggcagat
     6361 gaatttaaaa tgttcttcaa tattgagacc aaatggctgg aaaataaggc gaaaaccacc
     6421 aaagaaaatg cgattttcag ccgtgagatt ttagaaaaag agaatattca taaaatcatt
     6481 cttgttacca accaatggca tatgaaacgg gctgaaatgc tgtttagcca acaaggattt
     6541 gaggtgatgt ctgccagcgt cggttctggc gatacgcccg atcattacaa actcaacttt
     6601 atgcacttta ttccgcaagc cggtgcaatg aatagcaata tgctggcatt aaaagagtgg
     6661 attggttatt ggaaagagaa ataaccgaag ataaatagca gcaaggcagg ttttcacctg
     6721 ccttcttttt gcaaaaaatc agtcaaaaac aaccgcttgt ctaactaatc tcttgtgggt
     6781 caatgtcgat attcagcctg atattattcg gaatgtttaa actttccctt tcttgatcaa
     6841 aggcatcgag tagctgttgt aatgctcctc ggagagggtg ttgaatcagc aataaccagc
     6901 ggtaatgtcc tgctttcttc gccattgggg ctgaaaatgg tggagggagc tggaagcctt
     6961 gcccgttttg ttgctggatt ttttggctaa aataatctgc taattgctca agcagctgta
     7021 aggtttgttg attatctttg ccggtcgctt tgaacaaaac ttgcgaggaa aatggtggca
     7081 aactcattaa ttgcctcatt tttaacgcct catcagcaaa agctcggtag ccttgttcca
     7141 gcaaggtttt aagcagtggg tgatcagggt aatgggtttg tagcaccact tcgccttttt
     7201 tctccgctcg ccctgctctg cctgccacct gtatgtaaag ctgtgctaat ttttcttccg
     7261 cacgaaaatc agttgaaaat aacgctgaat ccacattaac aatcgccacc aacgtcacat
     7321 tcgggaaatg atgccctttt gccaacattt gcgtaccaat caaaatttgg cttttgccct
     7381 ctcgaatagc ggtcaaatgg ttttccaatg cacctttgcg agcggtagaa tctctgtcta
     7441 tacgagtcac ttggtaatga gggaattgct gatttagcac ctgctcaagt tgttctgtgc
     7501 cgacaccggt agttattaaa tgggttgaac cacaatgtcc gcattggcgg ggaattaccc
     7561 tttgggtggc acaatgatgg caacgcaaca ctttttgctt ttggtggtaa gtaaaaggct
     7621 tattacacgc ctcgcactca caaacccaac cgcattcgtg acaaagtaat accggggcaa
     7681 agccacggcg atttaaaaac agcatcactt gattgccttg ctctaactgg gttttcatca
     7741 ttgaaagcaa gcgctccgac aaaccggcag ttacccgttg cgtttttaaa tcaataatct
     7801 gctgattggc aagttgtgca ttgccggccc gagcggttag tgtcagttcg ataaatttcc
     7861 cgttttgcac attgtgcaaa ctttcaagac ttggcgttgc cgagcccagc acaatcggaa
     7921 tatttgcatt tttcgcccta accaccgcca aatcccgtgc gtggtaacgc caaccgtctt
     7981 gttgcttaaa cgagctatcg tgttcttcat ccaagataat cacgcccaat ttttgaaact
     8041 gggtaaataa agcagagcga gtgccgatta caatcgcact ttctccattt ttcgcccgca
     8101 accacgcatt taaccgctca gtttcgttca tattcgagtg caatacgtca atttcaacgt
     8161 taaagcgagc tttaaagcgt tgtaccgttt gcggtgttag cccgatttca ggcacaagca
     8221 gcagcacttg ttcctctcgc ttaagcaccg tttcaattaa ctgcaaatac acttcggttt
     8281 tgcccgagcc tgttacgcca ttgagtaaaa agctcgcaaa agtggtttgt gcatttaaac
     8341 ggctgaccac taaggtttgt tgtttattta agatcagccg attgttagta tttactaacg
     8401 gaaattcacc tagtgagtct tgccacgctt gtgccataaa cggcacatca attttctcga
     8461 tatacccttt ttcgagtaag cctttccaag cagatgggct acaagcggtc ggtttttcaa
     8521 aatattttgc acattcggca agctcggtta accgttccac ctgctttttg gcttttttat
     8581 tttcaccgat aatcagagat ttccgccctt gctccgtcac cacaaaataa ttcggttgaa
     8641 ctcgctcagt ggaatcgcca ttgcgtaatt ttatcggtaa ggctccggtt agcacttcac
     8701 caatcggggc gtggtaataa cgagccgccc agttcagcag ttgccacatt tctgagtcaa
     8761 aaatcgggct agaatccaac gctgctttaa tcggtttgag tttttcggtt ggcacatcac
     8821 tagtttgcgg gaaatcgacc acaatgccga ttttggtctg gcgaccaaaa ggcacaacca
     8881 cccgcccgcc ttggcaggca ttgaatgccg gcggtagcaa ataatcaaaa taacgatgta
     8941 acggcacatt cagtgccact ctgattaatc tcacttctct aaaccaattt tgattgcaag
     9001 cccgataaat atcgagccgc agattttatt taaccaattt ccaaaggttt gattatgccg
     9061 taaaaaacgc ccaacaggtg cagcggctaa gactaaaata cttacccaaa taatgctggt
     9121 ggataaaaac gttagcccca acagcataaa aggtattttc caaattactg gatacaaact
     9181 gcggcaataa cgccaagaaa aagagcaata ctttcgggtt taatagattg gtaatcaacc
     9241 cttgacggaa tatcttccat agaggaagtt tgtctagatt gattttctct aacaccaacg
     9301 gctctcgcca cattttaatg ccgagatagc agagataaat tgcccctgcg tatttcagaa
     9361 aattaaataa agtgggcgaa tgtgccacaa tgcctgcaag cccgagtgaa accgcaagaa
     9421 tatggcataa aatgcctgct agaatgccga atgaagacat taagcccgac tttttcccct
     9481 cagcaatagt gcgagttaaa atatagatag tatccgaacc cggtgtaaga tttagcagaa
     9541 tacaagcggt caaaaatccc caataattta caatatcact cattattcac actcaattta
     9601 cgtttacgct gctgacgaag agcaaacata ccatctaata ctaaaaatga aatggagatc
     9661 aacaagcaaa tcatcaacaa gtaagattca tttgctaacc tttcgccaat taagaaagac
     9721 accaccaaca tcaatagtgg ctcaacatag cctaataaac caagcaaatt aaagggtaaa
     9781 atcgtgctgg ctagcgtata gctgataagt gcagtgccac taattaaacc cagtaatgca
     9841 ataaaatagt aaatattgag gttttgtgtt tcgacatatt gcatatcggt ttgagagata
     9901 aaataacaag ctacagggag caaatataaa atttctacca caaagctatg taaatggctt
     9961 aagccaaact ttcggcgaag gtaaaaatag attgggtaac ctgtgcaaac aaataaactt
    10021 gctatcgaaa tttttcccgt aaacaaaata ttactcgcta caccaatgaa agcaaccaca
    10081 atcgccaacc atttattcaa ggaaagcgtt tctttataaa ccactttgcc aaatgccacc
    10141 ataataatcg gcattaatag atagcccatt gaaacctcaa tcgcttttcc gctattggga
    10201 gcccataaaa acagccacat ctgcccgccc acaatagatg ccgtgattaa aataaccagc
    10261 aataaataag gctcttgctt t
//
LOCUS       DANMBQ010000090        10147 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.090, whole genome shotgun sequence.
ACCESSION   DANMBQ010000090 DANMBQ010000000
VERSION     DANMBQ010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10147
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.090"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..314)
                     /locus_tag="PXE92_001845"
     CDS             complement(<1..314)
                     /locus_tag="PXE92_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761065.1"
                     /translation="MKNNFGYWLGRKIRAFKEWNHPTFLKYTYIILFLLITYQLRLWL
                     YAVFGAVISLIGIVLLADFMHENNAITQRRNILNELKEIKKLQENDCIKENLTGSHNG
                     TG"
     gene            complement(327..821)
                     /locus_tag="PXE92_001846"
     CDS             complement(327..821)
                     /locus_tag="PXE92_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5761066.1"
                     /translation="MLSGLKIESFSKEFKRDCFDSESELLNQYLKTQVSQDIKRRITS
                     CFLAVNSEQTVVGYYTLASTSLSLSDLPITLQRKLPRYPTVPAVLLGRLAVDKRVKGL
                     GLGQALLGNALKRVLRADIAAYALIVEAKDESAVNFYRKFGFIDFENEARKLFFPLDR
                     VRLS"
     gene            complement(821..1093)
                     /locus_tag="PXE92_001847"
     CDS             complement(821..1093)
                     /locus_tag="PXE92_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HDL5761067.1"
                     /translation="MATATARFEARMSQEVHMLLKRAASLEGRSLSDFVVGAALSAAR
                     KTVEQNDIIRLSVNDQELFAKALIDPPEPNLAMQKALALSSQILGE"
     gene            complement(1252..1680)
                     /locus_tag="PXE92_001848"
     CDS             complement(1252..1680)
                     /locus_tag="PXE92_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761068.1"
                     /translation="MRKLLVITALTLCTTPVFAADKNVIFSCTSTEGKPLTVKRVGND
                     YEYSYDKTTFKNPIKKAVTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKE
                     FIEPGATISQSKEQPSIGSVDCDTRKKSHYKFDVHLMNTL"
     gene            complement(1701..3707)
                     /locus_tag="PXE92_001849"
     CDS             complement(1701..3707)
                     /locus_tag="PXE92_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL5761069.1"
                     /translation="MKSQFKFKKTHLLVITVLFSSTSSISFADSITDKLEFSKSDSII
                     SDRVFYQIGGGTGYMAPPSRGNTKVVDLGIGWKANLTCGNFDIKTTIKNDLNGLKDGF
                     KDLMGNVIDSAKGAVASMPAMILQRANPQLYDLLTNGMYQGKLDFNRLKTSCEEMSKV
                     LADHTLGGKWGQAADLESYKQITSTQPDAKQAQKDLEDKKGKDGRVWVGGQRKGGQNQ
                     DPINVVGDVAKGGFNLLNKRNVLDSSPVSNCEGNLCQTWDTPQAAADFLTKIIGEQSI
                     STCKEDCGTKTSSKAGVGLSPEIEEEHIRTIVKLENVLNMDVPKSELLAELSSSSVPV
                     TRGLIESLRDDPDVELLSQRLSAEIATSKVMEKMLLARRAILAGMREPNVAQNADAQV
                     ELERVLNIIDREISQVKLEMDMQKMITGNTASVILQSKSEREALAGAHSLSQDSLDKR
                     VQGLENGNVALTDLETGSNINLSRRNIALSIPNIPNVAALIPTLPNRGGSGVGGNFPS
                     LAQISGSTMDQATGLLRNFEGFISKAQWDVNAHRVGYGSDTITRADGTVVKVTKDTVI
                     TKEDAERDLARRTAIFANNVRQELGDSHWNALPANAQAVLVSYAYNYGSLAKTKSVLD
                     AARRSAQTGDMTALATAVRNRQVDNNGINARRRNQEADYILGKN"
     gene            complement(3722..4663)
                     /locus_tag="PXE92_001850"
     CDS             complement(3722..4663)
                     /locus_tag="PXE92_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03756 family integrating conjugative element
                     protein"
                     /protein_id="HDL5761070.1"
                     /translation="MKRAFFSVLLSVSLAVPTTLYPQQVKASLNTASIAASSASTSCL
                     DYKVVGTCFWLFCTYFGCKVRTSTKIKHYLPEMVVSSYNQDGQTPWTELQSLNPGVKG
                     GEYRSPQRQYSQLTFKNADAFGHPQGAIGQLLGSTGYYCKSQTTPFIPYFLSGLDFFA
                     WRENMPEMFYPEALIPGMREVGRVGDSWGNIYPRSGWVTQAHDYKASATIVQRVADIV
                     TRTAQPHIYFPAAKKGGVGEWPPGPVEEGQARTHKWQMLYPQMSNTCSVFPNGGQTDT
                     YSSQISNQGDYAWALWRPYSCCKRRGQTFLYSIDWSH"
     gene            complement(4660..5103)
                     /locus_tag="PXE92_001851"
     CDS             complement(4660..5103)
                     /locus_tag="PXE92_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03757 family integrating conjugative element
                     protein"
                     /protein_id="HDL5761071.1"
                     /translation="MKASRFLGYFSIVTVVFSVVAQAQPNIIVYTTKMYPIQNSQLAS
                     QVYYLDQVENFEEEISRNLSKSPEIAEREIRAFFNSADWKAQEEQLKDAYQGVISGWQ
                     NGIKKVPAVFFNNLQSSPSVIYGMTDIQKALDEWHKWVQQHGESK"
     gene            5478..5831
                     /locus_tag="PXE92_001852"
     CDS             5478..5831
                     /locus_tag="PXE92_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761072.1"
                     /translation="MSQQTAGWDVIPFESSKTAKPSLFWKLGNKLGNIFVSAKHKAKS
                     KYVEVTKGINQRIAEEDEMRALELQMCLDEQAAEYEQEISRIKRKMFFRALFVAIIAF
                     LCGMATVFGTQLSLI"
     gene            5903..6148
                     /locus_tag="PXE92_001853"
     CDS             5903..6148
                     /locus_tag="PXE92_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5761073.1"
                     /translation="MSVHIKLSCVGDILPIKLNEWTPEHRALHHEISHKALEAWQNRD
                     KGTQSVRFMQQMPARQGLHFRFLSVSEQDGKLIVSRS"
     gene            6157..6399
                     /locus_tag="PXE92_001854"
     CDS             6157..6399
                     /locus_tag="PXE92_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761074.1"
                     /translation="MFGKLFYKMNPKVLAKIGEDFRKAGYLMGAGFVGMVISNDQIST
                     SEGFVLFLWGLYIWIIGHIALHHSEKILNSKQGEPK"
     gene            6663..7505
                     /locus_tag="PXE92_001855"
     CDS             6663..7505
                     /locus_tag="PXE92_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761075.1"
                     /translation="MSDSVLNTYFKHALVKAGFPDTLDMEYSLSHCQGDGVAFYGRLG
                     TDDLIQLFNHLNPQKRKQKMFANLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMEL
                     YAKTADQLVFFNDSDARRNWYFPTSKVDKYKALWDGFIEDLEQYIKDISREMESVGYQ
                     IIEASPYQTETVFKFNTEKYLVELKRKPSEFYSELVDWAFGDMCDFEAAIEQICQGQL
                     CYADFEATVTDKKSEIQLGLARLSGISYSPNDRSFSGYRQELIGEAIASARHNAARFA
                     YLHA"
     gene            7620..8033
                     /locus_tag="PXE92_001856"
     CDS             7620..8033
                     /locus_tag="PXE92_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5761076.1"
                     /translation="MKNEHNLEQLKYIWDNRNLENKVYQYLFHICIEPMKKGDWNRYT
                     IWLNFHGNLINVSDVVYRVVESQKLKDDIKIWYDKQYYCRPTKVETTGFISIFLHLFY
                     EGIARILLEQGMITETEAAEKSYNFRAANCFQRLL"
     gene            8047..8202
                     /locus_tag="PXE92_001857"
     CDS             8047..8202
                     /locus_tag="PXE92_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761077.1"
                     /translation="MEPRTVKVIYDDGDYFFTLINADEQTIRNYYAIGSSIGFDNTRK
                     IVAVEIL"
     gene            8282..9265
                     /locus_tag="PXE92_001858"
     CDS             8282..9265
                     /locus_tag="PXE92_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL5761078.1"
                     /translation="MNPQSNTQPKFDLYQEVTDKIIAALEQGTAPWLKPWDSVIPYGG
                     MPCNAISGRLYSGINVLLLWLSAAEHGYIQRKWITAKAAIEAGGHVRKGEKATLAVSY
                     RPYDREKTDDDGNLVLDDDGNPVIEHLASIKKHCLFNIEQCEKLPQDWYETVETPEQL
                     TDENQYAIFEEIRLMLKGMDLQVMVKPSNQAYYHPRNDHIVMPEMKQFHSPQKFHSVL
                     LHEMTHATGHQSRLARDGIVSGKARFGNKVYAFEELVAEMGCAFLCSHLGFADVPQNA
                     SYIESWIKVLREDKRAIFRASGKAREACQYMLDALNIAQLADKYEVFEEAA"
     gene            9355..9597
                     /locus_tag="PXE92_001859"
     CDS             9355..9597
                     /locus_tag="PXE92_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761079.1"
                     /translation="MLNLNLFKRPIEISTLESWSKFCDDVGKVAFVAVPAMLYSNYEF
                     WIKISSIIGLFIATYFCLVIGRNIRQFIEKEKSKWD"
BASE COUNT         2965 a         2038 c         1961 g         3183 t
ORIGIN      
        1 ttaccagtac cattatggga tcctgttaaa ttttctttaa tacagtcgtt ttcttgtaat
       61 tttttgattt ctttaagttc attaagtata ttacgtcttt gtgttattgc gttattctca
      121 tgcataaaat cagctaacag aacaatacca attaaggata taactgctcc gaatacagca
      181 tataaccata gccttagctg ataagttatt aggagaaata atataatata tgtatatttg
      241 agaaaagtgg gatgattcca ttctttaaaa gctcgaattt tcctgcctaa ccaataacca
      301 aaattatttt tcataatcac tctccattaa gataatctca ccctatctag tggaaaaaat
      361 aatttcctag cctcattttc aaagtcaata aatccaaatt tacgataaaa attgaccgca
      421 ctttcatctt ttgcctcaac aattaatgcg taagctgcta tatctgcacg aagtaccctt
      481 ttaagtgcat tacctaatag agcttgccct aaccctaatc cctttacacg cttatctact
      541 gctaatcgac caagtaggac ggcaggtacc gtaggatatc ttggtaattt cctctgtaat
      601 gtaattggta aatcagataa tgaaagactt gttgaagcca gtgtgtaata tcctactact
      661 gtctgttcag aattaacagc taaaaaacaa gaagtaatac gtcttttaat atcttgtgaa
      721 acctgagttt tgagatattg atttaataat tcagattcac tatcaaaaca atctcgttta
      781 aattccttgc taaatgactc tattttcaat cccgaaagca ttattccccc agaatctgtg
      841 agcttaatgc caaggctttt tgcattgcca aattaggttc aggaggatca atcaatgctt
      901 tagcaaaaag ttcttggtca ttcacagata atcgaataat atcattttgc tcaactgttt
      961 ttcttgctgc agatagtgca gctccaacaa caaaatcact aagactacgc ccttcaagag
     1021 aagcggctcg ttttaacagc atatgaactt cttggctcat tctagcttca aatcgtgcgg
     1081 ttgcagttgc catatatttt ctccttgaat tatttagttt taattgtacg tatttatacc
     1141 gtacaaatca agcatgacaa taaaaaaatc ccttagattt tcaaacctaa gggatttacc
     1201 taccgatctt tgtgtttttt aacgtgggct ggccctagtg ccatacaggc attataaagt
     1261 attcatcaaa tgaacatcaa acttataatg gcttttttta cgagtatcac aatcaacaga
     1321 gccgatactt ggttgttctt tactttggct aatcgttgct cccggctcaa taaattcttt
     1381 tgcattgcca tttggctgaa caaagccgac caaatacttc aatccatcat tttccagctc
     1441 taatgcatac gttgtaaaac ctgaacctct ggcgataatt gagccgtcat tagtgactgc
     1501 ctttttaatc ggatttttga aggttgtttt gtcatacgaa tattcgtaat catttcctac
     1561 ccgtttaaca gtaagcggtt ttccctccgt gctggtacag gaaaatatta cgtttttatc
     1621 tgctgcaaat actggggtcg tgcagagtgt aagagcagta attactaata atttacgcat
     1681 aaatgtaact ccttataagg ttaattttta ccaagaatat aatcagcttc ctgattccgg
     1741 cggcgtgcat tgataccgtt attatcaacc tggcgatttc tgacagcagt tgccaaagca
     1801 gtcatatcac cagtttgagc tgatcgtcta gctgcgtcaa gcacactttt tgttttcgct
     1861 agtgagccgt aattatatgc ataagacacc aaaacagcct gagcgttcgc cggtaatgca
     1921 ttccaatgtg aatcacctaa ctcttgtctc acattgttcg caaagatagc agttctgcga
     1981 gctaaatcac gttcagcatc ttctttggta atcacagtat ccttggtcac tttaactacg
     2041 gtaccgtctg cccgtgtaat cgtatcggaa ccatatccta cacgatgggc attcacatcc
     2101 cattgagcct tggagataaa gccttcaaaa ttacgcagta accctgttgc ctgatccatc
     2161 gttgaaccgc tgatttgtgc aagtgatggg aaatttccgc ctacacctga accacctcta
     2221 tttggtagag tcgggatgag agctgctaca ttcggaatat ttgggatact caatgcaata
     2281 tttctacgag agaggttaat attagagcct gtctctaaat cagttaatgc aacattaccg
     2341 ttttcaagtc cttgaacacg cttatccaga ctatcttggg ataaactatg agcaccagca
     2401 agagcttccc gttcggattt actttgcaga atcaccgaag ccgtattgcc ggtgatcatt
     2461 ttttgcatat ccatttccag ttttacttgg gaaatttcac ggtcaataat attgagtact
     2521 ctttccagtt ctacttgagc atccgcattt tgagcaacat tcggctctcg cataccagct
     2581 aggattgctc ggcgagccag tagcattttt tccattactt tactggtcgc aatttcagcg
     2641 gataaacgtt ggctgagaag ttcaacatct ggatcatcac ggaggctttc aatcaagcca
     2701 cgagtgacag gtacactact tgagcttaat tcagctaata gctcggattt cggcacatcc
     2761 atattcagta cattttctaa tttaacaatt gtacgaatat gttcttcttc aatttccgga
     2821 cttaaaccaa caccggcttt cgaactggtt ttagtaccac aatcctcctt acaggttgaa
     2881 attgattgct caccaataat cttagttaag aagtcggcag cagcttgagg tgtatcccaa
     2941 gtctgacaaa gattaccttc acaatttgaa accgggctgc tatctaagac attccgctta
     3001 ttgagtaaat taaatccgcc tttcgctaca tcaccaacga cattaattgg atcttggttt
     3061 tgcccacctt tacgttgccc accaacccaa actctcccat ctttcccttt tttatcttct
     3121 aggtcttttt gggcttgctt cgcatcaggt tgtgtcgagg taatttgctt atagctctct
     3181 aaatctgctg cttgccccca ttttcctcct agtgtgtgat ctgccagaac tttagacatt
     3241 tcctcacagg aagtttttag acggttgaaa tccagcttac cttggtacat accatttgtc
     3301 agcaaatcgt agagttgagg gttggcccgt tgcaatatca ttgcaggcat actggcaacc
     3361 gcacctttag ctgaatcaat gacattcccc attaaatctt taaagccatc tttaaggccg
     3421 tttaaatcat ttttaatagt tgttttaatg tcaaaattgc cacaggttaa attcgctttc
     3481 caaccgatgc ctaaatcaac gactttggta ttaccacgac taggtggagc catataacct
     3541 gttcctccgc cgatttggta aaagacacga tctgaaataa tcgaatccga cttactaaat
     3601 tccagtttat cagtgattga gtcagcaaaa gagatagagg aagtactgga aaaaagtact
     3661 gttattacta atagatgtgt tttcttgaat ttaaattgtg atttcattgc aagacctcgt
     3721 tttagtgtga ccaatcaata ctgtaaagga atgtttgccc tcggcgttta caacaactat
     3781 aaggtcgcca tagtgcccaa gcataatcac cttgatttga aatctgagag gaataggtgt
     3841 ctgtttgccc cccatttgga aaaacagagc aggtatttga catttgagga taaagcattt
     3901 gccatttatg tgttctggct tgtccttctt cgacaggtcc tggtggccat tctccaacac
     3961 cacctttttt cgctgccggg aaataaatat gtggttgagc agttcgggtc acgatgtctg
     4021 caactctctg cacaatggtt gcagaggctt tataatcgtg agcttgtgtt acccaaccgg
     4081 aacgtgggta aatatttccc cagctatcgc ctacacggcc aacttcccgc attcccggaa
     4141 tcagagcttc cggataaaac atttccggca tattttcacg ccaagcaaag aaatctaatc
     4201 cacttagaaa atagggtata aatggtgtgg tttgactttt acaatagtag cctgtacttc
     4261 ctaataactg accaattgct ccttggggat gcccgaaagc atctgcattt ttgaaggtta
     4321 gttgagagta ttgacgttgc ggagaacgat attctccgcc ttttacgcca ggattgagag
     4381 attgtaattc tgtccacgga gtttgcccat cctggttata agatgaaacg accatttccg
     4441 gtaaataatg cttaattttg gttgatgtac gaaccttgca tccaaagtag gtgcaaaata
     4501 accagaagca cgttccgacg actttatagt ctaaacagct tgttgaggca cttgatgcag
     4561 caatcgacgc cgtattcaat gatgctttta cctgttgagg atataaggtt gttggtactg
     4621 ctaaacttac agagagaagt accgaaaaaa acgctctttt cattttgatt caccgtgttg
     4681 ttgaacccat ttatgccatt catctagtgc tttttgtata tcagtcatac cataaatcac
     4741 gctcggagag gattgcagat tattaaaaaa caccgcaggc acttttttaa ttccattttg
     4801 ccatccactg atcacccctt gataagcatc ttttaattgc tcttcttggg ctttccaatc
     4861 tgctgaatta aagaatgctc gtatttctcg ttcggcaatc tcgggggatt tactgagatt
     4921 tcgactgatt tcctcttcaa aattctctac ttgatcaaga taataaactt gggaggcaag
     4981 ttgtgaattt tgaatggggt acatctttgt tgtatagaca atgatattcg gctgtgcttg
     5041 tgccactaca gaaaacacta ctgttactat gctgaaatat cctagaaatc tacttgcttt
     5101 catcactctc tttccgaata aataagcaga aaattagcga gatttttaca tagaggatag
     5161 gaaaaactct tttcaaaaaa gagatatttt tttgagcaaa aaatggttga ttttataaat
     5221 ggatttcgta tgatatggaa tattaagatg ctgtggaaac agcccttaaa agtcgcataa
     5281 ctcttgagaa gcggcggcta tccatcgagg tagttgagtt atttacccaa aatgtctccc
     5341 agcattctga aagggaacgc tgcaaatttg caggaatgcc acctaaacac ctaccttccg
     5401 agggatattt caattccctt ggaattgcga tctcctgagg aattttattt atttaacttt
     5461 ttataggaga actcgctatg agtcaacaaa ccgcaggatg ggatgtgatc ccatttgaat
     5521 cgtcaaaaac cgcaaaacct tctctttttt ggaaacttgg caataagctc ggtaatattt
     5581 tcgtttcggc gaaacataaa gctaaaagca aatatgtcga ggtaaccaaa ggcatcaatc
     5641 aacgaattgc tgaagaagat gaaatgcgag ccttagaatt gcaaatgtgc ttagatgagc
     5701 aagcagctga atatgagcag gaaatttctc gcattaagcg taagatgttt ttcagggctt
     5761 tattcgttgc gattattgcc tttttatgtg gtatggctac cgtttttggt actcagctct
     5821 ctttaatcta atttaactca cccatcgggg aaatgctatt tcccttgtgg taatacattt
     5881 ccccttaatt ttggagaaat gtatgtcagt tcatatcaaa ctctcctgtg ttggagatat
     5941 tttgccaatc aaactcaatg aatggacacc ggaacatcga gccttacatc acgaaattag
     6001 ccataaagct ctcgaagcct ggcaaaatcg agataaaggc actcaaagcg tgcgatttat
     6061 gcaacaaatg ccagcccgac aaggactgca tttccgcttt ctgagtgtat cggagcaaga
     6121 cggcaagctc attgtcagtc gttcatagtt ggttcaatgt ttggtaagct tttttacaaa
     6181 atgaatccca aagtactagc taaaatcgga gaagatttta gaaaagctgg ttatcttatg
     6241 ggagctggtt ttgtcggaat ggtaatttcc aatgatcaga tttccacatc ggaaggattt
     6301 gttctttttt tgtggggatt gtatatttgg attatcgggc atatcgcact acatcattct
     6361 gagaaaatac ttaattcaaa gcaaggagaa ccgaaatgag tccgtacttt ttaggtgctg
     6421 ctattggaac agcgttattg gcaacaattt ttattgttct agtaacttgg gcaaatcgag
     6481 atattttgtt tacaaaatca gataagccac agtctaaata gcaaaactcc attctaaccc
     6541 ataggggaac aagttccccg aggagcttgt tctccgtttt accttccttt taccctatcg
     6601 ggaaatactt tcccgaattg ggcttaagtg tttcccatta ttttttattt tggagaaaca
     6661 ttatgtcaga ttcagtatta aacacttatt ttaaacacgc tcttgtcaaa gctggttttc
     6721 cggatacctt agatatggag tattcactca gccattgtca aggagatgga gtcgcatttt
     6781 atggtcggct tggtacagat gatctaatcc agcttttcaa tcatctcaat ccacagaaac
     6841 gtaaacagaa aatgtttgct aatttgctaa cgcacattga atcttgggaa acccacgatg
     6901 atattggttt tgaaattata cgaaatcgct ttgggtatcg ttactcgcat tggaatacga
     6961 tggagcttta tgctaaaact gcagatcagt tagtgttttt caatgatagt gatgctcgaa
     7021 gaaactggta ttttcctact tcaaaagtgg ataaatacaa agcattgtgg gacggattta
     7081 tcgaagattt ggagcagtac atcaaagata tttcccgtga aatggaatcg gtcggttatc
     7141 aaattattga agcctcgccg tatcaaacgg aaaccgtttt caaatttaat acggaaaaat
     7201 atctagtaga actgaaacgt aaaccttctg agttttattc agagcttgtt gattgggcat
     7261 ttggtgatat gtgtgatttt gaagcagcta tagagcagat ttgtcaaggg caactctgtt
     7321 atgctgattt tgaagcaact gttaccgata agaaaagtga aattcagtta ggtcttgctc
     7381 gcttgagtgg aataagttac tcgccgaatg accgttcgtt tagtggttat cgacaagagc
     7441 ttattggtga ggcgattgcc tctgctcgcc ataatgcagc acgttttgcc tacttgcacg
     7501 cctaatttgc agatttttac tttaatttga ccgcttgtag tggttaattt tcaccccgtg
     7561 gggaaatatt ttccctattg ggcaaaatgt ttctccactt tttaatttgg agaaatgtta
     7621 tgaaaaatga acacaattta gagcaactta aatatatttg ggataaccgc aaccttgaaa
     7681 ataaagtcta tcaatatctg tttcacatct gcattgagcc gatgaaaaaa ggagattgga
     7741 atcgttatac gatttggctt aattttcacg gtaacttaat caacgtgtca gacgttgtat
     7801 atcgagttgt ggaatctcaa aagctcaaag atgacatcaa aatttggtat gacaagcaat
     7861 actattgccg tccaaccaaa gttgaaacaa caggttttat ttccattttt ctgcacctgt
     7921 tttatgaggg catagctcgt attttgctgg aacagggaat gattactgaa actgaagcag
     7981 ccgagaaaag ttacaacttc agagctgcaa attgttttca acgtttgctt taatggaggt
     8041 gagataatgg aacctcgcac tgttaaagtt atttacgatg atggcgatta tttctttacc
     8101 ctaatcaatg ccgatgaaca gactattcgt aattactacg ctataggcag ttcaatcggt
     8161 tttgataaca caaggaaaat tgtcgctgtt gaaattttat aaactaccca tcggggaaac
     8221 gacttcccca tagggcgata gtgtttcccc atttttctac ccgaactttg gagaaacact
     8281 tatgaaccct caatcaaaca cacagcctaa atttgattta tatcaagaag tgaccgataa
     8341 aatcatcgcc gctttagagc aaggaacggc tccttggctt aaaccttggg atagcgttat
     8401 tccttatggt ggtatgccgt gtaatgccat atccggaaga ttgtattccg gaatcaatgt
     8461 tttgttactt tggttgtctg ccgcagaaca cggctatatc caacgcaagt ggatcactgc
     8521 aaaagcagct attgaagccg gtggacacgt tcggaaaggt gaaaaagcaa cccttgcggt
     8581 cagctatcgc ccgtatgatc gagaaaaaac cgatgatgat ggcaaccttg tcctcgatga
     8641 cgatggtaac ccggtaatcg aacatctcgc ttcgattaaa aagcactgcc tattcaatat
     8701 tgaacagtgc gaaaaactgc cacaggactg gtatgaaacg gttgaaaccc cagaacagct
     8761 gactgacgaa aatcagtatg ctatttttga ggagattcgt ttgatgttga aaggtatgga
     8821 tttgcaagtg atggtaaaac caagcaatca agcttactac cacccacgca atgaccatat
     8881 cgtgatgccg gaaatgaagc agtttcattc accacaaaaa ttccatagcg tgctgctaca
     8941 tgaaatgact cacgcaacag ggcatcaatc tcgccttgct cgtgatggta ttgtttccgg
     9001 aaaagctcgc tttggcaata aagtttatgc ttttgaagaa ttggtcgctg aaatgggctg
     9061 tgcattcttg tgttctcacc taggctttgc tgacgtgcca caaaatgcca gctacattga
     9121 aagttggatc aaggtgttaa gagaggataa acgggcaatt ttcagggctt cagggaaagc
     9181 tcgggaagcc tgtcaatata tgctggatgc cttaaacatc gcacagctgg ctgataaata
     9241 cgaagtattt gaagaagccg cttaataaat ttgccgaaag gcatttcccg tggggagata
     9301 ctctcccttc ggggcattgt gtctcccttt ttattcactt aacgagagga ctcaatgctc
     9361 aatctaaact tatttaaacg acccattgaa atttcgacac ttgaatcttg gtcaaaattc
     9421 tgtgatgatg ttggtaaagt agcttttgtt gcagtacctg ctatgctgta tagtaattac
     9481 gagttttgga ttaagataag cagtataatt ggtctattta tagctaccta tttctgttta
     9541 gttatcggta gaaatatacg ccaatttatt gagaaggaga aatcaaaatg ggattaatga
     9601 tcggcatttg gattattgct tttattgcat ttgggttggc catatggaca agccatattc
     9661 taaaaaagca agatgaacgc cttaaacagc taaaaaatag ctaactttca aaatacggca
     9721 cattttgtgc cgtatttctt ttgtactggt ggcaaatata agattactat catcagtata
     9781 ttgtaatatc tcaactcaac agcattagtc aaaaatcctc caacatattc agagagtttt
     9841 tcctactgag ttctcttatt ttttggttca atactctccc tttataaatt aaatttggtt
     9901 cagataaaag ccgctcaatg gcaaaaggat aaaggagccc ttacgggcaa gggtaatccc
     9961 ctaaggggga ataagggtaa cctttccaag gggaaaggtc ttacccaaaa gggcaaaggg
    10021 ctaaacggct ttctttcaac gcaaacatca tctttttcgg tctatttcaa tgcactcaat
    10081 tctcaaaaaa attcttggca aaagtaaatc ctcgtctcaa agttcggtta aatctgacaa
    10141 tgttttc
//
LOCUS       DANMBQ010000091         9885 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.091, whole genome shotgun sequence.
ACCESSION   DANMBQ010000091 DANMBQ010000000
VERSION     DANMBQ010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9885
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.091"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            191..1897
                     /locus_tag="PXE92_001860"
     CDS             191..1897
                     /locus_tag="PXE92_001860"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HDL5761080.1"
                     /translation="MNTSSFNRTWAKVILSALMRYGVKHFCIAPGSRSTPLTLAAVQL
                     QQTQYAECHTHFDERGLGFYALGIAKATDSPVAIIVTSGTAVANLYPAVIEASLSHQK
                     LIILSADRPTELIGCGVNQAIHQQGIFANYPVASVNLPKANEAYHASWLVSTIEQACT
                     TQAQQGGVLHINVPFEEPLYEADINEILNTPWLRPIQGWLNNAQTKWIDQQAIQSEVS
                     MHENWDYWRTKRGVIVVGKLPPEQGTGLKTWAETMGWCLLSDVQSCIEASLPYADIWL
                     SNETVKQRLLQADIVIQFGTQIVSKRVNEFLKAFQGEYWVVEQSHDYHNPNAHHQTRF
                     IAKAHHFLRVHPPLRQKPWLLEPLALSQFCSTFIEQQVGGSLSEASLAHNIQDVLAIN
                     GNLFIGNSLFVRLVDALCKLPEGYPVYTNRGASGIDGLIATMAGIAKGSDRPTVGVVG
                     DISALHDLNSIALLTKINQPTILFVVNNSGGALFDMLPVDSKAKDQYYRLAHNFEFAQ
                     VATMFGLEYIRPFTWADLKTKLKHAYARKGVTIVEIKVNEHDGSNMYKSLLKQISQAE
                     IA"
     gene            1946..2785
                     /gene="menH"
                     /locus_tag="PXE92_001861"
     CDS             1946..2785
                     /gene="menH"
                     /locus_tag="PXE92_001861"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HDL5761081.1"
                     /translation="MLSYQWHAQQGTPVVFLHGLLGSQQDWQAVLQHLQNFPQIRPLT
                     IDLPFHGNSKHITCADFANLRQQLHATLESLIGSRPFYLVGYSLGGRAALDYVLNMEN
                     PNLQGVVLEGANIGLSTENDRQIRRQNDRHWANRFRQEPIEQVLEDWYKQPVFADLSD
                     TERECYIDSRKHNQGEQIAQMLEATSLAKQPDYTEKLKQTDKNIVFFIGEKDQKFRKM
                     ASSHQLPTQLIANAGHNAHRANAKNFVEKLGLLILHSDSDLRSQSVKHNGAALLHKSP
                     SGA"
     gene            complement(2834..3511)
                     /locus_tag="PXE92_001862"
                     /pseudo
     CDS             complement(2834..3511)
                     /locus_tag="PXE92_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251475.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            3597..4259
                     /locus_tag="PXE92_001863"
     CDS             3597..4259
                     /locus_tag="PXE92_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heteromeric transposase endonuclease subunit
                     TnsA"
                     /protein_id="HDL5761082.1"
                     /translation="MRKTHSFQQVRKIKPTWMSVSGHIPFRNGVSIPYESTLERDFLM
                     YFTYLPSVDEVVSQPTTLPFVKNGITYTYTPDFFLSFTDGRKPMLIEVKPKAKWQKHW
                     KEWKEKWKAAIRFCQENGYVFHVYDEDRIRHLALFNLNYVQRYKRIQHEQEDIDAILA
                     QVKLMGNTTIDYLLSRFFAGSLYRMKGLQIIYHLLATKQLHCNWFLPLNEFTEVWGNN
                     DE"
     gene            4249..6177
                     /locus_tag="PXE92_001864"
     CDS             4249..6177
                     /locus_tag="PXE92_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HDL5761083.1"
                     /translation="MMSNSGFTEKRYHHRLDRGRIILQKGNIYLNREDGEQYELVDYM
                     DEPSQLLVRNLNTRTTKVVSIHQLENFKMNERTDLSVDVTAISNEYWEKAQQKYEAIK
                     PLLGMDQHRPYAVKARAEDVGVNPRTLYRWLQAYNSIGSIAGLVDQKRGWQQGNSRLT
                     PEQDKLIVQVINEFYLHKQRPTTEQTIREIRRRCKIEKVESPSKETIRMRILHISEEE
                     RLRKRGQREKARNKFKPKPNSFPDADYPLSVVQIDHTPVDLIIVDSKYRKPIGRPFLT
                     VAIDIYSRMIVGYYLSLDAPSVTSVAMCIARGILPKERLLLDLGLQGSEWNAFGYPVK
                     VHVDNGPDFQALDLSKSCSAHGIHLEFRPMGRPEYGGHIERVIGTFMKEVHSLAGTTF
                     SNIKERDSYDSEKEAIMTLDEFEKWLVHYIVNVYHKRVHSALGISPEQKWKIGIFGDE
                     NEVGCGYPQLPVDEQTLLLDFLPSITRTIQHNGVTIDGLRYYDVALNMYISDSDESGK
                     SKEFLFRRDPRNISKIWFYDPKLKRYFPIPFANQAMPEMSIWEYREVRSRIANKGDKY
                     INEQQVLDGLTEMREMVAESAQRTKKARRQAERQKMHKASKPIIETKVETKAVVPVVV
                     TSNLLALDDESLSFGEVD"
     gene            6177..7064
                     /locus_tag="PXE92_001865"
     CDS             6177..7064
                     /locus_tag="PXE92_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniB family NTP-binding protein"
                     /protein_id="HDL5761084.1"
                     /translation="MQYEHVHEKFRHLVTADNQERIAFLDEPRWLGYGVAKDIMDNLV
                     SLMNKPKRPRMLNLLIVGDSNNGKTTLIRRFFDLYGQAYIDSDSNAIYPILLAEAPPS
                     ANEKELYISLLERFYVPYKPTDTIAKLRYQTIHLFREFRVKMLVIDEFHSLLVGTPRL
                     QRQVMNAIKMLCNELQIPIVGVGTRDAIRVLHTDRQHASRFDVAELPIWKLDKEFQKL
                     LFQFQGILPLRESSNLQSPELATKIHTISGGNLGNVHRLLTACAVQAITSGTEKITLD
                     IIEKNSWVQPTNGYRKIIG"
     gene            7022..8128
                     /locus_tag="PXE92_001866"
     CDS             7022..8128
                     /locus_tag="PXE92_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniQ family protein"
                     /protein_id="HDL5761085.1"
                     /translation="MGTTNKRLSQNNRIKKGVIHTPIYSNESISSWLIRASFDCGTDP
                     LTFTGFYWEKHRLWTLDLDRGLENIEPTIYDDVQALSGKIQLSEYSLFRRLYPINADE
                     TLAKGQVRWVIPRSARNRTHHIGQQYCPLCLDESPHLRNDWRLAWNFGCLKHNMMLAN
                     RCFCCGTLYQPHLLSAEKRHLNHCHQCGGKLEQGTMEMSLAEKLTLQGINQVLEKDSG
                     ICFGYKVSGKVWFDMLRYCINLLRRASDRPNHALAKFVVNLQIDVENICSPKTGLSFE
                     QLPLGERTNLLVNAYHILGMEADSIRSAIYLCGGTQKTFMFEKYPDFWQEFMALAPAG
                     PNRTRKRTKPQNESITAINRRWERLKRKLHLNNE"
     gene            8125..9549
                     /locus_tag="PXE92_001867"
     CDS             8125..9549
                     /locus_tag="PXE92_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761086.1"
                     /translation="MKINVIKPQEEPCSACGKISRIWRRYNGEGYCANCYAKWFPKKE
                     CSCCHQPKRIYLSSTVCWDCEKQTDCVRCGKAAGTFKIGKITRYGAVCNVCSRYFREE
                     RECFECGQLSRTMLRASESGHSELLCLKCFQKYRFATCKNCRRYRKVHDRDNQLCRKC
                     SEQRTSQCPKCKQDMPAGYGNICADCSRRTLLFNLIRMNVHLFRHKKVKRAYKKFIFW
                     YLAKCGVSVVLKKSDDHVLFFMRCDENWGNIPDYRELVTFFKPNGLRTHLTVLRWLLD
                     TNQVKVDESLKEEMAGLERIQSLFNKLSNSVPCIANYYTQLQHKYEAGKTSLKSVRLA
                     LQPAIDFISSESVSLLPTQVQLNSYLVAKTGQIAAITGFINHLNREYHCELEIDRSLI
                     QKMKEKQLKQQAKQRLAILYKQEKLSIKEQNELLSVVLLNLHNIWIKSPKKLSISEID
                     GIAYYVDNEKKYFIPKDIHIRLME"
     gene            9664..9870
                     /locus_tag="PXE92_001868"
     CDS             9664..9870
                     /locus_tag="PXE92_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA delta(2)-isopentenylpyrophosphate
                     transferase"
                     /protein_id="HDL5761087.1"
                     /translation="MTLKAQFREWLKKEQEHDEMIGFAHIPCILSKVDSKLAIVSGNA
                     YEKKYLRYWIKCFRFDRNISKYIK"
BASE COUNT         3058 a         1992 c         2129 g         2706 t
ORIGIN      
        1 aaatacgttt cttcgtaaat gctcttaaaa aagagagagt ttactaagta aagtgttgct
       61 caatagatag aaattttcac gaagttttac aaaaacattc caattttctc ctaaaaaact
      121 tcccacaata atttcacttt ttgctacaat cctaaccatt tatcgaattt atcaatcagt
      181 agagaagaat atgaatacca gttcttttaa tcgcacttgg gcaaaagtga ttttaagtgc
      241 attaatgcgt tatggcgtaa aacatttttg tattgctccg ggttctcgct caacaccgct
      301 cacattagcg gcagtgcaac ttcaacaaac gcaatatgca gagtgccaca ctcattttga
      361 tgagcgtggt ttaggttttt atgcgttagg gattgctaaa gcaaccgaca gcccggttgc
      421 tattattgtc acttccggca cagcagtagc gaacctttat cctgcggtga tagaggcaag
      481 cctgagccac caaaaactga ttattctttc tgccgaccgc ccaaccgaat taatcggctg
      541 tggggtaaac caagccattc atcagcaagg tatttttgcc aattacccgg ttgccagtgt
      601 caatctaccg aaagcgaacg aggcttacca cgcaagctgg ctggtttcga ccattgagca
      661 agcctgcact acccaagcac aacaaggcgg tgtgttgcat atcaatgtgc cttttgaaga
      721 gccgctttac gaagcagaca ttaatgaaat tctaaataca ccttggttac gcccaatcca
      781 aggctggttg aataacgctc aaaccaaatg gatagaccaa caagcgattc aaagcgaagt
      841 ctcaatgcac gaaaattggg attactggcg aactaaacga ggggtgattg tggtcggcaa
      901 actgccgccg gaacaaggca caggtttaaa aacttgggcg gaaaccatgg gttggtgctt
      961 gctaagtgat gtgcaatctt gcattgaagc cagcctgccg tatgccgata tttggctctc
     1021 caacgagact gtcaaacagc gtttattgca agcggatatc gtgattcaat tcggcacgca
     1081 aattgtcagc aaacgggtga atgaattttt aaaagcattc caaggggaat attgggtggt
     1141 ggaacaatcg cacgattacc ataatccaaa cgctcatcat caaacccgtt ttattgccaa
     1201 agcacatcac tttttgcggg tacacccacc acttcgccaa aagccatggt tgcttgagcc
     1261 attggcatta tcgcaattct gctccacttt catagagcaa caagtgggtg gcagcttaag
     1321 tgaagcctca cttgcacaca acattcaaga tgttttagca attaatggca acttatttat
     1381 cggcaatagc ttatttgttc gattggttga tgctctgtgc aaactgccgg aaggctaccc
     1441 tgtttacacc aaccgtggtg caagcggtat tgatggctta atcgcaacaa tggcaggcat
     1501 tgcaaaaggt agcgaccgcc cgactgtcgg tgtggtaggt gatatttccg cattacacga
     1561 tcttaactca attgcattgc tcaccaaaat taaccagccg accattttat ttgtggtgaa
     1621 taacagcggt ggtgcgttgt ttgatatgtt gcctgttgat agcaaagcga aagatcaata
     1681 ttaccgcctt gctcacaact ttgaatttgc tcaagtcgcc acaatgttcg ggcttgaata
     1741 tatccgcccg tttacttggg cagatctaaa aaccaaactc aaacacgcct atgctcgtaa
     1801 aggtgttacc attgtggaaa tcaaagtaaa tgaacacgac ggcagcaata tgtataaatc
     1861 attgctaaaa caaatttcac aggcggaaat tgcctaatca caactgcccc tcgccaatcc
     1921 tgcgaggggt aaaaatgtat cgactatgct ttcctatcaa tggcacgctc aacaaggcac
     1981 acccgtggtt ttccttcacg gcttgctcgg ctcacaacaa gactggcaag ctgttctcca
     2041 acatttgcaa aattttccgc aaattcgacc gcttaccatt gaccttcctt ttcacggaaa
     2101 tagtaagcac attacctgtg ccgattttgc caacctgcga caacaactac acgccaccct
     2161 tgaaagccta atcggctcac gacctttcta tttagtcggc tactcactcg gtggacgagc
     2221 ggcactcgat tatgtgttaa atatggagaa tccgaatctg cagggcgtgg tgttagaagg
     2281 ggcgaatatc ggcttaagca cagaaaacga ccgccagatt cgccggcaaa atgaccgcca
     2341 ttgggcaaac cgtttccgtc aagaacccat cgaacaagtg cttgaagatt ggtacaaaca
     2401 gcctgttttt gcggatttaa gcgatacgga aagagaatgt tatattgata gcagaaagca
     2461 caatcaagga gagcaaattg ctcaaatgct ggaagccacc agcctcgcca aacagcctga
     2521 ctacaccgaa aaactcaagc agacggataa gaatattgtc ttttttatcg gtgaaaagga
     2581 tcagaaattt cgcaaaatgg catcaagcca ccaactacca acacaactga ttgctaatgc
     2641 agggcataac gctcatcggg ctaatgctaa aaattttgtg gagaaattgg ggttattgat
     2701 actccactcc gacagcgacc tacggtcgca atcggttaag cataacggtg cagctctgct
     2761 gcacaaaagc cccagtgggg cttaatcagc cgtaggctaa atataaccta gtacggctca
     2821 gccgtgctag gtgttagggc tccccctgca accgttgcaa taagcgatcc atcgcccgat
     2881 aaccaagtgc ttccgctaaa tgcagttgtt gaatattcgc ctcgccggct aaatcagcaa
     2941 tagtccgaga aactttcaaa atacggtggt aggctcgtac cgataaaccg agctttgtca
     3001 atgcagtttc taaaaatagg gcatcttgtg ccgataattg gcaatctcgc tcaatttctc
     3061 gggtggtgag ttgagaattg attttacctg ctcgctcaaa ttgcattttt ctggctaaaa
     3121 acactcgctt gcgaacctgc tcggtggtct ctcctcgatt ctccgtccca ctttgcaatg
     3181 ctccttgtgg caaaagtggc acttctatag agagatcgaa acggtctaag aaaggtccgg
     3241 aaaggcggtt taaataccgc attacctgtt ggggcgaagt gcggttatgc gtgccttgat
     3301 aatgccctgt cgggcttggg ttcatcgctg caattaattg aaagcgtgcc ggaaattgta
     3361 ctttagcgtt ggctcgggaa atcacaattt cgcctgcctc caacggctga cgtaacgcat
     3421 caagcacttt acgttcaaat tcaggcaatt catctaagaa cagcacaccg ttatgggcaa
     3481 gtgaaatttc ccccggtttg gggatcgagc cactgtaaaa actagaaata aatgtcataa
     3541 aaactagaaa tagctgtcag attatttaga aaacaagaaa taggtgtcaa attattatga
     3601 gaaaaacaca tagttttcaa caggttagaa aaattaaacc cacttggatg agtgtatcgg
     3661 ggcatattcc atttagaaac ggagtcagta ttccctatga atcgacttta gagcgtgatt
     3721 ttttgatgta tttcacttat ctaccttcag tagatgaagt cgtctctcaa ccgactaccc
     3781 tacctttcgt caagaatggg atcacttata cctatacacc agatttcttc ttgtcattta
     3841 cagacggtcg aaagccgatg ttaatcgagg tcaaaccgaa agcaaaatgg cagaagcact
     3901 ggaaagaatg gaaagaaaaa tggaaagctg caatacgttt ttgccaagaa aacggttatg
     3961 tattccatgt gtatgatgaa gatcggattc gacatctagc gcttttcaat ctcaactatg
     4021 ttcagcgcta taagcgaata caacatgaac aagaagatat agatgctatt ctagcccaag
     4081 taaagctgat gggaaatacc actattgact atttactctc tcgatttttt gcaggttctc
     4141 tatatcgcat gaaaggccta caaatcatct atcacttact ggcaacgaaa caactacatt
     4201 gcaattggtt tctaccactt aatgaattta ccgaggtatg ggggaataat gatgagtaac
     4261 tctggattta cagaaaagcg ctatcatcac cgattagatc ggggacgtat tattttgcaa
     4321 aaaggtaata tttacctaaa tagagaagat ggagaacagt atgaattggt tgattatatg
     4381 gatgaaccct cccaactgct cgtacgaaat ctcaacactc gtacaaccaa agtcgtcagt
     4441 attcatcagc ttgaaaattt caaaatgaac gagcgaacgg atctttctgt ggatgtaacc
     4501 gctattagta atgaatattg ggagaaagcc caacaaaaat atgaggcaat taaaccgtta
     4561 ttagggatgg atcaacatcg gccttacgca gttaaggctc gtgcagaaga tgttggggtg
     4621 aaccctcgta cattataccg ttggttacaa gcctataatt ccataggatc tatcgcaggt
     4681 ttagtcgatc aaaaacgtgg atggcaacaa ggaaattccc gtttaacgcc agagcaagac
     4741 aagctgatcg tgcaggtaat caatgagttt tacctacata aacaacgccc aactactgag
     4801 caaactatta gagaaattcg ccgccgatgc aaaattgaaa aagtggaaag cccaagcaaa
     4861 gaaaccatcc gtatgcgcat tttgcatatt tcagaggaag agcgattacg gaaacgcggg
     4921 caacgagaaa aggcacgcaa caaatttaag ccgaagccaa atagctttcc tgatgcggat
     4981 tatccattga gtgtggtaca aattgaccat acaccagttg acctaattat tgtggatagt
     5041 aagtatcgta aaccgattgg ccgaccgttt ttgacggttg cgatagatat atacagcaga
     5101 atgattgttg gttattacct ttcacttgat gcgccttctg taacttcggt ggcgatgtgt
     5161 attgcacgtg gtattttgcc gaaagaacgc ctactgcttg atttaggttt gcaaggctca
     5221 gaatggaatg cttttggcta cccagtgaaa gtgcatgtgg ataatggccc agattttcag
     5281 gctttggatt tatctaaatc ttgttctgca cacggaatcc atcttgaatt tagaccgatg
     5341 gggcgacctg aatatggcgg acatattgag cgtgttatcg gtacatttat gaaagaagtt
     5401 cacagtttag caggaacaac attctccaac atcaaagagc gtgactctta cgattcggaa
     5461 aaagaggcca ttatgactct cgatgagttt gaaaaatggt tggtacatta cattgtgaat
     5521 gtttaccaca aacgtgtgca ttctgcttta ggcatttctc ctgaacaaaa atggaagatt
     5581 ggtatttttg gagatgaaaa tgaagtggga tgtggttatc cgcaacttcc tgttgatgaa
     5641 caaacactac tacttgattt cttgccaagt atcactcgta ccattcagca taatggtgta
     5701 acaattgacg gacttcgtta ttacgatgtt gcgctaaata tgtatatcag tgattcagat
     5761 gaaagcggta aatctaagga atttctgttt cgccgagacc cgcgaaatat cagcaaaatt
     5821 tggttttatg atccgaaatt aaaacgttac ttcccaattc catttgcaaa tcaggcaatg
     5881 cccgaaatga gcatttggga atatagagag gttcgtagcc gaattgcgaa taaaggtgat
     5941 aaatatatca acgagcaaca agttttagac ggtttaaccg agatgcgtga aatggttgct
     6001 gaatcggctc aacggacgaa aaaagcacgc cgtcaggctg aacgacaaaa aatgcacaaa
     6061 gcaagtaagc caattattga aacaaaagtg gaaactaagg ctgttgtacc agtcgtagta
     6121 acatcgaatt tgcttgcttt agatgatgag agcttatctt ttggtgaggt ggactaatgc
     6181 aatacgaaca tgttcatgaa aaattccgcc atcttgtgac agcggacaat caggagagga
     6241 ttgcgttctt ggacgagcca agatggttag gttatggtgt cgccaaagac attatggata
     6301 atttggtttc tttaatgaat aaaccaaaac gcccacgaat gttgaatttg ttgattgtcg
     6361 gcgattccaa taatggaaaa accacactga tccgccgctt cttcgacttg tacggtcagg
     6421 cgtatatcga cagtgattct aatgcgattt accctattct tcttgccgaa gccccaccaa
     6481 gtgcgaatga aaaagaattg tacatctcat tattagagcg gttctacgta ccatataagc
     6541 cgacagatac gatagccaaa cttcgttatc agactatcca tttgttccga gaatttcgtg
     6601 tcaaaatgtt ggttattgac gagtttcatt ctctgttggt tggtacacca cgcttacaac
     6661 gacaggtgat gaacgcaatt aagatgcttt gtaacgagct acaaattcca attgtcggtg
     6721 ttggtactcg tgatgcaatt cgggtattac atacggatcg acaacatgcc agtcgttttg
     6781 atgttgcgga attgccaata tggaaactag ataaggaatt tcaaaaactc ctatttcaat
     6841 tccaagggat tttacctttg agggagagtt caaatctgca atctccagaa cttgctacga
     6901 agatccacac catttcaggt gggaacttag ggaacgtgca tcgcttacta acagcttgtg
     6961 cagttcaagc cattacaagt ggcacggaaa aaatcacctt agacatcatt gagaaaaatt
     7021 catgggtaca accaacaaac ggctatcgca aaataatcgg ataaaaaaag gtgttattca
     7081 tacccctatt tattcaaatg aaagtattag ctcgtggtta attcgtgcat cctttgattg
     7141 tggtacagat ccactgactt ttacagggtt ttattgggaa aaacatcggt tgtggacatt
     7201 agatttagat cgtggcttgg aaaatattga gccaactatc tatgatgatg tacaggcatt
     7261 atcgggtaaa atccaacttt cagaatattc cttgtttcgc aggctttacc ctataaatgc
     7321 agatgaaacc ttagctaaag gtcaagtaag atgggtgatt ccacgttcgg caaggaatag
     7381 aacccatcac attggtcaac aatattgtcc tttgtgcttg gatgagtcgc cacatttacg
     7441 caatgattgg cggttagcgt ggaattttgg ttgtctcaag cataatatga tgttggcgaa
     7501 cagatgtttt tgttgtggta cattgtatca accccattta ctatcagcgg aaaagaggca
     7561 tttgaatcat tgtcatcaat gtggtgggaa actggaacaa ggcacaatgg aaatgagtct
     7621 agctgaaaag ctgacattgc aaggtattaa tcaggtactc gaaaaagatt caggcatctg
     7681 ttttggatac aaggtgtcgg gtaaggtgtg gtttgatatg ctccgctact gcatcaactt
     7741 attgagacgt gcatcagaca gaccaaatca tgccttagca aaatttgtag ttaatctaca
     7801 gattgatgtt gaaaatatat gtagccccaa aacaggactt tcttttgaac aacttccgct
     7861 aggtgaacgt acaaatttac ttgtgaatgc ctatcatatt ttgggaatgg aagcagattc
     7921 tattcgtagt gcaatttatt tgtgtggcgg aacacaaaaa acctttatgt ttgaaaaata
     7981 tcctgatttt tggcaagaat ttatggcact agcacccgca ggcccaaata gaacacgaaa
     8041 acgcaccaag ccccaaaatg agtctatcac agcaattaat cgccgttggg agcgtttgaa
     8101 acgcaaacta cacttaaata acgaatgaaa attaatgtaa taaaaccaca ggaagaacct
     8161 tgctccgctt gtggcaaaat ttctcgcatt tggcgcagat ataatggcga aggctactgt
     8221 gccaattgct atgctaagtg gtttccgaaa aaagagtgca gctgttgcca tcaaccaaag
     8281 cgtatctatt tgagttcaac agtatgttgg gattgcgaaa aacagactga ctgtgtacgt
     8341 tgcggtaagg ctgcgggtac attcaaaatt ggtaaaatta cccgttatgg tgcagtttgt
     8401 aatgtgtgtt cacgttattt tcgtgaagaa cgagaatgtt ttgagtgtgg tcaactatct
     8461 agaactatgc ttcgagcatc agagtcaggt catagcgagc tactctgctt gaagtgtttt
     8521 caaaaatatc ggtttgcgac ttgtaaaaac tgtcgccgtt atcgcaaagt tcatgaccgt
     8581 gataatcagc tttgtcgaaa atgtagtgag caacgaactt cacaatgccc gaagtgcaaa
     8641 caggatatgc ctgcgggata tggtaatatt tgtgcagatt gttctaggcg aactctactg
     8701 ttcaacctta ttcgaatgaa tgtgcattta ttccgccaca aaaaagtgaa aagagcatat
     8761 aaaaagttca ttttttggta tctcgcaaag tgtggcgtga gtgttgtgct gaaaaaatca
     8821 gacgaccacg tcctcttttt tatgcgttgc gatgaaaatt ggggcaacat tccagactac
     8881 cgtgagttgg ttacattctt taaacccaat ggattacgga cgcatttgac tgtgttgcgt
     8941 tggttgcttg ataccaatca agtcaaagta gatgagagct taaaagagga aatggcgggg
     9001 ttggaacgta ttcaatccct atttaacaaa ttaagtaact ctgtaccttg tattgcaaac
     9061 tactacacgc agttacaaca taaatatgag gcgggcaaaa catcactgaa atctgttcga
     9121 ttagctttac aacctgcgat tgatttcatc agttcagaat ctgtctcgtt actgccgact
     9181 caagtacaac tgaatagcta tcttgtggca aaaacgggac agattgctgc tattacaggc
     9241 tttataaacc acctgaaccg agaatatcat tgtgaattag aaattgaccg ctccctcatt
     9301 caaaagatga aagaaaagca gttgaagcag caagcaaaac agcgattagc gatactctac
     9361 aagcaagaaa aactaagtat caaagagcaa aatgagctac tctcagtcgt attactgaat
     9421 ttgcacaaca tttggataaa atcaccgaaa aaattaagta tttcagagat agacggtata
     9481 gcctactatg ttgataatga gaaaaaatac tttataccaa aagacattca catacgcctg
     9541 atggaataag ctgtcgtcaa tttttatttt tgcgatctgt gtcgagaaaa taatatttat
     9601 gaatcgacag atgaaataat attgataaag tctctttgtg tgttcaacaa acaggagata
     9661 aatatgacat taaaggctca atttcgtgaa tggcttaaaa aagagcaaga acatgatgaa
     9721 atgatagggt tcgcccatat cccttgcatt ttatctaaag tggatagcaa actggcgatt
     9781 gttagcggaa atgcttatga gaagaaatat ctcagatatt ggatcaagtg ttttaggttc
     9841 gatagaaata tcagcaagta tattaaatag gttaaatatc tagct
//
LOCUS       DANMBQ010000092         9833 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.092, whole genome shotgun sequence.
ACCESSION   DANMBQ010000092 DANMBQ010000000
VERSION     DANMBQ010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9833)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9833)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9833
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.092"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            162..842
                     /locus_tag="PXE92_001869"
     CDS             162..842
                     /locus_tag="PXE92_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00153 family protein"
                     /protein_id="HDL5761088.1"
                     /translation="MALNNILGLFAQSPLKPLQKHSNKVTECSELLESFFEATFEHDW
                     EKAAEVRGKIVDLERRADALKREIRLKLPRGLFMPVERGDLLELVTQLDKLANYSRDI
                     SGRIIGRKLIIPTEMQPLFKKFLSRSIDASRQVRKVLDEMDQLLETGFRGRELDFVNK
                     MILELDQIEDDTDQYQITLRHTLLELEKNLNPIDVMFLYKCIERISVLADQAQRIGSR
                     IELMLAKS"
     gene            854..2122
                     /locus_tag="PXE92_001870"
     CDS             854..2122
                     /locus_tag="PXE92_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDL5761089.1"
                     /translation="MELLNQYGSILVIITAIVGFMMAFGIGANDVSNAMGTSVGSGTI
                     TIKQAILIAMVFEFAGAYLAGGEVADTIKSGIIDPAQFANSPDILVLGMMASLCAAGM
                     WLIIATKMGWPVSATHTIIGAVIGFALITIGSDAIQWDALGGIVGSWFVTPILAGIVA
                     YSIFINSQKLIFNRSNPFKQAKKYGPMYMGITIFILVIVTVSKGLKHVGLHLDTAETL
                     GISFALALLAFIIGYFYFRSKSFAMKARAEEKGFAGVEKIFSILMLITACAMAFAHGS
                     NDVANAIGPLAAVESIVRSGGMIEGKTTLAPWILPLGALGMMIGLAIMGKNVMATVGT
                     GITDLTPSRGFAAQFACAVTVVIASGTGLPISTTQTLVGAVLGVGFARGIAALNLGVI
                     RNIVISWVITLPVGAVLSIIIYYILSAIFY"
     gene            2177..2788
                     /locus_tag="PXE92_001871"
     CDS             2177..2788
                     /locus_tag="PXE92_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDL5761090.1"
                     /translation="MKKLSSALLSCFLLGLSSPALTADTYITENLSTFMRKGAGDQFR
                     ISGAIQAGEKVTVLDRKERYSLIRDSRNREGWVLNSDLSDTASPKELIPQLKQQVQDL
                     TNRLSKIDTEWQQRTAEMQRRTQDSVQKSSDLVEENAQLKRELEILKNKNRDLETMHD
                     SEKREIVIQWFIYGGAVLGAGLLLGLLVPFLIPRRRRNNSGWA"
     gene            complement(2842..4140)
                     /gene="aroA"
                     /locus_tag="PXE92_001872"
     CDS             complement(2842..4140)
                     /gene="aroA"
                     /locus_tag="PXE92_001872"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDL5761091.1"
                     /translation="MEKLTLTPISRVEGEINLPGSKSLSNRALLLAALATGTTQVTNL
                     LDSDDIRHMLNALKALGVKYELSDDKTVCVVEGIGGAFKVQNGLSLFLGNAGTAMRPL
                     AAALCLKGEEKSQIILTGEPRMKERPIKHLVDALRQVGAEVQYLENEGYPPLAISNSG
                     LQGGKVQIDGSISSQFLTALLMSAPLAEGDMEIEIIGDLVSKPYIDITLSMMNDFGIT
                     VENRDYKTFLVKGKQGYVAPQGNYLVEGDASSASYFLASGAIKGKVKVTGIGKKSIQG
                     DRLFADVLEKMGAKITWGEDFIQAEQSPLKGVDMDMNHIPDAAMTIATTALFAEGETV
                     IRNIYNWRVKETDRLTAMATELRKVGAEVEEGEDFIRIQPLALENFQHAEIETYNDHR
                     MAMCFSLIALSNTEVTILDPNCTAKTFPTYFRELEKLSVR"
     gene            complement(4186..5280)
                     /locus_tag="PXE92_001873"
     CDS             complement(4186..5280)
                     /locus_tag="PXE92_001873"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL5761092.1"
                     /translation="MQFINIANEGVKSLSPYQAGKPIEELERELGIQNIIKLASNENP
                     FGFPESAKKAILNQLDDLTRYPDSNGFELKTTIAQKFGVQANQITLGNGSNDLLELFA
                     HTFAGEQDEIIYSQYAFIVYPLVTKAINAVAREILAKNWGHNLDAFLAAITEKTKLIF
                     IANPNNPTGNFLTQAEIEGFLAKVPANVIVVLDEAYTEFTAPQERVDSFGLLAKYPNL
                     IVSRSLSKAYGLAGLRIGYAVSNPEIADLLNRVRQPFNCNSLALASAIAVMNDDEFVK
                     KVAENNRLEMARYEAFCQANGLEYIPSKGNFITIDFKRPAAPIYEALLREGVIVRSIA
                     GYGMPNHLRISIGLPQENERFFTALLKVLA"
     gene            5552..6871
                     /locus_tag="PXE92_001874"
     CDS             5552..6871
                     /locus_tag="PXE92_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HDL5761093.1"
                     /translation="MNHLLYSVEDKPPFGLSLLLASQHLLAALGGIIAVPLVLGNVLK
                     LSTADTIILVNAALLISGIVTIIQCRGIGPIGIRLPSVMGTSFTFVAAALAIGFSESG
                     IAGIMGASLVGSLVMIIGSFFMPYIRKLFPPVVTGTVIMMIGLSLIPVAVDWFAGGQR
                     TDPHYATPENLIMASFVLIIVVALVQWGKGIFSAAAIVIGMMIGYIVSLALGWVSFNG
                     VKEAQLFALPQPLHFGLEFPISGIIGMSIAYLVTIVESSGNFLALGNATKTEITGKHL
                     RGGVLCDGLGSAFAAIMSTTPFSSFSQNIGVISLTGVASRYVVAFTGALLVLAGLFPV
                     FGALIVSIPLPVLGGAGLMMFAMIIAAGIQMLDNIQRSKRNGLIIAISIGCGLAVTTR
                     PELLDKLPHFFKEVFGSGITVGSLLALILNLVLPEDKITKKENKSDE"
     gene            complement(7041..8984)
                     /gene="ftsH"
                     /locus_tag="PXE92_001875"
     CDS             complement(7041..8984)
                     /gene="ftsH"
                     /locus_tag="PXE92_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDL5761094.1"
                     /translation="MVKNILLWVVIAIVMMTAYEGFNSNFSGSSNTVPYSTFLSDIKE
                     NRLKGVDFKQNDDTILVTKNDGATYQTVMPMYDEYLMADLAKTNAVITGQPAERRGLL
                     SQILISWFPMLLLIGFYVFYMRQMQGGGGRGAMGFGKNKAKMLTADEVKTRFSDVAGC
                     DEAKEEVGEVVEFLRDPTKFQKLGGRIPKGILMVGPPGTGKTLLAKAIAGEARVPFFT
                     MAGSDFVEMFVGVGASRVRDLFDQAKKNAPCIIFIDEIDAVGRKRGGAGFSGGHDERE
                     QTLNQMLVEMDGFEGSEGVIIIAATNRADVLDDALTRPGRFDRQVTVDLPNVKGREQI
                     LKVHLKKVPLAEGVDPMQIARGTPGYSGAQLANLVNEAALFAARKNKRVVMMEDFEEA
                     RDKINMGPERRSNTMTEKEIINTAYHEAGHVIVGYLMPEHDPLNKVTIVPRGQALGFA
                     QFLPEGDRVSETFTKLESQLSTLFAGRIAEGLIFGEDKITTGASSDIHRATQIARAMV
                     TQWGFSKELGPIFYQNEDGMGAIKGVSEESQKLIDVEMRKIIDRNYQRAKQTLEENMD
                     ILHAMKDALLKYETLDSKQIDDLMARRPVGEPSGWTDTPTKDDNATPPSGEQAADVSS
                     TLEDNPNKDNNIGDSLADTKAEH"
     gene            complement(9105..9731)
                     /gene="rlmE"
                     /locus_tag="PXE92_001876"
     CDS             complement(9105..9731)
                     /gene="rlmE"
                     /locus_tag="PXE92_001876"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HDL5761095.1"
                     /translation="MGRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQT
                     DRLFKPGMTVVDLGAAPGGWSQYVVTQIGSKGRVIACDILDMNPIVGVDFLQGDFREE
                     SVLNALLERVGEDKVNVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLATKGSF
                     VVKVFQGEGFDEYLREIRSLFSVVKVRKPEASRDRSREVYIVATGYKG"
BASE COUNT         2765 a         2100 c         1902 g         3066 t
ORIGIN      
        1 aagcataaat ttcttccatt ttttgcaaaa aaattattaa aacaaaccgc ttgtcttaaa
       61 aacataattt aatttcgtga tctttactaa tacatcaagt aaaatacgcc ggactttaca
      121 gtaagaagtc attgtcaata ttatcactat ggagatattt tatggcattg aataacattt
      181 taggtttatt cgcccagtcc ccacttaaac cgttacaaaa acactcaaat aaagtgactg
      241 aatgtagcga gttattagaa tctttttttg aagcgacttt tgaacatgat tgggaaaaag
      301 cagctgaagt gcgcggtaaa attgttgatt tagaacgccg cgcagatgcc cttaaacgtg
      361 aaatccgctt aaaactgcct cgtggtttat ttatgccagt tgaacgcggt gatttattag
      421 aactagtcac acaattagat aagttagcaa actattcaag agatatttcc ggtcgcatta
      481 ttggtcgtaa attaatcatt cctaccgaaa tgcaaccact tttcaaaaaa ttcctttctc
      541 gtagtattga tgctagccgt caggtacgca aagttttgga tgaaatggat cagttattag
      601 aaactggttt tagagggcga gagcttgatt tcgtcaataa aatgattctt gaacttgacc
      661 aaattgaaga tgataccgac caatatcaaa ttacattacg tcatacactt cttgagttag
      721 aaaaaaacct gaaccctatt gatgtgatgt ttttatacaa atgtattgaa agaatcagcg
      781 ttctagctga ccaagcccag cgaattggtt ctcgtattga acttatgctg gcgaagtcat
      841 aggagaaaat taaatggaat tactcaatca atatggctca atactggtga ttattactgc
      901 tattgtaggg tttatgatgg ctttcggtat tggtgctaat gatgtttcaa atgccatggg
      961 aacatccgtc ggctctggaa caattacgat taaacaagct attttaattg ctatggtatt
     1021 tgaatttgct ggtgcttatc tggcaggcgg tgaagtcgca gatacaatta aaagtggcat
     1081 tattgatccg gcacaattcg ccaatagccc tgatatcctg gtacttggaa tgatggcatc
     1141 tctctgtgct gccggaatgt ggctaattat tgcaactaaa atgggttggc cggtttcagc
     1201 aactcacaca atcattggtg ccgttattgg ttttgcatta atcactattg gttcagatgc
     1261 aattcaatgg gatgcattag gtggaattgt tgggagttgg tttgtgaccc ctattcttgc
     1321 ggggatcgta gcatattcga tctttattaa ctcacaaaaa ctgatcttta accgctcaaa
     1381 cccattcaaa caagcgaaaa agtatggccc gatgtacatg ggaattacta tttttatttt
     1441 agttattgta accgtgtcaa aaggcttaaa gcacgtagga ttacatctag atacagctga
     1501 aacattggga atttcattcg cgcttgcctt acttgctttt atcattggat atttttattt
     1561 ccgcagtaaa agctttgcaa tgaaagctcg tgcagaagag aaaggcttcg ctggcgttga
     1621 gaaaattttt agtattttaa tgcttattac ggcctgtgct atggcttttg ctcatggctc
     1681 taatgatgtt gctaatgcta ttgggcctct agctgctgtt gaatctattg taagaagtgg
     1741 tggaatgatt gaaggtaaaa cgactttagc cccttggatt ctcccactag gcgccttagg
     1801 tatgatgatt ggtttagcta ttatgggcaa gaatgtaatg gctacagtag gtactggtat
     1861 taccgacctt actccaagcc gtggctttgc tgctcaattt gcctgcgccg tcacggttgt
     1921 cattgcatca ggtactggtt taccaatatc aacaacccaa acgcttgtag gagcagtatt
     1981 aggtgtggga ttcgcccgtg gtattgctgc acttaactta ggcgttattc gtaatattgt
     2041 tatatcatgg gtaattacct tgcctgtagg tgctgtgctt tcaattatta tctattatat
     2101 tttaagcgct attttctatt aatttttcaa aaagaataca ggcaactgta ttcttcctag
     2161 ctttagagga atatatatga agaaattatc atcagctctt ctgtcttgtt ttttactcgg
     2221 cctatctagc cctgctttaa cggcagacac ttacattact gaaaatctga gtacatttat
     2281 gcgcaaaggt gctggtgatc aattccgcat ttcaggcgct attcaagcag gtgaaaaagt
     2341 cacagtatta gatcgtaaag agcgctacag tctgattcga gatagtcgta accgtgaagg
     2401 ttgggtactt aattcagact taagcgatac tgctagtcca aaagagctga ttcctcaatt
     2461 aaaacaacag gttcaagatt taaccaatcg cctgagcaaa atcgataccg aatggcaaca
     2521 acgtaccgca gaaatgcaac gtagaacgca agattcagtg cagaaaagca gtgatttggt
     2581 tgaggaaaat gcacaactaa aacgtgaact ggaaatcctg aaaaacaaaa atcgtgattt
     2641 agaaacaatg cacgattccg agaaacgtga aatcgtgatt cagtggttca tctatggtgg
     2701 tgctgtgtta ggcgcaggtt tactacttgg gttactcgtg cctttcctga tccctcgccg
     2761 cagacgtaac aacagcggtt gggcttagtc tgccacaata aaacgtaaaa aggattcagt
     2821 tttctgaatc cttttttact tttatctgac cgataatttt tccaactccc taaagtaagt
     2881 cgggaacgtt ttagcggtac aatttggatc taagatcgtc acttctgtat tcgataacgc
     2941 aattaatgaa aaacacattg ccatacggtg atcgttatag gtttcaattt cagcgtgctg
     3001 gaagttttct aacgcaagcg gttgaatccg aataaaatct tccccttctt ctacctctgc
     3061 cccgacttta cgcaattcgg ttgccattgc tgtcaagcgg tcggtttctt ttacccgcca
     3121 gttataaata ttgcggataa ctgtttctcc ttcggcaaat aaagcggttg ttgcaatcgt
     3181 cattgccgca tcaggaatat gattcatatc catatctacg ccttttagcg gggattgctc
     3241 ggcttgaata aaatcctctc cccaagtgat ttttgccccc attttttcca acacatcggc
     3301 aaacaagcgg tcgccttgga tcgatttttt accaatgccc gttactttta ccttgccttt
     3361 aatcgcaccg gaggctaaga aataagaggc agaagaggca tctccctcca ccaaataatt
     3421 accttgtgga gcaacatagc cttgtttacc tttaactaaa aaggttttgt aatctcgatt
     3481 ttcaaccgta ataccaaaat cgttcatcat cgaaagggta atatcaatat aaggttttga
     3541 taccagatca ccgataatct caatttccat atcgccttcc gctaatgggg cagacatcag
     3601 caatgcggtt agaaattggc tggaaatcga gccgtcaatt tgcacttttc cgccctgcaa
     3661 accgctattg ctaattgcca acggtggata gccttcattt tctaaatact gtacctctgc
     3721 ccctacttgg cgtaaagcat cgactaagtg tttaatcggg cgttctttca ttcttggttc
     3781 accggtaaga atgatttggg atttttcctc accttttaaa cacaatgctg ctgcaagtgg
     3841 tcgcattgcc gtgcctgcat tgccgagaaa cagtgataag ccgttttgaa ccttaaaagc
     3901 tccaccaatc ccttcaacta cacagacggt tttatcgtcc gatagctcat atttcacgcc
     3961 taacgctttt aaggcattga gcatatgtcg aatatcatca ctatctaata aattggtcac
     4021 ttgagtcgta ccggtggcta aggcggctaa taataaggct cggttagaca ggcttttaga
     4081 accaggtaaa ttgatctcgc cttctactcg ggaaatcggg gttaaagtta gtttttccat
     4141 ttttctcttt aaatttgtaa aattttcata aaaggtaacc gcttgttaag ctaacacttt
     4201 caataaggca gtaaaaaatc tctcgttttc ttgcggtaaa ccgatactaa tgcgtaaatg
     4261 attcggcatt ccataacctg ctatcgagcg aacaatcacg ccttcacgca gtaatgcctc
     4321 ataaatcgga gcggcaggac gtttgaaatc aatagtaata aaattgccct tagaagggat
     4381 atattccaag ccgtttgctt ggcagaaagc ctcatagcga gccatttcca agcggttatt
     4441 ttctgccact tttttgacaa attcatcatc attcattacc gcaatcgctg aagctaaggc
     4501 aagactattg cagttaaacg gctggcgaac acgatttaat aaatccgcaa tttcagggtt
     4561 tgaaaccgca taaccaatcc gaagcccggc taagccgtaa gccttagaga gtgaacgtga
     4621 cacaattaaa ttcgggtatt ttgccaataa gccaaacgaa tccacccgtt cttgaggcgc
     4681 agtaaactcg gtataagctt cgtccagcac cacgattaca tttgccggca ctttagctaa
     4741 aaagccctca atttccgctt gggttaaaaa attaccggtc ggattattcg ggttggcaat
     4801 aaaaattaat ttagtttttt cggtaattgc agccaaaaag gcatctaaat tgtgtcccca
     4861 atttttagcc agaatttcac gggcaacggc attaatcgct ttcgtcacca acggatacac
     4921 aataaacgca tactgagaat agataatttc atcttgctca ccggcgaagg tgtgggcaaa
     4981 cagctctaat aaatcgtttg agccattgcc taaggtgatt tgattggctt gtacgccaaa
     5041 tttttgggca atagtggttt ttaattcaaa gccgtttgaa tccggatagc gggttaaatc
     5101 gtcaagctga ttcagaatcg ccttttttgc actttcagga aaaccaaatg ggttttcgtt
     5161 cgaggctaat ttaatgatat tttgaatccc taattcacgc tctagctcct caatcggctt
     5221 tcctgcttgg taaggcgaaa gggatttcac gccctcattt gcgatgttga taaattgcat
     5281 aataacctct gattattctt ataaaatata agttcggatt gtagtaaaga atgattgcct
     5341 ttaccagtaa attttttgtt acaactggaa agaaattggt acaaacattc ggattagctt
     5401 tgcaaaaagc gtaaaaaatc ttaccgcttg tcatttatca gttagggaaa ataaaaaatc
     5461 actctcttat ataaaaacaa ttacgcaaac gattgcttat taaaaaaact tcagtataat
     5521 gccgacattt tttaactctc gaggaatcac tatgaaccat ttactttatt ctgtcgaaga
     5581 caaaccgcct ttcgggctga gcttattgct tgcctcacaa catttattag ccgctttagg
     5641 tggcattatc gctgtacctt tagtgctagg gaatgtactc aaactctcta ctgcggatac
     5701 tataatctta gttaatgctg cacttttaat ttcaggcatc gtcactatta ttcaatgtcg
     5761 aggtattggc ccaatcggga ttagactacc gagtgtaatg ggaactagct ttacgtttgt
     5821 tgcagcagca ttagcgattg gtttcagtga aagtggcatt gccggcatta tgggagcctc
     5881 tttagttggc tctctagtga tgattatcgg cagttttttt atgccttata tccgtaagct
     5941 ttttccaccc gtggtaacag gtactgtcat aatgatgatt ggcctaagtt taattcctgt
     6001 tgcagtagac tggtttgctg gtggtcagcg tactgatcca cactatgcaa ccccagaaaa
     6061 tcttataatg gctagttttg tattaattat tgtcgttgct ttagtacaat gggggaaagg
     6121 tattttttca gctgctgcta ttgtgattgg tatgatgata ggttatatcg tttcgctagc
     6181 tctgggttgg gtaagtttta atggcgtgaa agaagcacaa ctttttgcgt taccacaacc
     6241 tctacatttt ggcttagaat ttccaatctc cggtatcatc ggaatgtcaa ttgcttattt
     6301 agttaccatt gtagaatcta gcggaaattt cttagcacta ggcaatgcaa ctaaaactga
     6361 aattaccgga aaacacttac gtggaggtgt attatgtgat ggtttaggct cagcatttgc
     6421 ggcaattatg tccacaactc ccttttcttc tttctcacaa aatattgggg tcatttcatt
     6481 aaccggtgta gccagtcgct atgttgtagc atttacaggc gcattacttg tactagccgg
     6541 tttatttcct gtatttggag cattaatcgt gtctatcccg ttacctgtgc ttggcggtgc
     6601 aggcttaatg atgtttgcca tgattatcgc agccggtatc caaatgttag ataatattca
     6661 acgtagcaaa cgaaacggtt taattattgc tatctctatc ggttgtgggc tggccgtaac
     6721 aactcgacct gagctattgg ataagcttcc acacttcttt aaagaagttt ttggctcagg
     6781 tattacggtc ggctccttat tagcacttat tttgaattta gttttacctg aagataaaat
     6841 aaccaagaaa gaaaataaga gtgatgaata aatcacccta aaaaaacaag gacagctcac
     6901 aatacaactt tgatgctgtc ctttattccc atagagagca tatttaaatt taggttaata
     6961 aaaaaatctg cactctatat tggtgtttac ctttagagta cagatttctt cttattctaa
     7021 ctttctagca aacaattaga ttaatgttcc gctttggtat cggctaacga atccccaatg
     7081 ttattatctt tatttggatt atcctctaaa gttgaactta catccgctgc ctgttcacca
     7141 cttggtggag tggcgttatc gtctttagtt ggggtatctg tccaacctga tggttcaccc
     7201 accggacggc gtgccattaa atcatcaatt tgcttgctgt ctaaggtttc gtatttcaat
     7261 aaggcatctt tcattgcgtg taagatgtcc atattttctt ccaaagtttg cttcgctcgt
     7321 tgatagttgc ggtcaatgat cttacgcatt tccacatcaa tcaatttttg cgactcttcc
     7381 gatacgccct taattgcacc cattccatct tcattttgat agaaaatcgg gcctaattct
     7441 tttgagaagc cccattgagt aaccattgct cgtgcaattt gggttgctcg atgaatatca
     7501 gaggaagccc ctgtggtaat tttatcttca ccaaaaatca agccctcagc aattcgccct
     7561 gcaaataggg tggaaagttg gctttccaat ttggtaaatg tttcgcttac acggtcacct
     7621 tccggtaaga attgagcaaa acctaacgcc tgaccacgag gcacaattgt cactttattc
     7681 agcggatcgt gttccggcat taaatagcca acaataacgt gtccagcttc gtggtaagca
     7741 gtattgatga tctctttttc cgtcattgta tttgaacggc gttccggccc catattgatt
     7801 ttgtcacggg cttcttcgaa atcttccatc attaccacac gtttattctt acgggcagca
     7861 aataaggcag cttcgttcac caagtttgct aattgagcac cagagtaacc cggcgtacca
     7921 cgagcaattt gcatcgggtc aactccctct gcaagcggta cttttttcaa gtgaactttc
     7981 aaaatttgct cacgcccttt cacgttcggc aaatcgaccg tgacttggcg gtcgaaacgc
     8041 cccggacgag ttaaggcatc atctaacaca tcggcacggt tggttgcagc gatgataatc
     8101 acaccttcag agccttcaaa gccgtccatc tcaactaaca tttggttgag ggtttgttca
     8161 cgctcatcgt gtccaccgct gaaacctgca ccaccacgtt tacgccctac cgcatcaatt
     8221 tcatcaataa aaataataca aggggcattt ttcttggctt ggtcgaataa atcacgcacc
     8281 cgtgaagcac ccacacctac aaacatttcc acgaagtcgg aacctgccat tgtaaagaat
     8341 ggcactcgtg cttcacctgc aatcgctttc gccaataagg ttttacccgt acccggaggg
     8401 cctaccatca agatcccttt tggaatgcgc ccacctaatt tttgaaattt agttgggtca
     8461 cgcaaaaact caacaacttc gcctacttct tctttggctt catcacagcc ggctacatca
     8521 gaaaatctgg tcttaacttc gtctgcggtc aacattttgg ctttattttt cccaaagccc
     8581 attgcaccac gtcctccgcc accttgcatt tgtcgcatat aaaacacata gaaaccgatt
     8641 aacagcaaca ttgggaacca agaaatcaaa atttgcgaga gcaagccacg acgctcagca
     8701 ggctgaccgg taatcactgc attggttttt gctaaatctg ccattaagta ctcatcatac
     8761 atcggcatta cggtttggta ggttgcacca tcatttttcg tcaccaaaat ggtgtcatca
     8821 ttctgtttga aatcgacccc ttttaaacga ttttctttaa tatcgcttaa aaaagtcgaa
     8881 tatggcactg tatttgagct accactgaaa ttagaattaa aaccttcata ggctgtcatc
     8941 atcacaatgg caatcaccac ccaaagtaaa atatttttaa ccatatcgtt caaggttaat
     9001 cccctatctg ctgaataaaa aactgttcaa gattactata aaagcggtcg aattttccaa
     9061 tttttttgca aaatgttaat aaaaaatgac cgcttgcttg ttttctagcc tttataacct
     9121 gtcgctacaa tataaacttc tcgagaccga tctcgagacg cctccggttt tctgactttt
     9181 accacactaa agagcgagcg gatttctcga aggtattcat caaatccttc gccttggaat
     9241 accttaacca caaaactgcc tttggttgct aatacttggc gacacatatc caatgccaat
     9301 tccactaaat acattgcacg aggaatatca accgacggca taccgctgaa attgggagcc
     9361 atatccgaca tcaccacatt cactttgtct tcgcctactc gctcaagtaa cgcattcagc
     9421 accgattctt cacggaagtc gccttgtaag aaatccacgc ctacaatcgg gttcatatct
     9481 aaaatatcac aagcgattac tctgccctta ctgccgattt gcgtcaccac atattgcgac
     9541 caaccgcccg gtgcggcacc gagatccacc accgtcattc ccggtttgaa taaacggtcg
     9601 gtttgttgaa tttcatctaa cttaaaatac gcccgtgaac gcaatttttg tttatgtgct
     9661 ttttgcacaa attgatcttt aaaatgttct gcaagccaac gtgatgaact cgcacttcgt
     9721 tttctaccca tttgttcttc tatcttaatt aattcaacga tttataataa gggttaaatt
     9781 agcaaattca agagatgttc taaaatttag ctcggcttat tatgcttaat taa
//
LOCUS       DANMBQ010000093         9427 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.093, whole genome shotgun sequence.
ACCESSION   DANMBQ010000093 DANMBQ010000000
VERSION     DANMBQ010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9427
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.093"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            19..2085
                     /gene="glyS"
                     /locus_tag="PXE92_001877"
     CDS             19..2085
                     /gene="glyS"
                     /locus_tag="PXE92_001877"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HDL5761096.1"
                     /translation="MTTQNFLAEIGTEELPPKALKKLATAFAENVENELNQAGLSFEK
                     VEWFAAPRRLAVKVLSLAESQPSKEVEKRGPAVSAAFDAEGKPTKAAEGWAKGCGITV
                     EQAERIATDKGEWLVHRAVIEGQPTKNLLVDIIAKSLANLPIPKTMRWGDKTEQFVRP
                     VHTVTLLFGAELIEGEILGVKSGRTIRGHRFLGEREFQIENADQYPQLLKDRGSVVAD
                     FNERKALILAKSQEKATALGGVADIEEDLLDEVTSLVEYPNVLTAKFEERFLAVPAEA
                     LVYTMKGDQKYFPIYSKDGKLLPHFIFVSNINPEDPSKIIEGNEKVVRPRLTDAEFFF
                     KTDLKQKLEDQLPRLETVLFQQQLGTLRDKTARIEALAGEIAKQIGADETKAKRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYARHDGEDEEVAVALNEQYMPRFAGDNLPNSLVAC
                     SVALADKFDTLTGIFGIGQAPKGSADPFALRRAALGSLRIIVEKNLPLDLTDLVAKSA
                     QLFGDKLTNKDVVEDVVDFMLGRFRAWYESEGIAVDVIQAVLARRPTKPADFDARVRA
                     VSHFRTLDSAEALAAANKRVSNILAKADIAIGDIDVSACVEPAEKALAEAVIALKAEV
                     QPLIAQGDYTAVLDKLANLRQPVDAFFDGVMVNAEDQKLRQNRLAILSTLQGLFLQVA
                     DISLLQ"
     gene            complement(2190..3491)
                     /locus_tag="PXE92_001878"
     CDS             complement(2190..3491)
                     /locus_tag="PXE92_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HDL5761097.1"
                     /translation="MNIHCEKLVQSILHAVNHEVVPALGCTEPISLALASAIARQYLG
                     HLPERIEAKVSPNLMKNGMGVAVPGTATVGLPMAAAIGAIGGEPDGGLEVLKNITPEQ
                     VKQAKAMLNTDKVSVSIFETEHILYSEATLFHQANRVCVRIAEHHTNVIYIEKNGQTI
                     LSKPCAVNNDNTTEIFASLSAKDIFNFSMQIELEKIRFIEQAAQLNSALSQEGLRADY
                     GLHIGRTLQKQIGLGLISDDLLNRIVIETTSASDARMGGASLPAMSNSGSGNQGITAT
                     MPIVVVARHLNVTDEQRIRALFLSHLMAIYIHSKLPKLSALCAVTTAAMGSCAGIAWL
                     LTGKFENISMAISSMIGDISGIICDGASNSCAMKVSTSVTSSYKSILMSMDNSQVTGN
                     EGIVEHDIDRSINNLCSIASRSMQYTDRQVIEIMVNKPKLK"
     gene            complement(3505..4782)
                     /locus_tag="PXE92_001879"
     CDS             complement(3505..4782)
                     /locus_tag="PXE92_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761098.1"
                     /translation="MDTQKLSPAEFKQATKFDSTDFGWIIMSIGMAIGAGIVFLPVQV
                     GLMGMWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPTVISGYLGKNWGIFLGVL
                     YFIMLVIWMFVYSTAITNDSASYLLTFGITNTLLSDNPFYGLVLICILVALSSRGEKL
                     LFKISTFMVLTKLFVVAALGLAMIGMWQLHNIGAMPPFGKLIKDAIITLPFTLTSILF
                     LQTLSPMVISYRAKEQSREVARYKALRAMNIAFAILFITVFFYAVSFTLAMGREEALK
                     AYEQNVSALAIAAQFFPGSWATYVGVALNIFAVMTAFFGVYLGFREATQGIVMNLLLR
                     KFPAEKINPNYVQKGIMLFSILLAWSAIVLNAPVLSFTSICSPIFGLVGCLIPAYLVY
                     KVPALFKYKGLALNIIIITGILLCISPFLTFLE"
     gene            complement(4811..5479)
                     /locus_tag="PXE92_001880"
     CDS             complement(4811..5479)
                     /locus_tag="PXE92_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HDL5761099.1"
                     /translation="MPDKLEYLHDLDKEIMLSYFSLSEAIAGLLGEFCEVVIHSLNAY
                     EKSVIKIINGHHTNRKIGSPITDKGLQLLKCYQKDQSNTELVYFSRLNNGNLVKSTTH
                     IIIGHEGKPIGLFCINLNLSTPLDKTVSSFMNYDPIPPHYKSENFITHPKELIEETFL
                     KAVTHIEQHTTKHSKLYKKSIIFYLFENGIFELKEAVPIVAEKLSLTSHAIYKHLREF
                     KNNT"
     gene            5713..6003
                     /locus_tag="PXE92_001881"
     CDS             5713..6003
                     /locus_tag="PXE92_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5377 domain-containing protein"
                     /protein_id="HDL5761100.1"
                     /translation="MSVKTEVLFSNHWNVRVSDPGFEGSPSHYFETVYLTLEAFINGE
                     NVHYEFTRKVEQEVKTHRSFTDVNELFEFLGEYLSPVALGNVGVRIGQLGLA"
     gene            6070..6981
                     /gene="xerC"
                     /locus_tag="PXE92_001882"
     CDS             6070..6981
                     /gene="xerC"
                     /locus_tag="PXE92_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HDL5761101.1"
                     /translation="MTTSNPLFQQTRPYWDFLRIEKQVSPHTLSNYQRQLMAVSELFS
                     QAGIENWEEVESSSVRWMLSQSHKQGLSAKSIGLRLVALRQWFVYLIKIGRMSANPTL
                     GVKSPKVGKHLPKNIDAEQVGQLLAIESDEPSDIRDIAMMELMYSSGLRLSELQGLDL
                     GDMDLSAREVRVQGKGSKERIVPIGSQALKALNRWLEMRLQFKPQDNAVFLNKRGGRL
                     SHRSIQLAMKKWGERQGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQ
                     IYTHLDFQHLAKIYDSAHPRARRKQED"
     gene            complement(6978..7349)
                     /locus_tag="PXE92_001883"
     CDS             complement(6978..7349)
                     /locus_tag="PXE92_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HDL5761102.1"
                     /translation="MKYLYIICGFICIGLGIIGAVLPGLPTTPFLLLALFCFTKGSER
                     IRQWFIQTKLYKKYLQEYDEKRAMTMKQKITILAISFPFTLFAFFALPHIGGKIALVV
                     LVIIQYWYFFCKMKTLEPENA"
     gene            complement(7505..7594)
                     /locus_tag="PXE92_001884"
     tRNA            complement(7505..7594)
                     /locus_tag="PXE92_001884"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7558..7560),aa:Ser,seq:tga)
     gene            complement(7686..8777)
                     /gene="trmA"
                     /locus_tag="PXE92_001885"
     CDS             complement(7686..8777)
                     /gene="trmA"
                     /locus_tag="PXE92_001885"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HDL5761103.1"
                     /translation="MTLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMR
                     AEFRVWHEEGELYHIMFNPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKL
                     FQIDYLSTLSGEIAVSMLYHKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIAL
                     DCDYVEEILPVHGKNYVYRQVENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGN
                     GNFSIALAENFRKVLATEISKSSVQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRA
                     FYRLKGIDLNAYECNTIFVDPPRAGLDQATLNMVQAYERILYISCNPETLAENLQQLS
                     QTHRIEKAALFDQFPYTHHIESGVWLIRK"
     gene            complement(8842..9174)
                     /locus_tag="PXE92_001886"
     CDS             complement(8842..9174)
                     /locus_tag="PXE92_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF413 domain-containing protein"
                     /protein_id="HDL5761104.1"
                     /translation="MADSFSVTRRFFDDKNYPRGFSRHGDYTIRESQTLEQFGQACLA
                     LESGERKPATQEEKRFVAVMKGEEVAETDIEKAWLKYRTLTSKTKRIYTLSGNAGSDA
                     GDDFSAAE"
BASE COUNT         2778 a         1850 c         2094 g         2705 t
ORIGIN      
        1 aaattggtaa tttaaacaat gacaacacaa aacttccttg ccgagatcgg cacagaagag
       61 ctgccaccga aggcactcaa aaaattagcg accgcatttg cggagaatgt agaaaacgaa
      121 ttaaaccaag caggtctttc gtttgagaaa gtggaatggt ttgctgctcc tcgccgtttg
      181 gcggtgaagg tgttgagcct tgcggaaagc cagccgagta aagaggttga gaaacgaggg
      241 ccggcggtgt cggcagcgtt tgatgccgaa ggcaagccga ctaaggcagc ggaaggctgg
      301 gcgaagggct gcgggattac cgtagagcaa gctgagcgta ttgccaccga caaaggcgaa
      361 tggttggtgc atcgtgccgt gattgaaggt cagccgacta aaaatctgtt ggtcgatatt
      421 atcgccaaat cgctggcgaa cttgccgatt ccaaaaacga tgcgttgggg cgataaaacc
      481 gagcagttcg tccgccctgt gcataccgtg acacttttat tcggggcgga gttgatcgaa
      541 ggtgagatct taggcgtgaa aagcggccgt actattcgtg gtcaccgttt cttaggtgaa
      601 cgtgagttcc aaattgagaa cgccgatcaa tatccgcaac tgttgaaaga tcgtggatct
      661 gtggtagcag atttcaatga gcgtaaagcc ttaattcttg caaaatcaca ggaaaaagca
      721 accgctttgg gtggcgttgc cgatattgaa gaagatttgc tggacgaagt gacctcgttg
      781 gtggaatacc cgaacgtact caccgccaag tttgaagagc gtttccttgc tgtgccggcg
      841 gaagccttag tttacaccat gaaaggcgac caaaaatact tcccgattta ttcaaaagac
      901 ggcaaattgt taccgcactt tatttttgtg tcgaacatca atccggaaga cccaagcaaa
      961 atcatcgagg gtaacgaaaa agtggttcgc ccacgtttga ccgatgcgga gttcttcttc
     1021 aaaaccgact taaaacagaa gttggaagac caactgccac gccttgaaac cgtgttgttc
     1081 cagcaacagc ttggcacatt gcgtgataaa accgctcgca ttgaagcgtt ggcaggtgaa
     1141 attgcgaagc aaatcggggc agatgaaacc aaagcgaaac gtgcaggtct cctctcaaaa
     1201 tgtgacctga tgaccaatat ggtgtttgaa tttactgata cccaaggcgt gatgggtatg
     1261 cactatgccc gccacgacgg tgaagatgaa gaagtggcgg tggcgttaaa cgagcagtat
     1321 atgccacgtt ttgctggcga taacttgcca aattcattgg tggcttgctc ggtggcgttg
     1381 gcggacaaat ttgacacgct aacagggatt ttcggcattg gtcaagcccc gaaaggcagt
     1441 gccgacccgt tcgccctacg ccgtgcggca cttggctcgt tgcggattat tgtggagaaa
     1501 aatttaccgc ttgatttaac cgatttagtg gcgaaatctg ctcaattatt tggcgataaa
     1561 ctcaccaaca aagacgtggt tgaggacgtg gtggacttta tgctcggccg cttccgtgcg
     1621 tggtatgaga gcgaaggcat tgcggtggac gtgatccaag ccgttctcgc ccgccgtccg
     1681 accaagcctg ccgacttcga tgcccgtgtg cgtgccgtgt ctcacttccg cacccttgac
     1741 agtgccgaag ccttagccgc agcgaataaa cgggtgagta acattcttgc caaagccgat
     1801 attgcaattg gcgacattga tgtttcagct tgcgtagagc cagcagaaaa agcattagcc
     1861 gaggcggtta ttgcgttgaa agccgaagtt caaccgctga ttgcacaggg cgactacacc
     1921 gctgtgctgg ataaattagc gaacctccgc caaccggttg atgccttctt tgacggagta
     1981 atggtaaatg cagaagacca aaaactgcgt caaaaccgcc tcgccatttt aagcacgcta
     2041 caaggcttgt tcctgcaagt ggcggatatt tcgctgttgc aataacaata agtttgcaat
     2101 aattgcaaaa ttttaatgaa aatagaccgc ttgcagtaat tgtgatctgc aagcggtctt
     2161 ttttgcttga aattttacca aaggcgggat tatttaagtt ttggtttatt caccataatc
     2221 tcgatgactt ggcggtctgt gtattgcata ctacgagagg caatgctgca taagttatta
     2281 attgaacgat caatatcgtg ttcgacaatt ccttcgttgc ctgttacttg gctattatcc
     2341 atagacatca gaatggattt atagcttgat gttacgctgg tggagacttt catcgcacaa
     2401 ctgtttgaag caccatcaca gataataccg ctaatatcgc cgatcatact actaattgcc
     2461 atactgatat tctcaaattt ccctgtgagc agccacgcta tgccggcaca gcttcccata
     2521 gccgcggttg ttacggcaca gagtgcagat aatttcggta acttgctgtg aatataaatt
     2581 gccatgaggt gtgataaaaa gagtgctcta atgcgttgct catcagtgac atttaaatgg
     2641 cgggcaacga caacaatcgg catagttgct gtaattcctt gattacctga acccgaattg
     2701 ctcatagcag gtaaacttgc accgcccatt ctagcatcag aggcagaggt ggtttctata
     2761 acaatgcgat taagcaaatc atcactgatt agacctagac caatctgttt ttgcaatgtc
     2821 cttccgatat gtagcccata atcggcacgt aatccttctt gtgagagtgc ggaatttaat
     2881 tgtgctgctt gctcaataaa gcgaattttt tccaattcga tttgcataga aaaattaaat
     2941 atatcttttg ccgaaagtga agcaaagatc tcagtagtat tatcgttatt gacggcacaa
     3001 ggtttgctta aaatagtttg cccgtttttt tcaatgtaaa tgacattggt atggtgttca
     3061 gcaatacgaa cacatactcg attcgcttgg tgaaatagtg ttgcttcaga atatagaata
     3121 tgttctgttt cgaaaataga gacagacact ttatcggtat ttaacatagc tttagcttgc
     3181 ttaacctgtt ctggcgtaat attttttaat acttctaatc caccatcagg ctcccctccg
     3241 attgctccaa tagctgccgc cataggcaat ccgacggttg cagttcccgg tactgctact
     3301 cccatcccat ttttcatcaa gttaggggaa acttttgcct caatacgttc tggtaaatga
     3361 cctaaatatt ggcgtgcaat ggcggatgca agggcgagag aaataggttc tgtacagcct
     3421 aatgcaggga caacttcatg gttgactgca tgtaaaatgg attgtactaa tttttcgcag
     3481 tgaatattca tagataaaac cttattactc taaaaatgtg aggaatggag aaatacataa
     3541 taaaatgccg gtaatgataa taatattgag tgctagccct ttatatttga ataatgcagg
     3601 cactttatag actaaatagg ccggaatcaa gcacccaact aagccaaaaa taggactaca
     3661 gattgaggta aagcttaaaa ccggtgcatt taatacaatc gcactccaag ccagcagaat
     3721 ggaaaataac ataatccctt tctgcacata attaggattg attttttcag ccgggaattt
     3781 tcttaataat aggttcatca caatgccttg agtggcttct ctaaaaccta aatatacccc
     3841 gaaaaaggct gtcataacgg caaaaatatt taatgcaaca cctacatagg ttgcccaact
     3901 accagggaaa aattgggctg caattgctaa tgcggaaaca ttttgctcgt atgctttgag
     3961 cgcttcttct ctccccattg caagtgtaaa agagacagcg taaaaaaaaa cggtaataaa
     4021 taagatagca aatgcaatat tcatcgctcg tagggcttta tagcgcgcaa cttcacgaga
     4081 ctgttcttta gcacggtaag aaattaccat tgggctgaga gtttgcaaga agagtataga
     4141 ggttagggtg aaaggaaggg taatgatggc atcttttata agtttgccga aaggaggcat
     4201 tgcaccgata ttatggagtt gccacattcc aatcattgca agccctaagg cggcaacgac
     4261 aaatagctta gttaatacca taaatgtaga tattttaaac agtagctttt cgcctcgaga
     4321 agataaggca actaatatac agattagcac taagccataa aatggattat cagagagtag
     4381 tgtattggta atgccgaagg taagaagata ggaggcactg tcgtttgtaa ttgcggtaga
     4441 ataaacaaac atccaaatca ctaacataat aaaataaagt acacctaaaa agattcccca
     4501 gtttttgccc aggtagccac taataacggt ggggtaatct ttgcattccg gagattctgc
     4561 taaagtatta atgaacagac gctgaaaaag gtacatcgcc gggtatccga taatagaaga
     4621 aagtagaaaa acccacatgc ccataagtcc tacttgtacc ggtaaaaaga cgatgcctgc
     4681 cccgatagcc ataccaatac tcataatgat ccagccgaag tcggtagaat caaattttgt
     4741 tgcttgttta aattcggcag gcgagagttt ttgagtatcc atagagtctc cttaaatcgt
     4801 aacagtataa ttaagtgtta tttttgaatt ctcttaaatg tttataaatt gcgtggctgg
     4861 ttagggagag tttttctgcc acaataggta ctgcctcttt tagctcaaag atgccatttt
     4921 caaacaaata gaagataatg gatttcttat agagttttga atgtttggta gtgtgttgct
     4981 caatgtgagt aactgctttt agaaaggttt cttcaataag ttcttttggg tgagtaataa
     5041 agttttcact tttataatga ggcggaatag gatcgtaatt cataaaagag ctaacggttt
     5101 tatctaatgg tgtcgataaa tttaaattaa tacaaaataa tccgataggt ttgccctcat
     5161 gcccgataat aatatgcgtg gtggacttaa ctaagttacc gttatttaac cgtgaaaagt
     5221 aaaccagctc agtattagat tgatcttttt ggtaacattt tagtaactgt aatcctttat
     5281 ctgtaatagg cgaacctatt tttcggttag tatgatgtcc gttaatgatt ttaataacgg
     5341 atttttcata ggcattcaat gaatgaataa ccacctcaca gaattctcct aataaccctg
     5401 ctattgcttc acttaatgag aaataagaca gcataatttc tttgtctaaa tcatgaagat
     5461 actctaattt atctggcata acttttactc caatttttgt gaattataag aatgagtaaa
     5521 ttttaaagtc aattatattt aactttatta agagttaaaa gtcagtattt tttgaccaag
     5581 atcatatttt gagggaaaga tataagagga caaaccaaat aagatttgcc tcgattctga
     5641 ctaggaaaag tggcaaattc aatctatctt gattaaaata atgtacgtac ttataggaag
     5701 aaggaaaaca caatgtcagt aaaaaccgaa gttttattta gtaatcattg gaatgttcga
     5761 gtgagtgatc cgggctttga aggctcgcca agccactatt ttgaaaccgt atatttaacg
     5821 ctggaagcct ttattaacgg cgaaaatgta cattatgaat ttactcgtaa agtggagcaa
     5881 gaagtgaaaa ctcatcgcag ttttactgat gtgaatgaat tgtttgaatt tctcggcgaa
     5941 tatttaagcc ctgttgcact tggtaatgtt ggcgtgcgta tcggtcagtt ggggctagcc
     6001 taatctcaaa gggcaaatct tttgcccttg caacattttc ctaaaaatta accgcttgtt
     6061 attacgttta tgaccacttc caaccctctt ttccaacaaa cccgccccta ttgggatttc
     6121 ttacgcattg aaaagcaagt tagcccgcat accttaagca attatcaacg ccaattaatg
     6181 gcggtgagcg agcttttttc gcaagcaggc attgaaaatt gggaagaggt cgaaagtagc
     6241 tcggtgcgtt ggatgttaag ccaaagccat aagcaagggt tgagtgcgaa aagtatcggc
     6301 ttacgcttgg tggcgttacg gcaatggttt gtctatttga ttaaaatcgg gcgaatgtcg
     6361 gcaaacccga ctttaggggt gaaatcgccg aaagtaggta agcatttgcc gaaaaatatt
     6421 gatgcggagc aggtcgggca gttgctggcg attgagagtg atgagccgag cgatattcga
     6481 gatattgcga tgatggagct gatgtatagt tccggcttgc gtttatcgga attacaaggg
     6541 ctggatttag gcgatatgga tttatcggca cgagaagtac gggtgcaagg taagggtagc
     6601 aaagagcgaa ttgtgccgat tggctcgcaa gcgttaaaag cgttaaatcg ctggttagaa
     6661 atgcgtttgc aatttaagcc gcaagataat gcggtgtttc tgaataagcg aggtgggcgg
     6721 ttatctcatc gttccattca gttggcaatg aagaaatggg gtgagcgaca agggctggaa
     6781 agccatctgc atccacataa attacgtcac tcttttgcga ctcatatgtt agaggcaagc
     6841 ggtgatttgc gagcggttca ggaattattg ggtcatagta gcctgtccac cactcaaatt
     6901 tatacgcatc tggatttcca acacttagct aaaatttatg actctgccca cccaagagca
     6961 aggcggaagc aggaagatta ggcattctcc ggttcaaggg ttttcatttt gcagaagaaa
     7021 taccaatatt gaattatcac taacactact aacgcaattt tcccaccgat atggggcagt
     7081 gcaaagaaag caaatagtgt aaacggaaac gaaatcgcta aaatcgtgat tttttgcttc
     7141 atcgtcattg cccgtttctc atcatattct tgcagatatt ttttgtataa tttggtttga
     7201 ataaaccact ggcggattct ctccgagcct ttagtaaagc agaacagagc caaaagtaag
     7261 aacggtgtgg tcggcaagcc cggtaatact gccccgatga tgcctaaacc aatacaaata
     7321 aaaccacaga taatataaag gtatttcata ataattaagt tattgataat gaatcgcaat
     7381 tatcctaaag caactttagg ctgatttcaa ccagtttata gcgatggatt caagcggtgg
     7441 ttttatctga ttttcttgca aatgaaataa aaaaacctgc tgattgctca acaggtttaa
     7501 agactggcgg aggaagtgag attcgaactc acggagggcg ttaaccctcg ccggttttca
     7561 agaccggtgc attcaaccgc tctgccattc ctccgttgaa aacgttgcaa taatagagat
     7621 tattgcgaac atcgtcaagt aataaatctt aaaagctgct tattcgttct ttttttcagc
     7681 acaatttatt ttctaattaa ccaaacgcca ctttcaatat ggtgggtgta agggaattgg
     7741 tcaaaaagag cggctttttc aatccgatgg gtttggctta attgttgtaa attctcggca
     7801 agggtttccg gattgcaaga gatatagaga atccgctcat acgcttgcac catatttaat
     7861 gtagcttgat ctaaccctgc acgaggtgga tcaacaaaaa tggtattgca ttcgtaggcg
     7921 tttaaatcaa tcccttttaa gcgataaaag gctcgcacac cgttcatcgc ttgggtaaat
     7981 tcttctgccg acattcggat aatttgtagg ttaacaatgc catttttttc aatattgtat
     8041 tgagccgatt gcactgaaga ttttgagatc tcggttgcca gcactttgcg gaagttttcc
     8101 gccaaggcaa tcgaaaaatt gccgttgccg cagtaaagct caagcaaatc gccttcacta
     8161 ttttttgtgc aatttctcgc ccattccagc attttaatat tcatttccgc attcggctgg
     8221 gtaaagctgt tttccacttg gcgatacaca taatttttgc cgtgtaccgg tagaatttct
     8281 tccacataat cgcaatccag tgcgattttt tgtttattgg cacgcccgat aatttgcact
     8341 ttgaaacctt gttgctctaa acggcttttt aaggcgtttg cctgttcaac ccattcttca
     8401 ttcaggcttt tgtggtaaag cattgagact gcaatttcac cgcttaaggt gcttaaataa
     8461 tcgatctgga acagcttgcg agtcagtagt tcattgcctt taatttccgc caataatgcg
     8521 gtcatcatat ggttaatcag ctcactggca atagggaagc tatccacacg ataacgagct
     8581 ttggtttcag ggttgaacat aatgtggtac agctcgcctt cctcgtgcca cactcgaaat
     8641 tctgcccgca tacggaaatg gcttggcttt gaggcaaata cctcaatcgc aggcgggtta
     8701 aacggcttga gtaaagcggt caaattttcg gttttttttg caagaagatc ggaatattgt
     8761 tcgataggaa gagtcatttt ttaccacaaa tagcaaatga aaaaacaaac cacgaattac
     8821 ttcgtggttt taaattagaa attattcagc agcactgaag tcatcgccgg catcgctacc
     8881 tgcattgcct gaaagggtgt agatgcgttt tgttttacta gttaatgtgc ggtattttaa
     8941 ccacgctttt tcaatgtcag tttctgctac ctcttcgcct ttcattaccg caacgaaacg
     9001 tttttcttct tgagttgccg gcttacgttc accactttct aaagccaagc aagcttgacc
     9061 gaattgttct aaagtttgtg attcacgaat ggtgtaatcg ccgtggcgag agaaaccacg
     9121 tggataattt ttatcgtcaa aaaagcggcg cgtaacgctg aaactgtctg ccataataat
     9181 gcctcgttgt ttgaaattag ggaaaataaa atcggcatac attaaacaaa aacagcgaat
     9241 aaatcaatgc cttaatgtaa aaaagcggtc aaatttggca aattttttgc aaaaaactct
     9301 ttaaggagaa atattgatcc ttttaaaata gacaatgcag tctgaggtat attttttata
     9361 tttgttaagg tatattacct aaatgtattg agttttgatt aactttaata tttggagata
     9421 tactgtg
//
LOCUS       DANMBQ010000094         9328 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.094, whole genome shotgun sequence.
ACCESSION   DANMBQ010000094 DANMBQ010000000
VERSION     DANMBQ010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9328
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.094"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            11..289
                     /locus_tag="PXE92_001887"
     CDS             11..289
                     /locus_tag="PXE92_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761105.1"
                     /translation="MEILFILLGLIGFGALLAIGFTTFAAIFGVVTTVFLSLLSLLAN
                     MVGLSIIVILISLYVLLPLNTFILIALIFSAILGFLCWYHSDRQSVNQ"
     gene            complement(340..798)
                     /locus_tag="PXE92_001888"
     CDS             complement(340..798)
                     /locus_tag="PXE92_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL5761106.1"
                     /translation="MSEPIEQVKTAFDSLLNNISKPRRRLMYQQIGRELARSQRRRIK
                     AQQNPDGSAYEPRKKPKKGVKSKIKSGKMFDKITQPRFMRLRLESEGVSLGYEGGDAV
                     IARIHQQGLIGRVRKDWDLKVKYASRELLGFTDDDLQMIEDYMINILAGS"
     gene            complement(791..1276)
                     /locus_tag="PXE92_001889"
     CDS             complement(791..1276)
                     /locus_tag="PXE92_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761107.1"
                     /translation="MIKPDRLRAVLTQTIDIFQANPEKLILQYDKGKIKSKGSQSHSF
                     EYHYDLELIVVDFPYHPDVLFVPVLNFVRNEQWELLQNPELQDKIEFEIDHNNHESYD
                     IYIRLPLTERVIVKEQDGHLTATHADEPNLADVSPFTRLTEYEVYLKDELIYQWAEPN
                     E"
     gene            complement(1273..1494)
                     /locus_tag="PXE92_001890"
     CDS             complement(1273..1494)
                     /locus_tag="PXE92_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HDL5761108.1"
                     /translation="MSDQIDRANELAEKAREAALAKILQNQTACTSLFECEDCGEPIP
                     EKRREMVIGCTRCIECQTIYEHKQKGYRR"
     gene            complement(1643..2098)
                     /locus_tag="PXE92_001891"
     CDS             complement(1643..2098)
                     /locus_tag="PXE92_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761109.1"
                     /translation="MIVKLCQMTNKHFSPLMIVLVLVGVLANFVQFRQNESLKADLQA
                     RTTQNQLIQADNRNLANQLENSQIQLEAYQKQVDDLNQKVLAKMKQAEQRSNEILNEL
                     EKHKKWADSAVPPSVGKLLNQRKRAVSHPQIEPDNLSEKAGVPNTGNRD"
     gene            complement(2095..2661)
                     /locus_tag="PXE92_001892"
     CDS             complement(2095..2661)
                     /locus_tag="PXE92_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL5761110.1"
                     /translation="MSKSVKVGVFVCSVAAIIGTVKQYYSSEIRTSETGLAIIGNAEG
                     CRRDPYKCPADVITVGIGSTEASGEKINVNHKYTDKEIAERWIKDLKIAERCINRYFN
                     GDKMNENQFSAMVSAAFNMGCYNLRFYPNENGKYIQTTIHKYAMAKDFKAMCNRIPDF
                     NRSGGKVLRGLKIRREKEKALCLGQEVK"
     gene            complement(2654..2860)
                     /locus_tag="PXE92_001893"
     CDS             complement(2654..2860)
                     /locus_tag="PXE92_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HDL5761111.1"
                     /translation="MHKTEQASYFGAIFGFFGSLTLSDWGVVVSILVAILTLLLNWAY
                     RAKEYKLKEREFELKLQNQGKKNE"
     gene            complement(2866..3078)
                     /locus_tag="PXE92_001894"
     CDS             complement(2866..3078)
                     /locus_tag="PXE92_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL5761112.1"
                     /translation="MNTLIARQDDTLDELIFRHYGQTAGLVEQALEYNPELAHLPRLP
                     IGTVVTMPDIESRFATVAKSSVQLWD"
     gene            complement(3075..3590)
                     /locus_tag="PXE92_001895"
     CDS             complement(3075..3590)
                     /locus_tag="PXE92_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HDL5761113.1"
                     /translation="MEQRNHVISIPKVNGYESSKNAIKPTAESDETITNNGFFPNIEL
                     LEVRNAMRIDGTVINERLKQAVIEAMATVNADLKAYRLNAEQAQKANLQACDDEQING
                     ESVLVYKYKRAVYCLAVANLYERYRSYDSTKDGHDKAEELESTAGDLKRDYHFAVRDI
                     LGENRMISELI"
     gene            complement(3702..4391)
                     /locus_tag="PXE92_001896"
     CDS             complement(3702..4391)
                     /locus_tag="PXE92_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HDL5761114.1"
                     /translation="MRMSPARAHFLRKTAESESATPNRENLEGLQGYDLVLAQLKAHQ
                     RQLKKIQSIERKIEFKRNNFEQYRPWVEGSLAKGSGVQDTVITTMLIWSIDIGDYPTA
                     LAIAQYVLMHDLAMPEQFERTPATALVEELAEAAKKARDQKQPFEAAVLKQANDLTAE
                     FDMPDPVRAKLLRELGELIQEAEPQTALEHYQRAIALDPQCGAKGLRDKLEKQLAKQA
                     EEPKPAEEQNE"
     gene            complement(4401..5429)
                     /locus_tag="PXE92_001897"
     CDS             complement(4401..5429)
                     /locus_tag="PXE92_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HDL5761115.1"
                     /translation="MKDLTLEKYNAYLARQAELNNLPFNALATGIKFTVQPSVQQKLY
                     EKVRESSDFLKSISFVFVDEQTGETLGLDSAHTVASTTDTSGDGERKTTSIAKLVKQT
                     YHCQQINFDTHINYKQLDMWAKFPDFQQKVANVAAKQRKRDLIMIGFNGTSRAATSDR
                     NSNPLLQDVAKGWLQKMREDAKERVMNGESTDNQVLVGKGQEYANLDALVMDATEELI
                     DEWHRDDTDLVVITGRKLLADKYFPIVNQQNAPTEELAADIVISQKRIGGLKAVRVPF
                     FPANAILITKLENLAIYVQEGTTRKHIENVPKKDRIETYESENIDYVVEDYGCAALIE
                     NITLKDKE"
     gene            complement(5443..6270)
                     /locus_tag="PXE92_001898"
     CDS             complement(5443..6270)
                     /locus_tag="PXE92_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HDL5761116.1"
                     /translation="MTTKSKWFVVATEGATTDGREISREWLTQIEENYDPKNNYGARI
                     NLEHFRWRWFEKDDPHSYSYGDVLAVKTEEREDGKLQLLAEIAPTEALVKLVKDKQKV
                     YTSVEIDLNFADTGEAYLVGLAVTDTPASLGTEYLTFCAGATHNPLADRKQKPENLVS
                     EAVEANLEFTAEPEKGAWLEKFKAMFTKAKTDNDGKFAEHEKAMELLAEQFSKVSTEN
                     DRLQTELSTLQIEFTELQKQAGEFAEKFAKLEQEPSANYTPRPKATGAKAGDVQTDF"
     gene            6420..8222
                     /locus_tag="PXE92_001899"
     CDS             6420..8222
                     /locus_tag="PXE92_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HDL5761117.1"
                     /translation="MENENTITEYEVLAANPLHDKREAQSKYWAGYTVTEISRQLNIP
                     VSTIASWKKREKWDEISPVGRVEATLESRLNLLIMKESKNNNDYKEMDALRRLLESTA
                     RIKKYSNGGGNEADLNPNIKNRNKGDRKKPEQNAISEEQAELLINGFLDGMFHYQKKW
                     HEAGLTHRIRNILKSRQIGATYYFAHEALVDALVTGRNQIFISASKKQALQFRAYIVA
                     YAKRVADVELKGETITLPNESQLIFLGTNSKTAQSYHGNLYFDEIFWVNRFEEIRKVA
                     AGMASQKQYRITYFSTPSSITHSAYLLWSGKLFNRKRPKAEQVEIDISHANLKNGKKC
                     GDGQWRQIVNIYDAEAGGCNLFDIEQLKLENSPDEFEQLFMCEFIDDNQSVFKFTMMQ
                     RCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYDPSYTGDRSALVVIAPPKVDGGKFRL
                     LEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTTGLGVGVYEIVKKERPDAVALTYN
                     VELKSKMVLKGLDIISKGRFEFDSMHAVEVGASFMAIKKQITNSGRQVTYVADRSEEA
                     SHADLAWACLQVFINEPFDGKLEETTGTVDFLDD"
     gene            8231..9271
                     /locus_tag="PXE92_001900"
     CDS             8231..9271
                     /locus_tag="PXE92_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL5761118.1"
                     /translation="MKKQLRKNLTQNDRLQPQAQTEIFSFGDPIPVLDRADILNYLEC
                     SAMYEKWYNPPMSFDGLAKSLRSSTHHESAIITKANILLSTCEVDSRYLSRRDLSSFV
                     KDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQFYYVPQRFDHQEHEFAKG
                     SIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQ
                     KQEDVENIRQQLKQSKGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSR
                     DDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQERLKEFNQWLGQEVI
                     KFKPSKLLQRTQ"
BASE COUNT         2298 a         2053 c         2102 g         2875 t
ORIGIN      
        1 gggaaaatct atggaaatct tatttatctt acttgggtta attggtttcg gtgcattatt
       61 ggcaataggt tttacaacct ttgctgccat ttttggtgta gttacaacag tatttttaag
      121 cctgctttca ttattggcaa atatggttgg gctctctatt atcgttattc tgatctcact
      181 ttatgtattg ttaccactca atacttttat tttgatagca ttgatttttt cagctatttt
      241 agggtttctt tgttggtatc attcagatag acaaagcgtt aatcaataac tcaagcggtc
      301 aaaattgacc gcttttttgc aaaagtttct attcatcatt tagctaccag ccaaaatatt
      361 aatcatataa tcctcaatca tctgcagatc gtcatcagta aaacctagca actcacggct
      421 ggcatatttc acttttaaat cccaatcttt ccgcactcgt ccgattaagc cttgttggtg
      481 gattcgggcg atgaccgcat caccaccctc ataacctaag ctgacacctt cgctttcaag
      541 gcgtagccgc ataaaacgtg gctgggtaat tttgtcaaac atcttgcccg atttaatttt
      601 gctttttacc cctttcttcg gctttttgcg tggctcgtat gccgagccgt ctgggttttg
      661 ttgtgcttta atccgtctgc gttggcttcg ggcaagctct cgcccgattt gttgatacat
      721 caaccgtctg cgaggtttgc tgatattatt cagtaagcta tcaaaggcgg tttttacttg
      781 ttcgatcggt tcactcattt ggctctgccc actgataaat cagctcgtct ttgaggtaaa
      841 cctcatattc ggttaaacgg gtaaatggcg aaacatcggc aaggttcggt tcatcggcgt
      901 gggttgcagt taggtgtccg tcttgctctt tcacgatcac ccgctcggta agcgggaggc
      961 ggatataaat atcgtagctc tcgtgattgt tgtggtcgat ttcaaattcg attttgtctt
     1021 gtagttccgg gttttgcagt agctcccatt gttcatttcg cacaaaattt agcactggca
     1081 caaacaacac gtcggggtga tacggaaaat ccaccacgat tagctctaaa tcgtagtggt
     1141 attcaaacga atggctttgg ctccctttgc ttttaatttt gcctttgtca tattgcaaaa
     1201 tcagcttttc ggggttagct tggaatatat caatggtttg tgtgagcacg gctcgcaagc
     1261 gatcaggttt aatcatctgc ggtagccttt ttgcttatgc tcgtaaatgg tttggcactc
     1321 aatgcaacgg gtgcaaccaa taaccatttc tcggcgtttt tcggggattg gctctccgca
     1381 atcctcacac tcaaaaaggc tggtgcaagc ggtctgattt tgcagaattt ttgcaagtgc
     1441 cgcctctctg gctttttcgg ctaattcgtt ggctcggtcg atttggtctg acatagtcgt
     1501 ccttattaaa aaaggcgatc actcgccttg gttgattttg ttgtattgct cgatgcaatg
     1561 ctcgaacgat tcgatgatga cttggcatac ctcaatggtg ttgagtcttt tgtctagtgc
     1621 tttgacaaga tcaccgttgg tgttaatctc ggttgccggt gtttggcact ccagcctttt
     1681 cggacagatt atcgggttcg atttgagggt gtgataccgc acgctttcgt tggttgagca
     1741 gcttgccaac gctaggaggc acggcagaat cagcccactt tttatgcttt tccagttcgt
     1801 taaggatttc attacttcgt tgctccgctt gtttcatttt ggctaacact ttctgattga
     1861 ggtcgtccac ctgtttttga tacgcctcaa gctgtatttg gctgttttca agctgattgg
     1921 ctaaattgcg gttatcggct tgaatcagtt ggttttgcgt ggtgcgtgcc tgtaagtctg
     1981 ctttcaggct ttcgttttgg cgaaactgca cgaaattggc taatacgcca actagcacca
     2041 gcacaatcat tagcgggctg aaatgcttat tggtcatttg gcagagtttg acaatcattt
     2101 aacctcctgc ccgagacaca gggctttttc tttttctcgg cggattttca aacctcttag
     2161 cactttacct cccgagcggt taaaatcagg tatcctatta cacatcgctt taaaatcctt
     2221 agccatagca tatttatgga ttgttgtctg aatgtattta ccattttcat ttggataaaa
     2281 tctaaggttg taacatccca tattaaatgc tgctgatacc atcgccgaaa actgattttc
     2341 gttcattttg tcgccattaa aataacgatt gatacacctt tcagctattt taagatcttt
     2401 tatccaacgc tcggcaatct ctttatcggt gtatttgtga ttgacattaa ttttctcacc
     2461 gcttgcctcg gttgagccaa tgccaaccgt gattacatcg gcagggcatt tatacggatc
     2521 acgtctgcaa ccctccgcat tgccgataat ggctaagcct gtttcgctgg tgcggatttc
     2581 ggagctgtaa tattgcttta ccgtcccgat aatagctgca acggagcaga caaatacgcc
     2641 aacttttaca cttttactca ttctttttcc cttggttttg tagctttagc tcaaattctc
     2701 gctctttcag tttgtattct ttggctcggt atgcccaatt aagtaataag gttaaaatag
     2761 ctaccagaat actcactacc accccccaat cagatagggt gaggctacca aaaaagccaa
     2821 aaattgcccc aaaataggag gcttgttcag ttttgtgcat attttttaat cccaaagttg
     2881 cacgctggat ttcgccaccg ttgcaaaacg gctctcaata tccggcattg taactacagt
     2941 gccgatcggc aaacgtggca aatgagccag ttcggggtta tattctaagg cttgctcgac
     3001 taagcctgcc gtttgcccgt agtgccgaaa gatcagctcg tctaaggtgt cgtcttggcg
     3061 tgcaatcaag gtgttcatat caattcacta atcattcggt tttcgcccaa aatatcacgc
     3121 acggcaaagt ggtaatctcg tttcaaatca ccggcggtac tttctagctc ttcggctttg
     3181 tcgtggccgt ctttggtgct gtcataactg cggtagcgtt cgtaaaggtt cgctactgca
     3241 aggcaataga ccgctcgttt atatttgtaa accagcacgc tttcgccgtt gatttgctca
     3301 tcatcacagg cttgcaagtt cgctttttgt gcttgctctg cattgaggcg ataggctttt
     3361 aagtcggcat tgactgttgc cattgcctca atcaccgctt gttttagccg ctcattaatg
     3421 accgtgccat caatccgcat tgcatttcgc acctccagta gctcaatgtt cggaaaaaag
     3481 ccattattgg tgatagtttc atcagattct gcggtgggct tgatcgcatt tttgctggat
     3541 tcatagccat tcactttcgg gatactaata acgtgattgc gttgttccat aaggtttccg
     3601 taaggtaagg ggtggggatt ttaaaagggt gcaaaatgaa taaatcaccc tttaaaatcc
     3661 gccccttggc tggcgtggat acgctctatt tcggctttcg cctactcatt ctgttcttct
     3721 gctggtttcg gctcttcggc ttgtttggca agttgctttt ctaacttgtc tcgcaagcct
     3781 tttgcaccgc attgagggtc gagggctatc gctctttgat agtgttcaag ggcggtttgt
     3841 ggctctgcct cttggattag ctcgcctagc tcacgcagta atttggctcg cactgggtcg
     3901 ggcatatcaa attcagcggt gaggtcgttt gcctgtttca gcacggctgc ctcaaacggc
     3961 tgtttttggt ctcgggcttt ctttgccgcc tctgcaagct cttcaaccaa ggcggttgcc
     4021 ggtgtgcgtt caaactgctc cggcattgcc aaatcgtgca ttaaaacgta ttgagcaatc
     4081 gcaagggcgg ttgggtaatc gccaatatca atcgaccaaa tcagcattgt ggtgataacc
     4141 gtgtcttgca caccggagcc tttggcaagg gagccttcca cccaaggtcg gtattgctca
     4201 aaattgttgc gtttaaactc aatctttcgc tcaatcgact ggattttctt taattggcgt
     4261 tgatgggctt taagttgggc taaaactaag tcatagcctt gtaagccttc aaggttttct
     4321 cggtttgggg ttgcagactc actttctgcg gttttccgca aaaaatgagc ccgagccgga
     4381 ctcattcgca tagttccacc ttactcttta tctttgagtg taatgttttc gattaatgcc
     4441 gcacagccat aatcttcgac aacgtagtcg atattttctg attcgtaggt ttcaatacgg
     4501 tcttttttcg gcacgttctc aatatgcttg cgggttgtcc cctcttgcac atagatggct
     4561 aaattttcca gcttagtgat taaaatcgca ttcgccggga agaacggcac acgcaccgct
     4621 tttaagcccc caatgcgttt ttgtgagatc acaatatcag cggcaagttc ttcggttggt
     4681 gcgttttgct gattcacaat cgggaaatat ttatccgcaa gcaacttgcg accggtaatc
     4741 accactaaat cggtgtcatc acgatgccat tcatcaataa gttcttcggt ggcgtccatt
     4801 acgagtgcgt caagattggc atactcttga cctttgccga ctaaaacttg gttgtctgtg
     4861 ctttcgccat tcattacacg ctctttggca tcttcacgca ttttctgcaa ccagcctttt
     4921 gccacatctt gcaataacgg gttgctgttg cgatcactgg ttgccgcacg acttgtgccg
     4981 ttaaagccga tcataattaa gtcacgtttg cgttgttttg ccgcaacatt cgccactttt
     5041 tgctgaaaat cagggaattt cgcccacata tccaactgtt tataattgat atgggtgtca
     5101 aaattgattt gttggcagtg gtaggtttgt tttaccaact tcgcaataga ggtggttttg
     5161 cgttcaccgt caccgctggt atcggtggtg ctggccacgg tgtgagctga atctaaacct
     5221 aaggtttcac cggtttgctc atcaacaaac acaaagctga tagattttaa gaaatcagag
     5281 ctttcacgca ccttttcata cagcttttgc tgtaccgatg gttgcactgt gaatttaatg
     5341 ccggttgcca atgcattaaa cggcaagttg tttaattcag cttggcgtgc aaggtaggcg
     5401 ttatattttt caagggttaa atctttcatt cgtgatcctc aattaaaaat cggtttgtac
     5461 atcacctgct ttcgcaccag tggcttttgg gcgtggggtg taattggcag acggttcttg
     5521 ttccagtttt gcaaattttt cggcaaattc gcccgcttgt ttttgcaatt cggtaaattc
     5581 gatttgcaat gtgcttagtt cagtttgcaa gcggtcgttt tctgtcgaaa ctttgctaaa
     5641 ttgctcagct aacagttcca ttgccttttc gtgttcggca aatttgccgt cattgtcggt
     5701 tttggctttg gtaaacatcg ccttaaattt ctccagccac gcaccttttt caggttcagc
     5761 agtaaattct aaattcgcct ctactgcctc actcacaagg ttttccggct tttgcttgcg
     5821 gtctgctagt gggttatggg ttgcaccggc acaaaatgtg aggtattccg tgccgaggct
     5881 tgccggtgta tcagtcaccg ccaaaccaac taaatacgcc tcgcctgtgt ccgcaaaatt
     5941 aaggtcaatt tccacagagg tataaacttt ctgcttgtct ttgactaact tcactaaggc
     6001 ttcggttggg gcgatttctg ccagtaactg taatttgccg tcttcacgtt cttctgtttt
     6061 aaccgctaac acatcgccat agctgtaaga atgcgggtca tctttctcaa accaacgcca
     6121 gcggaaatgc tcaaggttaa tacgagcacc atagttattt ttcgggtcgt aattttcttc
     6181 aatctgcgtg agccattcac gactaatttc gcgtccatct gtagttgctc cttccgttgc
     6241 taccacaaac catttggatt ttgttgtcat ctgtttttcc ttgctctaaa ggggaggggt
     6301 aaaaatcgga tttatgatct tgttttgtgc cggcggtttc aatgtgtggt acgtgttaaa
     6361 tcgggtttca cagcctcaag caaatgctta aacaaggtgg atttttgata atcgcaccta
     6421 tggaaaatga aaatacaatc actgaatacg aggtgttggc tgccaaccct ctacacgata
     6481 aacgagaggc tcaatcaaag tattgggcag gttacaccgt gaccgaaatt tctcgtcagc
     6541 taaatattcc cgtctctacc attgcaagtt ggaaaaagcg agagaaatgg gacgaaatca
     6601 gccccgttgg acgtgtggaa gccacactgg aatcacggct gaatttgctg attatgaaag
     6661 agagcaaaaa caataacgac tacaaagaaa tggatgcttt acgtcggttg ttggaaagta
     6721 cagcacgaat caaaaaatat tctaacggcg gaggtaatga agccgacctc aacccaaata
     6781 ttaaaaaccg taataaaggc gaccgcaaaa agcccgagca aaatgccatt tccgaagagc
     6841 aagccgaact gttgataaac ggctttttag acggaatgtt ccattatcag aaaaaatggc
     6901 acgaagctgg gctgactcat cgaatccgca atattcttaa aagtcgtcaa attggagcga
     6961 cttattattt tgctcacgag gcgttagttg atgcgttagt aaccggtaga aatcagattt
     7021 ttatttccgc ctcgaaaaaa caggcattgc aatttagagc ctatattgtg gcatacgcca
     7081 aacgggttgc cgatgtggag ctaaaaggcg aaaccattac cttgccgaac gagtctcaac
     7141 taattttctt gggtacaaac tcgaaaacgg cacagtctta ccacggcaat ctctattttg
     7201 atgaaatctt ttgggtaaac cgctttgagg aaatccgcaa agtggcagcg ggtatggcga
     7261 gccaaaaaca atatcggatt acttattttt ctaccccttc gagcattacc cattccgcct
     7321 atctgctttg gtcgggcaag ctgtttaacc gcaaacgtcc gaaagcggaa caggtggaaa
     7381 ttgatatttc tcacgccaac ttgaaaaacg gcaaaaaatg cggagacggc caatggcgac
     7441 aaatcgtgaa tatctacgat gccgaggcag gtggctgtaa cctgtttgat attgagcaac
     7501 tcaaactgga aaactcgccc gatgagttcg agcagctctt tatgtgtgag tttattgatg
     7561 ataaccagtc tgtgttcaag ttcacgatga tgcaacgttg ccttgtggac tcgatggagg
     7621 tgtggcgaga ttatgtattc acggacggct accaacgccc attcggcaat aaagaggtat
     7681 gggttgggta tgacccgtct tacaccggcg accgctcggc gttggtggta atcgctccgc
     7741 cgaaagtgga cggcgggaaa ttccgactat tagagtatcg cacttttaaa ggggctgatt
     7801 ttgccgaaca agcggcagaa attgtcgcta tttgtgcaaa atataacgtg accagactgg
     7861 cgattgatac cacagggctt ggtgtcggtg tttatgaaat cgtcaaaaaa gaacgaccag
     7921 atgcggtggc tcttacttac aacgtagagc tgaaatccaa gatggtacta aaaggcttgg
     7981 atattatcag caaaggacga tttgaatttg actcaatgca cgctgttgag gttggtgcga
     8041 gttttatggc aattaaaaaa cagatcacca acagcggacg gcaagtgact tatgtggcag
     8101 accgttcgga agaggcaagc cacgccgacc ttgcgtgggc ttgcttgcag gtatttatta
     8161 atgagccgtt tgatgggaaa ctggaagaaa cgaccggcac agtagatttt ttagatgatt
     8221 aggacaaaaa atgaaaaaac aattgcgcaa aaatttaacc caaaatgacc gcttacaacc
     8281 gcaagcacaa accgaaattt tcagttttgg tgacccgatt ccggtgttag accgtgccga
     8341 tattctcaat tatttggagt gttcggcgat gtatgagaaa tggtataacc caccgatgag
     8401 ctttgatggc ttggcgaaat cgttaaggtc atcaacacac cacgaaagtg cgatcatcac
     8461 caaagcaaat attttgcttt ccacttgcga ggttgatagc cgttatttat cacgccgtga
     8521 tttgtcatcg tttgttaaag attatttagt atttggcaac gcctattttg aggtggtgcg
     8581 aaatcgcctt gggcaggtac agcgaatcga atcacctttg gcaaaatatg tgcgaaaggg
     8641 tttagaggct ggtcaatttt actatgtgcc acaacgattc gatcaccaag aacacgaatt
     8701 tgccaaaggc tcaatctatc acttgcttga gcctgatatt aatcaagata tttacggctt
     8761 gccacaatat ctttcggccc tgcaatctgc gtggttaaat gagagtgcta ctctgtttcg
     8821 ccgtaagtat tttttaaatg gagctcacgc cggctttgtg ttttatatga gcgatgcgtc
     8881 acaaaaacaa gaagatgttg aaaatattcg ccagcagctc aagcagtcaa aaggggtggg
     8941 gaattttaaa aacttgttcg tccacgcacc aaacggcaag aaagatggaa tacagattat
     9001 tccgattgct gatgtgtcgg caaaagatga gttttttaat atcaagaacg tgagccgtga
     9061 tgatgtgtta gctgctcacc gtgtgccacc acaactgatg gggattatcc caaataacac
     9121 cggcggtttt ggcaacgtgg ctgatgctgc cgaggtgttt tttatcaccg agattgagcc
     9181 attgcaagag cgattgaaag agtttaatca gtggttaggt caagaggtta tcaaatttaa
     9241 accgtctaaa ttgttacagc ggacacaata aaacagatct ttacaaactg acaatacagc
     9301 tcctagattg gggctttttt aatatata
//
LOCUS       DANMBQ010000095         9080 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.095, whole genome shotgun sequence.
ACCESSION   DANMBQ010000095 DANMBQ010000000
VERSION     DANMBQ010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9080
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.095"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            112..858
                     /gene="znuC"
                     /locus_tag="PXE92_001901"
     CDS             112..858
                     /gene="znuC"
                     /locus_tag="PXE92_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZnuC"
                     /protein_id="HDL5761119.1"
                     /translation="MVSLENIEVSFNGQKALQNINLSIYPNSITTIVGPNGGGKSTLL
                     KILLKLLSPNKGKVIHQKGLKIGYVPQKLHLEPSMPITVYRFLALKPHTTKEMINQAL
                     DLFSITHLTENSMQKLSGGELQRVLLARAILDRPQLLVLDEPMQGVDIIGQTELYQLL
                     NKTRDLLNCAILMVSHDLNIVMANTDEVLCINKHICCAGSPEVITHDPSFIHFFGDQF
                     ARNVAFYSHKHNHHHNLHGDICLGECSCEH"
     gene            1023..3836
                     /gene="sucA"
                     /locus_tag="PXE92_001902"
     CDS             1023..3836
                     /gene="sucA"
                     /locus_tag="PXE92_001902"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HDL5761120.1"
                     /translation="MQYTHFDDWLASSALGGANQSYIEEIYEQYLENPANVDESWRNI
                     FDSFPKTPQVEQAHTPIRDYFRKLAREQQPQSVTIIDPEAGAKQVRLLQWINAHRFRG
                     YLEAKLDPINYYRWKTSSVPELDYKYHGFTDEDLNETFTVGRYVYDKDTMKLSELDKA
                     LKETYLGPIGLEFMHVQDIEQRNWLQAKMESVLNKPLFTKAEKLNLLSELTAADGLER
                     YLGAKFPGAKRFSLEGSDAFIPMMKEIIRHASRQGMTDVVLGMAHRGRLNMLVNVFGK
                     RPAELFDEFAGKHADESRTGDVKYHQGFSSNFAVDDKNVHLTLAFNPSHLEIVSPVVI
                     GSVRARQERMRDIEHEKVLAVTVHGDSAVAGQGVVQETLNMANVRGYKVGGTIRIVIN
                     NQIGFTTSNPNDTRSTEFCTDIAKMIQAPIIHVNGDDPEAVAFAARMAVEYRTKFKRD
                     IFIDLISYRRHGHNEADEPLATQPMMYSIIKKHPTPRKVYADRLITEGVLTNEQEIEM
                     LNLYRDALDNGECVVPEWREMDMAAVDWLQYLNYDWTALYESKFPEERFLTIAKRVCE
                     YPASLKAHSRVEKIYTDRKEMYEGKKLFDWGMAETMAYATLLDEGTHVRLSGEDAGRG
                     TFFHRHAVIHNQNDGTGYVPLTQLHANQGRFQVWDSVLSEEAVLAFEYGFATTDPKTL
                     TIWEAQFGDFANGAQIVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARVERY
                     LQLCAQQNIQVCVPSTPAQVYHMLRRQAIRKMRRPLIAITPKSLLRHPLAVSSLDELI
                     NGSFQNVIGELDNIDPKQVKRVVMCSGKVYYDLIEKRRENNQTDVAIIRIEQLYPFPL
                     EEMQQILEPYAHVKDFVWCQEEPLNQGAWYCSKHNFEASLPEDAKLTYAGRPASASPA
                     VGYPSLHAKQQKQLVEDALTIAE"
     gene            3939..5168
                     /gene="odhB"
                     /locus_tag="PXE92_001903"
     CDS             3939..5168
                     /gene="odhB"
                     /locus_tag="PXE92_001903"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HDL5761121.1"
                     /translation="MTIEILTPDLPESVADATVATWHKKVGDNVKRDEILVEIETDKV
                     VLEVPASSDGILAEITQEQGATVVSKQSLGKLVVAKAGDISSATIEQKTESTPSDRKH
                     AAIENSHANADDQGPAIRRLLAEHDLQAADIQGSGVGGRITREDIEKEIAKRVQINQV
                     KGSATSQNTVSTVAFNSRSEKRVPMTRLRKRIAERLLEAKNTTAMLTTFNELDMQPIM
                     NLRKTYGEKFEKQHGVRLGFMSFYIKAVVEALKRYPEINASIDGDDVVYHNYFDISIA
                     VSTPRGLVTPVLRDCDKMSMADIEKKIKELAEKGRDGKLTVEDLTGGNFTITNGGVFG
                     SLMSTPIINPPQSAILGMHAIKDRPVAIDGQVVIRPMMYLALSYDHRLIDGKESVGFL
                     VAVKELLEDPTRLLLEI"
     gene            5461..6621
                     /gene="sucC"
                     /locus_tag="PXE92_001904"
     CDS             5461..6621
                     /gene="sucC"
                     /locus_tag="PXE92_001904"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDL5761122.1"
                     /translation="MNLHEYQAKQIFKQYGLPVSQGIACKTAEEAVEAIKQLQGEQWA
                     IKCQVHAGGRGKAGGVKLVRNEAEVREFADKWLGKRLVTFQTDANGQPVNTLYLEETC
                     NIDRELYLGAVVDRSAQKVIFMASSAGGMNIEEVAEKTPELIHKAVIDPLTGGQGYQG
                     RELAFKLGLKGDEVKQFADIFVKLANLFVEKDLALLEVNPLVITKEGQLLCLDAKMSI
                     DSNALYRHPELKELQDPSQDDEREAEAEKWNLNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLYGGKPANFLDVGGGATKERVAAAFKLILSDPNVKAVLVNIFGGIVRCDLIADGVIA
                     AVNEVGVNVPVIVRLEGTNAAQGREILANSGLSILAASSLKQAAELAVKSAN"
     gene            6630..7499
                     /gene="sucD"
                     /locus_tag="PXE92_001905"
     CDS             6630..7499
                     /gene="sucD"
                     /locus_tag="PXE92_001905"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDL5761123.1"
                     /translation="MSILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKG
                     GTTHLGLPVFNTVREAVEATGATATVIYVPAPGCKDAILEAIDAGIQLIVCITEGIPT
                     LDMLQVKQRLNQTGVRMIGPNCPGVITPDECKIGIMPGNIHKKGNIGIVSRSGTLTYE
                     AVKQTTDEGFGQSTCVGIGGDPIPGSNFIDILKLFQDDPETEAIVMIGEIGGSAEEEA
                     AAFIKENVTKPVVSYIAGVTAPKGKRMGHAGAIISGGKGTADEKFKILEDAGVTTVRS
                     LAEIGSALRKILG"
     gene            complement(7570..9015)
                     /locus_tag="PXE92_001906"
     CDS             complement(7570..9015)
                     /locus_tag="PXE92_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine:cation symporter family protein"
                     /protein_id="HDL5761124.1"
                     /translation="MDSIILFFESVLTWIVNTIDGPLWDVTIILLLGAGLFFTLTTGF
                     VQLRLLPQSLREMWGGRSTEGKSLTPFQAFTTGLASRVGVGNIGGVATAIALGGPGAV
                     FWMWITALMGMSSAFAESSLAQLYKTKDPNGMFRGGPAYYITRGLKLPSLAIAFAVTL
                     IFTFGFAFNAVQSNSIVEATKNAWDWNPVYVGMTLVVITGLIISGGVKRIGKVSAQVV
                     PMMALFYLIIAVIILGMNIEKVPSIISLIIESAFDFSAAAGGTFGALVSKTMLMGIKR
                     GLFSNEAGMGSAPNSAATSDAKHPASQGLIQMLGVFVDTIVVCTCTAVIILMSNNYGG
                     ETLRGISLTQSALQFHLGEFGLHFLAFVILLFCFTSIIGNYAYAETNIRYIKNSPWFV
                     WGFRAIVLFFVYFGAVRDGGIVWAFADTVMASMAVINLVAILILAPIVWIILKDYLRQ
                     VKSGKEPVFRIEEHQDLIHKGVDPLIWKSKE"
BASE COUNT         2849 a         1959 c         1894 g         2378 t
ORIGIN      
        1 ttttaactca atacccctaa tttttttata tcaatgaaaa tccatcatct taaaccgaat
       61 ctaaatacca ctacatttga actattcaaa cagaatttat ccgcgacatc actggtttct
      121 cttgagaata ttgaagtgtc tttcaatgga caaaaagcat tacaaaatat taatttatct
      181 atttatccta actctatcac gacgatagtc gggccaaatg gtggaggaaa atctaccctg
      241 cttaaaattt tgctaaaatt acttagccca aataaaggaa aggttattca tcaaaaagga
      301 ctcaaaattg gctatgtacc acaaaaattg catttagaac cctcgatgcc cattactgtt
      361 tatcgatttc ttgcgctaaa accacatact accaaagaaa tgattaacca agcactagat
      421 ctgttttcta ttacccatct cactgaaaat agtatgcaaa aattatcggg tggtgaactt
      481 caacgtgtat tgctggctcg ggcaatttta gatcgtccgc aactcttagt gttagatgaa
      541 ccaatgcaag gcgttgatat tataggccaa accgaactct atcaattact taataaaaca
      601 agggatctcc ttaactgtgc tattttaatg gtctcacacg acttaaatat tgtgatggcg
      661 aatacagatg aagtgctttg catcaataaa catatttgtt gtgccggaag ccccgaagtc
      721 attacacacg atccgagctt tatccatttt tttggcgacc aatttgcacg taatgttgca
      781 ttttattcac ataaacataa ccatcaccat aatttacatg gcgatatctg ccttggtgaa
      841 tgtagttgtg agcactgata ggcgtccttt ttaccaaatg tttaaaattt gtaaaaataa
      901 tgctaaaaat aaccgcttgc agcacaagat ttatctaaaa atcagactta cttcacattt
      961 tatttgctta aattggagta taataagggc gtgatttcat accacaaaca ggtcaggtct
     1021 ttatgcaata tacacatttt gatgattggc ttgcatcatc tgcattaggc ggtgcaaacc
     1081 aatcttatat agaagaaatt tatgaacagt atctagaaaa tccagcaaat gttgatgaaa
     1141 gctggagaaa catctttgat tcatttccta aaactcccca agttgaacaa gctcacaccc
     1201 ctattcgtga ctatttccgt aaattagccc gtgaacagca acctcaatcc gtcactatta
     1261 ttgacccaga agcaggggcg aaacaagttc gcttactgca atggattaac gctcaccgtt
     1321 tccgtggcta tttagaggca aaactagacc caattaacta ttaccgttgg aaaacctcca
     1381 gcgtgcctga attggactac aaatatcacg gcttcaccga tgaagatctc aacgaaactt
     1441 ttacggtcgg tcgctatgtc tatgataaag acacaatgaa gctcagcgaa ctggataaag
     1501 ccctaaaaga aacttattta gggcctattg gtttagaatt tatgcacgtt caagatattg
     1561 aacaacgcaa ctggcttcaa gccaaaatgg aaagcgtgct aaacaaaccg ctgttcacca
     1621 aagcagaaaa actgaattta ttaagcgaat tgaccgctgc cgatggttta gagcgttact
     1681 taggggcaaa attcccgggg gcaaaacggt tctcattgga aggtagtgat gcctttattc
     1741 cgatgatgaa agaaattatc cgccacgctt cccgtcaagg tatgaccgat gtggttttag
     1801 gtatggcaca ccgtggtcgt ttgaatatgt tagtgaacgt atttggtaaa cgcccggcag
     1861 aattgtttga tgaatttgcc ggcaaacacg ctgatgaaag ccgcacgggc gatgtgaaat
     1921 accaccaagg tttctcctca aactttgccg tagatgataa aaacgttcac cttacccttg
     1981 ctttcaaccc atcgcattta gagattgtta gcccggtggt aatcggctca gtgcgtgcaa
     2041 gacaagaacg tatgcgtgat atcgaacacg aaaaggtgct tgcggtgacc gttcacggtg
     2101 actctgcagt ggcagggcaa ggtgtagtgc aagaaacctt aaatatggca aatgttcgtg
     2161 gctataaagt aggaggcact atccgtattg tgatcaacaa ccaaatcgga tttaccacct
     2221 ctaacccaaa tgacacccgc tccaccgaat tttgtaccga cattgccaaa atgattcagg
     2281 caccgattat tcacgttaat ggtgatgatc cggaagctgt tgcctttgca gcgagaatgg
     2341 ctgtggaata tcgtactaaa tttaaacgtg atatttttat tgatttaatc tcttaccgtc
     2401 gtcacggtca taatgaagcc gatgagcctt tagcaactca gccaatgatg tatagcatca
     2461 tcaaaaaaca cccgacacct cgcaaagtct atgcggatcg tttaattacc gaaggtgttt
     2521 taaccaacga gcaagaaatc gagatgttaa acctgtatcg tgatgcctta gacaacggcg
     2581 aatgcgttgt gccggaatgg cgtgaaatgg atatggcagc ggtcgattgg ctacaatatc
     2641 tcaattacga ctggactgcc ctatacgaaa gtaaattccc tgaagaacga ttcttaacca
     2701 ttgccaaacg ggtgtgcgaa tatccggctt cgcttaaagc tcattctcgg gttgaaaaga
     2761 tctacactga tcgcaaagag atgtatgaag gcaagaaatt attcgactgg ggtatggctg
     2821 aaacaatggc atacgctact ttgttagacg aaggcacaca tgttcgcctt tcaggagaag
     2881 atgccggacg tggcactttc ttccatcgcc atgcggtaat ccataaccaa aatgatggaa
     2941 caggctatgt gccacttact caactgcacg ccaatcaagg gcgtttccaa gtatgggatt
     3001 ccgtactctc tgaagaagcg gtactcgcct ttgaatatgg ctttgccact accgacccga
     3061 aaacactgac catttgggaa gctcaatttg gagatttcgc taacggagct caaattgtta
     3121 tcgaccaatt tatcagctca ggcgaacaaa aatggggcag aatgtgcggt ttagtgatgt
     3181 tattaccaca cggctatgaa ggtcaagggc cggaacactc ctctgcccga gtggaacgct
     3241 atttacagct ttgtgctcag caaaatattc aagtttgcgt gccatcaaca ccggcacagg
     3301 tttaccatat gttacgccgt caagcgatcc gcaaaatgcg tcgcccattg attgcaatca
     3361 caccaaaatc attgctacgc cacccacttg cggtgtcatc tcttgatgaa ttgattaacg
     3421 gttcattcca aaatgtgatt ggcgagctcg ataatatcga tcctaaacaa gtcaaacgtg
     3481 tggtgatgtg ttcgggtaaa gtgtactacg acttaattga aaaacgccgt gaaaataacc
     3541 aaacggacgt tgccattatt cgtatcgaac agctctaccc gttcccactt gaagaaatgc
     3601 aacaaattct cgagccttac gctcacgtta aagactttgt ctggtgtcaa gaagagccac
     3661 taaaccaagg tgcgtggtat tgcagcaagc acaattttga ggcttctctg ccggaagatg
     3721 caaaattaac ttacgcaggc agaccggctt ctgcttcacc ggcggtgggt tatccatcgt
     3781 tacacgcaaa acaacaaaaa caacttgttg aagatgcttt aacgatcgct gaataataaa
     3841 atgggcgtat atacgcccta caagcggttc acttttaacc aaattttaca atttacgctg
     3901 tcggagtttt aaaactctct cgaaaaaagg aataagttat gaccattgaa attttaaccc
     3961 ccgatttacc cgaatctgtt gccgatgcga ccgttgccac ttggcataaa aaagtgggcg
     4021 acaatgtaaa acgtgatgaa attttagtcg aaattgaaac agacaaagtc gttttagaag
     4081 taccggcttc aagcgatggt attcttgcag aaattaccca agaacaaggt gctactgttg
     4141 tatccaagca atctctgggt aaattagtag tagctaaagc cggtgatatt agctctgcaa
     4201 ctattgagca aaaaacagaa tccacgccat cagaccgcaa acacgcagca attgaaaaca
     4261 gccacgcgaa cgctgatgat caagggcctg cgattcgccg tttattagcc gaacacgact
     4321 tacaagccgc tgatattcaa ggcagtggtg taggcggcag aatcacccgc gaagatattg
     4381 aaaaagagat tgccaaacga gtgcaaatca accaagtaaa agggtctgca accagccaaa
     4441 acaccgttag cactgtagca tttaacagcc gtagcgaaaa acgtgtgccg atgacacgac
     4501 tccgcaaacg tattgccgaa cgcttactag aggcaaaaaa caccactgca atgctcacta
     4561 cttttaacga gctggatatg caaccaatta tgaatttacg caaaacctat ggcgaaaaat
     4621 tcgaaaaaca acacggtgtg cgtttaggct ttatgtcgtt ctacattaaa gccgtggttg
     4681 aagcattaaa acgctaccct gaaatcaatg cctccattga tggcgatgat gtggtttatc
     4741 ataactattt cgacatcagc attgcggttt ctaccccacg aggcttagtc acacctgtgt
     4801 tgcgtgattg cgacaaaatg agtatggcag atattgagaa gaaaattaaa gaacttgccg
     4861 aaaaagggcg tgacggcaaa ttaaccgttg aagacttaac cggcggtaac tttaccatca
     4921 ccaacggcgg ggtattcggt tcattaatgt ccaccccaat tatcaacccg ccacaaagtg
     4981 cgattttggg tatgcacgct attaaagacc gccctgtcgc cattgacgga caagtagtga
     5041 tccgcccgat gatgtaccta gccttaagct atgaccaccg tttaattgac ggtaaagaat
     5101 ctgtcggttt cttagtggca gttaaagagt tattagaaga cccaacccgt cttcttttgg
     5161 aaatttaatc gaaaatatga ccgcttgtac ttttagctac aagcggtctg tttttaataa
     5221 aatttgacaa aatccgataa acgctctatt tgagttccct tctgagccac ctgagcgact
     5281 ttgaatttgt aggaaaaatt tagtgtttga gcttacaagg caagcgagtt ataaattttt
     5341 ccgtcaagca aattcaaact aagcgaagaa agtggcgaag cagggtgtgc tttcttttgg
     5401 ttacttttct ttgcacaagc aaagaaaagt aacataaaaa aaaccaaacg aggaaactct
     5461 atgaatctac acgaatatca agcaaaacaa atattcaaac aatacgggct tcccgtaagc
     5521 caagggattg cttgcaaaac ggcagaggaa gccgttgagg caattaaaca actacaaggt
     5581 gaacaatggg cgataaagtg ccaagttcac gctggtgggc gtggcaaagc cggcggggtg
     5641 aaactggttc gcaatgaagc cgaagtgcgt gaatttgccg ataaatggct cggcaaacgc
     5701 ttagttacct tccaaaccga tgctaatggg caaccggtta ataccttata tttagaagaa
     5761 acctgcaata tcgaccgtga attgtactta ggtgcagtgg ttgatcgctc cgctcaaaaa
     5821 gtgattttta tggcatcaag tgccggtggt atgaatattg aagaagtagc ggagaaaacc
     5881 cctgaattaa ttcacaaagc ggtaattgac ccactcaccg gtgggcaggg ttatcaaggg
     5941 cgtgaattag catttaaatt aggcttgaaa ggtgatgaag ttaaacaatt tgcggatatt
     6001 ttcgtgaaac tggctaacct atttgttgaa aaagatttag ctttattaga ggtaaatcca
     6061 cttgtcatca ctaaagaagg gcaactactc tgcttagatg caaaaatgtc gattgacagc
     6121 aatgctctct accgccaccc agaacttaaa gagttgcaag acccatcgca agatgacgaa
     6181 cgtgaagctg aagcggaaaa atggaatctc aactacgttg cactagatgg caatatcggc
     6241 tgtatggtaa acggtgcggg gctggcaatg gggacgatgg atatcgtcaa actttatggt
     6301 ggtaaaccgg ctaacttctt agacgttggc ggtggtgcaa ccaaagagcg tgtagcagca
     6361 gcttttaaat tgattttatc tgatccgaat gtgaaagccg tgttagtcaa tatttttggt
     6421 ggtatcgtcc gctgcgattt gattgctgat ggcgtcattg ctgctgtaaa cgaagtcggc
     6481 gtgaatgtgc ctgttattgt gcgtttagaa ggcactaatg ccgcacaggg gcgtgagatt
     6541 ttagccaata gcgggctgag tattctagcg gcatcatcat taaaacaagc ggctgaatta
     6601 gcggtaaaat ctgcaaatta ggaggaaaaa tgtcgatttt aattgataaa aacacaaaag
     6661 taatttgcca aggtttcacc ggcggacaag gtactttcca cagcgaacaa gcccttgctt
     6721 atggcacaca attagtcggc ggagtttcgc cgaataaagg tggcacaacc catttaggct
     6781 taccggtttt caacaccgta cgcgaagcgg tagaagcaac cggtgcaact gcaaccgtta
     6841 tctacgttcc ggctcccggc tgtaaagatg ctattttaga agccattgat gccggcatcc
     6901 aactaattgt ctgtattact gaaggcattc caaccttgga tatgctacaa gttaaacaac
     6961 gtctaaacca aaccggcgtg cgaatgatcg gtccgaactg cccgggtgtg attacccctg
     7021 atgagtgcaa aatcggcatt atgccgggca atatccacaa aaaaggcaat atcggtattg
     7081 tttctcgttc gggtacttta acctatgaag cagttaaaca aacaactgac gaaggctttg
     7141 gtcaatctac ttgtgtcggt atcggtggtg atccgattcc gggatctaac tttattgaca
     7201 ttttaaaact gttccaagac gatcctgaaa ctgaagcaat tgtgatgatt ggtgaaatcg
     7261 gcggctctgc cgaagaagaa gcggcagctt tcatcaaaga aaatgtcacc aagcctgtag
     7321 tcagctatat tgccggtgtc accgcaccaa aaggcaaacg aatgggacac gccggtgcga
     7381 ttatcagcgg cggcaaagga accgccgatg aaaaattcaa aatccttgaa gatgccggtg
     7441 tgacaaccgt cagaagttta gccgaaatcg gttcagctct tagaaaaatt ttaggctaaa
     7501 ctaaaagttc aagcagtcat atttacccat ttttttgtaa atatgaccgc ttgttttttt
     7561 gctattaaat tactctttcg atttccaaat taatgggtca acacctttat ggataaggtc
     7621 ttgatgttct tcaattctaa acactggctc tttgccactt ttcacttggc gaagatagtc
     7681 ttttaaaata atccagacaa tcggagcaag aattaagata gccaccaagt taattaccgc
     7741 cattgatgcc atcactgtat cggcaaatgc ccatacaatc cctccgtctc ttactgcacc
     7801 gaagtacaca aagaataaaa cgatggcacg gaatccccac acaaaccacg gactgttttt
     7861 aatgtagcgg atattagttt ctgcataagc atagttaccg ataatggatg tgaagcaaaa
     7921 cagtaaaatc acaaatgcta aaaagtgtaa accaaattca cctaaatgga attgtaacgc
     7981 actttgagta agtgaaatac ctcttaaagt ttcaccacca tagttatttg acataagaat
     8041 gatcactgca gtacaagtac agactacaat tgtatctaca aatacgccca acatttgaat
     8101 taagccttga cttgccgggt gtttcgcatc agaagtcgct gcagaatttg gtgcagatcc
     8161 cataccagct tcgtttgaga ataagccacg tttaatcccc attagcatag ttttggatac
     8221 caatgctcca aacgttccac ctgcagcagc agaaaaatca aaggcgcttt caataattaa
     8281 agagattata cttggcactt tttcaatatt catacctaaa ataattactg caataatcaa
     8341 gtagaataat gccatcattg gaacaacttg ggcagaaact ttaccaatac gcttgacccc
     8401 tccagaaata attaaccctg taatcaccac taatgtcatg cctacgtaga ctgggttcca
     8461 atcccacgca tttttggttg cttccacaat agagttagat tgcacagcat taaaagcaaa
     8521 accaaaggtg aagataagcg tcactgcaaa agcaatagca agagaaggca gttttaaacc
     8581 acgagtgatg taataggctg gcccaccacg aaacattccg tttggatctt tggttttata
     8641 caactgagcc agtgaagact cagcaaaggc ggaactcatt cccattaagg cggtaatcca
     8701 catccagaat accgcacccg gcccacccaa agcgattgca gtagctaccc caccaatatt
     8761 accaacccca acacggctgg ctaatccagt agtaaaggct tggaacggag ttaatgattt
     8821 cccttccgta gaacgtcctc cccacatttc acgtaaactt tgcggaagaa gacgcagctg
     8881 gacaaaacct gttgtaagag tgaaaaataa ccctgcaccg agcaatagga taatcgttac
     8941 atcccaaagt ggaccgtcga ttgtgttcac aatccaagtc agtacactct caaaaaatag
     9001 aataattgaa tccataaaga cctcttaatt gaaaataaaa cttccacatt gtaaccgatt
     9061 taatattttt aaaaagtttt
//
LOCUS       DANMBQ010000096         9058 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.096, whole genome shotgun sequence.
ACCESSION   DANMBQ010000096 DANMBQ010000000
VERSION     DANMBQ010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9058
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.096"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..1076)
                     /locus_tag="PXE92_001907"
     CDS             complement(<1..1076)
                     /locus_tag="PXE92_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraC family protein"
                     /protein_id="HDL5761125.1"
                     /translation="MMSFLSEVFSSFKPTKTEVISSEPNENSGESDIIQNKMSEVNNE
                     VQQLKRSGKLTQSQHHRRLYSQEPSFIDHLPWGEYLNEHGVILLDDARSVGAVFDIKP
                     IGTAGRSIEFLSRIRNLVKDALQDSFDELDVNPYVVQFYCQDSDDLQPYIEQLRNYIS
                     PIAKNSAFSEEWLRVQAKHFKDIGKPEGLFIDERVTNTAWSGRIRSTKMVIYRYVDKS
                     NDTNENLIVEQLNNACSRINGALTTAGLQLQRLDGEQFRQWLLRWFNPNPSINFEGLS
                     NNDCYHLFGKQTSNDGLPELAFNDFSEDLFYSQPKNEGNYWYFDDQPHEVVVVNNLRK
                     QPEVGLMTGEITRGRNINALFDLLP"
     gene            complement(1076..1474)
                     /locus_tag="PXE92_001908"
     CDS             complement(1076..1474)
                     /locus_tag="PXE92_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03751 family conjugal transfer lipoprotein"
                     /protein_id="HDL5761126.1"
                     /translation="MKALYCIMMSALLITGCTTSTEELLPANGSTMRDIWDKGAGNND
                     LHLYRSQQGRTLDPVDYIPNTEQRAYTRTAENEINNLFPRLPNPDLIMYVYPHQTRSG
                     EPLSIPGYSTVLPFYGRVQYAQPGDRTRGL"
     gene            complement(1487..2059)
                     /locus_tag="PXE92_001909"
                     /pseudo
     CDS             complement(1487..2059)
                     /locus_tag="PXE92_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484607.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
     gene            complement(2037..2543)
                     /locus_tag="PXE92_001910"
     CDS             complement(2037..2543)
                     /locus_tag="PXE92_001910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761127.1"
                     /translation="MAYQTLKSTQSQTQEKSDERAKQLLGSRVVEQVSESERENGNGR
                     EISSGSRQTSNEQRTGYSGNSSQEYRQISKSGERLTNKTSENALIEPTRPIKNKNGSK
                     VAPTPTNTPKTQNNANSNLLSSEQYRQTMEFLREFNDRLEQIAQNILENQLKALRTKA
                     KPSHCQWY"
     gene            2563..2712
                     /locus_tag="PXE92_001911"
                     /pseudo
     CDS             2563..2712
                     /locus_tag="PXE92_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000238497.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
     gene            2713..3306
                     /locus_tag="PXE92_001912"
                     /pseudo
     CDS             2713..3306
                     /locus_tag="PXE92_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001201005.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA--6-aminopenicillanic acid
                     acyl-transferase"
     gene            complement(3460..4275)
                     /locus_tag="PXE92_001913"
     CDS             complement(3460..4275)
                     /locus_tag="PXE92_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032492145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3')-Ia"
                     /protein_id="HDL5761128.1"
                     /translation="MSHIQRETSCSRPRLNSNLDADLYGYKWARDNVGQSGATIYRLY
                     GKPDAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTALP
                     GKTAFQVLEEYPDSGENIVDALAAFLRRLHSIPVSNCPFNSDRVFRLAQAQSRMNNGL
                     VDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVG
                     RVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
     gene            complement(4611..5447)
                     /locus_tag="PXE92_001914"
     CDS             complement(4611..5447)
                     /locus_tag="PXE92_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="HDL5761129.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK
                     PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE
                     IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM
                     SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP
                     RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT
                     SY"
     gene            complement(5447..6250)
                     /locus_tag="PXE92_001915"
                     /note="aph(3'')-Ib"
     CDS             complement(5447..6250)
                     /locus_tag="PXE92_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3'')-Ib"
                     /protein_id="HDL5761130.1"
                     /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASR
                     RGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAW
                     PSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLL
                     ARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLA
                     LMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG"
     gene            complement(6419..7264)
                     /gene="sul2"
                     /locus_tag="PXE92_001916"
     CDS             complement(6419..7264)
                     /gene="sul2"
                     /locus_tag="PXE92_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001043260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /protein_id="HDL5761131.1"
                     /translation="MEYTSKSQIARNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQA
                     RKLMAEGADVIDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQ
                     AYALSRGVAYLNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHI
                     AAFFDARIAALTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLL
                     SVSRKSFLRALTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKE
                     TARIR"
     gene            7427..8719
                     /locus_tag="PXE92_001917"
     CDS             7427..8719
                     /locus_tag="PXE92_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HDL5761132.1"
                     /translation="MGTYIPHREGIIQTIVRNSLTQYQAYASPSQTILDRLEHFAECA
                     DWTKGVVRIRCHDCGHSYFRPFSCKVFHLCPSCDQKRTLLYAEYLAEDLLLDLPHRQF
                     VFTIPKILRPYFKSDKRLFGEVSRLVFSLLSDFFSLAAGQELLCACVVSYQSFGEFAR
                     FHPHWHVLVLEGGFTKYDRFVYLPIGADEGMLKVWQAAIMALFLRKELIDQARVNMLR
                     DWKHSGFSIESETRLFNKADREALGQYVVRGATCAEKIQYDPASDTIIWTASPKGFYK
                     GKTETFKGFEFVDQLVAHLPPRRVQLLRRYGVYAGKVRKQWQERPNIYSLAPESWQKG
                     HPRESKIVPAIPQEKPETVQVSDAWSKLRKQSWARLLQKVYEVDPFVCPKCQGTMSVV
                     AIIEDPKELAKIINWAKQQEREQPVAVCARSPPELALV"
BASE COUNT         2287 a         2275 c         2186 g         2310 t
ORIGIN      
        1 ggcaacaagt caaataatgc attgatatta cgcccacgag taatctcgcc agtcatcaac
       61 cccacttccg gttgtttcct caaattattg actacaacaa cttcgtgcgg ttggtcatca
      121 aaataccaat agttgccttc atttttcggt tgagaataaa ataaatcttc actgaaatcg
      181 ttaaacgcta attctggaag cccgtcattt gaggtttgtt taccaaaaag atggtagcaa
      241 tcattgttgc ttaacccctc aaaattaata gaaggattgg gattaaacca acgtaacagc
      301 cattgacgaa attgttcgcc atccagtcgc tgcaattgta atccagcagt tgttagagct
      361 ccatttatgc gagaacaagc attgttcagc tgctcgacaa tcagattttc attagtgtca
      421 ttggatttat caacataccg atagatcacc attttggtac tacgtatacg accagaccaa
      481 gctgtatttg tcactcgctc atcaataaaa agcccctctg gtttaccgat atccttgaaa
      541 tgcttggctt gtacccgtaa ccattcttcg ctaaatgcac tatttttagc gataggcgag
      601 atataatttc gtagctgttc aatataaggc tgtaaatcat cgctgtcttg gcaataaaat
      661 tgaacaacgt acggatttac atccaattca tcaaagctgt cttgcaaggc atctttgaca
      721 agattacgta tccgacttaa aaattcaata ctacggccag cagtaccaat cggcttaata
      781 tcaaatactg ccccaacact acgggcatca tcaaggagta tcacaccgtg ctcattcaaa
      841 tattctcccc aaggtagatg atcgataaag gagggctctt gtgagtataa ccgacggtga
      901 tgctgtgact gggtgagttt tccactgcgt tttaattgtt gaacctcgtt atttacctca
      961 ctcattttat tttgaatgat gtcagactca cctgaatttt catttggttc acttgatata
     1021 acctctgtct tagtcggttt gaaagaggaa aatacctcac ttaaaaaaga catcatcaaa
     1081 gccctcttgt tcgatcaccc ggttgagcat attggactcg cccgtagaaa ggtaataccg
     1141 tagaatatcc tggaatacta agaggctctc cggaacgagt ttggtgtgga tacacataca
     1201 taatcagatc cggattaggt aaacgaggga acaagttatt aatttcattt tctgccgtac
     1261 gggtataggc tcgttgctca gtgttaggaa tataatcgac aggatcgagt gttcgtcctt
     1321 gttgtgaacg gtataagtgt agatcgttat tacctgctcc tttatcccaa atatctcgca
     1381 tcgtactgcc gttagcgggt aataattctt cagttgaagt tgtgcaacct gttatcaata
     1441 aggcactcat cattatgcaa tataaagctt tcattgtttg ttccttttaa tcaagttgtg
     1501 tattagttga tgtgtttccg tatttcactt tacgtccttt ggagttgtaa tcgatctcaa
     1561 tctctttctc gatatgaata gcgacacgat gtccaggtgg tacatagaca gcatcaaagt
     1621 tttcagcaaa acgctttcta aaccagtcgg cggattcttt taaaccaccg ccgatggctt
     1681 gccctaagat gaacttacct tgatcaccgg taacagctcc aacaacacta ttgccatcaa
     1741 ctactgtcgt tgtttgtgat tgtgaaaacc cttgggctgc ggcactggca gccgctaaga
     1801 agaaatttgt gcctaaatat tctggtgcat ttgtttttct ctccccggga acacaaggaa
     1861 tgcctgaact atcagataac caaccgatat tctcactatt ccctttgtta gtcgtgctga
     1921 caatacgccc atcattgaac acaaaggtca tactttttac atcgcctcgt acacaagata
     1981 gagtccagtc gccagtagct gtacccgaaa caatcgcacc ttctacatca agtaattcaa
     2041 taccattggc aatgagatgg tttagcctta gttctcaatg cttttagctg attttctagg
     2101 atattttggg cgatttgctc caatcggtcg ttaaattctc gcaaaaactc catagtctgc
     2161 cgatactgtt ctgatgacaa tagattagaa tttgcgttat tttgcgtttt aggcgtgttt
     2221 gttggtgtgg gtgctacctt actaccattt ttatttttga taggtcttgt aggctctatg
     2281 agagcgtttt cagacgtttt attagttaat ctttcgcctg attttgatat ttggcgatat
     2341 tcttggctag aattgcctga atatcctgtc cgctgttcgt tgctcgtttg gcgacttcct
     2401 gacgaaattt ctcgtccgtt gccattctct cgctcgcttt cgctgacttg ttcaaccact
     2461 cttgaaccca agagttgttt tgctcgttca tctgattttt cctgtgtctg tgattgtgtg
     2521 gattttaagg tttggtaagc caaaacttgc tcgttatacg ccaaggagga cacccggcgc
     2581 aaggtgctgg taggcgcgtg gatactcggc aaggttgaaa gcggcgagtg gccagaacag
     2641 cgcctgctcg atgggttgga tagctaccta gagcgcgacc atgatcgggc gctgttcgga
     2701 ctgccaccca aggggtcgat ttgcggccac acctttgcgg taaatgaaaa aggtatcgtt
     2761 aacacggtga ataacatccg tgcagtgtat cgtccgcagg gattaccgcg tcagatcctg
     2821 gctcgcgcct cgctgaatgc gaacaccctc gacgaggcca tcactatact taccggccag
     2881 ccgcgatccg gggcgtttca ccatacgctc gggcagctgg gcgatgcgcg gctgttcagc
     2941 gttgaggcca ccggtcaagg ctgttccgtt ctacccctga cgacggtaac cgggcatgcc
     3001 aaccatctgg tgcatgcggc actggctggc gttgagcaga tcgttaccga cagttcagcg
     3061 tcgcggcagt tacgcctcgt gcagtggcgg gaaacgcaac ctccgtttga cgccgcggcg
     3121 gcaaaaacca ttctctcaga tacccatgac gcagaactgc caatttaccg gctggctgcc
     3181 gacgatccgg atgaggagaa caccctcgcc acggcagttt tcaccctcga tgccaaccac
     3241 gtcaggtggc aaattttcga cattaaccgc gacgatgcta aatttcatgg agaagtgcgt
     3301 gggtgaaata gccggtcgtc agtcataaag ggcaggggag taccgttggc ccggcgttcg
     3361 atagtaccgt ccggatactg ccagatatcg gcgtccaggg agatgtcctg aagcgcggtg
     3421 tccggaattt caggtttgtg tctctacaaa gactaactat cagaaaaact catcgagcat
     3481 caaatgaaac tgcaatttat tcatatcagg attatcaata ccatattttt gaaaaagccg
     3541 tttctgtaat gaaggagaaa attcaccgag gcagttccat aggatggcaa gatcctggta
     3601 tcggtctgcg attccgactc gtccaacatc aatacaacct attaatttcc cctcgtcaaa
     3661 aataaggtta tcaagtgaga aatcaccatg agtgacgact gaatccggtg agaatggcaa
     3721 aagcttatgc atttctttcc agacttgttc aacaggccag ccattacgct cgtcatcaaa
     3781 atcactcgca tcaaccaaac cgttattcat tcgtgattgc gcctgagcga gacgaaatac
     3841 gcgatcgctg ttaaaaggac aattactaac aggaatcgaa tgcaaccggc gcaggaacgc
     3901 tgccagcgca tcaacaatat tttcacctga atcaggatat tcttctaata cctggaatgc
     3961 tgttttcccg gggagcgcag tggtgagtaa ccatgcatca tcaggagtac ggataaaatg
     4021 cttgatggtc ggaagaggca taaatgccgt cagccagttt agtctgacca tctcatctgt
     4081 aacatcattg gcaacgctac ctttgccatg tttcagaaac aactctggcg catcgggctt
     4141 cccatacaat cgatagattg tcgcacctga ttgcccgaca ttatcgcgag cccatttata
     4201 cccatataaa tcagcatcca ggttggaatt taatcgcggc ctcgagcaag acgtttcccg
     4261 ttgaatatgg ctcataacac cccttgtatt actgtttatg taagcagaca gttttattgt
     4321 tcatgatgat atatttttat cttgtgcaat ataacataag agattttgag acacaacgtg
     4381 gatttgttga ataaatcgaa cttttgctga gttgaaggat cagatcacgc atcttcccga
     4441 caacgcagac cgttccgtgg caaagcaaaa gttcaaaatc accaactggc ccacctacaa
     4501 taaaggggtc gtttgcggga gagggcgaaa tcctacgcta aggctttggc caacgatatt
     4561 ctccggtaag attgatgtgt tcccagggga taggataagt cgcttgatat ctagtatgac
     4621 gtctgtcgca cctgcttgat cgcggccgcg atagctagat cgcgttgctc ctcttctcca
     4681 tccgcgttcc aagctgcgga aaggcaccca taagcgtacg cctggtcgag caggcgacgc
     4741 ggatcgacgt ccagcgcacg agagaatgcg tccgccatct gtgcaatgcg tctaggatcg
     4801 agacaaaggt cgtctctgtc agccggatcg tagaacatat tggcggcgcc aaagcccact
     4861 tcaccgacca gaccgacggg atctatcacc agccagccgc gactggagaa catgatgttt
     4921 tcatgatgca gatcgccatg tagcccacgc agttccgagg cattgctcat catttgatcg
     4981 gctataatcg ccgcgtggac gtagtcagtt tgacaacctg cgttttgatc atcgcgcgcc
     5041 cgctgaaaca aagctgcaaa gcgatcccgg atcgggagaa gggcagaagg caggggttcc
     5101 tcagatgcgg catacagctt cgccatcagt tccgctgcaa tttcggtcgc ctggtagtcg
     5161 ccgtgctcgg caacgatgtg agagagcatt cgctccccgg catattcgag caacatcaga
     5221 ttgttctcac gaccgagcaa ccggactgct cccctcccat tgcgccatac cagatagtcg
     5281 gccccgcgca gttcatcagc aatgtcttct ataggtttca atcccttgac gattgcagga
     5341 gtcccgtctg gcaatgaaac tttccaaacg aggctggaaa aggtgtccgc aatgagaaca
     5401 ggttgcgaaa cgtgccaatg agcaggaaaa acaggcggca tgaacatcaa ccccaagtca
     5461 gagggtccaa tcgcagatag aaggcaaggc gttcgcggtc gggggcttcg atccccaata
     5521 cattgaatag gacagcgaag gcgcgctctg cttcatctgg cgctgcccag ttctcttcgg
     5581 cgttagcaat catgagtgcc aaatcggcat agcgatctgc tgttccgagc cgcccaaggt
     5641 cgatcagacc cgtgcattga agagttttag ggtccaccat gaagttcggc atgcagggat
     5701 caccatggca aacaaccata tcggtgcgct cttggtcgag ccgcaccggt agctctcgtt
     5761 cgacacgagc caaaagatcg agctgcggcg tactcttgtc ctcgtccggt aagaagtcgg
     5821 gattgacggc attgcgggac accacatcaa cggcgcgtcc gaacattcgc gacagcctgc
     5881 gctcaaacgg acattgatca accgataggc tgtgaacagc gccaagttgc tgccccattg
     5941 acggccacgc tttgagcaaa tccgctccag acagatcagc cgccggtact cccggaattg
     6001 ccgttatcac caagcatgca ccctcctgtt cctcctgcca gttgatcacc tcggggcaag
     6061 ccacacctcg acctttgagc caaatgaggc ggtcacgctc tccagcgagc tcaccgcggc
     6121 gggaagcagg tgcgattttc gcgaaggcat gcccgtcacc acgtcgaaaa acaaaatcac
     6181 cggattctcc gcctctgaca ggcaaccagt cagaatgcga ttcaccaaaa aaaatattag
     6241 ttcgattcaa tggaggttcc ttcagttttc tgatgaagcg cggaggtggc tttgccacga
     6301 ataccatctg tgccgaaata tttgcgcacc ataaggtcga ttatcctgtc gtcgggtcgc
     6361 cctcaaaggg gacatgcctg ctgaaccgcg aatatagaga aatatcccga atgtgcagtt
     6421 aacgaattct tgcggtttct ttcagcgccg ccaataccgc cagcccgtcg cgcaaggggc
     6481 gcggctcgtg tgtgcggatg aagtcagctc cacctgcggc ggcggcaagc tctgcagcga
     6541 gtgtcgcggc cccgacatcc cccggaccac ggcctgtgag cgcgcgcaga aaggatttgc
     6601 gcgaaacaga cagaagcacc ggcaaatcga agcgcagccg caattcatcg aaccgcgcca
     6661 gcaccgagag cgaggtttcg ggagcagccc ccagaaaaaa ccccatgccg ggatcaagga
     6721 caaggcggtt gcgtttgata ccggcacccg tcagcgccgc gatgcgcgcg tcaaagaacg
     6781 ccgcaatgtg atccatgatg tcgccagcgg gtgcctcgcg ccgatctgcc tgcccgtctt
     6841 gcaccgaatg cataacgacg agtttggcag atgatttcgc caattgcgga tagaacgcag
     6901 cgtctggaaa accgcggata tcattgagat aggccacacc acgcgacaag gcataggctt
     6961 gcgtcgcggg ttgataactg tcgagcgaga cgggaatgcc atctgccttg agcgcgtcca
     7021 gcaccggcgc gatacgcgcg atttctgtgt cggacgaaac aggcgcggcg tcgggattgc
     7081 tggatgccgg accgaggtcg atcacatctg ccccctcggc catcagctta cgcgcctgcg
     7141 caatggctgc gtctggcgcc agataccggc ctccatcgga gaaactgtcc gaggttatgt
     7201 tgacgatgcc gaaaatgatg agcgatttat ttcgagctat ttgtgattta cttgtatatt
     7261 ccattttcct ccgcgccgaa ggcgtcaacc taactttcgg ttgagctgcg aacgggcttg
     7321 tcccgtgagt ccgctcgaac cggttgttag gtggcgccag tccacatttt ccattatttt
     7381 cttcgcaatt gcaagcaaat gatcgttttc ctgcgtatgt ataggtatgg gaacttacat
     7441 tccccatcgg gaagggataa tccagaccat agtccgcaat tctctaaccc agtaccaagc
     7501 ctacgcaagt ccatcgcaaa ctatccttga ccgccttgag cattttgctg aatgtgccga
     7561 ttggaccaag ggtgttgttc gaatacgttg ccatgattgt ggacattcgt acttcaggcc
     7621 attttcgtgc aaggttttcc acctttgccc atcctgtgac caaaaacgga ccttactcta
     7681 tgctgaatac ctggccgagg atttgctcct tgatctaccg catcggcaat ttgtttttac
     7741 gattcccaag attctcagac catactttaa atcggataag cgactgtttg gcgaggtgtc
     7801 caggctggta ttctccttgc tttctgattt tttctccctg gcagccggtc aagaactact
     7861 atgtgcctgt gttgtcagct atcagtcgtt tggtgaattc gctcgattcc acccgcactg
     7921 gcatgttctg gttctggaag gtgggttcac caagtacgac cgctttgtat atttaccaat
     7981 tggagccgac gaagggatgc tcaaggtctg gcaagcagcg attatggctt tgtttctgcg
     8041 aaaggaacta atagatcaag cccgagtgaa catgctcaga gactggaagc attccggctt
     8101 tagcatcgag agcgaaacca gactattcaa caaggccgat cgagaagccc tcggccagta
     8161 tgtcgttcgc ggcgctacct gtgcagaaaa aattcagtat gatccagctt ccgacacgat
     8221 aatctggaca gctagcccaa agggattcta caaaggaaaa acagagacct tcaaaggctt
     8281 tgaattcgtc gaccagcttg tggcccattt accaccaagg cgggttcaat tgcttcgtcg
     8341 ctatggcgta tatgcgggca aagtccgcaa gcagtggcaa gagcgcccca atatttatag
     8401 cctggcccca gaaagttggc aaaaaggtca tccacgcgaa tccaaaattg ttccagccat
     8461 acctcaggag aaaccggaaa ctgtccaagt ttccgatgcc tggtccaagt tgcgcaaaca
     8521 aagttgggca cggttgttac agaaagtcta tgaagttgac ccgtttgttt gcccaaaatg
     8581 ccagggaaca atgtcggttg tggcgataat cgaggatccc aaggagcttg ccaagattat
     8641 taactgggca aagcagcagg aacgggagca gccagtggcc gtctgtgctc gttcacctcc
     8701 tgagcttgct ttggtgtagg tataataccc aaaaacgaag tttatgcgga acaggataac
     8761 acctcgaaat cggagtttat atggcttcgt gggggagtta tgtgtttgag ctttgtcgca
     8821 ttaacgcgaa tcaggggttg acggcagaaa tagactggaa ttacacttct tggagtcggc
     8881 gttgccggaa aattctgatt ggattagttg ttcggggtgc gaaaacagtc gtagttcggg
     8941 gaaaaaaccg aattttgacc cgaaaccgca aaaaacccga aatgacagtt cctataattt
     9001 atttatttgg gggcgtgcac ctgtagcctt agcgacttta aatgacagtt cctataat
//
LOCUS       DANMBQ010000097         8957 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.097, whole genome shotgun sequence.
ACCESSION   DANMBQ010000097 DANMBQ010000000
VERSION     DANMBQ010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8957)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8957)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8957
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.097"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..205
                     /gene="zapB"
                     /locus_tag="PXE92_001918"
     CDS             <1..205
                     /gene="zapB"
                     /locus_tag="PXE92_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell division protein ZapB"
                     /protein_id="HDL5761133.1"
                     /translation="LDQLEEKIKQAVETIQLLQLEVEELKGKNDAAKQENDTLRSEYE
                     QLKVEQQNFQDRLRSLLGQIDNV"
     gene            261..842
                     /locus_tag="PXE92_001919"
     CDS             261..842
                     /locus_tag="PXE92_001919"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014064645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HDL5761134.1"
                     /translation="MAKLYFYYSSMNAGKSTTLLQSSYNYQERGMNTLVYTAAIDDRF
                     GVGKVNSRIGISQEANLFTADTNLFAEIKALHSNKALHCILIDEAQFLTKTQVYQLSD
                     VVDKLKIPVLCYGLRTDFQAELFEGSKYLLAWADELEELKTICDCGKKAHFVVRLNEK
                     GEAIKDGEQIQIGGNDRYLSVCRYHYKQKLGKL"
     gene            complement(933..2051)
                     /locus_tag="PXE92_001920"
     CDS             complement(933..2051)
                     /locus_tag="PXE92_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HDL5761135.1"
                     /translation="MTTTYFHLMAKPSSFHCNIQCEYCFYLSKEQTIPPEKSQFMNDE
                     TLQNYIRHYIEANQSQRVDFVWQGGEPTLLGLDFYKQAVKYQQKFANGKQITNAIQTN
                     GIALNRQWASFFKENHFLVGLSIDGLSDIHDRYRISTNGKPTFERVKSAVDLLKEVGV
                     EFNTLTVVNDRNWQRGRETYQALKALGSRYMQFIPVVESHKGELQPFSVPPQGYGQFL
                     VDVFHEWLPDRGQIFVIEFDNLLGQWLGYPSNNCVFRPTCGSSLVVEACGDVYSCDHF
                     VYPDYHIGNLNQQQLAEIVSSAAQRQFGQNKQAKLSQACLNCKFRILCHGGCPKHRIV
                     PQANSENHNYLCPSYQQFFAETSSVMRQMSEQIRFAGK"
     gene            complement(2141..3589)
                     /locus_tag="PXE92_001921"
     CDS             complement(2141..3589)
                     /locus_tag="PXE92_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL5761136.1"
                     /translation="MNNIIYILLDQVRKDMLGTYGHQVVKTPNLDRLAKDGIRFNNAF
                     TPASVCGPARTSLFTGLMPSSHGIIKNGEKGGTGEIPQQNPNIAGVEGYNSFVIGKWH
                     VGTKSVPEDYGIAGHNFDGYGYPGSQVYKNLVFNQPPTHSNRYREWLAEKGYDAPEVS
                     RAYFGDNPHLRVQELCGLLSGSREQTIEWFIIDEAKKYIQASLDEKKPFFAWINFWGP
                     HTPCVVPEPYYSMYDPSQVVLDESFFKPLEGKPNHFRTISQMWGMWEASEDRWKEVIS
                     KFWGYITLIDDAIGELFRFLEENNLYENTFLVATADHGDAMGAHKMIEKGEFMFETTY
                     NIPLIIKDPHSTRVNEVDDNLVYLHDLTSTVYDVANQPIPTAFQGESILPITRQSQNN
                     DRKGLLCQLAGHFVYFEQRMWRRKDYKLVFNATDRCELYDVRKDPEEMHNLFYDEAYQ
                     AVKKEMLEEMRQEMKRLNDPLENWVYRIIDEI"
     gene            complement(3736..5433)
                     /locus_tag="PXE92_001922"
     CDS             complement(3736..5433)
                     /locus_tag="PXE92_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="solute:sodium symporter family transporter"
                     /protein_id="HDL5761137.1"
                     /translation="MLLTIITFLVVTGLVGYISWLKTRNDDLSTSKGYFLAGRGLSAT
                     VIGCSMVLTSLSTEQLIGVNANSYAGNFSIIAWTVPAVIPLCFLALYLLPKYIRNGYT
                     TIPEFFENRFDRQTRLIMSGLFLVFYLFIVIPTALYTGAIAFNKIFNLETAFGLSYGA
                     AITYTVIAIGIVGAIYAIFGGLKAVAVSDTWNAVLLVIGALLVPVFALIYLGNGSMAE
                     GVKIITTTHVEKWNAVGSATDAVPWPTIFTGIMVVHFFYWTTNQAIVQRALGARDLKA
                     GQKGILIAALFLLLLPLILNLPGLLSFHILGEGLKPIDVSYPELVNKTFPTVLQGFFI
                     AALFGAILSTFNSFLNSAATIYCKDLLPSISKKQFTDAELISYAKKVSAVMAVITMIF
                     GPLLMFGTDGIFLLTKRFAGFVNIPIVALFVIGLFNKTVSGKAARIALLAHVILYFCI
                     VWVFDVKINFVYVQAGLFVFDVALMLILGIFLKRATPYEDNKINHANVDLTSWEYAPL
                     AVASIVLGLFTLYAFLSPLGLASPDGNPAMVLAVYAVLQAVVCVVFFAKCKGKKAVN"
     gene            complement(5577..6128)
                     /locus_tag="PXE92_001923"
     CDS             complement(5577..6128)
                     /locus_tag="PXE92_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HDL5761138.1"
                     /translation="MNNMPTPEQLMSCQLSVMSDLEKGVVIYSQGYHAREFYFLKSGL
                     IGLYHMLENGKESLVRVYKANDYFGFRTFFGDNRYHCSARVLQPAELIRITPLNFIEF
                     WSNNSALIISLLKQLSTELQDAEHRLSMVSYQKTQERVMNSIHYLHQRYPNYHWTNRE
                     IAEFAGCETETAIRLRRELKKIS"
     gene            6227..7036
                     /locus_tag="PXE92_001924"
     CDS             6227..7036
                     /locus_tag="PXE92_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL5761139.1"
                     /translation="MTMTVIIILIICGIIVNITSALFGIGGGVLMMPILHSLFPELPL
                     QVISACSLTIVIGSATINLCLFHHQQIKINRKNVLIWSLAMMLGVQIGFELSFLFSDN
                     SIIAIFILTLLTLSFKTLFHKPRVKAIVPPKPKEAVSNATMCSLGGLIAGITGIGGGS
                     IMAPIVTQIRSVSPKQVAVYTNYMMVIGGIGNLYGYLSRPFVLNSTLATWQIGYVNFA
                     IVGTVVISSLFTVYFSMKLRNILSPELTTKLLGVILFTIACYMGFLQYLFT"
     gene            complement(7053..7745)
                     /gene="tsaB"
                     /locus_tag="PXE92_001925"
     CDS             complement(7053..7745)
                     /gene="tsaB"
                     /locus_tag="PXE92_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HDL5761140.1"
                     /translation="MKPSILALDTATEACSVALQYNGNITFLDEISPRSHTQRILPMV
                     DELLNQANIELKEVNYLVFGRGPGSFTGVRVGVSVAQGLAMGANLPVVAVSNLKAMAE
                     EAYQKLGATKVIALIDARMNEVYFAQFERKGEEWNEVVAEQVCSPEVAISQFQMSEET
                     VVVGTGWAAYSQFSEQNLPLVISDITLPSSRYMLSIAETEIQKGNIQSAFEIEPVYLR
                     NEVTWEKLPHKQ"
     gene            complement(7832..8914)
                     /gene="aroG"
                     /locus_tag="PXE92_001926"
     CDS             complement(7832..8914)
                     /gene="aroG"
                     /locus_tag="PXE92_001926"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HDL5761141.1"
                     /translation="MSYIKNDDVRITSIEELLPPIALLEAYPASDVAAETVAKTRQSI
                     HKILHGADDRLLVVIGPCSIHDPKAALEYAQKIKAMRADPKINQNLEVVMRVYFEKPR
                     TTVGWKGLINDPYLNETFALNDGLRIARKVLSDINDLSVPTAGEFLDMITPQYVADFM
                     SWGAIGARTTESQVHRELASGLSCAVGFKNGTNGSVKIALDAISSAKSPHHFLSVTKF
                     GHSAIVSTAGNPDCHIILRGGDSATNYDADSVAAACAAIEKSGGRPHVMIDFSHANSQ
                     KQFKRQMDVCADVCNQIAGGSDFISGVMIESHLVEGRQDLIEGKGLEALVYGQSITDG
                     CIGWEDSEKALFALAEAVEKRRNFAK"
BASE COUNT         2488 a         1987 c         1887 g         2595 t
ORIGIN      
        1 tttagaccaa ttagaagaaa aaattaaaca agctgttgaa actattcaat tacttcaatt
       61 agaagttgaa gaattaaaag gtaaaaacga tgcagcgaaa caagaaaacg acaccttgcg
      121 cagcgaatat gaacaattaa aagtggaaca acaaaacttc caagatcgtt tacgttcact
      181 tttaggtcaa atcgacaacg tttaattcta ttttcagcac aaacggctaa atttttagcc
      241 gttttttatt tgttacagct atggcaaaac tctattttta ctactcctca atgaatgcag
      301 gcaaatctac tactctgctt caatcttctt ataattacca agaacgtgga atgaacactt
      361 tagtttatac cgccgctatt gatgaccgtt tcggtgtggg gaaagtcaac tctcgtatcg
      421 gtatttcaca agaagccaat ttatttaccg ctgataccaa tctatttgcg gaaattaagg
      481 cattacactc aaacaaagcg ttacactgta tcttgattga tgaggctcag tttttaacta
      541 aaacacaggt ttatcaatta agtgatgtgg tcgataaact caaaattccg gtgctttgct
      601 acgggctacg caccgatttc caagctgaat tatttgaagg tagcaaatat ttgttggctt
      661 gggcagatga gctggaagaa ctcaaaacca tctgtgattg tggcaaaaaa gcccattttg
      721 tcgttcgatt aaatgaaaaa ggcgaagcca ttaaagacgg tgaacaaata caaatcggcg
      781 gcaatgatag atatctctct gtttgccgtt atcattacaa acaaaagtta ggtaagctat
      841 aagctacaag aagcagcaag cggttaaatt ttcgggaatt tttgcaaatt ttcagcgaaa
      901 tttaaccgct tgtttgtgtt atttacctct ctttactttc ctgcaaaccg aatttgctca
      961 ctcatttgtc tcatcacact cgaagtctcg gcaaaaaact gttggtaaga ggggcaaagg
     1021 tagttgtggt tttcgctgtt tgcttggggg acgatgcggt gtttggggca gccgccgtgg
     1081 caaagtatgc ggaatttgca gtttaggcag gcttgcgaga gttttgcctg tttattctgc
     1141 ccgaattggc gttgggcggc tgatgagacg atctctgcca gctgctgttg gttgaggttg
     1201 ccgatgtggt aatcgggata gacgaaatgg tcgcaactgt acacatcgcc acaggcttcc
     1261 accaccagcg agctgccaca ggtcgggcgg aatacacagt tgttggaggg atagccaagc
     1321 cattgcccga gcaggttatc aaactcgatc acaaaaatct gcccacggtc aggcagccat
     1381 tcgtgaaaaa catccactaa aaattgcccg tagccttggg gcggaacgga aaagggttgt
     1441 aattccccct tgtggctttc caccaccgga atgaactgca tataacggct accgagggct
     1501 ttgagggctt gataggtttc tctgccccgt tgccagttgc ggtcgttcac caccgtgagg
     1561 gtgttaaatt ccacgccaac ctctttcaat aaatcgaccg cacttttcac ccgttcaaag
     1621 gtcggtttac cgttggtgga aatgcggtag cggtcgtgaa tgtcgctcag tccgtcaatg
     1681 gataagccca ccagaaaatg attctctttg aaaaagctcg cccactggcg gtttagggca
     1741 atgccgttgg tttggattgc gttggtgatc tgcttgccgt ttgcaaattt ttgttgatat
     1801 ttgaccgctt gtttgtagaa atctaagccc agcagggtcg gctcgccccc ctgccacaca
     1861 aaatccaccc gttggctttg gttggcttca atgtaatgac gaatgtagtt ttgcagcgtt
     1921 tcatcgttca taaactgcga tttttctggc ggaatggtct gttccttgct cagataaaaa
     1981 cagtactcgc actgaatatt acagtgaaaa ctgctgggtt ttgccattag gtggaagtag
     2041 gtggtggtca ttgtatctct aaattgtagg ggcggacttt atgttcgccc attgtttaca
     2101 ttaattttcg ggcgggtata aaacccgcct ctacaaacaa ttatatctca tcaataatcc
     2161 gatacaccca attttccagt gggtcgttga ggcgtttcat ttcctgtcgc atttcttcca
     2221 acatctcttt tttcacggct tggtaggctt cgtcataaaa gaggttgtgc atctcttcgg
     2281 ggtcttttct gacatcgtag agttcgcagc ggtcggtggc gttgaagacc aatttgtaat
     2341 ccttacgccg ccacattcgc tgttcaaaat agacaaaatg ccctgccagt tggcacaaca
     2401 agcctttgcg gtcgttgttt tggctttgtc tggttatcgg cagaatactc tcgccttgga
     2461 aagcggtcgg gatcggttga tttgccacat catacacggt ggaagtgaga tcgtgcaaat
     2521 aaacgaggtt gtcatcgact tcgttcaccc ttgtagagtg cggatcttta ataatcagcg
     2581 gaatgttgta ggtggtttca aacataaact cgcctttttc gatcatctta tgcgccccca
     2641 tcgcatcgcc gtggtcggcg gtagcaacga ggaaggtatt ttcatagaga ttgttctctt
     2701 ccaagaaacg gaacagctcg ccaatggcat cgtcaatcag cgtgatgtag ccccagaatt
     2761 tagaaatcac ctctttccaa cgatcttcgc tcgcctccca cattccccac atttgtgaaa
     2821 tggtgcggaa gtggttcggt ttgccctcaa gcggtttgaa gaaactctcg tccaatacca
     2881 cttggcttgg gtcatacatt gaataatacg gctccggcac tacacacgga gtgtgcggcc
     2941 cccagaagtt gatccacgca aagaacggtt ttttctcatc aagggaggct tgaatgtatt
     3001 ttttcgcctc gtcaatgata aaccactcta ttgtctgctc gcgactgccg gaaagcaaac
     3061 cacagagttc ctgcacacgc aggtgtggat tgtcgccaaa ataggctcga ctgacttcgg
     3121 gtgcgtcata gcccttttcc gccagccatt cacgataacg gttggagtgt gttggcggct
     3181 gattaaacac gaggttttta tacacttggc tgcccgggta gccatagccg tcaaagttat
     3241 gaccggcgat gccataatct tcgggaacgg attttgtacc aacgtgccat ttgccgatca
     3301 caaaggagtt atagccctcc acgccggcaa tattagggtt ttgttgtgga atttcgcctg
     3361 tgccgccttt ttcgccgttt ttgataatcc cgtggctgga cggcattaag ccggtaaaca
     3421 gcgaggtgcg agccggcccg cagaccgaag ccggcgtaaa ggcgttgtta aaccgaatgc
     3481 cgtctttcgc caagcgatcc aaattcgggg tttttaccac ctgatgcccg taagtgccga
     3541 gcatatcttt acgcacttga tctaacaaaa tatagatgat gttattcata atgacctctt
     3601 taaggcttgt taataaccga taaattatca agtttcggag atctgttccc ctctttagca
     3661 aagaggggat ttttgatctc gagccttttc cgttcttggt atttttatac taatgaggag
     3721 aaggctcaca ttcatttaat tcaccgcctt tttgccttta cattttgcaa aaaacacgac
     3781 acaaaccacc gcttgtagca cagcatacac cgccagcacc attgccggat tgccgtctgg
     3841 tgaggctaaa ccgagcggag agaggaaagc gtatagcgtg aataagccca acacgataga
     3901 agccactgcc agtggggcat attcccagct ggttaagtcc acattggcgt ggttgatttt
     3961 gttgtcttcg tatggagtcg cacgttttag gaaaattcct aaaatcagca ttaacgccac
     4021 atcgaacacg aacaagccag cttgcacata cacgaagttg atttttacat caaacaccca
     4081 aacgatgcag aagtagagaa taacgtgtgc gagtaaggca atgcgtgcgg ctttgcctga
     4141 gacggttttg ttgaataagc cgatgacaaa cagtgccaca atcggaatgt tcacaaaacc
     4201 ggcgaaacgt ttggtcagca agaaaatacc gtctgtgccg aacatcagta acggcccaaa
     4261 gatcatcgta atcaccgcca ttaccgcaga gacttttttc gcataactta tcagttccgc
     4321 atctgtgaac tgttttttgc tgatagacgg cagtaagtct ttacagtaaa tggttgccgc
     4381 tgagtttaag aacgagttga aggtactcaa aatcgccccg aacagtgcgg caataaagaa
     4441 gccttgtagc acggttggga aagttttatt cactaattca gggtaagaca catcaatcgg
     4501 tttcaagccc tcacctaaaa tatggaaact gagtaagccc ggtaagttta agataagcgg
     4561 tagcaataat aagaacagtg ccgcaattaa gatccctttt tgaccggctt ttaagtctct
     4621 cgcccccaag gcacgttgca caatggcttg gttggtcgtc cagtagaaga aatgcaccac
     4681 cataataccg gtgaaaatgg tcggccaagg cactgcatcg gtggcactac ccaccgcatt
     4741 ccatttttca acgtgagtag tggtgatgat tttcacccct tctgccatac tgccattacc
     4801 taaatagata agtgcaaaca ccggcactaa taatgcccca atgactaaca agaccgcatt
     4861 ccaagtgtct gacaccgcca ccgcttttaa gccaccgaaa atggcataaa tcgccccaac
     4921 aataccaatc gcaatcaccg tataggtaat cgctgcccca tagcttaagc cgaaggcagt
     4981 ttcaaggttg aagattttat tgaaggcaat cgcaccggtg taaagtgcag tcggaatgac
     5041 gatgaaaaga tagaacacca aaaacaagcc cgacataatc aaacgggttt ggcggtcgaa
     5101 acggttttca aagaactccg gaatggtggt ataaccgttg cggatatatt tcggcaacag
     5161 ataaagtgcc aagaagcaaa gcggaattac cgccggcaca gtccacgcaa taattgagaa
     5221 attaccggca taagagttgg cattcacgcc gataagttgc tcggtagaaa gggaggttaa
     5281 gaccatcgaa cagccgataa ccgtagcact caagccacgc cctgccaaga aataaccttt
     5341 agatgtcgaa agatcgtcgt ttctggtttt tagccaagag atatacccga ctaatccagt
     5401 tacaaccaga aaggtaatta ttgttaataa catattcttc acctcaatat gactatataa
     5461 atgatatatc ccattagaga cggcaatagc ataaatctta tttttaacga tagaatatga
     5521 tgtttgtcat aatagatatg tgatggtgat cacaactatg aataatttat gacaatttaa
     5581 ctgattttct ttaattctcg ccttaatcga atggctgttt cggtttcaca acctgcaaat
     5641 tcggcgattt cacggttagt ccagtgataa ttgggataac gttggtgtaa ataatgaata
     5701 ctgttcatta cccgctcttg cgttttttga taggaaacca ttgataaacg atgctctgcg
     5761 tcttgtaatt ctgtcgagag ctgttttaac agagagataa ttaaggcgga attattcgac
     5821 caaaactcaa tgaaatttaa gggggtaata cgtatcaatt ctgccggctg taacacccga
     5881 gccgagcaat ggtagcgatt atcgccaaaa aaggttctaa acccaaaata atcgttggct
     5941 ttatataccc tcaccaagct ctctttacca ttttcaagca tatggtacag ccctattaat
     6001 ccgcttttta aaaaataaaa ttctctggcg tgataaccct gagaataaat gacgactcct
     6061 ttttctagat cagacattac acttaattgg caagacatca attgttcggg ggttggcata
     6121 ttgttcattg attatcctta ttattttatt ttttccatat atgattgcga tcataatcct
     6181 ttatttagaa aattttgcat acttatcaca ctttaggaga tggattatga caatgaccgt
     6241 gataattatt ttgatcattt gtggcattat agtcaatatc acttctgcac tatttgggat
     6301 tggcgggggt gttttaatga tgccgatttt acattcactg tttcctgaac tgcctctcca
     6361 agtgatttcc gcctgctctc ttaccattgt gattggttca gccactatca atttatgctt
     6421 attccaccat caacagataa aaatcaatcg aaaaaatgtg ttgatttggt cacttgcgat
     6481 gatgttaggc gtacaaattg ggtttgaact cagttttctt ttctctgata acagcattat
     6541 cgctatcttt attctaaccc tgctgacact ttcatttaaa accctatttc acaaaccaag
     6601 agttaaagca atagtaccac ctaaaccaaa agaagcagta tctaatgcca caatgtgcag
     6661 tttaggcggt ttaattgcag gtattaccgg cattggcggc ggttcgatta tggctccgat
     6721 tgtcacgcaa atacgctcgg tttcaccgaa acaggttgca gtttatacta actatatgat
     6781 ggtgattggc ggaatcggca atttatatgg ctacttatcc cgcccttttg tgttgaattc
     6841 aaccttagca acttggcaaa tcggctatgt gaattttgca attgtcggca ccgtagtgat
     6901 aagttctctc tttactgtct atttttcaat gaaattacgc aatatcttga gtcccgaatt
     6961 aactactaaa ttacttggtg taatcctatt cactattgcc tgttatatgg gctttttgca
     7021 atatttattc acttaaccat aagttcaata gattattgct tatgaggtag tttttcccaa
     7081 gtaacttcat tacgcaaata caccggttct atttcaaaag cagattggat attgcctttt
     7141 tgaatctcag tttcagcaat cgaaagcata tatcggctgg aaggcaaggt aatatcactg
     7201 ataacaagcg gtagattttg ctcagaaaat tgcgaatatg ccgcccaacc tgtgccaacc
     7261 accacagtct cttcactcat ttggaattga cttattgcga cttctggcga acagacttgt
     7321 tcagccacca cttcattcca ttcttcaccc tttcgttcaa attgagcaaa gtaaacttca
     7381 ttcattcggg catcaattaa ggcaattacc tttgttgcac ctaatttttg gtatgcttct
     7441 tctgccattg cttttaagtt agaaacagct accaccggca aattcgctcc cattgccaac
     7501 ccttgtgcca cacttacacc gaccctcaca ccggtaaaac tgcccggccc acgtccgaat
     7561 actaaataat ttacttcttt gagttcgata ttggcttgat taagtaattc atctaccatc
     7621 ggcaaaatac gttgagtatg ggaacgaggg ctgatttcat ctaagaacgt gatatttccg
     7681 ttatactgta acgctacaga gcaagcctct gttgcagtat ctaaagcaag aatgctgggt
     7741 ttcatcatat gtttagtttg aataaattaa atttgcttta aggttaaaca aataaagggc
     7801 gaattatatt cgccctcggt tcaagaaaag attattttgc aaaatttctg cgcttttcaa
     7861 ccgcttcagc aagtgcgaat aacgcttttt cactatcttc ccagccaatg cagccgtctg
     7921 taatactttg tccgtaaact aacgcctcta aacctttgcc ttcaattaag tcttggcgac
     7981 cttctaccaa gtggctttca atcatcacac ctgaaataaa gtctgatcca cctgcaattt
     8041 ggttgcacac atcagcacaa acgtccattt ggcgtttgaa ctgcttctgg ctgttagcgt
     8101 ggctgaaatc gatcatcacg tgtggacgtc cgccggattt ctcaatcgca gcacaagccg
     8161 ctgcaacgga gtcagcatcg tagttggttg cgctatcgcc accacgcaaa ataatgtgac
     8221 agtcaggatt tcctgctgtt gaaacaatcg cagaatgccc gaatttagtg accgataaga
     8281 aatggtgtgg cgattttgcg gaagaaattg catctaatgc aattttcaca ctaccattcg
     8341 tgccgttttt aaaacctacc gcacaggata aaccagaggc taattcacgg tggacttgag
     8401 attcagtcgt tctcgcccca attgctcccc agctcataaa gtcagccaca tattgtggtg
     8461 taatcatatc caaaaactcg ccggcagtcg gcacgcttaa atcattaata tcagataata
     8521 ctttacgggc aatgcgtaaa ccatcgttta aggcaaaggt ttcgttcaaa taagggtcgt
     8581 taattaagcc tttccaacca acggttgtac ggggtttttc aaaatagaca cgcatcacca
     8641 cttctaagtt ttggttaatt ttcggatcag cacgcattgc tttaattttt tgtgcatatt
     8701 ctaatgccgc tttcgggtcg tgaatggagc aaggtccaat caccactaat aagcgatcat
     8761 ccgcaccgtg taaaattttg tggattgatt gacgggtttt agcaacggtt tccgctgcaa
     8821 catcacttgc cggataggct tccagtaatg caataggtgg tagtaattct tcaatactgg
     8881 taattctgac atcgtcattt ttgatataag acattgtgtt cactctctaa ataaaatgaa
     8941 aataaaatcg tactatc
//
LOCUS       DANMBQ010000098         8468 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.098, whole genome shotgun sequence.
ACCESSION   DANMBQ010000098 DANMBQ010000000
VERSION     DANMBQ010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8468
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.098"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(58..522)
                     /locus_tag="PXE92_001927"
     CDS             complement(58..522)
                     /locus_tag="PXE92_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL5761142.1"
                     /translation="MQQLIKNIEQWAEDRNLINGSTPQKQMLKLMEEFGELCGGIARN
                     NPEMIKDAIGDLIVVCIIKAKQEKQPIYPVQFENHRLNGYRFDISVAVHCLYDIERIK
                     DRGKYSRFFGILHHLALINRFTLNDCLAHAYDQIKDRKGEMQAGIWVKEDDL"
     gene            complement(506..709)
                     /locus_tag="PXE92_001928"
     CDS             complement(506..709)
                     /locus_tag="PXE92_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761143.1"
                     /translation="MTDTERLDFIAQRKLDVRYSDLVDEFIIASYTKPHEQYFHWARN
                     ADLRTAIDEAMKEMRGLNNATTN"
     gene            complement(706..1233)
                     /locus_tag="PXE92_001929"
     CDS             complement(706..1233)
                     /locus_tag="PXE92_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL5761144.1"
                     /translation="MNEEKYFSVDVSDETHVIRLHETLEQAKQSCLNGATEAYEFAGD
                     MDDHESYESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERASELFGEAEQVIEPPTLLE
                     NNGWISIEDKLPPIETDVLGLCDISGMQLILIVSRELADNEWYFLSVNQYGLDDDVIA
                     VTHWQPLPEPPKEEK"
     gene            complement(1311..1763)
                     /locus_tag="PXE92_001930"
     CDS             complement(1311..1763)
                     /locus_tag="PXE92_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL5761145.1"
                     /translation="MKPFDLNKALAGEPVKLRNNDKAFVKYLISDDYIRDNKDHQVQG
                     YTVDEENVFLSEVSWAVSGSHFNDGTIAQYDIVGMWEEPRPAVTLTLPCPLKEPQENM
                     WFIDNDFTIVKSMFANAPFVKKFLPQGRCFASEEDAQEWLDAMRNSRR"
     gene            complement(1784..1960)
                     /locus_tag="PXE92_001931"
     CDS             complement(1784..1960)
                     /locus_tag="PXE92_001931"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761146.1"
                     /translation="MTTQKKYELLQNDTINHNGRTLYRIKAICHFRRTAEYSARATHA
                     TAAECYGGIACTST"
     gene            complement(1973..2608)
                     /locus_tag="PXE92_001932"
     CDS             complement(1973..2608)
                     /locus_tag="PXE92_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HDL5761147.1"
                     /translation="MTGDLIILDCEQGSEEWLNARLGIPTATGIENIVTPSGKKSSAW
                     NSYLAELVAESIEGAKDGFKSSDMARGNELEPLARMAYEFETDTEVVQVGGVYLNAEK
                     QLMVSPDGLIPNLKKGLEIKCPKMKTHIKYLLEGGVPNEYLIQVQSALWVTGYETWDF
                     VSYCPEYQKQPLYIYTAERDPVLMKAFDQYIPQFIKSLYALKGVTAPKGAF"
     gene            complement(2605..3399)
                     /gene="bet"
                     /locus_tag="PXE92_001933"
     CDS             complement(2605..3399)
                     /gene="bet"
                     /locus_tag="PXE92_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage recombination protein Bet"
                     /protein_id="HDL5761148.1"
                     /translation="MTTALQTLTNKLAERFEMGDGSGLVETLKSSAFAGATVSDAQMI
                     ALLVIANQYQLNPWTKEIYAFPGGNGGLTPIVGVDGWVRIINREPQYDGMEFHFTDDY
                     SACTCTIYRKDRSKPIVVTEFMGECKKSSPAWNSHPKRMLRHKAMIQCARLAFGFTGI
                     YDQDEAERIAENEKPPKNITPQNNVVETTAVELISEEQLSQIRQLMQVTGTEEAKILA
                     YIGVQALNQIPKSQAEAVIKKLNLTLDKQNAEKADNGESVGEEIPL"
     gene            complement(3440..4390)
                     /locus_tag="PXE92_001934"
     CDS             complement(3440..4390)
                     /locus_tag="PXE92_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761149.1"
                     /translation="MTTANQQFELILKTESRVVSTNLQTFEEQANQYLATLTTTFETD
                     DDFAKAKEEVKELESIEKKIRDAIKQTQTGEIAELVLTAEQIAERFRQERLTRDKLVK
                     SKETEIKKQIADKAIEEITDTRNKLVKVSDISLALEITMPKHGIANRIAEAQKNKRTI
                     DSLTKAVNAEKALIISEMSVEIGRLTERLEQLAAKSAYLFPDAVKLIATQDDLAPIIQ
                     QRLAEEAEREAAIKAKAEADKVQAEAKAITDKMERKQAVENPQNVAKMNIEEPAQTDG
                     PLGDFIITIRLNQTIQTNAVSIARELKAKFGDSVSLNKAK"
     gene            complement(4403..4615)
                     /locus_tag="PXE92_001935"
     CDS             complement(4403..4615)
                     /locus_tag="PXE92_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761150.1"
                     /translation="MIGYEDYTDASLQPEEDPSEEAFILAEENIIELLENNGFETIAT
                     ILAGSDGWRNAINAYLAEQNKHRNEF"
     gene            complement(4749..5228)
                     /locus_tag="PXE92_001936"
     CDS             complement(4749..5228)
                     /locus_tag="PXE92_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761151.1"
                     /translation="MKRNKVESYTIRLLKNNHTKRYFGEVILNGIKEISTAEMMSEIN
                     AIKAVNKRIEALNKTKAVNLPNYPEIRGHQPIMYNYNFEQIEEDPEQVKPKPSKPKRK
                     PFIPYGLNGYFVDSNGNIRLHLDRRASAETITLETDFFNVLAEMVKRTQEANNAKHA"
     gene            complement(5225..5584)
                     /locus_tag="PXE92_001937"
     CDS             complement(5225..5584)
                     /locus_tag="PXE92_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761152.1"
                     /translation="MTTFSIYTSVWHDSSTKGFRHNIKHKRHDCWRADIRIKQKINDV
                     WVQISRIRKRFKCPEQAKSFVEQWKQIDSPAFMQHQINRQALREELSNLEQRKQKQDG
                     ILEVIEYRISQIKELLK"
     gene            complement(5588..6094)
                     /locus_tag="PXE92_001938"
     CDS             complement(5588..6094)
                     /locus_tag="PXE92_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761153.1"
                     /translation="MKTKYKIIIERAKQQGLTHIELTQKHCLYLATSVGKLCYGVANN
                     AEQHIKLAAGEIFTLLTIINHQIQFDEDLELHTWKASGTTPPEQRAIRMLHHTSQFAW
                     FAPWLVDSNEKEQNQNTIRINLFNKCSGILIELNGILKEYELTLDECLDEFLKNKHCL
                     NEFSIHKE"
     gene            complement(6281..6356)
                     /locus_tag="PXE92_001939"
     tRNA            complement(6281..6356)
                     /locus_tag="PXE92_001939"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6321..6323),aa:Arg,seq:tct)
     gene            complement(6663..6899)
                     /locus_tag="PXE92_001940"
     CDS             complement(6663..6899)
                     /locus_tag="PXE92_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761154.1"
                     /translation="MSNQEFVKLGSVEPSTIDELQKEDIRQAILKSVSITPYYVGLEI
                     AVCQAISAINKFSDGCITEELLDTKNGDKYRKNN"
     gene            complement(7281..7511)
                     /locus_tag="PXE92_001941"
     CDS             complement(7281..7511)
                     /locus_tag="PXE92_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761155.1"
                     /translation="MNAQATLNNHKDYILCGRKEKRTSDFINVFEVFENEATQEFVIE
                     RAMFRNGKLIDWNQSDKMNAEQAQQLWQAYIH"
     gene            7803..8078
                     /locus_tag="PXE92_001942"
     CDS             7803..8078
                     /locus_tag="PXE92_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011039853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5761156.1"
                     /translation="MIKSFKHKGLKQYFEKGITKGIQLNHQRKIDGILDLIDSAESID
                     EFMPFYQCHELKGNRKGIYSMTVNGNWRITFEFVNGDAYILNYEDYH"
     gene            8087..8392
                     /locus_tag="PXE92_001943"
     CDS             8087..8392
                     /locus_tag="PXE92_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HDL5761157.1"
                     /translation="MRKPAHPGQILLDGFIEPNNIKIKELADHLGFSRETLSRVLHGK
                     TPMTANLALSLEEAGISTAKLWLNLQTKYDLWELKQQRLNPVMPFHFGGNYGETAHA"
BASE COUNT         2128 a         1702 c         1688 g         2950 t
ORIGIN      
        1 cttatagagt ggcggaatgc ttttctgcaa gatgtttcgg tttttatagc ttaggtacta
       61 taaatcgtct tctttaaccc aaatcccagc ttgcatttcg cccttgcgat ctttgatttg
      121 gtcgtaggcg tgagcgaggc agtcattaag cgtaaatcta tttattaagg ctaaatggtg
      181 taatatgcca aaaaaacggc tatatttacc tctgtcttta atgcgttcaa tatcatatag
      241 acaatgaaca gcgaccgaaa tatcaaatct gtaaccattt aatctatgat tttcaaattg
      301 tacagggtaa ataggttgtt tttcttgttt tgctttaata atacagacaa caatcaaatc
      361 cccaatcgca tctttaatca tttcaggatt attgcgggca atgcctccgc agagttcgcc
      421 aaactcttcc atcagtttga gcatttgctt ttgtggggtt gagccgttaa ttaaattgcg
      481 gtcttccgcc cattgttcga tgtttttaat tagttgttgc attgtttagt cctctcattt
      541 ctttcattgc ttcatcaatc gccgtgcgta aatcggcatt tcttgcccaa tgaaaatact
      601 gctcgtgcgg tttggtatag ctagcaataa taaattcgtc caccaaatca gaatatcgga
      661 catctaattt gcgttgggcg ataaagtcta agcgttcggt gtcggtcatt tttcctcctt
      721 tggtggttcg ggaagtggtt gccagtgggt tactgcaatc acatcgtcat caagcccata
      781 ttgatttaca ctaagaaaat accactcgtt atcggcaagt tctcttgaaa ctattaaaat
      841 taactgcatt cctgaaatat cgcataaccc tagcacatcc gtttcaatag gtggtaattt
      901 gtcctcaatg gaaatccagc cgttgttttc taaaagtgtt ggtggttcaa taacttgttc
      961 agcttcccca aataactccg atgctctttc ttcgtctgtt agtggacgaa tatctgattt
     1021 tgctctacct aaaacaacac cataaactgc atagggtaaa tcataggctt catagctttc
     1081 atagctttcg tgatcatcca tgtcacccgc aaactcatag gcttcagtag caccatttaa
     1141 acagctttgt tttgcttgct ctaatgtttc gtgcaacctt attacatgtg tctcatccga
     1201 gacatcgacc gaaaaatatt tttcttcatt cattttcttt ctccgcgttc cgtgtttatg
     1261 tggatataca agaaattcaa cagcagcatt cagctgttag tgctgccgat ttacctacga
     1321 ctatttcgca ttgcatctaa ccattcttga gcgtcttctt ctgaagcgaa acatcgccct
     1381 tgtggcaaga atttttttac aaagggggca tttgcgaaca tagattttac tatggtaaaa
     1441 tcattgtcaa taaaccacat attttcttga ggttctttta atgggcaagg taacgtcaat
     1501 gttactgctg gtcttggttc ttcccacata ccaacaatat catattgagc tattgttcca
     1561 tcattgaaat gagatccgct aacagcccac gatacttctg acaaaaatac attttcttca
     1621 tcaactgtat acccttgtac ttggtggtct ttattatctc taatatagtc atcactaatt
     1681 aggtatttta caaatgcctt atcattattt cttagtttta ctggctcacc tgccaatgct
     1741 ttatttaaat caaatggttt cattttattc tccgtgtttg tggttatgtt gatgtacagg
     1801 caattccacc atagcattca gcggctgtgg cgtgagtggc tcttgcggaa tattcagccg
     1861 tccgcctaaa gtggcatatg gctttgatgc ggtagagtgt tctgccgttg tggttgattg
     1921 tgtcgttttg gagtagttcg tatttctttt gggttgtcat attggctacc tattaaaaag
     1981 cccctttcgg ggcggttacc cccttcaatg cataaaggga tttgataaat tgcgggatat
     2041 attgatcaaa ggctttcatc aataccggat cacgttcggc tgtgtagatg taaagcggtt
     2101 gtttttggta ttcggggcag tagctgacaa agtcccacgt ttcgtagcct gttacccaaa
     2161 gggcagattg cacttgaata agatattcat tcggcacacc gccttctagc aggtatttga
     2221 tgtgggtttt cattttcggg catttgattt ccaacccttt ttttagattg ggaattaagc
     2281 cgtcaggact taccattaac tgtttttcgg cgttaaggta cacaccgccg acttgcacga
     2341 cttcggtgtc ggtttcaaac tcgtaagcca ttcgtgcaag cggttcaagc tcgttgcctc
     2401 gtgccatatc agacgactta aaaccgtctt ttgctccctc aatgctttcg gcaaccagtt
     2461 cggcaagata gctattccaa gcggacgatt ttttaccgct tggcgtaacg atattttcaa
     2521 tgcctgtggc ggtgggaatg cccaatctgg cattgagcca ttcttctgat ccttgttcgc
     2581 aatctaaaat gattaaatcg cctgtcatag tgggatttcc tcaccgacac tttcgccatt
     2641 atccgccttt tcagcgtttt gcttgtctag cgtaagattg agctttttaa tcactgcctc
     2701 tgcctgcgat ttagggattt ggttcagtgc ttgaacgcca atataggcga gaattttcgc
     2761 ctcctccgta ccggttactt gcattaactg ccggatttgc gacagttgtt cttccgaaat
     2821 gagttcaacg gcagtggttt ctaccacgtt attttgtggt gtgatgtttt taggtggttt
     2881 ttcattttcc gcaatacgct ctgcttcgtc ttggtcgtaa atacccgtaa agccaaaggc
     2941 taatcttgca cattggatca ttgctttatg gcgtaacatt ctttttgggt gagagttcca
     3001 agctggagag ctctttttac attcccccat aaattccgtc accacaatcg gtttacttct
     3061 atctttacgg tagatagtac aagtacaggc ggaatagtca tcggtaaaat gaaattccat
     3121 tccatcatat tgaggctcac ggttaataat gcgaacccaa ccatcaacgc cgacaatagg
     3181 cgttaatcca ccgttcccac cggggaatgc ataaatttct tttgtccaag ggtttaattg
     3241 gtattggtta gcaataacca atagtgcaat catttgagca tcgcttacgg ttgcccctgc
     3301 gaaagcagac gatttaagtg tctcaactaa tcctgagcca tctcccattt caaaacgctc
     3361 ggcaagtttg ttggttagtg tttgtaatgc agttgtcata atatgatcct tatttaggtt
     3421 gaatttgtgc ggtatcaaat catttagcct tattgagcga aacgctatcc ccaaatttcg
     3481 ctttcagctc acgagcaata ctgactgcgt tggtttggat tgtttggttt aagcgaatag
     3541 taatgataaa atcgcctaat ggcccatcgg tttgtgccgg ttcttcgatg ttcatttttg
     3601 ccacattttg cggattttcg accgcttgtt tgcgctccat tttatcagta atcgctttgg
     3661 cttcggcttg tactttgtcg gcttctgctt tggctttaat cgccgcctca cgctcggctt
     3721 cttcggcaag gcgttgttga ataattgggg cgaggtcgtc ttgggttgcg atcaatttca
     3781 ctgcatcagg aaaaagataa gctgattttg cagcaagctg ttctaatcgc tcagtcaagc
     3841 gcccgatttc taccgacatt tcgctgataa tcagcgcttt ttcggcgttc acggctttgg
     3901 ttaagctgtc aatcgtgcgt ttatttttct gtgcctcggc aatacgatta gcaatgccgt
     3961 gttttggcat tgtgatttct aaggcaaggg aaatatcact tactttaacc agcttgtttc
     4021 tggtatcagt gatttcttca atggctttat cggcaatctg ttttttgatt tccgtttctt
     4081 tgctcttaac gagcttgtct cgggttaatc gctcttggcg gaaacgttca gcgatttgtt
     4141 ctgctgttaa taccaattcc gcaatctcgc cagtttgcgt ttgtttaatt gcgtcacgaa
     4201 tttttttctc aatgctttca agctccttca cttcttcttt tgcttttgca aaatcatcat
     4261 cggtttcaaa ggtggtggtg agcgtggcaa ggtattgatt tgcttgctct tcaaaagttt
     4321 gcaagttggt agaaaccact cggctttcgg tttttaaaat aagttcaaat tgttgatttg
     4381 cagttgtcat tttcttattc ctctaaaatt catttctgtg tttgttctgt tcggctaggt
     4441 aggcgttgat tgcgttacgc cagccatcag aaccggctag gatggtggca atggtttcaa
     4501 agccgttgtt ttctaatagc tcgatgatgt tttcttcagc caagatgaaa gcctcttcgc
     4561 tagggtcttc ttctggttga agtgaagcat ctgtgtagtc ttcgtatcct atcatcacac
     4621 tttctccgtt actttaaatt cgcaagtttc aggcttgcag gtgctttcag ggataagctc
     4681 ttcattgcat taggagggtg atggcaacca taaaaagcag ggcgtataag ccgtatttaa
     4741 tccattgtct aagcatgttt agcattgttt gcctcttgtg tacgttttac catttcggca
     4801 agaacgttga agaaatcagt ttcaagggta attgtttcgg cacttgctcg tctgtctaga
     4861 tgtaagcgaa tattaccgtt gctatccaca aagtagccgt ttagcccata aggtatgaat
     4921 ggcttgcgtt ttggttttga tggtttaggc ttaacctgtt caggatcttc ctcaatttgt
     4981 tcaaaattgt aattgtacat aataggctga tgaccccgga tttcaggata attaggcaaa
     5041 ttaacggctt tggttttatt cagagcttca atgcgcttat ttactgcctt aatagcgtta
     5101 atttcagaca tcatctctgc cgtgctgatt tcttttatgc cgtttaatat aacttctccg
     5161 aagtagcgtt ttgtatgatt attttttaat aagcggatag tatagctttc tactttattg
     5221 cgtttcattt cagcaactcc ttgatttggc taatacgata ctcaatcacc tcaagtattc
     5281 cgtcttgctt ctgtttgcgt tgctcaaggt ttgataattc ttctcttaat gcttggcggt
     5341 tgatttggtg ttgcataaat gcaggtgaat caatttgttt ccattgttct acaaaggatt
     5401 ttgcctgttc agggcacttg aagcgtttgc gtatccttga aatctgcacc cacacatcat
     5461 tgattttttg ctttatgcgg atatccgctc tccagcaatc gtggcgttta tgcttaatgt
     5521 tgtggcgaaa gcctttcgtg gagctgtcgt gccatacact ggtataaata ctaaacgtcg
     5581 tcatttttta ctccttgtga atactaaatt cattcaaaca atgcttattt ttcaagaatt
     5641 catctaagca ctcatcaaga gttagctcgt attctttaag aatgccattt agttcaatca
     5701 gaatcccaga gcatttgtta aataaattaa tcctgattgt attttggttt tgttcttttt
     5761 cattgctgtc cactaaccaa ggagcaaacc aagcaaattg cgaggtatga tgtaacatac
     5821 gtatcgctct ttgctcgggt ggggttgttc cactagcttt ccacgtgtga agctctaagt
     5881 cttcatcgaa ctggatttga tggttaatga tcgttagtag tgtaaaaatc tctccagcag
     5941 caagtttaat atgttgttct gcattattag ctaccccgta gcacagtttc cctactgatg
     6001 tagcgagata cagacaatgt ttttgagtaa gctcaatatg ggtcaaaccc tgttgttttg
     6061 ctcgctcaat aataattttg tatttagttt tcattttgaa tccttttatg tggataaaaa
     6121 aagccccgca cgaggcgggg aaacggagtc attatgttta ttatcaaccg ctctttttaa
     6181 gttgtagcag ttacacaact tagccattca aaaccgctct acacggtagg tttccacttc
     6241 gtaggctcgt catcgatgat gtgcgtaaag cggttttgga tggcgaccgc agagagattc
     6301 gaactctcga cccactgctt agaaggcagc tgctctatcc actgaactat gcggtcaaag
     6361 taccgttgct taaccccaac ggcagggctt acttcaatct aaggaatgtg atggactaac
     6421 catctctaac aactctctag tacattcgtt tcgctgccta acgccgactt tagaaaacat
     6481 taaaactaaa acggggttat ttgtctcact ctctgttgag agctgttaga gatggtggct
     6541 cttttttata cttgtgagcc accgggccaa gtcctcttgt ttgccacaac ttcgaggaat
     6601 ataatacttg ggcaacatct agggctaatg ccgaaaaaat gaaatcactt tggtgttatt
     6661 gattagttat tttttcggta tttatcacca tttttcgtat ctaaaagctc ttctgtaata
     6721 cagccatcac taaatttatt gatggctgat attgcttggc aaaccgctat ttccagcccc
     6781 acataatatg gcgttataga gacggatttt aatattgcct gcctaatatc ttctttctgt
     6841 aattcatcaa tcgttgaagg ttcaacgctg cctaatttaa caaattcctg attactcatt
     6901 ttgttctcct gttattaata ttccaaagca cactttctca aatatgcttt ggaattgaac
     6961 cagcgtttgt gcttcccgat tcactgccag tgcttaacct ttccgctagt tcgcacatca
     7021 ccagtaaatt cgccacaact accgtactat tctttcagtc cgagtagctt agagagtttc
     7081 acaacttgcc tataagttca tttaccgcat acgttttacc gctttatgca aagattggtt
     7141 ctgtctctcc aatgtcatta cattgctaag taatccgctt gtcgtgatgt gtttttggtt
     7201 taatttttaa agaacaatgc ctttcggcga ggtttagaac ctttattcaa gccctccgtg
     7261 aagggctttg ataaaaattc ttagtgaatg taggcttgcc aaagttgttg agcttgctcg
     7321 gcgttcattt tgtcgctttg gttccagtcg attaacttgc catttctgaa cattgctctt
     7381 tcaatcacaa actcttgcgt ggcttcattt tcaaagacct caaacacatt gatgaaatca
     7441 ctggtgcgtt tttctttgcg tccgcataaa atgtagtctt tgtggttatt tagcgttgct
     7501 tgtgcgttca ttttggtttc ctctttgtct gtggcgttgt ttgttttgat gggtttatta
     7561 tcacaaattg aaatcattaa gtcaattcaa tttgtaatta ttttagccaa acaaatttca
     7621 attcgtgatt aaataattga ttttaaagag aaattatttt tagaaaggtt gtttgattgc
     7681 ttgtttttta aacacttaac ataagaagag aaagacaatt aggagaaaaa gcacttaaaa
     7741 aagattgtct tttttattgt gcgtgatata tttgtatcac attgtgtttg ctaggtgtta
     7801 ttatgattaa gagcttcaag cataaaggct taaaacaata ttttgaaaaa ggaataacaa
     7861 aaggtattca gcttaatcat caacgtaaaa tcgatggtat tttagatttg attgattcag
     7921 cagaaagtat tgatgaattt atgccttttt accaatgcca cgagttaaaa ggaaatcgaa
     7981 aaggcattta ttctatgacg gttaatggca actggcggat tacatttgaa tttgtaaatg
     8041 gcgatgctta tattttgaat tatgaagatt atcattaggg ggagttatgc gtaaaccagc
     8101 acatccgggg caaattttat tagatggatt tattgaacca aataacatca aaattaaaga
     8161 attagcagat catcttgggt tttctcgtga aactttatca agagtattac acggcaaaac
     8221 accaatgact gcaaatttag cgttaagttt agaagaggca ggaattagta cggctaagtt
     8281 atggctaaac ttacaaacta aatatgattt atgggagtta aagcagcagc ggttaaatcc
     8341 tgttatgcct tttcattttg gtggaaatta tggagaaact gctcacgctt aataatgccc
     8401 tcttcggagg attttattgt tcttaggaaa agaaaaccgc cacgagggcg gtttattcaa
     8461 ggaatatt
//
LOCUS       DANMBQ010000099         8408 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.099, whole genome shotgun sequence.
ACCESSION   DANMBQ010000099 DANMBQ010000000
VERSION     DANMBQ010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8408
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.099"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            71..3229
                     /locus_tag="PXE92_001944"
     CDS             71..3229
                     /locus_tag="PXE92_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HDL5761158.1"
                     /translation="MITINENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAE
                     VILKPLLAQAIAKFNPNLPACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKITYQ
                     LYGEQVSDVVQLIDFQRPENNDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKN
                     PLKENADIGKAFAQLQTYKDEISDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVV
                     DEKNQSKRIVFEDELTALLQGVMTPKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYG
                     VNEAVDCTLLAATGNRKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRN
                     DLDGQLYATFCGGEALLKQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELA
                     HPVLNERENIIVITDEAHRSQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTP
                     IELDDKDTQEVFGKYVSIYDFEDAVEDGATVPIIYEPRQISLGESGEFSKVMEEAQQL
                     IDDDENSYNFRLREKLHSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKL
                     YEKITALRPEWHSNDVLQGSIKIVMTSNASDPAEWQKHNQDKKTLEKRFKDPDDPLNI
                     VIVRDMWLTGFDAPCCNTMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGL
                     TDELEKAMKQYTNAGGKEKPVRDISAVLEKMVEHITVIHGQFATPIDGQAVDIAKMLQ
                     ISEPPKLLNAILTSANHILALDRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGAL
                     KAVEPYKQELAFYDAVRATIIKNSTAPRNSSSENDRLLQLTALMNRAVQSDGVVDLFD
                     LLKKDRPNINLLSDEFLETVKNSPTKDLWLSAMERYLASQLREQSGANLATKKAFEQK
                     LKEAMNQYHNHNLSVLEILEELIALAKEFEARQKRGEALGLSPAEMAFYDALARNESA
                     VREMGDEVLMKLAKDITDKLRKSVTVDWQYKDSVRAKMRTLIRIALRTYKYPPDLQAE
                     AIEFVLQQAEEIAGEFAITETA"
     gene            complement(3263..6154)
                     /gene="glnE"
                     /locus_tag="PXE92_001945"
     CDS             complement(3263..6154)
                     /gene="glnE"
                     /locus_tag="PXE92_001945"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HDL5761159.1"
                     /translation="MLTTLIPLSQLNLPPNLQNSEQIQPLVTAISLSNFVHQTLQKQP
                     DLLAEWLAKFPTPDDCCNYTERLAKILARVENEEMLGRVLRQFRHRELARLSFIQSNK
                     LATVELVFQHLSDLAESLILAARDWLFQRCCAEYGTPKNTLGETQELLILGMGKLGGR
                     ELNFSSDIDLIFTYPDIGETEGGRKSIENSKFFTRMGQRLIKVLDEITADGFVYRTDM
                     RLRPFGDSGALVLSFTAMEDYYQEQGRDWERYAMIKAKILGEDSQNLNHRYLKQMLRP
                     FVYRRYLDFSAIQSLREMKEKISREVVRRNLTDNIKFGAGGIREVEFIAQTFQMIRGG
                     RDKILQERSLLKVLPRLAELNLLTQTQVETLHNAYIFYRQIENVLQAIDDKQTQTLPT
                     DEASQARLVFACQSYYQQDLYSEKTHWVEHSFNDWQQFMAVLSQYQQAVRQIFNEIIG
                     EEETQANCNPVNEKLAEWKDILHYNIRLEDLSAVLKGYPKVAENDYTEIFRHFSTTFQ
                     DWVKRPIGVRGREVLRNLMPRIADSIFKGEDHLLLLPRVLNIVDKITTRTTYLELMLE
                     KEQILPQLLALCSKSVMIAEQIARYPMLLDELMSHRGLTDVQAFEKYQSALQDYLIRI
                     PEEDEEALIDGLRQFKQTQILRIAAADILGVLLVMKISDHLTYLAEAIINAVVNMAWK
                     QVSQRFGVPEHLEADEKGFAVIGYGKLGGIELGYNSDLDLVFLHNAPEDSQTVGGKKE
                     ISSHQFYLKLAQKINSIFNLNTSAGVLYEVDMRLRPSGEAGLLVSTFNAYEHYQKNEA
                     WTWESQALVRTRCVFGAENLKQAFEKIRQSTLAQPRASGQLRQEICEMRQKMYQHLSS
                     HSAEQFHIKQDQGGITDIEFIAQYLVLAHSHQHPKMAVWSDNVRIFDSAVECGILSSE
                     QSEQLQHCYTALRNKIHHLNLLRKDSVVDASEFTTERAFVREMWQRLLA"
     gene            complement(6326..6607)
                     /locus_tag="PXE92_001946"
     CDS             complement(6326..6607)
                     /locus_tag="PXE92_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HDL5761160.1"
                     /translation="MYYVIFAQDNPNMLEKRLEVRPAHLARLEKLQAEGRLLIAGPNP
                     TEDGSSVTGSTVIAEFNSLEEAQQWASQDPYVEAGVYSDVIIKPFKRVF"
     gene            complement(6609..7073)
                     /gene="yciA"
                     /locus_tag="PXE92_001947"
     CDS             complement(6609..7073)
                     /gene="yciA"
                     /locus_tag="PXE92_001947"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HDL5761161.1"
                     /translation="MKDKPYGKAPEGKLILRTLAMPSDTNANGDIFGGWIMSQMDLGG
                     AILAKELAKGRVVTVTVDKMIFHRPISVGDVVCCYGKLMHIGRSSMQVKVEVFIKQVY
                     EGNRERYLVTEALFTYVAIDKEGKPRAVPRENNPELDEALSLIDLTPEKQGE"
     gene            complement(7063..7620)
                     /locus_tag="PXE92_001948"
     CDS             complement(7063..7620)
                     /locus_tag="PXE92_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HDL5761162.1"
                     /translation="MKQLLEFIPLILFFVVYKMSGIQMASIALVIATIVQMIALKMLY
                     GKIEKQQIIMGGSVVFFGLLSAYFNEVKYLQWKVTIVYALFALVLLVSQFVFKTPLIK
                     KLLGKEIQLPEAVWNKINFGWAVFFLICMLLNIYISQYLSEEIWVDFKSFGIIGLTLV
                     ATVITGFVLYPYLKDAEKQEQKNER"
     gene            complement(7629..8378)
                     /locus_tag="PXE92_001949"
     CDS             complement(7629..8378)
                     /locus_tag="PXE92_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5761163.1"
                     /translation="MSIKFVDLLQQSWNFMRNQQAFSLFAIVTIVVVQLVFILVSPNS
                     PELMAESQPQQLQIDASKMVSILLPTILLGVVNLLINVLMIFNIQSINDGNYRQFFQN
                     AGNALKHFLPVLLLQFVMVLPLSLGASFAMASPETVIIALPVLVVGFYFFIKLSLVIY
                     AYLLEKPQKSLSESIKFTLQLSRGKMLPLILFCVISYLLPGMLSRLFTVFGNDFIGIF
                     ITIVLSAVINVFMAIFSFRFYQVYRQMPAVR"
BASE COUNT         2483 a         1827 c         1797 g         2301 t
ORIGIN      
        1 aaaataataa cttatctaaa attagagata agttattacc taaattatta agtggggaga
       61 tggagttgtg atgattacca tcaacgaaaa caccattgaa caatccgcca ttgcaacttt
      121 gcaaagcttg ggctgggact acacctacgg caaaaaaatt ttggcaggtt tagaacacga
      181 atggcgggag cgaaccgctg aggtgatttt aaagccgctt ttggcgcaag cgattgcaaa
      241 attcaacccg aatttgcccg cttgtgaggt ggaaaatgtg gtggcacagg tgtgccgtgc
      301 cgacagtggc gatttggcgg agcgtaatcg tcaggcttat gattggctaa gaaatggggt
      361 caaaatcact tatcagttgt acggtgagca ggtgtctgat gtggtgcagc tgattgattt
      421 tcagcgtcca gaaaataacg attttcgcat tgtcaatcag ctggatatta gcggcaaaaa
      481 aggcaaacgc attccggatt tgattggctt tgttaatggc ttgccgctgg tggtgtttga
      541 gctgaaaaat ccgctcaaag aaaatgccga cattggcaag gcgtttgccc aactgcaaac
      601 ctataaagat gaaatttctg atttgtttgt gtttaatcag gcactcgtga tttcagacgg
      661 cattgtcgcc cgcatcggtt cgctgaccgc tgatttcgac cgttttaccc cttggcgtgt
      721 ggttgatgaa aaaaatcaga gcaaacgcat tgtgtttgaa gatgaactca ccgccctgct
      781 gcaaggcgtg atgacaccca aaaatctctt ggattatgtg cagaattttg tggtgtttga
      841 acgggacggc aaaaaccgct taattaagaa aatcggagca tatcatcagt tttatggcgt
      901 gaatgaagcg gtggattgca ccttgcttgc cgccacaggc aaccgcaaaa tcggcgtgtt
      961 ttggcatacg caaggttcgg gcaaatcgct ttcgatgctg ttttatgcag gtaaagtatt
     1021 aagccaaagc agcctgaaaa atccaacttt ggtgttggta accgaccgca acgatttgga
     1081 cggtcagctt tacgccactt tttgcggtgg cgaggcactg ctcaaacaaa cgccaatcca
     1141 agccgatggg cgagacgaac tccgctctgc ccttgccagt cgttcggcag gcggtgtgat
     1201 ttttaccacc attcaaaaat tcggcttaat ggagggtgag cttgcccacc ctgtattaaa
     1261 cgagcgggaa aacatcattg tgattaccga tgaagcacac cgctcacaat atggttttag
     1321 ccaaaaaatc aaccacaaag gcgagtatcg tgagggttat gccaagcatt tacgcagtgc
     1381 attgccgaat gcctctttta ttggctttac tggcacaccg attgaacttg atgacaaaga
     1441 cacccaagaa gtcttcggta aatatgtctc gatttatgat tttgaagatg cggtggaaga
     1501 tggggcaacc gtgccgatta tttatgagcc acgccaaatc agcttaggcg aaagtggcga
     1561 gttttccaaa gtgatggaag aggcacaaca actgattgat gacgatgaaa acagctataa
     1621 cttccgcctg cgtgaaaaac tgcacagcgt ggatagccgt ttgcaaaaaa tggcggaaga
     1681 tattattgcc cattacgatg agcgtaccaa acagcaagac ggcaaggcga tggttgtggt
     1741 gatgagccgt gccatttgcg tgaaattgta cgaaaaaatc accgcacttc gtccagaatg
     1801 gcactcaaac gatgtgcttc aaggcagcat taaaattgtg atgacaagta atgccagcga
     1861 ccctgccgag tggcaaaaac acaatcagga taagaaaacc ttagaaaaac gctttaaaga
     1921 cccagacgat ccgctcaaca tcgtgattgt gcgggatatg tggctgacag gctttgatgc
     1981 gccctgctgt aacacaatgt acattgataa accaatgagc ggacacaacc tgatgcaggc
     2041 aatcgctcgg gtaaatcggg tatttcgcaa caaaagccgt gaaaatggcg gcttgattgt
     2101 ggattatgtg ggcttgaccg atgagctgga aaaagcgatg aagcagtaca ccaacgcagg
     2161 cggtaaagaa aagccggtgc gggacatttc agcggtgctg gaaaaaatgg tggaacatat
     2221 cacggtcatt catgggcaat ttgccacacc gattgacgga caagcggttg atattgccaa
     2281 aatgttgcaa atcagcgaac cgcctaaact gctcaatgcg attttgacat cagccaacca
     2341 tattcttgcc ctagaccgca ttcagccacc tgataacact gccaaagaca aaaccccacg
     2401 caaaaacgcc tttttgcaat cggtacgctt ggcgaaaaaa ggttatgctt tgtgtggggc
     2461 attaaaagca gttgaaccct ataaacagga actggcgttt tatgatgcag tgcgtgccac
     2521 cattatcaaa aacagcaccg ctcctcgcaa ttcttcgagc gaaaatgacc gcttgttgca
     2581 gcttaccgcc ttgatgaatc gtgcggtaca gtcggatggt gtggtggatt tatttgattt
     2641 gctgaaaaaa gaccgcccaa acatcaacct gctttctgat gagtttttgg aaacagtaaa
     2701 aaacagccca accaaagatt tgtggctatc agcaatggag cgttatcttg cctcacaact
     2761 gcgagagcaa agcggtgcca atcttgccac aaaaaaagca tttgaacaga aactcaaaga
     2821 ggcgatgaac caataccaca accacaattt aagcgtattg gaaattttag aagagctgat
     2881 cgccctcgcc aaagagtttg aagcccgcca aaaacgaggg gaagcgttgg gactaagccc
     2941 tgcggaaatg gcgttttatg atgctttggc acgtaatgaa agtgcggtgc gggaaatggg
     3001 cgatgaggta ttgatgaaac ttgccaaaga cattaccgat aaattacgca aatcggtcac
     3061 cgtagattgg caatataaag actcggttcg tgccaaaatg cgaaccttaa tccgcattgc
     3121 tctgcgtacc tataaatacc cgcccgattt acaggcggaa gcgattgagt ttgtgttgca
     3181 acaagcggaa gagatcgccg gagagttcgc tatcaccgaa acggcgtaat ctatattagg
     3241 gcgtgcaatg tacgccctaa atttatgcta ataacctctg ccacatttcc cgcacaaatg
     3301 ctcgctcggt ggtaaattca cttgcgtcca ccacgctgtc tttgcgtaat aagtttaggt
     3361 ggtggatttt gttacgcagt gcggtgtagc aatgttgtag ctgttcgctt tgttcggaac
     3421 ttaaaatacc gcattctact gcgctgtcga aaattcggac attatccgac catactgcca
     3481 ttttcgggtg ttggtggctg tgggctaata ccaaatattg ggcgataaat tcaatatcgg
     3541 taatacctcc ttgatcttgt ttaatatgaa attgctcggc tgaatgcgag cttaaatgtt
     3601 ggtacatttt ctgtcgcatt tcgcaaattt cttggcgtaa ttgaccgctt gcacgaggct
     3661 gagcaagcgt gctttggcgg attttttcaa aggcttgttt gaggttttcc gccccaaata
     3721 cacatcttgt ccgcacgagg gcttggcttt cccacgtcca cgcttcattt ttttgataat
     3781 gctcgtaggc attgaaagtg ctgactaaaa gcccagcctc gcctgatggg cgaagtcgca
     3841 tatccacttc atatagtacg ccggcactgg tattaaggtt aaaaatcgag ttaatttttt
     3901 gagccaattt taagtaaaat tgatggcttg aaatctcttt tttaccgcca acagtttggc
     3961 tatcctctgg ggcattatgc aagaaaacca agtcgagatc tgaattatag cccagttcaa
     4021 tcccgcctag cttgccgtag ccaataactg caaacccttt ttcatcagcc tctaaatgtt
     4081 ccggcacacc aaagcgttgg ctgacttgct tccacgccat atttaccacc gcattaataa
     4141 tcgcttctgc taagtaagta agatgatcgc tgatcttcat taccagcagc acgcctaaaa
     4201 tatcagcagc ggcgatgcgt aaaatttggg tttgtttgaa ctgacgtaag ccatcaatca
     4261 gtgcttcttc atcttcttca ggaatgcgga ttaaataatc ctgcaaggca gattgatatt
     4321 tttcaaaagc ctgcacgtcg gttaagcctc tatggctcat cagctcatca agtagcattg
     4381 gatatcgagc tatctgttcc gcaatcataa ccgacttact acacaatgct aaaagttgag
     4441 gcagaatctg ctctttttcg agcattaatt ccaaataggt agttcgggtg gtgattttat
     4501 cgacaatatt caacacgcga ggcaataaca ataaatgatc ttcaccttta aaaatgctgt
     4561 cggcaattct aggcattaaa ttgcgtagca cctctcgccc tcttacccca atcgggcgtt
     4621 ttacccaatc ttgaaaggta gtagaaaagt gacggaaaat ctccgtataa tcattttctg
     4681 caacctttgg ataacctttt agcactgcgg ataaatcttc aaggcgaatg ttatagtgca
     4741 aaatgtcttt ccattcggct aatttttcat taaccggatt gcagttggct tgtgtttcct
     4801 cttcaccgat aatttcatta aaaatctggc gtactgcttg ttgatattgg ctcaatactg
     4861 ccataaattg ttgccaatcg ttaaaggaat gctccaccca atgcgttttt tcgctatata
     4921 gatcttgctg ataatagctt tggcaagcaa atacaaggcg ggcttgcgag gcttcatcag
     4981 tgggtagggt ttgagtttgt ttatcgtcaa tcgcttgtaa tacattttca atttgacggt
     5041 aaaaaatata ggcattgtgg agcgtttcca cctgcgtttg ggttaataaa tttaattctg
     5101 ccaagcgtgg tagcactttt aacaggctac gttcttgtaa aattttatct cgcccgccac
     5161 ggatcatttg gaaagtttgg gcgataaact ccacttcccg aatcccaccg gcaccaaatt
     5221 taatattatc ggttaaatta cggcgaacca cttcacggct gattttttct ttcatttcac
     5281 gcaacgattg gattgcactg aaatccagat aacggcggta aacaaaaggg cggagcattt
     5341 gctttaaata gcgatgattt aaattttggc tatcctcgcc taaaattttt gctttaatca
     5401 tcgcataacg ttcccaatca cgcccttgct cttggtaata atcttccatt gcagtaaaac
     5461 tcagcaccaa ggctccgcta tcaccaaagg ggcgaagtcg catatcggta cgatacacga
     5521 aaccatcagc ggtgatctca tctaatactt taattaaccg ctgccccatt cgggtaaaaa
     5581 atttgctgtt ttcaatcgat ttgcgtccac cttcggtttc accaatatcg gggtaggtaa
     5641 aaatcaggtc aatatcggaa gaaaaattaa gctctcgtcc gcccaatttg cccataccta
     5701 aaatcagcag ttcttgtgtt tcgccaagag tgttctttgg cgtgccatat tcggcacagc
     5761 aacgctgaaa caaccaatct cgagcggcta gaatcaggct ctcggctaaa tccgacaaat
     5821 gctgaaatac caattctacc gtcgctaatt tatttgactg aataaagctc agacgagcca
     5881 attcacggtg gcgaaattgc cgcaaaaccc tccccaacat ttcttcattt tccactcttg
     5941 ctaatatttt tgctaaacgc tcagtataat tgcagcaatc atcaggcgta ggaaacttgg
     6001 caagccattc tgccagtaaa tccggctgtt tttgcaaggt ttgatgcacg aaattggaaa
     6061 gcgaaatcgc cgtcacaagc ggttgaattt gctcagaatt ttgcaaattg ggcggtaaat
     6121 tgagttggga taagggaatt agggtggtaa gcataaattt aggctcaaaa ttgaaaatag
     6181 atagaatttt acgctcgatc aattcccctc tttagcaaag agggcttagg ggagatttgg
     6241 cagaggtaat tttactctca tacgaaacat taatatcgta atcaaatctc ccccagcccc
     6301 tcttttctaa agaggggaga aaaaattaaa acactctttt aaacggttta ataatcacat
     6361 cgctatacac accggcttcc acataaggat cttggcttgc ccattgttga gcttcttcaa
     6421 gtgagttgaa ctctgcaatt acagttgaac cggttacgct tgagccgtct tcagtcgggt
     6481 taggccctgc gattaataat cgaccttctg cctgtaattt ttccaaacga gccaaatgag
     6541 ccgggcgaac ttctaaacgt ttttccaaca tattgggatt atcttgggca aagataacat
     6601 aatacatact attctccttg tttttcaggg gttaaatcaa ttagcgataa tgcttcgtct
     6661 aattcggggt tattttctct cggcacagca cgcggtttgc cttctttatc aatcgctaca
     6721 taggtaaata aggcttcggt tacgagataa cgttcgcgat tgccctcata aacttgtttg
     6781 ataaagacct cgactttcac ttgcatcgaa gaacgcccta tgtgcattaa cttgccgtag
     6841 cagcagacca catcaccgac tgaaatcggg cggtggaaaa tcattttatc taccgttacc
     6901 gtaacgactc taccttttgc caactctttg gctaaaattg caccgcctaa atccatctgc
     6961 gacataatcc aaccgccgaa aatatcgcca ttggcgttag tatctgacgg cattgccaaa
     7021 gttcttaaaa tcagtttccc ttccggggct tttccatagg gtttatcttt catttttttg
     7081 ttcctgcttt tcagcatctt ttaagtaagg gtaaaggacg aaaccggtaa taaccgttgc
     7141 gactaaggtt aagccaataa tgccaaagga tttgaaatca acccaaatct cttccgataa
     7201 atattgactg atataaatat tcagcagcat acaaatcaga aagaatactg cccaaccgaa
     7261 gtttatttta ttccacactg cttcaggcaa ctgaatttct ttgcctaata attttttgat
     7321 taatggtgtt ttgaacacaa attggctcac taatagcacc aatgcaaaca gagcgtaaac
     7381 aatggttact ttccattgta aatatttaac ttcattaaaa taggcactca gtaagccgaa
     7441 aaagaccacc gagccaccca taataatttg ctgtttttca attttgccgt agagcatttt
     7501 taaggcgatc atttgcacga ttgtagcgat aaccaatgcg atagacgcca tctgaatacc
     7561 gctcatttta tacacgacaa aaaacagaat cagcggaata aattcaagta actgtttcat
     7621 tgatactcct aacgcactgc cggcatttgg cggtaaactt ggtaaaagcg gaagctgaaa
     7681 atcgccataa agacgttaat taccgcactt aaaacaatgg taatgaatat gccaataaag
     7741 tcattaccaa acactgtgaa caaacgagat aacatccccg gtaataaata agaaatcaca
     7801 caaaataaaa tcagcggtag catttttcca cgtgataatt gaagcgtaaa tttaatactt
     7861 tccgatagac ttttctgcgg tttctccaat aaataagcat aaatcactaa cgataatttg
     7921 ataaaaaaat aaaaaccgac taccaacacc ggcaatgcaa taatcactgt ttcaggcgat
     7981 gccattgcaa aagatgcacc gagagaaagc ggtaacacca tcacaaattg taacaacagc
     8041 acaggtagga agtgctttaa tgcgtttcct gcattttgga aaaattgacg ataattgcca
     8101 tcgttaatcg attggatatt gaaaatcatt aagacattga tcaaaagatt gacaacacct
     8161 aataaaatag ttggcaatag tatagacacc attttagagg catcaatttg aagttgttgc
     8221 ggttgcgact ccgccattag ctcaggcgaa tttggcgaca ctaaaataaa aaccaactgc
     8281 acaaccacaa tggtgacaat ggcaaacagt gaaaatgctt gttgattacg cataaagttc
     8341 caactttgct gcaataaatc gacaaattta attgacataa aatacccttc aatagattgt
     8401 aaatattt
//
LOCUS       DANMBQ010000100         8399 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.100, whole genome shotgun sequence.
ACCESSION   DANMBQ010000100 DANMBQ010000000
VERSION     DANMBQ010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8399
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.100"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            91..1467
                     /locus_tag="PXE92_001950"
     CDS             91..1467
                     /locus_tag="PXE92_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDL5761164.1"
                     /translation="MLSNEVFISIIVLLILSLLRINVVIALIISALTCGLIGNLGVEG
                     AGFTEALEKTIKSFTGGLGGGAETAMNYAVLGAFAVALSKSGVTDLLAYKVIKSFGHS
                     PSGRSVTWFKYIVLFVLVAFAMSSQNLIPIHIAFIPILIPPLLSVMNKLQIDRRAVAC
                     ALTFGLTATYMLIPAGFGQIFIESILVKNINQAGEPFQLVTTTAEMTKAMLIPVSGMI
                     LGLLFAFFVSYRKPRVYIENMPEPTADDIEARVANVKPFHIGISIVAIIATCSVQLAT
                     NSTIIGGLVGLVIFALGGVFRLKESNDVFQAGLRLMAMIGFVMIAASGFAGVVNSTGG
                     VPALVESLRDVISSKEMAALLMLVVGLFITMGIGSSFSTVPIITSIYVPLCISFGFSP
                     LATMAIVGVAAALGDAGSPASDSTLGPTSGLNADGKHDHIWDSVVPTFIHFNIPLLVF
                     GWIAAMTL"
     gene            1565..2368
                     /gene="xthA"
                     /locus_tag="PXE92_001951"
     CDS             1565..2368
                     /gene="xthA"
                     /locus_tag="PXE92_001951"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HDL5761165.1"
                     /translation="MKFISFNINGLRARPHQLEAIIEKHQPDVLGLQEIKVADEDFPY
                     DLVNHLGYHVFHHGQKGHYGVALLTKKEPIAVRKGFPTDVLDAQKRMIMADIETDFGV
                     LTVLNGYFPQGENRSHETKFPAKQKFYADLQNYLESELKPENPIIIMGDMNISPTDLD
                     IGIGEPNRKRWLRDGKCSFLPEEREWLDRLYSYGLVDTFRAGNPDVNDKFSWFDYRSK
                     GFDDNRGLRIDLILASKSLAERCVETGIDLDIRAMEKPSDHSPVWATFK"
     gene            2522..3106
                     /gene="lptC"
                     /locus_tag="PXE92_001952"
     CDS             2522..3106
                     /gene="lptC"
                     /locus_tag="PXE92_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HDL5761166.1"
                     /translation="MNKRLTVILLIIVAVLGGWYYSLQEKENTGLDQLIKKEGQPEYV
                     GNKMSTTVYDLKGNPQYFAQATEIKRYESTERTEFFKPFIELFAKESTQKQWKVSADY
                     AEITKEKMLNLKGNIKLVALDPASRLQQITTDTLTVDLNTQDIFTESTVKSIGSGFTT
                     TGVGLKGNLKQQVATLQKDVKSYIEPTIIQETKE"
     gene            3130..3636
                     /gene="lptA"
                     /locus_tag="PXE92_001953"
     CDS             3130..3636
                     /gene="lptA"
                     /locus_tag="PXE92_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HDL5761167.1"
                     /translation="MKLMFKSILVSVLLGSSFSAYALKGDTDQPINIDSGSQSLDMTN
                     NIVTFSDNVVITQGSIKVTAANVKITRQEGKKETIDATGSPVTFQQTLDNGKPVNGKG
                     NSVHYDLNSEFLTLIGNAELKQQGSFIKANKITYDVKKQQLKATSGGKTRVKTVLIPN
                     ELQDNKKK"
     gene            3648..4373
                     /gene="lptB"
                     /locus_tag="PXE92_001954"
     CDS             3648..4373
                     /gene="lptB"
                     /locus_tag="PXE92_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005727816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HDL5761168.1"
                     /translation="MSVLYAEHLAKSYKQRQVVKDVSLNVKSGEIVGLLGPNGAGKTT
                     TFYMVVGLVRHDHGTIRIDDQDISTLPMHDRAKQGIGYLPQEASIFRRLSVYDNLMSV
                     LQVRKNINDKQRKERAEELITEFHIEHIRNSLGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKKIIVNLKERGLGVLITDHNVRETLDVCERAYIVGSGEMIAS
                     GTPQQVLENPDVKRVYLGDQFKL"
     gene            4415..4927
                     /locus_tag="PXE92_001955"
     CDS             4415..4927
                     /locus_tag="PXE92_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5761169.1"
                     /translation="MTKLTEFLSPENVRQGVLISSKKRALELVGKIVAESINQTEQQS
                     EALCPIECFGNLFKREKLGTTGLNQGIALPHAKLPACGDIELTKPIAVFLQLEEAIDY
                     EAQDNKEVDLIYAMMFPENSCEQYKSCLPAIAQKLTDKSLLKQLRAAESAEDIWQILV
                     YADNHLKDEE"
     gene            4940..5803
                     /gene="rapZ"
                     /locus_tag="PXE92_001956"
     CDS             4940..5803
                     /gene="rapZ"
                     /locus_tag="PXE92_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HDL5761170.1"
                     /translation="MELIIISGRSGSGKSVALRALEDAGYYCVDNIPLPLIPTLTYYL
                     TQENRSAVISLDIRNLPNTPNAIEELLTQLEPLNAKLIFLDCERNTLIRRYSDSRRIH
                     PLSTQDDLSLEGALDLEQKLLEPLVQNANYIIDTSHLSSHELAENLRQILQGSTEKEL
                     KIIFQSFGFKYGLPADSDYVFDVRFLPNPHWNPELRPMTGLEQPVIDFLERQTEVHNF
                     IYQTRNYLEMWLPMLEQNNRSYLTIAIGCTGGKHRSIFIAEQLAKYFQAKGKNVQVRH
                     KSLEKHHKKTS"
     gene            5886..7070
                     /locus_tag="PXE92_001957"
     CDS             5886..7070
                     /locus_tag="PXE92_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL5761171.1"
                     /translation="MKSADIVIVGGGMVGLALAGLLKDVDCQIKIIEKNTPKFDADTI
                     YHRVSAINASSQKILEQIGAFQHIPAQRLSPYTEMKVWEKDSFANIHFDNNDNEIKQL
                     GLSQLGFILENAVIQHALWQQVSQQANVEYIIAAPQTLGVSENGAFLTLDNGEMLSAK
                     LVVGADGANSWVRNQMKMPLTSKDYQHTALVCNVKTTEKHGKTARQIFAEDSIFAFLP
                     MADEHLCSIVWSLPPNKANELKNASEAEFNKALTIAFDNQLGLCEVQSLREIYPLAAR
                     FCRDFAQPRIALIGDAAHTIHPLAGLGVNLGFADARTLANEIQKQLVNNQDIGEYRHL
                     RQFERERKAQAMKLLATMEGLKQLFDGNHPLKKLFRGIGLSLTNQLPFVKKQLIQQAI
                     YL"
     gene            7202..7786
                     /locus_tag="PXE92_001958"
     CDS             7202..7786
                     /locus_tag="PXE92_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein HlpB"
                     /protein_id="HDL5761172.1"
                     /translation="MNKLTKISATALVALFLAACDKPAEKAPATEPTKTTEAAPTTTA
                     PAAEAAKPAETAVAAPSEAAKADYQKLVDWNTAQESTMATAQAELQKKLATQDPKQIQ
                     EGLSAFNKKVEETVKSLDAIEVSDAQIKTFKEKTKSVLTLSSEVISEQVKTISTPNDQ
                     AALQAVQQKAQSLIEAGNELQKLNVELQQRFSAK"
     gene            7853..>8399
                     /locus_tag="PXE92_001959"
     CDS             7853..>8399
                     /locus_tag="PXE92_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein Hlp"
                     /protein_id="HDL5761173.1"
                     /translation="MNTLAKISLSVLFTLFLTACEQPNSTKTQSSAESPVQVKEESKE
                     EVKPADTGAQDYKMLREWQDTQEKALNDAIKAATETLTDKQKADSTLMQETVNNALLA
                     QIDHIKISAETLNIQNNEVKALKDKTLEVLTLGAQMIVEGAKMEKNPTPEAHKAFGEL
                     QTKLNQLAEEGQQLENILRAKY"
BASE COUNT         2704 a         1688 c         1668 g         2339 t
ORIGIN      
        1 aaaagttcct gaatttaaaa aaaattctcg acaatacttt tttttacagt aaattaaaca
       61 attatttaaa taacctaagg atcaaacaca atgttatcaa acgaagtctt tatttcgatt
      121 atcgtgctgt taatcctaag cttgcttaga attaatgtag taatcgcact tattatttct
      181 gcccttactt gcggtctaat cggtaatctt ggtgtagaag gggctggatt taccgaagca
      241 ttggaaaaaa caataaaaag ttttactggt ggtttaggtg ggggtgcgga aactgctatg
      301 aactatgccg ttcttggtgc gtttgccgta gctctatcaa aatcaggcgt gaccgattta
      361 ttagcctata aagtgatcaa atcctttggt cacagcccgt caggtcgctc cgttacttgg
      421 tttaaataca ttgtattatt tgtgttagtg gcatttgcaa tgtcatctca aaacctaatt
      481 ccaattcata ttgcctttat tccgatttta attccaccgc tattaagcgt aatgaataaa
      541 ttgcaaattg accgccgtgc ggtagcttgt gctttaacct ttggtttaac cgccacttat
      601 atgttaattc cggcaggttt cggtcagatc tttattgaaa gcatcttagt taaaaatatc
      661 aaccaagcag gtgaaccgtt ccaattagtg actaccacag cggaaatgac caaagcgatg
      721 ttaattcctg tttccggtat gattttaggc ttactgtttg cattctttgt gtcataccgt
      781 aaaccgcgtg tgtatattga aaatatgcct gaaccaaccg cagatgatat tgaagcccgt
      841 gttgcaaacg ttaagccctt ccatatcggc attagtattg tggcgattat cgcgacctgt
      901 tcggtgcaat tagcaacaaa ttcgactatt atcggcggct tagtcggtct ggttattttc
      961 gccttaggcg gtgtatttag actgaaagag agtaacgatg tcttccaagc tggcttacgt
     1021 ttaatggcga tgattggctt tgtgatgatt gccgcctccg gttttgccgg cgtggtcaat
     1081 tcaacaggcg gtgtgccggc attggtagaa agcctgcgtg atgtgatttc atcaaaagaa
     1141 atggcagcat tgctaatgtt agtcgttggc ttatttatta cgatgggtat cggctcttca
     1201 ttctcgactg tgccgatcat tacctcaatt tatgtgccgc tttgtatctc atttggcttc
     1261 tcgccactgg cgacaatggc gattgtcggt gttgctgctg cactcggtga tgcaggttct
     1321 ccggcatcag attccacact tggtccaacc tccggcttga atgctgacgg taaacacgac
     1381 cacatttggg attctgttgt accaactttt atccacttta acattccatt attagtgttc
     1441 ggctggattg cagcaatgac actttaagct ataatatgca aaatttttgc taaaaatgac
     1501 cgcttgtagc cattacaagc ggtctatttt cttctttatt ttgcaaacca cattaggatc
     1561 accaatgaaa tttatctctt ttaatatcaa cggattacga gccagaccac atcagctcga
     1621 agcgattatc gaaaaacacc agcccgatgt actcggctta caagaaatca aagttgccga
     1681 tgaagatttt ccttacgatt tagtcaatca cttaggctac cacgttttcc accacgggca
     1741 gaaaggtcat tacggcgtgg cattactgac taaaaaagag cctatagcgg tgcgtaaagg
     1801 cttcccgaca gatgtacttg atgctcaaaa acgaatgatt atggcggata tcgagaccga
     1861 tttcggcgtg ctaaccgtat taaacggcta tttcccacag ggggaaaatc gcagccacga
     1921 aaccaaattc ccggcaaaac aaaaattcta tgctgatttg cagaactact tggaaagcga
     1981 attaaagccg gaaaatccga ttattattat gggcgatatg aacatcagcc cgactgattt
     2041 ggatatcggc atcggcgagc caaaccgcaa acgctggctg cgtgacggta aatgttcatt
     2101 cttacccgaa gagcgtgaat ggctagatcg cttatacagc tacggcttgg ttgatacttt
     2161 ccgtgcaggc aacccagacg tgaacgataa gttctcttgg tttgactacc gttcaaaagg
     2221 ttttgatgat aatcgtggct tgcgtattga tttaattctt gcttcaaaat cacttgctga
     2281 gcgttgcgtg gaaacaggca ttgatttaga cattcgagca atggaaaaac cgtctgacca
     2341 ctcccctgtt tgggcaacct ttaaataaag ttgcaaaaaa atctgagttt tcaaccgctt
     2401 gtcagttttt agccctacaa gcggttattt tttctcactt ttttgcactt tttacgctgt
     2461 actatatccc tattcaaatc tgtgctacaa tcaaacacta tttttagatt atttttggat
     2521 tatgaacaaa cgtttaaccg ttattttact gattattgtt gccgtacttg gtggctggta
     2581 ttacagctta caagagaaag agaatacggg gcttgatcag cttattaaaa aggaaggaca
     2641 gcctgaatat gtggggaata aaatgtccac cacggtctat gatctaaaag gaaacccaca
     2701 atatttcgct caagctactg aaattaaacg ctatgagtct actgagcgta ctgagttttt
     2761 taaacctttt attgagcttt ttgccaaaga gtcgacgcaa aaacagtgga aagtcagtgc
     2821 cgattatgca gaaattacca aagaaaaaat gttaaattta aaaggtaata tcaaacttgt
     2881 tgcattagat cctgcatcac gtttgcaaca aatcactacc gatacgttaa ctgttgattt
     2941 aaatacacag gatattttta ccgaaagtac ggtcaaatcg ataggttccg gttttactac
     3001 aacgggggtt ggattaaaag gtaacttaaa acaacaagtt gcgactttgc aaaaagatgt
     3061 aaaatcttac attgaaccga ccattattca agaaactaaa gaataatttg cttggaacaa
     3121 ggaataacaa tgaaattaat gtttaaatct attttagtga gcgtgttact gggtagcagc
     3181 ttttccgctt atgctctaaa aggcgatacc gatcagccga ttaatattga ttcaggtagc
     3241 caatcgttag atatgactaa caatatcgtg acctttagcg ataatgtcgt tatcactcaa
     3301 gggtcgatta aagtgaccgc agcaaacgtc aaaattaccc gtcaagaagg taaaaaagaa
     3361 actattgacg ctacaggctc acctgtaaca ttccaacaaa ccttagataa cggtaaaccg
     3421 gtaaacggta aaggcaacag cgttcattat gatttaaact ctgaattttt aacgctgatt
     3481 ggcaatgcgg aactcaaaca acaaggtagc tttattaaag ccaataaaat tacctatgat
     3541 gtgaaaaaac aacaacttaa agctaccagt ggcggtaaaa cccgagtgaa aaccgtgcta
     3601 attccaaatg aacttcaaga taacaagaaa aaataaggtt aaatgatatg tctgtgcttt
     3661 atgccgaaca tttagcaaaa agctataaac aacgccaagt ggtaaaagac gtcagcctga
     3721 atgtcaaatc aggtgaaatc gtgggcttgc tcggtccgaa cggcgcaggt aaaaccacca
     3781 ctttctatat ggttgtgggt ttggttcgcc acgaccacgg cacaattcgt attgacgacc
     3841 aagatatcag cacactacca atgcacgaca gagcaaaaca agggattggc tatctaccgc
     3901 aagaagcatc tattttccgc cgtttaagtg tgtacgataa cttaatgtcg gtattacaag
     3961 tgcgtaaaaa tatcaatgat aaacagcgta aagagcgtgc cgaagagctg attacagaat
     4021 tccatattga gcatattcgc aatagtttag gtcaatcact ttcaggtggt gaacgccgcc
     4081 gtgtggaaat tgcccgagca ttagcagcga acccgaaatt tattctgtta gatgaacctt
     4141 ttgctggggt tgacccaatc tcggtaattg atattaaaaa aattatcgtc aatttaaaag
     4201 agcgtggttt aggggtattg attaccgacc ataacgtacg tgaaactcta gatgtatgtg
     4261 aaagagccta cattgtcggt agcggcgaaa tgattgccag cggcacacca cagcaagtgc
     4321 ttgaaaaccc tgatgtaaaa cgtgtttatt taggcgatca attcaaactc taaaaaatcc
     4381 cctctttggg gatttcatct ttagatgaaa aattatgaca aaactaaccg aatttctaag
     4441 ccctgaaaat gttcgccaag gtgtactgat ttcaagtaaa aaacgagcgt tagaactcgt
     4501 gggtaaaatc gtggctgaat caatcaacca aaccgaacag caatctgaag cactctgccc
     4561 tattgaatgc tttggcaatt tatttaaacg tgaaaagtta ggcacaaccg gcttaaatca
     4621 aggcattgca cttcctcatg caaaattgcc cgcttgcggt gatattgagc tgactaaacc
     4681 gattgcggtc tttttacaac tggaagaagc gattgactac gaagcccaag acaacaaaga
     4741 agtggattta atttatgcaa tgatgtttcc ggaaaatagc tgcgaacagt ataaaagttg
     4801 cctacctgca attgcacaga aacttaccga taaatcgtta ttaaaacagc tccgagcagc
     4861 tgaatccgca gaagatattt ggcaaatttt ggtgtatgct gataatcacc taaaagatga
     4921 agaataatac tgaggaaata tggaattaat cattataagc ggacgctcag gctctggtaa
     4981 atcggtagca ttaagagcat tagaagatgc aggttattac tgcgtggata atatcccttt
     5041 acctttaatt ccaaccttaa cctactacct tactcaagaa aatcgttcgg cagtcatcag
     5101 cttagatatt cgtaatttac cgaatacgcc taatgcgatt gaagaattgc ttacccagct
     5161 tgagccttta aatgctaagc tgattttttt agattgcgaa cgcaatacct taatccgccg
     5221 ttatagcgat tcccgccgaa tccacccgct ttccacccaa gacgatctct cgttagaagg
     5281 tgcattggat ttggaacaaa aattgcttga gcctttggtg caaaatgcaa attatattat
     5341 tgacaccagt catctttctt cgcacgaatt agcggaaaat cttcgccaaa tactgcaagg
     5401 ctcaaccgaa aaagagctta aaattatttt ccaatcattc ggttttaaat acggcttacc
     5461 tgccgattcc gattacgttt ttgatgttcg ctttttaccg aacccacatt ggaatccgga
     5521 gcttcgccca atgacaggct tagagcaacc ggtgattgat ttcttagaac gccaaaccga
     5581 agtgcataat tttatttacc aaacccgcaa ttatttagaa atgtggctgc cgatgttgga
     5641 acaaaataac cgtagctacc taactattgc gattggttgc actggtggaa aacatcgttc
     5701 catatttatt gccgagcaac tggcaaaata tttccaagca aaaggcaaaa atgtgcaagt
     5761 tcggcataaa agtttggaaa aacaccataa aaaaacatct taaataagta ggggctggtc
     5821 ctgtgccagc cctcatttca actattttag ggcgggcaca gggcaccgcc cctacatttg
     5881 attttatgaa atccgcagat attgttattg ttggcggcgg tatggttggg ctggctcttg
     5941 ccggactgct caaagatgtc gattgccaaa ttaaaattat tgagaaaaac acgcccaaat
     6001 ttgatgccga tacgatttac caccgtgtaa gtgcgattaa tgcttcaagc caaaaaatac
     6061 tggaacagat tggtgctttt caacacattc cggctcaacg cctttctcct tacaccgaaa
     6121 tgaaagtgtg ggaaaaagac agctttgcta atatccattt tgataataat gataatgaaa
     6181 tcaagcaatt aggactttca caacttggct ttattttgga aaatgcggtg attcaacacg
     6241 cattgtggca acaggtttct caacaagcta atgtagaata tattatcgcc gccccccaaa
     6301 ctctgggcgt gagcgaaaac ggggcatttt taaccttaga taacggcgaa atgctgtctg
     6361 ctaaattggt tgtcggggca gacggtgcaa attcgtgggt gcgtaaccag atgaaaatgc
     6421 cgcttaccag taaagattat caacataccg ccttagtctg taatgtcaaa acaaccgaaa
     6481 agcacggcaa aaccgctcgt caaatctttg ctgaagatag catttttgct tttctgccaa
     6541 tggcagatga gcatctctgc tcgattgttt ggtcgctgcc accaaacaaa gccaatgaat
     6601 taaaaaatgc aagcgaagcc gaatttaata aagccttaac gattgccttc gataatcagc
     6661 ttggcttatg tgaagtgcaa agtttgcgtg aaatttaccc gcttgcagca cgcttctgcc
     6721 gtgactttgc ccaacctcgt attgcgttga ttggtgatgc cgctcatacc attcacccat
     6781 tggcgggact tggtgtcaat ttaggctttg ccgatgccag aacgctggca aacgaaatcc
     6841 aaaaacagtt ggtaaacaac caagatattg gtgaataccg ccatttacgc caatttgaac
     6901 gtgagcgtaa agcccaagcg atgaaattat tagccacaat ggaaggatta aaacagctat
     6961 ttgacggcaa tcacccgctt aaaaaattat tcagaggaat tggtttaagc ctaaccaacc
     7021 agctgccttt tgtgaaaaag cagcttattc agcaagctat ttacttataa aatgtaaatt
     7081 ttttcgaaat aacgtaaaga tgaacgattt tatgaactaa tacggagatt acttgtctat
     7141 ttattggtac aataaccagc ctttattggc ttttattttt atattcttga ggaatttttt
     7201 aatgaacaaa ttaacaaaaa tcagtgcaac cgctttagtc gcattattct tagcagcttg
     7261 tgataaacca gcagaaaaag caccggcaac agaacctaca aaaacaactg aagctgcacc
     7321 aactacaaca gctcctgctg cagaagcagc caaacctgct gaaacagctg tagccgctcc
     7381 aagcgaagct gcaaaagcag attaccaaaa attagttgat tggaatacgg cacaagaaag
     7441 cacaatggca acagcacaag cagaactaca aaagaaatta gctacacaag atcctaaaca
     7501 aattcaagaa ggattaagtg catttaataa aaaagtagaa gaaactgtaa aaagcttaga
     7561 tgcgattgaa gtatctgatg cacaaatcaa aacatttaaa gaaaaaacaa aatcagtttt
     7621 aacactttca agtgaagtga tttctgaaca agtaaaaacg atctctacac caaatgacca
     7681 agcagcatta caagccgtac aacaaaaagc tcagtcttta attgaagctg gtaatgagtt
     7741 acaaaaatta aacgtagaat tacagcaaag attctcagct aaataattta ccattcaatg
     7801 aaaagctaga gtattttgct ctagcttttt tttgcaatta ctaaggatta ctatgaacac
     7861 gctcgctaaa attagcctat ctgtattatt tacccttttt ttaaccgctt gcgaacaacc
     7921 taattctacc aaaacacaga gctcagcaga atcgccagtt caagtgaaag aagagtcaaa
     7981 agaagaagtt aaacctgctg ataccggcgc tcaagattat aaaatgttac gggaatggca
     8041 agacactcaa gaaaaagcct taaatgatgc aattaaagcg gcaacagaaa cacttactga
     8101 caaacaaaaa gccgattcta ccttaatgca agagacagtt aataacgcat tattagctca
     8161 aattgatcat attaagataa gtgctgaaac cctgaatatt caaaataatg aagtcaaagc
     8221 actaaaagac aaaaccttag aagtcctgac tttaggggct cagatgatcg tagaaggtgc
     8281 taaaatggag aaaaatccta caccggaagc acataaagca tttggcgagt tacaaacaaa
     8341 attgaatcaa ttagctgaag aagggcaaca gttagaaaat atattaagag ctaaatatg
//
LOCUS       DANMBQ010000101         8399 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.101, whole genome shotgun sequence.
ACCESSION   DANMBQ010000101 DANMBQ010000000
VERSION     DANMBQ010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8399
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.101"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            63..524
                     /locus_tag="PXE92_001960"
     CDS             63..524
                     /locus_tag="PXE92_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL5761174.1"
                     /translation="MRKIKLLHVILSLILGLSAAAIGSYPAIKEIGEERAKKHQDILD
                     LNRELYSAMVNRDFSALQTLLSDDFELYSSTGEVIDKQEWIKLIQKRVLEFDKVDLLS
                     TDFQGNQSSGLLRVNGEFFGIERDNVVVEMNIRTIVRNTERQIKCIVIKEV"
     gene            537..1430
                     /gene="murQ"
                     /locus_tag="PXE92_001961"
     CDS             537..1430
                     /gene="murQ"
                     /locus_tag="PXE92_001961"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HDL5761175.1"
                     /translation="MNALGQMITEQRNPNSMNIDRLSALDIVQVINQEDKQVAIAVEQ
                     CLPQIAQAVEKIVQAFEKGGRLVYVGAGTSGRLGVLDASECPPTYGVKPEMVVGLIAG
                     GERALRFPIEGAEDNREQGKVDLQAVNFSEKDVLVGIAASGRTPYVLGAMEYAKQLGA
                     TTVSIASNPNSAMAQIADIAIETVVGPEVLTGSSRMKSGTAQKLVLNMLTTASMILIG
                     KCYQNLMVDVQATNEKLKARAIRIVMQATECEREVAEDTLKLAENNAKLAIMMILGNL
                     DKQKAEDLLSQNQGRLQKALK"
     gene            complement(1514..2458)
                     /gene="prmB"
                     /locus_tag="PXE92_001962"
     CDS             complement(1514..2458)
                     /gene="prmB"
                     /locus_tag="PXE92_001962"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL5761176.1"
                     /translation="MFKYNTELLDEISALPIVNDLVTIQDMMRWGYSYFNASDLYYGH
                     GYDNAWDEAQQLVLAGLYLPFDVPETLYSSRLTRVEKERIINLICERLGSRKPVAYLT
                     NSAWFCGGEYYVDERVIVPRSPIGELIKKGFKGIIKNEPHRILDMCTGSGCIAIACAE
                     RFPEAEVDAVDLSLDALDVAQINIERHQVSHRVFPICSDLFNNLPQDKYDLIVTNPPY
                     VDEEDLGDMPEEFHHEPALALGSGKDGLDLTKRILAQAADYLNDDGVLVCEVGNSMVH
                     LIEQFPSVPFNWLEFEHGGLGVFSLTKEELVKHRHLFA"
     gene            2551..3096
                     /gene="smrB"
                     /locus_tag="PXE92_001963"
     CDS             2551..3096
                     /gene="smrB"
                     /locus_tag="PXE92_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HDL5761177.1"
                     /translation="MNDTLLDDEFALFREAAKGTKKLTQNTFVPKAEPRKKLQELREL
                     KEKADTEFYFSDEYEPLLKEENEKVKYLREDVDPYILKQLRRGDFQPELFLDLHGLTR
                     EKAKKELAALILACEREKVYCASVMTGFGTRTLKDQIPRWLVQHPKVMALHQAPKEWG
                     GDASILILVEQPENPEKMFGR"
     gene            3160..3645
                     /locus_tag="PXE92_001964"
     CDS             3160..3645
                     /locus_tag="PXE92_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/prolyl-tRNA synthetase associated
                     domain-containing protein"
                     /protein_id="HDL5761178.1"
                     /translation="MSEQTFHQLTALLDSHRARYRVVGHPSAGKSEEVAKIRGTEIGQ
                     GAKALVCKVKGNGVKQAVLAILPADYQADLTKIAEHLGGLRASLASPAEVAELTDCVF
                     GAIPPFSFHPDLLLVAEPSLFERYAELAFNAGTLERSIILNTEDYQKIVNPVLVQFAK
                     S"
     gene            complement(3647..4396)
                     /locus_tag="PXE92_001965"
     CDS             complement(3647..4396)
                     /locus_tag="PXE92_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL5761179.1"
                     /translation="MEKRFEINEQGLSIRCKLFYEKELQQIENVVIVLHGFGSSKDLK
                     SNTKFGERLSSKYKGYAALAFDFPCHGDDARKKLSVEESITYLQLVIDYAKTSLNAKN
                     LYAYGTSFGGYLTLKYLAEKGNPFRKIALRAPAVQIYHSLMNRLSEEERQKLAKGREI
                     LWGFDRQMKISQAFFDELTDITQNDYLDYAEQILILHGTEDEMVALSTSQQFADNNVI
                     ELLPIEGADHAFSNPKLMDIAIGKIVEFFAP"
     gene            4568..5431
                     /locus_tag="PXE92_001966"
     CDS             4568..5431
                     /locus_tag="PXE92_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HDL5761180.1"
                     /translation="MLQLILAILCSVTVGVLIKFARQKGIRIDQSIAVNYIVTTTMTF
                     LLLKPDYQGQSITDIIANNPTSYIFVILSITLPTIFLVQAKALEFAGIIRTDAAQRLS
                     LFLPILAAFTIFGEQVTQNKLIALLLAFVALGCLLWKGNQGMEKGGKIAIISLALVWV
                     GYGVNDILFKQIAKSGSAFPVTLSIAFIGAGCFMFIYLLLKRTQWHVPSVLTGLLLGV
                     LNFGNILFYIQAHQAMKDDPTLVFTGMNLGVICLGTFVGAFFFKEKIHKVNYLGVAIA
                     IVAIICLFYWR"
     gene            5555..6148
                     /locus_tag="PXE92_001967"
     CDS             5555..6148
                     /locus_tag="PXE92_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761181.1"
                     /translation="MKLKALSTLIASSMLYSQSFAVPPEKTAEEPQPFFNKTESGYDL
                     VFNDQNYRLIETELNGEKIQFRAFERIVYVNNPIEPDYQTINLYVPEAYYNNGEINGY
                     QADTAPIFLPNSVGGYMPAKAASYDKKRRDGSPGTILVALSKGYVVASVGARGRTLQK
                     EGKYTGKAPSAIIDSKSAAHKACRFESDHWHHSLCKI"
     gene            6503..6814
                     /locus_tag="PXE92_001968"
     CDS             6503..6814
                     /locus_tag="PXE92_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5761182.1"
                     /translation="MVIIMLSKTKSPTLFPKYQNALLQLGENIRLASKRRMFTQTLLA
                     QRTGLSRVTVRKIMNGDPTVAIGYYLMVLGVLGLEQDFTDVGKDDELGRKLQDIELLR
                     K"
     gene            6814..8055
                     /locus_tag="PXE92_001969"
     CDS             6814..8055
                     /locus_tag="PXE92_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA domain-containing protein"
                     /protein_id="HDL5761183.1"
                     /translation="MMNKRIYVFADWETFSQPELVGVLSSDVVRGKENFRFSYDNEWL
                     SSPYVQQIDPNLYLYPGEQYSTDTQNFHIFLDSCPDRWGRLLMKRREAALASQENRKP
                     KLLIESDYLLGVHDMNRMGALRFKTELNGPFLDNNTRLAAPPLSSLRELEFAAIQLES
                     SDNVDDPDYLKWLHMLISPGSSLGGARPKASVIDELNQLWIAKFPSRYDDYDIALWEY
                     LAYRLAIQAKIEMATCRIERFNQEHHTFLTQRFDRHCGKRRHFTSALTQLGYYDGDYE
                     ASYLEIAQFLTESGSNTRIDLAQLWRRIVFNIAISNTDDHLRNHGFIYAQEGWILSPA
                     YDLNPVPLSQGLHLNITDSDNRLDYQLAFDVADFFQLSKQQAVQIYDEVLKEINNWQN
                     VAKEIGIPRQEQEQMKFAFNV"
BASE COUNT         2615 a         1573 c         1802 g         2409 t
ORIGIN      
        1 catagataat atttaatgag aaaaatgatt tctaatataa ctaaatttaa taaggaagca
       61 caatgagaaa aatcaaatta ttgcatgtta ttttatcttt aatattaggg ctttctgcgg
      121 cagcgattgg aagttatccg gcaataaaag agattggcga ggagcgggca aaaaaacatc
      181 aagatatatt agatttaaat agagaacttt atagtgcaat ggtgaaccgt gatttttcgg
      241 ctttgcaaac attactaagc gatgattttg agctttattc atcaacaggt gaagtgattg
      301 ataagcaaga atggatcaaa ttaatccaaa agagagtatt ggaatttgat aaggttgatt
      361 tgctatctac cgattttcag gggaatcaat catctggatt attaagagta aatggtgagt
      421 tttttgggat agagcgggat aatgtggtgg tagaaatgaa tattcgaacc attgtgagaa
      481 atacagaacg ccaaattaaa tgtattgtga ttaaagaggt ttaagtgtcg caactattga
      541 atgccttagg gcagatgatt accgaacaac gtaatccgaa ttcgatgaat attgaccgcc
      601 tttcagcgtt agatatagtc caagtcatca accaagaaga caaacaagta gcgattgcgg
      661 tggagcagtg cctgcctcaa attgcacaag cggtggaaaa aattgtgcaa gcctttgaga
      721 aaggtggacg attggtttat gtcggtgccg gcacgagcgg aagattaggg gtgcttgatg
      781 cttcggaatg tccgcccact tatggcgtaa aacctgaaat ggtggttgga ttaattgccg
      841 gtggtgagcg ggcattacgt ttcccgattg aaggggcgga agataatcgt gagcaaggca
      901 aagtagattt acaagcggtc aattttagcg aaaaagatgt attggtcggg attgcagcca
      961 gtgggcgaac gccttatgtg ttaggggcga tggaatatgc taagcaactt ggtgcgacca
     1021 cggtgtcgat tgccagtaac ccaaattcgg caatggcaca aattgcggat attgcgattg
     1081 aaaccgttgt cgggccggaa gtgctaaccg gttccagccg tatgaaatcc ggcacagctc
     1141 aaaaattggt attgaatatg ctcactactg cgtcgatgat tttaatcggt aaatgctacc
     1201 aaaatttaat ggtagatgtg caagcaacta atgaaaaact caaagctaga gcaattcgga
     1261 ttgtgatgca agcgacagaa tgtgaacgag aagtggctga agatacacta aaattagccg
     1321 aaaataacgc taaattggca attatgatga ttttaggtaa cttagataag cagaaagccg
     1381 aagatttatt aagccaaaat caagggcgat tacaaaaagc gttaaaatag aagtatgtct
     1441 gctctcccct tgtgggagag agacagatca atcattcatt cagaatgatt gatcagagag
     1501 aggggaggca gatttaagca aataaatggc gatgtttcac tagttcttct ttggttaaac
     1561 tgaacacccc taagccaccg tgttcaaatt ccagccagtt aaacggcaca ctggggaatt
     1621 gttcgattaa atgcaccata ctgttgccga cttcgcagac tagcacgcca tcatcattta
     1681 agtaatcagc ggcttgagca agaatccgct tggttaaatc taacccatct ttgcccgagc
     1741 caagagctaa tgccggctcg tgatggaact cttcgggcat atcgcctaag tcttcttcat
     1801 caacataagg cggattagtc acaattaagt cgtatttatc ttgcggtaaa ttgttaaaca
     1861 gatcggaaca gatcgggaaa actcggtgag acacctgatg acgctcaata ttaatttgag
     1921 caacgtctaa ggcatcaagg gaaagatcaa ccgcatcgac ttctgcttcc ggaaaacgct
     1981 cggcacaggc aatcgcaata caaccgctgc cggtacacat atctaaaatt cgatgtggct
     2041 cgtttttgat aatgccttta aacccttttt tgatcagctc accaatcggt gaacgtggca
     2101 cgatcacacg ctcatcgaca taatattcac cgccacaaaa ccaagccgag ttggtaaggt
     2161 atgctacagg tttgcgagag cctaaacgct cacagattaa attgatgata cgttctttct
     2221 caactcgagt taagcgagag gaataaagtg tttccggtac atcaaacggc aaataaagcc
     2281 ctgccaacac taattgttgt gcctcgtccc acgcattatc gtagccgtgc ccgtaataaa
     2341 gatcagaggc attaaaatag ctataccccc aacgcatcat atcttgaata gtgactaaat
     2401 cattcacaat gggcagggcg gaaatttcat caagaagttc ggtattatat ttaaacattg
     2461 gcgtgccttt tttcgtattg ttaaaatggc tgtgttatac cacattttgc tttgtgttag
     2521 aatgtaaaaa tgaataagaa ggaaaagata atgaacgata cgttattaga cgatgaattt
     2581 gcattattca gagaggcagc aaaaggcacg aaaaagctga cacaaaatac ctttgtgccg
     2641 aaagcggaac ctcgcaagaa attgcaagaa ttgcgagaat taaaagaaaa agctgataca
     2701 gaattttatt tctcggatga atatgagcct ttgctgaaag aagaaaatga aaaagtgaaa
     2761 tatctgcgag aagatgttga tccttatatt ctcaaacagt tacggcgagg cgatttccaa
     2821 cccgagctgt ttttagatct gcatggttta actcgagaaa aagcgaagaa agagttggca
     2881 gcgttgattt tagcctgtga gcgggaaaag gtatattgtg ccagtgtgat gaccggcttt
     2941 ggcactcgca cgctcaaaga tcaaattcca cgctggttgg ttcagcaccc aaaagtaatg
     3001 gcgttgcacc aggccccgaa agagtggggc ggagatgcct ctattctaat tttggttgag
     3061 cagcctgaaa atcctgaaaa aatgtttggg cgttaaaatt cggctgaatt gccaattttt
     3121 tattaaaaac gaccgcttgt gtatcattaa ggagaaatga tgtcagaaca aactttccac
     3181 caacttacag cattattaga ttcgcatcga gctcgctatc gagtggtagg acatccttct
     3241 gccgggaaat cggaagaagt ggcaaaaatt cgaggaacag aaatcgggca aggggcgaaa
     3301 gccttagttt gcaaggtaaa aggcaatggg gtaaagcaag ctgtgcttgc tatattacct
     3361 gctgattacc aagcggattt aacaaaaatt gcagagcatc ttggtgggtt aagagcctca
     3421 cttgccagcc cggctgaagt ggcagaattg accgattgtg tatttggggc aattccgccg
     3481 tttagctttc accccgattt attattggtg gctgagccaa gtctgtttga gcgttatgct
     3541 gaattagcct ttaatgccgg tacgttggaa cgttcgatta ttctgaatac cgaggattac
     3601 caaaagatag ttaatcctgt gttggttcaa ttcgccaaaa gctaggttat ggggcgaaaa
     3661 actccacgat tttgccaata gcgatatcca ttaatttagg gttagaaaaa gcgtgatctg
     3721 ccccttcaat cgggagcagt tcaatcacgt tattatcggc aaactgctgt gaagtgctta
     3781 acgccaccat ttcatcttcc gtgccgtgca gaattaaaat ttgctcggca taatccaaat
     3841 aatcgttttg ggtaatatcg gttagctcat caaaaaaggc ttggctgatt ttcatctggc
     3901 gatcaaaccc ccacaaaatt tctcgccctt tggcaagttt ttgccgttcc tcttctgaca
     3961 agcggttcat taacgaatgg tagatttgta ctgccggtgc ccgcaatgca attttccgaa
     4021 acggattgcc tttttccgcc agatatttca aggttaaata gccgccaaaa ctagtgccgt
     4081 aggcatacag atttttagca ttcaggctgg ttttggcata atcaatcacc agttgcagat
     4141 aagtaatgga ttcctcaacc gagagttttt tacgggcatc atcaccgtgg caagggaaat
     4201 caaaggcaag ggcagcgtag cctttatatt ttgagctaag gcgttcccca aatttggtat
     4261 tcgatttcag atctttagac gaaccaaagc cgtgcaacac aatcactaca ttctcgatct
     4321 gctgcaattc tttttcataa aacagtttac agcgaatgct gagaccctgt tcattaatct
     4381 caaagcgttt ttccatttta tgttaagtat tgaaattgaa gatgacaaaa ttttagcact
     4441 atttgagtgc aagcggtcgg atctctcgca aaatttgcaa attttccggt aaatttaacc
     4501 gcttgtacta gccaaaattt aagcatattt atagaataca gccttcgttt ttaaaaggag
     4561 aaatgaaatg ttacaactta ttttagcgat tttatgtagc gtgactgtag gcgtgttgat
     4621 taaattcgcc cgccaaaaag ggattcgtat cgaccaaagt attgcggtga actatatcgt
     4681 gactaccacg atgacgtttt tattactaaa accggattac caagggcagt cgattaccga
     4741 tattattgct aataacccga cttcctatat ttttgtgatt ttaagtatca cattgcctac
     4801 tattttcttg gtgcaagcaa aagccctaga gtttgccggt attatccgaa ccgatgcggc
     4861 acaacgttta tcgctgttcc tgccgatttt ggcggcattc accatttttg gtgagcaggt
     4921 tacgcaaaat aaattaattg cacttctgtt agctttcgtg gcactcggtt gcttattatg
     4981 gaaaggcaat cagggaatgg aaaaaggcgg aaaaattgcg attatcagcc ttgctctggt
     5041 ttgggtaggc tatggcgtga acgatatttt atttaaacag attgccaaat caggctctgc
     5101 tttccctgtc accctttcga ttgcctttat cggtgcaggc tgttttatgt ttatctattt
     5161 gctacttaaa cgcactcaat ggcatgttcc aagtgtctta accggcttat tgctaggcgt
     5221 gttgaacttc ggcaatattc tgttctatat tcaagctcac caagccatga aagatgaccc
     5281 aactttagtc ttcactggaa tgaacttagg ggtaatttgc ttaggcactt tcgttggagc
     5341 attcttcttt aaagagaaaa tccacaaagt gaactactta ggcgtggcga ttgcgattgt
     5401 ggcgattatt tgcttgtttt attggcggta aatatacttt ccaaaattaa gggcgaacat
     5461 aatgttcgcc cttaattttt gagtaatata gtgtaaaata ttcaataaat tcgaccgctt
     5521 gttgtaccga ttcatatttc ataaaggaca aaaaatgaag ctaaaagcct tatctacact
     5581 cattgcctct tcaatgctat atagtcagag ttttgctgta ccgccggaaa aaacagctga
     5641 agagccacag ccctttttca ataaaaccga atctgggtat gatttagtct ttaatgatca
     5701 aaactatcgt ttaattgaaa cggaattaaa tggcgagaaa atccaattcc gtgcctttga
     5761 gcggattgtg tatgtgaaca atccgattga gccagattac caaacaatta atctgtatgt
     5821 gccggaagct tactacaata atggcgaaat caatggctac caagcggata ccgccccgat
     5881 cttcttgcca aattcagtgg ggggctatat gccggcaaaa gcggcaagtt atgataaaaa
     5941 aagacgtgac ggttcaccag gtacgatttt ggtggcgtta tctaaaggct atgtggtggc
     6001 aagtgtggga gcaagaggac gcacgctaca aaaagaggga aaatacaccg gcaaagcacc
     6061 ttctgccatt attgattcaa aatccgccgc ccataaagcg tgtcggttcg agtccgacca
     6121 ctggcaccac tcactatgta aaatttagtt ttacatagtt tgctgtaagc atttgaattt
     6181 tgaatcgttt gtgtaggatt gttcaaatca tattcgcaaa tacacagtta ctacgatgta
     6241 tccagccaat acatccattg ggattttccg tccgaatttc agacgttcta gatcttacac
     6301 attctttcaa gtttgtaaag cctgaaaatc attttttaga ttgattttat ttgaaaaaat
     6361 ctattttttc ttttaattca aatttagtca aaacttcacc agatattttt ttccgaaaaa
     6421 ccctctctac ctattttact gtttacataa ctgctcttgc aattgctata aatggacatt
     6481 ataatttcca aaaaacataa aaatggtaat aataatgctc agtaaaacaa aatcaccaac
     6541 tctgtttcct aagtaccaaa atgccttgct tcaacttgga gaaaatatta ggctagcctc
     6601 aaaaaggaga atgtttactc aaacattatt ggctcaaaga actgggctta gccgtgtaac
     6661 agtgagaaaa attatgaatg gtgatccaac tgttgcgatt ggatactacc taatggtttt
     6721 aggtgttctc ggtctagaac aagatttcac tgatgttgga aaggatgatg agttaggacg
     6781 taaattgcaa gatattgaat tattaaggaa ataatgatga ataaacgaat ttatgtgttt
     6841 gcagattggg aaactttttc acagcctgaa ttagttgggg tgctttcttc tgatgtagtg
     6901 agaggcaaag aaaatttccg ttttagctac gataacgagt ggttaagttc accctatgta
     6961 cagcagattg atcctaactt atacctttac cctggagagc aatacagtac agatacacaa
     7021 aattttcata tctttttaga ttcttgccct gatagatggg gtagattgtt aatgaaacgt
     7081 cgggaggcag ctctagctag tcaagagaat cgtaaaccta agttactaat agaaagtgat
     7141 taccttttag gcgtacacga tatgaataga atgggggctt tacgttttaa aactgaattg
     7201 aatggtccat ttttggacaa taatactcgt cttgcagcac caccactgtc ttccttaaga
     7261 gaattagaat ttgcagcaat acaacttgaa agcagtgata atgtggacga tccggattat
     7321 ttaaaatggc ttcatatgtt gatatcacca gggtcgtcac taggcggagc tagaccaaaa
     7381 gcttcggtaa tagatgaact aaatcaacta tggattgcca aatttccaag tcggtacgat
     7441 gattatgata ttgctctttg ggaatattta gcttatcgac tggctattca agccaaaatt
     7501 gaaatggcta cttgtagaat tgaacgcttt aaccaagaac accatacttt tttgacacaa
     7561 agatttgatc gacattgtgg aaaacgtcgc cattttacgt cagcattaac ccagctgggt
     7621 tattatgacg gagactatga ggcaagctac cttgagattg ctcaattttt aacagaaagt
     7681 ggttcaaata ctcgaattga cttggctcaa ctatggagaa gaattgtatt caatattgct
     7741 atttcgaata ctgatgatca tttgcgtaac cacggattta tctacgctca agaggggtgg
     7801 atattatctc ccgcatacga tttaaaccca gtaccactat ctcaaggatt acatttaaac
     7861 ataacagaca gcgataaccg attggattat cagctcgcct ttgatgttgc tgactttttt
     7921 caattatcta agcaacaagc cgtacagatt tatgatgaag tactgaaaga aattaataat
     7981 tggcaaaatg tcgcaaaaga aattggtatt ccacgccaag agcaagagca gatgaaattt
     8041 gcatttaatg tatagtaatt gacttgtgga accaatcatc gtagtctatg ttctaaaaaa
     8101 gtagcgttac cttaataacg caatgagttg ttggctcatt gtcaatctga tattaatcta
     8161 ggatgtaaag gcctagcggt ggcaggcacc agaaagacct gatactaatc tagggtataa
     8221 agacctagcg gtggcagaca ccagaacaaa ccaacatctt ataaaaccat tagtaacact
     8281 tgactttttt ctcaaccata tccgcaagga agcgtagcct taaaaacgca aatgtaggaa
     8341 actaatctag gcatatataa tgcctagcag atggcagaca tcagaaaaac taacattta
//
LOCUS       DANMBQ010000102         8359 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.102, whole genome shotgun sequence.
ACCESSION   DANMBQ010000102 DANMBQ010000000
VERSION     DANMBQ010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8359
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.102"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            49..1041
                     /locus_tag="PXE92_001970"
     CDS             49..1041
                     /locus_tag="PXE92_001970"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HDL5761184.1"
                     /translation="MKKSFILQQQEISFVKNTFTQYLIDKLGIIEVQGPILSEVGNGM
                     QDNLSGIEKAVKVNVKCIPSATYEVVHSLAKWKRHTLARFGFKEGEGLFVHMKALRPD
                     EDSLDRTHSVYVDQWDWEKVIPEGRRNFDFLKETVNEIYKAIRLTELAVEARFDIPSV
                     LPKQITFVHSEDLVQRYPNMTSKERENAICKECGAVFLIGIGGKLSDGKPHDGRAPDY
                     DDWTTESEQGYKGLNGDILVWNEELGTAFELSSMGIRVDETALRLQVALTGDEDRLEM
                     DWHKDLLAGRLPLSIGGGIGQSRLVMFLLRKKHIGEVQSSVWPKAVFEEFENIL"
     gene            complement(1165..1584)
                     /gene="atpC"
                     /locus_tag="PXE92_001971"
     CDS             complement(1165..1584)
                     /gene="atpC"
                     /locus_tag="PXE92_001971"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDL5761185.1"
                     /translation="MASQFELTVVSAERKIFEGTVTSVRVSGTDGELGVYAGHAPLLT
                     AIKPGMVKFTLADGKEEFIYVSGGFLEVQPTVVTVLADTAIRGEELDEQRILAAKRKV
                     EETLSKTSDADMTAKLAREIAKLRVYELTKTKLANKR"
     gene            complement(1612..2985)
                     /gene="atpD"
                     /locus_tag="PXE92_001972"
     CDS             complement(1612..2985)
                     /gene="atpD"
                     /locus_tag="PXE92_001972"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011978979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDL5761186.1"
                     /translation="MATGKIVQIIGAVIDVEFPQDAVPKVYDALKVESGLTLEVQQQL
                     GGGVVRCIALGSSDGLKRGLKVENTNKAIEVPVGTKTLGRIMNVLGEPIDEAGPIGEE
                     ERWTIHRAAPSYEEQANSTELLETGIKVIDLVAPFAKGGKVGLFGGAGVGKTVNMMEL
                     IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVA
                     LTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVL
                     QERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDP
                     LDSTSRQLDPLVVGEEHYNVARGVQGTLQRYKELKDIIAILGMDELSEDDKRLVARAR
                     KIERFLSQPFHVAEVFNGVPGKFVPLKETIRGFKGILEGEYDHIPEQAFYMAGSIDEV
                     VERAKQM"
     gene            complement(3006..3872)
                     /gene="atpG"
                     /locus_tag="PXE92_001973"
     CDS             complement(3006..3872)
                     /gene="atpG"
                     /locus_tag="PXE92_001973"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDL5761187.1"
                     /translation="MAGAKEIRTKIASVRNTQKITKAMEMVAASKMRKTQERMAASRP
                     YAESIRKAISHIAKGNIEYKHPFLTPRPVKKVGYLVVSTDRGLCGGLNINLFKTVLHE
                     LKEKDDQGVKSRLAVVGNKGISFFNPMGLEIKGHINGLGDTPAMEDLVGIVNGMVNAY
                     REGEIDEVYVVYNRFINTMSQKPTVQQLLPLPALENDSLEQTGSWDYLYEPNPQALLD
                     SLLVRYLESQVYQAVVDNLASEQAARMVAMKAATDNAGNLINELQLVYNKARQASITN
                     ELNEIVAGAAAI"
     gene            complement(3898..5439)
                     /gene="atpA"
                     /locus_tag="PXE92_001974"
     CDS             complement(3898..5439)
                     /gene="atpA"
                     /locus_tag="PXE92_001974"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDL5761188.1"
                     /translation="MQLNSTEISELIKKRIAQFNVVSEAQSTGTIVSVSDGVIRIHGL
                     SDVMQGEMIALPGNRYAIALNLERDSVGAVVMGPYADLAEGMQVQCTGRILEVPVGRG
                     LLGRVVNTLGQPIDGKGEIQNDGFSPIEVIAPGVIDRQSVDQPVQTGYKAVDSMVPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTIANVVRKLEEHGAL
                     ANTIVVVASASESAALQYLAPYAGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERASRVNADYVERFTNGAVKGQTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLESGLFNAGIRPAVNPGISVSRVGGSAQTKLVKKLAGG
                     IRTALAQYRELAAFAQFASDLDEATRKQLSHGQKVTELLKQKQFEPMSVAQLGLSLAA
                     AEYGYLDDIPVERVGSFEANLLAYAQSNYGEFMQELSKSGNFNDEIKDKLNEILSGFK
                     KNSAW"
     gene            complement(5452..5985)
                     /gene="atpH"
                     /locus_tag="PXE92_001975"
     CDS             complement(5452..5985)
                     /gene="atpH"
                     /locus_tag="PXE92_001975"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDL5761189.1"
                     /translation="MSELSTVARPYAKAAFDFALEQGQLEQWQQMLTFSAAVANDEQV
                     ASFLNSSLASGQISETFIKICGEQLDQYGQNFIRVMADNKRLAVLPAVLNAFLELRAE
                     QESIKDVEVVSADKLTDAQEAKIANAMEKRLGTKVRITSSIDSSLIAGVIIRYDDVVI
                     DGSSRGQLNRLSQELSL"
     gene            complement(5999..6469)
                     /gene="atpF"
                     /locus_tag="PXE92_001976"
     CDS             complement(5999..6469)
                     /gene="atpF"
                     /locus_tag="PXE92_001976"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDL5761190.1"
                     /translation="MNLNATLIGQLIAFALFVAFCMKFVWPPLIRVIEERQANIASAL
                     ASAEKAKQEQADSKAAADQEILRAKEEAQNIIDLATKRRNEILESVQAEAEVERQRII
                     EQGYAEVESERKRVQEELRQKVAALAIAGAEKIVGRSVDAAANNDIIDKLVAEL"
     gene            complement(6530..6784)
                     /gene="atpE"
                     /locus_tag="PXE92_001977"
     CDS             complement(6530..6784)
                     /gene="atpE"
                     /locus_tag="PXE92_001977"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDL5761191.1"
                     /translation="MESVITATIIGASILLAFAALGTAIGFAILGGKFLESSARQPEL
                     ASSLQTKMFIVAGLLDAIAMIAVGISLLFIFANPFIDLLK"
     gene            complement(6902..7690)
                     /gene="atpB"
                     /locus_tag="PXE92_001978"
     CDS             complement(6902..7690)
                     /gene="atpB"
                     /locus_tag="PXE92_001978"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDL5761192.1"
                     /translation="MAGTTAEYISHHLSFLSTGEGFWAVHLDTLFFSLVAGAIFLWVF
                     SRVAKNATTGVPGKLQCFVEIVIEWVNGLVKDNFHGPRNVIAPLALTIFCWVFIMNAI
                     DLIPVDFLPQLANLFGIHYLRAVPTADISATLGMSICVFALILFYTVKSKGFGGLVKE
                     YTLHPFNHWAFIPVNFILETVTLLAKPISLAFRLFGNMYAGELIFILIAVMYMADNFA
                     LQALGIPLHLVWAIFHILVITLQAFIFMMLTIVYLSIAYNKADH"
     gene            complement(7713..8096)
                     /locus_tag="PXE92_001979"
     CDS             complement(7713..8096)
                     /locus_tag="PXE92_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HDL5761193.1"
                     /translation="MSAVINRAKSQYKQALKVEFFLLCVFALGVSLWKMNFNFSFLGG
                     ALASFLPHLVFVYWVFFKKSAKNQSKMTAFYRGEGMKWLVTIILVIGCFKLIPALDVV
                     LFFVGYFIALFLNNMIPFVLSKHHH"
BASE COUNT         2501 a         1867 c         1552 g         2439 t
ORIGIN      
        1 aagcacgaga aataaaaaat caacattctt taattaggaa agcaaacaat gaaaaaatct
       61 tttattttac agcaacaaga aatcagtttt gttaagaaca catttactca atatttaatt
      121 gataaattag gcattattga agttcagggg cctattttga gcgaagtcgg caacggtatg
      181 caagacaacc tttccggtat cgaaaaagca gtaaaagtaa acgtaaaatg tattccaagc
      241 gctacttatg aagtggttca ttctcttgca aaatggaaac gccacacctt agctcgtttt
      301 ggatttaaag aaggagaagg gttatttgtt catatgaaag ctcttcgccc tgatgaagat
      361 tctttagatc gcacacactc ggtatatgtt gaccaatggg actgggaaaa agtcattcct
      421 gaaggtcgcc gcaacttcga tttcttaaaa gaaacggtaa acgaaatcta taaagcaatt
      481 cgtttaaccg aattagcggt ggaggctcgt ttcgatattc catctgtatt gcctaaacaa
      541 attactttcg ttcacagcga agacttagtg caacgctatc cgaatatgac cagcaaagag
      601 cgtgaaaatg ctatctgtaa agagtgcgga gcggtgttct taatcggtat cggcggcaaa
      661 ttatcagacg gtaaacctca cgatggacga gctccggact atgatgactg gacaaccgag
      721 tccgaacaag gctacaaagg cttaaacggc gatattttag tttggaacga agaactcggc
      781 acagcctttg aactttcctc aatgggtatt cgtgtagatg aaaccgcctt acgcttacaa
      841 gttgctttaa ctggcgacga agaccgcctc gaaatggatt ggcacaaaga tttattagcc
      901 ggcagactcc cgctttctat cggcggcggt atcggtcaat ctcgcttagt gatgttctta
      961 ctacgcaaaa aacacatcgg tgaggtgcaa tccagtgtct ggccaaaagc ggtatttgaa
     1021 gagtttgaga atattcttta ataaaacaaa aaagcgaacc ttagggttcg cttttgcttt
     1081 ctacaagcgg tcttattttg caaaaaattt actgttttta accgcttgta aaacaaaacc
     1141 ccactttcgt ggggtttttt gatattaacg tttattcgct aatttggttt tagtgagttc
     1201 gtaaacacgc agtttcgcaa tttctctcgc taacttcgcg gtcatatccg catcgctggt
     1261 ttttgaaagt gtttcttcta ctttgcgttt tgcggcaaga atacgctgtt cgtctagttc
     1321 ttcaccacga attgcggtat cagccaacac tgttactacg gtcggttgta cttcaaggaa
     1381 accacctgaa acgtagataa actcttcttt gccgtcagct aaagtgaatt taaccattcc
     1441 cggtttaatt gcggttaata acggtgcatg ccctgcatac acccctaatt caccatctgt
     1501 ccctgaaaca cgcacgctgg taactgtgcc ttcaaagatt ttacgttctg cactcactac
     1561 cgtgagttca aattgagatg ccatgttgtt ctcctttagt ttagaacaaa attacatctg
     1621 ttttgctctt tcaaccactt cgtcaattga acccgccata tagaacgctt gttccggaat
     1681 atggtcgtat tcgccttcta aaatgccttt aaagccacga attgtttctt ttaacggtac
     1741 gaatttgccc ggtacgccgt tgaatacttc cgcaacgtgg aatggttgtg aaaggaaacg
     1801 ttcgatttta cgcgcacgag caacaaggcg tttgtcgtct tccgataatt catccatacc
     1861 caaaattgca atgatgtctt ttaactcttt ataacgttgt aatgtacctt gtacaccacg
     1921 agcaacgtta tagtgttcct caccaaccac gagtggatct aactgacgag aggttgagtc
     1981 aagagggtca accgccgggt aaataccgag tgaagcgata ttacggctta ataccaccgt
     2041 tgagtctaag tgggcaaagg tagttgccgg agacgggtca gttaagtcat ccgccggaac
     2101 atataccgct tgcacagagg taatagagcc ggttttggtt gaggtaatac gctcctgtaa
     2161 tacgcccatc tcttctgcaa gagtcggctg ataacctacc gcagacggca tacgacctaa
     2221 taacgcagat acttcggtac cagctaaagt ataacggtag atgttatcca cgaagaataa
     2281 tacgtcacga ccttcatcac ggaatttttc tgccatggtt aagccggtta atgccacacg
     2341 cagacggttg cccggtggtt cgttcatttg accgtaaacc agcgatactt tgtctaatac
     2401 gttagagtct ttcatttcgt ggtagaagtc attaccctca cgagtacgct cacctacacc
     2461 ggcgaatacc gagtaaccgc tatgttcgat agcgatgtta cggattaact ccatcatatt
     2521 tacggtttta cctacacccg caccaccgaa taagccaact ttaccaccct tagcaaatgg
     2581 agcaactaag tcgataactt tgataccggt ctctaaaagc tcggtgctgt tcgcttgttc
     2641 ttcgtagctt ggtgctgcac ggtggattgt ccaacgttct tcttcaccga ttgggcctgc
     2701 ttcatcaatt ggctcaccta atacgttcat aatacgaccg agtgtttttg taccaaccgg
     2761 tacttcaatc gctttattcg tattttcaac ttttaagcca cgttttaaac catcagatga
     2821 accaagtgcg atacaacgga ccacaccgcc acctaattgt tgttgaactt caagggttaa
     2881 tcctgattca acttttaatg catcataaac ttttggtact gcatcttgcg gaaactcaac
     2941 atcgattacc gcaccgatga tctgtacaat ttttcccgtt gccattaccg ttcctctatt
     3001 cattgttaaa ttgctgcggc acccgcgaca atttcattta attcattcgt aatacttgct
     3061 tgacgagctt tgttatacac taactgtaac tcattaatca gattacctgc gttatcggtt
     3121 gctgctttca ttgccaccat tcgagcagcc tgttcagacg caagattatc taccactgcc
     3181 tgataaactt gagattctaa ataacgaacc agtaagctgt ctaataacgc ttgtggattt
     3241 ggttcataga gataatccca agaaccagtt tgctctaatg agtcattttc cagtgcaggc
     3301 aaaggaagca actgttgtac tgtcggtttt tgtgacatcg tgtttataaa acggttatat
     3361 accacataca cttcatcaat ttcgccttca cggtaggcat ttaccatacc attaacaata
     3421 ccgactaaat cttccattgc cggtgtatca cccaatccat tgatatgacc tttaatctct
     3481 agccccattg ggttaaaaaa ggagatccct ttatttccca ccacagcaag tcgagactta
     3541 acaccttggt catctttttc tttcaattca tgtaaaacgg ttttaaataa attgatattt
     3601 aagccaccac ataaaccgcg atcggttgaa actactaaat agccaacttt ttttaccgga
     3661 cgtggggtca aaaatgggtg tttatactca atgttacctt tggcaatatg gctaattgcc
     3721 ttgcgaatac tttcagcata agggcgagaa gccgccatac gctcttgggt tttacgcatt
     3781 tttgatgcgg caaccatttc catcgctttg gtaatttttt gtgtattacg aacacttgca
     3841 attttggttc ttatctcttt agcacctgcc atattatttc tccgctaaaa agttagatta
     3901 ccaagcactg ttctttttga aaccagataa aatctcgttc aatttatctt taatttcatc
     3961 gttgaaattg ccggattttg acagttcttg cataaactcg ccgtagttac tttgagcata
     4021 agctaataag tttgcttcaa atgagccaac acgctcaacc ggaatatcat ctaagtaacc
     4081 gtattcagct gctgctaatg ataaacctaa ttgtgcaaca gacatcggct cgaattgttt
     4141 ttgtttcaac aattcagtta ctttttgacc gtgtgaaagc tgtttacgtg ttgcttcatc
     4201 aagatctgat gcgaactggg caaatgccgc taattcacgg tattgagcaa gtgcggtacg
     4261 gataccaccg gcaagcttct taaccagttt agtttgtgca gaaccaccta cacgggaaac
     4321 cgagataccc gggtttaccg cagggcgaat accggcattg aataagcctg attctaagaa
     4381 aatctgacca tcggtaattg aaattacgtt agtcggtacg aaggctgaaa cgtcacctgc
     4441 ttgggtttcg atgatcggta atgcggttaa agaaccggtt tgacctttca cagcaccgtt
     4501 agtgaaacgt tctacatagt ctgcatttac acgagacgca cgctctaata agcgagagtg
     4561 tagatagaac acatcacccg ggaatgcttc acgacccggt ggacggcgta ataacaatga
     4621 aatttgacgg taagcaactg cttgcttaga caaatcatcg taaacgatca acgcatcttc
     4681 accacggtca cggaagtatt cacccattgc acaacctgca taaggtgcaa gatattgtaa
     4741 tgcagcagat tcagacgcag aagccactac aacgatagtg ttcgctaatg caccgtgttc
     4801 ttctaattta cgcaccacgt tggcgatagt tgatgccttt tgaccgattg caacgtagat
     4861 acatttaatg cctgaatcac gttggttgat gatcgcatca atcgctaatg cggttttacc
     4921 ggtttgacgg tcacctataa tcaattcacg ctgaccacga ccgattggta ccattgagtc
     4981 caccgctttg taaccggttt gaaccggttg atcaaccgat tgacggtcga taacgcccgg
     5041 tgcgatcact tcgattggtg agaaaccgtc attttggatt tcgcctttac catcgattgg
     5101 ctgacctaag gtatttacaa cacgacctaa taagccacga ccaaccggca cttctaaaat
     5161 acgaccggta cattgtactt gcataccttc tgctaaatcg gcataaggtc ccattacaac
     5221 tgcaccaaca gaatctcttt ctaagtttaa tgcaatcgca taacgattgc ccggtaatgc
     5281 aatcatttca ccttgcatta catcagataa gccgtggata cgaataaccc cgtcacttac
     5341 cgaaacgatt gtccctgtgc tttgagcttc actcaccaca ttaaactggg caatacgttt
     5401 tttaatcaat tcactaattt cagttgaatt tagttgcatt ttttattcct cttacaagct
     5461 caactcttga ctcaagcggt ttagctgtcc acgactacta ccatcaatca ctacatcatc
     5521 ataacgaatg atcacacccg caattaatga actatctatt gatgaagtaa tacgtacttt
     5581 cgttccgagt cgcttttcca tcgcattggc aatttttgct tcttgtgcat ctgttaattt
     5641 atctgcagaa acaacctcaa catctttaat tgattcctgt tctgctctta attctaaaaa
     5701 tgcattcaat accgcaggta atactgctaa acgcttgtta tcagccatta cgcgaatgaa
     5761 attttgccca tattgatcta attgttcgcc acaaatcttg ataaacgtct cagaaatctg
     5821 accgcttgca agtgatgagt taagaaaact agctacttgc tcatcgttag cgacggcggc
     5881 agaaaaagtt aacatctgct gccattgttc caattgacct tgttctaaag caaaatcgaa
     5941 agccgcttta gcataggggc gagctactgt gcttaattct gacatctgcc cctcctagtt
     6001 atagttccgc aactagctta tcaataatat cgttgttcgc agcggcatcc accgaacgac
     6061 ccacgatttt ttctgcacca gcaatagcca atgcagccac tttttgacga agctcttctt
     6121 gaacgcgttt acgttcgctt tcaacttccg cgtaaccctg ttcaataata cgttgacgtt
     6181 ccacttcagc ttctgcttgt acagattcta aaatttcatt acgacgtttt gttgctaaat
     6241 caatgatatt ttgtgcttct tctttcgctc taaggatttc ttgatccgca gccgctttag
     6301 aatcagcttg ttcttgtttc gctttttcgg cagaagccaa tgcgctagca atatttgcct
     6361 gacgctcttc tatcactcga attagcggtg gccatacaaa cttcatacag aacgcaacaa
     6421 aaagtgcgaa cgcaatcagt tgaccaatta gtgttgcatt taaattcaca acgccctcct
     6481 aaaagccggt aaagttattc aactgaataa cggttaatca aatcccgact tatttcaata
     6541 aatcaatgaa cgggtttgcg aagatgaata gtaatgaaat acctacagcg atcattgcga
     6601 tagcatctaa aagaccagca acgataaaca ttttagtttg taagcttgat gctaattccg
     6661 gctgacgtgc agatgactct aagaatttgc cacctaagat agcaaagccg atagcagtac
     6721 caagagcagc gaaagctaat aaaattgaag caccaataat tgttgctgtg attactgatt
     6781 ccataatgtt ctccattaga ttgaggaatt agcccgaagg ctgggttgtt gataaaaata
     6841 catatcaagc ggtcaatatt ttgcaaaaat ttgcgaaaaa cctaccgctt gtaaggctag
     6901 tttaatgatc cgctttgtta taagcgatac tcaaataaac aatcgttagc atcataaaaa
     6961 taaaggcttg aagcgtaata actaaaatat ggaaaatcgc ccaaaccaag tgtaatggaa
     7021 tccccaacgc ctgtagagcg aagttgtctg ccatatacat tactgcaata aggataaaga
     7081 ttaactcacc tgcatacata ttaccgaata aacggaacgc caatgaaatc ggttttgcca
     7141 aaagcgttac cgtttcaaga ataaagttta ccggaatgaa tgcccagtgg ttaaacgggt
     7201 gtaacgtgta ttctttcact aaaccgccaa aacctttcga tttcaccgtg taaaataaaa
     7261 ttaacgcaaa tacacaaata gacataccca gtgttgcact aatatctgcc gttggtactg
     7321 cacgcaaata gtgaatacca aacagattgg ctaactgtgg taagaaatcg accgggataa
     7381 ggtcgatcgc attcataata aacacccaac agaaaatcgt taatgctaat ggtgcaatta
     7441 cattgcgagg tccgtggaag ttatccttca ctaaaccgtt tacccactca ataacaatct
     7501 caacaaaaca ttgcaatttt cccggaacgc ccgttgttgc attttttgct acacgcgaga
     7561 acacccataa aaaaatcgca cctgccacta aagagaagaa cagtgtatct aaatgcactg
     7621 cccaaaagcc ttcacctgtc gataaaaaac tcaagtgatg gctaatatat tctgctgtcg
     7681 ttccagccat aacatatcct tttaaattaa aattagtggt gatgtttgct taatacaaac
     7741 gggatcatat tatttaaaaa taatgcgata aaataaccca cgaaaaacaa cacaacatct
     7801 agagcaggga taagtttaaa acagccgatc accaaaataa tagtaaccaa ccatttcatt
     7861 ccttcaccac gatagaaagc ggtcattttt gactgatttt ttgcagattt cttaaagaaa
     7921 acccaatata caaacacaag atgaggcaaa aaactcgcta aagcaccgcc tagaaaggaa
     7981 aaattaaaat tcattttcca taaagacact ccaagtgcaa aaacgcacaa gagaaaaaat
     8041 tcaaccttta atgcttgttt atattgtgat tttgctctat tgattacagc tgacacattt
     8101 tatccttttt gaataagtaa accacacaat caggctaata attagccact gttgaatcaa
     8161 agaaaatccg tgctaaatta tactttacaa atgaattgtt gcaaccgaaa agcgacacaa
     8221 aaacttgtta ttcttcacat ttttgaaaaa aaattttatt tacgttgcat ttttttgagt
     8281 aaaaccatca aaatcagtta acaaaaaaac aacaaataga ggtgtgtgta tttttctctg
     8341 tcacattatt tcaatattt
//
LOCUS       DANMBQ010000103         8330 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.103, whole genome shotgun sequence.
ACCESSION   DANMBQ010000103 DANMBQ010000000
VERSION     DANMBQ010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8330
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.103"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(119..1483)
                     /gene="mpl"
                     /locus_tag="PXE92_001980"
     CDS             complement(119..1483)
                     /gene="mpl"
                     /locus_tag="PXE92_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HDL5761194.1"
                     /translation="MKKHIHILGICGTFMGGVAMIARELGYKVTGSDTNVYPPMSTFL
                     AAHGIEIIPNYDVAQLQPAPDLVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLL
                     KDKWVLAVSGTHGKTTTTGMLAWILDQNGIDTGFLIGGVAGNFGISARAGNSPFFVIE
                     ADEYDSAFFDKRSKFVHYTPKTLIINNMEFDHADIFDDLKAIQRQFHHLVRTMPQSGC
                     ILSAIADQNVQDTLKMGSYSQLQFIGEQNEWFAKPLNADCSQFEVFHLGVKQGEVHWS
                     IIGKHNMHNALMAIAAAHHAGVEVQGACEALGKFVNANRRLEVKGEVNGITVYDDFAH
                     HPTAIEATIDALRGKVGKNQRILAVLEPRSNTMKMGVHKDEIAPSLHDAEAVFVYQPD
                     IIAWSVSEITNVLSQPAYWSANIDDLVDLVVKEAKPTDHILVMSNGAFGGIHQKLLAK
                     LADK"
     gene            complement(1779..2534)
                     /locus_tag="PXE92_001981"
     CDS             complement(1779..2534)
                     /locus_tag="PXE92_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HDL5761195.1"
                     /translation="MKLKSFKPMFMLLSVAFLTACSSSINPETGVRDDPLEGFNRAMW
                     KVNYDYLDPYVLKPVAKGWKEYVPSPVKTGLINVANNLDEPVSFVNRLIEGEGKKAMV
                     HFNRFWINTVFGLGGLIDWASLDEGLRLNNGQRGLGESLGAHGVPSGSYIMMPAYGAT
                     TPRQGIGSAVETGYSVLTYVGSPWSIAKFVVQGVDTRSKLLEQDALLEQAQDPYVTFR
                     EAYFQNLEFKVKDGNVEQSQQEQLSEEELKNID"
     gene            2689..3006
                     /gene="metJ"
                     /locus_tag="PXE92_001982"
     CDS             2689..3006
                     /gene="metJ"
                     /locus_tag="PXE92_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HDL5761196.1"
                     /translation="MADWNGEYISPYAEHGKKSEQVKKVTVSIPIKVLEILTNERTRR
                     QIKNLRHATNSELLCEAFLHAFTGQPLPNDEDLMKDRADEIPEAAKQKMCELGIDPDE
                     WQY"
     gene            3054..3284
                     /locus_tag="PXE92_001983"
     CDS             3054..3284
                     /locus_tag="PXE92_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF997 family protein"
                     /protein_id="HDL5761197.1"
                     /translation="MYQQLTTEARWAVLLTLIYLLGWVGFAYFSPQGRGIFGFPIWFE
                     LSCIFLPVLFSLVATIVVKKVYKNIDLEVNNE"
     gene            3277..4701
                     /gene="panF"
                     /locus_tag="PXE92_001984"
     CDS             3277..4701
                     /gene="panF"
                     /locus_tag="PXE92_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HDL5761198.1"
                     /translation="MNSEMILPLIAYLIFVFGVAFYAYRKRQGGSFISEYYIGGRSMS
                     GFVLAMTTAATYVGASSFIGGPGAAYKYGLGWVLLAMIQVPAVLLSLGALGKKFALLA
                     RKHNSVTINDMLLARYQNKFVVWIAGLALLLSFFAMMTVQFIGAGRLLETTLGIPYQT
                     AVMIFAITVGLYTFIGGFRAVVLTDTIQGLVMIVGTSILLAGVIYATGGVENAMHTLE
                     AINPQLTTPYGIDERPLDFTFMTSFWVLVCFGLIGLPHIAVRSMACKNSQALHRAMII
                     GTVVIAILMFGMHLSGVLGRAVVPDLKVPDQVIPTLMVQVLPPVVAGIFLAAPMAAIM
                     SSIDSMLIQSSSTLIKDLYLAIKPNAINNEKKIKLFSTITTLTFTVLLVFAALTPPEM
                     LIWLNLLSLGGLEATFLWVIVLGLYWEKANATGAIYSMLAGLSCYVLMTTFKIAIFSF
                     HAIVPSLLIGLIAFLIGNRFAPKV"
     gene            complement(4778..5968)
                     /gene="nhaA"
                     /locus_tag="PXE92_001985"
     CDS             complement(4778..5968)
                     /gene="nhaA"
                     /locus_tag="PXE92_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDL5761199.1"
                     /translation="MEKLKEFLKSEASGGVLLLVFAFAAIVCANTSLSDFYFEFLQTI
                     VSVQFGEFALNKPLLLWVNDGLMAVFFTLVGLEVKKELFEGSLSSYKKAIFPAIAAVG
                     GMIVPAIIYWAINQNHPEYHNGWAIPMATDIAFAVGIVALLGTRVPLALKAFLLALAI
                     IDDLGAIVVIAIFYSQEISVQALTIAAIAIIGLVLLNRFKVTSLCAYLVVGLVLWTSV
                     LKSGVHATLAGVIIGFCVPLKGKHGERPAEELEHILAPWCAYMILPIFAFANAGVYLL
                     EMGMEQLSSPLPLGIALGLIIGKTLGVFGFSYLAVLFRLASLPQGVNFKQIFAIAVLC
                     GIGFTMSMFLASLAFDVSEAGESITALARLGILLGSAVSAILGYTLLRMATKQNNPEN
                     NATY"
     gene            6136..6564
                     /locus_tag="PXE92_001986"
     CDS             6136..6564
                     /locus_tag="PXE92_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5761200.1"
                     /translation="MTHDWLYWALASALFAALTAIFAKVGLQGVDSDFATFIRTVVII
                     IALIAFLTYSGKWQPLDSLSSKNWLFLILSGLATGLSWSAYFKALQMGNASQVAPIDK
                     FSLVLVTLFAVIFLGERPSGQDWLGIGLVAGGVLLLAFKR"
     gene            6570..7292
                     /locus_tag="PXE92_001987"
     CDS             6570..7292
                     /locus_tag="PXE92_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HDL5761201.1"
                     /translation="MQNFANIEIAFIHRKAPLPSDFSYPEMPGGLTEKQVQKWQSRRV
                     AFFLLTELFKKHHLDLDLLADMQRSPSGRTFVDSEQIDFNISHSGEWIAVIFSYSFAK
                     LAVGIDIEHPQKIRRYHDLICHYGNAEEQNVLLANHSPILSNLAERFYLSWCLREAIL
                     KSQGVGIVKLSEVKHLPLEKQIFSAHCPKGKLHFVSELPFYLSYFYQQPQNMLLSEPL
                     LYHWQNGQFQPIKCQSLVYDVN"
     gene            7302..7721
                     /gene="psiE"
                     /locus_tag="PXE92_001988"
     CDS             7302..7721
                     /gene="psiE"
                     /locus_tag="PXE92_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HDL5761202.1"
                     /translation="MPKKSLEEHHSSFGKIASETFQWIMNIALLVTGALLSYSLFAEA
                     YSLYELSFSDSEKFQIVEKIVIFFLYFEFLALIVKYFKSNYHFPLRYFLYIGITAMVR
                     LIIVDHSNALHTLLFALSILVMIIALYIVHTDRLHKS"
     gene            7730..>8330
                     /locus_tag="PXE92_001989"
     CDS             7730..>8330
                     /locus_tag="PXE92_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDL5761203.1"
                     /translation="MKLTQYQHNDLQILNRETVYKGHFELQKITFRHKLFSGEMSGEV
                     VRELLIKGEAAALIAYDPTLDKVVLIEQVRIGAYDAGQKKSPWLLELVAGMVDKGNEE
                     PAEVAMREAKEEAGLEVTTVQHALSVWDSPGGQLERLHLFLGLIDSTQVKSGEVHGLL
                     EEENEDILVHVVSREQAYQWVEDGTIDNVIAVIGLQWLQL"
BASE COUNT         2395 a         1825 c         1700 g         2410 t
ORIGIN      
        1 caataaaaca tgtataaata tccagaattg attttgaatt tttcgatgca gatcacaaaa
       61 atagagagtt atacaaacaa gcggtaaaat tttgtaaaaa atttaccgct tgtaaaggtt
      121 acttatcagc taatttggca agtagttttt gatgaatacc gccaaaggct ccgttgctca
      181 tcactaagat gtgatcggtg ggtttggctt ctttgacgac tagatcgact aaatcatcaa
      241 tatttgccga ccaatacgcc ggttgcgata acacattggt aatctcgctc acactccacg
      301 caataatatc aggctggtaa acaaacactg cttcggcatc gtgtaggctt ggggctattt
      361 catctttatg gacacccatt ttcattgtat ttgaacgagg ctctaacact gccaaaatgc
      421 gttgattttt gccgacttta ccacgcagag catcaatagt cgcttctatc gcagttgggt
      481 ggtgagcgaa atcatcataa acggtaatgc cgtttacctc gcctttcact tccaaacggc
      541 ggttagcatt cacaaacttg cctaatgcct cgcaagcccc ttgcacttca acccctgcgt
      601 gatgagcggc ggcaatcgcc atcagagcat tatgcatatt gtgcttgccg ataatcgacc
      661 aatgcacctc gccttgttta acgcctaagt gaaacacctc aaactgtgag caatcggcat
      721 ttaacggttt agcaaaccat tcgttctgtt cgccaataaa ttgaagctgg ctgtaactgc
      781 ccatttttag tgtatcttgc acgttttgat cagcgattgc cgacaaaata cagccacttt
      841 gtggcatcgt gcgaacaagg tggtggaact ggcgttgaat cgcttttaaa tcatcaaaaa
      901 tatcggcgtg gtcaaattcc atattattga taatcagcgt tttcggggtg taatgcacaa
      961 atttagaacg cttatcaaag aacgcagaat cgtactcgtc cgcctcaatc acgaagaatg
     1021 gactgttacc ggcacgagcc gaaatgccga aattaccggc aacaccgcca attaaaaagc
     1081 cggtatcaat cccattttgg tctaaaatcc acgctaacat tcctgttgtg gtagttttgc
     1141 cgtgcgtgcc ggaaaccgcc agcacccatt tgtctttaag caaatgatcg tgcaaccatt
     1201 gcgggccgga ggtgtaattg agttggttgt ccaacacata ttccacgcac ggattaccac
     1261 ggctcatcgc attaccaatc accactaaat caggagccgg ttgcagttga gcaacatcgt
     1321 aattcgggat aatttcaata ccgtgagcag ctaaaaaggt actcatcggt gggtaaacat
     1381 tagtgtctga gccggtcact ttatagccaa gctcacgggc aatcattgcc acaccgccca
     1441 taaaggtgcc gcaaatgcct aaaatatgga tatgtttttt catcttttta tatttaaaat
     1501 gttagaatca tcccctctcc ccttgtggga gagggataga ttttttcttc gtgcagaaga
     1561 aaaaatcagg gagaggggta agcggtcatt tttaggctta atattgtaag ctccctctct
     1621 ctgaaaaata tttctgaacg aaatattttt cggtctcaat actcgctacg ctcgctcctg
     1681 tggagccgtt ggcaaagcca acgttcaaat gtaaacattt gtcccacaag gggagaggtg
     1741 cgctttagat gaggcgtacc atccctcgtt cacatcaatt aatcaatatt cttcaactct
     1801 tcttccgaaa gctgctcttg ttggctttgc tcaacattgc catctttcac tttaaattca
     1861 aggttttgga aataagcttc acggaaggta acataagggt cttgagcttg ctctaacaac
     1921 gcatcttgtt ctaataattt agaacgggta tctacccctt gtaccacaaa tttagcgata
     1981 gaccaaggtg acccaacata agtcagcacc gaataaccgg tttccaccgc actaccaata
     2041 ccttgacgag gtgtggttgc tccataagcc ggcatcataa tataggagcc ggaaggcacg
     2101 ccgtgagcgc ctaaactctc acctaaacca cgttgtccgt tatttaaacg taacccctca
     2161 tctaaactcg cccagtcaat taacccacct aaaccaaaca cagtgttgat ccagaagcgg
     2221 ttgaagtgaa ccatcgcttt tttaccttct ccttcaatta agcggtttac aaagctcacc
     2281 ggctcatcaa ggttattagc aacattaatt aagcctgttt taaccgggct tggtacatac
     2341 tctttccaac ctttagctac cggttttaac acataagggt ctaaatagtc gtaattgact
     2401 ttccacatcg cacggttaaa cccctcaagt gggtcgtctc gcacgccggt ttctgggtta
     2461 atgcttgatg aacaagcggt taaaaatgcc acactgagta gcataaacat cggtttgaac
     2521 gacttgagtt tcataaattg aaccttttgc agagaaattt gtccattgta gcgaagttga
     2581 taaaaaatac aaaacaaaaa gccgttttgc ctctagaaat ctagacgtct agattgagat
     2641 atagttcgct tttgattaca atacaggcaa catttaagga gcaaacaaat ggcagactgg
     2701 aacggcgaat atattagccc ttatgccgaa cacggcaaaa aaagtgaaca agtcaaaaaa
     2761 gtgacggtat ccattccaat taaagtattg gaaattttaa ctaatgagcg aacccgtcgc
     2821 caaatcaaaa atcttcgtca cgcaaccaac agcgaattat tgtgcgaggc ttttttgcac
     2881 gcctttaccg gtcagccttt gccgaatgat gaagacttga tgaaagacag ggcagatgaa
     2941 atccctgaag cggcaaaaca aaaaatgtgt gagctgggaa tagacccgga cgaatggcaa
     3001 tattagacac accttgcaac tgcgaggttc tttttatgtt ttaaggagac tttatgtatc
     3061 aacaattaac aacagaagca cgttgggctg tgttgcttac gctgatttat ctgctcggct
     3121 gggtaggttt tgcttacttt tcaccgcaag gcagaggcat tttcggcttt ccgatttggt
     3181 ttgaactttc ttgcattttc ttacccgtac tatttagctt agttgccacc attgtcgtca
     3241 aaaaagtgta taaaaatatc gatcttgagg tgaataatga atagtgaaat gattttaccc
     3301 ctgattgctt atttaatttt tgtgtttggc gtagcgtttt atgcttaccg taaacgccaa
     3361 ggcggaagct ttatttcgga atactatatc ggtgggcgtt caatgtcggg ctttgtgtta
     3421 gcaatgacaa ccgccgccac ttatgtgggg gcaagttcct ttatcggtgg gccgggtgct
     3481 gcctataaat acggtttagg ctgggtgtta ctggcaatga ttcaagtgcc cgcagtgcta
     3541 ctctctcttg gagcattagg caaaaaattt gccttacttg cccgcaagca taatagtgtc
     3601 accattaacg atatgttatt agcccgttac caaaacaaat ttgtggtttg gattgcagga
     3661 ctagccttat tactttcgtt ttttgcgatg atgacggtgc aatttatcgg tgccggtcgc
     3721 ttacttgaaa ccacactcgg aatcccttac caaacagcgg taatgatttt tgccatcaca
     3781 gtcgggcttt atacctttat cggcggtttt agagcggtgg tgctaaccga tactattcaa
     3841 ggtttagtaa tgatagtcgg cacaagcatt ttactcgctg gtgtgattta tgccacaggc
     3901 ggagtggaaa atgcaatgca cacccttgaa gccattaacc cacaacttac caccccttac
     3961 ggcattgacg aacgcccgct tgatttcacc tttatgactt cattttgggt attggtttgc
     4021 tttggtttaa tcggcttacc gcatattgcg gtcagaagta tggcatgcaa aaacagccaa
     4081 gccttgcacc gagcaatgat tatcggcacg gtagtcattg caattctaat gtttggaatg
     4141 cacctttcag gcgtattagg cagagcggtt gtgcctgatc tcaaagtgcc ggatcaagtc
     4201 attccaacac taatggtaca agtgctacca ccggtggttg ccggtatttt ccttgccgcc
     4261 ccaatggcag cgattatgtc ttcgattgac tcaatgttga ttcagtcgtc ttcaacctta
     4321 attaaagatc tctatctggc aattaagccg aatgccatta ataacgagaa aaaaatcaaa
     4381 ttgttctcca ctattactac tcttactttt acggtattac tcgtgtttgc cgccctaacc
     4441 ccgcctgaga tgttaatttg gctgaaccta ctctctttag gtggtttaga agcgactttc
     4501 ctatgggtaa ttgtactagg gttgtattgg gaaaaggcaa atgccaccgg tgctatttac
     4561 tcaatgctgg caggcttaag ttgttatgta ttaatgacta cctttaagat tgctattttt
     4621 agcttccacg ccattgtgcc ttcactgcta attggtttga ttgctttctt aatcggcaac
     4681 cgatttgctc ctaaggtgta aaataaaata ggcatagtgg tatggaagtt cactatgcct
     4741 attttgcaaa atttccgctc aattcaaccg cttgtagtta ataagtggca ttattttctg
     4801 gattattctg cttagtcgcc attctaagta acgtataacc taaaatcgct gaaaccgcag
     4861 agccgagtaa aatacctaat cgagctagag cggtaatact ttccccagcc tcacttacat
     4921 caaaggcaag acttgctaag aacatcgaca ttgtaaaacc gataccgcat agcaccgcaa
     4981 tggcaaaaat ttgcttaaaa ttaacccctt gcggcaggct ggcaaggcgg aataatactg
     5041 ctaaataact aaaaccgaat acacctaagg ttttgccgat aattaagccg agcgcaatac
     5101 ctaacggcaa tggtgatgag agttgctcca ttcccatttc taataagtaa acgccggcat
     5161 tagcgaaggc gaagatcggt aaaatcatat aagcacacca aggggcaaga atatgttcta
     5221 gctcctctgc cggtcgttcc ccatgtttac ctttcagcgg tacgcagaag ccgatgatca
     5281 cgccggcaag ggtagcgtga acccctgatt ttaaaacgga agtccatagc actaagccta
     5341 ctaccaaata agcacagagt gaggtcactt taaagcggtt aagtagcact aagccgataa
     5401 tcgcaatcgc ggcaatagtt aaggcttgca cactgatttc ttgcgaatag aaaatggcga
     5461 ttaccacaat cgctcctaga tcatcaataa tcgctaatgc caacaaaaat gcctttaaag
     5521 ccaatggcac acgagtgcct aataacgcca caatgcccac cgcaaaggca atatcagttg
     5581 ccattggaat tgcccaacca ttatgatatt cagggtggtt ttgattaatc gcccaataaa
     5641 taatcgctgg aacaatcata ccacctactg ctgctatcgc aggaaaaata gctttcttat
     5701 aacttgaaag cgaaccttca aacaactctt tttttacttc cagccccacc aacgtaaaaa
     5761 acactgccat taagccatcg ttaacccaga gtaatagcgg tttattcaag gcaaattcac
     5821 caaactgtac actaacaatc gtttgtaaaa actcaaaata gaaatcactt aaggaggtgt
     5881 tggcgcacac aattgctgca aaagcaaaaa ccagaagcaa tacgcctcct gaggcttcag
     5941 attttaaaaa ttcttttaat ttttccactt aactttctcc tattaatatt tgtttattgt
     6001 attttcattt ctatacattc catcttttac caaaaatttt gcgaagatca aatagaaaat
     6061 ttgataaact agaactaact cgcattttat tgctccatat gattagaaat taacctaaaa
     6121 tattaaaatt ttgttatgac acacgattgg ctctattggg cattagcctc tgcacttttt
     6181 gcagcattaa ccgccatttt tgccaaagtt ggcttacaag gcgtagattc tgatttcgcc
     6241 acttttattc gcacggtagt tattattatt gcacttattg cctttctcac ttacagcgga
     6301 aaatggcagc cgttagatag cttgagcagc aaaaactggc tgtttttaat cttatccggc
     6361 ttggcaacag gattgtcttg gtcggcgtat ttcaaagcat tgcaaatggg taatgcttcc
     6421 caagtcgctc caatcgataa attcagcttg gtgttagtta ccctttttgc agtaattttc
     6481 ttaggcgaac gcccaagcgg acaagattgg cttggcattg gcttagttgc tggtggcgta
     6541 ctgttacttg ccttcaagcg gtgattttta tgcaaaattt tgcaaatatt gaaattgcgt
     6601 ttattcatcg gaaagcacct ctgccgagtg atttctccta ccctgaaatg cccggcggtt
     6661 taactgaaaa acaggtgcaa aaatggcaaa gccgccgagt cgcctttttt ctgctgacgg
     6721 aattgtttaa aaaacaccat ctggatttag atttattagc tgatatgcaa cgctccccaa
     6781 gcggtcgcac ttttgtcgat tctgagcaaa ttgactttaa catcagccat tcaggggaat
     6841 ggatagcggt cattttttcg tattcttttg caaaattagc ggtcggcatt gatattgaac
     6901 acccacaaaa aatcagacgt taccacgatt taatctgcca ttacggaaac gctgaagaac
     6961 aaaatgtttt attagccaac cactccccca ttctaagcaa cctcgccgaa cgcttttatt
     7021 tgagctggtg cttgcgagag gcgatattga aatcgcaagg ggtggggatt gtgaaactgt
     7081 ccgaagtaaa acatttaccg ttagaaaaac agatcttttc cgcccattgt ccgaaaggca
     7141 agctgcattt tgtgagcgaa ctgccgttct atttaagcta cttctatcaa caacctcaaa
     7201 atatgctatt atctgaacct ttgctatacc attggcaaaa cgggcagttt cagcctataa
     7261 agtgccaatc acttgtttat gatgttaatt aaggataacg aatgcctaaa aaatctttag
     7321 aagaacacca ttccagtttt ggcaaaattg cttccgaaac ctttcagtgg attatgaata
     7381 ttgccttgct agtaacagga gcattgcttt cttactcgct gtttgctgaa gcctattcac
     7441 tctatgaact ttcctttagc gacagtgaga aattccaaat tgtagaaaaa atagtaattt
     7501 tctttctcta ttttgagttt cttgcgttga ttgtgaaata tttcaaatcg aattatcact
     7561 ttccgttacg ctatttcctc tatatcggga ttactgccat ggtgcgtttg attattgtcg
     7621 atcattctaa tgcgttgcat acactattat tcgcactctc tattttggtg atgattatag
     7681 cattatatat tgtacacacc gatcgtttac ataaaagcta ggaactaata tgaagctaac
     7741 ccaatatcag cacaatgatt tacagattct aaaccgagaa accgtctata aagggcattt
     7801 tgagctacaa aaaatcactt tccgccataa gctgttttcc ggtgaaatga gcggtgaagt
     7861 ggtgcgtgaa ctcttaatta aaggcgaagc ggcggcttta attgcctatg atccaacctt
     7921 agataaggta gtattaattg agcaagtgcg gattggagct tacgatgcag gacagaaaaa
     7981 atccccttgg ttgctggaat tggttgccgg tatggtagat aaaggcaacg aagagccggc
     8041 agaagtggca atgcgtgaag ccaaagaaga agccggcttg gaagtcacaa cagtgcaaca
     8101 cgccttaagc gtatgggaca gtcccggtgg acaactggaa cgcttgcacc tgtttctcgg
     8161 cttgattgac agcacccaag tgaaatccgg cgaggtacac ggcttactgg aagaagaaaa
     8221 tgaagacatt ttggttcacg ttgtaagccg tgaacaggca tatcaatggg tagaagacgg
     8281 cacaattgac aatgtgattg cggtaattgg gctacaatgg ttgcaattaa
//
LOCUS       DANMBQ010000104         8281 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.104, whole genome shotgun sequence.
ACCESSION   DANMBQ010000104 DANMBQ010000000
VERSION     DANMBQ010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8281
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.104"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(398..2068)
                     /gene="glnS"
                     /locus_tag="PXE92_001990"
     CDS             complement(398..2068)
                     /gene="glnS"
                     /locus_tag="PXE92_001990"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HDL5761204.1"
                     /translation="MSEEILTAETGTRANFITHIIDEDLASGKHNNVYTRFPPEPNGY
                     LHIGHAKSICLNFGIAQDYNGLCNLRFDDTNPVKEDVEYVDSIKQDVEWLGFKWEGEP
                     RYASDYFDQLYGYAIELINKGLAYVDELSPDEMREYRGTLTEPGKNSPYRDRSVEENL
                     ALFEKMKNGEFAEGKACLRAKIDMASPFIVMRDPVLYRVKFAHHHQTGDKWCIYPMYD
                     FTHCISDAIERITHSLCTLEFQDNRRLYDWVLDNISIERPLPHQYEFSRLNLEGTLTS
                     KRKLLKLVTDGIVDGWNDPRMPTISGLRRRGYTPASLREFCRRIGVTKQDNVVEYSAL
                     EACIREDLNENAPRAMAVINPVRVVIENFGEKEILKAPNHPNRPELGERDLPFTREIY
                     IDEADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDASGRISTIFCTYDPDTLGK
                     NPADGRKVKGVIHWVSAEDNKPAEFRIYDRLFTVPNPGAEEDINAVLNPESLVVKHGF
                     VESSLAHAKPEQDYQFEREGYYCLDSKDGSADNLVFNLTVSLKESVAF"
     gene            complement(2229..2672)
                     /locus_tag="PXE92_001991"
     CDS             complement(2229..2672)
                     /locus_tag="PXE92_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL5761205.1"
                     /translation="MNLQQIQDRLALKDLVDTFSNLADEKKVAEQMPLFTQDAVVNTY
                     IGGKLVFEMHGVAEIEQVFTTFLTPFHSVYHLNGQHTVPFIDENNATAINYCAVKLVE
                     TKEGKEILHDHSVRYADTYVKQEGKWRIAKRIANFMISESREIRQ"
     gene            complement(2723..3298)
                     /locus_tag="PXE92_001992"
     CDS             complement(2723..3298)
                     /locus_tag="PXE92_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HDL5761206.1"
                     /translation="MKQILILGASGSLANVVIPELLKDNNVQLTLFARRPQSVAKFET
                     ERVKIVQGDVLDFHALTQAMQGVDAVYAGLAGDLKAMAGNVVNAMNEAQVKRLVWISS
                     MGIYGETGEDHGAILEPYRQSAAVIEASELDYTVVRPGWFTNGSEVQYQLTHKGEPFK
                     GHSVSRKSIADFVARILRENSEIRESVGIAA"
     gene            3405..4295
                     /locus_tag="PXE92_001993"
     CDS             3405..4295
                     /locus_tag="PXE92_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5761207.1"
                     /translation="MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEER
                     LQIKLFHRTTRSISTTEAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEH
                     VFRDVLADKFAEFVKRYPEVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRIS
                     PDVKMTAAASPNYLAQHGTPKTPFDLTEHHCLKHRLATLGGILAWEFRDPITKKIVKF
                     QPQGNLTANNGFLLQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLY
                     YPNRRQNSPLLKALIDVLRG"
     gene            complement(4362..4928)
                     /gene="efp"
                     /locus_tag="PXE92_001994"
     CDS             complement(4362..4928)
                     /gene="efp"
                     /locus_tag="PXE92_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDL5761208.1"
                     /translation="MASYSTNDFKKGLKFIQDGEPCVIVENEFVKPGKGQAFTRTKIR
                     KLISGKVLEINFKSGTSVEAADVVDSNYNYSYSDGDFWYFMHPETFEQISVDEKALGD
                     NVKWLVDNAECIVTLWNGSAIAVTPPNFVELEIVETDPGLKGDTAGTGGKPATLSTGA
                     VVNVPLFVQIGEVIRVDTRSGEYVSRVK"
     gene            5095..5664
                     /locus_tag="PXE92_001995"
     CDS             5095..5664
                     /locus_tag="PXE92_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761209.1"
                     /translation="MKKLITLSAILAVSVATVAEAKRGGGSFRSVSPSKAVATKPVAS
                     QKSTTNQQTQQKDATFANTPNSATAQPQVRQGSTMANVAMGAAAGYILGDMMSSNAHA
                     NQPSQPADANAQAVNSAQNVANGAVPAIAEFKSIGGQIDPFLVEKTDGYRRYCISGVQ
                     YLVAAQGVQTSPTVMVNPNGTPLQCNLIP"
     gene            5718..6710
                     /gene="epmB"
                     /locus_tag="PXE92_001996"
     CDS             5718..6710
                     /gene="epmB"
                     /locus_tag="PXE92_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HDL5761210.1"
                     /translation="MQPIQIKPLWLTELAQAFNNPIDLLQFLELNPNDFEGDIAARKL
                     FALRVPRMFAEKMEKGNPNDPLFLQAMSLQAEFIEAEGFVVDPLEEQQSPAPNILHKY
                     HNRLLFMLKNSCAINCRYCFRRHFPYEEVKSGKAVWQQGLTYIAEHPELEEVILSGGD
                     PLMAKDQDLDWILTQLEQISHIKTLRIHSRLPVVIPNRITTELCERLSKSRLNVVLVT
                     HINHANEIDAVFANKMAQLKKAGVVLLNQSVMLKGVNDNAQTLKRLSDKLFEYGILPY
                     YLHLFDKVAGASHFYIEDEQAGEIYRELQRITSGYLVPKLAREIAKEPNKILKG"
     gene            complement(6810..8213)
                     /gene="asnS"
                     /locus_tag="PXE92_001997"
     CDS             complement(6810..8213)
                     /gene="asnS"
                     /locus_tag="PXE92_001997"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HDL5761211.1"
                     /translation="MSKFPTVSEILSGKIAVGEEATVRGWVRTRRDSKAGLSFLSVYD
                     GSCFDPIQAIINNDLPNYNAEVLHLTAGCSVVVTGKVVESPAEGQAVELQASKVEVLG
                     WVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFHEQGFYW
                     VATPVITASDTEGAGEMFRVSTLDLENLPRGENGKVDFNQDFFGKESFLTVSGQLNAE
                     TYACALSKVYTFGPTFRAENSNTTRHLAEFWMMEPEVAFADLNDNAKLAEDMLKYVFK
                     AVLAERKDDMEFFVKHVDKEAISRLENFINSPFAQVDYTDAIEILLKSGKEFEFPVSW
                     GIDLSSEHERFLAEEHFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEII
                     GGSQREERLEVLDQRMNEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYVTGLQ
                     NIRDVIPFPRAPRNANF"
BASE COUNT         2370 a         1784 c         1718 g         2409 t
ORIGIN      
        1 attacgattt tatttctaat cagatcttat ctattcttcg agaagacaat gctatcataa
       61 aagagcatca cttttggttt ccaaagatta tagaaagctc aaataataca ctacctcata
      121 atttaaaatg aaacgtttca attggaaaaa gtggattttg tgactgagat cacaaattta
      181 aacattggtc tgtatttttg agagattttg tttgaaactg ccggcaaatt cgcttaacct
      241 taaggtaaca agaataagtg ttgtacctag caacctaaca cataaatttg ctttccgagt
      301 ggccccaaga attggggctt tttttatgct tgatgagtcg ttttgagagt aaaaaaatac
      361 cagcatattt gctggtattt gaatgaagag agttagatta gaacgctacg ctttctttta
      421 agctgacagt taagttaaat acaaggttgt ctgccgaacc atctttgctg tctaagcagt
      481 agtaaccttc acgctcgaat tggtagtctt gttccggttt ggcgtgagct aaacttgact
      541 caacaaaacc atgcttaacc actaatgatt caggatttag caccgcattg atgtcttctt
      601 ccgcccccgg gtttggtact gtaaataggc ggtcgtaaat gcggaactct gccggtttgt
      661 tatcttcagc agatacccaa tgaatcacgc cttttacttt gcgaccatca gccggatttt
      721 tgcccaatgt atccgggtcg tatgtgcaaa aaatagttga aattcgaccg cttgcatctt
      781 tttccacacg ctcagcttta atcacatagg cattgcgtaa acgaacttct ttgcctaaga
      841 ctaaacgttt atattgctta ttggcttctt cacggaagtc ggcttcatca atataaatct
      901 cacgggtgaa cggtaaatca cgctcgccaa gctctggacg atttgggtga ttaggggctt
      961 ttaatatttc cttttcaccg aagttttcaa tcaccactcg aaccgggtta atcaccgcca
     1021 tcgcgcgtgg tgcgttttca tttaagtctt cacgaatgca cgcttcaagg gcagagtatt
     1081 ccaccacgtt atcttgcttg gttaccccaa tacggcgaca aaattcacgt aaagacgctg
     1141 gggtataacc acggcggcgt aagccggaaa tggttggcat acgagggtca ttccaaccat
     1201 caacaatgcc gtctgtgact aattttaata atttacgctt agaggttaaa gtaccttcta
     1261 aatttaaacg tgaaaattcg tattggtgcg gtaacggtct ttcaatcgaa atattgtcca
     1321 gcacccaatc atataagcgg cggttatctt ggaactctag cgtacatagc gagtgagtga
     1381 ttcgctcaat cgcatcggaa atgcagtggg taaaatcgta catcgggtag atgcaccatt
     1441 tatcaccggt ttgatgatgg tgagcaaatt tcacacggta aagcaccgga tctcgcatca
     1501 caataaacgg ggacgccata tcaatttttg ctctcaagca ggctttccct tccgcaaact
     1561 ctccgttttt cattttttcg aataacgcta agttttcttc cacgctacga tcacggtaag
     1621 ggctgttttt gcccggctcg gttaaagtac cacggtattc acgcatttca tcaggcgata
     1681 attcatcaac ataggctaat cctttgttga ttaactcaat cgcatagcca taaagctggt
     1741 caaaatagtc tgaggcataa cgaggctcac cctcccattt aaaacctagc cactccacat
     1801 cttgcttaat tgaatctaca tattccacgt cttctttaac cgggttggta tcatcaaaac
     1861 gcaagttaca taaaccgtta taatcttgag cgataccaaa atttaaacag atagatttag
     1921 cgtgtccgat atgcaaataa ccgtttggtt caggtggaaa acgagtgtaa acattgttgt
     1981 gctttccgct tgctaaatct tcatcaataa tatgggtaat aaaattggct cgagtgccag
     2041 tttctgccgt taaaatttct tcgctcatag ttctctctaa atgtatcaat aaaaataacg
     2101 gattattcta cacttaattg aaacagactt aaagactaaa gcaaaattcc tcggtttcct
     2161 ccaaagaatt ttgctgtttt agtaagatgc aatggaattg caaattttta gctaaattta
     2221 accgcttgtt attgcctgat ttcacggctt tcgctgatca taaaattcgc aatccgtttg
     2281 gcaatccgcc atttaccctc ttgtttaaca taggtatcgg cataacgcac gctgtgatcg
     2341 tgcaagatct ctttgccctc tttggtttct accagtttca ccgcacaata gttgatcgct
     2401 gtggcgttat tttcatcaat aaaaggcacg gtatgctgac cgtttaaatg ataaacgctg
     2461 tgaaacgggg ttaaaaaggt ggtaaacacc tgttcgattt ctgccacgcc gtgcatttca
     2521 aacaccaatt ttccgccgat gtaggtgttt acgacggcat cttgcgtgaa aagcggcatc
     2581 tgctcggcaa cctttttttc atcggcaagg ttagagaatg tatctactaa atcttttagt
     2641 gctaaacgat cttggatttg ttgtaagttc attgtgtttt ccttctgatt tttgcaaatt
     2701 ttctttggtt tttcaccgct tgttaggctg caataccaac actttcacgg atttcgctgt
     2761 tttcacgcaa aatgcgagcc acaaaatcgg caatggattt gcgggaaacg ctgtgtcctt
     2821 tgaacggttc gcctttgtga gtcagctgat attgcacttc cgaaccgttg gtaaaccagc
     2881 ccgggcggac aacggtataa tccaactcgc tggcttcaat cacggctgcc gattggcggt
     2941 aaggctctaa aattgccccg tgatcttcgc cggtttcgcc ataaatcccc attgagctaa
     3001 tccaaaccaa gcgttttacc tgagcttcat tcattgcgtt caccacattt cccgccatcg
     3061 cttttaagtc gccggcaagt ccagcgtaaa cggcatcaac gccttgcatt gcttgggtta
     3121 atgcgtggaa atccaacaca tcgccttgca caattttgac gcgttcagtt tcaaatttcg
     3181 ctactgattg cggacgacgg gcaaaaaggg ttaattgcac attattgtct tttagcagtt
     3241 caggaatcac gacattcgct aggctaccgc ttgctcctaa aattaagatc tgtttcattg
     3301 ctgttctcca ttgaatgaag tcagtatagc ggtgtagatt gcatttgatt agtagggtaa
     3361 aatcgcttga agtaatgaga aaaattcatt aataaggtgg ttaaatgaaa gaaaacctca
     3421 acgatttaag agcttttttg ttggtagcac aaacgagcag ttttaccaaa gcagcagcac
     3481 agatgggcgt gtcgcagtcg gcgttgtcgc acagcattcg ggggattgaa gaacggttgc
     3541 aaatcaagct gtttcatcgc accactcgta gcatttcaac caccgaggca ggggagaggc
     3601 tgtatcaacg gctgttaccg ctgtttgatg aaatcgacca agaagtaaat gggctgagtg
     3661 agtttcgcaa tgcgttaaaa ggcgggctga gaattaacgg taatgaacac gttttccgtg
     3721 atgtgctggc agataaattc gctgagtttg tcaaacgtta ccctgaagta gcattggagc
     3781 tagtggcgga agatcgcttt gtagatattg tcgccgagcg ttttgatgcc ggtattcggc
     3841 ttggggcaga tgtggcgaaa gatatgattg cactacgcat ttcgcccgat gtgaaaatga
     3901 ccgcagctgc cagccccaac tatttggcac agcacggcac gccgaaaacg ccctttgatt
     3961 taaccgaaca tcattgtctc aaacatcgtc ttgcgacatt gggcggcatt ctggcgtggg
     4021 aatttcggga tcccatcacc aagaaaatcg ttaaatttca accgcagggc aatcttactg
     4081 ccaataacgg cttcttgctg caacactatg ccaaacaagg tttaggcatt ctttggagtc
     4141 cgcaagacag cattcaaacc gagctggata acggcagcct cgtgccgatt ttaaccgact
     4201 gggcaatgca gtatgagggc tatcatctct attaccccaa ccgtcgccaa aattcgcctt
     4261 tgctgaaagc gttaattgat gtgctgagag gataggtaaa aatgagcggt cgtttttagc
     4321 aaaaaattga ccaaaaaacg accacttgta gagaagctaa attatttcac acgagaaaca
     4381 tattcgcctg aacgggtatc cacacggata acttcaccga tttgaacgaa taaaggcacg
     4441 tttaccacag caccggtgct taatgttgcc ggtttaccgc ctgtacctgc agtatcgcct
     4501 tttaagcccg ggtcggtttc gacgatttct aactcaacga agtttggtgg tgtgactgca
     4561 attgctgaac cgttccataa agtcacgata cattctgcat tatcaactaa ccattttacg
     4621 ttgtcgccta acgctttttc atctaccgag atttgttcaa aggtttcagg gtgcataaag
     4681 taccagaaat caccatcgct gtaagagtag ttgtagttag aatctactac atctgctgct
     4741 tcaaccgaag tgcctgattt gaagttgatc tctaatactt tgccagagat taatttacgg
     4801 attttagtac gggtaaatgc ttgaccttta cccggtttta cgaattcgtt ttcaacaatt
     4861 acacaaggtt cgccatcttg aataaatttt aaaccttttt taaagtcgtt agtgctgtag
     4921 ctagccatta tttcctcaat tatttaaaaa ataacaataa attaacaaat tttgaaccca
     4981 accctattgg gtttgtcaaa aagagccata taataaccta aattcacaaa attagcgaaa
     5041 gatctcttgc gatttttgct ataatttttc aaactttatt gataaggaat gcgaatgaaa
     5101 aaactgatta ctctttctgc gattttagcc gtttctgttg caaccgtggc agaggcaaaa
     5161 cgtggcggtg ggagcttccg ttcagttagc ccgtcaaaag cggtagcaac taagccggta
     5221 gcttctcaaa aatcaaccac aaatcagcaa acgcaacaaa aagatgctac ttttgccaat
     5281 acgccaaaca gtgcaactgc ccagccacaa gtgcgtcaag gcagcacgat ggcaaatgta
     5341 gcgatggggg cagcagccgg ttatatttta ggtgatatga tgtcatcaaa tgcacatgca
     5401 aatcagccta gccagcctgc ggatgcaaat gcacaagcgg tcaattctgc acaaaatgtt
     5461 gcaaatggag cagttcctgc tattgcagaa tttaagagta ttggcggtca aatcgatccg
     5521 tttttagtag aaaaaaccga tggttatcgc cgttattgta tttcaggcgt gcaataccta
     5581 gtcgctgcac aaggtgtaca aacctcacca actgtaatgg ttaatccaaa tggcacgcca
     5641 ttacaatgta acttaattcc ataattattt ttatttgcgg gcaggcaaaa acctgcccct
     5701 tgtatctaca atattcaatg caaccaattc aaatcaaacc gctttggcta accgagctgg
     5761 ctcaagcctt taataaccct atcgacttat tacaatttct tgaactcaat ccaaatgatt
     5821 ttgagggcga tatagctgcc cgtaaattat ttgctcttcg agtgccaaga atgttcgccg
     5881 aaaaaatgga aaagggtaac ccaaacgatc cgcttttttt gcaagcaatg tctttacagg
     5941 cggaatttat tgaggcagaa gggtttgtgg tagatccatt ggaagagcaa caaagcccag
     6001 caccgaatat tttacataaa taccataacc gtttgttatt tatgctaaaa aacagttgtg
     6061 cgattaactg ccgttactgt tttcgccgtc atttccctta tgaggaagtg aaaagcggta
     6121 aagctgtgtg gcaacaggga ctaacttata ttgctgagca tcccgagctg gaggaagtga
     6181 ttctgtccgg tggtgatccg ctgatggcaa aagatcagga cttagattgg atattaacgc
     6241 aattagagca gatttcgcat atcaaaaccc tgcgtattca ttcacgcttg ccggtcgtta
     6301 ttcccaatcg aattacgaca gaattatgtg aacggttatc aaaatctcgc ttgaatgtcg
     6361 tgttggttac ccatattaat cacgccaatg aaattgatgc tgtttttgca aacaaaatgg
     6421 ctcaactgaa aaaagccggc gttgtattgc tgaatcaatc ggtgatgtta aaaggtgtaa
     6481 acgataatgc tcaaacctta aaaaggttaa gtgataaact ttttgaatat gggattttgc
     6541 cttactattt gcatttattt gataaagtgg caggggcgag ccatttctat attgaagatg
     6601 aacaggctgg tgagatttac cgagaattac agcgtatcac ttcaggctat cttgtgccaa
     6661 agctggcaag agaaatagcg aaagagccaa ataaaatttt gaaaggttag cttaaacaga
     6721 aatcaagaaa caaaaggcga aaatggtaaa attttcgcct tttttaaccg cttgttgcaa
     6781 gcggttaaat tctcttactt ttttgcaaat tagaagttcg cattgcgtgg agcacgtggg
     6841 aatgggatta catcacgaat gttttgtaac ccggttacat acacgattaa acgctcgaaa
     6901 cctaaaccga aacctgagtg tggcactgta ccgtatttac gcaaatcacg ataccaccag
     6961 taatcttcag ggtttaagcc catttcattc atacgctgat ctaacacttc taaacgttct
     7021 tcacgttgag aaccaccgat aatttcaccg attcccggag ctaaaacgtc cattgcggca
     7081 accgttttgc cgtcatcatt taaacgcata tagaaggctt taatgtcttt tggatagttt
     7141 ttcacgacca ccggcgattt aaagtgttct tcggctaaga aacgctcgtg ttcagaggaa
     7201 agatcgattc cccaagacac cgggaattca aattctttgc cggatttcaa taagatctca
     7261 atcgcatcgg tgtaatctac ttgagcaaat ggcgaattga taaagttttc taaacgacta
     7321 atcgcttctt tatcaacgtg tttaacgaaa aattccatat catctttacg ttctgcaagc
     7381 accgctttaa acacatattt cagcatatct tcggctaatt ttgcattgtc gtttaagtcg
     7441 gcaaaggcaa cttccggctc catcatccag aattctgcaa gatggcgagt tgtgtttgag
     7501 ttttctgcac ggaatgtcgg accgaaagta taaactttac ttaaggcaca cgcataggtt
     7561 tccgcattta actggccgga tacggttaag aacgattctt taccgaagaa atcttggtta
     7621 aaatccactt tgccgttttc gccacgaggt agattttcta aatccagcgt agaaacacgg
     7681 aacatttcac ctgcaccttc agtatctgag gcggtaatta caggtgttgc tacccaatag
     7741 aaaccttgct cgtggaagaa acggtggata gcttgagcta aacagtgacg aacacgagca
     7801 actgcaccga ttaagttcgt acgagggcgt aagtgagcga cttcacgcag atattcgata
     7861 gagtggcgtt tcgctgccat tgggtaggta tcaggatctt ccacccaacc aagcacttcc
     7921 actttacttg cttgtaattc aacggcttga ccttcagcag gggattccac aactttaccg
     7981 gtcaccacca cagagcaacc tgcggttaaa tgtaatactt cggcattata atttggtaga
     8041 tcgttattaa taatcgcttg aattgggtca aagcaagaac catcgtaaac gctcaagaaa
     8101 gataaaccgg cttttgaatc acggcgggta cgcacccaac cacgcactgt cgcttcttca
     8161 cctaccgcta tcttgccgga taggatttcc gaaactgttg gaaatttaga cattgaatac
     8221 ctcaaattct ttgttgtgag ttttaatata agaaacgttc cgtattctac aagaaaatag
     8281 g
//
LOCUS       DANMBQ010000105         8280 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.105, whole genome shotgun sequence.
ACCESSION   DANMBQ010000105 DANMBQ010000000
VERSION     DANMBQ010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8280
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.105"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            22..1008
                     /gene="pheS"
                     /locus_tag="PXE92_001998"
     CDS             22..1008
                     /gene="pheS"
                     /locus_tag="PXE92_001998"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDL5761212.1"
                     /translation="MQHLKDLTNKAREALDKIDQNLEALEEFRVEYFGKKGHFTTLMQ
                     ELRNIAAEERPAIGAKINEAKQVVLDVLNAKKEEWEQAVLNAKLANESIDVSLPGRKT
                     ELGGLHPVSITIERVVKFFSELGFTVANGPEIETDYYNFDALNIPDHHPARADHDTFW
                     FDANRLLRTQTSGVQIRTMENVKPPIRIVAPGRVYRNDYDQTHTPMFHQIELLYVDKE
                     ANFTELKGLIHDFLKAFFEEDLQVRFRPSFFPFTEPSAEVDVMRQNGKWLEVLGCGMV
                     HPNVLRNVGIDPEEYSGFAVGMGVERLTMLRYNVTDLRSFFENDLRFLKQFK"
     gene            1056..3443
                     /gene="pheT"
                     /locus_tag="PXE92_001999"
     CDS             1056..3443
                     /gene="pheT"
                     /locus_tag="PXE92_001999"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDL5761213.1"
                     /translation="MKFNESWLREWVNPAISTEQLCDQITMLGLEVDDVEPVAGAFSG
                     VVVGEVVECAQHPDADKLRVTKVNVGGERLLDIVCGAPNCRQGLKVACAVEGAVLPGD
                     FKIKKTKLRGQPSEGMLCSYSELGIKEDHSGIIELPADAPIGQDFREYLNLNDVAIEI
                     SLTPNRADCLSIAGIAREVGVINRVDVKAPTITDVKATISDKVSVELQAPEACPRYLA
                     RVVKNVNVKATSPLWLQEKLRRCGIRSIDPIVDITNLSLLELGQPMHAFDAAKIEGGI
                     QVRMAKEGEELVLLDGTNAKLQSNTLVIADSKGALAMAGIFGGEASGVSENTKDVVLE
                     SAFFAPLAITGRARQYGLHTDASHRFERGVDPELTRQAMERATALLLEICGGEAGEIV
                     EAVSQENLPKRNTVTLRRSKLDSVIGHHIDDATVTDILTRLGLNVTFADNSWTAIAPS
                     WRFDIEIEEDLIEEIARIYGYNSIPNNSPLAHLTMKGTPEKLLEANRIRMALVDSDYQ
                     EVITYSFVDPKKQSLLHPQQEALILPNPISSEMSAMRVSLLTGLLDTIVYNQSRQQNR
                     VRIFEAGLRFIPDSNAESGVRQEFVFGAAIVGDKRPVHWENKSEAADFFDLKGDIERI
                     LSLTSIRHDLQFVAKQFPALHPGQSAAIMLDGKEIGFIGTVHPSIVQKFGIKGKPIVC
                     EILASAIAERPVTQAGEISKFPANNRDIAVVVDESVPAGEVLEACRKAGGNKLVAVNL
                     FDVYRGSNLESGKKSLAISLTVQDNEKTLEENEINAVIQAVLAELATRFNAVLRD"
     gene            3501..3797
                     /locus_tag="PXE92_002000"
     CDS             3501..3797
                     /locus_tag="PXE92_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HDL5761214.1"
                     /translation="MALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEV
                     KLSGFGNFSLREKKARPGRNPKTGENVAVSARRVVVFKAGQKLRERVEQASSQS"
     gene            3836..4357
                     /locus_tag="PXE92_002001"
     CDS             3836..4357
                     /locus_tag="PXE92_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5761215.1"
                     /translation="MKLTKRWLSLGCLLAITAMLVACSSSDTTSKSQVKSKVYRSIYQ
                     SDLSDPIMAISRLSEHQHEWKGTRYRLGGNSKAGIDCSGFMQVTFKDLFGIDLPRTTT
                     EQAKAGERISKDELRTGDLVFFKTGRGPNGKHVGVYVKNGQFLHASTKGGVIYSDLDS
                     PYWSKAFWQARRL"
     gene            4373..5416
                     /gene="degS"
                     /locus_tag="PXE92_002002"
     CDS             4373..5416
                     /gene="degS"
                     /locus_tag="PXE92_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HDL5761216.1"
                     /translation="MLKKIGQAVIFGLFCAILILFVAPIIQSKGSSFSLSAFTQKEIV
                     SYNAAVKIASPAVVNVYSRNFSSENETFEVKNLGSGVIMSSDGYILTNRHVIEDADQI
                     VIALQNGAISTNVKLVGDDSLTDLAVLKIEGENLPTIPQNPERKLQIGDVVLAIGNPL
                     NLGQSITQGIVSAIGRKTLTESGRQNFIQTDVSINQGNSGGALINTAGELIGINTLRF
                     GKNTNELSEGLNFAIPINLANQIMSKIIKDGRVIRGYFGVSTDLLDTAKMQGYEKGVI
                     IVNVDKNGPAAKAGIQAGDLVLKVGDIEAFSPSQMMEELAEMKPYTTVKVLVQRDEQL
                     LNFDVTITELQTQ"
     gene            5425..6099
                     /gene="cmk"
                     /locus_tag="PXE92_002003"
     CDS             5425..6099
                     /gene="cmk"
                     /locus_tag="PXE92_002003"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HDL5761217.1"
                     /translation="MKKIVITVDGPSGAGKGTLCHALAEKLGFDFLDSGALYRITALS
                     AIKKEVPLDDEEKLAEVGRNLDIQFLPENGEIQVILEGENVGDLIRTAEAGQNASKVA
                     AFPLVREALLERQRAFSSEKGLIADGRDMGTVVFPDAQIKLFLDASAEERTKRRVKQL
                     QEKGFNANFDEILAEIKERDFRDRNRSVAPLVPAKDALLLDSTHLSIEDVINQALNHI
                     AQYIKF"
     gene            6191..7858
                     /gene="rpsA"
                     /locus_tag="PXE92_002004"
     CDS             6191..7858
                     /gene="rpsA"
                     /locus_tag="PXE92_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDL5761218.1"
                     /translation="MSELSFAQLLEESFAATPRLGDVVKGTVVAIQKGLVIVDTGFKS
                     ESAIDASEFTNAQGELEVQVGDEVDVVLKAVEDGFGATVVSRGDAKRNEAWIALEKAF
                     EEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRDSLNLEGKEYEFKVIKLD
                     QKRNNVVVSRRAVIETESNQDRDAVLANLVEGSEVKGTVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTRVSLGLKQLGQDPWAVIAENHPV
                     NSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLE
                     VDEERRRISLGLKQCKANPWEQFAATHSKNDKVSGKIKSITDFGIFIGLEGGIDGLVH
                     LSDISWNVSGEEAVRNYKKGDEVEAVVLQVDAVKERISLGIKQLESDPFTNFVDGTKK
                     GAILTGKVVEVDAKGVKVELEGGVEAFIRANEATAERVEDITSVISVGDSIEAKYTGV
                     DRKSRVVNLSVRAKNEAEESAAIAQVNKEEVVVPNAFAEAFKAAKGE"
     gene            7987..8268
                     /locus_tag="PXE92_002005"
     CDS             7987..8268
                     /locus_tag="PXE92_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HDL5761219.1"
                     /translation="MTKSELIESLASKNPSLPIKMVEHCVKELLEQLTATLEEGERIE
                     VRGFGSFSLHYRQPRLGRNPKTGESVLLGAKYVPHFKAGKDLKERVDLL"
BASE COUNT         2607 a         1336 c         1919 g         2418 t
ORIGIN      
        1 attgagttta gaggataggt aatgcaacac ctaaaagatt taactaataa agcacgtgaa
       61 gctttagata agattgatca aaatttagag gctttagaag agtttagagt cgaatatttt
      121 ggtaaaaaag ggcattttac aacgttaatg caagaattac gcaatattgc agcggaagaa
      181 agaccggcaa tcggagcaaa aattaatgaa gcaaagcaag ttgtgcttga tgtgttaaat
      241 gccaaaaaag aagaatggga acaagctgta ttaaatgcaa aattagctaa tgagagcatt
      301 gatgtttcac tgccggggcg taaaactgaa ttaggtggtt tgcaccctgt ttctatcact
      361 attgagcgtg tggtgaaatt tttctctgaa ttaggtttta ccgtagcaaa cggacctgaa
      421 attgaaaccg attactataa cttcgatgcg ttaaacattc cggatcatca tccggctcga
      481 gcggatcacg atacgttttg gtttgatgcc aatcgtttat taagaaccca aacctcgggt
      541 gtgcaaatcc gtacaatgga aaatgtaaaa ccgcctatcc gtattgtggc accggggcgt
      601 gtatatcgta atgactacga ccaaacccac acaccgatgt ttcaccaaat cgaattgtta
      661 tatgtggata aagaagcaaa ctttaccgag ttaaaaggct taattcacga ttttctcaaa
      721 gcattctttg aagaagattt acaagtgcgt ttccgcccgt cattcttccc attcactgag
      781 ccttctgcag aagtagatgt aatgcgtcaa aacggcaaat ggttagaagt gttaggttgc
      841 ggtatggtac acccgaatgt gttacgcaat gtagggattg accctgaaga atatagcggt
      901 tttgctgtgg gaatgggcgt cgagcgttta acgatgttac gctacaatgt cacggattta
      961 cgttcattct ttgaaaatga cttacgtttc ttaaaacaat ttaagtaata caagcggtta
     1021 aaaatttaga aaattttaca aataggatag aaataatgaa attcaatgaa tcttggttgc
     1081 gtgaatgggt aaacccagca attagcacag aacagttatg cgaccaaatt acaatgttag
     1141 ggttagaagt tgacgatgta gagccggtag ctggtgcgtt ttcgggtgta gttgtgggtg
     1201 aagtggtgga atgcgcccag cacccggatg ctgacaaatt gcgtgtcact aaagtgaatg
     1261 ttggtggcga acgtttatta gatattgttt gtggtgcacc aaactgccgt caaggtttaa
     1321 aagtggcttg cgctgttgaa ggtgcagtgc taccgggcga tttcaaaatt aagaaaacca
     1381 aattgcgtgg tcagccttca gaggggatgt tatgttctta ctcagaactt gggattaaag
     1441 aagatcatag cggtattatt gaattacctg ctgatgcacc tattggtcaa gatttccgtg
     1501 aatatttaaa tttaaatgat gtggcgattg aaatcagcct tacgccaaac cgtgccgact
     1561 gcttaagcat tgccggcatt gctcgtgaag tgggggtgat taaccgtgtc gatgtgaaag
     1621 ctccaactat tacagatgta aaagccacga tttcagataa agtttcagtg gaattacaag
     1681 caccggaggc ttgccctcgc tatttagccc gtgtggtgaa aaatgtgaat gtcaaagcga
     1741 catcgccact ttggttacaa gaaaaattac gccgttgtgg gattcgctca atcgatccaa
     1801 tcgttgatat tactaacttg agccttttag aattagggca gccaatgcac gcctttgatg
     1861 cagcgaaaat tgaaggtggc attcaagtgc gtatggcaaa agaaggcgaa gaattggtat
     1921 tgctagatgg cacaaacgct aaattacaat cgaatacctt agtgattgct gatagcaaag
     1981 gggcattggc tatggcaggt attttcggtg gcgaagccag cggggtgagc gagaatacga
     2041 aagatgtggt gttagagtct gcattttttg ctccattagc gattaccggt cgcgctcgtc
     2101 aatatgggtt acataccgac gcatcacacc gttttgagcg tggggttgat ccagaattaa
     2161 ctcgtcaagc aatggagcgt gcaacggcat tattactgga aatttgcggc ggtgaagcag
     2221 gtgaaattgt ggaagccgtg agccaagaaa acctaccaaa acgcaatact gtcacgctta
     2281 gacgcagtaa attagattcg gtgattggtc atcatattga cgatgcaacg gtaaccgata
     2341 ttttaacccg cttaggcttg aacgtaacat ttgcggataa tagttggacg gcaattgctc
     2401 caagttggcg ttttgatatt gaaattgaag aagatttaat tgaagaaatc gcgcgaattt
     2461 atggctacaa cagtatccca aataattcgc cacttgctca tttaacgatg aaaggtacgc
     2521 cggaaaaatt actggaagca aaccgtattc gtatggcatt ggtagatagt gattaccaag
     2581 aagtgattac ttatagcttt gttgatccga aaaaacaatc attattgcac ccacagcaag
     2641 aagccttgat tttaccaaac ccgatttcaa gtgaaatgtc ggcaatgcgt gtttctcttt
     2701 taaccggttt gttggacact atcgtgtata accaaagccg tcagcaaaac cgtgtgcgta
     2761 tttttgaagc aggtctacgt tttattccgg atagcaatgc ggaatcaggc gtgcgtcaag
     2821 aatttgtttt tggtgcggcg attgtaggcg ataaacgtcc ggtacattgg gaaaacaaat
     2881 cagaagcagc cgatttcttt gatttaaaag gcgatattga gcgtattctt tctttaacct
     2941 ctatccgcca cgatctgcaa tttgtcgcaa aacagttccc agcattacac ccggggcaat
     3001 cggctgcgat tatgcttgat ggcaaagaaa ttggttttat cggaactgtt cacccgtcaa
     3061 ttgtgcaaaa gtttggcatt aaaggcaaac cgattgtatg tgaaattcta gcatcagcta
     3121 ttgcagagcg tccggttaca caagcgggcg aaatttctaa atttcctgca aataaccgtg
     3181 atattgcggt agtggttgat gaatctgttc ctgcaggtga ggtgttagag gcttgtcgta
     3241 aagctggtgg taataaatta gtggcagtaa atttatttga cgtttaccgt ggttcgaatt
     3301 tagaaagtgg taagaagagt ttagccatta gcttaacggt tcaagataat gaaaaaacat
     3361 tagaagaaaa tgaaatcaat gcggtaattc aagcggtatt agctgaatta gcaacacgtt
     3421 tcaatgcggt acttcgtgat taatcagtaa aatatggctg atttatttta tcagccataa
     3481 caataaacta aggataaatg atggcgctta ccaagattga aattgcagaa aacctgattg
     3541 aaaaatttgg gttagaaaag cgtgtagcga agcaatttgt tgaattgttc tttgaagaga
     3601 tccgatcctc cctcgaaaat ggtgaagaag tgaaattatc tggttttggt aatttttcac
     3661 tgagagaaaa aaaagctcgt ccaggaagaa atcctaaaac gggggaaaat gtggctgttt
     3721 cagcccgtcg agtagtagtt tttaaagctg ggcaaaaatt acgagaacgt gttgagcaag
     3781 ctagctccca atcatagggg cagttatatt agttagattt aatgtggagt aataaatgaa
     3841 attaaccaaa cggtggcttt ccttaggttg tttgttagct attacagcga tgttagtggc
     3901 ttgttcaagt tcagatacaa cctctaagtc tcaagtaaaa agtaaagttt atcgttcaat
     3961 ataccaatca gacctttctg atcctattat ggcaattagt cgattaagtg aacatcaaca
     4021 cgaatggaaa ggcactcgct atcgtttagg tggcaatagc aaggctggca tcgactgttc
     4081 tggttttatg caagtcactt ttaaagatct ttttgggata gatttgccga gaaccaccac
     4141 agagcaggct aaggctggtg agcgtatatc caaagacgaa ttgcgtacag gtgatttagt
     4201 ttttttcaag acagggcgtg gtccaaatgg gaaacacgtt ggtgtttatg taaaaaatgg
     4261 gcaatttctt cacgcctcaa caaagggagg ggtgatttat tctgatttgg attcgccata
     4321 ttggtctaag gctttctggc aggctcgtcg tttataattt agggtaacat acatgctgaa
     4381 aaaaatcgga caagcggtca tatttggact tttttgtgca attttaattt tgtttgtagc
     4441 tccaattatt cagagtaaag ggagttcgtt ttcattatca gcattcactc aaaaagagat
     4501 tgtaagctac aatgcagcgg ttaaaatagc ctcccccgca gtcgttaacg tatatagccg
     4561 aaattttagt tctgaaaatg aaacatttga agttaagaat ttaggttcgg gtgtgattat
     4621 gagtagcgat ggctatattt taactaacag gcatgtgatt gaagatgcgg atcaaatcgt
     4681 gattgctttg caaaacggtg ctatttcgac taatgtaaaa ttagtcggcg atgattcttt
     4741 aactgattta gctgttttaa aaattgaggg tgagaattta cctactattc cacaaaatcc
     4801 ggagcgcaaa ctacaaattg gcgatgtggt gttggcaatt ggtaatcctt tgaatttagg
     4861 acagagcatt acgcaaggga tagtcagtgc tattgggcga aaaaccttaa cagaaagtgg
     4921 tagacaaaat tttattcaga cagatgtttc cattaatcaa gggaactcag gtggtgcttt
     4981 aattaatact gctggtgagc taataggtat taacactttg cgttttggga aaaatacgaa
     5041 tgaattgtca gagggcctaa attttgcgat tcccattaat ctggcgaatc aaattatgag
     5101 taagatcatt aaagatggcc gagttattcg tggctatttt ggggtaagta cagatttgct
     5161 tgacaccgca aaaatgcaag gttatgaaaa aggggtgatc attgttaatg tagataaaaa
     5221 tgggccagcc gcaaaagcgg ggattcaagc aggtgactta gtgcttaaag tcggagatat
     5281 tgaggcattc tctccttctc aaatgatgga agagcttgct gaaatgaaac cttatactac
     5341 agtaaaagta ttggttcaac gtgatgaaca attacttaac tttgatgtaa ctattactga
     5401 gttacagact caatagggta gaaaatgaaa aaaatagtga ttacagttga tgggccgagt
     5461 ggtgcaggta aaggaacgtt atgtcatgca ttggctgaaa aattagggtt tgatttttta
     5521 gattctggag ccttataccg gattactgca ttaagcgcaa ttaaaaaaga ggttcccctt
     5581 gatgatgagg aaaaactagc ggaagttggg cgtaatcttg atattcaatt tttgccagaa
     5641 aatggcgaga ttcaggtgat tttggaagga gaaaatgtag gcgacttaat ccgaacggca
     5701 gaagcaggtc aaaatgcctc taaagtcgct gctttccctt tggtacgtga agcactttta
     5761 gaacgccaaa gagcctttag tagcgaaaaa ggtctgattg cagatggacg agatatgggg
     5821 acagttgtgt ttcctgatgc acaaattaag ctgtttttag atgcaagtgc cgaagaacgc
     5881 acaaaaagac gtgtaaaaca gttgcaagaa aagggattta atgctaactt tgacgagatt
     5941 ttagccgaga taaaagaacg tgattttcgc gatagaaatc gatcagtcgc gccacttgtt
     6001 ccggctaaag atgcgttgct gttagattca acgcatttat caattgaaga tgtgattaac
     6061 caagcattaa atcatatcgc tcaatacatt aaattttagt ttgttgcttc acataggatt
     6121 tgtgtagctt ttattatcaa ccccgtttaa caggacgtta gatggatgtt tatttttaag
     6181 aagatttatt atgtcagaat tatcgtttgc tcaactactt gaagaatcat ttgcagctac
     6241 accacgttta ggtgatgttg ttaaaggtac tgttgttgct atccaaaaag gcttagttat
     6301 tgttgataca ggtttcaaat ctgaatctgc aatcgatgcc tcagaattta ctaacgcaca
     6361 aggtgaatta gaagttcaag tgggtgatga agtagatgtt gttcttaaag ctgtagaaga
     6421 cggttttggt gcaacagtag tttctcgtgg tgatgcaaaa cgtaacgaag cttggattgc
     6481 tttagagaaa gcatttgaag aacaagctac agttatcggt ttcgtaaatg gtaaagtaaa
     6541 aggcggtttc actgttgaat taaacggtgt tcgtgcattc ttacctggtt cattagttga
     6601 tactcgtccg gttcgtgatt ctttaaacct agaaggtaaa gagtacgaat tcaaagtaat
     6661 caaattagat caaaaacgta acaacgtagt agtatctcgt cgtgctgtta tcgaaacaga
     6721 aagcaaccaa gatcgtgatg cggtattagc aaacttagtt gaaggttctg aagttaaagg
     6781 tacagttaaa aacttaactg actacggtgc attcgtagat ttaggtggcg ttgacggttt
     6841 attacatatc acagatatgg cttggaaacg tgttaaacac ccaagtgaag tggttaatgt
     6901 aggcgatgaa gttactgtta aagtattaaa atttgacaaa gacaaaactc gtgtatcatt
     6961 aggcttaaaa caattaggtc aagatccttg ggctgtaatt gctgaaaacc acccggtaaa
     7021 cagcaaatta actggtaaag taactaactt aactgactac ggttgcttcg ttgagatttt
     7081 agacggtgtt gaaggtttag ttcacgtttc agaaatggat tggacaaaca aaaacattca
     7141 cccatctaaa gtggttaacg taggcgatgt agttgaagta atggtacttg aagttgatga
     7201 agaacgtcgt cgtatctcat taggtttaaa acaatgcaaa gcaaaccctt gggaacaatt
     7261 tgcggcaact cacagcaaaa atgataaagt atcaggtaaa atcaaatcaa ttactgactt
     7321 cggtattttc atcggtttag aaggtggtat tgacggttta gttcacttat ctgacatttc
     7381 ttggaatgtt tcaggtgaag aagcagttcg taactacaaa aaaggtgatg aagtagaagc
     7441 tgttgttcta caagttgatg cagtgaaaga gcgtatctct ttaggtatca aacaattaga
     7501 atctgatcct ttcacaaact ttgtagatgg tactaaaaaa ggtgcaatct taacaggtaa
     7561 agttgtagaa gttgatgcta aaggcgttaa agttgaattg gaaggtggcg ttgaagcatt
     7621 tattcgtgca aacgaagcaa ctgctgagcg tgtagaagac atcacttctg ttatttctgt
     7681 tggcgattca atcgaagcga aatacaccgg tgttgatcgt aaatctcgcg tagttaactt
     7741 atctgttcgt gcaaaaaacg aagctgaaga atcagcagca attgcacaag tgaacaaaga
     7801 ggaagttgtt gtacctaatg catttgctga agctttcaaa gcagctaaag gcgaataatt
     7861 agtatagact aatctaaaat gggtatgttt tgaacatacc catttaaact tagaaatgcc
     7921 attttgaata cttattttca taataaatga ttattcaaaa tagaattaat ttttggtaga
     7981 aataatatga ctaaatctga attaattgag agtttagcat ctaaaaatcc aagtttacca
     8041 attaaaatgg tggagcattg tgtaaaagag cttttagagc agttaacggc tactttagaa
     8101 gaaggtgaaa ggatagaagt aagaggattt ggtagttttt ctctacatta tcggcagccg
     8161 cgtttaggtc gcaatcccaa aacaggagaa agtgttcttt taggcgcgaa atatgtacca
     8221 cattttaaag ctggtaaaga tctaaaagag agagttgatc tgctttaagt cttattaatt
//
LOCUS       DANMBQ010000106         8227 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.106, whole genome shotgun sequence.
ACCESSION   DANMBQ010000106 DANMBQ010000000
VERSION     DANMBQ010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8227
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.106"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            166..597
                     /locus_tag="PXE92_002006"
     CDS             166..597
                     /locus_tag="PXE92_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL5761220.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLNDIRLVEPKKGNPFYACRIAAL
                     VGESDSPEYRYFDMNVVGKETETLIKRCQKAVSEEKKVLVSFVMADLWFDTFTYSTDS
                     KFHKKGDTGVSVKGRLIRIKMIKIDGEIAYQEKPKSDEQSE"
     gene            615..1607
                     /locus_tag="PXE92_002007"
     CDS             615..1607
                     /locus_tag="PXE92_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005588345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5761221.1"
                     /translation="MLCWALLLDVQDLRVTFKTPDGDVTAVNDLTFSLNAGETLGIVG
                     ESGSGKSQTAFALMGLLADNGRISGSAKFNGQEILNLPETQLNRLRAEQIAMIFQDPM
                     TSLNPYMKIGEQLMEVLMLHKGMDHKTAFEESVRMLDAVKMPESRKRMNMYPHEFSGG
                     MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKSEFNTAIIMITHDLG
                     VVAGICDNVLVMYVGRTMEYGTAEQIFYTPSHPYSIGLIGAVPRVDGQEEELITIPGN
                     PPNLLRLPSGCPFQPRCVHATKQCLKAPALTLLNDQRLRACFVPAEQLIRGNAS"
     gene            1604..2593
                     /gene="oppF"
                     /locus_tag="PXE92_002008"
     CDS             1604..2593
                     /gene="oppF"
                     /locus_tag="PXE92_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000994906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HDL5761222.1"
                     /translation="MNTEKKVILEVKDLSVHFNIKDTKSLFFAKHQTLKAVNHVSFQL
                     YEGETLGVVGESGCGKSTLARAIIGLVESSGGNILWLGKELTQQSAKEWKTIRSDIQM
                     IFQDPLASLNPRMTIGSIIAEPLKIYQPHLTAEEVKEKVRAMMMKVGLLPNLINRYPH
                     EFSGGQCQRIGIARALIVEPKLIICDEPVSALDVSIQAQVVNLLKSLQREMGLSLIFI
                     AHDLAVVKHISDRVLVMYLGNAVELGDYEQVYHDTKHPYTKALMSAVPIPDPQLERNK
                     QIQLLEGDLPSPINPPSGCVFRTRCPLADQHCIADKPLLKGRDNHVVACFKAE"
     gene            complement(2697..3455)
                     /locus_tag="PXE92_002009"
                     /pseudo
     CDS             complement(2697..3455)
                     /locus_tag="PXE92_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326384.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
     gene            complement(3585..4226)
                     /gene="bioD"
                     /locus_tag="PXE92_002010"
     CDS             complement(3585..4226)
                     /gene="bioD"
                     /locus_tag="PXE92_002010"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HDL5761223.1"
                     /translation="MAKVFFITGIDTDIGKTIATGWYAKKLMQQGASVITQKMIQTGC
                     RGIAEDLLIHRKIQGIELTEEDKQGITCPYVFDYPCSPHLAAKLEPRTIERKKIETCT
                     ALLCEKYDYVLLEGAGGLCVPYNEEETTLDYLCQHQYPVILVTSGKLGSINHTLLSLQ
                     VLNSKRVSVHAVIYNLYPETDQVISQETQHFLRRYLEKYSPNTLFEIMDLISV"
     gene            complement(4244..4999)
                     /gene="bioC"
                     /locus_tag="PXE92_002011"
     CDS             complement(4244..4999)
                     /gene="bioC"
                     /locus_tag="PXE92_002011"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDL5761224.1"
                     /translation="MDRIDKGRIKQRFSAAVSNYDQQARAQQQIHQRLLSLLSYIDRQ
                     AFQRALEIGCGTGGLTKQLMSQLQVEHWELNDLCDMREHLQSVLPQPFHFHCGDAEQL
                     PFPQQYDLIASASVVQWFEDKAGFIARCKVRLKKHGFLLFSTFTPENLTQIKHLTGVG
                     LTYPRLEDWQKWLVPEFEILALEHEEIVLHFDDPLAVLKHLKQTGVTATQQQRWTKGQ
                     LHAFCQQYQQHYRNAQHKVELTYTPMYVLARLT"
     gene            complement(5003..5650)
                     /locus_tag="PXE92_002012"
     CDS             complement(5003..5650)
                     /locus_tag="PXE92_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005758126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDL5761225.1"
                     /translation="MKTQHISQQGDNLIVYFAGWGTPPSVVEHLILPENYDLCLCYDY
                     RDLHCDVDFSAYQHIRVVAWSMGVWVAERVMQGYPLLSATAINGTGLPCDDQYGIPEA
                     IFAGTLSGLNEDNRTKFERRICGSKTLLRDYQHYSMRPTLQEIHAELTALYTFLQQDH
                     RTDLISWSKAIVGSKDKIFPAQNQRAYWQDRCAITEIAGEHLLFPHFTHWETCWL"
     gene            complement(5647..6810)
                     /gene="bioF"
                     /locus_tag="PXE92_002013"
     CDS             complement(5647..6810)
                     /gene="bioF"
                     /locus_tag="PXE92_002013"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HDL5761226.1"
                     /translation="MIRYYQQQLADLKAQNQFRQLPQLIHRGRFIQREDNTMLNMSSN
                     DYLGLANNEALRQAFFTQYQDQLPALTSSSSRLLTGSFPIYDELESLMAQAFGRETAL
                     LFNSGYHANIGILPALADKKTLIVADKLVHASMIDGIRLAQCEFVRFRHHDYVHLEQI
                     LQKNDRTFERIIVVTESVFSMDGDCADLTQLVALKQRYPQVMLYVDEAHAIGVLGEKG
                     LGLAEQQGCINQIDILVGTFGKALGSMGAYVICDQVIRDYLVNKMRPLIFSTALPPFN
                     VAWTHFVFQQLPHLQAERAHLAQLSQHLRQAIVDIFQVPMPSESCIVPYILGDNELTV
                     RTAQRLQQQGYYCLPIRPPTVPKGTSRIRFSLTADMQVAEVEQFIACLRELAE"
     gene            complement(6807..8108)
                     /locus_tag="PXE92_002014"
     CDS             complement(6807..8108)
                     /locus_tag="PXE92_002014"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDL5761227.1"
                     /translation="MNEQQLLECDRQHIWHPYAALNADFPLFAVERAEGVYIQLKNGQ
                     QLIDGMSSWWSAIHGYNHPRLNHAATQQLSQMSHVMFGGLTHQPAVELAQQLVNILPE
                     SLDKIFFADSGSVAVEVAMKMAVQYQHAKGETQRYKFATIRSGYHGDTWHAMSVCDPV
                     TGMHSLFAKGLPVQYFLPQPPVKFGQAWQPEAMQPLQDLLAQHGDEIAGLILEPVVQG
                     AGGMYFYSPEYLVQAKALCEPYGILLIFDEIATGFGRTGKLFACEHANVVPDVMCIGK
                     ALTGGYLTLSATITNQAVADVICSGEAKCFMHGPTFMANPLACAVAAESIKLLLASPW
                     QQRIQQIEQQLRQELRQAEALDCVAEMRVLGAIGVIEMKAPVNMASLPPRFVQNGVWV
                     RPFGKLVYLMPPYIISSDQLSQLIHGTIRTLQEEYAHKESL"
BASE COUNT         2353 a         1855 c         1704 g         2315 t
ORIGIN      
        1 agcattctga aagggaacgc cacttttgtg ggaatgccac ctaaaccctc taccatctca
       61 gtgaagcatc attgagattt cattttactt ccacctcgcg gggaacattt ttcccgtgtt
      121 gggcaaggat gtttctccgc ttttttacat ttggagaaac aaactatgac aactcaaact
      181 tctactcaaa aaaattactt caaccttcat acaacaggca ttggctatct aaacgatatt
      241 cgtttggtag agcctaaaaa aggaaatcct ttttatgcct gccgtatagc agctctggtt
      301 ggcgaatctg actctcctga gtacagatat tttgatatga atgtagtcgg taaagagact
      361 gaaacactta tcaaaagatg ccaaaaagca gttagtgaag agaaaaaagt gcttgtgtca
      421 tttgtaatgg ctgatttgtg gttcgataca tttacttact caacagatag taaattccac
      481 aaaaaaggcg ataccggtgt atctgtaaaa ggtcgcttaa tccgcatcaa aatgattaaa
      541 attgatgggg aaatagccta ccaagaaaag ccaaaatcag atgagcaatc tgagtaattt
      601 tacctaagcc cgacatttta tgttgggctt tattactcga tgtacaagat ttgcgcgtaa
      661 cttttaagac cccagatggc gatgttactg ccgtcaatga tctgactttt tctttaaatg
      721 ccggtgaaac cctcggcatt gtcggcgaat ctggctcagg aaaatcgcaa accgcttttg
      781 ctctaatggg gctattagca gataacgggc gaatttcagg atcagcaaaa tttaatggac
      841 aagaaattct caacttgcct gaaacacaac ttaaccgctt gcgtgctgaa caaattgcga
      901 tgatcttcca agatccaatg acctcgctga acccttatat gaaaatcggc gaacagctaa
      961 tggaagtact gatgttgcat aaaggcatgg atcataaaac tgcgtttgaa gaatcggtac
     1021 ggatgttaga tgcggtgaaa atgccggagt cacgtaaacg tatgaatatg tatccgcatg
     1081 aattttccgg cggtatgcgt cagcgtgtga tgattgcgat ggcattactt tgccgtccga
     1141 aactcctcat tgcggatgaa cccacaactg cgctcgatgt gacggtgcaa gctcaaatca
     1201 tgaccttatt aaacgaatta aaaagcgagt ttaataccgc cattatcatg attactcacg
     1261 atctcggtgt ggtcgcagga atttgcgata atgtgttggt gatgtatgta ggcagaacca
     1321 tggaatacgg caccgctgag caaattttct ataccccaag ccacccttat tctatcggct
     1381 taattggtgc agtgcctcgc gttgacggac aggaagaaga actcattact attccgggta
     1441 atccacctaa cttattacgc ttaccgagtg gctgtccttt ccaaccacgt tgcgttcatg
     1501 caactaaaca gtgcctcaaa gcaccggcgt taaccttgtt aaatgatcaa cgtttacgcg
     1561 cttgttttgt ccctgccgag caattaatcc gaggtaacgc atcatgaaca cagagaaaaa
     1621 agtgatccta gaagtgaagg atttaagcgt tcatttcaac atcaaagata cgaaatcttt
     1681 attctttgct aaacaccaaa ctttaaaggc cgtcaatcat gtctcttttc agttatacga
     1741 aggcgaaacc ttaggtgtgg tcggtgaatc gggctgtgga aaatcaactc tcgcacgcgc
     1801 gattattggc ttagtggaaa gctctggcgg taatatttta tggctaggta aggagttaac
     1861 tcaacaaagt gcgaaagaat ggaaaacgat ccgtagcgat attcaaatga ttttccaaga
     1921 tcctttagcc tccctgaatc cacggatgac cattggcagt atcattgccg aaccattaaa
     1981 aatttaccaa ccccatttaa ccgcggaaga agtgaaagaa aaagtacgcg cgatgatgat
     2041 gaaagtgggc ttattaccta acttaatcaa tcgctatcca catgaatttt cgggtggaca
     2101 atgtcagcgt atcgggattg cgcgcgcctt gattgtggaa ccaaaactca ttatttgcga
     2161 tgagccagtg tccgccttag atgtttcaat ccaagcacaa gtagtgaatt tattgaaatc
     2221 tttacaacgc gaaatggggc tatcattgat tttcattgca cacgaccttg ctgtggtgaa
     2281 acacatttcc gatcgtgttt tggtcatgta tcttggtaac gcggtggaat taggtgacta
     2341 tgaacaagtc tatcacgata ctaagcatcc ttataccaaa gctttgatgt ctgcggtacc
     2401 gattcctgat ccgcaattag aacgcaataa acaaattcaa ttgcttgaag gcgatctccc
     2461 ttccccgatt aatccgccgt cgggctgtgt gttccgcacc cgttgcccac tggcagatca
     2521 acactgtatt gcagacaaac cgctcctcaa aggacgagat aatcacgttg ttgcttgttt
     2581 taaagccgag taatacacac aaccgcacaa aaaagtgcgg ttgttttttt gcgaatattc
     2641 acagtcagac tttcgtgata ctttcgctct gagataagga ttacgataca gagaagttat
     2701 tcaacaatca cacgtgcatt gatcggttgc actggacgat tattgtgtcc tttcatcaag
     2761 gtcgcaaacg cctcaacttg agattggcta atgttgtcat agtgttttaa cactaaccaa
     2821 tttacacctt cagaacaagg tggtgtagtt aatgacccgc tgaaacgata gtaatcgcgt
     2881 tttttcggaa ttaatgttgc tgggtcaaaa gcggtactaa gcgtatattt ctcccctgct
     2941 ttttgcggga agttttgcca aattggggct aaccattggt tttaacttga taatacatag
     3001 agcacgccaa gcacagcaag attcccttca ttgtctgcgt gtacaaaatg tgcttccatc
     3061 gggaaggatt tacctcaaat taagttttca ctcggcacat ggaaatggaa ttgtttaagg
     3121 gtaaaagtct ttccattaag ctgcatgcga ttacttgcct ctttgaaatc cacttgaata
     3181 gtatgcccat tattgacaat ctccacattg gaaggtcgat aatccagctt aatcggcgct
     3241 aacttaccat caatcgtatg cttgatatct attggtgttt ggtttttacc ttcgccacaa
     3301 atacggaatt tgggtgaaag ttcagcccaa tgttctggcg attcgtgtcc ggtgtatccc
     3361 caatgcgtgt gcgtttcttc tttcttaagg gggcttgtac acgctgtcaa tgctaatgca
     3421 cctaacgtaa gcacaaaaag gtttgatttt ttcatagcct agctcctgat taaaagagat
     3481 gaattgatga gacaacctaa actcaatgat gccttaatcc gagacgcttt catcttaggc
     3541 aaaacaacac tccatttcaa gtataacttg ctcaagaata tatcttagac cgaaatcaaa
     3601 tccattattt caaataaggt attaggcgag tatttctcta aataacgacg taaaaaatgt
     3661 tgtgtttctt ggctaatgac ttgatctgtt tccggataca agttgtatat cacagcatgc
     3721 acacttactc ttttggagtt gagtacttgt aaactcaata aggtatgatt aatactacct
     3781 agcttgccag aggtaactaa aatcacgggg tattgatgct gacaaagata atcaagggtg
     3841 gtttcttcct cattataagg tacacacaag ccgcccgccc cttccaataa tacataatca
     3901 tatttttcac acaaaagtgc ggtgcaggtt tcaatttttt tacgttcgat cgtgcgcggt
     3961 tctaatttcg cggctaaatg cggtgagcaa ggataatcaa acacgtaagg acaagtgata
     4021 ccttgcttat cttcttctgt aagctcaata ccttgtattt ttcggtgtat gagtaaatct
     4081 tcggcaattc ctcggcagcc tgtttggatc atcttttgcg tgatgacact tgcgccttgt
     4141 tgcatcagtt tcttggcgta ccaacctgtg gcgatggttt tgccaatatc ggtgtcgatg
     4201 ccagtgataa aaaaaacctt tgccatactt tttccttcta agattaagtt aaacgcgcca
     4261 gcacatacat cggcgtgtaa gtgagttcta ctttgtgttg tgcgttacgg taatgttgtt
     4321 gatattgttg gcaaaaggcg tgcaattgcc cttttgtcca cctttgctgc tgtgtggcag
     4381 taacgcctgt ttgtttcaaa tgttttaaca ccgctaaggg atcatcaaag tgcaacacaa
     4441 tctcctcgtg ttcgagggct aaaatctcaa attcaggcac tagccacttt tgccagtcct
     4501 caagacgtgg ataagttaac cccacaccgg tgaggtgttt gatctgtgtt aaattctcgg
     4561 gcgtgaaagt actgaataac aaaaatccgt gcttttttaa gcgcacttta caacgcgcaa
     4621 taaaacccgc tttatcttca aaccattgca ccacggaagc actggcaatc aaatcatact
     4681 gctgcggaaa gggaagttgt tccgcatcgc cacaatggaa gtgaaaaggt tggggcaaca
     4741 ctgattgcag atgctctcgc atatcgcaaa ggtcattcag ctcccagtgt tcaacctgca
     4801 actgtgacat taattgcttc gttaatccac cagtaccaca tccaatctct aatgcacgtt
     4861 ggaatgcttg tctgtcgata tacgacaata aactaagcaa acgttggtga atctgctgtt
     4921 gtgctctcgc ttgctgatca tagttcgata cagcggcaga aaaacgctgt ttaatgcgtc
     4981 ctttatcaat acgatccatg tgctacaacc aacaagtttc ccaatgggtg aagtgaggaa
     5041 acaacaaatg ctcccctgcg atttctgtta ttgcacaacg atcctgccaa taagcccgct
     5101 gattttgtgc agggaaaatt ttatcttttg agccgacaat cgccttgctc cacgagatta
     5161 aatctgtacg gtgatcttgt tgtaaaaagg tataaagtgc ggtcagttca gcatgaattt
     5221 cctgtaatgt gggacgcatg gaatagtgct gataatctct taacagcgtt tttgaaccac
     5281 aaatacgacg ttcaaattta gtccgattat cttcatttaa accagataac gtgccagcaa
     5341 aaatggcttc gggaatacca tattggtcat cacaaggtaa gcccgtgcca ttgatcgccg
     5401 tagcagatag cagtggataa ccttgcatca cacgctccgc tacccacacg cccattgacc
     5461 atgccaccac gcgaatatgt tgataagcgg aaaaatcaac atcgcaatgc agatctcgat
     5521 aatcatagca aaggcataaa tcataatttt ccggcagaat caggtgctcg accacgctcg
     5581 gcggtgtgcc ccaccctgca aaatagacga tcagattgtc gccttgctgt gaaatatgtt
     5641 gtgttttcat tcagcaagct cccgtaaaca agcaataaat tgttccactt ccgccacttg
     5701 catatctgca gtcagtgaaa aacgaatacg agaggttcct tttgggactg tcggcgggcg
     5761 aatcggtaag caataatagc cttgttgttg caaacgttgc gccgttctta ctgtcagttc
     5821 gttatcgccc aaaatataag gtacgataca actttcactt ggcatcggga cttgaaaaat
     5881 gtcaacaatc gcttggcgta aatgttgact aagctgagca agatgtgcgc gttcggcttg
     5941 caaatgtggt aattgttgaa agacaaaatg cgtccatgcc acattaaacg gcggaagtgc
     6001 cgtggaaaaa atcaatgggc gcattttatt aaccaaataa tctcggatca cttgatcgca
     6061 aatcacataa gcccccatag agcccaacgc cttgccaaac gtaccgacta aaatatcaat
     6121 ttggttgata cagccttgtt gttctgctaa ccctagcccc ttctccccca atacgcctat
     6181 cgcatgggct tcatctacat ataacatcac ttgcggatag cgctgtttta atgcgaccaa
     6241 ctgggtgagg tctgcacagt caccatccat actaaacacg gattccgtga ccacgataat
     6301 ccgctcaaaa gtgcgatcat ttttttgcaa aatttgttca aggtggacgt aatcatgatg
     6361 acgaaaacgc acaaactcac attgtgccaa gcgaatgcca tcaatcatac tggcatgtac
     6421 cagtttatcc gccacaatca gcgttttttt gtccgctaaa gcaggcaaaa tcccaatatt
     6481 agcatgataa ccgctattaa atagcaaggc agtttctcgt ccaaatgcct gcgccattaa
     6541 gctttctagc tcatcataaa tcggaaaaga gcctgttaat aaacgggagg aagaagaagt
     6601 caatgcaggg agttgatctt ggtattgcgt gaaaaatgcc tgacgcaagg cttcgttatt
     6661 ggctaaacct aaataatcat tggaggacat attcagcatc gtattgtcct cacgttgaat
     6721 aaaacgccct cggtgaatta gttggggcag ttggcgaaat tgattctgcg cctttaaatc
     6781 agctaactgc tgctgataat acctgatcat agagattcct tatgtgcata ttcttcttga
     6841 agggtgcgaa ttgtgccatg aattaattga gacaattgat ccgatgagat gatatacggt
     6901 ggcatcaaat acactaattt gccaaatgga cgcacccaaa cgccattttg cacaaagcgt
     6961 ggtggtaaac ttgccatatt gacaggcgcc ttcatttcaa tcaccccaat cgctccaagt
     7021 actctcattt cagcgacaca atctaaggct tccgcttggc gcaattcttg acgtaattgc
     7081 tgttcaatct gttgaatacg ttgttgccaa gggcttgcca ataacaattt gatactttct
     7141 gctgctaccg cacacgccag tggatttgcc ataaacgtcg gaccgtgcat aaaacatttt
     7201 gcctcgccag aacaaatcac gtctgctacc gcttggttgg taatggtagc ggatagagtt
     7261 aaataccccc ccgttaaagc tttaccgata cacatcacat ccggcacgac attggcatgt
     7321 tcacaagcaa ataatttgcc tgtacgccca aatcctgtgg caatttcatc aaaaatcagc
     7381 aaaatgccgt acggttcgca taaggctttt gcttgcacca aatactcagg ggaataaaaa
     7441 tacataccac ccgccccttg cactaccggt tctaaaatta aacccgcaat ctcatcacca
     7501 tgttgtgcca ataaatcctg taacggttgc atcgcttcgg gttgccaagc ttgcccaaat
     7561 tttaccgggg gttgcggtaa aaaatattgc acgggtagcc ctttggcaaa caagctgtgc
     7621 atgccggtca cgggatcaca cacggacatc gcatgccaag tatcaccatg atagcccgaa
     7681 cgaatcgtag caaatttata gcgctgtgtt tcgcctttag catgttgata ttgcactgcc
     7741 attttcatcg ccacttccac ggcgaccgaa ccactatcgg caaagaaaat tttatccaaa
     7801 ctttccggca agatgttgac cagttgctgc gccagttcta ccgctggttg gtgcgttaat
     7861 ccaccaaaca tcacatgact catttgactc agttgttgcg tggcagcgtg gtttaaacgg
     7921 gggtgattat agccatgaat cgctgaccac cacgatgaca tgccatcaat caactgctga
     7981 ccgtttttta actggatata cacaccttcg gcacgttcta ctgcaaataa gggaaaatcc
     8041 gcatttaacg ccgcataagg gtgccaaata tgttgtcgat cacattctaa aagttgctgc
     8101 tcattcatcg tttcacctcg gttgtgaatc gccctttcaa ctggcgtaaa ttcacgcaaa
     8161 tacttacata aacggaataa cttgttataa tcgccaagca tttggctttt caagcccatt
     8221 attctaa
//
LOCUS       DANMBQ010000107         8216 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.107, whole genome shotgun sequence.
ACCESSION   DANMBQ010000107 DANMBQ010000000
VERSION     DANMBQ010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8216
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.107"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(55..693)
                     /locus_tag="PXE92_002015"
     CDS             complement(55..693)
                     /locus_tag="PXE92_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL5761228.1"
                     /translation="MELKHTIEQRKTIKAFNSTIKISRTELEEMVALSQLAPSKANLQ
                     PWRFVIIDVEILKAALSKNVAFNGPPCETASAIVVILADLQYEKLLGAIVDQSVETGC
                     LHKEFRERKFDFLLNLHNQATQAEIRDQVLIDTSLAAMQLMLIAKDKGYDTHAIGVFE
                     RPAVLKLLNIDAERYLPVMLLAIGKAANPALPSCRLPLEYTVSWNDGQGFKI"
     gene            complement(835..1629)
                     /locus_tag="PXE92_002016"
     CDS             complement(835..1629)
                     /locus_tag="PXE92_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5761229.1"
                     /translation="MALLEVNHLNKRFVERSSLFHKQDFYAVKEVSFTLNRKETLAII
                     GENGAGKSTLAKMVAGMVGPTSGELIFRGTPLSFGDYKYRAKHIRMMFQDPNDAFDPN
                     YNIGQILDAPLRLATDLNEEERNERIFNTLKLVGMYPEQALVPISEASSGQKQRIAFA
                     RALILEPEIIIADDTINSLDFSVKTQLINLMLSVQQRQGIAYIYVGQNLGLIKHIADK
                     IMVMQSGEVVEYGLTKEVLLNPQHQITKRLIESHFGKHLSSYAWAS"
     gene            complement(1730..2806)
                     /gene="fbaA"
                     /locus_tag="PXE92_002017"
     CDS             complement(1730..2806)
                     /gene="fbaA"
                     /locus_tag="PXE92_002017"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HDL5761230.1"
                     /translation="MSLLNIVKPGVVTGDDVQKVFAYAKEHNFAIPAVNCVGSDSVNA
                     VLETAARVKSPVIVQFSNGGAQFYAGKGIKPASGARADVLGAIAGAKHVHQLAEEYGV
                     PVILHTDHAAKNLLPWIDGLLEAGEKHFAETGRPLFSSHMIDLSEEPIEENMEICREY
                     LARMDKIGMTLEIEIGVTGGEEDGVDNSDVDESKLYTQPSEVLYVYDQLSPISPRFTI
                     AAAFGNVHGVYKPGNVKLKPSILGASQEYVSKERGLPAKSLDFVFHGGSGSSREEIRE
                     AISYGAIKMNIDTDTQWAAWDGILQFYKANEAYLQGQLGNPTGPDAPNKKYYDPRVWL
                     RKMEESMSKRLEQSFEDLNCVNVL"
     gene            complement(2903..4078)
                     /locus_tag="PXE92_002018"
     CDS             complement(2903..4078)
                     /locus_tag="PXE92_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDL5761231.1"
                     /translation="MSVIKMTDLDLAGKRLFIRADLNVPVKDGKVTSDARIVATIPTL
                     KLALQKGAKVMVTSHLGRPTEGVFEEENSLQPVVDYLNASDLGVPVRLVRDYLDGVEV
                     NENEIVVLENVRINKGEKKNDPELAKKYASLCDVFVMDAFGTAHRAEGSTYGVAEYAP
                     VACAGPLLATELDALGKALKEPQRPMLAIVGGSKVSTKLTVLDSLSKIADQLIVGGGI
                     ANTFIAAEGHAVGKSLYEEDLIPEAKRLAQVTNIPVPVDVRVGTEFSETAPATEKAVS
                     EVRADESIFDIGEKSSEQLAEIIRNSKTILWNGPVGVFEFPNFRKGTEVISNAIAEAT
                     ANGAFSIAGGGDTLAAIDLFGIKDKISYISTGGGAFLEFVEGKVLPAVEILEKRANG"
     gene            complement(4333..5691)
                     /locus_tag="PXE92_002019"
     CDS             complement(4333..5691)
                     /locus_tag="PXE92_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL5761232.1"
                     /translation="MANQQQERQSWSNRLAYIMTVAGATVGFGATWRFPYLVGEHGGG
                     AYVFLFCIAMIVIGIPMILVENVIGRRMRVNAIDAFAGFANGKKIASGWKILGYMGLL
                     GAFGILAYYMVLGGWVLNYIGSLLTGTLDLSQPVTVGTTQQFFQQSIFNSPMTIIAYT
                     ALFVLVNYFILVKGIVDGIERSVKYLMPILFIFLIVMVVRNITLPGAAEGIAFYLMPD
                     FSKITPKLFVFVLGQVFFALSLGFGVLITLSSYLDKSENLVKTATITGVMNTLIAVLA
                     GFMIFPSLFSFGVAPNSGPTLVFQSLPIVFSNMWGGTVFAVIFFSLLVVAALTTSLTI
                     YEVIITALQEKAKISRQKAIFITLATIFLLGNIPSALSDNILQDVQVMGKSIFDAFDY
                     ISGNILFILTALGSAIFVGFVLKEEAKEELGAGKMFTTIWFNYVRFVIPVIILVIFFN
                     SL"
     gene            complement(5761..6588)
                     /locus_tag="PXE92_002020"
     CDS             complement(5761..6588)
                     /locus_tag="PXE92_002020"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HDL5761233.1"
                     /translation="MNHPKHRAFLKWAGGKYRLIPDIQTHLPKKACLVEPFVGAGSVF
                     LNTDFERYILADINPDLINLFNVVKADVEEYIAQTKQLFLHPQANTEAFYKARRAEFN
                     RSKDIFRRSVIFLYLNRFGYNGLCRYNQKKGYNVPFGRYKTHYFPEKELRFFAEKAQK
                     ATFVCADFEQVFELAKNQLTDYVIYCDPPYAPLAQETNFTQYAGGGFSLEQQGRLATL
                     ALEMKGLGVPVLISNHDTDFTRRIYQSADITQIQVQRSIGQKVGSRVKVGELFALFI"
     gene            complement(6602..7690)
                     /gene="aroB"
                     /locus_tag="PXE92_002021"
     CDS             complement(6602..7690)
                     /gene="aroB"
                     /locus_tag="PXE92_002021"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDL5761234.1"
                     /translation="MLQVNVELKERRYPIIIGAGLLNQPASYSPLKSGDKVMIVSNPT
                     VATHYLSVVTNALKELGCHVDSVLIPDGEEYKTLESLNLIFTALLEKNHNRDTTLIAL
                     GGGVIGDVAGYAAASYQRGIRFIQIPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQP
                     VSVIVDTNTLHTLSKREVSAGLAEVIKYGAIFDVTFFEWLEKHIDDLVSLKQDELEYC
                     IQRCCQLKADVVARDETEKGDRALLNLGHTFGHAIEARMGYGVWLHGEAVSVGMLEAA
                     ELSRILGDLSPQEVARLEKLLARANLPTISPDGMEPAEYLPYMWRDKKVLAGQLRLIL
                     LKSLGEAYVSSQATESQVLASIERFTQR"
     gene            complement(7714..>8216)
                     /gene="aroK"
                     /locus_tag="PXE92_002022"
     CDS             complement(7714..>8216)
                     /gene="aroK"
                     /locus_tag="PXE92_002022"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HDL5761235.1"
                     /translation="FLIGPMGAGKSTIGRQLAQTLGMEFMDSDSVIEERAGADIDWIF
                     DVEGEEGFRKREERILNELTQNYGIVLSTGGGSILSKDNRNVLSARGIVIYLETTVDK
                     QFERTQRDKKRPLLQTEDPRKTLEELAKIRNPLYEEIADITIHTDEQSAKVVANQIID
                     MIDNLQ"
BASE COUNT         2555 a         1809 c         1413 g         2439 t
ORIGIN      
        1 ctcaaatttt aacaattttt tgccaaaaaa ttaagatatt taaccgcttg caccttatat
       61 tttaaaacct tgtccatcgt tccaagaaac cgtatattct agaggtaaac ggcaacttgg
      121 caacgctggg tttgctgctt taccgatagc tagtagcata acaggcaaat aacgttctgc
      181 atctatattc aataatttta atacagcagg gcgctcaaac acgcctatcg catgagtatc
      241 atagccctta tctttggcaa ttagcattaa ttgcattgcc gccaaactag tatcaattaa
      301 tacctgatct ctaatttctg cttgagttgc ttggttatga agatttagta aaaaatcaaa
      361 tttacgttca cgaaactctt tatgcaaaca cccagtttct accgattgat caacaattgc
      421 gcctaataat ttttcatatt gcaaatctgc caatatcacc acaatagcag acgctgtttc
      481 acaaggtggg ccattaaagg caacattttt tgataatgct gctttaagaa tttcaacatc
      541 aataatgaca aaacgccaag gttgcagatt tgcttttgag ggagcaagct gggataaagc
      601 gaccatttct tctaattcag ttctactaat cttaattgtt gaattaaaag ctttgatagt
      661 tttacgctgt tcaatcgtat gtttcaattc catctctttt ctcctatctc tcaaacaatt
      721 gagatagtct ataatttaaa gattaggaat gtaataattg aaaagagtta ttctgcatat
      781 ttattgaaat aggtcaaaat tatcaagtaa tcatattaga gcaggagtaa agatttagct
      841 tgcccaagca taggaactaa ggtgctttcc aaaatgactt tcaattaaac gtttcgtaat
      901 ttgatgttgc ggattcagta aaacctcttt cgtcaagcca tactctacta cttcgccact
      961 ttgcatcacc attattttat cggcaatatg tttgatcaga cctaaatttt gccccacata
     1021 aatataagca atcccttgtc gctgctggac acttaacatt aaattaatta attgtgtttt
     1081 gactgaaaaa tccagtgaat taatcgtatc atccgcaata ataatttccg gttctaaaat
     1141 taaagcacga gcaaacgcaa tacgctgctt ttgcccactg gaagcctctg aaataggaac
     1201 gagcgcttgc tcaggataca ttcctaccaa ttttagcgta ttaaaaatac gctcatttct
     1261 ttcctcttca tttaaatctg tcgccaagcg gagcggagca tctaaaattt gtcctatatt
     1321 ataattagga tcaaaggcat cgttagggtc ctgaaacatc atacgaatat gcttagctcg
     1381 gtatttataa tcgccaaatg aaagcggtgt tcctctaaaa atcagttctc cagatgttgg
     1441 cccaaccata ccagcaacca ttttagccaa ggtagatttc ccagctccgt tttcaccaat
     1501 aatcgctaaa gtttccttgc gatttagggt aaaagaaact tcttttaccg cataaaaatc
     1561 ttgtttatga aataggctac tacgttcaac aaaacgctta ttcagatgat taacttcaag
     1621 taatgccata ataaattggt gcttggaaat aaagtgatag tttaccgcaa aaaataaata
     1681 aaaaaagacc gcttatacaa gcggcctgat ttatggaatt ttttgcaaat tataaaacgt
     1741 tcacacagtt taagtcttcg aaagattgct ctaagcgttt agacatagac tcttccattt
     1801 tacgtaacca aacacgtgga tcgtagtatt ttttgtttgg tgcatcaggg cctgtcgggt
     1861 tacctaattg accttgtaaa tatgcttcgt ttgctttgta gaattgaaga ataccgtccc
     1921 acgcagccca ttgggtgtca gtgtcaatgt tcattttgat tgcaccgtag ctgattgctt
     1981 cacgaatctc ttcacgtgaa gaaccagaac cgccgtggaa aacgaagtct aatgactttg
     2041 ccggtaaacc acgctcttta gatacatact cttgtgaagc acctaagatt gatggtttta
     2101 attttacatt acccggcttg taaacaccgt gtacgttacc aaatgctgcc gcaatcgtga
     2161 aacgtgggct gattgggctt aattggtcgt aaacatataa aacttcagaa ggttgggtgt
     2221 aaagtttaga ttcatctaca tcagaattat ctacgccatc ttcttcacca ccggttacgc
     2281 cgatttcgat ttcaagggtc ataccgattt tgtccatacg ggctaaatat tcacggcaga
     2341 tttccatatt ttcttcgatt ggctcttcag ataaatcgat catatgtgaa gagaataacg
     2401 gacgaccggt ttctgcgaag tgtttttcgc ctgcttcaag taagccatcg atccaaggta
     2461 ataagttttt cgcagcgtgg tcggtgtgaa gaatcacagg cacaccatat tcttctgcta
     2521 attgatgaac gtgttttgca cccgcaatcg cccctaatac atctgcacga gcgcctgaag
     2581 ccggcttaat gcctttaccc gcatagaact gcgcaccacc atttgagaat tgcacgatta
     2641 ccggtgattt tacacgagcg gctgtttcta atacggcatt aactgaatct gaacccacgc
     2701 agtttactgc cggaatagcg aagttgtgtt ctttagcata agcgaaaact ttttgtacgt
     2761 cgtcgcctgt tactacaccc ggttttacga tgtttaataa tgacattttt ttcttccttt
     2821 gtatgaaatg tgcaaaagca cattgttaaa atatacggcc aaatcttgca aaattttcac
     2881 aaaatttgac cgcttgtaac tgttagccgt tagctcgttt ttctaagatt tccactgccg
     2941 gtaatacttt accttccacg aattctaaga acgcaccgcc accggttgaa atgtaagaaa
     3001 ttttgtcttt gataccgaat aaatcaatcg cagctaaggt atcgccacca ccggcaattg
     3061 agaatgcacc gtttgccgtt gcttctgcaa tcgcatttga aatcacttct gttcctttac
     3121 ggaagttagg gaactcaaac acgccgaccg gaccattcca aaggatggtt tttgaattac
     3181 ggataatttc agctaattgc tctgacgatt tttcaccaat atcgaaaatt gattcatcag
     3241 ctcgtacttc actcaccgct ttttccgttg ccggtgcagt ttcagagaat tcagtaccta
     3301 cacgcacatc aaccggaaca ggaatattgg ttacttgtgc taaacgtttt gcttcaggga
     3361 ttaaatcttc ttcgtataat gatttaccca cagcgtgacc ttctgcggca ataaaggtat
     3421 tggcaatacc accgcccacg attaattggt cggcaatttt tgaaagcgaa tcaagcacag
     3481 ttaatttagt agatacttta gaaccaccca caatcgctaa cattggacgt tgtggctctt
     3541 ttaatgcttt gcctaatgca tctaattcag tggctaataa cggacctgca cacgcaacag
     3601 gggcatattc tgccacaccg taagttgaac cttccgcacg gtgagctgta ccgaatgcgt
     3661 ccattacaaa cacatcacaa agtgatgcat atttttttgc taactcaggg tcgtttttct
     3721 tctcaccttt gttaatacgc acgttttcaa gcaccacgat ttcattctcg tttacttcaa
     3781 caccgtctaa gtaatcacgc actaaacgaa caggaacacc taaatctgat gcatttaagt
     3841 aatcaactac aggttgtaaa gagttttcct cttcaaatac gccttctgtc ggacgaccta
     3901 aatgcgaagt taccattact ttagcacctt tttgtaacgc taattttaag gttggaatgg
     3961 tagcaacaat acgggcatct gatgttactt tgccatcttt taccggtacg ttaaggtcag
     4021 cacgaataaa taaacgttta cccgctaaat caaggtcagt cattttaata acagacatag
     4081 tttgttcctc tttagattaa aatttaaaag tgataacggt cggattatat cagtttctaa
     4141 tcattttggg ctaacctaga tcaaataaat gattaatttt ttatcatttt agaatgctat
     4201 tatcctgact gttcttattc ccccccaata tgcttggtta attaagcaag aattgcaaat
     4261 tccccacaaa atttaaccgc ttgtcactaa aaataaagct gtttgaaaat ccattcaaac
     4321 agcttataga atttagagtg aattaaagaa aatcaccaag ataatcaccg gaatcacaaa
     4381 gcgaacatag ttaaaccaaa tagtggtaaa cattttaccc gcacctaatt cctccttcgc
     4441 ctcttctttt agaacaaagc caacgaaaat cgcgctacct aaggcggtta aaataaacag
     4501 aatattgcca ctaatataat cgaaggcatc aaaaatgctc ttgcccataa cctgcacatc
     4561 ttgcaatata ttgtcactta atgctgatgg aatattaccc aacagaaaaa tagtagccaa
     4621 agtaataaaa atagcttttt gacggctaat ctttgccttc tcttgcaatg cagtgataat
     4681 aacttcataa atagttaacg aggttgttaa tgccgccacc actaatagac taaaaaagat
     4741 aaccgcaaaa actgttcccc cccacatatt tgagaacaca atcggcaaac tttggaatac
     4801 taaagtcgga cctgaatttg gagcaacgcc aaagctaaat aatgacggaa aaatcataaa
     4861 accggcaagt accgcaatta aggtgttcat caccccagta attgttgctg tttttactaa
     4921 attctcgctc ttatcaaggt agcttgaaag ggttatcaac acaccaaaac caaggcttaa
     4981 tgcaaaaaat acttgaccca gcacaaacac aaacaatttt ggtgtgattt ttgaaaaatc
     5041 gggcatcaga taaaaggcaa tgccttcagc agcccccggt aaggtaatat ttcgaaccac
     5101 catcacaatc aggaaaataa acagaatcgg catcaaatat ttcactgaac gctcaatacc
     5161 gtccacaatg ccttttacca aaataaaata attcaccaat acaaaaagtg ccgtataagc
     5221 aataattgtc attgggctat taaaaatact ttgttggaag aattgttggg tcgtgccaac
     5281 ggtaacaggt tgagacagat ctagtgtccc cgtgagtaag ctaccgatat aatttaatac
     5341 ccaaccacca agtaccatat agtaggcaag aataccaaat gctccaagca agcccatata
     5401 gccaagaatt ttccaacctg aggcaatttt tttaccatta gcaaaaccgg caaaagcatc
     5461 aatagcattc actctcattc ggcgaccaat tacattctcc actaatatca tagggatacc
     5521 aattacgatc atcgcaatac aaaataaaaa cacataagca ccgcctccgt gttcccccac
     5581 aagataaggg aaacgccaag ttgcaccaaa accgactgtt gcaccagcaa cggtcataat
     5641 atacgccaat cggttagacc aagattggcg ttcttgttgt tgatttgcca tttaatactc
     5701 catcggctaa caataccgct tcaaccaaca agcggtcaga tttttagaaa atattacaaa
     5761 ttaaatgaag agtgcgaata actcgccaac tttaaccctt gagcccacct tctgccctat
     5821 tgaacgctgt acctgaattt gggtaatatc ggcagattga taaatcctac gggtaaaatc
     5881 agtatcgtga tttgaaatta atacgggaac gcctaatcct ttcatttcta aagccagtgt
     5941 tgccaaacgc ccttgttgct ctaggctaaa accaccgcca gcatattgcg taaaattcgt
     6001 ttcttgtgct aaaggagcgt aaggtgggtc gcagtaaatc acataatccg ttaattgatt
     6061 ttttgccaac tcaaagacct gttcaaaatc cgcacacaca aaagttgcct tttgtgcttt
     6121 ttcagcaaaa aaacgtagtt ctttttctgg aaaataatgg gttttataac gcccaaaggg
     6181 aacattgtac ccttttttct ggttataacg gcaaagtccg ttatagccaa atcgatttaa
     6241 atacaaaaaa atcaccgagc gacgaaaaat atcttttgag cgattaaact ccgcacggcg
     6301 tgctttataa aaggcttctg tattcgcttg tgggtgaaga aacagttgct ttgtttgcgc
     6361 aatatattcc tcaacatctg ctttcaccac gttgaaaaga ttaatcaagt caggattaat
     6421 atcagcaaga atataacgtt caaaatctgt attcagaaag accgaacctg caccaacaaa
     6481 aggctcgact aaacaagcct tttttggcaa atgggtttga atatctggaa ttaagcgata
     6541 tttaccgcca gcccatttta aaaaggctcg atgcttaggg tgattcattt cattttaaac
     6601 attaacgttg ggtaaaacgc tcaatagagg ctaatacttg agattctgtg gcttgcgatg
     6661 aaacgtaagc ttcaccaagt gatttcaata aaattaggcg taattgacct gccagtactt
     6721 ttttatctcg ccacatataa ggtagatatt ctgccggttc cattccatca ggtgaaattg
     6781 ttggcaaatt ggctcgggcc aataattttt ccaagcgagc aacctcttga ggacttaaat
     6841 cccccagaat acgagataat tccgcagcct ctagcatacc aaccgaaaca gcctctccgt
     6901 gtaaccatac accatagccc atacgtgctt caatggcgtg accaaaggta tgtcctaagt
     6961 ttagtaatgc acgatctcct ttttccgttt catctcgagc aaccacgtca gcttttagct
     7021 ggcaacaacg ctgaatacaa tattccagct catcttgctt gagactgacc aaatcatcaa
     7081 tatgcttttc aagccattca aaaaaagtaa catcaaagat tgcaccgtat ttgatgactt
     7141 ccgccaaacc agcactgact tctcttttgg ataaggtatg gagcgtattg gtatcaacaa
     7201 tcacagaaac aggctgataa aaagccccaa tcatattttt accgagtggg tggtttactg
     7261 ccgttttccc gcctactgaa gaatcaactt gagccagtaa agtggtcgga atttgtataa
     7321 aacgaatacc acgttggtaa gaggcagctg catagcctgc aacatcaccg attacaccac
     7381 cgcctaaagc aattaaagtg gtatcgcgat tatgattttt ttctaataat gcggtaaaaa
     7441 tcaaatttaa tgattctagc gttttatatt cttcaccgtc gggaatcaat accgaatcaa
     7501 cgtggcaacc cagctccttt aacgcatttg ttaccacact aagataatgt gtcgccaccg
     7561 ttggatttga gacaatcatc accttatctc cagattttaa tgggctataa ctagcaggct
     7621 gatttaataa ccctgcacca attataatcg ggtaacgacg ctcttttaat tccacattga
     7681 cttgtaacat atcttagctc ctttcttacc tggctactgt aaattatcaa tcatatcaat
     7741 aatttgattt gccactactt tagcgctctg ctcgtccgta tgaatagtaa tatctgcaat
     7801 ttcttcatac aatgggttac ggattttcgc taactcttcc aacgttttac gggggtcttc
     7861 tgtttgcaat aaagggcgtt ttttatctcg ctgagtacgt tcaaactgtt tatccactgt
     7921 cgtttctaaa taaataacga taccacgagc cgataacaca ttacggttat ctttagataa
     7981 aatcgaacca ccgccagttg aaagcacgat accataattt tgcgtcagtt catttagaat
     8041 acgttcttca cgcttacgga aaccctcttc accttcaaca tcgaagatcc aatcaatatc
     8101 cgcacctgct cgttcttcga tcacactgtc ggaatccata aattccatac ctaatgtttg
     8161 agcaagctga cgaccaatcg tacttttacc tgctcccatc ggcccaatca aaaaaa
//
LOCUS       DANMBQ010000108         8145 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.108, whole genome shotgun sequence.
ACCESSION   DANMBQ010000108 DANMBQ010000000
VERSION     DANMBQ010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8145
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.108"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..1995
                     /locus_tag="PXE92_002023"
     CDS             <1..1995
                     /locus_tag="PXE92_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5761236.1"
                     /translation="EIEQTRAAYDRLKRSGVASQNELRRASEATKQRVRELNAELGKT
                     SFGDKAGSFGRGLMGAGVGIAAGAAMARQPARNQMEFDRQLAMVANTAFSDRDVKGRI
                     DGKRELLDAVQKAVSVGGGSKEEALSSLDALLASGAVSTETALNLLPTLQKGAVATGA
                     SANDMAQIAISSMQQFGIKEEDIGRVLDMAVAAGQAGSFELADMASWLPQQMAAAKQA
                     GLSGIEGFERLLIANQQARVTAGTSNEAGNNLVNLLGKITAKETNERFKNIEYKDPKT
                     GKTKAIDFAKSMEHYKGKGQDSLQAFMSIMDDVVGSDKRYQELQAKLKTAKGEEQKRL
                     FNELTNLVEGTAIGEIISDRQALMALLGIKNNVQLGEKVQKDIQNSEGAVETSHAVIR
                     DTNAHKVESLKNTTEFAQMKNFEKVNGVLGTLAELLNKYANEYPNLTQFLSGATDAVK
                     IFGAALAASSVLDLLTGKKDKGGLIGDVLDKSSKASGGKGKVGKLLSVGGSFASVAGV
                     ATMLHGDQAPMSEERKAELRDPNYQARKMYEYKKEILGSRFHSFFRSNETLEQYRKDV
                     SAYEAKQKNSNTMGAVQGVLSTIPSLQELRPKVDSVTQTLSTYQADFQAFGATISAGI
                     EAGLASQSHTIANQITVELDGSVVAEKVAEYQFNFNKRMA"
     gene            1995..3287
                     /locus_tag="PXE92_002024"
     CDS             1995..3287
                     /locus_tag="PXE92_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA circularization protein"
                     /protein_id="HDL5761237.1"
                     /translation="MSGWTMPIQQASFKGVRFDVLAVDDSFERAVVEHAYPFVNGADL
                     EDMGLNTQTIRLQAVFFGSSYYTDYIRLLSVLQQKGADVLVHPIRGRLPNMLLVSANL
                     HTDAENINYVALDLTFKEATEMQPIFAFEDSLISKIDKLLLDLENLFDDGLRFWDSVG
                     VFDLKSRLLGLWGALFASFEAVRNLFDLDKKKYSIASSTSQRTYLRDGSGALNQLKEM
                     VDSGIQGRADLTTLSFKSQLLNITDAIDNTQAIVSKVARDEGFNRSKTVKLLGSDVVE
                     LGIMLDLIATTKLTKVLTELVEEREEELLIGDLELINQIVREHWLNIINKLREQQKNT
                     QKGVPSDKTKVIYETAEKLINNIRNVAHQFTALVLAVINKKPPLTVRMVMDSGTIHKV
                     AHAFYGDYERADELLRLNPHIRQPNFIERGTLLNCYWE"
     gene            3290..4417
                     /locus_tag="PXE92_002025"
     CDS             3290..4417
                     /locus_tag="PXE92_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761238.1"
                     /translation="MENEIVVEIDGSQHKNWKSYDIDSDFLIPADSFNFELGKSSNIE
                     VLPNYSGKTAIVKINGKTVLTGIVDTTHHTISKSGRGFSLNGRDKAAILVDCSAPITN
                     VQGLSLLDAVKKIVTPLGIKEVQLKAEKNPTLSKVDIDVGESAWEAIMRCANSAGLHC
                     WFDPKGVLIVGGADYAQPPVATLYCVKESGDSRKNNFVDATLSYDVSQSYSEVTFLAQ
                     KHGKDSDNAKHDFKWVYKNEEMELYKPKTIVLGDVENLEALMKQAKKQVSDWQLESFN
                     LTIIVPDHKTKDGTLWQAGQRVHVVCEEYDLDGIFFLMGRRFRLSRTGGTTTELRLKL
                     DGVWTPDAYQAKAQEARKRKGKKGRKKKEPVEYVGSWELGK"
     gene            4419..5081
                     /locus_tag="PXE92_002026"
     CDS             4419..5081
                     /locus_tag="PXE92_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5761239.1"
                     /translation="MMRKLAKQTKEVAKGVQDSVRAAFRGVLNLVKSGSDIQQVQVSA
                     LADETIQDLELMQHFGFTSVPPAGTQAVVIPLGGKTTHGIIVATENGSFRVKNLKNGE
                     TAIYDSSGSTIILKNGRVIDIECDSFNIKCKQYSVTASGGANFNTPKLETDQQFVSQG
                     QISGNGGMVVQGGSGASFTGSLTQQGGSISTDGDVVASGKSLVTHQHNEQGDGRPTSA
                     PI"
     gene            5200..5550
                     /locus_tag="PXE92_002027"
     CDS             5200..5550
                     /locus_tag="PXE92_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage GP46 family protein"
                     /protein_id="HDL5761240.1"
                     /translation="MDREISPLTRDYTSENITTLQNAVYIRLTTPKGSWWADGRVGSL
                     LHLIQREKDLSRVGLLAQQYAEEALQPIIDDGRAKSITVTHEQPKDGSLNLLISVIDN
                     RGVKFEFKHPVKLV"
     gene            5563..6624
                     /locus_tag="PXE92_002028"
     CDS             5563..6624
                     /locus_tag="PXE92_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL5761241.1"
                     /translation="MYQIPTLEDVRREILRDIQSLEPTADIEVDSDYFVRASALASCV
                     VGLYAHQNWIVRQYFPDTADSEYLEMHAKLRNLYRKNATYASGSLKVFGTAGSVINEG
                     LQVKFGERFYVTKSSDVIGDDGSATVRVISMATGASSNVKSESKAQLTAAPAGVSSDC
                     LLLPDVTGGTEVESDAALLARLLEQIRRPPSGGNKNDFRQWAESVDGVTSAFVYPLRR
                     GEGTVDIAITSGDTVPSDEIVRATQAYIDEVRPVTAKSVYVLKPVEKRVNFNIKVQLD
                     TDTTLDGVKAEIENALENYFLSLKPADTLIISQIEAVISDLVGVVDREIVQPTRNQTI
                     DAYREMGWFRLGDVTVELM"
     gene            6624..7214
                     /locus_tag="PXE92_002029"
     CDS             6624..7214
                     /locus_tag="PXE92_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HDL5761242.1"
                     /translation="MVTINSKHGKALGGLLPPVSYDPNGRWLALSLEVEGRELDRIDA
                     RAKTLIDAVDVSTGIFIDDWERVCGLTANSSLPLETRIERVIAKLNQLGGLSIGYITQ
                     VAKELGYCIKISEPQPFIAGLSRAGDMLWHKDIMWTFFVDICNPTDDYKRFRASVSMA
                     GDALMGRYKDPILESLLEEVKPAFSRVWVRYLGDIE"
     gene            7211..>8145
                     /locus_tag="PXE92_002030"
     CDS             7211..>8145
                     /locus_tag="PXE92_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761243.1"
                     /translation="MKQVMNPINTPTQRFKDGNPATGEYGTIVTAEFLNNVQDSVINT
                     QQELHSVLAEAGIEANDEQVNQVAKAIKKIAGDATRDNFNALANPDGYKHIGRCKSVA
                     ELRTIRPTEHGQRILVDAYYEDGTTGGGEFVADLQDLVTPDDGGVCFVVNNNGGRWKR
                     VDLSHLTLFDFWAVGDGVTNDESAFVNAMRYSQFFIENGTFRINNAVNSVRDNVKILG
                     NKTGKLVLGAGIQQAGAEVFNINHSNYFISGFCIETPNKAIGIRFKSLDDAGVKNLHI
                     DNVVFNGTFYGVRAGESIQADTNYPTDNVIVQNCQS"
BASE COUNT         2387 a         1493 c         2061 g         2204 t
ORIGIN      
        1 gaaattgaac aaactcgtgc agcctatgac cgcttaaaac gctcaggtgt tgcctcgcaa
       61 aatgagctac gccgtgcctc agaagcgact aagcaacgag tccgagagtt aaatgctgaa
      121 ttgggtaaaa ccagttttgg ggataaggca ggaagttttg ggcgtgggtt gatgggtgca
      181 ggggttggaa ttgctgcagg tgcagcaatg gctcgccagc ctgcaagaaa tcaaatggaa
      241 tttgatagac agcttgcaat ggtagcgaat accgcctttt cagatcgtga tgtgaaaggg
      301 cgtattgatg ggaaaagaga gttacttgat gccgtacaga aagcagtaag tgtaggcggt
      361 ggctcaaaag aagaagcgtt gagctcacta gacgctttac ttgcctcagg tgctgtttct
      421 accgaaaccg ctctcaattt actcccaacg ttgcagaaag gtgcggtcgc aacaggggca
      481 agtgcaaatg atatggctca aattgctatt tcctcaatgc aacaatttgg gattaaagaa
      541 gaggatattg gtcgagtctt agatatggca gttgccgctg ggcaagccgg tagctttgag
      601 cttgcagata tggcaagttg gttgcctcaa caaatggccg ctgcaaaaca agctggctta
      661 agcggcattg agggatttga gcgactttta attgcaaacc aacaggctcg tgtcactgcc
      721 ggtacaagta acgaggctgg taataattta gtgaatctgt tgggtaagat tactgctaaa
      781 gaaactaatg agcgttttaa gaatattgaa tataaagatc cgaaaactgg caaaaccaaa
      841 gcgattgatt ttgcaaaatc tatggagcat tacaagggaa aagggcaaga ttcattgcag
      901 gcttttatgt ctattatgga tgacgttgtc gggagtgata aacgctatca agaactacaa
      961 gctaaactta aaactgctaa aggcgaagag cagaaacgct tattcaatga attaacaaac
     1021 ttagttgaag gtacggcaat tggagaaatt atttctgatc gccaagcatt aatggctcta
     1081 ttagggataa agaataatgt tcaattaggt gaaaaagtac agaaagatat tcagaatagt
     1141 gaaggagctg ttgaaacctc tcacgctgtt attcgggata ctaatgctca taaagttgaa
     1201 tcattaaaaa atacaactga atttgcacaa atgaaaaact ttgaaaaagt aaatggagtg
     1261 ttaggcacat tagctgaatt actgaataaa tacgccaatg aataccctaa cttaactcaa
     1321 tttttaagtg gtgcaacaga tgccgttaaa atttttggag cagctcttgc tgcatcaagt
     1381 gtgcttgatt tattaaccgg taaaaaagac aagggcggac taattggtga tgttttggat
     1441 aaatcatcaa aagctagtgg aggtaaaggt aaggtaggta aattgctttc ggttggtggc
     1501 tcttttgcta gtgttgcagg cgttgccaca atgctacacg gcgaccaagc cccgatgagt
     1561 gaggagcgaa aagcagagtt aagagatcct aattatcaag ctcgtaaaat gtacgagtac
     1621 aaaaaagaga ttttaggtag ccgtttccac tcgttttttc gtagtaatga aacccttgag
     1681 caatatcgga aagatgtgag tgcttatgag gctaagcaaa agaatagcaa tactatggga
     1741 gctgtacaag gggttttaag taccattccg agcttacaag agttacgccc taaagttgat
     1801 tcggttactc aaaccctatc cacctatcaa gccgactttc aggcttttgg ggcaacgatt
     1861 tcagccggta ttgaggcagg gcttgcctcg caatctcata cgattgcaaa tcaaatcacc
     1921 gtggagctgg acggttcggt ggtggctgaa aaagtggctg aatatcagtt taattttaac
     1981 aagaggatgg cgtaatgagc ggttggacaa tgcctattca acaggcgagt tttaaaggtg
     2041 tgcgttttga cgtgcttgca gtggatgata gctttgagcg agcggtagtt gaacacgcct
     2101 acccttttgt aaatggggct gatttagagg atatggggct aaacacccaa actattcggc
     2161 tgcaagcggt cttttttggc tcaagctatt acacggacta tatccgctta ctttcagttt
     2221 tgcagcaaaa aggggctgat gtattagtcc accctattcg tgggcgttta ccgaatatgt
     2281 tactcgtttc ggcgaatcta cataccgatg ccgaaaatat caattatgtt gccttagatt
     2341 tgacctttaa agaggcaacc gaaatgcagc cgatttttgc ctttgaagat tcgctgattt
     2401 cgaaaatcga caagctgcta cttgatctcg aaaacctgtt tgatgatggc ttgcgttttt
     2461 gggatagcgt tggggtgttt gatctgaaat ctcgtttgct tgggctttgg ggggcgttgt
     2521 ttgcctcgtt tgaggcggtg cgtaacctgt ttgacttgga caagaaaaaa tacagcattg
     2581 cctcatcaac ctcacaacgc acctatttaa gagacggttc gggggcattg aatcagttaa
     2641 aagaaatggt ggatagcggt attcaggggc gtgctgattt aacgacactc tcgtttaaat
     2701 ctcagttact caatattact gatgcgatag ataacactca ggcgattgtg agcaaagtgg
     2761 ctagagatga gggttttaac cgctcaaaaa cggttaagtt acttggctct gatgtggttg
     2821 agcttggcat tatgcttgac cttattgcca cgactaagct caccaaagtc ttgactgagc
     2881 tggtagaaga gcgtgaggaa gagctgctaa ttggtgattt agagttaatt aaccaaattg
     2941 tgcgtgagca ttggctgaat attatcaaca aactgcgtga gcaacagaag aacactcaaa
     3001 aaggcgtgcc gagtgataag acaaaagtta tctacgagac cgcagaaaag ctgatcaaca
     3061 atatccgtaa tgttgcccat cagtttactg cacttgtgct tgcggtaatt aataaaaaac
     3121 cgcctttgac cgtgcgaatg gtaatggata gcggcacaat ccataaagta gctcacgcct
     3181 tttatgggga ttatgagcga gcggatgagc tattacgtct taatccgcat attcgccagc
     3241 caaactttat tgagcgaggc acgctgttaa attgttattg ggagtaaaaa tggaaaatga
     3301 aattgtggtg gagattgacg gctcgcagca taaaaactgg aaaagttatg atattgacag
     3361 cgatttttta attcctgctg atagttttaa ttttgagttg ggtaaatcta gcaatataga
     3421 ggttttacct aattattcgg gcaaaacggc aatagttaaa atcaatggca aaacggtgct
     3481 cactggcatt gtggatacca cacatcacac cattagcaaa agcgggcgtg ggtttagcct
     3541 aaatggacgt gataaagccg ctattttggt ggattgctct gccccgatta ccaatgtgca
     3601 agggctctct ttgcttgatg ctgttaaaaa aattgtaacc cctcttggga ttaaagaggt
     3661 gcaactgaaa gccgagaaaa acccgacttt aagcaaggtg gatattgatg tgggtgaatc
     3721 ggcgtgggag gcgattatgc ggtgtgccaa ctcggcaggt ttgcattgtt ggtttgaccc
     3781 caaaggcgtg ttaattgtcg gcggtgcgga ttacgctcaa ccgcccgttg ccacgttata
     3841 ttgcgtgaaa gagtcggggg atagccgtaa aaataacttt gttgatgcaa cactttctta
     3901 tgatgtgtcg caaagctatt cggaggtcac ttttcttgct caaaaacacg gcaaagattc
     3961 tgataatgcc aagcacgatt ttaaatgggt gtataaaaat gaggaaatgg agctttataa
     4021 accgaaaact atcgtgctgg gcgatgtgga gaacctcgaa gccttgatga aacaggcgaa
     4081 aaaacaggta tcagattggc agttggagtc atttaacctc acgattattg tacctgacca
     4141 taaaaccaaa gacggcacgt tgtggcaagc tgggcaacgt gtgcacgtgg tatgtgagga
     4201 gtatgattta gatggtattt tctttttaat ggggcgacgt tttcgactct ctcgcacggg
     4261 tggcacaacc accgaattgc ggttaaaact ggatggcgtg tggacacctg atgcttatca
     4321 agctaaagca caagaggctc gcaagcgtaa aggcaaaaaa ggacgtaaga aaaaagagcc
     4381 tgtagaatat gtaggctcgt gggagttggg aaaataatat gatgagaaaa ttagcaaaac
     4441 agactaaaga ggtggcaaaa ggtgtgcaag atagcgtgcg tgctgctttt agaggggtat
     4501 taaatttagt caagagtggc agtgatattc agcaggtaca ggtgtccgct ttagcggacg
     4561 aaactatcca agatttagag ctaatgcagc attttggttt cacttccgtg ccacctgccg
     4621 gcacgcaagc ggttgttatc cccttaggtg gtaaaaccac gcacggtatt attgtggcga
     4681 ctgaaaacgg ctcgtttagg gttaaaaatc taaaaaatgg tgagacggct atttatgatt
     4741 caagcggctc aactatcata ttaaaaaacg ggcgagtgat tgatattgag tgcgatagct
     4801 ttaacattaa atgcaagcaa tattccgtca ccgcaagcgg tggagcaaat tttaacaccc
     4861 cgaaactaga aaccgaccag cagtttgtgt ctcaagggca gatcagcggc aacggtggaa
     4921 tggtagttca aggcggaagt ggtgcaagtt tcactggctc attaacacaa caaggaggca
     4981 gtatctcaac tgatggtgat gtggtggcat cgggtaaatc actggttaca catcaacaca
     5041 acgaacaagg cgatggcaga cctacctctg ctccaattta acttacaagc taatttacaa
     5101 gcggtctaat tttgcaaatt ttttgtagaa aaagaccgct tgccatttgt ggaagtctct
     5161 ccccgttact cctgtcttta atgtctctac catagcaata tggacagaga aatcagcccg
     5221 ctcactcggg actatacaag tgaaaatata actacactgc aaaatgccgt gtatatcaga
     5281 ctaactactc cgaaaggctc gtggtgggca gatgggcgtg taggttctct gctccatctt
     5341 attcaacgtg agaaagattt aagccgtgtg gggctattag ctcaacagta cgccgaagag
     5401 gctttgcagc cgattattga tgacggacga gccaaaagca ttacggtgac acacgagcag
     5461 ccaaaagacg gctcgttaaa tcttttaatc tccgttattg ataatcgtgg ggttaaattt
     5521 gagtttaaac accctgtaaa actggtttag gtggttttta aaatgtatca aatcccaacg
     5581 cttgaagatg ttagaagaga aattctgcga gatattcaat ctttagagcc aactgctgat
     5641 attgaggtgg attcggatta ttttgttcgt gcctccgctt tggcaagctg tgtggtgggg
     5701 ctgtatgctc accaaaactg gattgttcgt cagtatttcc cagatacggc agactccgaa
     5761 tacctcgaaa tgcacgctaa attgcgaaat ctttaccgta aaaatgcgac ctatgcgagt
     5821 ggttcgttga aagtttttgg tactgctggc tcagtaatca atgagggctt gcaagttaaa
     5881 tttggcgagc gtttttatgt aaccaaaagc tcggacgtta ttggtgatga tggctctgca
     5941 acggtgcgag tgatttcaat ggcaacaggg gcatcaagca atgttaaatc tgaaagtaaa
     6001 gcacaactga ctgctgctcc tgctggcgta tcaagcgatt gcttgttatt gcctgatgtg
     6061 acaggcggga cggaagtgga aagcgatgcg gcattgctgg ctcggttatt agagcagatt
     6121 cgccgaccac cgtcaggcgg gaataaaaat gacttccgcc aatgggcaga aagcgttgat
     6181 ggcgtaacct ctgcgtttgt ttatccatta cggcgtggcg agggtacggt agatattgca
     6241 atcacctcag gtgataccgt gccaagtgat gaaatcgtgc gagcaactca agcttatatt
     6301 gatgaagtcc gccctgttac ggctaaatcg gtttatgtac ttaagccagt tgaaaaacgg
     6361 gtcaatttta acatcaaagt gcaacttgat acggatacga cgcttgatgg tgtaaaagcg
     6421 gaaatcgaaa acgctttaga gaattatttt ttatcactca aacctgctga caccttaatt
     6481 atttcgcaaa ttgaggcagt aattagtgat ttagtgggcg tagtagatcg tgagattgta
     6541 cagccaacca gaaaccaaac gattgatgcc taccgtgaaa tgggctggtt cagattgggt
     6601 gatgtaactg tggagttgat gtgatggtaa cgattaactc taaacacggc aaggcattgg
     6661 gcggtttatt accgcctgta tcgtatgacc caaacggcag atggctagcg ttatcccttg
     6721 aagttgaggg gagagagcta gaccgcattg atgcgagagc caagacttta atcgatgccg
     6781 ttgatgtatc aacaggcatt tttattgatg attgggagcg ggtttgtggc ttaacggcga
     6841 atagctcact accgcttgaa acccgaattg agcgtgtgat tgcaaagctg aatcagttgg
     6901 gtggattgtc gataggctat atcactcaag tggccaaaga gcttggatat tgcatcaaaa
     6961 ttagtgagcc acaacccttt attgctgggc taagccgagc tggggatatg ttatggcata
     7021 aagacattat gtggacattt tttgtggata tttgcaaccc cacagatgat tacaagcgtt
     7081 ttagagcaag tgtgtcaatg gctggcgatg cgttaatggg acgatacaaa gacccaattt
     7141 tagaaagtct acttgaagag gtaaaacctg catttagccg tgtgtgggta agatatttag
     7201 gagatattga atgaaacaag tgatgaatcc gattaatacc ccaacacagc gttttaaaga
     7261 tggcaaccct gccactggtg aatatggcac gattgtgact gctgaatttt tgaataacgt
     7321 ccaagattcg gtcattaaca cccaacaaga attgcacagt gtacttgctg aagcaggaat
     7381 cgaagcaaat gacgaacaag ttaatcaggt ggctaaagca atcaagaaaa ttgcgggcga
     7441 tgctactcgt gataatttta acgcattagc caaccctgat ggttacaaac acatcggtcg
     7501 ctgcaaatcg gttgcggagt tacgtactat ccgcccaacg gaacacggtc agcgtatttt
     7561 ggtggatgct tactatgagg acggcacaac aggcggtggg gagtttgtgg ctgatttgca
     7621 ggatttagtt acgcctgatg atggtggggt ttgttttgtt gtgaataata atggggggcg
     7681 gtggaagcgt gttgaccttt cacatcttac attatttgat ttttgggccg tcggtgacgg
     7741 ggtaacaaat gatgaatcag catttgtaaa tgctatgaga tattctcaat tttttatcga
     7801 aaacggtaca tttcgtatca acaatgccgt taattctgtt cgcgataatg tgaaaatttt
     7861 gggcaataag accggcaaat tagtattagg tgcaggtatc cagcaagcag gggccgaagt
     7921 ttttaatatt aatcacagca attattttat ctcgggtttt tgtattgaaa caccgaacaa
     7981 agcaattggt attcgattta agtctttgga tgatgctggt gttaaaaatc tccatattga
     8041 caatgttgtg tttaatggca ccttctacgg ggtcagggca ggtgaaagta ttcaggcgga
     8101 tactaattac ccaactgata atgtgattgt acaaaactgc caatc
//
LOCUS       DANMBQ010000109         8061 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.109, whole genome shotgun sequence.
ACCESSION   DANMBQ010000109 DANMBQ010000000
VERSION     DANMBQ010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8061)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8061)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8061
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.109"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..3071
                     /gene="fdnG"
                     /locus_tag="PXE92_002031"
     CDS             <1..3071
                     /gene="fdnG"
                     /locus_tag="PXE92_002031"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_except=(pos:585..587,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HDL5761244.1"
                     /translation="QISRRKFFKVCAGGMAGTSAAMLGFAPATALAAPREYKLLRAKE
                     TRQTCTYCAVGCGMIMYSLGGEAMNSKGKLIHIEGDSDHPVSRGALCPKGAGALDYVN
                     SDRRVHYPEVREAGSSEWKRISWHEAIERIARHMKNDRDENFVTHNEAGLEVNRWMTA
                     GFLAGSACSNETGIVTQKFIRSLGMIFTDNQASIUHGPTVASLAPSFGRGAMTNHWVD
                     IKNSDLVIVMGGNAAEAHPVGFRWAVEAKKQNGAKLMVVDPRFNRSAAVADIYIPLRP
                     GTDIAFLLGAVNYLLKNDKIQHEYVKHYTNATFLLNEGFKFEDGLFTGYDEATRTYKD
                     KSTWAYQLDEQGQPKRDMTMQDPRCVINMLKDHVSRYTPEMVERITGTPQKDFLIFCE
                     EIAKTSAPDKAATFLYALGWTQHTVGAQNIRSMAIIQLLCGNIGVSGGGVNALRGHSN
                     VQGITDLGLFPHMLPGYIRLPTEADATLESYLNAIAPKTLVAGQVNYGQNNPKFAVSM
                     LKTFYGDKATKENEFGYHYLPKYPKGGTDHFRFIEQMYQGKVNGYFCQGMNPIASYPN
                     SQKLIKALSNLKYLVIFDPLITDTSEFWKNHGEFNNVNPSEIQTEVFRLPTTCFAEED
                     GSIANSGRWLQWHWKAADAPHEAKPDVDILSEIRAELIHLYHKEGGKAPLEPLEAMTW
                     NYMNPLEPKPEEIAKENNGYALEDLKDADGNIIVKKGELLSSFTQMRDDGTTSGGCWI
                     YCGQWTPKGNQMANRDNSDPSGLGNTLGWAFSWPVNRRILYNRASADLSGKPWNPKRQ
                     LVKWNGKNWNYVDVADYGTAPPNSPVTPFIMQPEGVSGLFVRERMQDGPFPEHYEPFE
                     TPIGTNPLHPNVISSPVARILPSDKEDLGTSDEFPYVGTTYRLTEHFHYWTKNALINV
                     IAQPEQFVEIGEKLAEEKGIKNGDKVRVWSKRGEIKAVAVVTKRIRSLVSDGKPIHTI
                     GVPIHWGFAATTGAKKGYFANNLTVRTGEPNSNTPESKCMLLNIEKIVGA"
     gene            3074..3988
                     /gene="fdxH"
                     /locus_tag="PXE92_002032"
     CDS             3074..3988
                     /gene="fdxH"
                     /locus_tag="PXE92_002032"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HDL5761245.1"
                     /translation="MSTVQTQNIIKISATSALTPAPQARSHQVEVAKLIDVTTCIGCK
                     ACQVGCSEWNDIRSDVNANCVGVYDNPADLNAKAWTVMRFNEVEENDRLEWLIRKDGC
                     MHCAEPGCLKSCPSPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNPDDNRVY
                     KCTLCVDRVNVGQEPACVKTCPTGAIRFGSKEEMKFYAEQRIADLKSRGYENAGLYDP
                     EGVGGTHVMYVLHHADKPELYSGLPKDPKIDTTVTLWKDVLKPVAAVALGGLALAEVA
                     HYITVGPNVEEDLEEHHHSENAEGGKHE"
     gene            3981..4658
                     /locus_tag="PXE92_002033"
     CDS             3981..4658
                     /locus_tag="PXE92_002033"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HDL5761246.1"
                     /translation="MSKKFEITNDTKIVRHKPLARVSHWFLVISFFMTMFTGVAFFFP
                     DFAWLTEILGTPQIARAVHPFTGIIMFIAFIIMALIYWHHNIPEKNDIRWAKGIVEVL
                     KGNEHKVSDNGKYNLGQKLLFWTLILAMFTLLATGIIMWRQFFSHYFSIPMLRIAILL
                     HSASAFMLFTGILVHMYMAFWVKGSIRGMVEGWVTVRWAKKHHPRWYREEVLPELERQ
                     VAEQNNK"
     gene            4714..5631
                     /gene="fdhE"
                     /locus_tag="PXE92_002034"
     CDS             4714..5631
                     /gene="fdhE"
                     /locus_tag="PXE92_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HDL5761247.1"
                     /translation="MSIKILPQDDIKQAASSFQQPELLFANPKNLYLRRAKRLRELAK
                     QNPFGEYMEFSANLVDIQLALLESQPIADYSQKITACVERTQGETPLNAQNFQRTDEW
                     RTLLLAIIEKFKPYANDTVLATIEVLEKAAKSELDTLADNLLNERYELVGADKAVFIW
                     AALSLYWVQLAQQLPRNSRAEIGHKHLCPVCNSAPVSSVIHFGEAQGLRYLHCSLCES
                     EWHVVRTKCTNCDETGKLDYWSLDTVEAAVKAESCGDCHSYLKVLYQDKDVNVEPVAD
                     DLATLFLDSEMEQKGLSRSGINPFLFQVE"
     gene            complement(5701..6087)
                     /locus_tag="PXE92_002035"
     CDS             complement(5701..6087)
                     /locus_tag="PXE92_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761248.1"
                     /translation="MLRNFMIMLHFIYGFAMKNAFSFFVISLFLTMNSISYASNPIPS
                     NKEKLNGVKKQQDKPKFRISERKVLKNKEKDEEVSNFSMEELRVGAQRPLDDSVIQYF
                     KSQCRYAFMSDREIIANRCEVKKIAD"
     gene            complement(6098..7468)
                     /gene="gorA"
                     /locus_tag="PXE92_002036"
     CDS             complement(6098..7468)
                     /gene="gorA"
                     /locus_tag="PXE92_002036"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009499791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HDL5761249.1"
                     /translation="MAKHYDYIAIGGGSGGIASINRAASYGQKCAIIEAKHLGGTCVN
                     VGCVPKKVMFYGAQVAEAINHYAPDYGFDITVNNFDYAKLVESRQAYIGRIHTSYGNV
                     LAKNNVDVLNGFARFKDAKTLEVSYADGSVEEVTADHILIATGGRPTVPNVKGAEYGI
                     TSDGVFALDALPKSVAIVGAGYIAVELAGVFNSLGVNTHLFVRQHAPMRNQDPLIVDT
                     LLEVLAQDGIELHTQATPQEVVKNADGSLTLKLQDGRETSVESLVWAIGREPATDKIN
                     LEAAGVETNERGFIKVDKFQNTNVPNIYAVGDIIEGGIELTPVAVAAGRRLSERLFNN
                     KPNEHLDYSLVPTVVFSHPPIGTVGLSEPKAIEQYGAENVKVYKSSFTAMYTAVTQHR
                     QPCRMKLVCVGEGEKVVGLHGIGFGVDEMIQGFAVAIKMGATKADFDNTVAIHPTGSE
                     EFVTMR"
     gene            complement(7545..8039)
                     /locus_tag="PXE92_002037"
     CDS             complement(7545..8039)
                     /locus_tag="PXE92_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013746024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HDL5761250.1"
                     /translation="MLGKIIFASRWLQLPIYLGLIVVQGIYAYKFIKSLYHLVINLNE
                     MDSNTVMLAVLNLIDVVMIANLLVMVIVGGYETFVSRLKVDDHPDQPEWLDHVNATIL
                     KVKLSMAIISISSIHLLQTFINASNLDEKQMMWQVVIHLAFIVSALAMAYIDKMLNSG
                     HMKH"
BASE COUNT         2444 a         1765 c         1661 g         2191 t
ORIGIN      
        1 tgcagatctc aagacgtaag ttcttcaagg tctgtgcagg tggtatggcg ggaacttctg
       61 ctgcaatgtt gggttttgct ccagcaacag cattagctgc accgcgtgag tataagctct
      121 taagagcaaa agaaactcga caaacctgta cttactgcgc ggtaggctgt ggcatgatta
      181 tgtacagctt aggcggcgaa gcaatgaaca gcaaaggaaa gttaattcat attgagggtg
      241 attctgacca tccagtaagc cgtggggcgt tatgtccgaa aggtgcaggg gcgttggact
      301 atgttaatag tgaccgccgt gtgcattatc cggaagtgcg tgaagccggt tcaagtgagt
      361 ggaaacgcat ttcttggcac gaggcaattg aacgtattgc ccgccatatg aaaaatgacc
      421 gtgatgagaa cttcgtcacc cacaatgaag cagggctgga agtaaaccgt tggatgacgg
      481 caggtttctt ggcaggctcg gcgtgtagta acgaaaccgg tatcgtcacc cagaagttta
      541 tccgctctct cggtatgatt tttaccgaca accaagcgag tatctgacac ggaccaacgg
      601 tagcaagtct tgctccatca tttggtcgcg gtgcgatgac caaccactgg gttgatatta
      661 aaaactccga tttagtgatc gttatgggcg gtaacgcagc cgaagctcac cctgtgggtt
      721 tccgttgggc agttgaagcg aaaaaacaga acggtgcgaa gttaatggtg gtagatccac
      781 gctttaaccg tagtgctgcg gtggcggata tttatatacc attgcgtccg ggtacggaca
      841 ttgcgttctt gttaggtgcg gtaaactacc tgcttaaaaa cgacaaaatt caacacgagt
      901 atgtgaagca ttacaccaat gccacattct tactcaacga agggtttaaa ttcgaagacg
      961 ggcttttcac cggctacgat gaagccactc gtacctataa agacaaatcc acttgggctt
     1021 atcagttaga tgaacagggt cagccgaaac gggatatgac aatgcaagat ccacgttgtg
     1081 tgatcaatat gctcaaagac cacgtttccc gctatacgcc tgaaatggta gaacgcatta
     1141 ccggtacgcc acaaaaagat ttcctgattt tctgtgaaga gattgcgaaa acctcagcgc
     1201 cggataaagc cgccaccttc ctctatgcct taggttggac acaacacacc gtgggcgcac
     1261 aaaacattcg ctcaatggcg atcattcagt tgctgtgcgg taacattggt gtctccggcg
     1321 gtggggtaaa cgcactgcgt ggtcactcta atgtacaagg gattaccgac ctaggcttgt
     1381 tcccacatat gttgccgggc tatatccgcc tgccaaccga agcggacgca accttagaaa
     1441 gctacttaaa tgcgattgca ccgaaaacct tagtggcagg gcaagtaaac tacgggcaaa
     1501 acaacccgaa attcgctgtg agtatgctca aaaccttcta cggcgataag gcaaccaaag
     1561 agaacgagtt cggctatcac tatttaccga aatacccgaa aggcggtaca gatcacttcc
     1621 gctttatcga acagatgtat caaggcaaag tgaacggcta tttctgccaa ggtatgaacc
     1681 cgattgcctc ttaccctaac tcgcagaagt taattaaagc gttgagcaat ttgaaatatt
     1741 tagtcatttt tgacccgctt attaccgata cttccgagtt ctggaaaaat cacggtgagt
     1801 tcaacaatgt gaacccgtct gaaattcaaa ccgaagtgtt ccgcttgccg accacttgct
     1861 ttgcggaaga agatggttca attgcgaact ccggtcgctg gttacaatgg cactggaaag
     1921 cagcagacgc accacacgag gcaaaaccgg acgtggatat tctgtctgaa atccgtgccg
     1981 aactgatcca cctttatcat aaagaaggcg gaaaagcacc gcttgaaccg ttagaagcga
     2041 tgacgtggaa ctatatgaac ccgttagaac cgaagccgga agagatcgcc aaagagaaca
     2101 acggttatgc attggaagat ctgaaagatg cagacggcaa catcatcgtg aaaaaaggcg
     2161 aactattatc cagctttaca caaatgcgtg atgacggtac aacctccggt ggttgttgga
     2221 tctactgcgg tcaatggact ccgaaaggta accaaatggc gaaccgtgat aactccgacc
     2281 catcaggctt aggtaacacc ttaggctggg cattctcgtg gccggtaaac cgccgtattc
     2341 tatacaaccg tgcatcggca gatttaagcg gtaaaccgtg gaacccgaaa cgccagctag
     2401 ttaaatggaa cggtaaaaac tggaactatg tggacgttgc cgattacggt acagcaccac
     2461 caaatagccc tgtgacacca tttattatgc aaccggaagg ggtatccggc ttgttcgtgc
     2521 gtgaacgtat gcaagacggt ccattccctg agcattatga accgtttgaa acgccaatcg
     2581 gcacgaaccc gttacacccg aatgtaatca gcagtccggt ggcacgcatt ctgccgagcg
     2641 ataaagagga tttaggcacc agcgatgagt tcccatatgt cggtacaact taccgcttaa
     2701 ccgaacactt ccactactgg acgaaaaatg ccctgattaa cgtcattgct caaccggagc
     2761 aattcgtgga aatcggcgag aaacttgccg aagagaaagg cattaaaaat ggcgacaaag
     2821 tacgtgtttg gtctaaacgt ggcgaaatta aagccgttgc cgtggtgact aaacgtatcc
     2881 gttcattggt ctctgacggc aaaccaatcc acactatcgg tgtgccgatc cactggggct
     2941 ttgcggctac aaccggtgcg aaaaaaggct attttgccaa taacttaacc gtgcgaacag
     3001 gtgaaccaaa ctcaaataca cctgaatcga aatgtatgtt attaaacatt gagaaaattg
     3061 tgggggctta acaatgagta cagttcaaac tcaaaacatt attaaaatct ccgcaacctc
     3121 ggcgctgaca ccggcgccgc aggctcgttc gcaccaagtg gaagtagcga aactgatcga
     3181 tgtcaccact tgtatcggct gtaaagcctg tcaagtgggc tgttcagaat ggaatgacat
     3241 tcgctccgat gtaaatgcaa actgtgtcgg cgtgtacgac aaccctgcgg atctaaatgc
     3301 gaaagcgtgg acagtaatgc gctttaacga agtagaagaa aacgaccgtt tagaatggtt
     3361 gatccgtaaa gacggctgta tgcactgtgc cgagccgggt tgcttgaaat cttgcccgtc
     3421 accgggtgcg attatccaat acgccaacgg tattgttgat ttccaatccg acaaatgtat
     3481 cggttgtggc tactgtatcg caggttgtcc gttcaacatt cctcgtatga atccggacga
     3541 taaccgtgtt tacaaatgca ccctgtgtgt ggatcgtgtc aatgttggtc aagaaccggc
     3601 ttgcgtgaaa acctgcccga ccggtgcaat ccgcttcggt agcaaagaag agatgaagtt
     3661 ctatgcagaa caacgcattg ctgatctgaa atctcgtggc tatgaaaatg ccggcttgta
     3721 cgaccctgaa ggcgttggcg gtacgcacgt aatgtatgta ttacatcatg ccgacaaacc
     3781 ggagctttat tcaggcttac cgaaagatcc gaagattgat accacagtaa ccttatggaa
     3841 agacgtttta aaacctgtgg cggcagtagc gttgggtggt ttagctttag cagaagttgc
     3901 acactatatt accgttgggc caaacgttga ggaagatctt gaagaacacc accatagcga
     3961 aaatgcagaa ggaggcaaac atgagtaaga aatttgaaat cacgaacgat accaaaatcg
     4021 ttcgtcataa gcccttagct cgtgttagcc actggttctt agtaatctct ttttttatga
     4081 cgatgtttac cggtgttgcc ttcttcttcc ctgactttgc ttggcttacc gagattttag
     4141 gtactccaca gattgcccgt gcagtccacc catttaccgg gattataatg tttattgcat
     4201 ttattattat ggcgttaata tattggcacc ataatatccc tgagaaaaat gatattcgtt
     4261 gggcaaaagg cattgttgaa gtactaaaag gtaatgagca taaggtttcc gataatggaa
     4321 aatacaattt gggtcaaaaa ttactctttt ggactcttat tcttgcgatg ttcactcttt
     4381 tagccacagg gattattatg tggagacaat ttttctctca ctacttctcg attcctatgc
     4441 taagaattgc aattttactt cattcagcaa gtgcatttat gctatttacc ggaattttag
     4501 tacatatgta tatggcattc tgggtaaaag gctcaatcag aggtatggtt gagggttggg
     4561 ttaccgttcg ctgggcaaaa aaacaccacc caagatggta ccgtgaagaa gtgctacctg
     4621 aattagaaag acaagtagct gagcaaaata ataaataacc tcaagtgcgg tattattacc
     4681 gcacttttat tttattggtt taaaaagaat attatgagta tcaaaatact acctcaagat
     4741 gatatcaaac aagcagctag ttcatttcag caacccgagc tcttatttgc taatcccaaa
     4801 aatctgtatt tacgccgcgc taagcggcta cgtgaattag ccaagcaaaa cccattcggt
     4861 gaatatatgg agttttctgc taacctcgtg gacattcaat tagcattact tgaaagccag
     4921 ccaattgcag attattctca aaaaataacc gcttgtgtag agcgcacgca aggagaaaca
     4981 ccgctaaatg cacagaattt tcagcgtact gatgaatggc ggacactact cttagccatt
     5041 attgagaaat tcaagcctta tgcaaatgat actgttcttg caacaattga agtattggaa
     5101 aaggcagcta agtcagagct agacacactt gctgataatt tgctaaatga acgatacgaa
     5161 cttgtgggcg cagataaagc tgtctttatt tgggctgctc tctcacttta ctgggtacaa
     5221 ttagctcaac aattaccacg taattctcgt gcagaaatag gccataaaca tttatgtccg
     5281 gtatgtaact cagcacctgt aagcagtgtg attcatttcg gtgaagctca agggttacgt
     5341 tatctacact gttctttatg tgaaagtgaa tggcatgtag tacgtacaaa gtgtacaaac
     5401 tgtgatgaaa ccggcaaact ggattattgg agcttagata cagtagaagc agcagttaaa
     5461 gctgaaagtt gtggcgactg ccattcctac ttaaaagtac tctatcaaga taaagacgtg
     5521 aatgtggaac ctgttgctga tgatttagca actctattct tagattccga gatggaacaa
     5581 aaaggtcttt caagaagtgg gataaatcca tttttatttc aagtagagta actcatttac
     5641 aacaaaaacg gagcataacg ctccgttttt tattacattt aactcataca ctatactttt
     5701 ttaatcagct atttttttaa cttcacagcg gttagcaata atctcccgat ctgacataaa
     5761 tgcgtatcgg cattgagatt taaaatattg aatcacagaa tcatcaagag gtcgttgtgc
     5821 tccaacacgt aattcctcca tagaaaaatt actaacctct tcatctttct ctttattttt
     5881 caatacctta cgttcagata ttctaaactt aggcttgtct tgctgttttt ttactccgtt
     5941 taatttttct ttattactag gaataggatt acttgcataa ctaatactat tcatcgtaag
     6001 aaaaagagaa ataacaaaaa agctaaaagc gtttttcata gcaaacccat aaataaaatg
     6061 tagcataatc ataaaattac gtaacatttt attacattta gcgcatggtt acaaattctt
     6121 cagatcctgt cgggtgaata gccactgtgt tgtcaaaatc agctttcgtt gcgcccattt
     6181 taattgcaac agcaaaacct tgaatcattt catcaacacc aaaaccaata ccatgtaacc
     6241 caaccacttt ttccccttcc ccaacacaaa ctaatttcat tcggcaaggt tgacgatgtt
     6301 gtgtaaccgc agtatacatt gcagtaaatg aagatttata cactttcaca ttttctgccc
     6361 catattgctc aatcgctttt ggctcactta aaccaacagt acctattggt gggtggctaa
     6421 aaacgactgt cggtactaag ctataatcca aatgttcatt tggtttatta ttgaacaacc
     6481 gttccgatag cctgcgacca gctgcaactg caacaggagt taattcaata ccaccttcaa
     6541 taatatcacc aacagcatag atatttggca cattagtatt ttggaattta tccactttga
     6601 taaaaccacg ctcgttggtt tcaacaccag cagcctctaa attaatctta tctgtcgctg
     6661 gctcacgacc aatagcccac accaagcttt caacagaggt ttcacgacca tcttgcaatt
     6721 ttaatgtcaa tgaaccatct gcatttttaa ctacttcttg aggagtcgct tgtgtatgta
     6781 attcgatccc atcttgagct aatacttcaa gcaatgtatc cactattaat gggtcttgat
     6841 tacgcattgg agcatgttga cgaacaaaaa gatgggtatt tactcctaaa ctattaaata
     6901 ctccagctaa ttcaactgca atataccctg cccccacaat tgctacggac ttcggtaaag
     6961 catctagtgc aaatacacca tcagaagtga taccgtattc agcccctttc acattgggta
     7021 cagttggacg accacctgtt gcaatcagaa tatggtctgc tgtgacctcc tcaacggaac
     7081 catcagcata actcacttct aatgttttag catctttaaa gcgagcaaaa ccatttaaaa
     7141 catcaacatt attttttgcc agcacattac catatgaggt atgaatgcgc ccaatatagg
     7201 cctggcgact ctcaactaat ttggcataat caaaattatt taccgtaatg tcaaaaccat
     7261 aatcaggggc gtaatggtta atcgcttctg caacttgtgc accatagaac atcacttttt
     7321 tgggtacaca tcccacgttc acacaagtgc cacctaaatg ttttgcttca ataatggcac
     7381 atttttgccc atagcttgct gctcgattaa ttgaagcaat accaccacta ccaccgccga
     7441 tagcaatata atcataatgt ttagccataa gctattcctc gatctataaa aacaaaagca
     7501 acttattcgt taagcgcttt atcaaattaa atttgcatag aagactaatg tttcatatgc
     7561 cctgaattca acattttatc aatatacgcc atcgctaatg ctgaaacaat aaaggctaag
     7621 tgaataacta cttgccacat catttgcttt tcatcaagat ttgaagcatt gataaatgtt
     7681 tgtaataaat gaatagaaga aatactgata attgccattg aaagttttac tttcaaaata
     7741 gtcgcattaa cgtgatccaa ccattctggc tgatcagggt gatcatctac ttttaatcta
     7801 gagacaaaag tttcatatcc tccaacaata accataacca aaagatttgc aatcatcacc
     7861 acatctatta aatttaatac cgctaacata acagtatttg aatccatttc atttaaattg
     7921 ataactagat gatacaatga tttaataaac ttatacgcat atatcccctg tacaacaatc
     7981 aaccctaaat aaataggtaa ttgtaaccaa cgacttgcga aaataatttt acctaaaata
     8041 tttgccctag tatttaattc c
//
LOCUS       DANMBQ010000110         8052 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.110, whole genome shotgun sequence.
ACCESSION   DANMBQ010000110 DANMBQ010000000
VERSION     DANMBQ010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8052
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.110"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(53..1093)
                     /locus_tag="PXE92_002038"
     CDS             complement(53..1093)
                     /locus_tag="PXE92_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5761251.1"
                     /translation="MQTTLSPQQIAKKHRTIEKKRSFLLLFFLLICLLSLIFDIMTGP
                     SLLPFNEVWKALFQLGEIEETTKVIVYELRLPMAIMALVVGAALGVGGAEIQTLLNNP
                     MASPYTLGLAAAAGFGASIVIAFGGFGLPTEISVPVGAFVMTLFSSAILFAFSSLGRF
                     SSAILVLVGIALLFLFQSLLSLVQFISAPEVSQQILFWLFGNLTKATWQTISIAFGVT
                     TVCILLLFKDAWKLTALRLGEARALSLGINLTWLRMKTLLIVSVMTATCISFVGIIGF
                     IGLVAPHIARMLLGEDQRFFLPGSMLVGAAFLSMSSVLSKSLVPGALFPVGIITALVG
                     VQFFFWIVLAKR"
     gene            complement(1182..1772)
                     /locus_tag="PXE92_002039"
     CDS             complement(1182..1772)
                     /locus_tag="PXE92_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein phosphodiesterase"
                     /protein_id="HDL5761252.1"
                     /translation="MNFLTHSLISLEIDTQTKQQTLYGNFAGDFYKGLIPHLNLADNL
                     KSGVVLHRSIDKISDRPDSLTTQLLQGTFGRYKGIVSDIMIDHFLAKHFQRLFAKDLN
                     EVQAQIFQQIEQQRTIFPEQFVPMFNWLQSRKALTHYADLDFLEQVFLGMSSRVKKGE
                     ILRNAVTEIWQNYTLLEEAAIQEFFTVKDRATRELS"
     gene            complement(1773..3146)
                     /gene="modF"
                     /locus_tag="PXE92_002040"
     CDS             complement(1773..3146)
                     /gene="modF"
                     /locus_tag="PXE92_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HDL5761253.1"
                     /translation="MVVDGNGSGKTTFSLALQGKISLYSGDYGNSFQHIQLLSFEQQQ
                     KMLEQIFKDRNNDSVSPDDFGLTARQVILNGSPKEALCEEYAHKLHIQHLLERPFMHL
                     STGESRKVLFCQMLVSEPDLFILDEPFEGLDQQSVQYWQQLIAELQSKMALVLIVNRF
                     NDIPDAANHIELLDNLSLILQGERAEIEQQAVYSQLKFAEENVNVPLPDSAAPLLSLP
                     ENINPFELENVNIQYGEKKILDNLSWTVQPKQHWWIKGPNGAGKSTLLSIITGDHPQS
                     YANKVRLFGKQRGSGETIWDIKKNIGYVSSQLHMDYRVNCSAMEVILSGFFDSIGVYQ
                     QVPNALQLKAMEWLERLNLSNVAKKPFRSLSWGQQRLLLITRAMVKHPSILILDEPLQ
                     GLDGINRKLVKQFIEQLVTNSQTQLLFVSHQDSDAPNCITHLFEFVPKGETNEFGFEY
                     HQTALGA"
     gene            complement(3264..4217)
                     /gene="fmt"
                     /locus_tag="PXE92_002041"
     CDS             complement(3264..4217)
                     /gene="fmt"
                     /locus_tag="PXE92_002041"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDL5761254.1"
                     /translation="MSKLNIIFAGTPDFAAQHLQALLDSEHNVIAVYTQPDKPAGRGK
                     KLQASPVKQLAEAHNIPVYQPKSLRKEEAQAELKALNADVMVVVAYGLILPEAVLNAP
                     KYGCLNVHGSLLPRWRGAAPIQRSIWAGDTETGVTIMLMDVGLDTGDMLHKVTTPIEP
                     NETSASLYAKLAELAPLALLEVLNGLANHTFKAEKQDEALSNYAEKLSKEEAKLDWQL
                     PAVQLERNIRAFNPWPFSFLTLTVDGVEQSIKIHQATVLPHQEKAAGTVINVDKTGIQ
                     IATQQGVLNITQLQPAGKKPMSVQDFLNGRADWFVSGTQLS"
     gene            4332..4943
                     /locus_tag="PXE92_002042"
     CDS             4332..4943
                     /locus_tag="PXE92_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDL5761255.1"
                     /translation="MEFFIPKADTIFEEEIKKSRFITYLRHTEGMEQAKAFWQELKIQ
                     HPHARHWCWATVAGLPNDSQQYGFSDDGEPSGTAGKPMLNYLLGSGLGEITAVVVRYY
                     GGIQLGTGGLVKAYGNGVQQALLQLERIRKVLRKNYRLQCEYEQFNTISHLISEKDIV
                     IVEQLFSDKVDLLLAFNPSEVEAFADELTQRFSGKLALIKEEI"
     gene            4947..6431
                     /locus_tag="PXE92_002043"
     CDS             4947..6431
                     /locus_tag="PXE92_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter"
                     /protein_id="HDL5761256.1"
                     /translation="MQFFSIIRIVGILVMCFSFTMLVPATVALIYGDGGGRAFLEAFA
                     LNFMVGTLLWWLCRDNKNELRSREGFLIVVLFWVVLGLLGAVPFIILENPDLNVAESI
                     FESFSGLTTTGATVITGLDSLPKAILFYRQFLQWLGGMGIIVLAVAIIPLLGIGGMQL
                     YRAEMPGPLKEQKMRPRIAETAKALWLIYLSLTILCAVAFWLAGMTVFDAISHSFSTV
                     SIGGFSTHDASIGYFNNAAISYITVFFLLLSACNFALHFAVIDRIRDAQSRKKGGILS
                     RLYWGDYEFRFFLMVQLGLFLVCTLVLVGYGYFDNTSVTIEQALFQSVSISTTAGFTT
                     NDFSQWSSFLPTLLVLSSFIGGCAGSTGGGLKVIRVLLLYLQSKREIHRYIHPNVIQP
                     IKLGNHVLSERVVDGIWAFFSAYFFVFVICWLATIACGMETFDALNAVIASLNNLGPA
                     LGSVSSNFTQVPDSAKLVLTFAMVCGRLEVFTLLVILSPVFWKD"
     gene            6432..6959
                     /gene="hemG"
                     /locus_tag="PXE92_002044"
     CDS             6432..6959
                     /gene="hemG"
                     /locus_tag="PXE92_002044"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HDL5761257.1"
                     /translation="MKTLILYFTTDGQTKKIAERLADVITHEVELISLKDQAVDFAEK
                     IANADQIVIGASIRYGHFNPLVYQFVEQHYPALNAKKTAFYGVNLTARKDNRNTPETN
                     TYVRKFLAKVKWKPTHIEVIAGALLYLRYKPFDRLMIRFIMKITKGETDTSKEYEYTD
                     WQQVENFGKLLANQL"
     gene            7091..7486
                     /gene="mscL"
                     /locus_tag="PXE92_002045"
     CDS             7091..7486
                     /gene="mscL"
                     /locus_tag="PXE92_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HDL5761258.1"
                     /translation="MSILKEFREFAVKGNVVDMAVGVIIGGAFGKIVSSLVSDVVMPP
                     IGWLIGGVDFKDLAIEIAPAKEGAEAVMLKYGAFIQNVFDFLIIALAVFGMVKVINSL
                     KKAPVVEEAPAEPTAEEKLLTEIRDLLKK"
     gene            complement(7599..7862)
                     /gene="rpsT"
                     /locus_tag="PXE92_002046"
     CDS             complement(7599..7862)
                     /gene="rpsT"
                     /locus_tag="PXE92_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDL5761259.1"
                     /translation="MANIKSAKKRAVQSEKRRQHNASQRSMMRTFIKKVYAAVAAGDK
                     AAAQTAFVEMQKVVDRMASKNLIHANKAANHKSKLAAQIKKLA"
BASE COUNT         2228 a         1607 c         1800 g         2417 t
ORIGIN      
        1 ctaagtttcc acgcttaata gttacatcgt ttaagttgag catagaaaat ccttatcgtt
       61 tcgccaatac aatccagaaa aagaactgca caccgactaa tgccgtaata ataccgaccg
      121 gaaataatgc gcccggcaca aggctttttg atagcacgga tgacatcgat aaaaatgccg
      181 cacccactaa cattgaaccg ggcaggaaaa agcgttggtc ttcgcctagc aacattcggg
      241 caatatgcgg ggcaactaag ccaataaagc cgataatgcc tacaaagcta atgcaggtgg
      301 ccgtcattac agacacaatc agcaatgttt tcattcgtaa ccaagttaag ttaatgccta
      361 agctcaatgc tcgagcttcg cccaaacgca aggcagttaa tttccacgca tctttgaata
      421 ataataaaat acagactgta gttacgccaa aggcaattga gatagtctgc caagtagctt
      481 tagttaaatt accgaatagc caaaacagaa tttgttggga tacctcaggt gcagaaataa
      541 attgcaccaa tgacagtaaa gactgaaata aaaacaataa ggcaattcct accagcacta
      601 atattgccga gctaaaacgt cctaaagagg aaaaggcaaa taaaatggcg gaagaaaata
      661 gtgtcatcac aaaagccccg acaggtacag aaatttcggt gggtaaacca aatccaccaa
      721 aggcaatcac aatcgaagca ccaaagccgg ctgcagctgc taaacccaat gtataagggc
      781 ttgccattgg attattaagc aaagtttgaa tttcagctcc gccaacacca agtgctgctc
      841 caaccaccaa tgccattatt gccattggta agcgtagctc atagacaatc actttggtgg
      901 tttcttcaat ttcgcctaat tggaataagg ctttccaaac ttcattaaac ggaagcaggg
      961 aagggcctgt cataatatcg aaaatgaggc tgagtaaaca aatgagtaag aaaaagagta
     1021 ataaaaaact gcgtttcttt tcaatagttc ggtgcttttt agctatttgt tggggagaga
     1081 gcgttgtttg cataaaaatg taatgtttga gaattattat cagacaggat aagagaaaag
     1141 atcgataaat tcaagaatat ccaagatacc gactaaagta ttcaactaag ttctcgagta
     1201 gccctgtctt ttacagtaaa aaactcctga atagcggctt cttctaaaag agtataattc
     1261 tgccaaattt cggttacagc atttcttaaa atctcacctt tcttaactct tgatgacatt
     1321 cccaagaata cctgttctaa gaaatctaaa tcggcataat gagttaatgc ttttcgtgac
     1381 tgtaaccagt taaacatcgg cacaaattgt tcaggaaaaa tcgtgcgttg ttgttcgatt
     1441 tgctgaaaga tctgtgcttg tacctcattt aaatctttag caaataaccg ttggaaatgt
     1501 ttagcgagaa aatggtcgat cataatatcc gacacaatgc ctttataacg cccgaatgtg
     1561 ccttggagta attgggttgt gaggctgtcc ggtcggtccg aaatcttatc aatcgagcgg
     1621 tgtaacacca caccgctttt taagttatcc gctaaattga gatgcggaat taaaccttta
     1681 tagaaatcac cggcaaagtt gccatatagg gtctgttgct tggtttgggt gtcaatttca
     1741 agtgaaatca gcgaatgggt aagaaaattc atttatgctc caagtgcagt ttggtgatac
     1801 tcaaacccaa actcgttggt ttcgcctttc ggtacaaact caaataaatg cgtaatgcaa
     1861 tttggagcat cgctgtcttg gtgcgaaaca aaaagtagtt gcgtttggct gttagtcact
     1921 aattgttcaa tgaactgttt gactaatttg cggttaatgc cgtctaaacc ttgtaacggt
     1981 tcgtctagaa tcagaattga tgggtgtttc accattgctc gggtaatcaa aagtaagcgt
     2041 tgttgccccc acgagagaga gcgaaacggc tttttggcaa cattgcttaa attgaggcgt
     2101 tccaaccatt ccattgcttt taattgcaag gcattcggca cttgttgata cacgccgatg
     2161 ctgtcaaaaa agccagaaag aatgacctcc attgcggagc aatttacccg ataatccata
     2221 tgcaactggc tgctgacata gccgatattt ttcttaatat cccaaatggt ttcgccactt
     2281 ccccgttgtt tgccaaatag tcggacttta ttggcataag attgtgggtg atcgccggtg
     2341 ataatcgaaa gcaaggtcga tttcccagct ccattcgggc ctttaatcca ccagtgttgt
     2401 ttaggctgaa ccgtccaact taggttatct aaaatcttct tctccccata ttgaatattc
     2461 acattttcca actcaaacgg attgatgttt tccggcaggc tgagtagcgg agctgcacta
     2521 tcaggcagtg gcacattgac attctcttct gcaaatttta gctgagaata gaccgcttgt
     2581 tgttcaattt ctgctcgctc tccttgcaga attaatgata aattatctaa taactcaata
     2641 tgattggcag catcaggaat atcgttaaaa cgatttacaa tcagcactaa cgccattttg
     2701 ctttgtagtt cggcaatcag ttgttgccaa tattgcaccg actgctgatc cagcccttca
     2761 aacggttcgt ctaaaatgaa taaatccggc tcgctcacta acatttggca aaatagcact
     2821 ttgcggcttt caccggtgga aaggtgcata aacgggcgtt caagcagatg ttgaatatgc
     2881 aatttgtggg catattcctc acataacgcc tcttttggac tgccatttaa aattacttgt
     2941 cgtgcggtta agccgaaatc atcgggcgag acactatcgt tgttccgatc tttgaaaatc
     3001 tgctccaaca ttttttgttg ttgctcgaaa gagaggagct gaatatgttg gaacgaatta
     3061 ccatagtcgc cggaatagag cgagatttta ccctgtaaag cgagtgaaaa agttgttttg
     3121 cctgaaccgt ttccgtctac gaccacctaa aagtcattgg gttggatctg taaggcgtca
     3181 atcgtgagtt tatgttgttt aaccagtgaa aatcgggcat tggttattgt aagtgaaggc
     3241 tgtgtttgca tatatttccc gttttaactt agttgtgtcc cgctgacgaa ccaatccgct
     3301 cgaccgttta agaaatcttg caccgacatt ggttttttac ccgccggttg aagttgggta
     3361 atattcagca cgccctgttg ggtggcaatt tgaatcccgg ttttatccac attaattacc
     3421 gtgccggctg ctttttcttg gtgaggtaac accgtggctt ggtgaatttt gatactttgc
     3481 tcaacgccat caacggttaa ggttaaaaaa ctaaacggcc aagggttaaa agctcggata
     3541 ttgcgttcca gttgaactgc tgggagttgc caatccaatt tagcttcttc tttggaaagt
     3601 ttctcggcgt aattggacag tgcttcatct tgtttttccg ctttgaatgt gtggttggct
     3661 aaaccgttta acacctcaag caatgccaga ggggcaagtt ctgccagttt ggcatacaag
     3721 gaggcggagg tttcattcgg ctcaatcggg gttgtgactt tatgtaacat atcaccggtg
     3781 tctaagccaa cgtccattag cataatggtt acgccggttt ctgtatcacc tgcccaaatc
     3841 gaacgctgaa tcggagctgc tccacgccag cgaggtagta gcgaaccgtg tacgtttagg
     3901 caaccatatt taggagcatt caatactgct tcaggtagaa ttaagccgta agctaccacc
     3961 accatcacat cggcatttag ggctttcagt tcagcttgag cctcttcctt acgcagggat
     4021 ttgggttggt aaacaggaat gttgtgagct tcggccagct gttttaccgg gctggcttgc
     4081 agttttttgc ctcgcccggc aggtttatcc ggctgagtat aaaccgcaat cacgttatgc
     4141 tcggaatcta ataaggcttg taaatgttga gcggcaaaat caggcgtgcc ggcaaaaata
     4201 atattgagtt ttgacatatt ttttattcgt tcaagttatc aatgaaagac ttattaaacc
     4261 attaaacagc acaaataaaa agtggcttga atatggtatc attgccacat tcaagataag
     4321 agaatcaaac aatggaattt tttatcccca aagcggatac aatttttgaa gaagagatta
     4381 aaaaaagccg atttatcacc taccttcgcc atactgaggg tatggagcag gccaaggcat
     4441 tttggcagga gctgaaaatt cagcatccgc acgcacgcca ttggtgttgg gcaacggtgg
     4501 caggcttgcc gaatgattcg caacaatacg gcttttcgga tgatggagaa ccgtctggta
     4561 cagcaggtaa gccaatgctc aattatttgc ttgggtcagg cttgggggaa attacagcgg
     4621 tggtggttcg ctactacggt ggtatccagc ttggcaccgg cggcttggtg aaagcctatg
     4681 gcaatggggt gcaacaggcg ttattgcagt tggagcggat tcgcaaagtt ttgcgaaaaa
     4741 actaccgctt gcaatgtgaa tatgagcagt ttaataccat ttctcatctc attagcgaga
     4801 aagatattgt gattgtcgag caacttttta gcgataaagt ggatttgttg ctggcattta
     4861 acccgagcga ggttgaggcc tttgcagatg aattaaccca acgcttttcg ggcaagctcg
     4921 cattaataaa agaagaaatc tagtctatgc aatttttttc cattattcgt attgttggca
     4981 ttttggtgat gtgtttttca ttcacaatgc ttgtgccggc aacggtcgcc ctaatttatg
     5041 gcgatggcgg tgggcgggcg tttttagaag ccttcgctct gaattttatg gtcggtacgc
     5101 tgctttggtg gctgtgccgt gacaacaaaa acgagctacg ttcccgtgag ggctttttga
     5161 ttgtagtact gttttgggtg gtgctgggtt tgctcggggc tgtgcctttt attattttgg
     5221 aaaaccccga tttaaacgtg gcggaatcca tttttgaatc cttttccggc ttaactacaa
     5281 cgggtgcaac cgtcatcacc ggcttagata gcttgcccaa agcgatttta ttctaccgcc
     5341 aatttttgca atggctaggg ggaatgggga tcattgtgtt agcggttgcg attattccgc
     5401 tgttaggcat tggtggaatg caactttatc gtgcggaaat gcccggaccg ctcaaagagc
     5461 agaaaatgcg acctcgcatt gcggaaacgg caaaagcgtt gtggctgatt tatctcagcc
     5521 tgacgattct gtgtgcggtc gcattttggc tcgccggaat gacggtgttt gatgccattt
     5581 cgcatagctt ttccacggtt tcgattggcg gattttctac ccacgatgcc agcatcggct
     5641 attttaataa tgcggcaatt agctatatta ccgtgttttt cctgctactt tctgcctgca
     5701 actttgcatt gcattttgcg gtgattgatc gcatacgaga tgcacaatca cgcaaaaaag
     5761 ggggtatttt aagccgcttg tattggggcg attacgagtt tcgttttttc ttgatggtgc
     5821 agttagggct tttcttggtt tgtaccttgg tgttagtggg ttacggttat ttcgataata
     5881 cctctgttac gattgagcaa gcgttgtttc aatcggtgtc catttccacc acggccggct
     5941 ttactaccaa tgattttagc caatggagtt cgtttttacc cacgctgttg gtgctgtctt
     6001 catttatcgg tggttgtgcc ggctcaaccg gtggcggctt gaaagtgatt cgggtgttgc
     6061 tgctttattt acaaagtaaa cgtgaaatcc accgctacat tcaccccaat gtgattcaac
     6121 cgattaaatt aggcaaccac gttttatcgg aacgggtggt tgatggtatt tgggcgtttt
     6181 tctcggcgta ctttttcgtg ttcgtgatct gctggcttgc taccatcgct tgtggaatgg
     6241 aaacctttga tgctctaaat gcggtaattg cctcactaaa taatctaggt cctgcattag
     6301 ggagcgtgag cagcaatttc acccaagtgc cggacagtgc caagttagtg ctgacttttg
     6361 caatggtatg cggacgtctg gaagtgttta ccttgctggt gattttaagc cctgtttttt
     6421 ggaaagatta aatgaaaacc ttaattctct attttacgac cgatggtcaa accaaaaaaa
     6481 ttgccgaacg attggcggac gtgattactc acgaagtcga gctgatttcg ctaaaagatc
     6541 aagcggtcga ttttgccgaa aaaattgcaa atgccgacca aattgtcatc ggtgcttcaa
     6601 ttcgctatgg gcattttaac ccgttggttt atcagtttgt ggaacagcat tatccggcat
     6661 taaacgccaa gaaaactgcc ttttacggtg tgaatttgac cgctcgcaaa gataatcgaa
     6721 acacgcctga aaccaatact tatgtgcgta aatttttagc taaagtgaaa tggaaaccaa
     6781 cccacattga ggtaattgct ggggcattac tttacctacg ctataagcca ttcgaccgat
     6841 tgatgattcg ctttattatg aaaattacca aaggcgaaac cgatacctcc aaagaatatg
     6901 agtacaccga ttggcagcag gtggagaatt ttggcaaatt attagccaat cagttataat
     6961 caaactgatc taaatcaaaa aaatgtaaat ttatttaaat gttgtagaaa ttttaaagat
     7021 tttgattata atcgccagcc cacgttcttg cgaagaccgt gtttaatcat tgaatgaaag
     7081 gaaagccccc ttgagtattt taaaagagtt ccgtgaattt gcggtaaaag gtaatgttgt
     7141 tgatatggct gtcggtgtga ttatcggcgg tgcattcggt aaaattgttt cttcattagt
     7201 tagcgatgtt gtaatgccac ctatcggttg gttaatcggt ggcgtggatt tcaaagattt
     7261 agccattgaa atcgccccgg caaaagaagg tgcggaagca gtgatgttaa aatacggtgc
     7321 atttatccaa aacgtatttg atttcttaat tatcgcactt gcggtattcg gtatggtgaa
     7381 agtgattaac tcactgaaaa aagctccagt tgtagaagaa gctcctgcag agccaacagc
     7441 ggaagagaaa ttattaactg aaatccgtga tttattgaaa aaataattaa ctgattttga
     7501 aacaagggct attttagaat atctagaata gccctttgtg ttatggttaa aaagaaaaaa
     7561 accaacataa agtcggtttt tttcatatct gttcgatatt acgctaattt tttgatttgc
     7621 gctgctaatt tagatttgtg gttagccgct ttgttagcgt ggattaagtt tttagatgcc
     7681 atacggtcta caactttttg catttcaacg aaagccgttt gagctgctgc tttatcgcct
     7741 gctgctactg ctgcatatac ttttttgatg aatgtacgca tcattgagcg ttggcttgcg
     7801 ttgtgttggc ggcgtttttc agattgaacc gcacgttttt ttgctgactt gatattagcc
     7861 aaggtcaaac tcctaaaata tctgtgtaaa aattagatat aaacaaaatc gttgtttata
     7921 ttgcctatcg atagttttta attcattttc aacgagacac gtgcttgaaa ataacaccgt
     7981 ttttctgata gaaaacgata gggcgagatt ttaacagttt ttttctgatt ttcctataac
     8041 aaactgctaa aa
//
LOCUS       DANMBQ010000111         7865 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.111, whole genome shotgun sequence.
ACCESSION   DANMBQ010000111 DANMBQ010000000
VERSION     DANMBQ010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7865
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.111"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(149..829)
                     /gene="can"
                     /locus_tag="PXE92_002047"
     CDS             complement(149..829)
                     /gene="can"
                     /locus_tag="PXE92_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HDL5761260.1"
                     /translation="MEKIERLFANNHAWATKMKDEQSDYFKELAEHQKPTYLWIGCSD
                     SRVPAEKLTGLGPGELFVHRNVANMVIHTDLNCLSVVQYAVDVLEIEHIIICGHTNCG
                     GINAAIAQKELGLINNWLLHIRDIWFKHSHLLGKLPYEERSNVLTRLNVAEQVYNLGQ
                     SSIIKTAWEQGKSLSLHGWVYDVTDGFLIDQGVMATSRETLEITYRNAIAKITTEANE
                     KIVLNDEN"
     gene            complement(943..3078)
                     /gene="pta"
                     /locus_tag="PXE92_002048"
     CDS             complement(943..3078)
                     /gene="pta"
                     /locus_tag="PXE92_002048"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005542370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDL5761261.1"
                     /translation="MSRTIILIPISTGVGLTSVSLGLVHALEQKGSKVGFLKPISQPI
                     SGEDTLDRSTTIIRAEQTTEVGEPFMLSEAETLIGQNQTDVLLEKVVERHQKLSKNNE
                     IVIVEGLIPTRKNSYANSINYEMAQALDAEIVLVAAPASDTPAQLKERVEAAASQFGG
                     RNNPNLLGVIINKFNAPVDDSGRTRPDLTEIFDSFQHSNNNVSEVEHLFAKSPIKLLG
                     CISWKAELIATRAIDVAKHLGASIINEGEIKARRIRGVTFCARNLPNMVDHFKAGSLL
                     VTSADRPEVLVAASLAVMNGIEIGAILLTGGYKIDSSIAKLCQQAFETGVPVFRIEGN
                     TWQTALSLQSFSLEVPVDDKERIAAIKEYMASKFNVGFIDEVSKAATRARRLSPAAFR
                     YQLTEYARQAKKRIVLPEGDEPRTVKAAALCAERGIAECVLLANPTDVQRVAEAQGVV
                     LGKGVTIIDPASIRENYVDRLVELRKAKGMTEVVAREQLLDTVVLGTMMLEANEVDGL
                     VSGAVHTTANTIRPPMQIIKTAPGSSIVSSIFFMLLPDQVLVYGDCAVNPDPTAEQLA
                     EIAIQSAESAKAFGIDPRVAMISYSTGTSGSGADVEKVKEATRIAQEKRPDLIIDGPL
                     QYDAAIMEDVARSKAPNSPVAGKATVFVFPDLNTGNTTYKAVQRSADLVSIGPMLQGM
                     RKPVNDLSRGALVDDIVYTIALTAIQATQ"
     gene            complement(3131..4339)
                     /locus_tag="PXE92_002049"
     CDS             complement(3131..4339)
                     /locus_tag="PXE92_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDL5761262.1"
                     /translation="MSKNLILILNCGSSSLKFAILDPKTGDEKLSGLAEAFHLEDARI
                     KWKLNGEKGNADLGAGAAHSEALTFIAEKLLSDELKAGIGAIGHRIVHGGEKFTSSVV
                     ITDEVIKGIEDATQFAPLHNPAHLIGIKEAFRIFPELKDKNVAVFDTAFHQTMPEHAF
                     LYALPYTFYKENGIRRYGFHGTSHFYITSQVAELAGKSVEQTNAIICHLGNGGSVSVV
                     RNGKCIDTSMGLTPLEGLVMGTRSGDLDPAIISFLYNNLGMSMDEIDTTLVKKSGLLG
                     LTGVTSDCRYAEDNYNDVSKPEAKRALDVYSYRLAKYIGSYMAILGDDHLDAIAFTGG
                     IGENSGLVRELTLNHLKLFGIKLDQERNLAARFGKDGVITADESTFKAVVIPTNEELV
                     IAQDTAKLAL"
     gene            4580..6556
                     /gene="cpdB"
                     /locus_tag="PXE92_002050"
     CDS             4580..6556
                     /gene="cpdB"
                     /locus_tag="PXE92_002050"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HDL5761263.1"
                     /translation="MLNRRKFIQLGATAMLVLGTQPSAFAQTAKNKAGLRVIATTDIH
                     GFLTDFDYYKDAPTEKFGFTRTASLIKQARAEVKNSVLVDNGDLIQGNPISDYQSTKG
                     AKEGKPEPSIMALNAMQYEVGTLGNHEFNYGLSYLDNAIKQAKFPIVNANIVKPGTDE
                     PFFTPYVIQQKEIVDEKGNKHTIKIGYIGFVPPQVMIWDKANLEGKVEARDIVKTAQK
                     YVPIVKKEGADIVVALAHTGPSDEPYKEGAENCAFYLADVKGIDAVIFGHSHRLFPNK
                     EFANSPNADIAKGTMKGVPESMAGYWGNNISVIDLSLAENDGKWGVVDGRAELRPIYN
                     TEEKKATVENHPEIVALLKETHEATRQFVSQPIGKATDNMYSYLALVQDDPTIQIVNQ
                     AQKAYVENVVKGLPELAGLPILSAGAPFKAGGRKNDPTGYTEVDKGELTFRNAADLYL
                     YPNTLVVVKATGAELKEWLECSAGMFKQIDVASDKPQYLLDWTGFRTYNYDVIDGVSY
                     QFDITQPARYDGECKLINPNSHRVVNLTFDGKPVDPKQEFLIATNNYRAYGAKFPGTG
                     DKHIVFAAPDENRQVLANYITTESKAHGQVSPKADNNWRIAPISSNAKLDIRFETSPT
                     DKAKAFIKENAQYPMEYIENDETGFAVYRIDLTK"
     gene            complement(6629..>7865)
                     /locus_tag="PXE92_002051"
     CDS             complement(6629..>7865)
                     /locus_tag="PXE92_002051"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDL5761264.1"
                     /translation="HDVVSEYTQFISDTLNIEDSGEHIAQLHQLGYLPIRIKAIPEGK
                     SVAVKVPLMTIENTHSSFFWLTNYLETLINVSLWQPITSASIAFAYRKALAEFSEQTC
                     DDNSHLPFQAHDFSMRGMSSLESAESSGAGHLTSFLGTDTIPAISFVTAYYGSQHLIG
                     TSIPASEHSVMSSHGVDELPTFRYLMAKYPNNMLSIVADTTDFWHNITVNLPLLKQEI
                     LARPESAKLVIRPDSGDFFTIICGNNSSPVEHERKGLIECLWDIFGGSINQKGYKVLN
                     PHIGAIYGDGVTYDKMIRILEGLTAKGFASSNIVFGVGAQTYQRNTRDTLGFAIKATS
                     ITINGVEKAIFKAPKTDNGLKKSQKGRVKVISYDHYVDELTALDDFSDDLLEVVFENG
                     KLVKSTNFDEIRQNIAQQF"
BASE COUNT         2476 a         1539 c         1506 g         2344 t
ORIGIN      
        1 tttgattttt aaatcaatat tttacacttt tgctgaaatt taaaactttt ttgacgataa
       61 caggaatcag gaaaataaaa aaccatcaaa caatggtttt ttataaaaag attgtaaaaa
      121 aatcgataaa tttaaccgct tacaatggct aattttcatc gtttaaaact attttttcgt
      181 ttgcttcggt tgttatttta gctattgcat tacgataggt aatttctaat gtttctcggc
      241 tagtagccat aacaccttgg tcaatcaaga aaccatctgt aacatcgtat acccaaccgt
      301 gtagcgagag ggatttaccc tgttcccaag cggttttaat aatagaggac tgacctaaat
      361 tataaacttg ttctgcaaca tttaatcggg tcaagacatt tgatcgctct tcatagggaa
      421 gtttgcctag taaatggctg tgtttaaacc agatatcacg aatatgtaac aaccagttat
      481 taattaaacc aagttctttt tgtgcaattg ccgcattgat accaccacaa ttagtgtgac
      541 cacagataat aatatgctca atttctaata catctaccgc atattgaaca accgacagac
      601 aattaagatc agtgtgaatc accatatttg ctacatttcg atgaacaaat aattctccgg
      661 ggcctaaccc tgtgagtttt tcagcaggca cacgactatc ggaacagcca atccataaat
      721 aggttggctt ttgatgttcc gctaattctt taaaataatc cgattgttca tctttcatct
      781 tagttgccca ggcgtggtta ttggcaaata agcgttcaat tttttccata aattctcctt
      841 tttaacacta atcttgatta tatgattaaa ttgaaaagtc gggtaggtaa aaaataaaaa
      901 tgcccttagt tttaagggca tttggtttca tttgggaggg aattattgcg ttgcttgaat
      961 cgcagttaac gcaatagtat aaacgatgtc gtcaactaaa gccccacggg acaagtcatt
     1021 tacaggttta cgcatacctt gtaacattgg gccgatagag actaaatctg ccgaacgttg
     1081 taccgcttta taggtggtat taccagtatt taaatccggg aagacaaata cagttgcttt
     1141 acctgctaca ggtgaatttg gtgcttttga gcgggcaaca tcttccataa tcgccgcatc
     1201 atattgtaat gggccatcaa tgattaaatc tggacgtttt tcttgggcaa tacgagttgc
     1261 ttctttcact ttttctacat ccgcacctga acctgatgta ccggtagagt aggagatcat
     1321 tgcaacacga gggtcaatac caaaggcttt ggcagattct gctgattgaa tcgcaatttc
     1381 cgctagctgt tctgcagttg ggtcagggtt taccgcacag tcaccatata ccaatacttg
     1441 atcaggtagt agcataaaga agatagaaga tacaatagag cttcccggtg cagttttaat
     1501 gatctgcatt ggtgggcgaa tagtgttagc ggttgtgtga actgcgcctg agactaaacc
     1561 gtccacttca ttagcttcaa gcatcattgt acccaataca actgtatcta aaagttgctc
     1621 acgagcaaca acttcagtca ttccttttgc tttacgcaat tcaactaagc gatcaacata
     1681 attttcacga atgctcgcag ggtcaataat cgttacgcct ttacctaata ccacgccttg
     1741 tgcttcagca acacgttgta cgtctgttgg gttagctaat aacacacatt ctgcaatgcc
     1801 acgctcagca cataatgcag ccgctttcac agtacgaggc tcatctcctt caggtaaaac
     1861 aatgcgtttt ttcgcttgac gggcatattc ggttaattgg taacggaatg ctgcaggtga
     1921 taaacgtctt gcacgagtag cggctttaga aacctcatca atgaaaccta cattaaattt
     1981 gcttgccata tattctttaa ttgcagcaat acgctcttta tcatctacag gcacttctaa
     2041 gctgaagctt tgtaggctta atgcggtttg ccaagtgtta ccttcaatac ggaatacagg
     2101 cacaccggtt tcaaatgctt gttggcaaag ttttgcaatt gagctatcaa ttttataacc
     2161 accggttagt aaaatagcac caatttcgat gccattcatt accgccaacg atgcagcaac
     2221 taacacttca ggacgatccg cagaggtaac taataaacta ccggctttaa aatgatcgac
     2281 catatttggt aagttacgtg cacagaatgt cacaccgcga atccgacgag cctttatttc
     2341 gccttcatta ataattgaag cgcctaaatg ttttgcaaca tcaattgctc gtgtagcaat
     2401 aagttctgct ttccagctaa tacagcctaa cagcttaatt ggacttttag caaaaagatg
     2461 ctcgacttct gaaacattat tatttgagtg ttgaaatgaa tcaaaaattt cagtcaaatc
     2521 tggacgggtt ctacctgaat catctactgg tgcattgaat ttattgataa taacgcccag
     2581 taaatttggg ttgttacgtc caccaaattg tgaagcggca gcttcaactc gctcttttaa
     2641 ttgagctggt gtatctgagg ccggtgctgc aactaataca atttcagcat caagggcttg
     2701 agccatttca tagttaatgc tgttagcgta tgagttttta cgcgttggaa ttaaaccttc
     2761 aacaatgaca atttcattat tttttgataa tttttggtgg cgttccacca ctttttctaa
     2821 caatacatcc gtttggtttt gaccgattaa tgtttcagct tcgcttaaca taaacggctc
     2881 accaacctct gttgtttgtt ctgctctgat aatcgttgtt gagcggtcta acgtatcttc
     2941 accgctgata ggttgagaaa tcggttttaa aaatcctact ttagaacctt tttgctccaa
     3001 agcatgtact aaacctaagc taacactggt taaaccaaca ccagttgaaa tagggataag
     3061 aatgatcgtt ctagacataa tatttccaaa ttaaaagaaa gtgaaagggc agaatatctg
     3121 ccccctatga ttataatgct aatttagcgg tatcttgtgc aatcacgagt tcttcattag
     3181 ttgggataac aacagcttta aatgttgact cgtccgctgt aatgactcca tctttaccaa
     3241 aacgggcagc aaggttacgc tcttgatcta acttaatgcc aaataatttt aagtgattta
     3301 aggttaattc acgtactaag cctgaatttt caccgatacc acctgtaaat gcgatagcat
     3361 ctaagtggtc atcgcctaaa attgccatat atgaaccaat atatttagct aaacgatagc
     3421 tatatacatc taaagcacgt tttgcttccg gttttgatac gtcattgtaa ttatcttccg
     3481 cataacgaca gtcactagtt acgccagtta aacctaaaag accagatttt tttactagag
     3541 tagtatcaat ttcgtccatt gacataccta agttattgta taagaaagag ataatcgcag
     3601 ggtctaagtc accagagcga gtacccatta ctaaaccttc taatggagtt aaacccattg
     3661 aggtatcaat acatttacca ttgcgtacaa cagaaacaga accaccgtta cctaagtggc
     3721 aaataatggc attggtttgc tcaacagact tacctgctaa ttctgcaact tgtgaggtga
     3781 tatagaagtg gcttgtgcca tggaaaccgt agcgacgaat accattttct ttatagaatg
     3841 tatatggaag tgcatataag aatgcgtgtt ccggcattgt ctgatggaat gcagtgtcaa
     3901 atacagctac gtttttgtct tttaattcag ggaaaatgcg gaatgcttct ttaataccaa
     3961 ttaaatgcgc agggttgtgt aatggtgcaa attgcgttgc atcttcaata cctttaatca
     4021 cttcatcggt aattacaact gatgaggtga atttttcacc gccatgaaca atacgatgac
     4081 caatcgcgcc gatacctgct tttaattcgt cagataacaa tttttcagca ataaaggtaa
     4141 gtgcttcact atgtgcggca cctgcaccta aatcagcatt acctttctcc ccgtttaact
     4201 tccacttgat acgtgcatct tctaaatgaa aagcttcagc aagtccagat aatttttcat
     4261 cacctgtttt aggatctaaa atagcaaatt taagagatga actaccgcag ttaaggatta
     4321 agattaagtt tttagacatg gtcaaattac cttattttat gaaatgagtt tgaagaaaat
     4381 actattttta ttggtgtatt taaggtgtaa aggatacacc tttcagatct taaaataaat
     4441 gcttgaactc aaagaaagat aaaaatgtgt ttaaaatttg atataacaag ctataaatgt
     4501 gaaaaaatat ggcgaacaag cggttatttt tctaaaatat tttacaattt accctttcat
     4561 ttcattaagg agatatttta tgttaaatag aagaaaattt atccagcttg gtgcaactgc
     4621 aatgcttgta ttggggacac aaccgtctgc atttgcacaa acagccaaaa ataaagctgg
     4681 cttgcgtgtc atcgccacta cggatattca cggtttctta actgattttg attattacaa
     4741 agatgctcca acagaaaagt ttggttttac ccgtacggca agcctaatta aacaagctag
     4801 agcagaagtt aaaaacagtg tgttagtcga taatggtgac ttaattcaag gtaatcctat
     4861 ttctgactac cagtcaacca aaggtgcaaa agagggcaaa cctgaacctt cgattatggc
     4921 attaaatgcg atgcaatatg aagtcggaac gctgggaaat catgaattta actacggttt
     4981 aagctattta gataatgcta ttaagcaagc aaaattccct attgtcaatg caaacattgt
     5041 gaagccgggg acagatgaac cattctttac accttatgtt attcaacaaa aagaaattgt
     5101 agatgaaaaa gggaataagc ataccattaa gattggttat atcggttttg taccaccaca
     5161 agtgatgatt tgggataaag ctaatcttga aggaaaagtt gaagctcgag atattgtgaa
     5221 gaccgcacaa aaatatgtgc ctatagtaaa aaaagaaggg gcagatattg tcgttgcatt
     5281 ggcacatacc ggcccttcag acgaacccta taaagaaggc gctgagaact gtgcgtttta
     5341 tctagctgat gtaaaaggta ttgatgcagt tattttcggg cattcacatc gcctgttccc
     5401 aaataaagaa tttgcaaatt caccaaatgc cgatattgca aaaggaacaa tgaaaggcgt
     5461 accggaaagt atggctggct actggggaaa taacatcagt gtgattgatt taagcttggc
     5521 cgaaaacgat ggtaaatggg gcgttgtgga cggtagagca gagttgcgtc caatttataa
     5581 tacggaagag aaaaaagcaa ccgttgagaa ccaccctgaa atcgttgcat tattaaaaga
     5641 aacccatgaa gcaacccgtc aatttgtgtc tcaacctatc ggtaaagcaa ctgataatat
     5701 gtatagttac cttgcgttag ttcaagatga ccctaccatt caaattgtga accaagctca
     5761 aaaagcgtat gtagaaaatg tggtaaaagg cttgccggag cttgcaggat taccaattct
     5821 aagtgccgga gcaccgttta aagccggtgg acgtaaaaat gacccgacag gctataccga
     5881 agtcgataaa ggcgaattaa ctttccgcaa tgcggcagac ttataccttt acccaaatac
     5941 cttagtggtg gttaaagcaa caggagcaga attaaaagag tggttagagt gcagtgcagg
     6001 aatgttcaaa caaattgatg tcgcttcgga taaaccgcaa tatttactgg attggacagg
     6061 tttccgcacc tataactacg atgtaattga cggtgtcagc tatcaatttg atataaccca
     6121 accggctcgt tatgacggcg agtgcaaatt gatcaaccct aattcgcacc gtgtggtgaa
     6181 cttaaccttt gacggcaaac cggttgatcc taaacaagaa ttcttaattg ccaccaacaa
     6241 ttaccgtgct tatggagcaa aattcccggg aacaggcgat aaacatattg tgttcgccgc
     6301 accggacgaa aaccgccaag tgttagcgaa ttatattacc accgaaagta aagctcacgg
     6361 gcaggtaagt ccgaaagcgg ataacaactg gcgtattgca ccaattagct caaatgcaaa
     6421 attggatatt cgttttgaaa cctctccaac agataaagct aaagctttca ttaaggaaaa
     6481 tgcacaatat ccgatggagt atatcgaaaa cgatgaaacc ggcttcgcag tttaccgtat
     6541 tgatttaacc aaataatcag agctaaatac aagcggtcta atttgcaaaa aaattaacaa
     6601 atttgaccgc ttgtttcatt ccatttttct aaaattgttg tgctatattt tgccgaattt
     6661 catcaaaatt ggtcgatttg accaacttac cattttcaaa aaccacctct aaaagatcat
     6721 ctgaaaaatc atccagtgcg gttagctcgt caacataatg atcataagag attactttta
     6781 ctcgcccttt ttgcgatttt tttaagccgt tatcggtttt aggagctttg aaaattgcct
     6841 tttcgacacc gttaattgta attgaagtcg ctttgattgc aaaacccagc gtatcacgag
     6901 tattgcgttg ataagtttga gccccaacgc caaacacaat attgctggaa gcaaaacctt
     6961 ttgccgttaa gccctctaaa atccgtatca ttttatcata agtgacgccg tcaccataaa
     7021 ttgccccaat atgcggatta agcactttat aacctttttg gttaatacta ccaccaaaaa
     7081 tatcccacaa acactcaatc agacctttgc gttcgtgttc aacgggggag gaattgttac
     7141 cgcaaataat tgtaaaaaaa tcaccgctat cagggcggat aaccaatttt gctgattccg
     7201 gtcgagctaa aatttcttgt tttaataatg gcaaattaac ggtgatgtta tgccagaaat
     7261 cggttgtatc tgccacaata gatagcatat tatttggata ttttgccatt aaataacgga
     7321 aagtcggcag ctcatcaaca ccgtgtgaac tcatcaccga atgttctgat gccggaatag
     7381 atgtaccgat taaatgttga gaaccataat aggctgtcac gaatgaaatt gcaggaatgg
     7441 tatctgtgcc taaaaatgag gttagatgtc cggcaccgga gctttctgct gattctaagg
     7501 aactcattcc acgcatagag aaatcgtgtg cctggaaggg tagatggcta ttatcatcac
     7561 aggtttgctc tgaaaattcg gctagagcct tacgataagc aaatgcaatg gaagctgatg
     7621 taataggctg ccataatgac acattaatca gggtttccaa ataattagtc agccaaaaaa
     7681 agcttgagtg agtgttttca attgtcatta aaggaacttt cactgcaaca gattttcctt
     7741 ctggaatagc tttaattctg ataggtaagt aaccgagctg atgcaattgt gcaatatgtt
     7801 cgccagagtc ctcaatattc aatgtgtcag aaataaattg agtatattca gaaacaacgt
     7861 catgt
//
LOCUS       DANMBQ010000112         7849 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.112, whole genome shotgun sequence.
ACCESSION   DANMBQ010000112 DANMBQ010000000
VERSION     DANMBQ010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7849
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.112"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(1..399)
                     /locus_tag="PXE92_002052"
     CDS             complement(1..399)
                     /locus_tag="PXE92_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761265.1"
                     /translation="MIVKLKLGAVVVLSQVKQATIAYAGSEAYQTAIEQAKKGLLDED
                     KGKPFETVLHFPAVYADEDGQEEICPEQIATTVRSDNVSGEPVAVVLIPDDNVVGELQ
                     SIFIYKTDYAEIFTDNGVKLSAVRTSPAPR"
     gene            complement(535..708)
                     /locus_tag="PXE92_002053"
     CDS             complement(535..708)
                     /locus_tag="PXE92_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761266.1"
                     /translation="MYPPAAYLVPCERTEFSGNTYGDTVEYLIKVMGERDLCANQIDR
                     IREWQAQTKQGFK"
     gene            complement(713..1063)
                     /locus_tag="PXE92_002054"
     CDS             complement(713..1063)
                     /locus_tag="PXE92_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HDL5761267.1"
                     /translation="MSKYIYLVATILILGLCGWIWQQSKQINTLRAENQTQAQTIEQQ
                     QKANQRLADKLEQERQAVEKIRKSANEMRNKVEIVQNEIKSILAQDSCAKADLPNGVA
                     DSIKRLHRQNNHKH"
     gene            complement(1064..1660)
                     /locus_tag="PXE92_002055"
     CDS             complement(1064..1660)
                     /locus_tag="PXE92_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 19 protein"
                     /protein_id="HDL5761268.1"
                     /translation="MLISERKFKQVFPSAIDGIYAEIAKHIEKAGCKTKEQQAMFLAQ
                     CGVECAGYKTFEENLNYSATALLATFPKYFTQHNVVLYARDKRAIANRVYANRMGNGN
                     EQSGDGWKYRGRGLIQITGKANYIEFAKWEGLPSLVTSPDQITDNLALTVQVAVWYWQ
                     SRKLASYGSDILKVTKLINGGTHGLSQRTNYYQRLMVA"
     gene            complement(1650..1997)
                     /locus_tag="PXE92_002056"
     CDS             complement(1650..1997)
                     /locus_tag="PXE92_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin, lambda family"
                     /protein_id="HDL5761269.1"
                     /translation="MPEKNPDIYTQAWNYFAMFVSNHSSFICAVIIAFFTSITKSFLY
                     GKTDTPKRVFAEAILCAVIAGSLRPILIYFNADVSLITPIGAGIGLLGTSAIRQMILK
                     FLNKKAGVDDNVN"
     gene            complement(2161..2967)
                     /locus_tag="PXE92_002057"
     CDS             complement(2161..2967)
                     /locus_tag="PXE92_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL5761270.1"
                     /translation="MKKLVLVTALSLVLSACGSGGGGGSSASNPNKEATPQSPSKSET
                     KSDTSSQNQVKGALSKVSADLQEQVKALKQINVDGRIIELAQEPIGFIEKDLDNGKKG
                     KAYNLAYSSIGYVLPKDVKTDEYGRVIDERASANDVGIFGLATKFQDLPKSGTAHYSG
                     VSFGANSEGKLTLTADFGDKKVNGSITERKLLSNNQALSSINLLSAPISQTKFAGEEI
                     HFAGIAQANVEGNIVQAPYGGKFMGPKAEEVVGFVADDHNDPYEVFAGQK"
     gene            complement(3047..3406)
                     /locus_tag="PXE92_002058"
     CDS             complement(3047..3406)
                     /locus_tag="PXE92_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761271.1"
                     /translation="MLIDIKGILRFWGYSANGRLGTEFPCVAAGMKPAVSASNHRILR
                     LTDESIFEIDRCIKQLKEQEPQQYEVLIGRYAARVSDTQIEKVLGISHSTFKRELAQA
                     EMYVLGVVVGLKLALVV"
     gene            complement(3396..3755)
                     /locus_tag="PXE92_002059"
     CDS             complement(3396..3755)
                     /locus_tag="PXE92_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HDL5761272.1"
                     /translation="MVELVLPYPPSVNDYWRWVSKTRRVVCKRGKDYQWATFLAAQNK
                     PKFGGQVEIKCDVYFPDNRDRDLDNLGKCILDSLVYSKVIVDDSRHYVKKLTFEDKGN
                     QKGGAVIVRIKERLDVN"
     gene            complement(3748..4776)
                     /locus_tag="PXE92_002060"
     CDS             complement(3748..4776)
                     /locus_tag="PXE92_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HDL5761273.1"
                     /translation="MAEGLLLTPYFQTEVGIVFYKVPKDVSLAAFGERTLLQPAPTDL
                     ATVKSGKVANFSANSTACKELAEFAKSAKVRSTLNQRDKYSNDLPYTRFVKSIQTCQC
                     RDGKYCHHEKVFVENEKGAVQLCWYHDKMRMDGEIPNEKLEALADENWEKFIAQQIRL
                     TLRKTQSSAIEFADLVLFASIKGLLDELDSNALQQFLGYPPLNNSGVSKESNIGFDDV
                     PNARANLKKWAETLKLKVEPEPLAAFMAKPKLQRFEWRKWLQFVKAQPCMCCGQQADD
                     PHHIIGYGGAMGSKQHDLFTLPLCRIHHDELHRNVGKFEQDYGSQLELLIKFLDRAIG
                     LGALEIDG"
     gene            complement(4846..5418)
                     /locus_tag="PXE92_002061"
     CDS             complement(4846..5418)
                     /locus_tag="PXE92_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5761274.1"
                     /translation="MTDFDKDTYQTPNYVRNWLNHRYAWFHIDGCSNGKNALYSHWIG
                     KAAEGLDEDTLSGQIAEDFLAENLLDVILECVADWGELLRIFVNPPYSNPLPFVQRAA
                     ELKKAGHIVVMLLPADKSTRWYQVIQENASEVIDIIGGRINFINPLTDEEVKGNSKGS
                     MVAVFDPFVEGIVTRQMPLDKIKELGGYEK"
     gene            complement(5415..6050)
                     /locus_tag="PXE92_002062"
     CDS             complement(5415..6050)
                     /locus_tag="PXE92_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL5761275.1"
                     /translation="MGILATTTQNQVLPVEIVEQAEVETTKIFNRLKATHLGWRANIK
                     SQAEYDNARREWVRLLIENRLTPKEVERGLKIADTDKNPYLPSFGQFLEWCKSIDYAE
                     LGLPDMDQFLKRLNHFSAFGFTEIDNFKFRSNAEYWLLTDLYERNRKHSWKDETLRNQ
                     AEKALVEMAKRIMSGEQIPPPKPVIEEKKKVPIDPRIQRILDEKKQAGAMQ"
     gene            complement(6038..6829)
                     /locus_tag="PXE92_002063"
     CDS             complement(6038..6829)
                     /locus_tag="PXE92_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5761276.1"
                     /translation="MSMLLMVKAMNCTVGNSARKLVLLKLADNANDDGVCFPSYQFIA
                     DKCEMSKRSAISHIDELIKMGYVSKKSRKNKDGSSSNLYQLHLDAPSEKSALGGENFA
                     PGGSENSAPITSHSINQSINHNTSEQNSDGVDKKSKYRFSDNDMAVAKWIFKRVKQLA
                     PQTKESYLPNWANEVRLMVERDKHTHQEICSLFKFATEHHFWGRNILSVVSLRAKWDR
                     LNLERQSSLRPNNIHSATGNGDIQDTTGFSKGLVVDVGGGTKWEF"
     gene            complement(6826..7587)
                     /locus_tag="PXE92_002064"
     CDS             complement(6826..7587)
                     /locus_tag="PXE92_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HDL5761277.1"
                     /translation="MKSQSLLPITAQNASGAEVKISSIEIAELCEKQHKNVIVDIRKM
                     LAELKLNSADFSAQYQTKDGRMQPCYFLPKRETMILVSGYRIDLRAKIIDRLDELEKQ
                     HQPSIPKNYPEALRMAAELAEQNQVLLLEKQQTTAENHALKSYFEPGLTPAQFVKGLN
                     GVNSNKINDYLRSRGWLYKDKHCWRVFSHVRDKYLTESFKRIEVDPVERIEMATYKPI
                     LLEKGAVKIFEAYLQGKLPMKADWNGKYYHSKVAV"
     gene            complement(7636..7842)
                     /locus_tag="PXE92_002065"
     CDS             complement(7636..7842)
                     /locus_tag="PXE92_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014064343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5761278.1"
                     /translation="MEKSKWGEISRLAKAIDVAIPIVSFWVNGKRQVPAKRCPEIEKF
                     TEGKVTCEELRPDVDWAVLRNSGK"
BASE COUNT         2112 a         1835 c         1420 g         2482 t
ORIGIN      
        1 ttaacgagga gctggacttg ttcttactgc acttaatttc acaccattgt cagtaaaaat
       61 ttctgcataa tctgtcttat aaatgaaaat agactgtaac tcgccaacta cgttatcatc
      121 tgggattaat accactgcaa caggctcacc acttacatta tctgaacgta ctgtagttgc
      181 aatctgttca gggcaaattt cttcttgtcc atcttcatcg gcatacacag cagggaagtg
      241 aagaacagtt tcaaatggtt tacctttgtc ttcatcaagt aaacctttct tggcttgctc
      301 aatagctgtt tggtatgcct ctgatccagc gtatgcgatg gtggcttgtt taacttgtga
      361 tagcacaact accgcaccta atttcaattt cacaatcata aataatcctt atgttaatag
      421 aacacattgc ttagttatgg tcttgatata accaaaagca taactaagta atgcggtaca
      481 ataaaaaagg gagctgttac gctcccatat gtcatagcgg cttaatccgc caagctattt
      541 aaaaccttgt ttggtttgtg cttgccattc tctgatacgg tcgatttggt tagcacacaa
      601 atcacgctct cccatcactt ttatcagata ctcaaccgta tcgccgtatg tattgccgct
      661 aaattcagtc cgctcgcacg gcacaaggta agccgccggc ggatacaaat attcagtgct
      721 tgtgattgtt ctgcctgtgc aaccgcttaa tgctatcagc aacgccatta ggcaaatcag
      781 ctttagcaca actgtcttgg gcaaggattg acttaatctc attttgaaca atctccactt
      841 tgtttcgcat ttcatttgca ctttttcgga ttttttcgac cgcttgtcgc tcttgttcga
      901 gcttatcagc aagccgttga ttggcttttt gctgctgctc aatggtttgg gcttgcgttt
      961 ggttttcggc tcttaaggta ttaatctgct tggactgctg ccaaatccaa ccacacaagc
     1021 ccaaaatcaa aatggtggct acgagataaa tatatttact catttatgcc accattaatc
     1081 gttgataata gttcgtgcgt tgtgatagcc cgtgagtgcc gccgttaatc agcttggtta
     1141 cttttagaat gtcactaccg taacttgcta atttgcgact ttgccaatac cataccgcca
     1201 cctgcaccgt aagagcaagg ttatctgtga tttggtcagg actggtcacc aagcttggca
     1261 acccctccca cttcgcaaac tcaatataat tcgctttacc agtaatctgg atcagcccac
     1321 gcccacgata tttccaacca tcgccacttt gttcattgcc gttacccatt cgatttgcat
     1381 acacccgatt agcaatcgca cgcttatctc gggcataaag cacaacattg tgttgggtaa
     1441 aatatttcgg aaatgtggct aataatgccg tagcggaata attcaaattc tcttcaaagg
     1501 ttttataacc agcacactct acgccacatt gagccaaaaa cattgcttgc tgctctttcg
     1561 tcttgcaacc ggctttttca atgtgtttgg caatttcggc ataaattccg tcaatcgcac
     1621 tggggaatac ttgtttaaat tttctttcgc taattaacat tatcatcaac tcctgctttc
     1681 ttattgagga atttcaaaat catttgacga atagcacttg tccctagtag tccgataccg
     1741 gcaccaatcg gggtaattaa ggaaacatca gcattaaaat agattaaaat cggacgcaac
     1801 gaaccggcaa tcaccgcaca cagaatcgct tctgcaaaga cccgctttgg tgtgtcggtt
     1861 ttgccgtata aaaatgactt ggtaatagac gtaaaaaaag caatgataac agcacaaata
     1921 aaactgctat gattgctgac aaacattgca aaataattcc aagcctgcgt atatatatca
     1981 gggttctttt caggcattgt attcatactc caccccactt tttcggggca acaaaaaagc
     2041 cccgactggc tgaaccaatc agggctataa aaatagtatt gcgtaatgca cttgcactaa
     2101 tcgcaaggat tgcataaatc ctatactttt agggcgacct tgtcaatcat acattaaaaa
     2161 ttatttttga ccagcaaata cttcatatgg gtcattatga tcatcggcaa cgaaaccaac
     2221 aacttcttcc gcttttggcc ccataaattt accgccataa ggagcttgaa caatgttacc
     2281 ttctacgttg gcttgagcaa tgccggcaaa atgtatttct tcaccagcaa acttggtttg
     2341 actgataggg gcagataata agttaataga agataatgct tggttattag ataatagctt
     2401 tctttcagta attgagccat ttactttctt gtcaccaaaa tcagcagtaa gtgttaattt
     2461 accttcactg tttgcaccaa atgatacgcc agagtagtgt gcagttccgg attttggtaa
     2521 atcttggaat ttggttgcta gtccaaatat accgacatca ttagcagaag ctcgctcatc
     2581 aattactcgt ccatattcat ccgtttttac atctttaggt aacacataac caatactaga
     2641 ataagctaag ttataggctt ttcctttttt gccattatct aaatcttttt ctataaaacc
     2701 gataggctct tgggctaact caatgattct accatcaaca ttaatttgct taagtgcttt
     2761 tacttgctct tgtaaatctg ccgaaacttt agataaagca ccttttactt gattttgaga
     2821 tgaagtatct gacttagttt cacttttaga tggggactgt ggagtagctt ccttattagg
     2881 atttgatgct gatgagccac cacctccacc actaccgcaa gcagataaaa ctaaacttaa
     2941 tgctgtaact aaaactaact ttttcattgg taaaatctcc ataggtaaaa agagtctata
     3001 ctttatctca tttattgaat taatgttgtg atacagatca cattatttaa accaccaacg
     3061 ccaattttaa cccaactacc acacccagca catacatttc cgcctgtgcc aattctcgtt
     3121 taaaggtgga gtgactgata cctaatactt tttcgatttg tgtatcagat acccttgctg
     3181 cataccgacc aatcagcacc tcatattgct gaggctcttg ctctttaagt tgcttgatac
     3241 agcggtcaat ttcaaaaatg gattcgtcag ttaaacgtaa tatgcggtgg ttgcttgccg
     3301 atacagcagg tttcatccct gccgccacac agggaaattc cgtaccaagt ctgccgttgg
     3361 cggaatagcc ccaaaaccgt aaaatacctt taatatcaat taacatctag tctctcctta
     3421 atccttacaa ttaccgcacc gcctttttga ttgcccttgt cctcaaatgt cagctttttg
     3481 acatagtgcc gggagtcatc aacaatcact ttgctatata ccaacgaatc taaaatacat
     3541 ttgcctaagt tatccaaatc ccgatctcgg ttatcaggga agtaaacatc gcacttaatt
     3601 tcaacctgtc cgccaaattt aggtttattc tgtgctgcga gaaatgttgc ccattgatag
     3661 tctttgcctc gtttacacac cactcgtctt gttttgctta cccaccgcca atagtcgttt
     3721 acacttggcg gatagggcag caccaattca accatcaatt tctaacgccc ccaaacctat
     3781 cgctcggtct aaaaacttaa tcaacaactc taattgcgag ccgtaatctt gctcaaattt
     3841 acccacattg cgatgcaatt catcgtgatg aatacggcat aggggcagag tgaataaatc
     3901 gtgctgtttg ctccccatcg ctccgccata gccgataata tgatgtgggt cgtctgcttg
     3961 ttgtccgcaa cacatacaag gctgtgcttt tacaaactgc aaccacttcc gccactcgaa
     4021 ccgctgtaat ttcggttttg ccataaatgc cgccaacggc tccggctcga ctttcagttt
     4081 taacgtttca gcccactttt tgaggttggc tcgagcattc ggcacatcat caaatccgat
     4141 attactttct ttgctcacac cgctattatt cagtggtgga tagccgagaa actgctgtaa
     4201 tgcgttgctg tctaattcat caagcaaacc tttgatactc gcaaacaaca ctaagtccgc
     4261 aaattcaatg gcagaagatt gcgttttgcg taaggttaag cggatttgtt gggcgataaa
     4321 tttttcccag ttttcatccg ctagtgcttc taatttttca ttcgggattt caccgtccat
     4381 tcgcattttg tcgtgatacc aacaaagctg taccgcacct ttttcattct ccacgaatac
     4441 tttttcgtgg tggcagtatt taccatctcg gcattggcac gtctgaattg actttacaaa
     4501 ccgggtataa ggcaaatcat tactgtattt gtcacgctga tttagcgttg agcgaacttt
     4561 tgccgattta gcaaactctg ccaactcttt acaagcggtc gaatttgccg aaaaatttgc
     4621 aaccttgcct gatttaaccg ttgctaaatc ggtcggtgca ggttgcaaca aagtccgctc
     4681 accgaaagca gcaagagaaa catctttagg cactttgtaa aacacaatac ccacttcggt
     4741 ttgaaagtaa ggggtaagta gcaaaccttc cgccattatt gcccccattt ctttttgttg
     4801 cggctaaggc aatgatacgc cttatctaaa ccgtcccagc cttcgttatt tttcatagcc
     4861 gcccagctcc ttaatcttat ccaacggcat ttgacgggta actattccct ccacaaacgg
     4921 atcgaacacc gccaccatcg agcctttgct gttgcctttt acttcctcgt ctgtgagcgg
     4981 attgatgaaa ttaatacgtc cgccgataat gtcgatcacc tcactagcgt tttcttggat
     5041 aacctgatac caacgggtag atttatctgc cggtaaaagc attaccacaa tatggccggc
     5101 ttttttcagc tctgccgccc gttgtacaaa cggcagtgga ttgctgtatg gcggattcac
     5161 gaaaatacgc agtaattcgc cccaatctgc cacacattcc aagatcacat cgagcaagtt
     5221 ctctgccaag aaatcctcgg caatctgacc acttagtgtg tcttcgtcta agccctctgc
     5281 cgctttgcca atccagtggc tatacaatgc gtttttgccg ttagaacaac cgtcaatgtg
     5341 aaaccacgca tagcgatgat ttagccaatt acgcacataa ttaggtgttt ggtaagtgtc
     5401 tttatcaaaa tctgtcattg cattgctcct gcttgtttct tctcgtccaa aattcgctga
     5461 atgcgtggat ctattggcac tttctttttc tcttcgatta ctggcttagg aggtggaatt
     5521 tgttcaccgc tcataatccg ttttgccatc tctactaacg ctttttcagc ttggttacgt
     5581 aatgtttcat ctttccaact atgttttcga tttcgttcat aaaggtcagt taagagccaa
     5641 tattcagcgt ttgaacgaaa cttaaaatta tcgatttcag taaacccaaa agcggaaaaa
     5701 tgatttaaac gcttgaggaa ttgatccata tcaggcaaac ctaattctgc gtagtcaatg
     5761 gatttacacc attcgaggaa ttgtccaaag ctcggtaaat agggattttt atcggtatcc
     5821 gcaattttca aacctcgttc aacttctttt ggcgttaagc gattttcaat caacaaacga
     5881 acccattcac ggcgagcatt atcatattcg gcttgactct tgatattggc tcgccagcct
     5941 aagtgagttg ctttcaagcg gttgaaaatc ttggttgttt ccacctctgc ttgttccaca
     6001 atctcaacag gtaatacttg attttgagtc gttgtagcta aaattcccat tttgtccctc
     6061 ctcctacatc aacaacaaga ccttttgaaa accccgttgt gtcttgaata tcaccattgc
     6121 ctgttgctga gtgaatattg tttggtcgta atgatgattg cctttctaga tttagccgat
     6181 cccacttagc tcgaagagat acaacactta ggatattcct gccccaaaaa tggtgttcgg
     6241 tcgcaaattt aaacaacgag caaatttctt ggtgagtatg tttatcacgt tctaccatca
     6301 agcggacttc attggcccaa ttcggcaagt aagactcctt ggtctgagga gctagttgtt
     6361 tcactcgttt aaaaatccac tttgccactg ccatatcgtt atcagaaaaa cgatattttg
     6421 attttttatc caccccgtcc gaattttgtt cggacgtatt atggttaatt gactggttaa
     6481 tagagtgact ggttatgggt gcagaatttt cactaccccc tggtgcaaaa ttttcacccc
     6541 ctagtgcaga tttttcacta ggggcatcaa ggtgtaattg atataaattt gaactagacc
     6601 catctttgtt tttgcgtgat tttttgctca catatcccat tttgattaat tcatcaatat
     6661 ggctaatagc actgcgttta gacatttcac acttatctgc aataaattga taactaggaa
     6721 agcaaacacc atcatcattt gcgttatcag cgagttttaa cagcactaat ttacgggcag
     6781 aatttcccac cgtacaattc atcgccttaa ccattaataa catactcata ccgccacctt
     6841 actgtgataa tacttgccgt tccaatcggc tttcattggt aacttacctt gtaaataagc
     6901 ctcaaaaatc ttaacagcac ctttctcaag caaaattggc ttgtaggtgg ccatctcaat
     6961 acgttcaaca ggatcaactt caattctctt aaatgactcc gtcagatatt tatcccgaac
     7021 gtggctaaac acccgccagc aatgcttgtc tttgtataac cagcctcgac tacgtaaata
     7081 atcatttatc ttgttactat ttacgccatt cagccctttt acaaactgag caggggtcaa
     7141 acccggttca aagtaggatt tcaaggcgtg gttttctgcg gtagtctgct gtttttccaa
     7201 caataaaact tggttttgtt ccgccaactc cgctgccatt cgcagagcct cggggtaatt
     7261 tttcggaata gagggctgat gttgcttttc taactcatct aagcggtcaa tgattttggc
     7321 tctcagatca atgcgatagc cggaaactaa aatcattgtt tctcgttttg gaagaaagta
     7381 gcagggttgc attctgccgt ctttggtttg atactgggct gaaaaatcag ccgagttcaa
     7441 tttcagctca gctaacatct tgcgaatatc tacaataacg ttcttatgtt gtttttcgca
     7501 taactctgca atttcaatac tgctgatttt gacttccgca ccgcttgcat tttgtgcggt
     7561 tatcggtaat aatgattggg atttcaaaat aaacctcctt aggttgtaat tagccaccgt
     7621 tccagcggtg gttttttatt tgcctgaatt tcgtaaaact gcccaatcaa catcagggcg
     7681 tagctcttca caagttactt tcccttctgt aaatttttca atttccgggc aacgctttgc
     7741 cggtacttgg cgtttgccgt ttacccaaaa tgaaactatt ggaattgcta catcgatggc
     7801 tttagctaat cgagagattt ccccccactt agatttttct atgtattct
//
LOCUS       DANMBQ010000113         7699 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.114, whole genome shotgun sequence.
ACCESSION   DANMBQ010000113 DANMBQ010000000
VERSION     DANMBQ010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7699
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.114"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            52..2400
                     /locus_tag="PXE92_002066"
     CDS             52..2400
                     /locus_tag="PXE92_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5761279.1"
                     /translation="MLISAQFSPLVWAENNDVAVLDEVSVVGSTPSISQGSEVTLLKV
                     SDKIIAGKEFKKRSATLGNALASELGVHSNPFGGGASKPIIRGQEGARIRILQNGSDV
                     IDMSNLSPDHAVVADSLLADQVEILRGSSTLLYASSSPVGIVNVVDKRIPTAIPEKGY
                     EVELNSRFDTAAKEKVGALGATFGIGNHIAVRVEGLSRHSDNYRVPGINLGERLNYVP
                     DTYNKSKVGTLGLSFVGERGYIGASYSKRRDNYGLPGHNHKFDFCTGHIYGNKRDKYA
                     YTYLYPHLIGEENIGSNPHFHCGTNHAEDGTHSHDNPFGHAHDHTHKGPWVDLESKRI
                     DVKAELRQPFKGVDKIKASYADADYYHDEKDAGVLATRYHKQLKKDQDYGKPVNIFKN
                     RGKNTRLEVYHAPLGGLTGVWGVQYQTQKSSMNAPKDREVKFPLVENTNKQFSLFGVE
                     QYMWDSVAVELAGRMEKQKIEIEYDRNEIKRLQEHYRISGGKQVEPDLSPYDETAYAY
                     SGTLNWFFHPDYQLSFTASHNERLPTPMELYYHGQHIATNSFEYGNKDLKKEQSNNVE
                     LGLGYQAERIGYKVSVYYNHFKNYIYNENLFRENQLFMRRYNQAKARFYGVEAEASYR
                     FNDQYQATIFGDMVRGWLTNLPPLKINSDYSVFKDYLPENVEKGKDYLLYRADQNTPR
                     TPPMRLGFRFNAEFTPNWSGDLELIRTFTQRRTSQLEYITEGNTMLNVGLSYSNKWKE
                     LDYKISLNGTNLLNQPVYIHTSYHQFVPQMGRNFMLGMEMKF"
     gene            2757..5027
                     /gene="nrdA"
                     /locus_tag="PXE92_002067"
     CDS             2757..5027
                     /gene="nrdA"
                     /locus_tag="PXE92_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL5761280.1"
                     /translation="MNKSLMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELR
                     SHIQFYEGIRTSDIHETIIKAAADLITKDTPDYQYLAARLAIFHLRKKAYGQFEPPHL
                     YEHVKKLVALGKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNR
                     VSGEIYESAQFLYLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTP
                     TRQFSSCVLIECDDSLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHT
                     GCIPFYKHFQTAVKSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMD
                     YGVQINKMMYQRLIKGGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQRK
                     VKAVELFSLLMQERASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLA
                     HFYDEQGEIALCTLSAFNLGTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSL
                     NRRALGVGVINYAYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACA
                     YFDQTTYAKGLLPIDTYKKEIDELTQEPLHYDWEQLRQDILQFGLRNSTLTALMPSET
                     SSQISNATNGIEPPRGYISVKASKDGILKQVVPEYERLKAYYELLWDIPNMDGYLHLV
                     GIMQKFVDQAISANTNYDPNRFAEAKVPMKVLLKDLLTAYKYGLKTLYYQNTRDGAED
                     VQDDLDEGCAGGACKI"
     gene            5054..6184
                     /gene="nrdB"
                     /locus_tag="PXE92_002068"
     CDS             5054..6184
                     /gene="nrdB"
                     /locus_tag="PXE92_002068"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL5761281.1"
                     /translation="MAYTTFSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQ
                     LSFFWRPEEVDVSQDRIDYAQLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSI
                     PELETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDD
                     LIRDSQLYSLYGEGSYQVDGKTCEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFA
                     FAERQLMEGNAKIIKFIARDEALHLTGTQHILNIMAYGNDDPEMAEIARECRQEAYEL
                     FLSAAEQEKAWAEYLFKDGSMIGLNRDILVQYIEYITNIRMQAVGLPLPFKARSNPIP
                     WINAWLVSDNVQVAPQEVEVSSYLVGQIDAKVDSRDFGDFEL"
     gene            complement(6265..7035)
                     /locus_tag="PXE92_002069"
     CDS             complement(6265..7035)
                     /locus_tag="PXE92_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDL5761282.1"
                     /translation="MTITNTELEQILNTKLNSSAINDYAPNGLQVEGKREIKKIITGV
                     TATLPLIEKAIEKNADAILVHHGYFWKSENPCIRGMKGKRIKQLLVNDINLFGYHLPL
                     DIHSELGNNAQLAKHLGVKNLQGLEDRPNSIPMYGELENPISANELKQKLEKTLQRTV
                     ILCDEFVHSPQKMIKTIGICSGGGQGYIDLAFEKGCDAFISGEISEQTTHSAREQGIY
                     YFACGHHATERDGVKALGEWLAVEYGLDVEFIDIDNPA"
     gene            complement(7119..>7699)
                     /locus_tag="PXE92_002070"
     CDS             complement(7119..>7699)
                     /locus_tag="PXE92_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDL5761283.1"
                     /translation="TTIMQRISGAKQIDSLTVKIKDDIESQTAEKSIAELLVAKHGKK
                     DFFIMNSDTIKQTITSTTNTMTLLISSIALISLIVGGIGVMNIMLVSVTERTREIGVR
                     MAIGAKQRNILQQFLIEAVVICLIGGVIGILLASAIIWAFNTLGTNFKMMLSPESVII
                     AVLCSTLIGVVFGYIPARNAAQLNPITALAQE"
BASE COUNT         2278 a         1453 c         1690 g         2278 t
ORIGIN      
        1 tccttaattt ttttaaggag aaagattgtg tttaagaaaa caggattggc attgctgatt
       61 tcggctcaat ttagcccgct tgtttgggcg gaaaataacg atgtagcggt gttagatgaa
      121 gtttcggtcg ttggcagcac tccaagtata tcgcagggga gtgaagttac cttgctaaaa
      181 gtcagtgata aaattattgc aggtaaggaa tttaaaaagc gttcggcaac gctgggtaat
      241 gcgttggcgt cagaattagg cgtgcatagt aacccgtttg gtggcggagc gagtaagccg
      301 attattcgtg ggcaggaagg ggcgagaatt cgcattttgc aaaacggttc agacgtgatt
      361 gatatgtcga acctatctcc tgatcacgcc gttgttgctg attcactgct tgccgatcag
      421 gtcgaaatct tgcgtggttc cagcaccttg ctttatgcca gcagttcgcc ggtaggaatt
      481 gtaaatgtgg tggataaacg tattccgacc gctattcctg aaaagggata tgaggttgaa
      541 ctcaatagcc gttttgatac cgccgccaaa gagaaagtcg gcgcattagg ggcaaccttt
      601 ggcatcggta accacattgc ggtgcgagtc gaagggctga gtcgtcatag tgataactac
      661 cgtgtgccgg ggatcaactt aggcgagcgc ttaaactatg tgccggacac ttacaataaa
      721 tccaaagtcg gcacgttggg cttatccttt gtcggtgaac gaggctatat tggtgcctca
      781 tacagcaaac ggcgggataa ttatggcttg ccggggcata accataaatt tgatttctgt
      841 accggtcata tctacggtaa taagcgggat aaatacgctt atacctatct ctatccgcat
      901 ttgattggtg aggaaaatat tgggagcaat ccgcacttcc actgtggaac caaccacgcc
      961 gaggacggca cacacagcca cgataacccg ttcggacacg cccacgatca cactcacaaa
     1021 ggcccgtggg tggatttaga atcaaaacgg attgatgtga aagccgagct acgccagccg
     1081 tttaagggcg tagataaaat taaggcaagc tatgctgatg ccgattatta ccacgatgaa
     1141 aaagatgcag gcgtgcttgc cacccgttac cataaacagc tgaaaaaaga tcaggattac
     1201 ggcaagccgg tgaatatttt caaaaatcgg ggcaaaaata cccgcttgga ggtctatcac
     1261 gcaccgctag gtggcttaac cggtgtatgg ggtgttcagt atcaaacgca aaaaagcagt
     1321 atgaatgcgc cgaaagatcg cgaagtgaaa ttcccgctgg ttgaaaatac caataaacag
     1381 ttcagcctgt ttggggttga gcagtatatg tgggatagcg ttgctgttga gcttgccgga
     1441 cgaatggaaa agcagaagat tgagattgag tatgatcgca atgaaatcaa acggttacaa
     1501 gaacactacc gtatcagtgg cggcaaacag gttgagccag atctttcacc ctatgatgaa
     1561 acggcttatg cctattccgg cacgcttaac tggttcttcc accctgacta tcagctttcg
     1621 tttactgcct cgcacaatga acgcttgcca acgccaatgg agctgtatta tcacgggcag
     1681 catattgcta ctaattcgtt tgaatacggc aataaagact tgaaaaaaga gcagtcaaat
     1741 aatgtggagt tgggcttggg ctatcaagct gaacgtattg gctataaagt gagtgtttat
     1801 tacaatcact ttaaaaacta catctacaat gaaaatcttt tccgtgaaaa tcagctattt
     1861 atgcgccgtt ataatcaggc aaaagcccgt ttttacgggg tagaagcaga ggcaagctac
     1921 cgctttaacg accaatacca agccacgatt ttcggcgata tggtacgagg ctggctaaca
     1981 aatttaccac cattgaagat aaatagcgat tatagtgtgt tcaaagatta tctgccggaa
     2041 aatgtggaaa aagggaaaga ttatcttcta tatcgggctg accaaaacac ccctcgtaca
     2101 ccgccaatgc gtttaggttt tcgctttaat gcggaattta ccccaaattg gtcgggggat
     2161 ttagagctga tccgcacctt tacccaacgc cgtacgagcc agttggaata tattaccgaa
     2221 ggtaatacga tgttgaatgt cgggttgtcg tatagcaata agtggaaaga gctggattac
     2281 aaaatcagtc taaacggcac aaacttactg aatcagccgg tgtatatcca cacttcgtat
     2341 caccaatttg taccacaaat gggacgaaat tttatgttgg gaatggagat gaaattttaa
     2401 gttctcgaca taacaagaca agcggttatt ttttcttcaa attttgcaaa aaaacggcta
     2461 aaaataaccg cttgtttaaa actcaggtat tggtaatttg gataaaatag tgctgttttt
     2521 cctttcttgt tattttcgga gcttaccaaa atttcctgtt tgttgttaaa taagacaatt
     2581 aactttatcc ctttattaaa aatatggtta tttataaata acttagcatc tgtcaagaga
     2641 aaaagtaaaa atttattggt tgatgttttg ctttaagcac actatcttgt gtttacttta
     2701 atgaaaaaca caagatgtag tgttttacta aggtatttta taaagggtta ataattatga
     2761 ataaaagttt aatggtaaca aagcgtaatg gcacgcgcga gcaactcaat ctagataaaa
     2821 ttcatcgtgt gattacttgg gcggcagaag ggttagagaa tgtttctgtt tcacaagtag
     2881 aactccgttc tcacattcaa ttttatgaag gtattcgcac ttcagatatt catgaaacta
     2941 ttatcaaggc tgcagctgat ctaatcacta aggatacgcc agattatcaa tatttagccg
     3001 cacgcttggc gattttccac ttacgcaaaa aagcttatgg acaatttgag ccaccgcatt
     3061 tatatgagca cgttaaaaaa ttagttgcgc taggtaaata tgatgcagac ttgctgagcg
     3121 actatacgcc cgaagaatgg gagacaatga atggatttat tgatcactgg cgggatatga
     3181 cgttttccta tgcagcagta aagcagttgg aaggaaaata tttagtgcag aatcgtgtta
     3241 gcggagagat ttatgaatcg gctcaatttt tgtatttact cgtagctgcc tgtttatttt
     3301 ctaagtatcc aacagcaagc cgcttagatt atattcgccg tttttatgat gcgacttcca
     3361 ctttcaaaat ttctttgcca acaccgatta tggcaggagt gcgtacacct actcgtcaat
     3421 ttagttcctg tgtgttaatt gagtgtgatg atagcttaga ttccatcaat gcaacctcgg
     3481 ctgcaatcgt taaatatgtt tcacagcgtg ctgggatcgg tattaatgcc ggcgcaattc
     3541 gggcattagg tagccccatt cgtggtggag aagcatttca taccggctgt attccctttt
     3601 ataaacattt tcaaactgca gtaaagtctt gctctcaagg tggtgttcgc ggtggagcgg
     3661 ctaccgtgta ttttccgatt tggcatttgg aagcagaaag cttaatggta ttaaaaaata
     3721 accgtggtgt ggaagaaaac cgtgctcgcc atatggatta cggggtacag attaataaaa
     3781 tgatgtatca acgtttaatt aaaggcggtg agattagttt atttagtcca tcagatgtgc
     3841 cggggttata tgaagcgttt tttgctgatc aagctaaatt tgagcaactt tatttgcaat
     3901 atgagcaaga tccgagcatt cggcaacgta aagttaaagc tgtagaattg ttttcattac
     3961 tgatgcaaga gcgggcttca acagggcgaa tttatattca gaatgtcgat cattgtaata
     4021 ctcatagccc atttaatcct cgtgtcgcac cgatacgcca atcgaacctc tgcttagaaa
     4081 ttgctttgcc aactaagcca ctggcacatt tttatgatga acaaggggaa atcgcattat
     4141 gtacattatc ggcatttaat ttaggcacac tcagcaattt agatgagtta gaagaattgg
     4201 ctgatttagt ggttcgtgcg ctagatgccc tattagatta tcaagattat ccggtattag
     4261 ctgcacgtaa cagctcatta aatcgtcgcg cattaggtgt aggcgtgatt aactatgctt
     4321 actatttagc taaaaaccaa gtgcgttatt ccgatggcag tgctaataat ttaactcacc
     4381 gtacctttga agcgattcag tattatttat taaaagcatc gatgaattta gccaaagaac
     4441 aaggggcgtg tgcttatttt gatcaaacca cttatgccaa agggttactc cctatcgata
     4501 cttataaaaa agaaattgat gaattaactc aagaaccgct tcattatgat tgggaacaac
     4561 tacgtcagga tattctgcaa tttggcttgc gcaattccac tttaactgcc ttaatgccat
     4621 cggagacttc gtcgcaaatt tcgaatgcca ccaatggaat tgaacctccg cgtggctata
     4681 ttagtgttaa agcatcaaaa gacggtattt taaagcaggt tgtgccggag tatgaacgtt
     4741 taaaagcata ctatgaactg ctttgggata ttcctaatat ggacggatat ttgcatttgg
     4801 ttgggattat gcagaaattt gttgaccaag cgatttcggc gaatacaaat tacgacccaa
     4861 accgctttgc agaagctaaa gtaccgatga aagtattatt aaaagatcta ttaacggcgt
     4921 ataaatacgg gttaaaaacc ctttactatc aaaatacccg tgatggagca gaagatgtgc
     4981 aagacgactt agatgaaggc tgtgctggtg gtgcttgtaa aatttaataa gaacagaaat
     5041 aaaggagaat aacatggcat atactacgtt ttcacaacat aaaaatgatc aactaaaaga
     5101 acccatgttt tttggacaaa atgtgaatgt ggcgcgttat gatcaacaaa aatacgaaat
     5161 ttttgaaaaa ctgattgaaa aacaactctc atttttctgg cgaccggaag aagtggatgt
     5221 gtcacaagac cgcattgact atgcccaact gcctgaacat gaaaagcaca tttttatcag
     5281 caatttaaaa taccaaacct tgttggattc cattcaaggg cgtagcccga atgtggcgct
     5341 tttgccatta gtgtctatcc ccgagcttga aacctggatt gaaacttgga catttagcga
     5401 aacaattcac agtcgttctt acacacatat catccgtaat attgtcaatg atccatcaat
     5461 agtatttgat gatattgtca caaacgaaga aattattaag cgtgccaaag atatttccgc
     5521 ctattatgat gatttgattc gtgacagcca actctatagt ttgtatggtg aaggcagtta
     5581 tcaggttgat ggaaaaacct gtgaggtcag tttgcgtagt ctaaaaagac aactttatct
     5641 ctgtatgatg agtgtgaatg cgcttgaagc aattcgtttt tatgtctctt ttgcttgctc
     5701 atttgccttt gcggaacggc agcttatgga aggaaatgcc aaaatcatca aatttattgc
     5761 acgtgatgaa gcattacatc ttaccggcac tcagcatata ttgaatatta tggcctatgg
     5821 caatgatgat cctgaaatgg cagaaattgc acgtgaatgt cgccaagagg cctacgagct
     5881 ttttttaagt gcagctgaac aagaaaaagc gtgggcggaa tacctgttta aagacggttc
     5941 gatgataggg ctaaatcggg atattttggt gcaatatatt gaatatatca ctaatattcg
     6001 gatgcaggct gttggactac cattaccatt taaggcacgt tccaacccca ttccgtggat
     6061 caatgcgtgg ttggtttccg ataatgtaca ggtagcacca caagaagtgg aagtcagttc
     6121 ttatttggtt ggccagattg atgctaaagt agatagccgt gattttggcg attttgaact
     6181 ttagactatg atatacaagc ggttgatttt tagtgatttt ttgcaaattg caaaattttc
     6241 aggaaattca accgcttgta ttttttatgc agggttatca atatcaataa attcaacatc
     6301 taaaccatat tcaacggcta accattcacc taaggctttt acgccatctc gttccgtggc
     6361 gtgatgaccg caagcaaaat aatagattcc ttgttcacgg gcagagtgag tggtctgttc
     6421 ggaaatttcg ccactaataa aggcatcaca gcctttttca aaggctaaat caatatagcc
     6481 ttgtcctccg ccggagcaaa tccctattgt tttaatcatt ttttgtgggc tatgaacaaa
     6541 ttcatcacat aaaataacgg tgcgttgtaa cgttttttca agtttttgtt tcagttcatt
     6601 ggcggaaatc ggattttcta attcaccgta cattggaatt gaattaggtc tgtcttctaa
     6661 accttgtaga ttttttactc ctaaatgctt agcaagctgg gcgttgttac ctagttcgga
     6721 gtgaatatcc agtggtaggt gataaccaaa gagattgatg tcattcacta aaagctgttt
     6781 aatgcgttta cctttcattc ctcgaatgca cgggttttca cttttccaaa aataaccgtg
     6841 gtggactaaa attgcatcgg cgtttttctc aatcgctttt tcaatcaggg gaagtgtagc
     6901 tgtcacaccg gtaataattt ttttgatctc tcttttccct tcaacttgca agccatttgg
     6961 ggcatagtcg ttaatggcgg agctgttgag tttggtgttc agaatttgtt ctagttcagt
     7021 attggttatt gtcattttat ctccttaaac ttggcataat aatggatgta ggggcaaaaa
     7081 attttttgcc cctacagtgt agcagatagt tatcgcattt actcttgtgc cagagcagta
     7141 attgggttta attgggcggc gtttcttgcc ggaatgtagc caaataccac accgataagt
     7201 gtagagcaga gcacggcaat aatcaccgat tccggtgaaa gcatcatttt aaaattcgta
     7261 cctaaggtat taaatgccca aataatagcg cttgccagta aaatgccaat cacaccacct
     7321 attaggcaaa taaccaccgc ctcaattaaa aattgttgca aaatattgcg ttgttttgcg
     7381 ccaatcgcca ttcggacacc aatttctcgg gtgcgttcgg tgacggaaac gagcataata
     7441 ttcattaccc cgataccacc gacaatcagc gaaataaggg cgatagagga gatcagcaaa
     7501 gtcattgtat tggtggtact ggtaatggtt tgtttgatcg tatcactatt cataataaag
     7561 aaatcttttt tgccgtgttt agctactaac aattcggcaa tgcttttttc ggcagtttgg
     7621 ctttcaatat catctttaat tttaaccgtg agtgaatcta tctgttttgc acctgaaatg
     7681 cgttgcataa tagtggtat
//
LOCUS       DANMBQ010000114         7592 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.115, whole genome shotgun sequence.
ACCESSION   DANMBQ010000114 DANMBQ010000000
VERSION     DANMBQ010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7592
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.115"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..755
                     /gene="fdhD"
                     /locus_tag="PXE92_002071"
     CDS             <1..755
                     /gene="fdhD"
                     /locus_tag="PXE92_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDL5761284.1"
                     /translation="QKDDEENLISEVPVALVYNGISHTVMMATPANLEDFALGFSLAE
                     GILNAPSELYGLDVIEQENGVEIQLEISSRQFVALKDKRRSMAGRTGCGICGVEQLEQ
                     VNQSCKIVKKNNRLQNVNPLILEDCLLQLENAQFLSKETGASHAAAFFTPDGKLLAIR
                     EDVGRHVALDKLIGWYAKADFPIGFVFVTSRASFEMVQKCLAVGIEMLCAISATTEMA
                     VNMARENQFTLLAFARKGKATIYAGEERLALN"
     gene            758..1687
                     /locus_tag="PXE92_002072"
     CDS             758..1687
                     /locus_tag="PXE92_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL5761285.1"
                     /translation="MEIALLLADKILQLTLMVLLGYLIVKTKLLKSEHSYPISVIGLY
                     IISPAMLITAFQVDYTTEILNGLYLAFLISVLLNGLLILLGWLLKRALKLDNIEQATA
                     IYSNSGNLIIPIVASLFGNEWVIYSTAFIVVQNVLFWSHLRLLICGKGNVPFRKMIFN
                     INIIAIVIGMMLFLLHIKLPATLANTLSTLGHMLGPLAMLVAGMLIAAIPFKEIITDK
                     RIYLVAFLRLIFIPLILLAVIKLGGFASWIENGKTVVMITFLATISPSAATATQMAVA
                     YGQDAKKASAIYGVTTLLCVFTMPLIIWLYQFL"
     gene            complement(1779..2288)
                     /locus_tag="PXE92_002073"
     CDS             complement(1779..2288)
                     /locus_tag="PXE92_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5761286.1"
                     /translation="MITLHTNFGDIKIELNFEKAPITAKNFEDYAKEGFYNGTIFHRV
                     IDGFMIQGGGMTAGMAEKPTKDPIQNEANNGLSNKRGTIAMARTSDPHSASSQFFINV
                     ADNTFLDYRSKEMFGRSVVQDWGYAVFGEVVEGMDVVDKIKGVKTGNKGFHQDVPVED
                     VVIESVSVA"
     gene            2444..3820
                     /gene="cysS"
                     /locus_tag="PXE92_002074"
     CDS             2444..3820
                     /gene="cysS"
                     /locus_tag="PXE92_002074"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDL5761287.1"
                     /translation="MLKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTF
                     VSFDVIARYLRYSGYNLRYVRNITDVDDKIIKRALENNETCDELVDRMIAEMHKDFDA
                     LNILRPDVEPRATKHIPEIIAMVEKLIHNGHAYVAADGDVMFDVESFQKYGALSRQNL
                     EQLQAGARVEIKSIKKNPMDFVLWKMSKAGEPSWESPWGNGRPGWHIECSAMNSKELG
                     EHFDIHGGGSDLMFPHHENEIAQSCCAHGGDYVNYWLHTGMLTIDKEKMSKSLGNFFS
                     IRHMLGLYDAESLRYFFLTAHYRSLLDYSIDNLDLARSALERLYTALRGCDVSGEAIG
                     EHYVEAFKTAMDDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLGL
                     LEQDPDAFLKGDANDDETAEIEALIKQRNEAKAAKNWAVADEVRDKLKAINIVLEDTP
                     NGTIWRKA"
     gene            complement(3935..4882)
                     /gene="thrB"
                     /locus_tag="PXE92_002075"
     CDS             complement(3935..4882)
                     /gene="thrB"
                     /locus_tag="PXE92_002075"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDL5761288.1"
                     /translation="MALRIYAPASSANISVGFDSLGAAISPIDGSLLGDVVQIEESEQ
                     QFELESAGYFVRKLPKEPQKNIVYQAYVLFSERLKLRNGSVKNLRLTLEKNMPIGSGL
                     GSSACSIVAALVALNKFHDEPFSKMELLEMMGELEGRISGSIHYDNVAPCYLGGLQLM
                     TQSLGNICQPLPFFDEWYWVLAYPGVEVSTAEARAILPKSYTRQDMIQQARYLGSFVH
                     ACHTHQDILAATMMKDLIAEPYREDLLPNFPAVRQGCKDLGALAVGISGSGPTMFAIA
                     PDLEHAQRLVSYLEKEYLQNNEGFIHICKVDNQGARELK"
     gene            complement(4882..7338)
                     /gene="thrA"
                     /locus_tag="PXE92_002076"
     CDS             complement(4882..7338)
                     /gene="thrA"
                     /locus_tag="PXE92_002076"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HDL5761289.1"
                     /translation="MRVLKFGGTSLANPERFMQAAEIIEKAHLADQAAGVLSAPAKIT
                     NHLVAIVDKAIAGESFQSNLSEATEIFHNIINGLYATNNHFAKEALLALVEAELNQIQ
                     QVAAEAAQTKSLSDKIAATIHCRGEKLSIAMMQAWFEAKGYEVTRIDPVEKLLAHGSY
                     LESSVDIAESTKRVDAGSIPKKNIVLMAGFTAGNEQGELVLLGRNGSDYSAACLAACL
                     KADVCEIWTDVDGVYTCDPRLVPDAVCLETMSYQEAMELSYFGAKVIHPRTIGPLVPL
                     NIPCLIKNTGNPDGKGTLIDGNVANDNLKVKGITNLDNVAMFNVSGSGMQGMVGMAAR
                     VFSTMSKAGISVILITQSSSEYSISFCVPAKSAEKALAALNTEFAQELSENLLDPIDI
                     IKDLSIVSVVGDGMRTAKGIAARFFSALAQANISIVAIAQGSSERSISAVVPLNKAIE
                     AVKATHKSLFNSKRVVDMFLVGVGGVGSELIEQVKQQKEFLAKKDIEIRVCALANSDK
                     MLLNENGLNLDNWKEDLEKAIQPSDFDVLLSFIKFHHVVNPVFVDCTSAQSVANLYAR
                     ALKEGFHVVTPNKKANTSGYDYYLEMRENARQSQHKFLYETNVGAGLPVIENLQNLLA
                     AGDEVEKFEGILSGSLSFIFGKLEEGLTLSQATLIAKEKGFTEPDPRDDLSGADVARK
                     LLILVRETGLPLEFEDIEIEGVLPKGFSEGMSRDEFLQALPSLDEEFSKRVEAAKAEG
                     KVLRYVGSITGDKCRVAIEAVDENHPLYKVKDGENALAFLTRYYNPIPLLLRGYGAGN
                     SVTAAGIFADILRTLQGGVN"
BASE COUNT         2129 a         1604 c         1627 g         2232 t
ORIGIN      
        1 aacaaaaaga tgatgaagaa aatttaattt cagaagtgcc ggttgctttg gtatataacg
       61 gtatttctca tactgtaatg atggcaacac cggctaattt ggaggacttc gctttaggat
      121 tctcattggc ggaagggatt ttaaatgccc catcggaatt atatggttta gatgtaattg
      181 aacaagaaaa tggagtagaa attcagcttg aaatatcgag ccgccaattt gttgcattaa
      241 aagataaacg ccgctcaatg gcaggcagaa caggttgcgg tatttgcggt gtagagcaat
      301 tagagcaggt taatcaaagt tgcaaaattg ttaagaaaaa taaccgcttg cagaacgtca
      361 atccactgat tttagaggat tgtttattac agctagaaaa tgctcaattc ttatcgaaag
      421 aaaccggtgc aagccacgcc gctgcatttt ttaccccgga tggaaaactg cttgccattc
      481 gtgaagatgt gggcagacac gtggcgttgg ataaattaat cggttggtat gctaaagctg
      541 attttccgat tggatttgtg tttgtaacca gtcgtgccag ctttgaaatg gtgcagaaat
      601 gcttagccgt tggcattgaa atgttgtgtg ccatctcagc gaccactgaa atggcagtga
      661 atatggctcg tgaaaatcaa tttaccttac ttgcttttgc ccgcaaaggc aaagcgacca
      721 tttatgcagg agaagagaga ctcgctctta attgataatg gaaatagccc ttttattagc
      781 cgataaaatt ctacaattaa ccctgatggt gctgctcggc tacctcatcg ttaaaactaa
      841 attactcaaa tcggagcaca gttatccgat ttcggttatc ggactttaca ttatcagccc
      901 ggcaatgctg attactgctt ttcaagtaga ttacaccacc gaaatactaa acggcttgta
      961 tctggcattt ttaatctccg tcttattaaa cggcttgtta attctgcttg gttggctgct
     1021 caaaagagcg ttgaaattag acaacataga acaagccacc gctatttatt ccaactccgg
     1081 caacttaatt attccgattg ttgcctccct gttcggcaat gaatgggtga tttattcaac
     1141 ggcttttatt gtggtgcaaa atgtgttgtt ttggtctcac ttacggctgc tgatttgtgg
     1201 caaaggcaat gtgccgttta gaaagatgat ctttaatatc aacattattg cgattgtgat
     1261 tggtatgatg ttgtttttgc tacatatcaa actgcccgct acgcttgcaa acacgctctc
     1321 aactttaggg catatgttag ggcctttagc aatgcttgtg gcagggatgt taattgcagc
     1381 aattccattt aaagagatta ttaccgataa acgcatttac ttggtggctt ttctccgctt
     1441 gatttttatt ccgctgattt tgttagcggt gattaaactc ggcggttttg cgagctggat
     1501 agagaatgga aaaacggtgg taatgattac attcttagcc accatcagcc cttctgctgc
     1561 aacggcgacc caaatggcgg tggcttacgg gcaagatgcc aaaaaagcca gtgcgattta
     1621 tggcgtaacc actttacttt gtgtgtttac aatgccgctg attatttggc tgtatcaatt
     1681 tctataaaaa caagcagtcg atttctgcta cttttttgca acgctgagaa atgcaaaaaa
     1741 ttgtgaaaaa tcaaccgctt gtaggctaat ttgcggaatt aggcaacgct tacagactca
     1801 atcaccacat cttcaaccgg cacgtcttgg tggaagcctt tattgccggt ttttacgcct
     1861 ttgattttat cgaccacgtc cataccttca accacttcgc caaatactgc atagccccaa
     1921 tcttgcacta cacttctgcc gaacatctct tttgagcgat aatctaagaa agtattatcc
     1981 gccacattaa tgaaaaactg tgacgaagca gaatgcggat cagaagtgcg agccattgcg
     2041 attgtgccac gcttgttgct taaaccgttg ttcgcttcgt tttgaatcgg atcttttgtc
     2101 ggtttttcag ccatacctgc cgtcattccg ccaccttgaa tcataaagcc gtcaatcaca
     2161 cggtggaaaa tcgtgccgtt ataaaaccct tctttagcgt aatcttcaaa gtttttagcg
     2221 gtaatcgggg ctttttcaaa gtttaattcg attttaatgt caccgaaatt ggtatgtaat
     2281 gtaatcattc tttgttcctt tataaataaa aatggaatgg aaaataaatt tcgctcgcta
     2341 ttattaaaaa gtttacgcca aattgcaaaa aaatctcaaa atcagaccgc ttattcgcta
     2401 tacttagccc catttgttac tgaatgttac acaagaggac tttatgctca aaatttataa
     2461 caccttaaaa cgtgaaaaag aagaatttaa accgattaac ccaaatcagg tgggaatgta
     2521 cgtctgtggc gtcacggttt acgatctttg tcattttggg cacggtcgca cttttgtctc
     2581 tttcgatgtg attgcccgtt atttacgtta ttcaggctac aatttacgct atgtgcgtaa
     2641 cattaccgat gtggacgaca aaatcatcaa acgtgcgtta gaaaataacg aaacttgcga
     2701 tgaattagtg gatagaatga ttgctgaaat gcacaaagat tttgatgcgt taaacattct
     2761 tcgcccggac gttgagccac gagccaccaa gcatattcct gaaattattg cgatggtaga
     2821 aaaactgatt cacaacggac acgcttatgt cgcagccgat ggcgatgtga tgtttgatgt
     2881 ggaatcgttc cagaaatatg gtgcattatc ccgccaaaat ttagagcaac tacaagccgg
     2941 tgcaagggtt gaaattaaat ccatcaagaa aaacccgatg gattttgtct tgtggaaaat
     3001 gtcgaaagcc ggtgagccaa gctgggaaag cccgtggggc aatggcagac cgggctggca
     3061 tattgaatgt tcggcaatga atagcaaaga gttgggcgaa cattttgata ttcacggcgg
     3121 tggctcggat ttaatgttcc cgcatcacga aaacgaaatt gcacaatctt gctgtgctca
     3181 cggtggcgat tatgtcaatt attggttaca cactggaatg cttaccattg ataaagaaaa
     3241 aatgtcgaaa tctttgggca atttcttcag cattcgccat atgttaggct tatacgatgc
     3301 cgaatcgtta cgttatttct tcttaaccgc tcattaccgt tcgttattag attacagcat
     3361 tgacaacctt gatttagccc gttcggctct tgagcgttta tataccgctc tgcgtggttg
     3421 tgatgtgtcg ggcgaagcca tcggagaaca ctatgtagaa gcctttaaaa ccgcaatgga
     3481 cgatgatttc aacaccccgg gggcattagc ggtgttattt gaaattgccc gtgagttgaa
     3541 caaactcaaa accgaagata tggcaaaagc caacggttta gccgttcgtt taaaagagtt
     3601 agccggcgtg ctaggcttac tggaacaaga ccccgatgcg tttttaaaag gtgatgcgaa
     3661 tgacgatgaa acggcagaaa tcgaagcctt aatcaaacaa cgcaacgaag ccaaagcggc
     3721 taaaaactgg gcggttgccg atgaagtgcg agataagctc aaagcgataa atattgtcct
     3781 cgaagacacc ccaaacggca caatttggcg taaggcatag ccttcgattg tttataagtg
     3841 atagactttt caaaaaatta atcaaaaagg gctgctccaa gtggtattgg agtcagtcct
     3901 ttaagttatt tagtgatatg gttgttcgag agggctattt cagctctctt gctccttgat
     3961 tatcgacttt acagatatga ataaagcctt cgttgttttg cagatattct ttctctaaat
     4021 agctcactaa acgttgagcg tgttcgagat caggggctat cgcaaacatt gtcggaccgg
     4081 aacctgaaat accaaccgct aacgcaccta agtctttaca gccttgacga acagccggaa
     4141 agttcggcag taaatcttca cggtaaggct cagcaattag gtctttcatc attgtagcag
     4201 ccaagatatc ttgatgtgta tggcaagcat ggacgaaaga tcctaagtag cgggcttgct
     4261 gaatcatatc ttgacgagta tagcttttcg gcaaaatagc acgggcttcg gcggttgata
     4321 cttccacgcc cgggtaggca agcacccaat accattcatc aaagaatggc agaggttggc
     4381 aaatattgcc gagcgattgt gtcattaatt gcaggccacc taaatagcaa ggggcaacgt
     4441 tgtcgtagtg gattgagcct gaaattctgc cttccaattc gcccatcatt tccagtaatt
     4501 ccattttgga gaacggttca tcgtggaatt tattgagtgc cactaatgct gcaacaatcg
     4561 agcaggcact tgagcctagc cctgagccaa tcggcatatt tttttcaagt gttaagcgta
     4621 aattttttac actgccgtta cgtaatttca agcgttcgct aaatagcaca taggcttgat
     4681 agacaatgtt tttttgtggt tctttgggca atttacgtac aaaataacct gcactttcta
     4741 gctcaaattg ttgttcactc tcttcaattt gaactacatc gccgagcaaa gagccgtcaa
     4801 tcggggagat tgcagcgcct aatgagtcaa aacccacact aatatttgca cttgaagctg
     4861 gggcataaat tcgtaacgcc attagttcac tcctccttgt aaagtacgca gaatatctgc
     4921 aaagataccg gcagcggtta cgctattgcc cgcaccatac ccacgcaata ataatggaat
     4981 agggttgtag taacgtgtga gaaaagcaag ggcattttcg ccgtctttaa ctttgtaaag
     5041 tgggtggttt tcgtccacgg cttcaatggc aactcggcat ttatcacctg tgatcgagcc
     5101 cacataacgc aacactttgc cttcagcctt ggcagcttct acacgcttgc tgaattcttc
     5161 gtctaaagac ggtagagctt gtaaaaactc atcacgactc attccttccg agaagccttt
     5221 tggcaatacg ccttcaattt caatatcttc aaattcaagc ggtaagccgg tttcacgaac
     5281 aagaattaag agtttacgag caacatctgc accggataaa tcatctcgtg gatctggctc
     5341 ggtaaagcct ttttctttgg cgattaaagt tgcttgcgaa agggttaaac cttcttctaa
     5401 tttgccgaaa atgaaagaga gcgagccgga taaaatccct tcaaatttct ctacttcgtc
     5461 accggcagct aataggtttt gtaagttttc aattaccggt aaacctgccc ctacattagt
     5521 ttcgtagagg aatttgtgct ggctttggcg ggcgttttca cgcatttcta agtagtaatc
     5581 gtaacctgat gtattggctt ttttgtttgg tgttaccacg tggaagccct cttttaaggc
     5641 tcgtgcgtac aggttcgcca ccgattgtgc cgaagtgcaa tctacaaata ctgggtttac
     5701 cacgtggtgg aatttgatga aagaaagcaa tacatcaaag tctgacggct gaattgcttt
     5761 ttctaaatct tctttccagt tgtctaaatt taagccgttt tcgttgagta acattttatc
     5821 tgaattagct aaagcacaca cacggatctc aatatccttc tttgccaaaa actccttttg
     5881 ttgtttgact tgctcgatga gttcgctacc cacaccgcct acacccacta aaaacatatc
     5941 caccacacgt ttactgttaa atagcgattt gtgagttgct tttactgctt caatcgcttt
     6001 gtttaacggc acgacagcag aaatggaacg ctcagatgaa ccctgtgcaa ttgccacaat
     6061 actgatgttg gcttgggcta gggcagagaa gaagcgagcc gcaattcctt tggcggtacg
     6121 cataccatca cccactaccg aaacaatgga taaatcttta ataatatcaa tcgggtcaag
     6181 taagttttca gataactctt gtgcaaattc agtatttaga gccgctaacg ctttttctgc
     6241 cgattttgcc ggcacgcaga agctgatgct atattctgat gatgattggg taattaaaat
     6301 caccgaaata ccggcttttg acatcgtcga gaacacacgg gcagccatgc ccaccattcc
     6361 ctgcattcct gaacctgaaa cgttgaacat cgccacgtta tcaaggttgg taatcccttt
     6421 tactttgaga ttatcgtttg ccacattgcc atcaattaat gtgccttttc cgtccggatt
     6481 gccggtattt ttgattaaac aaggaatatt gagcggcact aatggcccga tggtgcgagg
     6541 gtggatcact ttcgccccaa agtaggaaag ctccattgcc tcttgatagc tcattgtttc
     6601 taagcatact gcatcaggca ccaaacgagg gtcgcaggtg taaacgccat ctacgtccgt
     6661 ccagatttca caaacatcgg cttttaaaca cgctgccaaa caagcggcag aataatctga
     6721 accgttacgc cctaataaca ccagttcgcc ttgctcatta cctgcggtaa aaccagccat
     6781 tagcacgata tttttctttg gaattgaacc tgcatcaact cgcttggtgg attcggcaat
     6841 atcgaccgaa gattccaaat agctgccgtg agccaataat ttttcaacag ggtcgatacg
     6901 agtgacttca tagccttttg cctcgaacca cgcttgcatc atcgcaatag agagtttttc
     6961 accacggcag tgaatagtgg cagcaatttt atctgacaac gatttagttt gagctgcttc
     7021 tgcagccact tgctgaattt ggtttaattc cgcttccact aaggctaaca gtgcttcttt
     7081 agcaaagtga ttatttgtag catataagcc gttaatgatg ttgtggaaaa tctcggtagc
     7141 ttcagaaagg ttagattgaa atgattcacc ggcaatcgct ttatctacaa tagcgacaag
     7201 atgattggta attttggctg gggcggataa tacgccggca gcttgatctg ccaaatgagc
     7261 tttctcgata atctctgccg cttgcataaa gcgttcaggg ttggcaagag aagtgcctcc
     7321 aaatttaaga actcgcatag ttactcctga taaattattt gtaaattttt atacaaaaaa
     7381 aaccgcttgt agcgggtttt cggtttattc tttcattatt tcagccaatt aaaacccgca
     7441 ctatgttggt gacataatgg tggtaataat cgttgtcatc atattaaaac aattcattgg
     7501 cggaatctcg gtcaagagag tgaataatgg ttcaagaatg cgtgaaaata atgcctttgt
     7561 caatgggctt aacgctgttt ttcaccacat tt
//
LOCUS       DANMBQ010000115         7553 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.116, whole genome shotgun sequence.
ACCESSION   DANMBQ010000115 DANMBQ010000000
VERSION     DANMBQ010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7553)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7553)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7553
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.116"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            108..626
                     /locus_tag="PXE92_002077"
     CDS             108..626
                     /locus_tag="PXE92_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein"
                     /protein_id="HDL5761290.1"
                     /translation="MQKKLFIAQIKQNLSELNVFSTDNIFLNSPYFSQQTGLVSVFIA
                     EIEKTVELLLNQTEVLYSEFYAEKLVKQVDALKNAVEKIQSKPESAQFHSSYQFSPNI
                     HRLAPNKRLQEYRKALRALNEKISWLVEQNLNTQNEATKQTLQNQITETEYRKMKCLK
                     AIEDLEQELLFK"
     gene            complement(630..703)
                     /locus_tag="PXE92_002078"
     tRNA            complement(630..703)
                     /locus_tag="PXE92_002078"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(669..671),aa:Cys,seq:gca)
     gene            complement(719..794)
                     /locus_tag="PXE92_002079"
     tRNA            complement(719..794)
                     /locus_tag="PXE92_002079"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(759..761),aa:Gly,seq:gcc)
     gene            complement(1004..2428)
                     /gene="lpdA"
                     /locus_tag="PXE92_002080"
     CDS             complement(1004..2428)
                     /gene="lpdA"
                     /locus_tag="PXE92_002080"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HDL5761291.1"
                     /translation="MSKEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGI
                     CLNVGCIPSKALLHVAKVIEEAKNAVHNGVTFGEPTIDLDQVRAGKEAVVSKLTGGLA
                     GMAKARKVTVVEGLAAFTGPNTLVARDRDGNPTTITFDNAIIAAGSRPIQLPFIPHED
                     PRVWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKD
                     VVAIYTKQIEKKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPN
                     GKLIDAGKAGVEVDERGFIRVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGMKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASEC
                     SEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNAKAKKR"
     gene            complement(2628..4538)
                     /gene="aceF"
                     /locus_tag="PXE92_002081"
     CDS             complement(2628..4538)
                     /gene="aceF"
                     /locus_tag="PXE92_002081"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HDL5761292.1"
                     /translation="MSKQINVPDIGSDEVSVTEVMVKVGDTISVDQSIINVEGDKASM
                     EVPAPEAGVVKEVLVKVGDKVSTGSPMLILESADAAPAQEAPKAEAAPAAPVATTSAV
                     VEVNVPDIGGDEVNVTEIMVKVGDSVEVDQSIINVEGDKASMEVPAPVAGVVKEILIN
                     VGDKVSTGKLIMKFETASAATAQSTPVAEAAPAQASASAIKDVNVPDIGGDEVNVTEI
                     MVKVGDSVSEEQSLITVEGDKASMEVPAPFAGVVKEILVKSGDKVSTGSLIMKFEVAG
                     AAPAPAAAQAASAPAPAPQAAAPAKADAAPAGQNQSGLSQEQVVASAGYAHATPVIRR
                     LAREFGVNLDKVKGTGRKGRIVKEDIQAYVKTAVQVFEKQGGTAAAATGAANGAGLGL
                     LPWPKVDFSKFGEVEEVELSRINKISGANLHRNWVMIPHVTHFDRTDITELENFRKEQ
                     NKEAEKRKLDVKITPVVFIMKAVASALEAFPRFNSSISEDAQRLTLKKYINIGVAVDT
                     PNGLVVPVFKNVNKKGIIELSRELMEVSKKAREGKLTASDMQGGCFTISSLGGIGTTH
                     FTPIVNAPEVAILGVSKSEMQPIWNGKEFEPRLMLPLSLSFDHRVIDGADGARFLSYI
                     NSVLADIRRLVM"
     gene            complement(4742..7399)
                     /gene="aceE"
                     /locus_tag="PXE92_002082"
     CDS             complement(4742..7399)
                     /gene="aceE"
                     /locus_tag="PXE92_002082"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005628834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HDL5761293.1"
                     /translation="MSENLRNDVDPIETQDWLASLDSLIREEGLERAQFIIEQVISQA
                     RAGGVALPTGVTTDYVNTIPVSEQPAYPGDHKIERRIRSAVRWNAIAAVLRSQKKDLD
                     LGGHISTFQSAATMYEVCFNHFFKAPTEKDGGDLVFFQGHAAPGMYGRAFLEGRITAE
                     QMDNFRQEAFTDGLSSYPHPKLMPEFWQFSTVSMGLGPVNAIYQARFLKYLENRGLKD
                     TSAQKVYAFLGDGEMDEIESKGALSFAGREKLNNLIFTISCNLQRLDGPVNGNGKIVQ
                     ELEALFTGCGWEVIKVLWGSGWDKLLEKDTSGKLKQLMMEVLDGDYLTFKSKNGAYVR
                     EHFFGRYPETAALVADMTDDEIWALRRGAHDSEKLYAAYAKAQKSDKPVVILAHQVKG
                     YRIPEAESKNTAHQSKKMSLDSLKGFRDYFELPLTDEQVESLEYVRFPEGSEEYNYLH
                     GQRKALNGYVPVRKPKFTVDFKVPELSEFQALLDEQPRGISTTMAFSRVLNTLLKDKN
                     IGQQIVPIIADEARTFGMEGLFRQIGIYNPHGQNYVPSDRDLVAYYREAKDGQVLQEG
                     INELGATASWVAAATSYSVSNLPMIPFFIYYSMFGFQRVGDMMWLAGDQLARGFMIGG
                     TSGRTTLNGEGLQHEDGHSHIQAGVIPNCVTYDPAFAFEVAVIVQDGIRRMYGENQED
                     IFYYITTLNEITEQPAMPAGAEEGIRKGLYKFETVEGKGKGHVQLLSSGAIMRHVRAA
                     AQILANDYGITADVFSAPSFNELGRDGADVARWNLLHPTETPRVPYVAQVLQDLPTVA
                     STDYMKMYAEQIRAYVPSKHYHVLGTDGFGRSDSRANLREHFEVDERYVVVAALAQLA
                     KEGTVENKVVAEAITKFGLNVDRINPLYA"
BASE COUNT         2164 a         1697 c         1403 g         2289 t
ORIGIN      
        1 taagaaatta gtaaaaatca accgcttgta cgcaaagtgt tttgctttaa aatagaagtt
       61 atatgaaata aaattcactt aaattttctt tattgataac atcaaccatg caaaaaaaac
      121 tttttatcgc ccaaataaaa caaaacctct cggaattaaa tgtattttca acggataata
      181 tttttctgaa ttcaccctat ttctcacagc aaaccggttt ggtgagtgtg ttcattgctg
      241 aaattgaaaa aacagttgag ctattattga accaaactga ggtgttatat agtgaatttt
      301 acgctgaaaa attggttaaa caagttgatg cattaaagaa tgccgtagaa aaaatccaaa
      361 gtaagccaga atcagctcaa ttccattctt cctatcaatt ttctccaaat attcatcgtt
      421 tagcgcccaa caaacgctta caagaatacc gtaaagcgtt acgtgcattg aacgagaaaa
      481 ttagctggtt agttgagcaa aatttaaata cgcaaaatga agcaactaaa caaaccctgc
      541 aaaatcaaat tacagagaca gaatatcgca aaatgaaatg tttaaaagca attgaagatt
      601 tagaacaaga gttgctattt aaatagtgat ggaggcgtgt cccggagtcg aaccgagcta
      661 catggatttg caatccagtg cataaccgct ttgctaacac gccataagat ttggaaattg
      721 gagcgggaaa cgaggctcga actcgcgacc ccgaccttgg caaggtcgtg ctctaccaac
      781 tgagctattc ccgcatctga attcccacaa cattgcgctg tggaacgagg tgcattttac
      841 ggatttatca ttttatgtca atgctaaatt taacattcta gattcaaatg ctgaaaaaaa
      901 actcactatt caatagttta gttttaaaaa taatcaagcg gttgtatttt gcaaaaaatt
      961 tacaaaatac aaccgcttat tttttagaga ttaaataatc tgattaacgc tttttggctt
     1021 tcgcatttgg taagtctgta attgaacctt caaatacttc tgccgctaat cctaccgatt
     1081 cgtgtaacgt tgggtgagca tgaatggtta atgcgatatc ttcagcatca cagcccattt
     1141 cgattgcaag accgatttcg cctaataatt cgccaccatt gctaccaaca atcgcaccac
     1201 ctaatacacg gtgagtatct ttatcaaaaa ttaacttggt cataccttct gagcattcag
     1261 aagcaatcgc acgacctgaa gcagcccaag ggaatttcgc cacttcgtag ttcaagcctt
     1321 cttgtttaca ctctttctca gttttaccaa cccaagccac ttctggttca gtataagcga
     1381 tggacggaat gactttcgga tcgaagtaat gtttcattcc tgcaatcact tctgctgcca
     1441 cgtgtccctc gtgtacacct ttgtgagcta acatcggctg gccgacaata tcaccaatag
     1501 caaagatgtg tggcacattg gtacgcattt gtttatctac acgaataaag ccacgctcat
     1561 ctacttccac tccagcttta ccggcatcaa ttaatttacc gtttggcaca cgtccgatag
     1621 cgactaatac cgcatcataa cgtttagtat cgttgcaagc cttaccttcc attgatacat
     1681 agataccgtc atctttagct tctactgcgg ttactttggt ttcaagcatt agcttgaatt
     1741 ttttctcgat ttgtttggtg taaatcgcta caacatcttt atctgcagca ggaattactt
     1801 ggtcgaacat ttcaaccact tccacttctg aaccaagcgc gttatatacc gttcccattt
     1861 ctaaaccgat aataccacca cccataataa ggagtttttt cggtacttct tttaatttaa
     1921 gagcatcggt tgaatcccaa actcgtgggt cttcgtgtgg aataaatggt agttgaatcg
     1981 gacgagaacc tgctgcgata atcgcattat cgaacgtgat agttgtagga ttgccgtcac
     2041 gatcacgagc gactaacgta ttcggaccag taaatgcagc caagccttct actactgtca
     2101 ctttacgagc cttagccatt cctgctaagc caccggttaa ttttgaaaca acggcttctt
     2161 taccagcacg tacctgatct aaatcaatcg ttggctcacc aaaggtcaca ccgttgtgta
     2221 ctgcattttt agcttcttca attacttttg caacgtgtaa taatgcttta gaagggatac
     2281 aacctacgtt taagcaaata ccacctaagg ttgaataacg ctcaacaatt actgtttcta
     2341 agcctaagtc ggcacaacgg aatgccgctg agtaacctgc tggacctgca ccaagtacga
     2401 caacttgggt tttaatttct ttgctcatag tttttcctct ttttattccc cccctttagc
     2461 aaagaggggt aagggagatt tggcagaata taaagcgaag tgagagagca atcaatcaaa
     2521 cacaaatttc taccaaataa tttattctct tcgtaaatta cgtctatcaa atctccccct
     2581 acccctcttt tctaaagagg gactttttta ggaggagctt taccgaatta catcactaaa
     2641 cgacgaatat ctgccaacac gctattaata tagcttaaga atctcgcacc atcagcacca
     2701 tcgatcacac ggtggtcgaa tgataatgaa agcggaagca ttaagcgtgg ttcaaactct
     2761 ttgccattcc aaatcggttg catttcagat ttagacacac ctaaaatagc cacttccggt
     2821 gcattcacga ttggcgtaaa gtgcgttgta ccaataccgc ctaaacttga aattgtgaaa
     2881 cagccacctt gcatatcaga tgctgtcaat ttaccttcac gggctttttt cgagacttcc
     2941 attaattcgc gagaaagttc gataatgcct tttttgttca catttttgaa caccggcacc
     3001 actaaaccgt ttggcgtatc aaccgcaacc ccgatattga tgtatttttt caaggttaaa
     3061 cgttgtgcat cttcagaaat tgagctgttg aaacgaggga aggcttctaa tgcacttgcc
     3121 actgctttca taatgaagac cacaggggta attttcacgt ctaatttacg tttttccgct
     3181 tctttatttt gctctttacg gaagttttct aactcggtaa tgtctgtgcg atcgaaatgt
     3241 gtaacgtgag gaatcattac ccagttacgg tgtaagttcg caccggaaat cttattgata
     3301 cggcttaatt caacttcttc aacttcacca aacttgctga aatctacttt cggccacggt
     3361 aataaaccta agcctgcacc gtttgccgca cctgttgctg ccgctgctgt tccgccttgt
     3421 ttttcaaata cttgaacagc cgttttaacg tatgcttgaa tatcttcttt aacgatacgg
     3481 cctttacgac ctgtaccttt tactttgtct aggtttacac caaactcacg agctaaacgg
     3541 cgaattaccg gtgttgcgtg tgcatagcca gctgaagcca ccacttgttc ttggcttaaa
     3601 cctgattggt tttgacctgc cggagctgcg tcagctttcg ccggagctgc tgcttgtgga
     3661 gcaggagcag gagctgaagc cgcttgagca gccgccggag ccggtgccgc acccgctact
     3721 tcaaatttca taattaatga accggttgaa actttatcac ctgatttcac taaaatttct
     3781 ttcaccacac cggcaaatgg agccggaact tccattgaag ctttatcacc ttcaaccgtg
     3841 attaaagatt gttcttctga aacagaatca cccactttaa ccataatttc agttacgttt
     3901 acttcatcac caccgatgtc cggtacattt acatctttaa tcgctgatgc cgaagcttga
     3961 gctggagcag cttccgcaac cggtgtagat tgtgctgtag ctgcggaagc cgtttcaaat
     4021 ttcataatca atttaccagt tgaaactttg tcacccacat tgattaagat ttcttttact
     4081 acgccggcaa ccggtgcagg cacttccatt gaggctttat caccttcaac gttgatgata
     4141 gattgatcca cttcaacgct atcacctact ttaaccataa tttcggttac gttaacttca
     4201 tcgccaccga tatcaggtac atttacttca acaacggctg aagttgttgc tactggagca
     4261 gcaggagctg cttctgcttt tggtgcttct tgagcaggag cagcatctgc tgactctaaa
     4321 attaacattg gtgaaccggt tgaaacttta tcacccactt tcactaaaac ttcttttacc
     4381 acacctgctt caggagccgg cacttccata gaggctttat cgccttctac gttaataatt
     4441 gattgatcta ctgaaatagt atcaccaact tttaccatca cttcagtcac actgacttca
     4501 tccgaaccga tgtccggcac attaatttgt tttgacattt tgaaatcctt cttgagttac
     4561 cccctctccc attgtgggag ggacagattt ttctttgtaa gaagaaaaat cagggagaag
     4621 ggaatgcaag cggttgattt tctcaacatt tttgcaaata aaactaatac cctctctgct
     4681 aaaagtttct aaacgaaacc tttagctgtc tctctcccat caagggagag agtattagaa
     4741 attacgcata taatgggtta atacgatcta catttaagcc gaatttagta atagcttccg
     4801 caaccacttt gttttcaact gtaccttctt tcgctaattg agcgagggct gcaactacta
     4861 cataacgctc atcaacttcg aagtgttcac gtaagtttgc acggctgtct gaacgaccga
     4921 aaccgtctgt acctaacacg tgatagtgtt tacttggtac ataagcacgg atttgctctg
     4981 cgtacatttt catatagtcg gttgaagcaa cagtcggtaa atcttgtaac acttgagcaa
     5041 cgtacggtac acgtggtgtt tcagttgggt gtaataagtt ccaacgagcc acatctgctc
     5101 catcacgacc taattcattg aatgatggtg ctgagaatac atctgctgta atgccgtagt
     5161 cattcgcgag aatttgtgca gctgcacgca cgtgacgcat aattgcacct gagcttaata
     5221 attgtacgtg acctttacct ttaccctcaa cggtttcaaa tttatataaa cctttacgga
     5281 taccttcttc cgcacctgcc ggcattgccg gctgttcggt aatttcattt aaggtagtaa
     5341 tgtagtagaa gatatcttct tggttttcac catacatacg acgaataccg tcttgaacaa
     5401 taaccgcaac ctcaaaggca aatgcagggt cataagtgac gcagttcggg attacacctg
     5461 cttgaatatg gctatgacca tcttcgtgtt gtaaaccttc accgtttaat gttgtacgac
     5521 ctgaagtacc accaatcata aagccacgag ctaattggtc accggctaac cacatcatat
     5581 cgcctacacg ttggaaacca aacattgagt agtagatgaa gaatgggatc atcggtaagt
     5641 tgctaacaga ataagaagtc gctgctgcca cccaagaggc tgttgcacct aactcattga
     5701 taccttcttg taacacttgg ccatcttttg cttcacggta gtaagctact aaatcacggt
     5761 ctgacggtac atagttttga ccatgtgggt tataaatacc gatttgacgg aataaacctt
     5821 ccataccgaa agtacgggct tcgtccgcaa taataggtac gatttgctga ccgatatttt
     5881 tatctttcaa taaagtattc aatacacgag agaacgccat tgtggttgaa ataccacgtg
     5941 gttgctcatc caataatgct tggaattcgc ttaattcagg cactttgaaa tcaaccgtaa
     6001 atttcggttt acgtacaggc acataaccgt ttaaggcttt acgttgtccg tgtaagtagt
     6061 tgtactcttc agaaccttca gggaatctta catactctag gctttctact tgctcatcgg
     6121 ttaatggtag ctcgaagtag tcacggaagc cttttaagct gtctaatgac atttttttcg
     6181 attggtgagc agtattttta ctttccgctt caggaatacg gtagcctttc acttggtgag
     6241 ctaaaattac aactggtttg tccgattttt gtgcttttgc ataggctgca taaagttttt
     6301 cagaatcgtg tgcaccacgg cgtaatgccc aaatttcatc gtctgtcata tcagcaacta
     6361 atgctgcagt ttcagggtaa cgaccgaaga agtgttcacg aacgtaagca ccatttttgg
     6421 atttgaaggt taaatagtca ccatcaagca cttccatcat taactgttta agtttgcctg
     6481 aagtatcttt ttcaagcagt ttatcccaac cactacccca taacacttta atcacttccc
     6541 agccacaacc ggtaaagagt gcttctaatt cttgcacgat tttgccgtta ccgttaaccg
     6601 gaccgtctaa acgttgtaag ttacagctaa tagtgaagat taagttattt aatttttcac
     6661 gaccggcgaa tgataatgca cctttagatt cgatttcatc catttcgcca tcgcctaaga
     6721 atgcatatac tttttgagcc gaagtatctt ttagaccacg gttttctaaa tattttaaga
     6781 aacgagcttg gtaaatagca tttaccggtc ctaaacccat agatacggta gagaattgcc
     6841 aaaattcagg cattaattta gggtgtgggt aagaagataa accgtctgta aatgcttctt
     6901 gacggaagtt atccatttgt tctgcggtaa tacgaccttc taagaacgca cgaccataca
     6961 tacccggtgc tgcgtggcct tggaagaaca ctaaatcacc accatctttt tcggttggtg
     7021 ctttgaaaaa gtggttaaaa cacacttcat acatagttgc cgcagattgg aaagttgaaa
     7081 tatgaccacc taagtcaaga tctttcttct ggctacgaag tactgccgca atcgcattcc
     7141 aacgtaccgc agaacgaata cgacgttcga ttttatgatc acccggataa gctggctgct
     7201 cggaaacagg gatagtattg acataatctg ttgttacgcc tgttggtaat gccacgccac
     7261 ctgcacgagc ttggctaata acttgttcaa tgataaattg agcgcgctct aaaccttctt
     7321 cacgaattaa tgaatcgagt gatgctaacc aatcctgagt ttcgattgga tctacgtcat
     7381 ttcttaagtt ctctgacata gtattcttcc ttataaatta acgattgagg tgataaataa
     7441 caaaatttta acaaattttg tttgtttggt gatttttaga ccaattctta tcgaaaaaat
     7501 ttcagtaaaa caacaatttc cgaattaaac ctctcttgag gcatatacta aaa
//
LOCUS       DANMBQ010000116         7549 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.117, whole genome shotgun sequence.
ACCESSION   DANMBQ010000116 DANMBQ010000000
VERSION     DANMBQ010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7549
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.117"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            25..2172
                     /locus_tag="PXE92_002083"
     CDS             25..2172
                     /locus_tag="PXE92_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5761294.1"
                     /translation="MKRLRYSYLALILGSALPLSAYADGYLSNDNIRQFDARFNFFLA
                     NPLPAPIAKADGRGEAIENLVVKYASDYLNDIYLKEDVIRFRRWQWQDLYTSLDLKTK
                     QKPDYLNTYRLQAEAYFINKQYQEALSQLDQILRRNPNDVHAMAMSVVASRVLENPNT
                     EAERLLALYQISPSIAQKVQQYLHFTDTMLAASYGSEPQTTMIPDTIAVFGQSPNPDG
                     TPSKGLLQRLEKTKEMAEKFPNAKIILSGGPVRYIYAEADVMKKWLIENGVDESRLLL
                     DDVARDTPGNAVGIIDFMKEYGGRKVLGIGTILHLPRAMSVLKSYADSIGYELEIDSA
                     GGGSPPNEKNKKGEALYTFVNVARAMGLFTLGDFENLLAKEQAEKEQREALEKAQQNY
                     LEKLVAERDQAVKNAENSANELEVARQALETAKQAHQQAEEELNKELSKTQEQLKQST
                     EALSRLIIKQNNPFSEHYVVQLNLMEQATYDLYRRLAEIEHTQDWNLWLSDSLSKYRL
                     KNRSTEDYHLLHIGLDHQVSHNWSIGGVFGISQGQIENRTHKVKGTSAGIYAGYRPTS
                     GLFWTNFFNYSHFTNQSGVTKRDNNAYSLSSEIGRNIVMSHQWQITPKLQLGWAKAGS
                     ARMFWAGTGLRLGKVIELNAIKLKPYADISYRFRNRHIDTLDSLSDRHRNVISIGIQA
                     VGNRHYFAIEGSMLHGDALKRSYGLHANYHYQW"
     gene            2185..3303
                     /locus_tag="PXE92_002084"
     CDS             2185..3303
                     /locus_tag="PXE92_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5761295.1"
                     /translation="MKKIKTTLSALALSLSLISVNSWAIPADYLSQDNISQYDKAFNF
                     VLAKVLPAPKGKEDGRGAPIEHLVIQYAPDYVDDPYLKEDVLNFRRWYWQAMYASLDQ
                     KVKEKPTYLNTYRLQAEAYFVNKEYREALSQLDQILRQNPRDIHALAMTVLASRVLED
                     TEQETARLSALKQLAPEVAQRMTDFFAFTEQTLAASYGNEPQTAMIPDTIAVFGSTPN
                     KDGTPSPLLLDRLQKTKEMAQKFPQAKIIVSGGAVKTEFAEADVMAKWLSENGIEKDR
                     LLLDPVARDTPGNAVGIIKLMQTYNGKKVLGIGTLQHIPRATAVLKGYAQHIGYPIEM
                     DSVGGGKPATPGKAKIEALYTYVNVARSMGLFELGDFK"
     gene            complement(3364..4626)
                     /gene="rho"
                     /locus_tag="PXE92_002085"
     CDS             complement(3364..4626)
                     /gene="rho"
                     /locus_tag="PXE92_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDL5761296.1"
                     /translation="MHLTQLKNTPVSKLVEMGENQMGLENLARLRKQDIVFAILKQHA
                     KSGEDIFGQGVLEILPDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKI
                     RPPKEGERYFALLKVDSVNDDKPEASRSKILFENLTPLHANSRLKMERGNGSKEDLTA
                     RILDLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVT
                     EMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYN
                     TVTPVSGKILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFE
                     EFKGTGNMELHLSRRIAERRIFPAIDFNRSGTRKDDLLMAADELQKTWMLRKVLNPMD
                     EVDAIEWLIDKLMMAKTNEEFFEIMKRS"
     gene            complement(4812..5759)
                     /gene="cysK"
                     /locus_tag="PXE92_002086"
     CDS             complement(4812..5759)
                     /gene="cysK"
                     /locus_tag="PXE92_002086"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HDL5761297.1"
                     /translation="MTIYADNSYSIGNTPLVRLKNFGNGNIVVKVEGRNPSFSVKCRI
                     GANMVWQAEKDGILTKDKEIVDATSGNTGIALAYVAAARGYKLTLTMPETMSTERKRL
                     LRGLGVNLVLTEGAKGMKGAIAKAEEIAASDPDRYVTLKQFENPANPAIHQQTTGPEI
                     WDATEGKIDVLVAGVGTGGTITGVSRAIKQDKGKQIISVAVEPSESPVITQTLNGEEV
                     KPGPHKIQGIGAGFIPKNLDLSLLDRVEQVSSEEAITTARRLMAEEGILGGISSGAAV
                     AAADRIAKLPEFADKLIVVILPSASERYLSTLLFEGIEA"
     gene            complement(5933..7429)
                     /gene="pepA"
                     /locus_tag="PXE92_002087"
     CDS             complement(5933..7429)
                     /gene="pepA"
                     /locus_tag="PXE92_002087"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HDL5761298.1"
                     /translation="MEFSVKNGSVEKQRTACLVVGVYEPRRLCSAAEQLDKLSNGYIS
                     TLLRRGDLEGKAGQTLLLHNVPNVLADRVLLVGCGKERELTERQYKQIIQKSVQTINE
                     TGSMEAVSFLTELHVKGRTPYWNVRFAVEAIQEQLYAYNDFKSIKPEVRRELRRVIFN
                     VAHRKDLPDAERALEHGKAVALGISHAKNVANCPPNVCNPHYLAELAKGLAYDYPAIS
                     TTIVDEKQMAELGMNAYLAVSRASENEAFLSVIEYKGNPNADAKPIILVGKGMTFDSG
                     GLSIKPAEAMDEMKYDMCGAATVYGTIKAIAEMKLPLNVIGLLAGCENAVDGKAYRPG
                     DILTTMSGLTVEVLNTDAEGRLVLCDALSYVERFEPELVIDIATLTGACMIALGNHNS
                     GLMSPHNGLANELLAAAEQADDKAWRLPLGEEYQEQLKSNFADLANIGGRLGGACTAG
                     QFLSNFTKKYTWAHLDIAGTAWKSGAAKGATGRPVSLLTQFLINKAQV"
BASE COUNT         2175 a         1515 c         1625 g         2234 t
ORIGIN      
        1 cacccaatat aaggagaaat cataatgaaa cgcttgcgtt attcttatct tgctttgata
       61 ttaggttcag ccttaccttt atcggcttat gctgacggtt atttaagtaa cgataatatt
      121 cggcaatttg atgcccgttt taattttttc ctcgcaaatc cactacctgc gcctattgca
      181 aaagcagatg ggcgtggtga agcgattgag aatttggtgg tgaaatatgc atcagattat
      241 cttaatgata tctatcttaa agaggatgtt attcgttttc gccgttggca gtggcaagat
      301 ctctatacgt cattggattt aaaaacgaaa caaaagcccg attatttaaa tacttaccga
      361 ttacaggcgg aagcgtactt tatcaataag caataccaag aagcattatc tcaactggat
      421 caaattctgc ggcgtaaccc taatgatgtt catgcaatgg caatgagtgt ggttgcaagt
      481 cgggtattgg aaaatcctaa tactgaagcc gagcgtttat tagcgcttta tcaaatctct
      541 ccaagtattg cgcaaaaggt gcagcaatat ctacatttta cagacactat gcttgctgcc
      601 agctatggta gtgagcctca aacaacaatg atccccgaca ccatagcggt atttgggcaa
      661 tcgcctaacc cagacggtac tccaagcaag ggattattgc aacgtcttga gaaaaccaaa
      721 gaaatggcag agaaatttcc gaatgcaaaa attattttaa gtggtggacc tgttcgttat
      781 atctatgcag aagcggatgt aatgaaaaaa tggttgatag agaatggcgt tgatgaaagc
      841 agactgttgc ttgatgatgt ggcacgagat actccgggaa atgctgtcgg tatcattgat
      901 tttatgaagg aatatggagg tagaaaagta ttggggatcg gtacgatctt acatttaccg
      961 agagcaatgt ctgtattgaa aagctatgcg gattccattg gatatgaatt ggaaattgat
     1021 tctgccggag gcggttctcc tcctaatgaa aaaaataaaa aaggtgaagc tctttataca
     1081 tttgttaatg ttgctcgtgc aatggggtta tttaccttgg gcgattttga gaatttgctt
     1141 gccaaagaac aagctgaaaa agaacaaaga gaagcgttgg aaaaagcaca gcagaattat
     1201 ttagaaaaat tggtagctga gcgagatcaa gcagtaaaaa atgcagaaaa ttctgcaaat
     1261 gagctggaag tagccagaca ggcgttagaa acagcaaaac aggctcatca gcaagctgaa
     1321 gaggaattga ataaagaact tagtaaaacg caagagcagt taaaacagag tacggaagcc
     1381 cttagtcgtt taataataaa gcagaacaat cctttttccg agcattatgt tgtacagctt
     1441 aatttgatgg aacaagcaac ttatgatctg taccgtaggt tagcagaaat agaacataca
     1501 caagattgga atttatggct ttcggatagt ctatccaaat atcgtttaaa aaatcgttca
     1561 accgaagact atcacttatt acatatcggg ctagatcatc aggtttccca taattggtct
     1621 attggtggag tatttggtat cagtcagggg caaattgaga ataggacgca taaagtgaaa
     1681 gggacatctg ctggtattta tgctggttat cgtcctacaa gtggtctgtt ttggacaaat
     1741 ttttttaatt acagtcattt tactaatcaa tctggtgtaa caaaacgaga taataatgca
     1801 tacagtctga gtagtgaaat tggaagaaat atcgtgatga gtcatcaatg gcaaattacg
     1861 ccaaagctgc aattaggctg ggcaaaagct ggatcagcac gaatgttttg ggctgggaca
     1921 gggctacgtt taggaaaagt gattgaactc aatgcaatca aacttaaacc ttatgctgat
     1981 attagctatc gttttcgaaa tcgtcatatt gataccttag atagtttatc tgatcgtcat
     2041 cggaatgtaa tcagtattgg gatacaagca gttggaaatc gccattattt tgcaatcgaa
     2101 ggatcaatgt tacacgggga tgcattgaag cgttcatacg gattacacgc aaattatcac
     2161 tatcaatggt aaataggagc ctctatgaaa aaaatcaaaa caaccctttc tgcccttgct
     2221 ttaagccttt ctttgataag tgtaaatagc tgggcgatac cagctgatta tttgagccaa
     2281 gacaatatca gtcaatatga taaggcgttt aactttgtat tagcaaaagt actgcctgca
     2341 ccaaaaggta aagaagatgg tcgaggagcg ccgattgagc atttagttat tcaatatgcg
     2401 ccagactatg ttgatgaccc ttatctaaaa gaggatgtgc tgaatttccg ccgttggtat
     2461 tggcaagcga tgtatgcttc gcttgatcag aaagttaaag agaagccgac ctaccttaac
     2521 acttaccgtt tacaagcaga ggcgtatttc gtcaataaag agtatcggga agcactttct
     2581 cagctcgacc aaattttgcg ccaaaacccc cgtgatattc acgctcttgc gatgacagta
     2641 ttagcttcaa gggtgctaga agatactgaa caagaaacgg ctcgtctttc tgcactgaaa
     2701 cagcttgctc ccgaagtcgc acaacgaatg acagactttt ttgcctttac cgaacaaacg
     2761 ctggcggcaa gctacggtaa tgaaccacag acagcaatga tccctgatac gattgccgtt
     2821 tttggttcta cgccaaacaa agacggcaca ccttcgccgc tgttgttaga tcgattacag
     2881 aaaaccaaag agatggcaca aaaatttccg caagcaaaaa ttatcgtcag tggcggtgct
     2941 gtgaaaacgg aatttgctga ggctgatgtg atggcaaaat ggcttagcga aaatggtatt
     3001 gaaaaagacc gtttgctact tgatcctgtt gccagagata ccccgggaaa tgcggttggg
     3061 attatcaagc tgatgcaaac ttataatggc aagaaagtat taggtatcgg tacgttacaa
     3121 catatccctc gtgcaacagc ggttctcaaa ggttatgcac agcacattgg ttatccgatt
     3181 gagatggatt ccgttggtgg tggcaagccg gcaacaccgg gaaaagccaa aatcgaggca
     3241 ctttatactt atgtaaatgt ggcgagatca atggggttgt ttgagttggg ggattttaag
     3301 tagttacttt attgacagct gctattgata aaaatcccgc gttaagcggg atttttttat
     3361 gttctacgaa cgtttcataa tctcgaaaaa ctcttcgtta gtttttgcca tcattaattt
     3421 gtcgattagc cattcgatag catctacttc gtccattggg ttgaggactt tgcgtaacat
     3481 ccaagttttt tggagttcgt ctgctgccat taagaggtca tctttacgag tacctgagcg
     3541 gttgaagtca atagccggga agatacggcg ttcagcaata cggcgtgaga ggtgtaattc
     3601 catattaccc gtacctttga actcctcgaa aatcacttcg tccatttttg atccggtatc
     3661 cacaagtgcg gttgcgataa tggttaagct gccaccttct tccacattac gggctgcacc
     3721 gaagaaacgt tttggacgat gtaaggcgtt agcgtccaca ccaccggaaa ggattttgcc
     3781 ggaaaccggg gtaacggtgt tgtaggcacg ggctaaacga gtgatggagt ctaataaaat
     3841 caccacatct tttttatgct ctaccgagcg ttttgctttc tcgattacca tctccgcaac
     3901 ttgaacgtgg cgggttgccg gttcatcaaa ggttgaggca attacttcac cacgtacggt
     3961 gcgttgcatc tctgttactt cttccggacg ctcatcaatt aataatacga taagctcaca
     4021 ttcaggatga ttatgggtga tgctttgtgc aatattttgc agtaacacgg ttttaccagc
     4081 ttttggcggg gcaacaatta acgctcgctg acctttaccg attggggcgg ctaaatctaa
     4141 aatacgagcg gttaaatctt cttttgatcc attgccacgc tccattttta agcgagaatt
     4201 ggcgtgcaga ggggttaagt tttcaaagag aattttactg cgagaggctt ccggtttgtc
     4261 atcattaact gaatcaactt tcagtagggc aaaatagcgt tctccctctt ttggtgggcg
     4321 aattttacct tctattttat cgccagtttg taagttaaaa cggcggattt ggcttggaga
     4381 aacataaata tcatcagggc cggctaaata tgagctatct gatgagcgga ggaaaccgaa
     4441 gccgtccggt agaatttcaa gcacgccttg cccgaaaatg tcttcaccgc tttttgcgtg
     4501 ttgtttaaga atagcaaata cgatgtcttg tttacgtaaa cgagccagat tttctaagcc
     4561 catttgattt tcacccattt ccacaagctt tgaaacaggg gtgtttttaa gttgagtaag
     4621 atgcataatt tgaatgtaaa attgtgatta attaagattg gatttgttga tattgattag
     4681 atacggccaa ccgtaaagat gtggcgaaga ataacgcaat aggagacaaa ttgcaaattt
     4741 tttataaaaa ataaccgctt gtttgcaata aaaatgccga catcagccgg catttttata
     4801 ttaatttaat attacgcttc aatcccttca aacagtagcg tacttaaata acgctctgag
     4861 gctgaaggca gaatcactac aattaattta tcggcaaatt caggtagttt agcgatgcga
     4921 tctgcggcag caacggcagc acctgatgaa ataccgccta aaatgccttc ttctgccatt
     4981 aaacggcgtg cggttgtaat cgcttcttcg cttgaaactt gttcaacacg gtcaagcagt
     5041 gataaatcta agtttttcgg aataaagcct gcaccaatgc cttgaatttt gtgcgggccc
     5101 ggtttgactt cttcaccgtt taaagtttgc gtaatgaccg gcgattcact cggttctacc
     5161 gccactgaaa taatttgctt gcctttatct tgcttaatag cacgggaaac accggtaata
     5221 gtgccacctg ttcctacgcc tgccactaat acatcaattt taccttcagt tgcatcccaa
     5281 atttcaggac cggtagtttg ttggtgaatt gccgggtttg ccgggttttc aaactgtttt
     5341 aaggtaacat agcgatctgg gtcggaagcc gcgatttctt cagctttcgc aatcgctcct
     5401 ttcattcctt ttgccccttc ggttaagact aaatttactc ctaagccacg caataagcgt
     5461 ttacgctcgg tactcattgt ttccggcatt gtgagcgtta atttataacc acgagcggct
     5521 gctacataag ccaaggcaat tccagtgtta ccgctggttg catctacaat ttctttgtct
     5581 ttggttagaa taccgtcttt ctctgcttgc cacaccatat tcgcaccaat acggcatttc
     5641 acgctaaaac ttgggttacg cccttccact tttaccacaa tattgccgtt gccaaaattc
     5701 tttaaacgca ccagcggggt attgccgatt gagtatgagt tgtctgcata gatagtcata
     5761 gtgatattcc ttaataagta ttgagattgg gatttatcat acttattttt aatcgctttt
     5821 ctagtagctg gaatttattt gatataacta aaaagaatat aggggcgtat gaagaggatc
     5881 ggtctgattt tctttttgca aaaactcgat aaaatcagac cgcttgtgag agttagacct
     5941 gggctttatt gatcaaaaat tgtgttagta aggataccgg tctgccggtc gcccctttgg
     6001 ctgccccaga tttccaagcc gtgccggcaa tatctagatg cgcccaagta tatttctttg
     6061 taaagttaga gaggaattga ccggcagtac aggctccgcc taaacgtccg ccgatattag
     6121 caagatcagc aaagttagat tttaactgtt cttgatattc ttcccctaaa ggtaaacgcc
     6181 acgctttgtc atcggcttgc tctgcggcag ctaagagttc gtttgctaaa ccgttatgag
     6241 gtgacatcag cccgctgtta tgattaccta aggcaatcat gcaagcacca gttagggtag
     6301 caatatcaat cactaattcc ggttcaaaac gttctacata gctgagagca tcacatagca
     6361 ctaaacgtcc ttctgcatcg gtgttgagta cctcaacggt taaaccagac attgtagtga
     6421 gaatatcccc cggtcgatag gctttgccat caaccgcatt ttcacagccg gcgagtaagc
     6481 cgataacatt gagtggtaat ttcatctcgg caattgcttt gattgtaccg taaacagtag
     6541 cagctccgca catatcgtat ttcatttcgt ccatcgcctc cgcaggttta atggataaac
     6601 cgccagagtc aaaggtcatt cctttgccga ctaagataat cggcttcgca tcagcattcg
     6661 ggttgccttt atattcaatc actgaaagaa aggcctcatt ttcagaggct ctggaaaccg
     6721 ctaagtaagc attcattccc aattctgcca tctgtttttc atcaacaatg gtagttgaaa
     6781 tggcaggata gtcgtaggct aaacccttag ccaattcggc taaatagtga ggattacaca
     6841 cattaggcgg acaatttgct acatttttag cgtggctgat tccaagtgct acggcttttc
     6901 cgtgttctaa agctcgttcg gcatcaggaa gatctttacg gtgtgcgaca ttaaaaatca
     6961 cacggcgtaa ttcacggcga acttcaggtt tgatgctttt gaaatcgtta taggcatata
     7021 gttgttcttg gattgcctct accgcaaatc gcacattcca ataaggtgtt ctacctttaa
     7081 cgtgcagttc ggttaaaaag ctgacagctt ccattgaacc ggtttcatta atagtttgta
     7141 cacttttttg aataatttgt ttgtattggc gttcagttaa ttcacgctct tttccacagc
     7201 cgactaataa tactcgatca gcgagtacat tcggcacatt atgcaagagt aaggtttgcc
     7261 ctgctttgcc ttctaaatct cctcttctca gtaatgtgct gatatagccg ttacttaatt
     7321 tatcaagctg ttctgcggca gaacataatc ggcggggttc atagacacca acaaccaaac
     7381 aggcggttct ttgtttctca acactgccat ttttgacact aaattccatt tttcctcctt
     7441 aatttttatt gctacagatt ttataatgcc aacataatca tcaatgataa gtaaaatata
     7501 gatataccct gatgtaaatc attatttaaa ataatttact ttttatttg
//
LOCUS       DANMBQ010000117         7459 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.118, whole genome shotgun sequence.
ACCESSION   DANMBQ010000117 DANMBQ010000000
VERSION     DANMBQ010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7459
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.118"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            1..501
                     /locus_tag="PXE92_002088"
     CDS             1..501
                     /locus_tag="PXE92_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL5761299.1"
                     /translation="MQTINEIKEEIYPIFEPIIGTIRLKTYFSYYAVFKDGLMIALYQ
                     NGATYLRIAKKDIEYIRQYPKTCILCDEKIGIQSRKFHYIPQVLIDDTPKFSSLLFGI
                     IEELRTEKYKISQKRATQIRNLPNMNLKLERMLKKIGIHSIHDFTQEGYMSTFIKLIL
                     HRRLTV"
     gene            789..2183
                     /gene="fumC"
                     /locus_tag="PXE92_002089"
     CDS             789..2183
                     /gene="fumC"
                     /locus_tag="PXE92_002089"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDL5761300.1"
                     /translation="MEFRIEKDTMGEVQVPADKYWAAQTERSRNNFKIGPEASMPAEI
                     IEAFGYLKKAAAYANHDLGVLAVEKRDLIAKACDEILANKLDDQFPLVIWQTGSGTQS
                     NMNVNEVVANRAHVLNGGKLGEKSIIHPNDDVNKSQSSNDTYPTAMHIAAYKKVVEHT
                     LPCVKRLQKTLAEKAEAFKDVVKIGRTHLMDATPLTLGQEFSAYAAQLAFGIKALENT
                     LPHLRELALGGTAVGTGLNTPQGYDVKVAEYIAKFTGLPFVTAQNKFEALATHDAIVE
                     THGALKQLAVSLYKIANDVRLLASGPRSGIGEILIPENEPGSSIMPGKVNPTQCEAMT
                     MVCAQVLGNDVTISFAGTQGHFQLNVYKPVMAYNFLQSAQLLGDACVSFDEHCAVGIE
                     PNYPRIKQQLDQSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQF
                     DEWVRPEDMVGSLK"
     gene            2310..2420
                     /locus_tag="PXE92_002090"
     CDS             2310..2420
                     /locus_tag="PXE92_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDL5761301.1"
                     /translation="MKKLILIALVTTLGLSACGVKGPLYFPEQAPKHEQK"
     gene            2525..3775
                     /gene="lysA"
                     /locus_tag="PXE92_002091"
     CDS             2525..3775
                     /gene="lysA"
                     /locus_tag="PXE92_002091"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDL5761302.1"
                     /translation="MNHFEYKNNQLFAEEVAIADIIEQYGTPAYVYSRSTLERHWHAF
                     NNAFGSHPHLVCFAVKSNSNIALLNVMARLGSGFDIVSQGELERVLAAGGEASKVVFS
                     GVAKSHSEIKRALEVGIRCFNIESVSELHRINQVAGELGKIAPISLRVNPDVDAHTHP
                     YISTGLKENKFGVSVTQAREVYRLAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLI
                     ILMEQLREDGIELHHLDLGGGLGVPYNGEEPPHPTEYAKALLEKLKGYENLEIIIEPG
                     RAITANAGILVTKVEYLKQNEDRNFAIVDTGMNDMIRPALYEAYMQITEVDKTLNRDK
                     AVYDVVGPICETSDFLGKQRELAISEGDLIAIRSAGAYGAAMSSTYNSRPQAAEIMVD
                     GNQAHLIKARATFADLWRLEKLLP"
     gene            3789..4418
                     /locus_tag="PXE92_002092"
     CDS             3789..4418
                     /locus_tag="PXE92_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HDL5761303.1"
                     /translation="MKLYGLTGACSFVPHVALEWVKLRANQDYAFQAVSREFIKSAEY
                     LALNPRGNVPLLVDGDLALTQNQAIVHYLDELYPEAKLFGSKTARDKAKAARWLAFFN
                     SDVHKSFVPLFRLPSYAEGNETLTKTIRQQSAEQILEQLAFANAHLENHIFFGEEISV
                     ADAYLYIMLNWCRLLGLDFSHLSQLSAFMQRVEADQGVDNVREQEGLKG"
     gene            4489..5934
                     /gene="tldD"
                     /locus_tag="PXE92_002093"
     CDS             4489..5934
                     /gene="tldD"
                     /locus_tag="PXE92_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HDL5761304.1"
                     /translation="MLNQVSNSLLAPSGLELSHLTQVLDHFSGRHIDYADLYFQLSQD
                     ESWSLEDSIIKEGGFYIDRGFGVRAISGEKTGFAYADQITLKQLEQCAAAARSISPTS
                     GQLSVKNFKKTTACSRYPAINPLETISREQKVELLHLVDKTARMADPRVIQVNANLSA
                     VYEEMLVAATDGTLAADIRPLVRLSVSVLVEQNGKRERGSAGAGGRFGLDWFLAPSET
                     GFSRAESLTKEAVRQALVNLTAIPAPAGTMPIVLGAGWPGILLHEAVGHGLEGDFNRK
                     ESSLFSGKIGQMVTSELCTIVDDGTVPNMRGSITVDDEGVPSQRNVLIENGILKGYMQ
                     DKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYLTEGNHEFEEMIESVEYGLYAPHFS
                     GGQVDITSGKFVFSTAEAYLIEKGKITKPVTGATLIGSGIEAMQQVSMVGKKMELDPG
                     IGTCGKEGQSVPVGVGQPTVKLDKITVGGRG"
     gene            5998..6879
                     /gene="prmA"
                     /locus_tag="PXE92_002094"
     CDS             5998..6879
                     /gene="prmA"
                     /locus_tag="PXE92_002094"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDL5761305.1"
                     /translation="MAWVQIRLNSTDKQAEEISDFLTEIGAVSVTFMDSQDTPIFEPL
                     PGETRLWGNTDVVGLFDAETDMNLIVEALKTSKLVDENFAHKIEQIEDKDWEREWMDN
                     FHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLEGK
                     TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASQNNAEANGVAEKLQLFLAKDQ
                     PRELQADVVVANILAGPLKELAPNIITLVKPNGNLGLSGILATQAESVCEAYSEAFTL
                     DPVVEKEEWCRITGRKI"
     gene            complement(7054..7129)
                     /locus_tag="PXE92_002095"
     tRNA            complement(7054..7129)
                     /locus_tag="PXE92_002095"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7094..7096),aa:Trp,seq:cca)
     gene            complement(7195..7271)
                     /locus_tag="PXE92_002096"
     tRNA            complement(7195..7271)
                     /locus_tag="PXE92_002096"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7235..7237),aa:Asp,seq:gtc)
     gene            complement(7282..7397)
                     /gene="rrf"
                     /locus_tag="PXE92_002097"
     rRNA            complement(7282..7397)
                     /gene="rrf"
                     /locus_tag="PXE92_002097"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         2224 a         1663 c         1646 g         1926 t
ORIGIN      
        1 atgcaaacaa tcaatgaaat taaagaagaa atctacccta tatttgagcc tatcattgga
       61 acaattcggc taaaaaccta cttttcctac tacgcagttt ttaaggatgg attgatgatt
      121 gcattgtatc aaaatggagc aacttattta cgtattgcga aaaaagatat tgaatacatt
      181 cgtcagtatc ctaaaacctg tatcttatgc gatgaaaaaa ttggtataca aagtagaaaa
      241 tttcattata ttccgcaagt tctcatagat gatacaccaa aatttagctc gctactcttt
      301 ggaattatag aggaactccg aacggagaag tacaaaataa gccaaaagcg agctacacaa
      361 atccgaaacc taccaaatat gaatttaaag ttagaaagaa tgttgaaaaa aatagggatt
      421 cattccattc atgattttac tcaagaaggg tatatgtcaa cttttatcaa actgattctc
      481 caccgaagac ttactgttta agctaaacgg agctttaaat caccaatata tttacacctt
      541 cacagatcaa caaaaaaggg aactaatgca agaagcaaat caagcgctat ataattcagg
      601 cctaagaaaa agatttaacg ccctgtagtt aaataatgtg atccaaatca taaaatataa
      661 aaaaaccaat aaggaattgc aattcgcagt tcctttcttt ttcttttata tgctagtatc
      721 accttatacc tctaaattat tagtgcctac tgattttcaa ttaatccaac aatttaggag
      781 agcgcatcat ggaattccgt atcgaaaaag acacaatggg cgaagtgcaa gttcctgccg
      841 ataaatactg ggcggcgcaa accgagcgtt cacgcaataa cttcaaaatc gggccggagg
      901 catcaatgcc ggcggaaatt atcgaggcgt ttggctatct gaaaaaagcg gctgcctatg
      961 ctaatcacga tttaggcgta ctagcggtcg aaaaacggga tttaattgca aaagcctgtg
     1021 atgaaatttt ggcgaacaaa ctcgatgatc aattcccgct ggtgatttgg caaaccggct
     1081 cgggtacgca gtcaaatatg aacgtgaatg aagtcgtggc aaaccgtgca cacgtgttaa
     1141 acggcggcaa gctgggtgaa aaatcgatta ttcacccgaa tgatgatgtg aataaatccc
     1201 aatcttctaa cgacacctac ccaactgcaa tgcacatcgc tgcttacaaa aaagtggtgg
     1261 aacacaccct accttgtgtg aaacgtctgc aaaaaacctt agcggaaaaa gccgaagcct
     1321 ttaaagatgt ggtcaaaata gggcgtactc acttaatgga tgctaccccg ctcacgctcg
     1381 gtcaagagtt ctctgcctat gcagcacagt tagcattcgg catcaaagca ttggaaaaca
     1441 ccctgccaca cctgcgtgag ctggcactcg gcggcacagc agtcggcacc ggcttgaata
     1501 ccccgcaagg ttacgatgtg aaagtggcgg aatacattgc gaaattcacc ggtttaccgt
     1561 tcgttaccgc ccaaaacaaa tttgaggcat tagcgactca cgatgcgatt gtcgaaaccc
     1621 acggtgcatt aaaacagctt gcggtgtcgc tctacaaaat tgccaacgat gtccgtttat
     1681 tagcctccgg tcctcgttca ggcattggcg aaattctgat tccggaaaac gagccgggtt
     1741 catcaattat gccgggtaaa gtaaacccaa cccaatgcga agcaatgaca atggtatgtg
     1801 cccaagtatt aggcaacgat gtaaccatct cttttgccgg cacgcaaggg catttccaac
     1861 tgaatgtcta taaaccggtg atggcgtaca acttcctgca atcggctcaa ctgctaggcg
     1921 atgcgtgcgt gtcgtttgac gaacactgtg cagtcggcat tgaaccgaac taccctcgca
     1981 ttaaacaaca gctcgaccaa tcgctgatgt tagtgaccgc attaaatact cacattggtt
     2041 atgaaaatgc agcgaaaatc gccaaaactg cccacaaaaa cggcacaaca ctgaaagaag
     2101 aggcgattaa cttaggctta gtcacggcag aacagttcga tgaatgggtt cgtccggaag
     2161 atatggttgg cagcttgaaa taagcccaac ccttctcttg taatctgatt tacacctcaa
     2221 tctaccggta agattgaggt gtaatttttt atagcgaggg tactgatttt gttttagaat
     2281 gaagcatcat tttttaagcg gaaaaaccta tgaaaaaact cattttaatc gcattagtta
     2341 ctactttagg cttaagtgct tgtggggtca aaggcccact ctacttccct gagcaagccc
     2401 ctaaacatga acaaaaataa gcattgcaag cggtctgttt tggctaaaat tttgcaaatt
     2461 tttgtgaaaa aatgaccgct tgttgcctct tttctttcaa aatcccaaac acaacggact
     2521 ttcaatgaac cattttgaat ataaaaacaa ccaacttttt gctgaagaag tcgctattgc
     2581 cgatattatc gagcaatacg gcacgccagc ttatgtttac tccagatcta cccttgaacg
     2641 ccactggcac gcattcaata atgcgtttgg ctcgcaccca catttagttt gctttgcagt
     2701 caaatccaac tctaacattg ccttgttaaa tgtaatggct cgtctcggtt caggctttga
     2761 tattgtctct caaggcgagt tggagcgtgt cttagctgcc ggcggcgaag cctctaaagt
     2821 tgtcttttcc ggtgtggcaa aatcgcacag cgaaatcaaa cgagcattgg aagtcgggat
     2881 tcgttgcttt aacattgaat cggtttccga acttcaccgc attaaccaag ttgccggtga
     2941 actaggcaaa atcgcaccga tttcactgcg ggtaaacccg gatgtggacg cccacactca
     3001 cccatacatt tccaccggtt taaaagaaaa caaattcggc gtgagcgtta ctcaagcccg
     3061 tgaagtgtat cgcttagcca aaaccttacc gaatgtgaaa attaccggta tggattgtca
     3121 catcggttcg caattaaccg aattgcaacc ttttttagat gcaacggatc gcttaatcat
     3181 cttaatggag caactgcgtg aagacggcat tgagctacac cacttagact taggtggcgg
     3241 tttaggcgtg ccttacaacg gcgaagagcc tccgcatccg accgaatatg ccaaagcctt
     3301 gctggaaaag ctcaaaggct atgaaaactt agaaatcatt attgaaccgg ggcgtgccat
     3361 taccgcaaat gccggtattt tagtgacgaa ggtggaatac ttgaaacaaa atgaagatcg
     3421 taattttgcg attgtcgata ccggtatgaa cgatatgatt cgcccggctc tgtatgaagc
     3481 ctatatgcaa attacggaag tggataaaac cttaaaccgt gacaaagctg tttacgatgt
     3541 ggtcggtccg atttgcgaaa cctcggattt cttaggcaaa caaagagaat tggcaatttc
     3601 tgaaggggat ttaatcgcta ttcgttctgc cggtgcttat ggggcggcga tgtcttcaac
     3661 ctacaactct cgcccacaag cggcagaaat tatggttgat ggcaaccaag cccatttaat
     3721 taaagcccga gccacttttg ctgatttatg gcgtttagaa aaattattac cttaatgagg
     3781 aagaaaagat gaaattatat ggattaaccg gtgcttgttc atttgtacca cacgttgccc
     3841 tagagtgggt gaaattgcgt gccaatcaag attatgcgtt tcaagctgtt agccgtgaat
     3901 ttattaaatc ggcggaatat ctggctttaa accctcgtgg taacgtacca ttgttggttg
     3961 atggcgactt ggccctcacg caaaaccaag ctatcgtcca ctatttagac gagctttatc
     4021 cggaagctaa attattcggc agcaaaaccg ctcgtgataa agccaaagcg gctcgttggt
     4081 tagctttttt caattcagat gtgcataaat cattcgtgcc actgttccgc ttgccaagtt
     4141 atgcggaagg caatgaaacg ctcaccaaaa ctattcgcca acaatcggct gagcaaattt
     4201 tagaacaact ggcttttgcg aatgctcatt tagaaaatca tattttcttt ggcgaagaaa
     4261 tttcggttgc cgatgcgtat ctctacatta tgctcaactg gtgtcgccta ctagggttgg
     4321 atttctctca tctttcccaa ctttctgcct ttatgcaacg agtggaggca gaccaaggcg
     4381 tagataatgt gcgtgagcaa gaaggcttaa aaggttaatt caccattgtt catttaagac
     4441 ggtagatttt atgttaaaat ctaccgtctt ttatttttag gaatcaccat gctaaatcag
     4501 gtttcaaaca gcttgcttgc tccaagtggg cttgaattat cgcacttaac tcaagtgtta
     4561 gatcacttct ccggccgtca tattgattat gccgatctct acttccaact cagccaagac
     4621 gaaagctgga gcttggaaga cagcatcatc aaagaaggcg gtttttatat cgaccgaggg
     4681 ttcggtgtgc gagccatatc aggcgaaaaa accggctttg cctacgccga tcaaatcacg
     4741 ttaaaacagc ttgagcaatg tgccgctgcc gcacgttcaa tcagcccaac aagcggtcaa
     4801 ttatcggtaa aaaatttcaa aaaaacgacc gcttgttctc gctacccggc aatcaacccg
     4861 ctagagacca tcagccgtga acaaaaggtc gaattgctcc atttggtgga taaaaccgct
     4921 cgaatggcag atccgagagt gattcaagtg aatgcgaatc tctcagcggt atatgaagaa
     4981 atgttagtgg cagcgactga cggcacactg gctgcggata ttcgcccgtt agtgcgttta
     5041 tctgtgtcgg tactggtgga acaaaatggc aagcgtgaac gaggttcagc aggtgccggt
     5101 ggtcgctttg gtttagattg gttcttagca ccaagcgaaa ccggctttag ccgtgcggaa
     5161 tcgcttacca aagaagccgt tcgccaagcc ctcgttaatc tcacagccat tcctgcaccg
     5221 gcaggcacga tgccgattgt tctcggtgct ggctggccgg gcattttgct ccacgaagca
     5281 gtcggacacg gcttggaggg tgattttaac cgtaaggaat cttcgctctt cagtggtaaa
     5341 atcgggcaaa tggtcacctc tgagctttgc accattgttg atgacggtac ggtgccgaat
     5401 atgcgaggct caatcacggt agatgacgaa ggcgtgcctt cgcaacgtaa tgtgttaatt
     5461 gaaaacggca ttctaaaagg ctatatgcaa gacaaactca atgcccgcct gatgggagtt
     5521 gccccaaccg gcaacggcag acgggaatct tacgctcatt tgccgatgcc acgaatgacc
     5581 aacacctacc tcaccgaagg caatcacgaa tttgaagaga tgattgaatc ggtcgaatac
     5641 ggtttatatg ctcctcactt cagtggtgga caagtggata ttacctccgg caaatttgtg
     5701 ttctccaccg ccgaagccta cttaatcgaa aaaggcaaaa tcaccaaacc tgttaccggt
     5761 gcaaccctga tcggcagcgg catagaagca atgcaacaag tttcaatggt cggcaaaaaa
     5821 atggaactcg accccggcat cggcacttgt ggcaaagaag ggcaatccgt accagtcggc
     5881 gtagggcagc ctacagtgaa gttggataaa attacggtgg ggggaagagg gtaatctctc
     5941 cccgtttgca aaatataaag aaaatatcac cgcttgtagc gataaaagga aaacaaaatg
     6001 gcttgggtac aaattcgttt aaacagtaca gataaacagg ctgaggaaat cagcgatttt
     6061 ttaaccgaga ttggagcggt gtcagtgact tttatggata gtcaagatac cccaattttt
     6121 gaacctcttc cgggggaaac ccgtctttgg ggaaataccg atgtggttgg gcttttcgat
     6181 gcggaaactg atatgaatct tatcgtagaa gcactaaaaa ccagcaaatt ggtggacgaa
     6241 aactttgctc acaaaatcga gcaaatcgaa gacaaagact gggaacggga gtggatggat
     6301 aatttccacc caatgcagtt tggcaaacgg ttatggatct gcccaagctg gcgtgaagta
     6361 ccagacccga atgcagtgaa tgttatgtta gaccctggtt tagcatttgg caccggcaca
     6421 cacccaacga cctcgctttg cttacaatgg ttagatagct tagatttaga aggcaaaacg
     6481 gttatcgact tcggctgtgg ctccggtatt ttagctatcg ctgcacttaa actcggtgca
     6541 aaacaagcca tcgggattga tatcgaccca caggcgattt tagctagtca aaacaatgct
     6601 gaggcgaacg gcgtagcaga aaaactacaa ctattcttag ccaaagatca gccaagagag
     6661 ttacaagccg atgtcgttgt tgcgaatatt ctagccggcc cactcaaaga gttagcaccg
     6721 aatatcatca cgctggttaa accaaacggc aatttaggct tatccggcat tcttgctact
     6781 caggctgaaa gtgtgtgtga ggcttatagc gaagccttta cgctagaccc tgttgtagaa
     6841 aaagaagaat ggtgtcgtat tacaggccgc aaaatctaat ataagaagcc ctgttttaaa
     6901 cagggcttac tttttgataa attctactac tctttacctg tcttgggaat cgttctccct
     6961 aaattaatta acacaagcgg tagaaataac aggaaaattt acaaattaca taaatgaaaa
     7021 aagccgactg aaatcagtcg gctttctaaa taatggcagg ggcggagagg ctcgaactcc
     7081 caacacccgg ttttggagac cggtgctcta ccaattgaac tacgccccta ttgataggta
     7141 ttcattttgc acttataggg gcgaattact attcgcccct gcattaaaga ttattggcgg
     7201 aacggacggg actcgaaccc gcgaccccct gcgtgacagg caggtattct aaccagctga
     7261 actaccgctc ctaaattaat agattgataa tgccctactc tcacatggcg aatcaccaca
     7321 ctaccatcgg cgttactgcg ttttacttct gagttcggta tggagtcagg tagagccaca
     7381 gcactctggt tatcaatcaa attctttcat ttagtcagtt tactaaaata tagtttatac
     7441 tttctaataa actcactaa
//
LOCUS       DANMBQ010000118         7387 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.119, whole genome shotgun sequence.
ACCESSION   DANMBQ010000118 DANMBQ010000000
VERSION     DANMBQ010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7387
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.119"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            53..472
                     /locus_tag="PXE92_002098"
     CDS             53..472
                     /locus_tag="PXE92_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS sensor domain-containing protein"
                     /protein_id="HDL5761306.1"
                     /translation="MVPSNEAVLKAVHDTLVISTTDLQGVITYANDLFCKLTGFTREE
                     LIGQPHNIVRHPAVPKEVYKDMWDTIQAGKIWTGIVPNCGKGGVVYVVDTTVQPMFDE
                     TGKITGYISVRRVINDLMTNFEAVESAKEIFDDFYGE"
     gene            543..2099
                     /locus_tag="PXE92_002099"
     CDS             543..2099
                     /locus_tag="PXE92_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase flavoprotein subunit alpha"
                     /protein_id="HDL5761307.1"
                     /translation="MSLIPHIHIAYGSESGNAEKLAQQLAIQPFLLPYSPTLSTLNET
                     DLSQLSAESLLLIVTSSFGDGEPPENADEFAEKLENLTACNLQYAIFGLGDITYDKFC
                     GYSKQLDSLLQQKQAKAVIARVDADLNYQEIFKQWLPLVEQALHSTNKETIQHSLSVQ
                     AYGEEMAYQAEVLEIKHLANSSPAVYHIRLSLKESGIFYQAGDLIYVKVQQPDRLLNE
                     YAEWFNDQNAVALLRHKELRLLSKNVLRDIQKICGSNELKDLTKISNKKALEQYVYGR
                     DLLDVLRDFDPNKSVTLADLEPILSNLAARAYSISSCGKTHPDYVDLCIRHVSYHLNG
                     RDYQGTASGYLSELQAGDFVSIFANANPNFRLPETLTAPVVMIGSGTGIAPHIAFLQA
                     LEQQYQGVESYLFFGERYRDKDFLYQTELENYLAKGTLTQLFTAFSRDQAEKFYVQDA
                     LSQQAELVWHLIQQGAYFYICGSKAMSKAIDAELIKIADQIGGDPYIDDFNNIIAKLV
                     AEGRLMRDVY"
     gene            complement(2157..2414)
                     /gene="rpsQ"
                     /locus_tag="PXE92_002100"
     CDS             complement(2157..2414)
                     /gene="rpsQ"
                     /locus_tag="PXE92_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDL5761308.1"
                     /translation="MTDKIRTVQGKVVSDKMDKSFVVAIERTVKHPLYGKFIRRTTKL
                     HVHDENNEAKLGDVVEIKECRPISKTKSWTLVRVVEKAVVA"
     gene            complement(2414..2605)
                     /gene="rpmC"
                     /locus_tag="PXE92_002101"
     CDS             complement(2414..2605)
                     /gene="rpmC"
                     /locus_tag="PXE92_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDL5761309.1"
                     /translation="MKAQELRNKSVEELNGELVNLLGEQFKLRMQAATGQLQQTHQLK
                     QVRRSIAQVKTVLTEKAGE"
     gene            complement(2605..3015)
                     /gene="rplP"
                     /locus_tag="PXE92_002102"
     CDS             complement(2605..3015)
                     /gene="rplP"
                     /locus_tag="PXE92_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDL5761310.1"
                     /translation="MLQPKRTKFRKVHKGRNRGIAGGTEVSFGSFGLKAIGRGRLTAR
                     QIEAARRAMSRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVSEEVARNAFALAAAKLPFKTTFVTKTVM"
     gene            complement(3029..3736)
                     /gene="rpsC"
                     /locus_tag="PXE92_002103"
     CDS             complement(3029..3736)
                     /gene="rpsC"
                     /locus_tag="PXE92_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDL5761311.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLN
                     KELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQIN
                     IAEVKKPELDAKLVADSIASQLERRVMFRRAMKKAVQNAMKLGAKGIKVEVSGRLGGA
                     EIARSEWYREGRVPLHTLRADIDYSTAEAHTTYGVIGVKVWIFKGEILGGMAAVIESE
                     KEPAAQPKKAPRGKGRK"
     gene            complement(3756..4088)
                     /gene="rplV"
                     /locus_tag="PXE92_002104"
     CDS             complement(3756..4088)
                     /gene="rplV"
                     /locus_tag="PXE92_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDL5761312.1"
                     /translation="METIAKHRYARTSAQKARLVADLIRGKKVSVALEILTFTNKKAA
                     TLVKKVLESAIANAEHNDGADVDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            complement(4099..4374)
                     /gene="rpsS"
                     /locus_tag="PXE92_002105"
     CDS             complement(4099..4374)
                     /gene="rpsS"
                     /locus_tag="PXE92_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDL5761313.1"
                     /translation="MPRSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSM
                     IGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHAADKKAKK"
     gene            complement(4405..5226)
                     /gene="rplB"
                     /locus_tag="PXE92_002106"
     CDS             complement(4405..5226)
                     /gene="rplB"
                     /locus_tag="PXE92_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDL5761314.1"
                     /translation="MAIVKCKPTSAGRRHVVKVVNAELHKGKPFAALLDTKSKTGGRN
                     NLGRITTRHIGGGHKQHYRLIDFKRNKLDIPGVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLTAGDQIQAGASAPIKVGNALPMRNIPVGTTVHNVELKPGKGGQIARSAGA
                     YVQIIAREGNYVTLRLRSGEMRKVLAECTATIGEVGNSEHMLRVLGKAGANRWRGIRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRHNKRTDKFIVRRRGK"
     gene            complement(5245..5550)
                     /gene="rplW"
                     /locus_tag="PXE92_002107"
     CDS             complement(5245..5550)
                     /gene="rplW"
                     /locus_tag="PXE92_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDL5761315.1"
                     /translation="MIQQERLLNVLKAPHISEKATNNAEKGNTIVFKVALDANKVEIA
                     NAVEELFEVKVDSVRTVVVKGKTKRRGAKVGRRSDWKKAYVTLQEGQSLDFVEGAAE"
     gene            complement(5547..6149)
                     /gene="rplD"
                     /locus_tag="PXE92_002108"
     CDS             complement(5547..6149)
                     /gene="rplD"
                     /locus_tag="PXE92_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDL5761316.1"
                     /translation="MELQVVGANALTVSETTFGREFNEALIHQVVVAYAAGARQGSRA
                     QKTRAEVSGSGKKPWRQKGTGRARSGDIKSPIWRSGSVTFAAKPQDHSQKVNKRMYRG
                     AIKSILSELVRQDRLVVVEKFEIDAPKTKVLAQKLKDMALNDALIITANVDENLFLAA
                     RNLYKVDVRDVQGIDPVSLIAFDKVVVTVDAVKQIEEMLA"
     gene            complement(6165..6794)
                     /gene="rplC"
                     /locus_tag="PXE92_002109"
     CDS             complement(6165..6794)
                     /gene="rplC"
                     /locus_tag="PXE92_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDL5761317.1"
                     /translation="MIGLIGRKVGMTRVFTEDGVSIPVTVIEIEANRVTQVKTLENDG
                     YSAIQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFRTTEGEEFTLGQEINVDIFT
                     DVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKK
                     MAGHLGAERVTVQSLEVVRVDVERKLLLVKGAVPGATNGDVIVKPAVKA"
     gene            complement(6820..7131)
                     /gene="rpsJ"
                     /locus_tag="PXE92_002110"
     CDS             complement(6820..7131)
                     /gene="rpsJ"
                     /locus_tag="PXE92_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDL5761318.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
BASE COUNT         2151 a         1568 c         1366 g         2302 t
ORIGIN      
        1 aacacataac aaaattcatt tatattaatg gagattcaac acggctgaac aaattgttcc
       61 ttcaaatgaa gctgttttaa aagcagtcca cgatacttta gttatttcaa caactgattt
      121 acaaggtgtt attacttacg ctaacgacct tttctgcaaa ttaaccggtt ttacccgtga
      181 agaattaatt ggacaaccgc ataatatcgt acgccaccca gctgtaccaa aagaagttta
      241 taaagatatg tgggatacaa tccaagccgg taaaatctgg acaggtatcg taccaaactg
      301 cggtaaaggc ggtgtagttt atgtggttga taccaccgtt caaccaatgt ttgatgaaac
      361 aggcaaaatt acaggctata tcagcgttcg ccgtgtaatt aatgatttaa tgaccaactt
      421 tgaagcagta gaatcagcaa aagaaatctt tgatgacttc tacggtgaat aattaaaaaa
      481 caatgattgc gtgtaaaaga tgatctcttt tacacgcaat tttttatttt cgaggagttt
      541 gtatgtctct cattccccat atccacattg cttatggttc ggagtctggt aacgcagaaa
      601 agcttgccca acaattagct atccaaccct ttttacttcc ctactcaccc acactttcta
      661 cattaaacga aaccgattta agccaattat ctgccgagag tttattgctt attgtaacca
      721 gctcctttgg tgatggcgaa ccacctgaaa acgccgatga atttgcagaa aaattggaaa
      781 atttgaccgc ttgtaatctg caatatgcga tattcgggct aggtgatatt acttatgata
      841 aattctgtgg ctatagcaaa caactagatt cattattaca acaaaaacaa gctaaagctg
      901 tgattgcaag ggttgatgcc gatttaaact atcaagaaat ttttaaacaa tggctacccc
      961 tagtggagca ggcattacat tcaacaaaca aagaaacgat ccaacattcc ctttctgttc
     1021 aagcttacgg cgaggaaatg gcataccaag cagaagtgtt ggaaattaag catttggcaa
     1081 actcaagccc tgcggtgtat cacattcgtt tatcattaaa agagagcggt attttctatc
     1141 aagcagggga tttaatttat gtcaaagtgc agcaaccaga cagactatta aatgaatatg
     1201 cagaatggtt taacgatcaa aatgcagttg cattactacg ccataaagaa ctccgactac
     1261 taagtaaaaa tgtactgcgt gatattcaaa aaatttgcgg cagtaatgaa ctcaaagatt
     1321 taactaaaat ttccaataaa aaagcattgg aacaatatgt ctatgggcgg gatttattag
     1381 acgtattacg cgattttgac ccaaacaaaa gcgtgacatt agccgattta gagccaattt
     1441 tatctaactt agccgcacga gcctattcaa ttagctcttg cggtaaaact caccctgatt
     1501 atgttgattt atgtatccgc cacgtttcgt atcatttaaa cggtagagat tatcaaggga
     1561 ctgcaagtgg gtatttatcc gaattacaag cgggcgattt tgtctcgatt tttgcaaatg
     1621 ccaatccgaa tttccgttta cccgaaacat taaccgctcc ggtggtgatg attggctcag
     1681 gtactggcat tgctccgcat atcgcatttt tacaagcgtt agagcagcaa tatcaggggg
     1741 ttgaaagcta tttattcttc ggcgagcgtt atcgtgataa agattttctg tatcaaacgg
     1801 aactggaaaa ttacttagca aaaggcacct taactcagct gtttactgct ttttcacgtg
     1861 atcaggcaga gaagttttat gtgcaagatg ccctatcgca acaagcagag ttagtttggc
     1921 atttaattca gcaaggggct tatttctata tttgtggtag caaagcaatg agtaaagcaa
     1981 tagatgcgga actcatcaaa attgcagatc aaattggagg cgatccttat attgatgatt
     2041 tcaataatat tattgcaaaa ttggtcgcag aaggccgatt aatgcgagat gtatattagc
     2101 aaatgaaaaa aactaaaaac ccagcaaaag ctgggttttt atttaatcat agttcattaa
     2161 gcaacaactg ctttctcaac tacacgaact aaagtccaag atttagtttt tgaaatagga
     2221 cgacattcct taatttcaac aacatcacct aatttagctt cattgttttc atcgtgtaca
     2281 tgaagtttag tagtacgacg gataaactta ccgtataacg gatgtttaac tgtacgttcg
     2341 atagcaacaa caaatgattt atccattttg tcgctaacca ctttaccttg tactgtacga
     2401 attttatcag tcattattca cccgcctttt cggttaatac agttttaact tgtgcaatac
     2461 tacgacgcac ttgttttaac tggtgggttt gttgaagctg accggtggct gcttgcatac
     2521 gcaatttgaa ttgttcacct aaaaggttca ctaactcacc attcagctct tcaacacttt
     2581 tattacgtag ttcttgagct ttcattacat caccgtctta gttacaaatg tggttttgaa
     2641 cggaagttta gctgccgcta atgcaaacgc attgcgtgca acttcttcag aaacaccatc
     2701 catttcatag agaactttac ccggttggat taaggctacc cagtactcaa cgttaccttt
     2761 acctttaccc atacggactt ctaatggttt ttcagtaatt ggtttgtctg ggaacacacg
     2821 gatccagatt ttaccttgac gtttaaccgc acggctcatc gcacgacgag cagcttcaat
     2881 ttgacgagct gttaaacgac cacggccaat agcttttaaa ccaaatgaac cgaagctcac
     2941 ttctgtgcca cccgcgatac cacggttacg gcctttgtgt actttacgga attttgtgcg
     3001 ttttggttgt aacattcagt gattctcctt atttacgacc tttgccacgt ggcgcctttt
     3061 taggctgtgc cgctggttct ttttcagatt caatcactgc agccattcca ccaagaattt
     3121 cacctttgaa gatccacact tttacgccga ttacgccgta agtagtgtga gcttcagcag
     3181 tactataatc gatgtctgca cgaagcgtat gtagaggtac acgaccttca cgataccatt
     3241 ctgagcgagc aatttctgca ccacctaaac gaccgctaac ttcaactttg atacctttag
     3301 cacctaattt catcgcgttt tgaactgctt ttttcattgc acgacggaac atcacacgac
     3361 gttcaagttg agaagcgatg ctatctgcga ctaatttcgc atctagctct ggttttttca
     3421 cttcagcgat gttgatttga gctggaacgc cagcgatttt cgcaactgcg ttgcgtaatt
     3481 tttcaacatc ttcacctttt ttaccgataa cgatacccgg gcgagctgtg tgaatagtta
     3541 cacgaatgct ttttgcagga cgctcaatag tgatgcgtga tacagaagcg ttcgctaact
     3601 ctttgtttaa aaatttacgt actttgaagt cgccgtctaa gttatcagcg aaatcttgtg
     3661 tattcgcgaa ccaagtagag ttccaaggtt taacaatacc taggcgaata ccattaggat
     3721 gtactttctg acccatttgt tattctccta cttaattaac gatctgacac aaccacagtg
     3781 atgtggcttg tacgttttaa aatacgatct gcacgacctt ttgcacgtgg cattacacgt
     3841 ttcatgcttg gaccttcatc aacgaagatt ttagcaactt taagatcatc gacatctgca
     3901 ccgtcattat gctctgcgtt tgcaatagct gactctaata ctttcttaac aagcgtcgct
     3961 gcttttttgt tagtgaaagt taagatttct aatgctacag aaactttttt accgcgaatt
     4021 aaatcagcaa ctaagcgagc tttttgggca gaagtacgag cgtaacgatg tttagcaata
     4081 gtttccatct tttacctctt atttcttagc tttcttatct gcggcgtgac cgcggtatgt
     4141 acgagtcggt gcaaattcac ctaatttatg accgatcatt tcgtcggaaa cataaacagg
     4201 aacgtgctga cgaccattat ggactgcgat ggtcaaacca atcattgatg gaatgatcat
     4261 tgaacgacgg gaccaagttt taattggttt tttatccccg ctttccaccg ccttctctac
     4321 cttcttcaac aagtgtaggt caaggaaagg acctttcttg agggaacgtg gcattggtgt
     4381 ttacctttta gttaatgaat taaattattt gccacgacga cgtacgatga atttatcagt
     4441 acgtttgttg tgacgagttt tcttaccttt ggtttgaacg ccccaaggtg taacaggatg
     4501 tttaccgaag ttacgacctt caccaccacc gtgtgggtga tctaccgggt tcattgcagt
     4561 accacgaaca gttggacgaa tacctctcca acggtttgca cctgctttac caagaacgcg
     4621 aagcatatgc tctgagttac ctacttcacc aatggttgca gtacactcag ctaatacttt
     4681 acgcatttcg cctgaacgaa gacgtaaagt tacatagtta ccttcacggg caatgatttg
     4741 aacgtaagca ccagcagaac gtgcaatttg accaccttta ccaggtttta attcaacgtt
     4801 gtgtacagtt gtacctactg ggatgttacg cattggtaat gcgttaccta ctttaatcgg
     4861 agctgaagca cccgcttgaa tttgatcacc agcagttaaa ccttttggtg ctaaaatata
     4921 gcgacgttca ccatctttat aaagtactaa tgcgatattc gcagaacgat ttggatcgta
     4981 ttctaaacgc tcaacaacac ccggaatgtc taatttatta cgtttaaaat caattaaacg
     5041 gtagtgttgt ttgtgaccgc caccaatgtg acgagttgtg atacgaccta agttgttacg
     5101 accaccagtt ttagatttag tatctaaaag tgctgcaaaa ggtttacctt tgtgaagctc
     5161 agcgtttaca actttaacaa cgtgacgacg accagcggag gtcggcttac atttaacgat
     5221 agccatttat tttatctcct ctgattactc tgccgcacct tcaacgaagt caagcgattg
     5281 accttcttga agagttacat aagctttttt ccagtcacta cgacgaccaa ctttagcacc
     5341 acggcgttta gttttacctt taactactac ggtacgaaca gaatcaactt ttacttcaaa
     5401 aagttcttca actgcatttg caatctcaac tttgtttgca tctaatgcaa ctttgaatac
     5461 gattgtattg cctttttctg cgttgtttgt cgctttttca gagatatgtg gtgctttaag
     5521 cacgtttagc aaacgttctt gttgaatcat gctaacatct cctcaatttg ttttactgca
     5581 tctacggtta caaccacttt atcgaaagca attaagctaa ctgggtcaat accttgcaca
     5641 tcacgcacat caactttata taagttgcgt gctgctaaga ataaattctc atctacgttt
     5701 gcagtaatga taagagcgtc atttaacgcc atatctttta atttttgtgc taatacttta
     5761 gtttttggtg catcgatttc gaatttctca acaaccacta aacggtcttg acgaactaat
     5821 tcagaaagaa tgcttttgat tgcaccacgg tacattcttt tgttcacttt ttggctgtga
     5881 tcttgtggtt tcgcagcaaa agttacacta cccgaacgcc aaattggtga tttaatatca
     5941 ccagaacgtg cacggcctgt acctttttga cgccaaggtt ttttacctga accagacact
     6001 tcagcacgag ttttttgagc acgagatcct tgacgagcac ctgctgcata agcaacaact
     6061 acttggtgga ttaatgcttc attgaactca cgtccgaagg tagtttcaga aacagttagt
     6121 gcgtttgcac ctacaacttg taattccatc tctatctcct agacttatgc tttaactgcc
     6181 ggttttacga taacatcacc attagttgca ccaggaacgg cacctttaac taataataat
     6241 ttacgctcaa catctacacg aacaacttca agtgattgaa cggttacacg ctctgcacct
     6301 aagtgtcctg ccattttttt acctttaaac acacgacctg gagtttggtt ttgaccaata
     6361 gaaccaagta cacgatgtga taaagagtta ccgtgagttg catcttgagt acggaagttc
     6421 caacgtttaa caccaccttg gaagccttta ccttttgatg taccagtaac atcgactttt
     6481 ttaacatcag taaagatgtc aacattgatt tcttgaccta aagtgaattc ttcaccttca
     6541 gtagtacgaa attcccataa accgcgtcca gcttcaacac ctgctttcac gaaatgacct
     6601 gcttctggtt tagttacacg gctagctttt ttagagccag tagtaacttg aattgcagag
     6661 tagccatcgt tttcaagggt tttaacttga gtaacacggt tggcttcgat ttcgataacg
     6721 gtaactggaa tagacacgcc gtcttcagtg aaaacgcggg tcataccaac tttacgaccg
     6781 attaaaccaa tcattgtaat aacctcttaa aattcccaat taacctagac taatctgaac
     6841 gtcaacgcca gcagctagat ctaaacgcat taatgcatca acagtttttt ctgttggttc
     6901 aacaatatca actaaacgtt tgtgagtacg gatttcatat tggtcacgtg catctttatt
     6961 cacgtgtgga gaaatcaata cagtgaaacg ttctttacga gttggtaaag gaattggacc
     7021 acgaacttgt gcaccagtac gtttagctgt ttctacgatc tccgcagtag attgatcaat
     7081 taaacgatga tcaaatgctt ttaagcggat acggattctt tggttctgca ttagaccaga
     7141 gctccaatta aaaaatttag ctaataaaaa aaccaaacta ccacttaaca aattagttaa
     7201 gggagctcag ttaaacctat atagttccaa aattaggaac attgtataca ctacaatatc
     7261 tgtagtgcca tttgataaat gattacatca aatgtcttta gatacctaaa gctttgctat
     7321 catactcgtt tcatttccct tatgcaagta atttttgttt tttatattga caataatttg
     7381 attcgat
//
LOCUS       DANMBQ010000119         7226 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.120, whole genome shotgun sequence.
ACCESSION   DANMBQ010000119 DANMBQ010000000
VERSION     DANMBQ010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7226
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.120"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..347)
                     /locus_tag="PXE92_002111"
     CDS             complement(<1..347)
                     /locus_tag="PXE92_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761319.1"
                     /translation="MKELLLTTLCLLSLPAIAMTEKAEQETANALVSGDYQQLRNVAY
                     GMETGSFGHDHNPIAACALRRVILLVNSDKVDMTDFNNEAIACRKIEVTDNQQAWETA
                     FTIAKSISATKKK"
     gene            complement(436..861)
                     /locus_tag="PXE92_002112"
     CDS             complement(436..861)
                     /locus_tag="PXE92_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein GemA"
                     /protein_id="HDL5761320.1"
                     /translation="MQPQTRKQMIQKIHIGKNELKLDDNAYKMLLLEAVDKPSCSMMT
                     DSELMTVLQTMKAKGFVVKSKKYGKRPTASKTAPHRQGLINKIGALLYQSQKPWDYAH
                     AIAKRSFGIERVQWLTDDQLHKLVQILASYNHRHGMSVK"
     gene            complement(845..1399)
                     /locus_tag="PXE92_002113"
     CDS             complement(845..1399)
                     /locus_tag="PXE92_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761321.1"
                     /translation="MKLCKCPICHSDISFEALIEDDAGRELLNTIVNIGGNCGRAVVA
                     YLGLFKPQKNSLANSRALKIVQSLLELYPPSNVLEKALMDTVEQVRRNRRETGRCEPL
                     ANHNYLKKVYESVKPQFAVVRSEAKAVSSLEQQQRQADQKKHDAVMYVERMKQMGQLE
                     AVKNTESYQIWLKWQEEKQNATAN"
     gene            complement(1399..1569)
                     /locus_tag="PXE92_002114"
     CDS             complement(1399..1569)
                     /locus_tag="PXE92_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761322.1"
                     /translation="MEYQKIPEYRLCKKKSGEIVLQQLVICELTPATWHNPYPDSRTY
                     WVDLETIEEGTE"
     gene            complement(1640..2215)
                     /locus_tag="PXE92_002115"
     CDS             complement(1640..2215)
                     /locus_tag="PXE92_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5420 family protein"
                     /protein_id="HDL5761323.1"
                     /translation="MKFRFFKGDITQEPLKSIYADYQVSKEERKDKLNAILEKYPFND
                     GLISRSGWFHRIVIGIACKATNISQVLDVKGFKVGKFNDEFYLVKPDKRYEKGKELAE
                     DFKAINEIYEKHRDFSPYILKRLNMLYFVSDFSYSPTSGRSYLAVAGICENTLLVEMP
                     MPIDKNDEPFPEIAEGLVEIKESEFLAIQGK"
     gene            complement(2238..2420)
                     /locus_tag="PXE92_002116"
     CDS             complement(2238..2420)
                     /locus_tag="PXE92_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761324.1"
                     /translation="MTEQEKNELNSQLNEALMQIIQAQKYLKQSDFIRSGVYLGTVQD
                     LLPKVHLKLLTANRKH"
     gene            complement(2487..2633)
                     /locus_tag="PXE92_002117"
     CDS             complement(2487..2633)
                     /locus_tag="PXE92_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL5761325.1"
                     /translation="MKTEQKATEFDRYKHYAEKAAEAERKGNYAEAQDHWKVAKLSAK
                     KTAN"
     gene            complement(2744..2950)
                     /locus_tag="PXE92_002118"
     CDS             complement(2744..2950)
                     /locus_tag="PXE92_002118"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761326.1"
                     /translation="MFITFNVNYTDKPVVVNTDKVCSIENINGNVTVHFCDNKKLIMM
                     DFDDKEYASLLNHLHILNQLKRKS"
     gene            complement(2952..3569)
                     /locus_tag="PXE92_002119"
     CDS             complement(2952..3569)
                     /locus_tag="PXE92_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3164 family protein"
                     /protein_id="HDL5761327.1"
                     /translation="MSKVTIGNEIYWKDADGNLKPEALVKEIDKERDELVRQFVSKAQ
                     ALSKALGDFKQSVFDDVGAFVSLSADKYGVKIGGAKGNITLFTYDGEYKLQLAVQENI
                     RFDERIHAAKALIDECLHDWSEGAKPELKALIDNAFEVDKEGNLSTAKILSLRRVEID
                     DARWNQAMTAISDSVQVIGSKGYIRFYKRDENGKYQPISLDMAGV"
     gene            complement(3582..3773)
                     /locus_tag="PXE92_002120"
     CDS             complement(3582..3773)
                     /locus_tag="PXE92_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761328.1"
                     /translation="MKKRRMIYALYVGEENVADGTAEELAERLGVEAKTVRFMSSPAH
                     NKRVKYNGKAIRTVKVGLE"
     gene            complement(3776..4096)
                     /locus_tag="PXE92_002121"
     CDS             complement(3776..4096)
                     /locus_tag="PXE92_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761329.1"
                     /translation="MQKVYSEKAGEMMNPLNAFIHDSLVKLEIATLECEAMELEVERV
                     EFEAKSPPRLVLRDNCKTQDLVKNGLASLFGMKTKGGRRYDSYQMQVRGVKCVWESER
                     VTKV"
     gene            complement(4107..4988)
                     /locus_tag="PXE92_002122"
     CDS             complement(4107..4988)
                     /locus_tag="PXE92_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5761330.1"
                     /translation="MKNQELRALMDSKGYQQKQVAQLLGVSVATVSLYLKGDYNGNVA
                     EMDRKVDELIERDKAKVVEAKYNAAFVPTLAARRGMEVMQFAHIEGEINVIFGAAGLG
                     KTQMLKEYERRNSSATLIEVDPSCTPKVLLRKIAEAVGANARGVNNELLESIVNKLKG
                     SERLLMIDEAELLSTRSLEFIRRIHDLTSVGVVLAGMPRLLVNLKGKNNELAQLYSRV
                     GFACDLGNALSEEDLGLLAESALGTNEFNAPLIKACHGNARRLSKLMRGVVRSSEINQ
                     TPISKDLVEQYSKMLIS"
     gene            complement(4992..6929)
                     /locus_tag="PXE92_002123"
     CDS             complement(4992..6929)
                     /locus_tag="PXE92_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5761331.1"
                     /translation="MKDWFSAKELAGISGLSKYPTNVTRQAKKEQWATRPLKGVKGGG
                     FEYHINSLPTEVQTEIRSRFMSAVVEAKPKKLPVVRAEVDVGNLTTKQREIADARMAL
                     VAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLAELVAVANAKKTAKRTLSVRTLNGW
                     VVDYCKAENAEQRLKLLAPQVRQETKPEEIWWLSAFLGVYRQKNGICLTEAYREFEVE
                     WAYQYADNPLLLAQCPSLSQVQRAMNKLPLYVKEYGRRTGSHYKQLLSYVKRDWSVLR
                     ANDVWIGDGHSLKLKVAHPIHGKPFTPELTMIVDGAGRKVVGWSLALSENAFAVADAL
                     RHAISLHGVPAIYYSDNGGGEKNKFLDAEITGMLPRLGIRHETGIAGNPQGRGIIERL
                     NKTIGMTIARQFETGYATGADPETVRKTLYAVNSLANAKGELTPLQRKAQGKLPTWQQ
                     LIEVIQSVIDWYNNEHIHSEIRTTPARKYQQMLHAEDVVMLSPIELRDMSRPEFIRKP
                     DRGWVSWNNNHYFNLKLLDFDREEVVIGIDIHNAESVQVRTKDGRFICEAIWNGNTRE
                     AFPVAMVEQQRKERHKRRANLKQQQLDEINAELNPVLTIEQKNDFSLLATARKPKKEV
                     EPIFLTRAEKEDYEKKLAVGG"
     gene            complement(6944..7171)
                     /locus_tag="PXE92_002124"
     CDS             complement(6944..7171)
                     /locus_tag="PXE92_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5761332.1"
                     /translation="MNKKKRAQDMHRADIRAELMKKGITFSQLGIENGLSKTTVRNAL
                     DKPYKNGEEIIAKALGKTPAEIWPSRYPDVA"
BASE COUNT         1758 a         1810 c         1275 g         2383 t
ORIGIN      
        1 tattttttct tggttgcaga aatggatttt gcaatggtaa aggcagtttc ccaagcctgt
       61 tgattatctg taacctcaat tttacggcaa gcaatcgcct cgttgttaaa gtcagtcata
      121 tcaaccttgt ccgaattaac aagcaaaata acacggcgta aagcacaagc agcaatagga
      181 ttgtgatcgt gcccaaacga accagtttcc attccgtaag ctacatttct taactgttga
      241 taatcaccac ttacaagagc atttgctgtt tcttgttcag ctttttctgt cattgctatt
      301 gctggtaacg acaataagca taaggttgtt aatagcagtt ctttcatttt aaataccttt
      361 aaaagttgat taaaaaacac ctaaaatcta ccacaaaaaa gcccactatt taaagtgggc
      421 tatgcaataa atttattatt taacactcat tccgtgccta tggttataac tcgccaatat
      481 ctgcactaat ttatgcaact gatcatctgt cagccattgc acccgctcaa taccaaacga
      541 gcgtttggca atggcgtggg cgtaatccca cggcttttgg ctttgataca gcaacgcccc
      601 gattttattt atcaaccctt gccggtgagg ggcggtttta cttgctgttg ggcgtttacc
      661 gtattttttc gacttcacca caaacccttt agctttcatt gtttgcagta cggtcattaa
      721 ttcgctatcg gtcatcattg agcagcttgg tttatccacc gcctctaaca acagcatttt
      781 ataggcgtta tcatccagtt ttagctcatt tttgccgata tggattttct gtatcatctg
      841 ctttctagtt tgcggttgca ttttgctttt cctcctgcca tttcagccaa atttgataac
      901 tttcggtgtt cttaacggct tccagttgcc ccatttgctt cattcgttcc acatacatca
      961 cggcatcgtg tttcttttgg tctgcttgcc gttgctgttg ctcaaggcta ctcactgctt
     1021 tcgcttcact tcttactact gcaaattgtg gcttcacgct ttcatatact ttcttcaagt
     1081 aattatgatt tgccagcggc tcacatctgc cagtttcacg ccgattccgt cttacttgtt
     1141 ccaccgtatc cattaaggct ttttctaaca cattagaggg agggtaaagc tccaataaac
     1201 tctgcacaat tttcaaggct cggctattgg caaggctgtt tttctgtggc ttaaataacc
     1261 ctaaatacgc caccaccgca cgcccacaat tcccaccgat attgactatc gtatttaaca
     1321 actcacgccc tgcatcatct tcaatcaacg cctcaaacga gatgtcggaa tggcaaatcg
     1381 ggcatttgca tagtttcatc attctgttcc ttcttctatt gtttcgagat caacccaata
     1441 agttcgacta tcagggtatg ggttatgcca agttgctgga gttagctcgc aaataactaa
     1501 ttgttgtaac acaatctctc ccgatttctt tttacataac cgatattcag gaattttttg
     1561 atattccatt ttatgctcct ataaaacaca ttattcagcc cacttaaata ggggttaaat
     1621 gggctgtaaa tgggttttat tacttcccct gtattgctaa aaactcactt tctttaatct
     1681 caaccaatcc ctctgcaatc tcaggaaatg gttcatcatt tttatcaata ggcattggca
     1741 tttcaaccag taaggtgttt tcacaaatgc ctgctacggc taaataactt ctacctgatg
     1801 ttggggaata actaaaatca cttacaaaat aaagcatatt caaacgtttt aagatatagg
     1861 gcgaaaaatc acgatgtttc tcataaattt cattaattgc tttaaaatct tctgcaagtt
     1921 ctttcccttt ttcgtaacgt ttatcaggtt tgacgaggta aaactcatca ttaaatttac
     1981 cgaccttgaa ccctttaaca tctaaaactt ggctaatatt ggttgcttta caagcaatcc
     2041 ctataactat tctatgaaac cagcctgacc tactaattaa tccatcattg aaaggatatt
     2101 tttctaaaat agcattgagc ttatccttgc gttcttcttt agatacttga taatctgcat
     2161 aaatgctttt tagtggctct tgggttatat cccctttaaa aaatctaaat ttcattctta
     2221 actccttact ggggtggtta atgtttccga tttgccgtta ataacttcaa atgcaccttt
     2281 ggcaacaaat cctgcaccgt gccgagataa acaccactgc gaataaagtc actctgtttt
     2341 aaatattttt gtgcctgaat aatctgcatt aacgcctcgt ttaattggct gttaagttcg
     2401 tttttctctt gttcggtcat catctcctcc taaaacggtt tcttatgcat acgtttacaa
     2461 aataccgctc gttgccccgc ccagtctcag ttagcggtct tttttgctga taattttgca
     2521 actttccaat ggtcttgggc ttctgcataa ttgcctttac gttcggcttc cgctgctttc
     2581 tcggcataat gtttgtagcg gtcaaactcg gtcgcctttt gttctgtttt cattttttcc
     2641 tcctgtggtt aaaacacttt ataaatgccc ttctatcttg tccccctctt tgaaaaagag
     2701 gggctagggg agatttttaa agggcattga aaaggttttt taactaagac tttcttttta
     2761 actgatttaa aatatgcaaa tgatttaata acgatgcata ttctttatca tcaaagtcca
     2821 tcattattaa ttttttgtta tcacaaaagt gtactgttac attcccgtta atattttcta
     2881 ttgaacaaac cttgtctgta ttaaccacaa caggtttatc cgtataatta acattaaaag
     2941 taataaacat tctaaacccc cgccatatct aaactaatcg gctgatactt tccgttttca
     3001 tcacgtttat aaaaacggat ataaccttta ctaccgatca cttgtacgct atctgaaatc
     3061 gctgtcattg cttgattcca tcttgcatca tcaatctcaa cacggcggag agagagaatt
     3121 tttgctgtag ataaattacc ttccttatcc acctcaaacg cattatcaat taaggcctta
     3181 agctccggtt ttgccccttc cgaccaatcg tgcaagcatt catcaatcaa ggcttttgct
     3241 gcgtgaatac gctcatcaaa gcgaatattc tcttgcactg ctaactgcaa cttatattca
     3301 ccgtcataag taaatagtgt gatattgcct tttgcaccgc caatttttac tccatatttg
     3361 tcagccgata ggctgacaaa agcccccacg tcatcaaata cggattgttt aaaatcacct
     3421 aacgctttgc ttaacgcttg tgctttgctt acaaattggc gaactaattc atcacgttct
     3481 ttgtcgattt cttttactaa tgcctccggc tttaaattgc catcagcatc tttccagtaa
     3541 atttcattac cgattgttac tttactcata atacttcctc tctattccaa cccgactttc
     3601 acggtgcgga ttgctttacc gttatatttc actcttttgt tgtgagcagg ggacgacata
     3661 aaccgcactg ttttcgcctc cacccccaac cgttctgcta actcttccgc cgtaccgtca
     3721 gccacattct cttcgccaac atacagggca taaatcattc gccgtttttt catttctaca
     3781 ccttcgtaac acgttcagac tcccacacgc atttcacccc ccgcacctgc atttgatagc
     3841 tgtcataccg tctgccgcct ttggttttca ttccaaacag gcttgccaag ccgttcttga
     3901 ctaaatcctg tgttttgcag ttatcccgta agaccaagcg gggtgggctt ttcgcttcaa
     3961 actccactcg ttcaacttcc aactccatcg cctcacattc caaagtggca atttctaact
     4021 tcacaaggct gtcgtggata aacgcattta aggggttcat catttcgcct gctttttcgc
     4081 tgtaaacctt ttgcataact tgctccttag ctaatcaaca tcttgctata ttgctcaacc
     4141 aaatctttac taattggtgt ttggttaatc tcgctagacc gcaccacgcc acgcattaac
     4201 ttacttaatc ggcgggcatt gccgtgacaa gctttaatta gcggggcatt aaattcattt
     4261 gtacctaacg cactttcggc taatagcccc aaatcttcct cgctcaaggc atttcccaaa
     4321 tcacaagcaa aacctactcg gctataaagc tgtgccagct cattattttt acctttaaga
     4381 ttaaccaaca atctcggcat accggctaac accacgccca cgctggttaa atcgtggatt
     4441 cggcggataa actccagcga gcgggtcgaa agtaattcag cttcatcaat cattagcaac
     4501 ctttcagagc cttttaactt gttcacaatg ctttctaata gttcgttatt tacccctctg
     4561 gcatttgccc ccaccgcctc ggcaatcttg cggagcaaga ctttaggtgt gcaactcgga
     4621 tcaacctcaa ttaatgttgc agagctgttt ctgcgttcgt attctttgag catttgggtt
     4681 ttacctaagc cggctgcccc aaaaatcaca ttaatttcgc cttcaatatg ggcaaactgc
     4741 attacctcca ttcctctgcg tgccgccaaa gttggcacaa aagcagcgtt atatttcgct
     4801 tccaccactt ttgccttatc acgctcaatc agctcgtcta ctttgcgatc catttcagcc
     4861 acattgccgt tataatcgcc tttgagatac agactgactg tggcaacgga tacacctaaa
     4921 agctgtgcca cttgtttttg ttgatagcct ttgctatcca ttaaggctct aagttcttgg
     4981 tttttcatcg tttagcctcc cactgctaac tttttttcgt aatcctcttt ttctgctcgg
     5041 gtcaaaaaaa tcggttctac ttcttttttc ggttttcttg ccgttgccag caagctaaaa
     5101 tcgtttttct gctcaatggt taaaaccggg tttaattccg cattaatctc atcaagctgt
     5161 tgctgtttaa ggttggctcg gcgtttatgg cgttctttac gctgctgttc taccatcgcc
     5221 accgggaatg cctctcgggt gttaccgttc caaattgcct cgcaaataaa cctgccgtct
     5281 ttggtacgca cctgcacgct ctcggcattg tgaatatcaa tcccgatcac cacttcttca
     5341 cggtcaaaat ccagtaattt caagttaaaa tagtggttgt tattccaact tacccaacct
     5401 cgatccggct tacggataaa ttccggtcgg ctcatatccc gcaactcaat agggcttaac
     5461 atcaccacat cttctgcgtg caacatctgc tgatatttgc gtgccggcgt ggtacggatt
     5521 tccgagtgaa tatgctcgtt gttgtaccag tcaatcaccg attggattac ttcaatcaac
     5581 tgttgccacg ttggcaattt gccttgggct ttacgttgta gtggggttaa ttcccctttg
     5641 gcatttgcca gtgagttcac cgcatacagg gttttgcgaa cggtttccgg atctgcaccg
     5701 gttgcatagc cggtttcaaa ctgtcgggca atcgtcatac cgatggtttt atttaagcgt
     5761 tcaataatgc ctcgcccctg cggattgccc gcaatccctg tttcgtgtcg gataccgagg
     5821 cggggcaaca tccccgtgat ttccgcatcc aaaaatttat tcttttcacc accaccgtta
     5881 tccgagtagt agattgccgg cacaccgtgt aggctaatgg cgtggcgtag tgcatcagcc
     5941 accgcaaagg cgttctcact gagtgccagc gaccagccca ccacttttct accagcacca
     6001 tcgacaatca ttgtcagctc aggggtaaac ggcttaccgt gtatcgggtg ggctactttg
     6061 agcttcagtg agtgaccgtc accaatccat acatcatttg ctcgaagtac cgaccaatcc
     6121 cgcttcacat agctcagtaa ctgcttgtaa tgcgagccgg tgcgtctgcc gtactctttc
     6181 acatacaacg gcaacttatt catcgctcgc tgtacttggc ttaggctggg gcattgtgcc
     6241 aacagtagcg ggttgtctgc atactgatac gcccattcca cctcaaattc tcggtaggct
     6301 tcggtgaggc aaataccgtt tttctgccga tatacgccta aaaaagcact tagccaccaa
     6361 atttcttccg gcttggtctc ctgccgtacc tgtggggcaa gcagtttcaa ccgttgctcg
     6421 gcgttctctg ccttgcagta atccaccacc cagccgttta aggttcgcac cgagagtgtg
     6481 cgttttgccg tctttttagc atttgctacg gcaaccagct ccgccaagtg cggtggcatt
     6541 tcgccttgtt tggcaaggtt gcaaaggtag gttatcgctt taatccggct cattgagcct
     6601 tccaactcca acacatacgc caccagtgcc attcgtgcat cagcaatttc tcgctgtttg
     6661 gtggtcaggt ttcccacatc cacctctgca cgcactaccg gtaacttttt cggcttggct
     6721 tccaccaccg ccgacataaa gcgggagcgg atttcggttt gaacttcggt gggtaaagag
     6781 ttaatgtgat attcaaaacc acctccttta acccctttca atggacgagt tgcccattgt
     6841 tcttttttgg cttgtctagt tacatttgtt gggtattttg ataagccact aatacctgct
     6901 aattcttttg cactaaacca atctttcata acagctatcc ttgttatgca acatcagggt
     6961 aacgactagg ccatatttcg gctggcgttt ttcctaatgc ttttgcgata atttcttcac
     7021 cgtttttata aggtttatca agagcatttc ttactgttgt tttggaaagc ccattctcaa
     7081 tccctaactg agaaaatgtt attcctttct tcatcaattc agctcgaata tcagctctat
     7141 gcatatcttg agctcttttc tttttattca ttttgtgaga tcctccacat ttagtttatt
     7201 tgctacgctt tagcgtactt gattaa
//
LOCUS       DANMBQ010000120         7188 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.121, whole genome shotgun sequence.
ACCESSION   DANMBQ010000120 DANMBQ010000000
VERSION     DANMBQ010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7188
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.121"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            126..602
                     /locus_tag="PXE92_002125"
     CDS             126..602
                     /locus_tag="PXE92_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1441 family protein"
                     /protein_id="HDL5761333.1"
                     /translation="MDNLFDLKLNINQIAELTGLHRQTVSQRVAGLNPALGSNSKLKL
                     YALRDLILTGLAEKMSADVDSLSPADRRAWFQSENERLKFEKEIGELIPASEVALEMS
                     ALAKTVVQALETLPDILERDCGLQPKDLIRVQQVTDDVRDQMALHIQEVTTDTENE"
     gene            602..2713
                     /locus_tag="PXE92_002126"
     CDS             602..2713
                     /locus_tag="PXE92_002126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HDL5761334.1"
                     /translation="MFASAKEIRRDIANAIKAPRRMRVSEAVAEYMRVPLGGGNSVKW
                     DKHTAAYMLEPMDCLNSREYDAVIFVGPARTGKTIGLIDGWITYSIICDPSDFLLVQL
                     TQEKASEHSRKRLDRTFRCSPEIAKRLSPRKNDNNVHDKYFRAGNLLKIGWPSINVLS
                     SSDYKYVALTDYDRWPEDVDGEGDGFSLASKRTTTFMSAGMTLVESSPGKDIVDLKHI
                     PKSTHEAPPTTGILSLYNRGDRRRFYWQCPDCSEYFEPSMANMVGYREDSDFVKASEN
                     ARLQCPHCQTLIAPELKRELNIKGVWLKEGQKIDASGQISGESRKSRIASFWLEGPAA
                     AYQTWAQLTYKLLNAEHEYEMTGSEETLKAVTNTDWGLPYLPRSALEQRRSDELMERR
                     EEVEEKTVPAQCRFIVAAVDVQGGKNRRFVVQMVGYGENGERWLIDRYNISHTLPDSD
                     GVIEKIDPRIPDDWYILISDVLEKRYPLAHNPNHFMPILAMAVDSGGEDGVTDNAYQF
                     WRKCRRDGYAKRVYLVKGDSTKRQKLITKTYPDNTARSDRHSSARGDVPLYLLQTDYL
                     KDRINNALFRDTVGANYIHFPDWLGEWFFNELTYEERGADGKWRKPGKGNNEAFDLFC
                     YAHAIAILRGYERIKWGDENDVPSWAKLPDINPNIIRETPRTAEQAVEIEEKSEKPQP
                     KPTKAKSSWLSGGGRKTGGWL"
     gene            2710..2934
                     /locus_tag="PXE92_002127"
     CDS             2710..2934
                     /locus_tag="PXE92_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761335.1"
                     /translation="MSLYTIDELKQKIRTLDEKIETAQSQVSFNGRSVSYQVAELTKQ
                     RDRYQTMLDEQLAQSGQRTKQHRIKYARFI"
     gene            2934..4433
                     /locus_tag="PXE92_002128"
     CDS             2934..4433
                     /locus_tag="PXE92_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL5761336.1"
                     /translation="MNFLEKTIATLSPKWAANRSRNRYVLNAYEAAQPSRTHKASRES
                     KGANSTVRQSAVSLREQARALDQNHDIVIGILDKMEERVIGSKGIHIEPQPLTLAGEV
                     HEELAGQIRKLWAEWSVKPDVTGLYTRPLLERMLLRTWLRDGEVFVQLVKGKVAGLEH
                     GSQVAFSLEALEPDFVPMQSDEAKNGLVQGVFLNAWRKPTAYQVYLDNPQESNGMYGK
                     VKTVPADNMLHLAFRKRLHQIRGVSMLHGVIVRLADLKEYEESERVAARIAAAMTMYI
                     KKGDAALYDDDSNSDGERLFDIAPGAVIDDLKPGEDIGLINSNRPNVNLETFRNGQLR
                     ATAAGTRSSYSSIARDYNGTYSAQRQELVESFEGYAVLQDAFVAAISRPIYREWLKMA
                     IASQAIKLPPDIDQNSLFNAVYSGPVMPWIDPIKEANAWKERIKGGLATEGQAIRASG
                     NNPAEVKRQRIVEIKENQAEGLKFDTDLTNYGGQDKSFSNQKDEINEDE"
     gene            4445..6406
                     /locus_tag="PXE92_002129"
     CDS             4445..6406
                     /locus_tag="PXE92_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HDL5761337.1"
                     /translation="MKTWFNIQAKANDTAEISIFDEIGFWGVTAQQFAKDLKALGNNL
                     KQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGDEIIMPEN
                     AMMMIHKPWGIQGGDADDMRKYADLLDKVESTLIMAYVAKTGKYETDLAEMLKEETWL
                     TGKECVEQGFADKLAEPLVAMACIQSKKLEDYTKMPDKIKNMLFAPQGNAGANPKHEQ
                     PQTPPQAGENPQNVAKPDAMVALAQRNATIKATFAAFGTQFDGLLAECLADVSMTAEQ
                     AKDKLLAKLGENTTPSVPQNHIHAGNGNIVGDSVKQSLMARAGQDTDKTNARDNAYNA
                     MTLRELARASLVDRGVGIAGYTPMQMVGLAFTHSSSDFGQILIDVAHKSLLKGWETAT
                     ENYEQFTTRGTLTDFRPAKRVGLGEFGYLPEVGEGEEYTYGTIGDEGASVALATYGQL
                     FSITRQAIINDDMHLLTKIPEKMGAAAKATITKLVFALITGNATAQDGKKLFDATHKN
                     SLTGAALNVENIDKAIQLMNGFVNSRGEPLSIEPEFMLLPTSLHTKAKQILGSSSVEG
                     ADINSGIINPIRDIVSPIKSPRLQIADPKSWYLLNKEAIEVSYLDGVDSPYIEQQHGF
                     TVDGVSTKVRIDAGVNVIDYRGVVKVTNA"
     gene            6480..6803
                     /locus_tag="PXE92_002130"
     CDS             6480..6803
                     /locus_tag="PXE92_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2190 family protein"
                     /protein_id="HDL5761338.1"
                     /translation="MAKNYIQDGNTVRLTATKAITSGDVIVAEDLIAIAVSDAAKNDA
                     VVGLTTGVFSVKAKQADDIKQGAVLYWSETEGATLTAGSNKRLGIAWKDSGTSSNQVD
                     VKINV"
     gene            6796..7098
                     /locus_tag="PXE92_002131"
     CDS             6796..7098
                     /locus_tag="PXE92_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761339.1"
                     /translation="MSSPFEQAIAAADQTIQQTMMSEWLIGGKPYPATFDEAPAIFNG
                     LHSTDDRAIHGTERTLTLFRASGYKPRLDDRVSGNGKKYLVKSYHFVDQLIVLQLE"
BASE COUNT         2130 a         1673 c         1767 g         1618 t
ORIGIN      
        1 gggatacccc tttccacggg gttgcggcag cgtggttttc ggcaattttt tgagtttcta
       61 ggcatcatca tcttcctatg atgttgctgt tttttaggcg gttttgattt ttaggatttg
      121 agcaaatgga caacttattt gatctaaaac ttaacatcaa tcagatcgcc gaactcacag
      181 gattgcaccg ccagacggta tctcagcgag tcgctgggtt aaatccagca ctcggtagta
      241 atagcaaatt aaaactctat gctctgcgtg atttaatcct caccgggttg gcggaaaaga
      301 tgtcggcaga tgtcgatagc ctatcacctg ctgatcgtcg tgcgtggttc cagtcggaaa
      361 acgaaagact aaaatttgaa aaagaaattg gcgagcttat cccagcaagc gaagtggctc
      421 ttgaaatgtc agctttagca aaaacggtag tacaagcctt agaaaccttg cctgatattt
      481 tagagcgaga ctgcggattg cagcctaaag atttgatacg agtgcagcaa gtaactgacg
      541 atgtacgaga ccaaatggca ttacatatcc aagaagttac cactgacacg gagaatgaat
      601 aatgtttgct agtgctaaag aaattcgacg tgatatagca aatgccataa aagcacctcg
      661 gcgaatgaga gtgtcagaag cagtagcgga atatatgcgt gtaccacttg gcggaggcaa
      721 ctcggtcaaa tgggataagc acaccgccgc ctatatgtta gaaccgatgg actgcctcaa
      781 tagccgagaa tacgatgcgg tgatttttgt cggcccggca cgaacgggta aaaccatcgg
      841 cttgattgac ggctggataa cctactcaat tatctgcgat ccgtctgatt tcctgttggt
      901 gcaacttacc caagagaaag ctagcgaaca tagccgaaaa cggcttgacc gcacattccg
      961 ctgttcgccc gaaattgcca agcggctaag cccacgcaaa aacgataaca atgtccacga
     1021 caagtatttc agagcgggca acttgctcaa aatcggctgg ccgtctatca atgtgctttc
     1081 ttcatcggac tacaaatatg ttgctctgac tgactacgac cgctggccgg aagatgtgga
     1141 cggagagggc gacggtttct cgcttgcctc aaagcggacg accaccttta tgtcagcagg
     1201 aatgactttg gtggagagtt cgcccggtaa agatattgtt gatctcaaac atatcccgaa
     1261 aagcacccac gaggctccac cgactaccgg tattttaagc ctctataatc gaggtgatcg
     1321 ccgtcggttt tactggcaat gccccgactg ctccgaatac ttcgagccgt caatggcaaa
     1381 tatggtcggc taccgtgaag acagtgattt tgtcaaagcc agcgaaaacg cacggttaca
     1441 atgccctcac tgccaaaccc tgattgcccc cgaactcaaa cgagagctaa atatcaaggg
     1501 cgtatggctc aaagaggggc aaaaaattga tgcaagcggt caaattagtg gcgaaagtcg
     1561 caaatcccgt attgcctcct tttggcttga agggccagcg gcagcctacc aaacgtgggc
     1621 gcagctcacc tacaaactgc tcaatgccga acacgaatat gaaatgactg gcagtgagga
     1681 aaccctcaaa gcggtaacaa ataccgactg ggggttacct tacttaccac gatctgcatt
     1741 agaacaacgc cgttctgatg agttgatgga acgccgagaa gaagtagaag agaaaactgt
     1801 accagctcaa tgtcgcttta ttgtggcggc ggtggacgta cagggcggta aaaaccgccg
     1861 atttgtggtg caaatggtcg gttacggtga aaatggcgaa cgctggttga ttgaccgcta
     1921 taacatctca catactttgc ccgacagtga tggcgtgatt gaaaaaattg accctcgtat
     1981 tcccgatgat tggtacatac tgatttcgga cgtactagaa aaacgctacc cacttgccca
     2041 caatccaaac cactttatgc cgattttggc gatggcggtg gacagtggcg gtgaagatgg
     2101 ggtaaccgat aacgcctacc aattttggcg caaatgccgc cgagatggct atgcgaaacg
     2161 agtctattta gtcaaaggcg acagcaccaa acggcaaaag ctgattacca aaacttaccc
     2221 cgacaatacc gcacgaagtg accgccactc ctccgcacgg ggcgatgtgc cgttgtactt
     2281 gctccaaacc gactacctca aagatcggat taacaacgcc ctgttccgtg atacggtggg
     2341 ggcgaactac atccacttcc ccgactggct aggtgaatgg ttttttaacg aattgaccta
     2401 cgaagaacga ggagcggacg gcaaatggcg gaaaccgggc aaaggcaata acgaagcctt
     2461 cgacctgttc tgctatgccc acgccattgc aattttacga ggctacgaac gaatcaaatg
     2521 gggcgatgaa aacgatgtgc caagctgggc aaaactgccc gacatcaacc ctaatatcat
     2581 tcgggaaacg ccaagaacgg ctgaacaagc ggtcgaaatt gaagaaaaat ccgaaaaacc
     2641 acaacctaaa cccaccaaag caaaaagcag ttggttaagt ggtggcggta gaaaaacagg
     2701 aggctggcta tgagccttta caccatagac gagcttaaac aaaaaatccg cacgcttgat
     2761 gaaaaaatcg aaaccgccca aagccaagtg agctttaatg gtcggtcggt ttcatatcaa
     2821 gtggcggaac taaccaaaca gcgtgatcgc tatcaaacaa tgctggatga acaacttgcc
     2881 caaagcgggc aacgcaccaa acagcatcga attaaatatg cgaggtttat ttgatgaact
     2941 tcctcgaaaa aaccattgcc accctttccc cgaaatgggc ggcaaatcgc tctcgaaatc
     3001 gctatgtgct aaatgcctat gaggcggcac agcctagccg aacccataag gcaagccgag
     3061 agagcaaagg ggcaaactct actgttcgcc aaagtgcggt cagcctacgg gaacaagccc
     3121 gagccttaga ccaaaatcac gatattgtga tcggcattct cgacaaaatg gaagagcggg
     3181 tgattggctc aaaaggcatt catattgaac cgcagccgct gacgttggca ggtgaagtcc
     3241 acgaagaatt agctgggcaa atccgaaagc tgtgggcgga atggtcggtg aaacctgatg
     3301 tgacgggatt atacactcgc ccattgctag aacgaatgct acttcggact tggctacgag
     3361 acggcgaagt ctttgttcag ttggtgaaag gcaaggtggc agggttagaa cacggctcac
     3421 aggttgcttt ttcccttgaa gccttagagc cggattttgt gccaatgcaa tccgatgagg
     3481 caaaaaacgg cttggtgcaa ggcgtgtttc tcaatgcgtg gcggaagccg actgcttacc
     3541 aagtctattt agacaatccg caagaaagca acggaatgta cggcaaagtg aaaaccgtgc
     3601 cggcagacaa tatgttgcac ctcgcctttc gcaagcggtt acatcaaatt cgtggtgtaa
     3661 gtatgttgca cggtgtgatt gtgcgattgg cggatctgaa agaatacgaa gagagcgaac
     3721 gagttgccgc tcgcattgcc gccgcaatga cgatgtacat taaaaaaggc gatgcggcac
     3781 tgtatgatga cgacagtaac agcgatggcg aacgcctgtt tgatattgcc cccggtgcgg
     3841 tgattgatga tttaaaaccg ggtgaagaca tcggcttaat caattccaac cgcccgaatg
     3901 tgaatttgga aactttccgc aatggacaac tgcgagccac tgccgccggt actcgttcga
     3961 gctattccag catcgcccga gactacaacg gcacttactc tgcacagcga caagagctgg
     4021 ttgaaagttt tgaaggttat gcggtgctac aagatgcgtt tgtggcggca atcagccgcc
     4081 cgatttatcg ggaatggctc aaaatggcaa tcgcctcaca agcgatcaaa ctgccgcctg
     4141 atattgacca aaactctctc tttaatgcgg tttattcagg tcctgtaatg ccgtggattg
     4201 acccaatcaa agaggcgaat gcgtggaaag aacgaattaa aggcggttta gccaccgaag
     4261 ggcaagcaat ccgagccagt ggcaataacc cagccgaagt caaacggcaa cgaattgtcg
     4321 agatcaaaga aaatcaagcc gaagggctaa aatttgatac cgatctcacc aattacggtg
     4381 ggcaggataa atctttctcc aatcaaaaag atgaaattaa cgaagatgaa taacaggagg
     4441 gtgcgtgaaa acgtggttca acattcaagc caaagcgaat gacaccgccg aaatctcaat
     4501 ttttgacgaa atcggctttt ggggtgtcac cgcccaacaa tttgctaaag acttaaaagc
     4561 ccttggcaac aatttaaaac aaatcaatct gcatatccac tcgcccggtg gtgatgtgtt
     4621 tgacggcatt gccatttaca acctgctaaa aaatcaccct gctaacaaga ccgtctatat
     4681 tgacggtctt gccgcatcaa tggctagcgt aattgcaatg gcaggtgatg aaatcattat
     4741 gcctgaaaac gctatgatga tgatccacaa accgtggggc attcaaggcg gtgatgcgga
     4801 tgatatgcgt aaatatgcgg atttactgga taaggttgaa agtacactga ttatggcgta
     4861 tgtcgccaaa acaggtaaat acgaaaccga tttggcagaa atgctgaaag aagaaacttg
     4921 gctcacaggc aaagagtgcg tggagcaagg tttcgccgat aagttagccg aaccccttgt
     4981 ggcgatggct tgtatccaat ccaaaaaatt agaggactac acaaaaatgc ctgacaaaat
     5041 caaaaatatg ctattcgcac cacaaggcaa cgcaggtgca aatccaaaac atgaacaacc
     5101 tcaaacacca ccacaagcgg gtgaaaatcc gcaaaatgtg gcaaaacctg atgcaatggt
     5161 ggcattagcc caacgcaatg caacgattaa agcgaccttt gccgctttcg gcacacaatt
     5221 tgacggcttg ctggcagaat gtttagctga tgtgtcaatg accgctgagc aagccaaaga
     5281 caagctcctt gccaaactgg gcgaaaacac caccccaagc gtaccgcaaa accacattca
     5341 cgcaggtaac ggtaacatcg ttggcgacag cgtgaagcag tcgttaatgg ctcgtgctgg
     5401 tcaagatacc gacaaaacca acgcaagaga taatgcctac aatgcaatga ccttgcgtga
     5461 gttggctcgt gcctcattgg ttgatcgtgg cgtgggtatt gcgggctaca ccccaatgca
     5521 gatggtcggt cttgccttta ctcattcgag ctccgacttc ggtcaaatct tgattgatgt
     5581 ggctcataaa tccctactca aaggctggga aaccgctacc gaaaactacg agcagtttac
     5641 cacccgtggc actcttactg acttccgacc ggcaaaacga gtcggtttag gtgagtttgg
     5701 ctacctgccg gaagtgggcg aaggtgaaga atacacctac ggcacaatcg gtgatgaagg
     5761 tgcatctgtt gcattggcga cttacggaca actgtttagc attacccgtc aggcgattat
     5821 caatgacgat atgcatcttt taactaaaat ccctgagaaa atgggtgcag cagccaaagc
     5881 gactattacc aaactggtgt ttgccttgat taccggcaat gcgacagccc aagacggtaa
     5941 aaagctgttt gatgctacac ataaaaacag cttaacgggt gcggcattga atgtggaaaa
     6001 cattgacaag gcaatccagt taatgaatgg ctttgtaaac agccgtggtg aaccgctctc
     6061 tattgagcca gaatttatgc tgttaccaac ctcattgcat accaaagcaa aacagattct
     6121 tggttcgtca agcgtggaag gtgcagacat caacagcggt atcattaacc cgatccgtga
     6181 tattgtcagc ccgattaaat cgcctcgctt acaaattgca gatccgaaat catggtactt
     6241 gctcaataaa gaggcgattg aagtctctta tctggacggg gtggatagcc cttacatcga
     6301 gcaacagcac ggctttacgg tggacggtgt ttcgaccaaa gtccgtatcg atgctggtgt
     6361 gaatgtgatt gactaccgtg gtgtggtgaa agtgaccaac gcttaattta aacaatttaa
     6421 aacctgaccg cacttttaac agtgcggttt tttattatcc gaaaaaagga aaaagagata
     6481 tggctaaaaa ctatattcaa gacggcaata ccgtgcgttt aactgcaacc aaagcgatta
     6541 cttccggcga tgtcattgtg gcggaggatt taattgcgat tgcggtttct gatgcggcaa
     6601 aaaatgatgc agtagttggc ttaactaccg gtgtttttag cgtaaaagct aaacaagcag
     6661 atgacatcaa acaaggtgca gtgttgtact ggtctgaaac agagggcgca actctcaccg
     6721 caggctcaaa taaacgactt ggcattgcgt ggaaagactc tggcacatca tctaatcaag
     6781 ttgatgtgaa aatcaatgtc tagcccgttt gagcaggcaa tagctgccgc cgatcaaact
     6841 attcagcaaa ctatgatgag tgagtggttg attggcggca agccttaccc tgcaactttt
     6901 gatgaagccc ccgctatttt taacggttta cactcaaccg atgacagagc tattcacggc
     6961 acggaacgca cactgaccct atttcgggcg agtggctaca aaccgagatt ggacgaccga
     7021 gtgagcggaa atggcaagaa ataccttgtt aaatcctatc actttgtcga tcagttaatc
     7081 gtattgcaat tggagtaaac aatgggttct caagtgaccg gtttaaaaga actgcaagcc
     7141 tccctgaaaa aaatagctag gcaaaccgta cctaaagcag ccgctcaa
//
LOCUS       DANMBQ010000121         6895 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.122, whole genome shotgun sequence.
ACCESSION   DANMBQ010000121 DANMBQ010000000
VERSION     DANMBQ010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6895
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.122"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..383)
                     /locus_tag="PXE92_002132"
     CDS             complement(<1..383)
                     /locus_tag="PXE92_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761340.1"
                     /translation="MITSNLERSFHGLNIAQHNYKIFLDESGGNIGKLKHTPNDKKGS
                     NFNRTISSHIGVPPVFVLGGIAQISNANLIAPDWRKLLHLQNKELKFSKIGKNFFNKL
                     GSKELRKVLEWINENNLCIHFALYD"
     gene            complement(410..1084)
                     /gene="cas4"
                     /locus_tag="PXE92_002133"
     CDS             complement(410..1084)
                     /gene="cas4"
                     /locus_tag="PXE92_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated protein Cas4"
                     /protein_id="HDL5761341.1"
                     /translation="MGDLQNSAEILPLVQPKFGDDKRSISLSALQHYAFCPRQCALIH
                     NEQVWAENYLTAQGQALHERVDSGEPEVRKGIRFERTVHVAAEKLGISGILDLVERDL
                     KTGELKPVEYKRGKPKLDPIDEIQLCAQALCLEEMTEQTINEGALWYMQTRHRLPIIF
                     STELRTKTLATIAEVRSLLDSGTTPPPEYSKRCKACSLIDLCQPKLLERDRSKGYVVG
                     VFGSLL"
     gene            complement(1084..1947)
                     /gene="cas7c"
                     /locus_tag="PXE92_002134"
     CDS             complement(1084..1947)
                     /gene="cas7c"
                     /locus_tag="PXE92_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas7/Csd2"
                     /protein_id="HDL5761342.1"
                     /translation="MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPETSKGLVTDV
                     CLKRKIRNFIEMSYENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKEEAKAR
                     EITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIIPLEVSITRMAVTN
                     EKDLEKERTMGRKYIVPYALYRVHGFISAKLAEKTGFSDEDVQKLWQALQLMFEHDRS
                     AARGEMAARKLIVFKHDSELGNQPAHKLFDSVKVERINGEKDTPAKDYDDYCISVQTE
                     GLTGVTVEELL"
     gene            complement(1957..3738)
                     /gene="cas8c"
                     /locus_tag="PXE92_002135"
     CDS             complement(1957..3738)
                     /gene="cas8c"
                     /locus_tag="PXE92_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas8c/Csd1"
                     /protein_id="HDL5761343.1"
                     /translation="MITALTRYYYRLAAQEDRLTGEAKVPSYGFSEEKIGWVLELDSK
                     GNLVNVISNLTEDKKPKPKLMSVPRPEKRTSGIKPNFLWDKTAYVLGIESNPDKATAK
                     DQPINFAEKTFEAFKQYHLDLLADSNDEGLMAIRNFLQQWQPTHFAESICPREILDAN
                     VVFKLVGTSGYIHQREAAQTLWTSLLINQSDNAEKGLCLISGKLSPIQRTHPPIKGVF
                     GGQSSGGSIISFNKESFTSFGKEQGSNAPVSEQAAFAYTTALNYLLRTEKHRLTIGDA
                     STVFWAEADNTTQAEAAEGFFAALMTPPDDEQENQKIFEELQKISKGRPLAEISPELS
                     ENTRFYVLGLAPNAARISVRFWLDTTFGQLAKNLSEHWQDLALEPCPWKTPPSIWRLL
                     LQTASLGKSENISPVLAGEMARAVISGHLYPMSLLSQLVTRIRADGDINGLRVALMKA
                     VLQRKFRKGFIKEGVPMSLNKESDNQAYLLGRLFAVLERIQSQALGELNAGIADRYYG
                     SASAVPFSVFPRLLSGAKHHLSRLRKDKGGMAVNLDKDLGEIIASLPENFPRHLSIDE
                     QGRFAIGYYHQKQSYFAKKETTESIEN"
     gene            complement(3760..4437)
                     /gene="cas5c"
                     /locus_tag="PXE92_002136"
     CDS             complement(3760..4437)
                     /gene="cas5c"
                     /locus_tag="PXE92_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas5"
                     /protein_id="HDL5761344.1"
                     /translation="MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVH
                     WKPAIRWVIDKIYVLQPIQFESVRRNELGSKISASKISGAMKRKTVADLYTVIEDDRQ
                     QRAATVLKNVGYVIEAHAVLTKMAGEAETVTKHIEMFKRRAKKGQCFQQPCMGVREFA
                     ANFALIDDDEPLPECFLAENERDRDLGWMLHDIDFEHGNQPRFFRAEMKNGVIDVPPF
                     YAEEVKS"
     gene            complement(4679..6430)
                     /locus_tag="PXE92_002137"
                     /pseudo
     CDS             complement(4679..6430)
                     /locus_tag="PXE92_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250669.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
     gene            complement(6420..6848)
                     /locus_tag="PXE92_002138"
     CDS             complement(6420..6848)
                     /locus_tag="PXE92_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761345.1"
                     /translation="MAGDVPMTSCIGKVEEPLIITPGVGKYKKGYGQPFDAHREKANE
                     AIDSASSILCIGYGFNDDHLQTHLTGKIKSGVKTLLLTRGLSENARNVVKEAPNCKAL
                     IFDGDKAGTRVVSKQEETFIPNVHWWDVEFFVKEILENGK"
BASE COUNT         1928 a         1572 c         1287 g         2108 t
ORIGIN      
        1 caatcataca aagcaaaatg tatacatagg ttattttcat taatccattc caagactttt
       61 cttaattctt ttgaaccaag tttattaaaa aaattctttc ctattttact aaactttaat
      121 tccttattct gcaaatgaag gagttttctc caatcaggag caattaaatt agcattacta
      181 atttgagcaa tccctcctaa tacaaataca ggaggaaccc caatgtggga agaaatggtt
      241 ctattaaaat tactaccttt tttatcatta ggcgtatgtt ttaacttccc aatatttcca
      301 ccactctcat caagaaatat tttgtagtta tgctgtgcta tatttaatcc gtgaaatgat
      361 ctttctaagt ttgaagttat cacaacaagt ccctccccaa agtaggtaat tataataaag
      421 atccaaacac tcccaccaca taccccttcg atctatccct ttccaacaac tttggttggc
      481 agaggtcgat aagcgagcag gctttgcagc gtttgctgta ttctggagga ggtgtggttc
      541 cgctatctaa gagcgaccgc acttcggcaa tggtggcgag ggttttggtg cgtagttcgg
      601 tggaaaaaat gatcggcaaa cggtggcgag tttgcatata ccacaacgcc ccttcgttaa
      661 tcgtctgctc tgtcatttct tccaaacata aggcttgggc acagagttgg atttcatcaa
      721 tcggatcaag tttgggcttg ccacgtttgt attccactgg ttttagctcg cctgttttta
      781 ggtctcgctc aaccaaatcc aaaatgccgc ttatgcctaa tttttcggct gcaacgtgaa
      841 ccgttcgctc aaagcgaatc cctttgcgaa cttctggctc accactatct acccgctcgt
      901 gcaacgcttg accttgtgcg gtgagatagt tttctgccca cacctgttcg ttgtggatca
      961 gcgcacattg acgtgggcag aaggcatagt gttgcaaagc ggaaagcgaa attgaccgct
     1021 tgtcatcgcc aaattttggc tgaacaagcg gtaaaatttc cgcagaattt tgcaaatcgc
     1081 ccattacagt aattcttcaa cggttacacc cgttaagcct tcggtttgta cgctgataca
     1141 gtaatcgtca tagtctttcg ctggcgtgtc tttttcaccg ttgattcgct caacttttac
     1201 cgagtcaaac agtttgtgtg caggttggtt gcctaattcg ctgtcgtgtt taaatacgat
     1261 cagtttacga gctgccattt cgcctcgtgc ggcagaacgg tcgtgttcaa acataagttg
     1321 caaggcttgc caaagttttt gtacatcttc atcagaaaag cccgtttttt cagcgagttt
     1381 agctgaaata aagccgtgaa cacgataaag tgcgtaaggc acgatatatt tacgccccat
     1441 agtccgttct ttttcaagat ctttttcgtt ggtcactgcc attcgtgtga tcgatacttc
     1501 tagcggaata atcggatcga tagattgagc gaacgccaat tgcactgggc ctcgcacctg
     1561 tccgctgttt acttcggtag tcattaccgc cccaaaggtg cgaatatcga aaaagttttt
     1621 gcacatccaa gcggtaattt ctcgggcttt agcttcctct tttggtagtt ttttcgcttc
     1681 cgattcaatc cctaatgctt cataagcacg tttgttttgt aaattcagaa cacttttttc
     1741 tttaacataa atttcgtaac ccgcctcgtt ttcatagctc atttcaataa aattgcggat
     1801 tttgcgtttt aggcaaacat cggtgactaa acctttactg gtttcaggat caaggcgtgg
     1861 catatttcct gcatctggat caccatttgg gttaccgttg gttacatcaa agaaaaaaac
     1921 aaattcatag cggttttgaa tagacatagt gtttccttag ttttcaatag actcagtggt
     1981 ttctttttta gcgaaatagc tttgtttttg gtggtaataa ccaatcgcaa aacgcccttg
     2041 ttcatcgata cttaaatggc gagggaaatt ttccggcaag ctggcaataa tctcacctaa
     2101 atccttatcc agattaaccg ccattccgcc cttatctttt ctcaagcgag ataaatggtg
     2161 ttttgcaccg cttaataagc gagggaatac cgaaaacggc acggcagaag ccgaaccata
     2221 atagcggtcg gcaatgccgg catttaattc gcctaatgct tggctttgga ttctttctaa
     2281 tactgcaaat aacctgccga gcaagtaagc ttggttatcg ctttctttat ttaagctcat
     2341 aggaactcct tctttaataa aaccttttct aaattttcgt tgtaagactg ctttcatcaa
     2401 cgctactcgc aaaccgttaa tatcgccgtc tgctcggatt cgagtcacta actgtgaaag
     2461 taaactcatc ggatataaat gaccgctaat aactgcgcga gccatttcac ccgccaagac
     2521 tggagaaata ttctcacttt tacctaatga agcggtttgt aataatagtc gccaaatgga
     2581 aggtggtgtt ttccatgggc aaggctcaag agcgagatct tgccaatgct cgctgaggtt
     2641 ttttgccagt tgcccaaagg tggtatccag ccaaaaacgt accgaaatgc gagctgcatt
     2701 tggagcaagc cccaacacat aaaaacgggt gttttcagat aattctgggg aaatttctgc
     2761 aagcggtcgt cctttgctga ttttttgcaa ttcttcaaag attttttggt tttcttgctc
     2821 atcatctgga ggcgtcatta aagcagcaaa aaagccttca gcagcttcag cttgggtggt
     2881 attgtctgct tctgcccaaa agacagtgct ggcatcacca atagttaaac gatgtttctc
     2941 ggtgcgtaac aaataattta aagcagtagt gtaggcaaag gcggcttgtt cagaaacagg
     3001 ggcattacta ccttgttcct tgccaaatga agtgaaggat tctttattga aagagatgat
     3061 tgaaccaccg gaactttgcc caccaaatac ccctttaata ggaggatgag ttcgttgaat
     3121 tggcgataat ttgcctgaaa ttaagcataa acctttttca gcattatcac tttgatttat
     3181 caacaaactt gtccaaaggg tttgtgcagc ttctcgctga tgaatataac cgcttgtgcc
     3241 gactaattta aacacgacat tcgcatcaag aatttctctt gggcagattg attcggcaaa
     3301 atgtgtgggt tgccattgtt gcaggaaatt tcttatcgcc attaaacctt catcattgga
     3361 atctgcaagc aaatccaaat ggtactgttt aaatgcctca aaggttttct cggcgaaatt
     3421 gatgggttga tctttggcgg tggctttatc aggattactt tcaatgccta gcacataagc
     3481 ggttttatcc cacagaaaat tgggcttaat gccagacgtg cgtttttcag ggcgaggtac
     3541 gctcatcaat ttcggttttg gtttcttatc ttctgttaaa tttgagatca cattgaccaa
     3601 atttcccttt gaatctaatt ctagtaccca accgattttt tcttcactga aaccataaga
     3661 aggcacttta gcttcgcctg ttaagcgatc ttcttgtgct gcaaggcggt aataatagcg
     3721 agttaaggcg gtaataatag cgagttaagg cggagagaat catgatttga cctcctctgc
     3781 ataaaatggt ggcacatcaa tcacgccatt tttcatttcc gcacggaaga aacgaggttg
     3841 attaccgtgc tcaaaatcaa tgtcgtgcaa catccagcct aaatcccgat ctcgctcatt
     3901 ttctgccaaa aaacactcag gtaacggttc atcgtcatca atcaaggcaa aatttgcggc
     3961 aaattcacgc acgcccatac aaggctgctg gaaacattgc ccctttttcg cacggcgttt
     4021 aaacatttca atatgcttgg tgacggtttc cgcctcgcct gccattttgg tcagcactgc
     4081 gtgagcttcg atcacataac cgacattttt cagcacagta gcagcacgtt gttggcggtc
     4141 gtcttcaatc acagtatata aatccgccac tgttttacgc ttcattgcac cactgatttt
     4201 actggcagaa attttactgc ctaactcatt acggcgaaca gactcaaatt gaatcggttg
     4261 taatacataa attttatcaa tcacccagcg aattgccggc ttccaatgca ccgcagccaa
     4321 aatcccccgt gccgcagacg gcgtaatcac atcataagac acccgttcta ccttcatttc
     4381 aggacgggta aaacaagcat aatcacccca aatatggagc ctgattttgt ttggcataat
     4441 agaatgctcc ttttaattat gtaacacaca cctccccgaa gggaggtgaa atttctttag
     4501 cttatattat aactgctttg gtttcaaccc acgcactcag taaaatgcga aaaattttat
     4561 ggcttattat attaagcggt cggatttact tagaaagttg caaagttatt tgagtattta
     4621 accgcttgta tttcaaaaat agtcagaaaa ataacagcat tctaggtaca atatttttct
     4681 aagaacgaac ttgtctccgc aatgcctcta ctgcgtttga cacagcattt ggtttgggct
     4741 cctggtttgc ccaatcagac cagaattggc gtgtagcact ttctggggct atatgcggtt
     4801 tagcaagttt gattcgtgta ggtaatagaa tcgaatcgcc tagcaataac gcttcgccta
     4861 aatcaagtaa cggcaatata tcagtaattc caaccataga ttccggcaat aaacgcttta
     4921 caacactttg atcttgacca tttgttaatc gtaaaaccaa gaaattatta cattgactca
     4981 aaattgttcg gcttacatct gaaggacgtt ggctaacgac caacaaagac acgccatatt
     5041 ttctaccttc tttcgcaatc cgctcaaagg cttccaatgc gcgtttttcc gctgcttccg
     5101 ctgaatctcg aacagggaga tataaatgtg cttcatcgca aataatcgtt agtggatggc
     5161 gggaatcttt atccatccaa aattgaatgt tgtataaaag gcgggcaaga actcccgtaa
     5221 caatcggtaa aacatccgac gggacttccg aaaaatcaat aatttttatc cctttttcgc
     5281 tctcagaagc agaaaacagt tttgacaaca tattttccag ccacccatag ctgttgcact
     5341 ctactggcgg ttggaacata aaaccgcaac gtctgtcatc tattttggct ttcatccttc
     5401 ccataaacct agacaactta ctataccaag gaccttgctt tgttcctgaa cctccctctt
     5461 taggtaccat ctcagaatta tctttatcta aacgagctaa caataattca atagaatacg
     5521 gaattggcga atcaacagta aacgtttcca aaacatcatt tctttcttcc ttattcaatg
     5581 tttgctcttt taatgcgcga acatgctcag taaaacgcgc cgcctgattc ggagcattat
     5641 catcactgcg atctaaaatt aaagccagca tttattcccg attgagcagc caatagggaa
     5701 taaataaact gcgttcatct gaaccatcca aatctcccgg tccagcaata cggtattgct
     5761 gagcgatagc gtttttacct tcgcatagag tgctatattc accgtgcata tcgaatacaa
     5821 taagattagc agcttttaaa gctgctgcac gttccaatat taatgcaact gaccagcttt
     5881 taccggaacc agtactaccc aaaatagcag cgtgccgttg aaagaattta tctccgtttg
     5941 ctatagctac agccgtttca tcagccataa aatgacctaa agtcagccgt tcattttctt
     6001 ttacgttagc ggacaaaaga ttcataaata attgcagatt gctgccacta atatgaaagc
     6061 aatctctatc aatttgcgga aaacaatccg ctccccgctt aaaagtgttg ctcaaactac
     6121 catcaacagc tttataagta ccgattaata ctgccttgat aaagtcatcc tgactttcac
     6181 ccagaggaat ttcaccctca ttagatattt cttctagcag caatttttca ctgatagaac
     6241 gcgttacccg ttcgataatg ccgataaggt actcactagc cgttctgcct tgaatcgcaa
     6301 tcagattacc cacagcaata ctagtcattt gttgatgctc ttcaacagaa atcaatacac
     6361 ggctggtatc tactgttaca accctgccca aacgggcatt gtctttaaaa ttcaatgttt
     6421 catttgccat tctctaaaat ctcttttaca aaaaactcaa cgtcccacca atgaacatta
     6481 ggaataaaag tttcttcttg cttgctaacc acccttgttc cagccttatc tccatcaaaa
     6541 atcagagcct tacaattcgg agcttccttc accacgtttc tggcattttc tgaaagtcct
     6601 cttgtcagaa gtagtgtttt cacaccactt ttaattttgc ctgtcaaatg tgtttgaagg
     6661 tggtcatcat taaaaccata gccgatacat aaaattgaag aagcagaatc aatagcttca
     6721 tttgcttttt ctcgatgagc atcaaatggt tgtccatagc cttttttata cttcccaaca
     6781 ccaggcgtaa taattaaagg ctcttccact ttacctatac aacttgtcat tggaacgtct
     6841 ccagccataa accaatctaa actaccatgc ggtttaaaga ttttgatatg atctc
//
LOCUS       DANMBQ010000122         6831 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.123, whole genome shotgun sequence.
ACCESSION   DANMBQ010000122 DANMBQ010000000
VERSION     DANMBQ010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6831
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.123"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..2572
                     /gene="topA"
                     /locus_tag="PXE92_002139"
     CDS             <1..2572
                     /gene="topA"
                     /locus_tag="PXE92_002139"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDL5761346.1"
                     /translation="KAKKINQYLGSNYVVKSSVGHIRDLPKSGSDEKTEKAKPISTKG
                     LTAAEKAKIKAEKERVALVKRMGIDPYNGWKANYQILPDKEKVVSELKSLAKKADHIY
                     LATDLDREGEAIAWHLREIIGGDDSRFSRVVFNEITKDAIKKAFDDPQPLNIDRVNSQ
                     QTRRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFQSEEFWTIL
                     ANTQINRKKLPLELTTYKGKKFSASNEAEANVAVRALEQSDFIVSNIEAKETSSRAAA
                     PFITSSLQRAASTRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLSREALAMARGYIQ
                     DNFGANYLPEKANVYRSKDNAQEAHEAIRPSDVNVKMADLKGMDKDAERLYDLIWRRF
                     LACQMLPARYDSTAVTVSAGDYELKANGRVLRFDGWTKVLPVQGKNPEDQELPAVELH
                     QKLTLDEIVPSQHFTKPPARFNEASLVAELEERKIGRPSTYASIISTIQERGYVRTEN
                     KRFYVEKIGEVVTDRLNESFKDLMNYDFTANMEEVLDQIAEGSKNWKEELNTFFKHFS
                     EELSQAELDELEGGMKPNSLVPTDIDCPTCGRKMAIRTASTGVFLGCTGYALPPKERC
                     KTTMNLIPEAEFFNVLDSDSETKALMARKRCPKCDSAMDSYVIDAERKLHVCGNNPNC
                     DGHIIEQGSFKIKGYDGPVVECDKCGSDMHLKLGRFGKYMGCTSCDNTRKILKNGEVA
                     PPKEDPIAFPELKCEKADAYFVLRDGASGVFMSAHNFPKVRESRAPKVVELAQYRERL
                     PEKLQYLADAPQQDPEGNEAIIRFSRKEKRQYVTSEKNGKATKWIVDYLDGKWVERKK
                     "
     gene            complement(2622..3560)
                     /gene="yvcK"
                     /locus_tag="PXE92_002140"
     CDS             complement(2622..3560)
                     /gene="yvcK"
                     /locus_tag="PXE92_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HDL5761347.1"
                     /translation="MENTDIIPFKPTRHHYLNQLNAVVALGGGHGLGRLLSALSFLKE
                     RLTGIVATTDNGGSTGRIRSQQGVIAWGDLRNCLNQIIVKPTIASRLFEYRFAGTGEL
                     AGHNLGNLILTALENMQIRPLEGINLVRELLHVRSQLIPMSEIPVHLIAQLHSGESVF
                     GEVQIDSLAETPQHLALDTMVVATPEAISAIQSAELILLGPGSFFTSIMPNLLVAGIA
                     NSIAQSKARVVFIDNIGQEHGPAGQLSLNQRIEWMENCIGQARINAVITTDDAGSELP
                     EHIQILRKNLSANDVYYRHDRNKLSKAIDELLAQNI"
     gene            complement(3574..4650)
                     /locus_tag="PXE92_002141"
     CDS             complement(3574..4650)
                     /locus_tag="PXE92_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL5761348.1"
                     /translation="MFQMLQDWYRKKFTDPQIVVLFSILLIGFGIIYFFSDLLMPLLV
                     ALVFAYLLEWPIRFLSSKLKLPRTLSVILVLGGFIALLSFLGVVLLPSLWNQAVTFIQ
                     DLPSMFNLLNAWLQALPEHYPELVDYATLDSIVNTAKSNILSMGESLLTLSINSIISL
                     VGLGIYTFLVPLMVFFLLKDKIVLMRSFSKVLPQNRRLATRVWFEMQQQIANYIRGKF
                     LEILIVGVVTYIIFLFFDLRYPLLLSVAVGISVLVPYIGAVLVSIPVMLIALFQFGLS
                     PDFYYLMLAFIISQLLDGNLLVPFLFSEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIP
                     LATLVKAVLQALPSAQSDAIILEK"
     gene            complement(4681..5436)
                     /locus_tag="PXE92_002142"
     CDS             complement(4681..5436)
                     /locus_tag="PXE92_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5761349.1"
                     /translation="MKKEEVGHHFLARLGKTRLRPGGKLATDWLIANGDFDKNKKVLE
                     VACNMGTTAIQLAQQFECQIVGIDLDEDALEKARKNIKENHVEHLIQVQRANATKLPF
                     DDESFDIVINEAMLTMLPLEAKEKAIREYFRVLKPNGFLLTHDIVIQDKDSDTLLAEL
                     RDAINITVSPLAKADWKSLFQRCGFRNVDTFSGEMSLLSPKGLIHDEGVLGAMKIIGN
                     ALKPENRETFNKMYKLFNDPDKKLGFIAVCSQK"
     gene            5588..5797
                     /locus_tag="PXE92_002143"
     CDS             5588..5797
                     /locus_tag="PXE92_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome alternative rescue factor ArfA"
                     /protein_id="HDL5761350.1"
                     /translation="MSKQKNDYLHQRGQIKESAVKALVTDPLFRQRVERNRKGKGSYR
                     RQEKHKKTIYGQKETPFKNIRLESF"
     gene            complement(5846..6568)
                     /gene="bioD"
                     /locus_tag="PXE92_002144"
     CDS             complement(5846..6568)
                     /gene="bioD"
                     /locus_tag="PXE92_002144"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDL5761351.1"
                     /translation="MPSLFITGTDTNVGKTVVTRAIIQTLTKHSFPVIGYKPIACGGD
                     DSLPTEPTQYDYATEDNSDVLTILDSCPTNVSYRDINSYTFIHSSTPVFAALDAVHHI
                     QLEKLNTDLKRLENAYPNVVVEGTYGWLTPINKDYYFADWVMQNNMPVVLVVGIKEGC
                     VNHALLTANEILQRGVKLVSWVANRVNPGLRHYHELIELLTQKINAPLLGQIPYMGHP
                     EHKELSSYIQNPEPLLAYFSKP"
BASE COUNT         2158 a         1262 c         1441 g         1970 t
ORIGIN      
        1 taaggcaaaa aaaattaacc aatatcttgg tagtaattat gtggtgaaat cgagtgtggg
       61 gcatattcgt gatttaccga aaagtggtag tgatgaaaaa acggaaaaag cgaaaccgat
      121 ttcaaccaaa gggctgaccg ctgccgaaaa agctaaaatc aaagcagaaa aagagcgtgt
      181 tgcattggtt aaacgtatgg gtatcgaccc ctataatggc tggaaagcta actatcagat
      241 tttgccggat aaagagaaag tggtttccga gctaaaatcg ttggcaaaga aagcagatca
      301 tatctatctg gcaaccgact tggatagaga aggggaggcg attgcgtggc atttgcgtga
      361 aatcattggt ggtgatgaca gccgttttag ccgagtggta tttaatgaaa tcaccaaaga
      421 tgcgatcaaa aaggcttttg acgatccgca accgctcaat attgaccgtg taaattccca
      481 gcaaacccgc cgctttttag accgtgtagt gggctttatg gtgtcgccat tattatggaa
      541 aaaagtagct cgtggtttat cggcagggcg tgtgcaatcg gttgccgtaa aattactggt
      601 tgagcgtgag cgtgaaatca aggcgttcca aagcgaggag ttttggacta ttcttgccaa
      661 tacgcaaatt aatcgtaaaa aattaccgct tgaattaact acttataaag gtaaaaaatt
      721 ctcggcaagc aatgaggctg aagcaaatgt tgcagtgcgt gctttggagc agagcgattt
      781 tattgtttct aatattgaag ccaaagaaac cagctctcga gctgctgcac catttattac
      841 ctcatcgtta caacgtgccg ctagcactcg tttaggtttt ggggttaaaa agacgatgat
      901 gttagcccaa cggttatatg aagcgggtta catcacctat atgcgtactg attcaaccaa
      961 ccttagccgt gaagcattag caatggctcg aggttatatt caggataatt tcggggcgaa
     1021 ttatttgccg gaaaaagcaa atgtgtatcg cagtaaagat aatgcccaag aagctcacga
     1081 agccattcgc ccgtcggatg tgaatgtcaa aatggcggat ttaaaaggaa tggataaaga
     1141 tgccgagcgt ttatacgatt taatttggcg tcgtttcttg gcgtgtcaaa tgttgcctgc
     1201 tcgttatgat tctaccgcag tcacagtgtc tgccggagac tatgaactca aagcaaacgg
     1261 gcgtgtactg cgttttgacg gctggacgaa agtactgccg gtgcaaggca aaaatccgga
     1321 agatcaggaa ttaccggcgg ttgaactgca tcaaaaatta acgcttgatg aaattgtgcc
     1381 aagtcagcat tttactaaac cgcctgcacg ttttaatgag gcgtctttgg ttgctgagtt
     1441 agaagagcga aaaattggcc gcccttcaac ctatgcttca attatttcga cgattcaaga
     1501 acgtggctat gttcgcaccg aaaacaagcg tttttatgtg gaaaaaatcg gtgaagtagt
     1561 gacggatcgc ctcaacgaat cattcaaaga tttaatgaat tatgatttca ctgccaatat
     1621 ggaagaggtg ctcgaccaaa ttgcagaggg gtctaaaaat tggaaagaag agttgaatac
     1681 tttctttaaa catttctctg aagagttgag ccaagcagaa ttagatgaac ttgaaggcgg
     1741 aatgaaacca aacagccttg tgccaaccga tattgattgc ccgacttgtg gacgaaaaat
     1801 ggcaattcgc accgcttcca caggggtatt tttaggttgc accggctatg ctttaccgcc
     1861 aaaagagcgt tgcaaaacga caatgaattt aattccagag gcggaatttt tcaatgtgtt
     1921 agattcggat tctgaaacca aagccctaat ggctcgcaag cgttgcccga aatgcgattc
     1981 ggcaatggat agttatgtga ttgatgctga acgtaaatta cacgtttgtg gtaataatcc
     2041 aaattgtgat ggtcatatta ttgagcaagg ttccttcaaa attaaaggct atgacggacc
     2101 tgtagtggaa tgcgataaat gcggttcaga tatgcactta aaactgggtc gtttcggcaa
     2161 atatatgggc tgcacaagct gcgataacac ccgtaaaatt ctgaaaaacg gggaagttgc
     2221 tccgccaaaa gaagatccta ttgcttttcc tgaattaaaa tgtgaaaaag ccgatgccta
     2281 ttttgtatta agagacggag caagtggggt gtttatgtca gctcataact tcccgaaagt
     2341 gcgtgaaagc cgtgcaccaa aagtggtaga gttagctcaa tatcgtgaac gtttgccgga
     2401 gaaattgcag tatcttgccg atgctccgca gcaagatccg gaaggaaacg aggcaattat
     2461 ccgttttagt cgtaaagaga aacgccaata tgtgacttct gagaaaaacg gcaaagccac
     2521 caaatggatt gttgattatc tagacggtaa atgggttgag cgtaagaaat aaagcttaaa
     2581 agacaagcgg taaaattttc taaaaatttt accgcttgct tttagatgtt ctgagcgagt
     2641 agttcatcaa ttgctttact taatttattg cgatcgtgtc ggtaataaac gtcattcgca
     2701 gataagtttt ttcgcaagat ttgaatatgt tcgggaagtt cagaaccggc atcatcagtc
     2761 gtaattaccg cattaattct agcctgtccg atacagttct ccatccattc aattcgctga
     2821 ttaagtgata gttgcccagc tgggccatgt tcttgtccga tattgtcaat aaatactact
     2881 cgggctttgc tttgagcaat agagtttgct atgcctgcca ccagcaaatt cggcataata
     2941 ctggtaaaaa agctacctgg gcctagcagt attaactcag cactttgaat agctgaaatg
     3001 gcttctggtg tagcaacaac catagtatct aacgctaaat gttgtggtgt ttctgctaaa
     3061 gaatcaattt gcacttcacc aaatactgat tcgcctgaat gcaactgtgc aattaaatgc
     3121 accggtattt cagacattgg gataagttgc gatcttacgt gcaataattc tcgcaccaaa
     3181 ttaatccctt ctagcggtcg gatttgcata ttttcaaggg cggtgagaat taaattgcct
     3241 agattatgtc cagcgagttc gcctgtgcca gcaaaacgat actcaaacaa ccgagaagct
     3301 atcgttggtt taacgataat ttgatttaaa cagttgcgta aatctcccca agcaatcacc
     3361 ccttgttgtg aacgtattct accggttgag cctccattat cggtagtggc aacaatgccg
     3421 gtaagccgtt cctttaaaaa agagagcgcg gagagcaatc gacctaagcc gtggccccca
     3481 cctagtgcaa caactgcatt gagttggttt aaatagtgat gtcgggtagg tttaaaagga
     3541 ataatatctg tattttccat cttgggattt cgtttatttt tctaaaataa tggcatctga
     3601 ctgggctgaa ggcaatgctt gtaatacagc tttaaccaaa gtcgctaaag gaatcgcaaa
     3661 aaacactccc caaaagcccc ataaaccacc aaagatgagt acggcaataa taattgtcag
     3721 agggtgtaga tttactgctt cagaaaataa aaagggtacg agtaaatttc cgtctagcaa
     3781 ctgactaata ataaatgcga gcattaaata gtagaaatcc ggcgataacc cgaactggaa
     3841 tagagcaatt aacattaccg gaatgctgac taaaaccgca ccgatgtagg gaactaacac
     3901 tgaaatccct accgctacag aaagtagtaa cggatagcgt aaatcaaaaa agaggaaaat
     3961 aatataagtg acaaccccaa caattagaat ttctaaaaat ttacctcgaa tatagttggc
     4021 aatttgttgt tgcatttcaa accatactcg tgttgcaagt cgacggtttt gcggtaatac
     4081 tttactaaaa gaacgcatta aaacgatttt atctttcagt aagaaaaaga ccatgagtgg
     4141 gactaagaag gtgtaaatgc ctaagccaac taagctgatg atagagttaa tcgagagtgt
     4201 tagaagtgat tctcccatac tcaaaatatt acttttagcg gtattcacaa tggaatctag
     4261 ggtcgcataa tctactaatt cagggtaatg ctccggtagg gcttgtaacc aagcattgag
     4321 cagattaaac atcgaaggta aatcttgaat aaaggtaact gcttgattcc aaaggctggg
     4381 tagtagtact acgcctaaaa aagataataa agcgatgaaa cctcctagta ctagaatgac
     4441 actcaaagtt cgaggtaatt tgagtttgct cgacaaaaaa cggattggcc attccaataa
     4501 ataggcaaac acaagtgcaa ccagaagggg cataagcaga tcgctaaaaa aatagataat
     4561 accgaaaccg atcaatagaa tactaaacag cacaactatt tgcgggtcgg taaatttttt
     4621 tcgataccaa tcttgcaaca tttgaaacat atggattgcc tttaaattat gcgatgaaaa
     4681 ttatttctgg ctacagactg caatgaaccc tagctttttg tccgggtcat taaatagttt
     4741 gtacatttta ttaaaggttt cgcgattttc tggttttaat gcattgccga taattttcat
     4801 ggcgcctaaa acaccttcat catgaatcag acctttaggg gaaagtagag acatttctcc
     4861 ggaaaaggta tcaacattac ggaaaccaca acgttggaat aatgatttcc agtctgcttt
     4921 agcaagtgga gagacagtga tattgattgc atcacgcaac tcggctaata aagtatcgga
     4981 gtctttatct tggataacaa tatcgtgcgt taataaaaag ccatttggtt ttaatacacg
     5041 aaaatattca cgtattgcct tttctttcgc ttctagagga agcattgtca gcatggcttc
     5101 attaattaca atatcaaaac tttcgtcgtc aaatggcagt tttgttgcgt tggcgcgctg
     5161 tacttgaatt aaatgctcaa catggttttc tttgatattt ttacgtgctt tttcaagcgc
     5221 atcttcgtct aaatcaatac caacaatttg gcattcaaat tgttgagcta attggattgc
     5281 agtagtcccc atgttacagg caacttcgag cactttttta tttttatcaa aatccccgtt
     5341 tgcaattaac caatcagttg ctaatttccc cccggggcgt aaacgagttt tgcctaaacg
     5401 agctaaaaaa tgatgaccaa cttcttcttt tttcataaaa acctctggat ttgcaaaata
     5461 cgttaaatat atgaccgctt gtattgtgat ctatgttcgt tattatactc aattttttca
     5521 ttttcttata tacaacatca acagattttg ccagaataca acctcatttt gatatgagga
     5581 aaatagaatg agtaagcaaa agaatgatta cctccaccag cgaggtcaaa ttaaagaaag
     5641 tgcagtaaaa gcattagtga ctgatccact ttttagacaa cgtgtagaaa gaaatcgtaa
     5701 agggaaaggg agctatcgca gacaagaaaa acacaaaaaa actatctatg ggcaaaaaga
     5761 aaccccattt aaaaatattc ggttagagtc tttttaaatg gggttttatt tgtagcttat
     5821 tgtagtttta taagcctgat aaacactatg gtttactgaa ataggccaac aacggttctg
     5881 gattttgaat ataagaagaa agttctttat gctctgggtg acccatatag ggaatttgcc
     5941 caagtaaagg cgcattaatt ttttgtgtca gtagttcaat taattcgtga taatgccgta
     6001 gccctggatt tactctgttt gcgacccaac ttactaattt tacaccacgc tgcaaaattt
     6061 cattcgcagt aagtagtgca tggttaacac aaccttcctt aattcccacc actaaaacaa
     6121 ccggcatatt gttttgcatt acccaatcag caaaatagta atccttgtta ataggagtta
     6181 gccagccata ggttccttct acgacaacat ttggataggc attttctagt cgttttaaat
     6241 ctgtgtttaa tttttccagt tgaatatgat gaactgcatc taaagctgca aatacagggg
     6301 tactggaatg aataaaagta tagctattaa tatcacgata gctaacatta gttggacagc
     6361 tatctagtat ggttaatacg tctgaattat cttcagtagc ataatcatat tgagtaggtt
     6421 ctgtgggtaa tgaatcatca ccgccacaag caatgggttt atagccaatt acaggaaaac
     6481 tatgttttgt aagtgtctgt atgatggctc gggtaaccac agttttccct acgttggtgt
     6541 ctgttccggt aataaataat gagggcataa atggctcctt tcgaaaatat ggctggtagt
     6601 ttaaccaaaa atagatcaat ttattctgtc tttgatcaaa tttccgtcat aaattccttg
     6661 ttttattgct gaacaggcaa ttaatggact attccaatcg tattggctgg taactaaatc
     6721 gatttttagg tttgtttgta acaaattttt atgcaatttt tctgaaattt gcgtaaataa
     6781 cggctctttt attttgatca atggcgagtt tagcataatt ttttcactag a
//
LOCUS       DANMBQ010000123         6801 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.124, whole genome shotgun sequence.
ACCESSION   DANMBQ010000123 DANMBQ010000000
VERSION     DANMBQ010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6801)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6801)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6801
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.124"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(262..522)
                     /locus_tag="PXE92_002145"
     CDS             complement(262..522)
                     /locus_tag="PXE92_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761352.1"
                     /translation="MTFELGRVCATRAVAECFNQHTLVDLLHRYCSGDWGNLCDNDKK
                     ANVKAIERGGRILARYDVEDETLYVITEADRSYTTILFPYEY"
     gene            complement(635..997)
                     /locus_tag="PXE92_002146"
     CDS             complement(635..997)
                     /locus_tag="PXE92_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761353.1"
                     /translation="MIDTFFDLDDTSCYLGNWEDILKEYDDCLSVEDFWHSAKEFDTV
                     PHFGNLYQERVILKLIARFCIELNIEQDSGLVEFDYYINAIDTHFYINSQRICDIDDW
                     NEMLDKIREEMTPAKLVA"
     gene            complement(1088..1438)
                     /locus_tag="PXE92_002147"
     CDS             complement(1088..1438)
                     /locus_tag="PXE92_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761354.1"
                     /translation="MTTINLSQQERELVEFVWNNRNTPWFFHCSVSNVSRNNTSRQIA
                     VCVIKDNQLISLDELIAKLCGYKLRQNGLYVTVHNMDAVFDTLYRFMCKLNDEMEANE
                     NVCPYLSLAHYEVF"
     gene            complement(1536..1943)
                     /locus_tag="PXE92_002148"
     CDS             complement(1536..1943)
                     /locus_tag="PXE92_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL5761355.1"
                     /translation="MNRQGIYINGKQVFDSQGEDIQSIGFFGCNIQTVVGINKGSILV
                     SSNSNQLLVNGQSIELGSEPVLKIEVLGNVQKLSAGAADVSITGDAGSVDTVSGDVSI
                     KGNVASYVKTVSGDVRCRAITGSVETVSGDIYR"
     gene            complement(1967..2614)
                     /locus_tag="PXE92_002149"
     CDS             complement(1967..2614)
                     /locus_tag="PXE92_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3560 domain-containing protein"
                     /protein_id="HDL5761356.1"
                     /translation="MTINTYAKFAPTVFVAKCSESHTKGEIITLTSKYGNETEVQVHN
                     LVKQDGEHYFYSFTRCDGMDSQSFAQQKAERYQGYADNAAKRSQDWVNAANEGCDFLS
                     LGEPIKIGHHSEKRHRNLIERNARRMDNAVAEMNKAASYESRIAYWEKMAGKIDLSMP
                     ESLEYFKFELDKAKTKHKELKDNPEKREHGYSLTYAKKAVNELEKKVKLAELLWA"
     gene            complement(2689..3677)
                     /locus_tag="PXE92_002150"
                     /pseudo
     CDS             complement(2689..3677)
                     /locus_tag="PXE92_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252470.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
     gene            3843..4946
                     /gene="proB"
                     /locus_tag="PXE92_002151"
     CDS             3843..4946
                     /gene="proB"
                     /locus_tag="PXE92_002151"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL5761357.1"
                     /translation="MKIDKTLVVKFGTSTLTQGSAKLNLPHMIDIVRQLAQLHQAGFR
                     LVIVTSGAIAAGRHYLNHPQLPPTIASKQLLAAVGQSQLIQTWEKLFAIYDIHIGQIL
                     LTRADIEDRERFLNARDTLRALLDNQIIPVINENDAVATSEIKVGDNDNLSALVAILV
                     QAEQLYLLTDQQGLFDRDPRKHPDAKLIADVDKITDHIRAIAGGSGTSLGTGGMSTKI
                     SAADVATRSGIETIIAPGNRPNVIVDLAYGQAIGTKFSVQADRLESRKQWLYAAPSAG
                     IITIDAGAENAMLIQHKSLLPAGIVNVEGRFSRGEVVKIRTQQGKDVALGMPRYNSDA
                     LHLIQGKHSQDIEQVLGYEYGAVAVHRDDMIVL"
     gene            4970..5293
                     /locus_tag="PXE92_002152"
     CDS             4970..5293
                     /locus_tag="PXE92_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761358.1"
                     /translation="MNWKAVLIFSVLGSLVSCASYSEHAVQRIEAGKSFAVTGNTKRI
                     NTMACQDNDDWYLDGYRVGKSFREHQQKMLIQRTAYCEEQTGKAVPDKFRHSWNSGYQ
                     QGLKR"
     gene            complement(5353..5907)
                     /locus_tag="PXE92_002153"
     CDS             complement(5353..5907)
                     /locus_tag="PXE92_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5761359.1"
                     /translation="MSQQFFDQVSLESQLEVSAEAVAKGIFDVLNQNPPALELNEVSH
                     ALQTLQQQAKFKEIEAVGAQFLAENAQKAGVNTTESGLQYEVLVAGEGQIPAREDKVR
                     VHYTGTLIDGTVFDSSVKRGQPAEFPVNGVIAGWIEALSMMPVGSKWRLTIPHNLAYG
                     ERGAGASIPPFSTLVFEVELLAIL"
     gene            complement(5932..6750)
                     /gene="psd"
                     /locus_tag="PXE92_002154"
     CDS             complement(5932..6750)
                     /gene="psd"
                     /locus_tag="PXE92_002154"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251575.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL5761360.1"
                     /translation="MPQLYLTRLAGWFAKQQWGAVTHFVIKLFAKKYHVDMSEAAKPN
                     FSDYASFNEFFIRPLADNARPINQNPTALCLPADGRISQLGHIEQDLLLQAKGHYFSL
                     NDLLAGDEALAHHFKDGEFATTYLSPRDYHRVHMPCDATLCKMIYVPGDLFSVNPFLA
                     EHVPNLFARNERVICVFDTEFGKMVQILVGATITASMSTVWAGVINPPRPEKITTWAY
                     EGESAVKLLKGQEMGAFQLGSTVINLFEKDRVQLASHLQVDSPVRMGEILAHQK"
BASE COUNT         2026 a         1399 c         1381 g         1995 t
ORIGIN      
        1 gtttgtaaat ttcatattca aagataatgt ctttagctgc ataataaagt gcagccgtct
       61 cctcattgcc gaataatgtt tttcttctgt tatatatttg tttttccatg cttaattcat
      121 ttgtaattgt tctacaaaga ggaaaaataa ttaaaattgc atattgaaac aactataaaa
      181 tcgaaagata taaaatagaa aaacgccatc atttgacggc gtttgataac ataaaaatgt
      241 agggtataaa tggaagctcc attaatattc ataaggaaat aaaattgtag tgtaactacg
      301 atcagcctct gtgattacat aaagtgtttc atcttccaca tcatagcgag ctaaaatgcg
      361 tcctccgcgt tcaatagctt tcacattggc tttcttgtcg ttatcacaca aatttcccca
      421 atcaccactg cagtagcgat gaagtagatc aactaatgta tgttgattga aacattcagc
      481 aactgcacga gttgcacata ctctaccaag ctcaaaagtc atacatttct cctaaacaga
      541 aagaggggaa atgtcatccc attggggaga tatttcccca agtgggtgaa ttaagacgac
      601 agtaagcgtc atttttagta aaaatttgca aaaattaggc aactaattta gccggcgtca
      661 tttcttcacg aatcttatct aacatttcat tccaatcatc tatatcacag attctttggc
      721 tattaatata gaaatgcgta tctattgcat tgatataata atcaaattcg actaaacctg
      781 aatcttgctc aatattcagc tcaatacaga atcgagcaat caacttaagg atgacacgct
      841 cctggtatag gttgccaaaa tgaggtacgg tatcaaattc tttagcggaa tgccaaaaat
      901 cttcaactga aagacaatca tcatattctt tcagtatatc ctcccagtta cctaaatagc
      961 atgaggtgtc gtcaaggtca aaaaaggtgt ctatcattat gtttctccaa attcaaaata
     1021 aaagtgggaa acaatctgcc ctatcggaaa aattgtttcc cgacagggtg gatagttctg
     1081 ataccaatca aaacacttca tagtgagcta atgataaata agggcaaaca ttttcatttg
     1141 cctccatctc atcatttagc ttgcacataa agcgatataa ggtatcaaaa acagcatcca
     1201 tattatgaac agtaacgtat aatccgtttt gtctgagttt ataaccacat aattttgcta
     1261 tcaattcatc aaggctaatc aattgattat ccttaatgac acatacagca atttgccgag
     1321 aggtattatt tctcgacaca ttcgatacac tacagtgaaa aaaccaaggt gtattacggt
     1381 tattccagac aaattcaact aactcacgtt cttgttgtga aaggttaata gtggtcatca
     1441 tgtttctcca aattcaaaat aaaaatggga aacaatctgc ccaccttggg aaaattgctt
     1501 cccaataggg tggtaaataa taagatgagt aaatatcagc gataaatatc accggagacg
     1561 gtttccaccg aaccggtaat agcacgacag cgaacatcac cactcacggt tttcacataa
     1621 gaggcaacat ttcccttaat agagacatca ccgctaactg tgtcaacact gccggcatct
     1681 cctgtaatag agacatctgc ggcaccggca ctcagtttct gcacattgcc caaaacctca
     1741 attttgagga ctggctcaga acctaattca atcgactgtc cattcaccaa taattgatta
     1801 ctattggacg agactaaaat acttcctttg tttatgccta cgaccgtttg aatattgcag
     1861 ccaaaaaatc caatgctttg aatatcttcg ccttgtgaat caaacacctg tttgccatta
     1921 atataaatac cttgtcgatt catatcgtca tctcctttgt aaataattat gcccaaagta
     1981 attcagctaa ttttactttt ttctcaagtt cattaactgc ttttttagca taagtcagtg
     2041 aataaccatg ctctcgtttc tcggggttgt ccttcaattc tttgtgcttt gttttggctt
     2101 tatccaattc aaacttaaag tattccagac tttccggcat agacaggtca atttttcctg
     2161 ccattttttc ccaatatgcg atacgagatt cataacttgc agctttgttc atttctgcaa
     2221 ccgcattgtc catacggcga gcattacgtt caataaggtt acggtgtctc ttttcgctgt
     2281 gatgaccaat ttttattggc tcacctaaac tcaaaaaatc acacccctca ttagcggcat
     2341 ttacccaatc ttgactacgt ttggctgcat tatctgcata gccttgatag cgttctgctt
     2401 tttgttgagc aaatgactga ctatccatcc catcacaacg agtaaatgaa taaaaataat
     2461 gctcgccatc ttgtttaaca agattatgta cttgaacctc ggtttcatta ccatatttgc
     2521 tggttagcgt aataatttca cctttggtat gtgattcaga gcattttgca acaaaaacgg
     2581 taggtgcaaa ttttgcataa gtgttaatag tcatagcgtt tctcctataa agtaggggaa
     2641 acgccatcga ggagtttccc cggtgggtaa attgttgaga taagtaaatt attggccttt
     2701 tgatgccata aatgcaatat agcctaaacc attttgcata gggtcttcgt tatatttcag
     2761 tgcatacaga attttcaaaa tccgctcact ttcttgaatc cccattctgg caacttcatc
     2821 cgtttcttca ctttgatacc aagctgcata acgttgatct agccgtagaa attcatcttg
     2881 aatgaattta tttagcatac agatttcctc taagaataaa ctcagcgcaa atacaatgcc
     2941 taagcatgcc ccaaatgtga ggattgtcgc gagtgcccaa cgggcaatcc ccatattgat
     3001 atgccctttt aaaatatcgg cgagtgcatt aatcagtgga aagccgggaa cgagcaataa
     3061 tacgctggat gccaaggcaa tttggggctg attgccgatg ttatatttca acgcgatacc
     3121 cgcaattagt gaggcgacaa aggcggtcac cgcaaataca attaaggggt tatagtgtct
     3181 tgcggcaagt gattggcgaa catacatggc gagtgttgcg gcgagaaatg taaccaatga
     3241 aactagtgcg tccccaccag ataaatgagc aaaactggca caggatacgc caatcatcaa
     3301 catcacaaaa tagcgattgt atttaagcgg tttaatgcga gccagtttgg catgcacttg
     3361 ttgcatatca tagattttac gttctgctgt aatcacaata cgttgcactt cggtaaccac
     3421 ttgcatatta attcctttgt cttggttttt acggactgtc gtgatgcaat ggtcttgggc
     3481 taatgtagta agaataatgg catttggcgt gagggcacat tctacgctat ctacaccgag
     3541 ggctaagcct aagcgatgtg ccatttgcac aacgatggca ctttctgcac catgttgtat
     3601 aagagttggg caacttgaac acaaaggcga gtgatttctc gttgccgctc cgtttcttgt
     3661 gaagaggttg aggtcataat cgggttccta gctgaaaaat caagaagctt tattatatgc
     3721 cttttagtga gaaaaaattt gtgctaaatc atagaaaata gcaagtaaac gagatgattt
     3781 ttctgatgat taatggtaag ttagcttcaa ttttgtgcga caaaaataag aagatagaga
     3841 agatgaaaat cgacaaaaca ctcgttgtaa aatttggaac cagtacgctt acgcaaggat
     3901 cggcgaagtt aaatttacct catatgatag atattgtgcg tcagctcgca cagcttcatc
     3961 aagcgggctt tcgtttagtg attgttacct caggggcgat tgcggcaggt cgtcattatt
     4021 taaatcaccc gcaattgcca ccgacgattg cctcgaaaca attattggct gcggtaggac
     4081 aaagtcagct cattcaaacg tgggaaaaat tgtttgccat ttatgatatt catattgggc
     4141 agattttatt gacccgtgcc gacattgaag atcgtgaacg ttttttaaat gccagagata
     4201 ctttgcgcgc cttattagac aatcagatta ttccagtgat taatgaaaat gacgctgtcg
     4261 ctacgtcaga aattaaagta ggcgataacg ataatttatc cgcgttagtg gcaattttgg
     4321 tgcaagcaga acagttgtat ttgcttactg atcagcaagg tttatttgat cgtgatccgc
     4381 gcaaacatcc agacgccaaa ttgatcgccg acgtggacaa aattaccgat catattcgcg
     4441 cgattgcggg cggaagtggc acctcgttag gcacaggtgg catgtccacc aaaatcagtg
     4501 ccgcggatgt ggcaacccgc tccggcattg aaaccattat tgcaccgggt aatcgcccga
     4561 atgtgattgt ggacttagct tatgggcaag ccattggcac caaatttagt gtgcaagcag
     4621 atcgcttaga aagtcgtaaa caatggctat atgcggcgcc gtcagccggt attattacca
     4681 ttgatgcggg ggcggaaaac gcgatgttaa tacaacataa atcgttattg cctgctggga
     4741 ttgtaaacgt ggaagggcgc ttttcacgcg gtgaagtggt aaaaattcgt actcagcaag
     4801 gcaaggatgt tgccttaggg atgccacgtt ataacagcga tgcgctccat ttaattcaag
     4861 gcaaacattc gcaagatatc gaacaggttc tcggttatga atatggggcg gttgcggtac
     4921 accgagacga tatgattgtg ttataaatca gaaaaagaaa ggtaacaaga tgaattggaa
     4981 agcagtattg atattcagtg tactaggttc gctggtgagc tgtgcttcat actctgaaca
     5041 tgcggtgcaa cgtattgagg caggcaaatc ttttgcagtg acggggaata caaaacggat
     5101 taataccatg gcatgtcaag ataatgatga ttggtatttg gacggctatc gtgtgggaaa
     5161 atcatttcga gaacaccaac aaaaaatgtt gattcaacga acggcttact gtgaagaaca
     5221 aacgggcaag gctgtgccgg acaagttccg ccattcgtgg aacagcggct atcagcaagg
     5281 cttgaaacga taaacgctag acataaaaaa gtgcggaaaa tgaccgcact tttttatgtc
     5341 tagcgtttag ctttaaagaa tggctaataa ttcgacttca aacactaagg tactgaatgg
     5401 cggaatggag gcaccagcac cacgttcgcc ataagcgagg ttgtgaggaa tggttaaacg
     5461 ccattttgaa cccactggca tcatggacaa ggcttcaatc caaccagcga tcacgccatt
     5521 tactgggaat tctgcaggtt gaccacgttt tactgagctg tcaaagacgg taccgtcgat
     5581 taatgtccca gtgtaatgca cacgcacttt gtcttcgcgt gccggaattt gcccttcacc
     5641 agccactaac acttcatact gtaaaccaga ttccgtagta tttacccccg ctttttgcgc
     5701 gttttcagct aagaattgtg caccaacggc ttcaatttct ttgaatttcg cttgttgttg
     5761 caaagtctgt agggcatgac tcacttcatt taactcaagt gctggtggat tttgatttaa
     5821 cacatcaaag atccctttcg cgacggcttc ggcgctcact tcaagttggc tttctaatga
     5881 cacttggtcg aaaaattgtt gactcattgt ttttcctatt gtggttaaaa attatttttg
     5941 gtgggcaaga atttcaccca tacgtaccgg gctatccact tgtaaatgag atgccagttg
     6001 cacacgatct ttttcaaata aattgatcac cgtcgagccc aattgaaagg ctcccatttc
     6061 ttgtcctttc agtaatttga ccgcactttc tccttcatag gcccaggtgg tgattttttc
     6121 tggacgaggc gggttgatca cacctgccca cacggtgctc atactcgcgg taatggttgc
     6181 gccgactaaa atttggacca ttttaccaaa ttcggtatcg aatacgcaga tcacgcgttc
     6241 attacgtgca aataagtttg gcacgtgttc ggctaaaaat ggattgactg agaataagtc
     6301 acctggcaca taaatcattt tgcataaggt ggcatcacaa ggcatatgca cacggtggta
     6361 atcgcgtggt gagaggtagg tggtggcaaa ttcgccatct ttaaaatgat gagcgagcgc
     6421 ctcgtcgcca gctaacaaat cgttcaagct gaaataatgt cctttggctt gtagcaataa
     6481 atcctgctca atgtgtccta actgactaat acgaccatct gccggtaaac aaagtgcggt
     6541 aggattttga ttaattggac gggcattgtc cgctaatgga cggataaaaa attcattaaa
     6601 gctcgcatag tcgctgaaat ttggttttgc agcttcactc atatccacat ggtatttttt
     6661 cgcgaataat ttaatcacaa aatgtgtgac agcaccccat tgctgttttg caaaccagcc
     6721 tgcaagacgt gttaaataaa gttgtggcat cacatattga aaggcaattt taatccgttg
     6781 ccagtaactc agttgtgctt t
//
LOCUS       DANMBQ010000124         6613 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.125, whole genome shotgun sequence.
ACCESSION   DANMBQ010000124 DANMBQ010000000
VERSION     DANMBQ010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6613
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.125"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(73..1764)
                     /gene="dld"
                     /locus_tag="PXE92_002155"
     CDS             complement(73..1764)
                     /gene="dld"
                     /locus_tag="PXE92_002155"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HDL5761361.1"
                     /translation="MSNNSLISQLTEIVGQSYIITDPTKTEAYRSGYRFGTGSAIAVV
                     KPTTLLEYWNVLKACVAADVIVISQAANTGLTGGSTPSGNDYDRDIVIINTMRMNGIQ
                     LINNANQVVCLPGSTLNELELLLKTHGREPHSVIGSSCIGASVIGGICNNSGGALVQR
                     GPAYTEMALFAQLNEDGTLELKNHLGIDLGDTPEEILENLQAQRYQRKDIQQACGKGH
                     DHAYCNHVRQIDEDSPARFNADPARHYEAAGSAGKLAVFAVRLDTFPLEKDTAVFYIG
                     TNHTDTLNDIRRYMLANFEVLPISGEYIHRDAFDIAADYGKDTFWVIKKLGTHRLPQL
                     FSLKAKVDRMAKKLTFLPANLSDKILQAISKMLPQHLPESLRDYRNQYEHHLIIKMGG
                     KGVQEARDYLARYFADTQKGGYLECNPTESQAAMLHRFAVASAAIRYRAIHDKEVEDI
                     VALDIALRRNDKAWFEVLPPEIESQITHKLYYGHFMCHVFHQDYIVKKGVDCLALEHQ
                     MLELLDKRGAQYPAEHNVGHLYEAKPTLRKFYRQLDPTNSFNPGIGQTSKKKYWK"
     gene            complement(1976..3054)
                     /locus_tag="PXE92_002156"
                     /pseudo
     CDS             complement(1976..3054)
                     /locus_tag="PXE92_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011150324.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
     gene            3384..4100
                     /locus_tag="PXE92_002157"
     CDS             3384..4100
                     /locus_tag="PXE92_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL5761362.1"
                     /translation="MYLMYVDESGSTTDPTQKYFVLSGIAVFERNTHWIEKKMNVIAS
                     QFCQYSEGSDPYFYELHGSPMRSGKSEWRGIPMSERINAIQDCLKLVQSNNIRIFAAV
                     IEQGYSSGQDTITECFEQISSRFDMYLSRLHAQGNTQRGISIFDKSSTEKSIQALART
                     FKNSGHTYGKLRNFSEVPLFLDSKSSRLIQLADLVSYAIFRHYEHNDSSFYDIIRNNF
                     DYHNGRIHGLYLRNKEDIIS"
     gene            complement(4143..5061)
                     /locus_tag="PXE92_002158"
                     /pseudo
     CDS             complement(4143..5061)
                     /locus_tag="PXE92_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700778.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
     gene            complement(5063..>6613)
                     /locus_tag="PXE92_002159"
     CDS             complement(5063..>6613)
                     /locus_tag="PXE92_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase/relaxase domain-containing protein"
                     /protein_id="HDL5761363.1"
                     /translation="VHDIGKVVVDIEITLKDGSRWFAWNGLPPQPYKFKYIKGRDYHL
                     HPVLGGFLANQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQKADQHSVT
                     LALGGDVNKLVQRPVNSLSKQLVLALRYLLEQKIKLNTPKGPADGWFTEEGLWLVSKT
                     AADNIRAYLLGQGISVPKDNPKLFDEMQSLGIVEESPAGGAIWSCRIQADSGWTPANT
                     FTLLRIKPEVAWENINDRPNYFAGKVKIVEQITEESNIETQSTLVDGTTKPAPLPSVQ
                     TGGIIASKEVEISQVETNSDNAPSSEIIINDENDLTSFVLDMFAPTESSEPSLDDISI
                     GKGQEIASMPSKQEVQDKSTTKKLKVTQSAVETPETLTLSELQLQNKENSITGDNFVK
                     WLKSGIATNKFAINKPTAKLHIVEDHLFLVTPVIFEMYLQETGQPYDKETINNLQYDF
                     QGLGIHSPKNTMTNGKPDTINFWKCDVIGPRKTSSLTGYLIKNTRLFFGDKVLLNNHC
                     LTLQKEET"
BASE COUNT         1901 a         1340 c         1243 g         2129 t
ORIGIN      
        1 ttagcaactg ttttgtccac ttggcatagt ttttgacgga tcagcaacta ttttgtctac
       61 tatgcctttt tgttacttcc agtatttttt cttcgaggtt tgcccgatcc ccggattaaa
      121 gctgttggtt ggatcaagct gccggtagaa tttgcgtaag gtcggttttg cttcgtaaag
      181 atgaccgaca ttatgctccg cagggtattg tgccccacgt ttatccagta attctaacat
      241 ctgatgttcc aacgccaaac aatctacacc ttttttcaca atatagtctt gatggaaaac
      301 atggcacata aaatgcccat aataaagttt gtgcgtgatt tgactctcta tttccggcgg
      361 tagcacttca aaccacgctt tatcatttcg gcgaagggca atatctaaag caacaatatc
      421 ttccacctct ttatcgtgaa tggctcgata gcgaatcgct gccgaagcaa cggcaaaacg
      481 atgtaacatt gccgcttggc tttcagtcgg attacactcc aaataaccgc ctttttgtgt
      541 atcagcaaaa taacgggcaa gatagtctct tgcttcttga acgccttttc cacccatttt
      601 gataattaag tgatgttcat actggttacg gtagtctcga agactttccg gcaaatgttg
      661 cggtaacatt tttgagattg cctgtaatat tttatcactg agatttgccg gtaaaaaggt
      721 gagtttcttc gccattctgt ccacttttgc tttaagtgaa aagagttgtg gtaagcggtg
      781 tgtaccgagt tttttaatca cccaaaaagt atctttaccg taatcagcgg caatatcaaa
      841 ggcatcacga tgaatatatt caccggaaat cggcaatacc tcaaagttgg ctaacatata
      901 gcgacgaata tcgtttaatg tgtccgtatg atttgtcccg atataaaaaa cagccgtgtc
      961 tttttcaagc ggaaaggtat ctaatcgcac cgcaaacacc gctaactttc ctgcactacc
     1021 ggcagcctcg tagtggcggg caggatcggc attaaaacgg gcaggggagt cttcatcaat
     1081 ttggcggacg tgattacaat aggcgtgatc gtgtcctttt ccgcacgctt gctgaatatc
     1141 cttacgctga taacgttggg cttgcagatt ttctaaaatt tcttccggcg tatcacctaa
     1201 atcaatacct aaatggtttt ttaattccag cgtgccgtct tcatttaact gggcaaacag
     1261 tgccatttca gtataagccg gcccacgttg cactaatgca ccccctgaat tattacaaat
     1321 accaccgata accgaagccc cgatacagga cgatccgatc accgaatgcg gttcacgtcc
     1381 gtgcgttttc agcaacaatt ccagctcatt taatgtcgag cccggtaagc aaacgacttg
     1441 attggcattg ttaattaact gaatgccgtt cattcgcatt gtgttaatga tcacaatatc
     1501 ccgatcataa tcgttgccgc ttggtgttga accaccggtt aatccggtat tggccgcttg
     1561 tgagataaca atgacatcgg cggcgacaca ggcttttaat acgttccagt attctaataa
     1621 cgttgtaggt tttaccactg caatcgcact acccgtgcca aagcgatacc cgctacgata
     1681 ggcttccgtc ttagtcgggt cagtgatgat ataagactgc ccgacaattt cagtaagctg
     1741 agaaatcagt gaattatttg acattatgct tccctcaaag gtagaaatag atagggcagt
     1801 atagcaataa acaaaagaga gcaaagcaga atgttacaaa attgtgaact actgcacaga
     1861 ataaatgaag aaatgaagta aaagaaagcg agctaaaaga gcgtcgcccg ctttatttgt
     1921 agaaaatcaa acctaatctg acagtccccc gtttaaaatt accgtgtctg tcagattaat
     1981 ttgagcttaa attcttttct gcccaaatgc gttttccatc aactaatgtc tccatcggtg
     2041 ttcttccaca gcacattttt ccttgatggg ttcgatgatg gttataatac attaaccatt
     2101 catctaagtc agcttgcaat gcctctaaat ccatataaat ccgttttctg aatgccactt
     2161 ggtagaactc ctgcaaaatc gttttgtgaa aacgctcaca gatgccgttt gtttgtggct
     2221 gtttcacttt ggtttttgtg tgctctatgt cattgatagc caaataaagc tcataatcgt
     2281 gattctcaac tttcccacaa tactcactgc ctcggtctgt cagcactcgt aacataggta
     2341 acctctggct ttcaaagaat ggtaatactt tgtcatttag catatcagca gcagtgatag
     2401 ccgtcttcat tgtatacagt tttgcaaatg ccactttact ataagtatca ataaacgttt
     2461 gctgataaat acgacccaca cctttaatat tgccgacata aaaggtatct tgtgacccta
     2521 aatagccggg gtgtgccgtt tcaatttcac cacaggcaat ctcatcttct ttcttccgct
     2581 ccaaggcttg tatctgtggc tcactcagaa taatgccttg ctctgccacc aatttttcga
     2641 gggcagttaa gcgttgctta aaattagcta agtgatgtct caaccaaatg gaacgtacac
     2701 cacctgcaga gacaaaaacc acctgcagag acaaaaacca cctgcagaga caaaaatccc
     2761 ctgtttacgc agttcattac tcactcgaac ttgaccaaaa gcaggattat ctaaagcgaa
     2821 ttgtacaacc gctttttctg tggattcatc cacacgattt ttaatgttgg gaacacgtcg
     2881 attttgattt agtaatgcct caacaccgcc ttgttcgaca gcctgttgat agcgataaaa
     2941 agtatctcga ctcatcccca ttaccttaca ggcttgtgag atattaccca gttcttctgc
     3001 taaatttaat aaaccggtct tgtgtttaat aagtggattg ctagaataaa acatgagagt
     3061 ttcctttttg tttagattga tttttgacac tcatattcta aacgggaaac tctcactttt
     3121 tagagtgaat tgtcagatca agtctgatct tctacagacg atccaggtct tacacattct
     3181 ttcaagtttg taaagcctga aaattatttt ttatacttga tttttgtcaa aaagtctcta
     3241 cactatatgg cagggtcagt tttcgctgtt taacggtgtt taatgagatt ttcattactg
     3301 gctctcctta atagaaattt atggaagagc tatctgatag agtaatctag cgatagctct
     3361 ttttcattga acaaagaggc tatatgtatc ttatgtatgt tgatgagtct ggttctacga
     3421 cagatcctac tcaaaaatat tttgtattat caggtatcgc tgtatttgaa cgaaatactc
     3481 attggattga gaaaaaaatg aatgtgatag cctctcaatt ctgtcaatat tctgaaggga
     3541 gtgatccata tttctatgag ttacatggtt caccaatgag atctggaaag agtgaatgga
     3601 gaggcattcc aatgagtgag cgtattaatg ccattcaaga ttgcttgaaa ttagttcaaa
     3661 gtaataatat tcgtatattt gcagcagtta tagagcaagg gtattctagt ggtcaggata
     3721 ctattacaga atgttttgag caaatatcat ctcgatttga tatgtatctg agccgtttac
     3781 atgcccaagg taatacccaa agaggcattt ctatctttga taaatcatcg actgagaagt
     3841 caatccaagc acttgcaaga acattcaaaa atagtgggca tacttatggg aaacttagaa
     3901 atttctcaga agttccatta tttcttgact caaagtcatc gagattaatt cagctagcgg
     3961 atctagtttc ctatgcgata tttagacact atgaacacaa tgatagctca ttttacgata
     4021 ttataagaaa taactttgat tatcataacg ggcgtattca tggtttatat ttacggaaca
     4081 aagaagatat tatttcataa aaattcgccc caaaagggag aagtatctcc cttttgtatt
     4141 ttttataaca aattaaccgt ttctctcaac atttccacat cgtgttcaat atatcctagt
     4201 gtcacactga tatctttatg ccctaacagt ttctgaacca cataaacatt ttcgggcttc
     4261 ttcattaatt gagtagcaac tgtatgtcga aatctgtgtg gtgatgaagt aaaaccgacc
     4321 aagtcagaaa tatgccgaaa tatatgtgta agctgatttt ggctcatcgg ctgtcctctt
     4381 cttcgagagc atcgagaaaa taaattgaga ttgaacaatt ggcaattatc tgtttgtttt
     4441 cttattttta attcagtaat aagcctttct atatgaatat aaagtgaatc tgaaatcggt
     4501 acgatatggt aatcatgatt tttattgatt tccggcgaaa tataaatcgt cctattagaa
     4561 agatctacat cactaatttt cagtttcact aattgtcctc gccgaatccc cgtacatctc
     4621 aatgtcataa taattgcaag gacaaaccag cttggtttta gaaagtcagg taatacaacg
     4681 ttattattga gtatgtggtc tattttatgt aattgttcgg ttgaataagt tttctttctc
     4741 cttttcgatt ctcgaataaa taactgatta aatggatttc gatttatatt aagtaatcct
     4801 tgcgatatac caaagttata taaggctttt aaatgtctga cataattatt ccacgttact
     4861 gctttgattt tatcgccaac aatttgatta cgccattcaa tgagcatatc ggtggtaatg
     4921 tcattggcat ttaactttgg ataacgcttt ttgataattc ggattacgtt gttgtagctc
     4981 cgtttggtat ccggacgaag atagtgacga tagaaaaaaa aatcggtcta gtagcgaatc
     5041 aaaagagata gaagttatca ttttaagttt cctctttctg taaagttaaa cagtgattat
     5101 ttaatagtac cttatcccca aaaaagagac gggtattttt tatcaaatat cctgttaaag
     5161 aggaagtctt tctcggtcca atgacatcac atttccaaaa attgatggta tccggcttac
     5221 cgttggtcat tgtgttttta ggtgaatgaa tccctaatcc ttgaaaatca tactggagat
     5281 tattaattgt ttccttatca taaggctgtc cagtctcttg caaatacatt tcaaaaataa
     5341 cgggggtaac taaaaacagg tggtcttcaa caatatggag cttggcagta ggcttgttaa
     5401 ttgcaaattt gttggtcgca atacctgatt tgagccactt tacaaagtta tctcctgtaa
     5461 ttgagttctc cttattctgt aactgtagct ctgatagtgt taatgtttcg ggcgtttcta
     5521 ctgcactttg tgttactttg agctttttag tggtagattt atcctgtact tcttgtttgg
     5581 atggcatact tgcaatttcc tgtcccttac caattgaaat atcatcaagg cttggttcgg
     5641 aactttccgt aggtgcaaac atatccagca caaaggaggt taaatcattt tcatcattta
     5701 tgatgatttc tgaggatggt gcattatccg agtttgtctc tacctgagat atttcaactt
     5761 ctttagaggc aataatgccc cctgtctgaa cactcggtaa tggagctggt ttagtggtcc
     5821 catcgactaa tgtagactga gtctctatat tactttcttc tgttatctgc tcgactattt
     5881 taacttttcc ggcaaaataa tttggtcgat cattaatatt ctcccaagcc acttctggtt
     5941 taattctcaa taatgtaaag gtatttgctg gcgtccaacc tgaatcagct tgaatacggc
     6001 aactccaaat tgctccacca gccggtgatt cttctacaat accgagagac tgcatttcat
     6061 caaataactt tggattatcc ttaggcactg aaattccctg ccccagtaag taagctcgga
     6121 tattatcagc agcagttttg ctaacaagcc acaatccttc ctcagtgaac caaccgtctg
     6181 ccggaccttt gggtgtattt aactttattt tctgttccag caaataacgt agtgccaaga
     6241 ccagttgctt tgacagagaa ttgacaggac gttgaaccag tttatttaca tcgccaccga
     6301 gtgcgagggt aacactatgc tgatcggctt tctgcacgat ctcagataaa agcccggctt
     6361 tatcgttatg cccagacatt gcatacatca gtgaagaaat gacttctgga tactgtccca
     6421 gccaatcaaa cgcagatttt ggaataagtt gatttgcaag gaagcctcct agcaccggat
     6481 gaagatggta gtctcgacct ttgatgtatt tgaatttata aggttgaggt ggtaacccat
     6541 tccaagcaaa ccaacgtgaa ccgtctttga gtgtaatttc aatatcaacg acaactttgc
     6601 caatatcgtg aac
//
LOCUS       DANMBQ010000125         6562 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.126, whole genome shotgun sequence.
ACCESSION   DANMBQ010000125 DANMBQ010000000
VERSION     DANMBQ010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6562
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.126"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            367..2898
                     /locus_tag="PXE92_002160"
     CDS             367..2898
                     /locus_tag="PXE92_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761364.1"
                     /translation="MQREYEKLGASISSVSRKRTEENRALKDSRHQQAKQLLYFRSLR
                     RELRASGINIKAFAQSETNLTDKIAKANQLIDQQKAKLEKLNAVKARNEKYWATVEKV
                     KNTSERLHNLGQRSMISGAAISAPVVGLGKGVVGMAQTAGKFEQFNAILEVTEGSAEK
                     AKQSFDWVKQFAVDTPSNLDEAMEAFVKLRAYGLDPTNGLLQTLGDTGAAMGKPVMQA
                     VEAIADALTGENERLKEFGIKGSVVKGTNIIEYAYTDKLGKQQVAKVNKNNRKEIEQT
                     LTRIFNEKYAGAMEKQAKTLVGIWAKIEDYWTNFQMQVMESGAFDWIKNKLQWVLDSL
                     DKMAENGELQKWAEDVGAVIQETVQGLWAFGEKIIEVVKWLASLARENKGLIATFVKW
                     SAILGSSLTVLGAFAVVASFALYPVARLALGIGKFTGASTLLNKALFDSNDKFRLFNK
                     SLYSSGTTAAFVKSKFNQLATLPNVLGSSFNKLGGGIKMLIPQLKTKVFWLNMLKGIL
                     GKLWSAIRFIFSPLKLLLGIFSPIGLAITAISVAGVALYRNWEKVRAFFGGFLQGLSK
                     GLAPVLERFKPLGKLFETISNWVKSTFKWLSDLLTPADKTSESLDKASSAGEKFGLAL
                     AGAIDLVTSPVQWLVDQFKWISENMPSWDTIGEGVKKAATAIVPTEHAKQITKTAEMS
                     NNMYDPNYTPPQLEQKWIGGLVGNGKGRGFATGGYTGNGGKYEPAGIVHKGEYVMTKE
                     ATARLGVANLNRLNYGKVAGLTALASSVAFAQPMPAVKIDSRPPLTASQPSPTVAPVS
                     QNIHITINATGGQDPQAIARLVAMELEKQQRQAQARARSSLRDRG"
     gene            2960..3139
                     /locus_tag="PXE92_002161"
     CDS             2960..3139
                     /locus_tag="PXE92_002161"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761365.1"
                     /translation="MMFKEKGYDEFVNECVRKGREEHKAGLGFTLEQSRLHIKKTIEQ
                     KSQELNEFQREVVYG"
     gene            3132..3419
                     /locus_tag="PXE92_002162"
     CDS             3132..3419
                     /locus_tag="PXE92_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5761366.1"
                     /translation="MAKITIKPQALSQFDEIVKSVIEFTGFETSGIRLQSDIFDKIEQ
                     IAFMPLSGRAREDGTRETFVRRYRIVYDYDRQADEVIILAIIHSSRLYPRP"
     gene            3548..4153
                     /locus_tag="PXE92_002163"
     CDS             3548..4153
                     /locus_tag="PXE92_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5761367.1"
                     /translation="MSEPNHAEQIRRLDNIIRLGTIAEVDLTTATARVNSGGITTDFL
                     PWLTFRAGTSQTWSAPTVGEQCVVLSVSGEFTTGVILFGIYTQNAPSQSADEHLFRFS
                     DGAEISYNTASGQLTVKNCKVVIVQATESITLDTPTVKATKNVVIGGNLSVKGTTSSQ
                     GAISTQGAVTAKGDVSGAGISLGSHHHIEQGDGRPTSGAKP"
     gene            4153..4488
                     /locus_tag="PXE92_002164"
     CDS             4153..4488
                     /locus_tag="PXE92_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL5761368.1"
                     /translation="MNRETGEQLEDEVEHIKQSIKDILLTAKGSRVMRRTYGSNLYKL
                     TDKPIAASLIMQLSAACVMALQQWEPRIAITRFKVEFAEDNYNKLICTLDFTLKHRKI
                     SIKGMRFTL"
     gene            4485..5402
                     /locus_tag="PXE92_002165"
     CDS             4485..5402
                     /locus_tag="PXE92_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HDL5761369.1"
                     /translation="MSEIVDLSKLPAPKVLEELDYETLLAERKAKFLSLYPESERAVM
                     AARLALESEPITKLLQENCYLQLLERQRINSAAQATMLAYATGTDLDVIAANFNVERL
                     VVQAEDLTASPPIVEELEPDDDFRQRVQLKIESVSVAGPRKAYTFHALSANGKIADVS
                     VISPQPAYVTVTLLSRDGNGAVASEIINAAKIALNDEEVRPIADRVTVQGASIVEYEI
                     NAVLHLYRGPEKEPILKAAKANLEAYINQTKRIGRDVTHSGIHAALHVAGVQNVEILQ
                     PRTDLVLTPYQAGYCVNYTLNVEVSDEYS"
     gene            5389..6021
                     /locus_tag="PXE92_002166"
     CDS             5389..6021
                     /locus_tag="PXE92_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HDL5761370.1"
                     /translation="MNTVKALLPPGSSLLEKRAAECLQQAVQNPIKFANLINPHKCPV
                     KFLPYLAWALSVDYWEEHWSEELKRETIIRSFEEHRKKGTASAVRRIVESLGYAFEIR
                     EWFAEKRQRQPGTFRVFVELKDKGISEKIYQELERLIEDAKPVSRHITELAVSATSKG
                     KANIFSGAHSGEIITIYPPKKLPVIVIKSKMDLFSATNSGEIITIYPNKR"
     gene            6024..>6562
                     /locus_tag="PXE92_002167"
     CDS             6024..>6562
                     /locus_tag="PXE92_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015981653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761371.1"
                     /translation="MEQKYKTILTHHGERVIVEALANKIPVPLKEMAIGDGNGSSITP
                     SASQTTLVREVYRAEITDLLEDPQNRHQMIAELLIPENVGGFIVREIGLFDEQGGLVA
                     VANCPENYKPVLEQGSGKVQYYRMILQVSSSDAVTLSINNNIVYATRTEFNEFVNNLS
                     SPDGYKHIGRCKSVAELRT"
BASE COUNT         2179 a         1231 c         1490 g         1662 t
ORIGIN      
        1 aaaattcaag tagttctttc tgcgttagat aaattaaccg caccatttaa gagtgtggta
       61 aaacagacgg agaaattatc tcaatcttta aaagtacaga gagatgaatt aaaagcattg
      121 gaaaaaacac aaagtaaaat gcaatcattt aaaaaaatgg acgatagcat taagaaatcc
      181 aatgaaacta tactcaaaca gacaaagcat ttagataatc tcaaaaataa aatcagccaa
      241 atgaaaaatg aacgaattga gctgaaagtg aaaatggatg cgaaaaaaag ggaatttcaa
      301 caaattacga aaggtggttc agcttggagt gcaagagccg catttttaga taaagatttt
      361 gaaaaaatgc aaagagaata tgaaaaactc ggtgcatcta tttcaagtgt cagccgaaaa
      421 agaacagaag aaaatcgggc attaaaggat tctcgccatc aacaagctaa gcaactttta
      481 tattttcgta gtttaagacg tgaattgaga gcaagcggca ttaatattaa agcttttgct
      541 caaagcgaaa ccaacttaac agacaagatt gcaaaagcaa atcaattaat cgaccaacaa
      601 aaagcaaaat tagaaaaact aaatgcggtt aaagctcgaa atgaaaaata ttgggcaact
      661 gtcgaaaagg taaaaaatac cagcgaacgt ttgcataatt taggacaacg ctcaatgatt
      721 agtggtgcgg caatttctgc ccctgttgtt gggctaggga aaggggttgt cggaatggct
      781 caaacagcgg gtaaatttga acaatttaat gctattttag aggtaaccga gggaagtgct
      841 gaaaaagcca agcaaagttt tgattgggtt aaacaatttg cagtagatac cccctcaaac
      901 cttgatgaag caatggaagc ctttgtaaag ttaagagcat acggtcttga tcctaccaat
      961 ggcttactac aaacattagg tgatacaggt gctgcaatgg gtaagcctgt aatgcaagca
     1021 gttgaggcaa tagcagatgc tttaacgggt gagaatgaac gcttaaaaga atttggtatt
     1081 aaaggaagtg tagttaaagg tacaaatatt attgagtatg cctacactga taaattaggc
     1141 aaacaacaag tcgcaaaagt aaacaaaaat aaccgaaaag aaattgagca aaccctaacc
     1201 cgtattttta acgaaaaata tgctggagca atggaaaaac aagctaaaac gctagttggt
     1261 atttgggcaa aaattgaaga ttattggaca aatttccaaa tgcaagtgat ggaatcggga
     1321 gcatttgact ggattaaaaa taaattgcaa tgggtgttag acagtttaga taaaatggct
     1381 gaaaatggcg agttgcaaaa atgggctgaa gatgtcggag ccgttattca agaaacagta
     1441 caaggcttat gggcttttgg tgaaaaaatt attgaagtgg ttaaatggtt agcgagcttg
     1501 gcacgggaga ataaagggct aattgcaaca ttcgttaaat ggtctgctat tcttggctct
     1561 agtttaacgg tgctaggagc ttttgcagtg gtggcaagtt ttgcattata tcctgtagca
     1621 agattggctc ttggtatcgg caaatttaca ggtgcaagca ccttattaaa taaggcatta
     1681 tttgatagta atgataaatt ccgattattc aataaatcac tttattcatc aggcactacg
     1741 gctgcttttg ttaaatcaaa atttaatcag ttagcaactt taccaaatgt gctgggaagt
     1801 agttttaata aattaggcgg tggcatcaaa atgctaattc cacagcttaa aacaaaagta
     1861 ttttggctca atatgctaaa aggtatttta ggcaagttgt ggagtgcaat ccgttttatt
     1921 ttctcaccgt tgaaattatt acttggtatt ttctcgccga ttggcttagc gattacagct
     1981 atttcggtag caggggtagc gttatataga aattgggaga aggtcagagc cttttttgga
     2041 ggctttttgc aaggattatc taaaggtctt gcaccagtat tagagagatt taaaccttta
     2101 ggaaaactat ttgaaactat atcaaactgg gttaaatcta cgtttaagtg gttatccgat
     2161 ttattaaccc cagcggataa aacatcggaa agtttagata aagcgagttc tgcaggagaa
     2221 aaattcgggc ttgcattggc tggtgcaata gacttggtaa catcacctgt tcagtggcta
     2281 gtcgatcagt ttaagtggat ttctgaaaat atgccgagtt gggacactat tggtgagggt
     2341 gtaaaaaagg cagctactgc aattgttccc accgagcacg ccaagcagat tactaaaacg
     2401 gcagaaatgt caaacaatat gtatgacccc aattatactc caccacaact tgagcaaaaa
     2461 tggattggtg gcttggttgg taacggtaaa ggaagaggtt ttgccacagg cggctacacc
     2521 ggcaatggtg gcaaatatga gcctgccggt attgtgcata agggcgagta tgtaatgacc
     2581 aaagaggcaa ctgcacgctt gggtgtggca aatcttaacc ggttaaatta tggcaaagtt
     2641 gctgggctaa ctgcacttgc gtcaagtgtt gcgtttgctc aaccaatgcc tgcggtcaaa
     2701 atcgacagca gaccaccgct gacggcaagc caaccaagcc caacagttgc accggtgtcg
     2761 caaaatatcc atatcaccat caacgccacc ggtgggcaag acccacaagc aatcgcccga
     2821 ctggttgcaa tggagttgga aaaacaacaa cgccaagcac aagcaagagc aagatcgtct
     2881 ttgagagaca ggggctaatt tgacaaagta gaatgaaaag cggacaatgc tctaaattgt
     2941 ccgcttttta taggagcaaa tgatgtttaa agaaaaagga tatgatgaat ttgtgaatga
     3001 atgtgtgcga aaaggtagag aagaacacaa agctggttta ggatttacgc tagagcaatc
     3061 tcgcttacat atcaaaaaaa ccattgagca aaaatcacaa gagctaaacg aatttcagcg
     3121 tgaagtggtt tatggctaaa attaccatta aaccacaagc attgagtcaa tttgacgaga
     3181 ttgtaaaaag tgttatcgaa tttaccggtt ttgaaacgag tggtattcga ttacaaagtg
     3241 atatttttga caaaatagag caaattgcat ttatgccact ctctggaaga gcaagagaag
     3301 atgggacaag agaaactttc gtcagacgtt atcgtattgt gtacgattac gataggcagg
     3361 cagatgaagt aattatctta gctatcattc acagtagccg actttaccca cgcccataat
     3421 cagtaagcga cctaatcggt cgctttttct ttgcctgtta aaacccattt cacacctcgc
     3481 atttataccc aaagcctttc gccttttgca aaatatcctc attttttaac cgcttgtaat
     3541 tgtaaaaatg agtgagccaa accacgccga acaaatccgc cgtttagaca atattatccg
     3601 acttggcact attgccgagg tggatttaac cacagcgact gcacgggtca attcgggcgg
     3661 tattacgacc gatttcttac cgtggctgac ttttcgtgcc ggtacatcgc aaacgtggtc
     3721 agctccaaca gttggcgagc aatgcgtggt gttaagcgtg agtggtgaat ttaccacagg
     3781 cgtgatctta tttgggattt acacccaaaa cgccccgagc caatccgccg atgagcatct
     3841 attccgcttt tcggacggtg cagaaatcag ctacaacacc gcaagcggtc aattaaccgt
     3901 aaaaaattgc aaagtggtga ttgtgcaggc gacagaatct atcacgctcg acacgcccac
     3961 ggttaaggcc acaaaaaatg tcgtgattgg gggcaaccta tccgtgaaag gcacaacctc
     4021 atcgcaaggt gcaatcagca cacaaggggc ggtaacagca aaaggcgatg tatcaggggc
     4081 gggaatcagt ttaggcagcc accatcacat tgagcaaggt gacggcagac caactagcgg
     4141 agcaaaacca taatgaaccg agaaacaggc gaacagcttg aagacgaagt agagcatatc
     4201 aagcagtcta tcaaagatat tttgctgacg gcaaaaggca gtcgggtaat gcggcgaacc
     4261 tatggcagta atctctacaa gctaactgat aaaccgattg ccgcaagtct gattatgcaa
     4321 ctctccgctg cgtgcgtgat ggcgttgcag caatgggagc cacgtatagc gatcacccga
     4381 tttaaagtgg aatttgccga agataactac aataagctga tttgcacctt agattttacc
     4441 cttaagcacc gaaaaatcag catcaaagga atgcgtttta cactatgagc gaaattgtcg
     4501 atttatccaa actccccgcc ccgaaagtac tggaagaatt ggactatgaa accttactgg
     4561 cagagcggaa agccaagttt ttatccctct acccagaaag cgaacgagcg gtaatggctg
     4621 cacggttagc gttggagtct gagcctatca ccaagttact acaagaaaat tgctatttgc
     4681 agctactcga acgccaacgc attaatagtg cggctcaagc cacaatgctt gcttatgcta
     4741 ccggtacgga tttagatgtc atcgcagcca actttaatgt tgagcggctt gtagtgcaag
     4801 ctgaagactt aactgcaagc ccgcctatcg tcgaagagtt agagcctgat gatgatttcc
     4861 gtcagcgtgt gcagttaaaa attgaaagtg tttcggttgc cggtccacgg aaggcttaca
     4921 cctttcacgc cctgtctgct aacggaaaaa ttgccgatgt gtccgtcata tcaccacagc
     4981 cagcttatgt aacggtaacg ctgctttctc gtgatggcaa cggagccgta gcctcagaaa
     5041 tcatcaatgc ggccaaaatt gctctcaatg atgaagaggt tagaccgatt gccgatagag
     5101 taaccgtgca aggggcaagc attgtggaat atgaaattaa tgcggtgttg catctctacc
     5161 gtggacctga gaaagagcct attttaaaag cggcaaaagc taacttagag gcttacatca
     5221 accaaacaaa acgcattgga cgagatgtga ctcactcagg tatccacgcc gccttgcacg
     5281 ttgccggtgt gcaaaatgtg gaaattttgc agccgagaac tgatttggtg ctgacacctt
     5341 accaagccgg ttattgtgtc aattacacgc taaatgttga ggtgagcgat gaatacagtt
     5401 aaagcattat tgccacccgg ttcatcactt ttggaaaaac gagctgccga atgtttgcaa
     5461 caagcggtac aaaatccgat taaatttgca aatttgatta atccacacaa atgccccgtg
     5521 aaatttttgc cctatcttgc gtgggcctta tcggtggatt attgggaaga gcattggagt
     5581 gaagaattaa aaagagaaac cattattcga tcttttgaag aacaccgaaa gaaaggcaca
     5641 gcaagtgcag tgcgaagaat tgtggaatct ctcggctatg cttttgaaat ccgtgagtgg
     5701 tttgcggaaa aacggcaacg gcagcccggg acgtttaggg tttttgttga gttaaaagat
     5761 aaagggatta gcgaaaaaat ctaccaagaa ttagaaaggt tgattgaaga tgcaaaaccg
     5821 gtatcaaggc acatcacaga attagcagta tcagccacct caaaaggcaa agcaaatatt
     5881 tttagtggag cacacagtgg cgaaattatt acgatttatc cacctaaaaa gctccctgtt
     5941 attgtcatta aaagcaaaat ggatttattt agtgcaacaa acagtggcga aattattacg
     6001 atttatccta ataagaggta aaaatggaac aaaaatataa aacaatatta acccatcacg
     6061 gtgagcgagt gatcgttgag gctcttgcaa ataagatacc agtgccactt aaggaaatgg
     6121 ctataggaga tggtaacggg tcatcaataa ctccaagtgc atctcaaacc acacttgtaa
     6181 gagaagttta tcgtgcggaa attacagatt tgctagaaga cccgcaaaat cgccatcaga
     6241 tgattgctga attactaatc ccagaaaatg taggtggatt tattgtccga gaaatagggt
     6301 tatttgatga acaaggtggt ttggttgctg tagcaaattg ccctgaaaat tataagcctg
     6361 tattagaaca aggcagtggt aaagtccaat attaccgaat gattttacaa gttagtagta
     6421 gtgatgcggt caccttatcg attaacaata atattgttta cgccacaaga actgagttta
     6481 acgaatttgt aaataacttg agtagtcctg atggctataa acacatcgga cgctgcaaat
     6541 ctgtagcaga actccgcact at
//
LOCUS       DANMBQ010000126         6489 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.127, whole genome shotgun sequence.
ACCESSION   DANMBQ010000126 DANMBQ010000000
VERSION     DANMBQ010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6489
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.127"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(47..122)
                     /locus_tag="PXE92_002168"
     tRNA            complement(47..122)
                     /locus_tag="PXE92_002168"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(87..89),aa:Asn,seq:gtt)
     gene            complement(238..987)
                     /gene="moeB"
                     /locus_tag="PXE92_002169"
     CDS             complement(238..987)
                     /gene="moeB"
                     /locus_tag="PXE92_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HDL5761372.1"
                     /translation="MELTDHEMLRYNRQIILKSVDFDGQEKLKASRVLIVGLGGLGCA
                     ASQYLASAGVGHLTLVDFDLVSLSNLQRQILHTDATIGQPKVESAKARLAAINPNIQI
                     ETINQRCSDEQLAKLIANVDLVLDCTDNVTVRNQLNLQCFKQKRPLVSGSAIRFEGQV
                     SVFCYQEQEPCYECLSRLFGDATLSCVEAGVIAPIVGIIGSIQALEAIKVLLNIGRTL
                     SGKLLMIDGLHFSVREMALPKQNNCPVCTSY"
     gene            complement(1086..2315)
                     /gene="moeA"
                     /locus_tag="PXE92_002170"
     CDS             complement(1086..2315)
                     /gene="moeA"
                     /locus_tag="PXE92_002170"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDL5761373.1"
                     /translation="MALLALSDALDNMLARLSTPKLVEQLPLNECANRVLAEDIFSPI
                     NVPNFDNSAMDGYAVRISDLAQNLTLNVAGKAFAGNPFNGEIKAGECVRIMTGALVPK
                     GVDAVVMQEETTLNSDGSVTFNHIPKLGSNIRRIGEDVKQGALVLKKGSLLNVASLPL
                     LASLGIASVPVFVKLKVAILSTGDELTSVGEPLSEGKIYDTNRFAVRLMLEKLNCEIL
                     DFGILPDDPILFEQTFRQAQQQADVLITSGGVSVGEADFTKDVLEKLGEIGFWKIAMK
                     PGKPFAFGKLEQAWFFGLPGNPVSALVTFYQLAQPALAKLSGLSTDKIAKLTQNLTAC
                     SAGKLKKAVGRQDFQRGYYYANEKGELEVRAVGTQGSHIFSAFNESNCFIVLEAERGN
                     VDAGEKVTIQPFNSLMY"
     gene            complement(2337..2954)
                     /locus_tag="PXE92_002171"
     CDS             complement(2337..2954)
                     /locus_tag="PXE92_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006719828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HDL5761374.1"
                     /translation="MFDSLAVQFVVLWAVIDPIGSVPVYLAKTIGLPIEARRKIALNA
                     VLIAAGILIFFLIGGQVLLESMQIPLPAFQAAGGLVLLLFALTMIFGESKPEQEMRIS
                     SNLNELAVYPLAVPSIASPGAMMAIVLLTDNHRFHIGDQIITAGIMLLVLFITYLLLL
                     AANRIQHLIGNAGAAIISRVMGLILAAIAVNNLLIGVRDFFVQIS"
     gene            complement(3022..4233)
                     /locus_tag="PXE92_002172"
     CDS             complement(3022..4233)
                     /locus_tag="PXE92_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDL5761375.1"
                     /translation="MISRQMQSLLKRLVAQFPAVLVTGARQVGKSTLLQHIGEGYQYI
                     TFDDPMLLELAKQESRLFFLNHQGKLILDEVQYVPEIFALLKLEIDKKQQNGLFLLSG
                     SQAFELMQNVSETLAGRIAILKLQGLSLREILGVKFDQPFLPTTDYLLAREQELKSPE
                     NIWQLIHKGDMPRLYAQEVDWEIYYRSYVATYIERDVRQLTNIASTTDFTRFMVSIAS
                     RSGELLNYSNIAQEVGVSNETIKRWVAILQTSGIIYLLQPYHNNHLKRAIKTPKVYFL
                     DTGLMAYLTKWLTPETIAQGAKSWQFFETFVVSQIIKSFHNQGIEPPIYFYRDTNQKE
                     IDLIIEYDRTLYPIEIKVTASPTKKMAKSFDLLNSVSSEWKLGQGAIINQYPTKLYLS
                     ENLVALPVSYL"
     gene            4430..6361
                     /locus_tag="PXE92_002173"
     CDS             4430..6361
                     /locus_tag="PXE92_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5761376.1"
                     /translation="MIFFTDLILKRGHSVLIDNSSVTIHTGQKVGLVGKNGCGKSSLF
                     ALLKNELQPEGGDVSLPKNWAISWVNQETPALAISALDYVIQGDREYTHLMAELDIAN
                     EKNDGNRIAIIHTQLDTIDAWTIQSRAATLLNGLGFSTEQLQLPVKSFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLERWLSNYRGTLLLISHDRDFLDPIIDRVIH
                     IEHQKLNEYTGNYTSFEIQRATKIAQQNAAYQQQQRKVAHLQSFIDRFKAKATKAKQA
                     QSRIKALEKMELIAPAYADSPFEFEFRPPLALPSPLLMMEKVSAGYAEKTVLESVKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELPPQNGSIQLAKGVQLGYFAQHQVDTLRFDE
                     SPLWHLQKLAPEKTEQELRNYLGGFDFKGDKVVQAVKSFSGGEKARLVLALIVWQRPN
                     LLLLDESTNHLDLEMRQALVDALTYYEGSLVVVSHDRHLLRSTVNEFYLVHDRKVEKF
                     KGDLDDYQKWLNEQNALANEPKSVLAKDSANSTACSSTNENSAAQRKEQKRLEAERRQ
                     QTAPLRKKITQLEKELEKATEKLNKLEAMLTESDIYEAENKAKLTETLAKQLEAKRLV
                     EEIEMQWLEAQEEFETMLR"
BASE COUNT         2003 a         1459 c         1260 g         1767 t
ORIGIN      
        1 tataaaagga gacaaataaa acaagaacaa aagaaaaata aaatcttggc tcctcctgcg
       61 ggactcgaac ctgcgacata tggattaaca gtccaccgtt ctaccgactg aactaaggag
      121 gaattaacgg tgtaaataat aggctaaaac gttttagccg tcaaataaaa aaaataaact
      181 gtcgttcatt ttttacattt cttgacattt tttcgccaat aagtatgaga aaaatactta
      241 ataagaggta caaaccggac agttattttg cttaggtaat gccatttctc tgacagaaaa
      301 atgcaagccg tcaatcatta acaattttcc ggaaagagtt ctgccgatat taagtagcac
      361 tttaattgct tccaacgctt gaatactgcc tatgatgcca acaatcggag caatgacccc
      421 cgcttcaaca caacttaaag tcgcatcacc aaacaacctg cttaaacatt catagcacgg
      481 ttcttgttct tgataacaaa atacactcac ctgcccttca aatcgaattg ccgaaccgga
      541 aacaagcggt cgtttttgct taaaacattg caaatttaac tgattacgca cagtaacgtt
      601 atcggtacaa tccagcacta aatctacatt tgcaatcagc ttggctaact gctcatcgga
      661 acatcgctga ttgatagttt caatctgaat gttcggatta atcgccgcta atcgagcttt
      721 ggcagattcc acctttggct gcccgatagt cgcatcggta tgtaaaattt ggcgttgcag
      781 attagaaagt gagaccagat caaaatccac caaagtcaaa tgcccaacgc cggcagaagc
      841 taagtattgc gatgccgcac agcccaaacc acctaaaccg acaatcaaca ctcggctggc
      901 ttttaacttt tcctgcccgt caaaatccac gctttttagg ataatctggc gattataacg
      961 tagcatttcg tgatcggtaa gttccatttt tacacctaaa gagtaaacga tggcgcaagc
     1021 gtccacgctt gtgcctatat ttttattgct agcacaagcg tggacgcttg cgctatctta
     1081 attcattaat acatcagcga attaaacggc tgaatagtga ctttttcccc agcatcaaca
     1141 ttgcctcgtt ctgcttctag cacaataaaa cagttacttt cattaaaagc gctgaaaata
     1201 tgtgagcctt gcgtgccaac tgcacgaact tctaactcac ctttttcatt ggcatagtaa
     1261 tagccccgtt ggaaatcttg gcgaccgacc gcttttttca attttccggc actgcaagcg
     1321 gttagatttt gggttaattt tgcaatttta tctgtcgata aacccgaaag tttggctaac
     1381 gccggttgcg ctaattggta gaaagtcact aatgcagaga cagggttgcc cggcagccca
     1441 aaaaaccaag cctgttctaa tttaccgaat gcaaaaggct tgcccggctt catcgcaatt
     1501 ttccagaaac cgatttcgcc taatttttcc agtacatctt tggtaaaatc tgcctctccc
     1561 acagatacgc cgccactggt aatcaacaca tcggcttgct gttgggcttg cctgaaagtt
     1621 tgctcaaaca gaattgggtc atcaggcaaa atcccaaaat ctaaaatctc gcagttgagt
     1681 ttttccagca ttaaacgcac cgcaaaacgg ttggtgtcgt aaatttttcc ctcactcaaa
     1741 ggctcgccaa ctgaggttaa ttcatcgccg gttgaaagaa ttgccacttt taattttaca
     1801 aaaacaggca cagaagcaat accgagtgaa gctagcaacg gtaaactggc tacattcaat
     1861 aatgagcctt ttttcaagac caatgccccc tgtttaacat cttccccaat gcggcgaatg
     1921 ttactgccta attttggaat atggttaaag gttacagagc catcggaatt taacgtagtt
     1981 tcctcttgca ttacaacggc atcaacgccc tttggcacta atgctcccgt cataatccgc
     2041 acgcattcgc ctgcctttat ttcgccgtta aacgggttac cggcaaaggc tttaccagcc
     2101 acattcaagg ttaaattttg tgctaaatct gaaatacgaa ccgcgtagcc gtccatcgcc
     2161 gaattatcaa aattcggtac attaatcggg gaaaaaatat cctctgccaa cactcggtta
     2221 gcacactcat ttaacggaag ttgttccacc aatttaggtg tcgataaacg agcaagcata
     2281 ttatctaacg catcactcaa agccaaaagt gccataattt cctacctatt caacgtttag
     2341 ctaatttgta caaagaaatc ccgtacgcca atcaacagat tattcaccgc aatcgcagcc
     2401 agaattaacc ccatcactcg gctgataatc gcagcccctg cattaccaat aaggtgctga
     2461 atacggtttg ccgctaatag caacaaatag gtaataaaga gtaccaaaag cataatgccg
     2521 gcggtgataa tttgatcgcc gatatgaaaa cggtgattgt cggttaataa tacgattgcc
     2581 atcatcgccc cgggagaagc aatcgacggt acagctagcg gataaaccgc caattcattc
     2641 agattactgc tgatccgcat ttcttgctcg ggcttgcttt cgccaaaaat catcgttaaa
     2701 gcaaataaca acagcactaa gccgcctgcc gcttggaatg caggtaacgg aatctgcatt
     2761 gattctaaca gcacttgccc accgataagg aagaaaatca aaataccggc ggcaatcaag
     2821 accgcattta gtgcaatttt acgccgtgct tcaatcggca aaccaatggt ttttgccaaa
     2881 taaacaggaa cagaaccaat cgggtcgatc accgcccata aaaccacaaa ttgtaccgct
     2941 aatgaatcaa acatattctc tcctgttatc ttgataattt gcaaaatttt agcataaaac
     3001 aaccgcttgc acggcttttt cttacagata gctcaccggt aacgctacca aattttcact
     3061 taaataaagt ttggtcggat attggttaat aatcgctccc tgccctaatt tccattcact
     3121 agaaactgag tttagcaagt caaaactttt tgccattttt ttggttgggc ttgccgtgac
     3181 cttaatttct atcggataaa gcgtgcgatc atattcaata attaagtcga tctctttctg
     3241 gttagtatca cggtaaaaat aaatcggcgg ctcaattcct tgattatgaa aggattttat
     3301 aatttggctt accacaaagg tttcaaagaa ctgccagctt tttgcccctt gagcaatagt
     3361 ttcgggggta agccatttgg ttaaatacgc cattaacccg gtgtctagaa aatacacttt
     3421 tggggtctta attgcccgtt tcaaatgatt gttgtggtat ggctggagca aatagataat
     3481 gccggaagtc tgcaaaatgg cgacccaacg tttaatcgtt tcattcgata ctccaacttc
     3541 ttgagcaata ttactgtaat tgagtagctc accactacga gaggcaatag agaccataaa
     3601 acgggtaaaa tccgttgtgc tggcaatatt ggttaattgg cgaacatctc gctcaatgta
     3661 ggtcgctaca taagagcgat aataaatctc ccaatccacc tcttgtgcat ataaacgagg
     3721 catatcgcct ttatggataa gctgccagat gttctccggt gattttaatt cttgctcccg
     3781 agctaacaaa tagtcggttg tcggtaaaaa aggttgatcg aacttcaccc ctaaaatttc
     3841 acgcaacgaa agcccttgta attttaaaat agcaatacga ccggcaagtg tttcactcac
     3901 attctgcatt aattcaaagg cttgcgaccc cgaaagtaaa aacaaaccgt tttgctgttt
     3961 tttatcaatt tctaacttta ataacgcaaa aatttcaggc acatactgta cttcgtctaa
     4021 aataagcttg ccttgatggt ttaaaaaaaa caggcgagat tcttgtttag ccagctccag
     4081 caacattggg tcatcaaaag taatatattg atagccctca ccaatatgtt gtaacaatgt
     4141 cgatttacca acctgtcttg cccctgtcac taaaacggca ggaaattgcg ccacgagtcg
     4201 ttttaacagc gattgcattt gccgagaaat catttttcct ccaaaatagc ctaaatcaag
     4261 tttaacctca tatataatgt tgaattaaac ttaatttaaa ttatttttta agtttaattc
     4321 aacacagaat attgaattaa actgaatttc ttattttagt tcacaaagca atggctttgc
     4381 ttttttatgc taaaatacgc aaaattttta acaaaataga ccgcttgcaa tgatcttttt
     4441 tacagactta attttaaaac gagggcattc cgttctcatt gataacagct ccgttaccat
     4501 tcacaccggg cagaaagtcg gtttggtggg aaaaaacggc tgtggcaaat cctctctttt
     4561 tgccttactg aaaaatgaat tacaacctga aggtggcgat gtatcgttgc cgaaaaactg
     4621 ggcgatctcg tgggtaaatc aagaaacgcc tgcgttagct atttcagcgt tagactatgt
     4681 gattcaagga gatcgggaat atacccatct tatggctgag ctagatatcg caaatgaaaa
     4741 gaatgacggc aaccgcattg cgattatcca tactcaactt gataccattg atgcttggac
     4801 aattcaatcc cgtgccgcta ccctgcttaa cggcttgggg tttagcaccg aacaactgca
     4861 actgccggtg aaatccttct ccggtggctg gcgtatgcgg ttaaatttgg cacaagctct
     4921 gatttgtcgt tccgatctgt tattgcttga cgagccaacc aaccacttag acttagatgc
     4981 ggttatttgg ttggagcgtt ggctgagtaa ctatcgtggc actttattgt taatttcgca
     5041 cgaccgtgat tttctcgatc cgattatcga tcgggtgatt catattgaac atcaaaagct
     5101 caatgaatac accggcaatt acacctcgtt tgagattcaa cgtgcgacca aaatcgccca
     5161 gcagaatgcc gcttatcagc aacagcaacg taaagttgct catttgcaga gttttatcga
     5221 tcgctttaaa gccaaagcga ctaaagcgaa acaggcacaa agccgaatta aagcgttgga
     5281 aaaaatggag cttattgccc cagcctatgc tgattcgccg tttgaatttg aatttcgccc
     5341 accgcttgca ctgcctagcc cgttattaat gatggaaaaa gtcagtgccg gctatgcgga
     5401 aaaaacggtg ttggaatcgg tcaaactgaa tttggttccc ggctctcgta ttggtttact
     5461 cgggagaaac ggtgcaggga aatccacgct gattaaatta ttggcgggcg aacttccgcc
     5521 ccaaaacggc tcaattcaac tggcaaaagg cgtgcaactc ggctatttcg cccaacatca
     5581 ggtggataca ctacgttttg atgaaagccc actttggcat ttacaaaaac tcgcaccgga
     5641 aaaaaccgag caggaattac gcaattattt aggcggtttc gattttaaag gcgataaagt
     5701 ggtacaagct gtgaaatcat tctccggcgg agaaaaggcc cgtttagtgc ttgccttaat
     5761 tgtatggcaa cgcccgaatt tactgctatt agatgagtca accaaccatt tagatttaga
     5821 aatgcgacaa gccctggttg atgcactgac ctattacgaa ggctcgctag tggtggtttc
     5881 gcacgaccgc catttattgc gtagcaccgt gaatgaattt tatttagtgc acgaccgcaa
     5941 agtggaaaaa tttaaaggtg atttagacga ttaccaaaaa tggctcaatg agcaaaacgc
     6001 cttagccaac gagccgaaat ccgtacttgc aaaagattcg gcaaattcga ccgcttgctc
     6061 tagcaccaat gaaaatagtg cagctcaacg caaagagcaa aaacgcttag aggcagagcg
     6121 ccgccaacaa accgccccat tgcggaaaaa aattactcaa ctggaaaaag agttagaaaa
     6181 agcaaccgaa aaattaaata aactcgaagc aatgcttacc gaaagcgaca tttatgaagc
     6241 cgaaaataaa gcaaaactaa ctgaaacact tgcgaaacag ttagaggcaa aaaggctggt
     6301 tgaagaaatt gaaatgcaat ggttggaggc tcaggaggag tttgagacca tgttacgcta
     6361 gggttctaca agatagcgca agcgtccacg cttgtgccat ttaagggaac tatacacctc
     6421 aaaaaaacaa tgatcattaa gctagctttt ttataaattt aaaaacctat agattaaata
     6481 aataatgat
//
LOCUS       DANMBQ010000127         6483 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.128, whole genome shotgun sequence.
ACCESSION   DANMBQ010000127 DANMBQ010000000
VERSION     DANMBQ010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6483
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.128"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(5..916)
                     /locus_tag="PXE92_002174"
     CDS             complement(5..916)
                     /locus_tag="PXE92_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RimK family alpha-L-glutamate ligase"
                     /protein_id="HDL5761377.1"
                     /translation="MKWLMLCREPRLYSCCRIKAACEAKGIELDILDQNRMLLGLENG
                     EFKIYYQAGESYDNNRPEPVLLPNYDGILPRFGTGSTEMGCSVLRHFEAKGIPVLNHS
                     AAFALARDKWRTLQKLAKHNLPVPNTNFAGHLVSVKSQLNQFAFPLISKVLNGSQGNG
                     VMLFEGKNNAEAVLATFRQVNEPYLCQQFVGDAKGQDIRAFVIGNEVVAAMSRTSVTG
                     DFRANIHQGGTAQPIELTQMERALAIKATKTIGLDIAGVDFLRTEKGVVILEVNASPG
                     FEGIERVNDVDIASEMVSYFINKMKNA"
     gene            complement(913..1632)
                     /gene="nfsA"
                     /locus_tag="PXE92_002175"
     CDS             complement(913..1632)
                     /gene="nfsA"
                     /locus_tag="PXE92_002175"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NADPH nitroreductase"
                     /protein_id="HDL5761378.1"
                     /translation="MQSKPTLETILSHRSIRKFTEQPISEEIFQILIEAGKAASSSNH
                     LQCVTVIRVTDRQIRETLKAVSGMQYVVDCAEFLVFCIDFNKHKQLVPESQLEWAEVS
                     LIGAVDTGILAQNVFLAAESLGLGAVYIGALRNDIERVSKALNLPEYCVPLVGMCLGY
                     PAQEPAIKPRLPNSLVCYNNQYQDFDWTEFAKYNENLTAYYQARIGEPQQWQAAIHKT
                     LDKPVRPHILPFFNQKGLLKK"
     gene            complement(1644..2429)
                     /gene="mtgA"
                     /locus_tag="PXE92_002176"
     CDS             complement(1644..2429)
                     /gene="mtgA"
                     /locus_tag="PXE92_002176"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HDL5761379.1"
                     /translation="MEQSMAKRNKRFLSSLLKKIGLFFIPRKIKSKLGWLWFGSSRLL
                     TFGGTFFLIPILIFSVLPVPYSAYMVQKKVENLVQGKSYPIKKEWVSLNEISWQMQMA
                     VIASEDQKFESHFGIDLQAIETALKLNAKSKKVRGGSTISQQTVKNMFLWHGQSWLRK
                     GIEVPLTLLVENVWSKDRILEVYLNIAEFGNGIFGVEAAAKHFFKKSAKQLTLQESAL
                     LAASLPNPLVFRVDKPGPSMRKRQAWIMRQVSLLDGKNYLDKL"
     gene            complement(2404..2724)
                     /gene="trpR"
                     /locus_tag="PXE92_002177"
     CDS             complement(2404..2724)
                     /gene="trpR"
                     /locus_tag="PXE92_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HDL5761380.1"
                     /translation="MKTLYNQRDPNEWTQFLALLEQAVAEDKLEPFFSMFLTADERGS
                     LGLRLQIVQALLKGEDSQREIQQNLNTSAATITRGSNMLKTLDQDFLQWLNGKVNGTV
                     NGKA"
     gene            complement(2804..3445)
                     /gene="lolA"
                     /locus_tag="PXE92_002178"
     CDS             complement(2804..3445)
                     /gene="lolA"
                     /locus_tag="PXE92_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HDL5761381.1"
                     /translation="MKTLFKKSVFGLALFGLANVALADAQSVAELQRRLEQVSQYSAD
                     FDQTVRSSKGKQIQQGKGKFQVKRPNLFRMDTKSPQENLIVSDGKDLWFYDPFVSQVT
                     VNTVQDAVNNTPFVLLTSGDKSHWDQYDVSQSADTFVLKPKSKKSNLKQFDVRIDQSG
                     LLKGFSTIERDGQSNLYVLRNITTGGVSSDLFKFSVPKGAELDDQRGGKKSKK"
     gene            complement(3556..6414)
                     /gene="polA"
                     /locus_tag="PXE92_002179"
     CDS             complement(3556..6414)
                     /gene="polA"
                     /locus_tag="PXE92_002179"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDL5761382.1"
                     /translation="MATIAKNPLVLVDGSSYLYRAFHAFPPLTNRLGEPTGAMYGVLN
                     MLKSLISQVNPSHIAVVFDAKGKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRIIKAL
                     GIPLISIEGVEADDVIGTLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLL
                     DREGVIEKYGIPPELIIDFLALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANL
                     DQIATLSFRGAKNFAPKLEAEKANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELA
                     QLFEHYEFKRWLNEVNQNANPVTQTSAEKVPNNYQVTQAVRNEENVANVVEIDRSKYE
                     TVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQ
                     KAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDL
                     TIFANYGIELQGVAFDTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL
                     TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIER
                     NGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLGLPVLK
                     KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHT
                     SYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMA
                     HLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGL
                     SNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSG
                     NAILRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVFEVKA
                     DKIDHYSQLIKTEMEKAISLKVPLIAEVGVGENWDEAH"
BASE COUNT         1769 a         1504 c         1225 g         1985 t
ORIGIN      
        1 caaatcaagc attcttcatc ttattgataa aataagaaac catttcagaa gctatatcaa
       61 catcatttac tctctctatg ccttcaaatc ctgggctggc attgacttct aaaataacta
      121 cgcctttctc tgtccgcaga aaatcaacgc ctgcaatatc aagccctatc gttttagttg
      181 ctttaattgc taacgcacgt tccatctgag ttaattcaat cggttgagcc gttccacctt
      241 gatgaatatt ggctctaaaa tcgcctgtta cgctggttcg gctcatggca gcaaccactt
      301 cattgccaat cacaaacgcc cgaatatctt gccctttagc gtcgcccaca aattgttggc
      361 atagataagg ctcatttact tgcctaaagg tcgctaacac ggcctcggca ttatttttgc
      421 cttcaaatag cattacgcca ttcccctgtg aaccatttag cacttttgaa ataagtggaa
      481 aagcaaattg attgagttgt gatttcacag aaaccaaatg ccctgcaaaa ttcgtattag
      541 gaaccggcaa attgtgtttg gctaattttt gtaatgttcg ccatttgtct cgggctaacg
      601 caaatgccgc tgaatgattt agaacaggaa tacctttcgc ctcaaaatgg cgtaacaccg
      661 aacagcccat ttcggtactg cctgtgccaa aacggggtaa aatgccgtca taattcggca
      721 acaataccgg ctccggacgg ttgttatcat agctctcgcc agcttgatag tagatcttaa
      781 attcgccatt ttctaacccg agtagcattc tattctggtc taaaatatcc agctcaatcc
      841 cctttgcctc acaagcggct tttattcgac agcagctata taaacgaggc tctcgacata
      901 gcattagcca cttcattttt tcagcaatcc tttctgattg aaaaacggca aaatatgcgg
      961 acgaacaggc ttatccaatg ttttatgaat agctgcttgc cattgttgtg gctcgccgat
     1021 tctggcttgg tagtaagcgg tcaaattttc attatatttt gcaaattcag tccaatcaaa
     1081 atcctgatat tgattgttat aacaaaccaa actattcggc aaacgaggtt ttattgccgg
     1141 ctcttgtgcc ggatacccca aacacatacc caccagtgga acacaatatt ccggcaagtt
     1201 aagggcttta gaaacccgct caatatcatt acgcaatgct ccaatataca ccgctcccag
     1261 ccctagtgat tcggcggcta aaaatacatt ctgggccaaa ataccggtat ctaccgcccc
     1321 aatcaacgac acctccgccc attccaactg cgattcaggg acaagttgtt tgtgtttatt
     1381 aaaatcaatg cagaacacca aaaattcagc acaatctact acatattgca tacctgaaac
     1441 ggcttttaat gtttctcgaa tctgccgatc ggttacacga atcaccgtca cacattgcag
     1501 atgatttgaa cttgaagccg ctttacctgc ctcaattaag atttggaaaa tctcttcaga
     1561 aataggctgt tcggtaaatt tacgaataga acggtgagat aaaatcgtct caagagtcgg
     1621 tttactttgc atatttttct cgtctaaagt ttatctaaat aatttttgcc atcaagcaaa
     1681 cttacttgtc gcataatcca cgcttggcgt tttcgcatac tcgggccggg tttatctacc
     1741 ctaaacacca acgggttagg caaagaggct gccaatagtg cggattcttg caaggttagc
     1801 tgtttggctg attttttgaa aaaatgcttt gcggctgctt ccaccccgaa aatgccgtta
     1861 ccaaattccg caatattgag gtacacctct aaaatccgat ccttactcca cacattttcg
     1921 actaacaggg ttaaaggcac ttcaatccct ttgcgtaacc agctttgccc gtgccacaaa
     1981 aacatatttt ttaccgtttg ttgcgaaatg gttgaacctc cacgcacttt tttggattta
     2041 gcattcagtt tcaaggcagt ttctatcgct tgtaagtcaa tgccaaaatg gctttcaaac
     2101 ttttgatctt ctgaggcaat cacagccatt tgcatttgcc acgaaatctc attcaggctc
     2161 acccattctt ttttgatcgg gtaagatttc ccctgaacca gattctccac ctttttttgc
     2221 accatatacg cagaataagg caccggtaac accgaaaaaa tcagtatcgg aatcaggaaa
     2281 aatgtgccac caaaggttaa taagcgacta gaaccaaacc aaagccagcc cagtttactt
     2341 tttattttgc gaggaataaa aaaaagccct attttcttca aaagagagct taaaaatcgc
     2401 ttgttacgct ttgccattga ctgttccatt aaccttgccg ttcagccatt gcagaaaatc
     2461 ttggtcgagt gttttaagca tatttgaacc acgagtgatg gttgccgcac tggtatttaa
     2521 attttgttgg atttcccgtt gcgaatcttc accttttagc aaagcttgca caatttgtaa
     2581 acgcaagcct aatgaacctc gctcatcggc ggtgagaaac attgagaaaa acggctcaag
     2641 tttatcttcc gcaaccgctt gttcaagcag agccaaaaac tgcgtccact cgtttggatc
     2701 tcgctggtta tagagtgttt tcatactgtc ccttgaagta aaaacggtga caagcggtca
     2761 gatttttaca aaattttgca gaaaaacgac cgcttgctct ccattatttt ttcgattttt
     2821 taccgccacg ttggtcgtct aactctgccc ctttcggtac gctgaattta aacaaatcgc
     2881 ttgagacacc gccggtagta atattgcgta acacatataa gttactttgc ccgtcacgct
     2941 caatggtact gaaacctttt aataaaccgc tttggtcaat ccgcacatca aactgtttta
     3001 aattgctttt tttcgatttt ggcttaagca cgaaagtatc agcactctgg ctgacatcat
     3061 attgatccca gtggctttta tcaccgctgg ttaataagac gaatggcgta ttattaactg
     3121 catcttgcac ggtatttacc gtaacttgtg aaacgaaagg atcgtaaaac cataaatctt
     3181 tgccgtcaga tacaatcaaa ttttcttgtg gtgatttggt atccattcta aataagttcg
     3241 ggcgttttac ttggaatttg cctttgcctt gctgaatttg tttacctttg ctagaacgca
     3301 cggtttggtc gaaatccgca ctatattggc ttacttgttc caaacggcgt tgtaattctg
     3361 caacagattg agcatcagcc aatgccacat ttgccaagcc aaataacgct aaaccgaata
     3421 ccgatttttt aaataatgtt ttcatttgtt ttccttttta ccaacaagaa ttttcttgtt
     3481 tgacaataaa atcatcaaaa gtttcatatt aatgaactgt tacaacaata caataaaagt
     3541 cgtgaattgt atagtttaat gagcttcgtc ccagttttcg cctacgccaa cttcggcaat
     3601 cagtggcact ttgaggctaa tcgctttttc catttcggtt ttgattaatt ggctgtaatg
     3661 gtcgatttta tcggctttga cttcaaacac caattcatcg tgaacctgca taatcatttt
     3721 gatttcatca ttatcacgaa tcgcattatc aataccaatc atcgccacct taataatatc
     3781 ggcagccgtg ccttgcattg gggcgttgat tgccacccgt tctgctgctt tacgcaaaat
     3841 agcattgccg gatttaatat caggcaagta caaacggcga ccaaataggg tttcaacata
     3901 gcctttttca actgcaactt cacgaatatc ggtcataaat tgttgaaccg ccgggtaacg
     3961 ttggaagtag agatccatat atttttgagc ctctgcacgc ccaatcccta attggtttga
     4021 aagcccaaat gacgacattc cgtaaatcag cccgaagtta attgctttcg cactgcggcg
     4081 ttgttcggag gtgacttcac ctaactccac cccgaaaatt tcggcagcgg tagcacggtg
     4141 aatatctttg ccctccgcaa aggcgttaat cattccctca tcattcgata aatgagccat
     4201 aatccgtagc tcaatttgtg aatagtcggc agcgacaatt ttataacctt ctctcgcgac
     4261 aaaagcttgg cgaatccgtc tgccctcttc attgcggatc ggaatgttct gcaaattcgg
     4321 atcgctggaa gaaaggcgtc cggttgcggt gactgcttga ttgtaagagg tatgcacccg
     4381 ccctgttttt ttgttaatca gttgtggtaa tttatcggtg taggtagatt tcaacttact
     4441 taacccacga tgctccatta ataacttcgg cactaaatgc ccttgttgag ccaactcgtc
     4501 taacacttct tcgttggttg agggtgcacc ttttggagtt ttcttcaaca ccggcaagcc
     4561 taatttttca aacaaaatct cttgtaattg tttagttgag gcaagattga aggtttgccc
     4621 tgcttctgcg tgtactaatg tttcaacttc ctccaaacgt ttttcaattt cagccgattg
     4681 ggtcaataat tttttcgggt caatcaacac gccattgcgt tcaattcgag aaagtacgcc
     4741 cacaagtggc atttcaattt catcgaataa cttcaccaat tcaggctctt gctgtagttt
     4801 ttcccacaat acttggtgga gtttcatcgt cacatcggca tcttctgccg catattcagc
     4861 cgcttttgct atctcgattt tatcgaaggt cagttgattt ttccccttac cagcaagctc
     4921 ttcaaacgga atcgttttat gccccaaata acgggcggct aaatcgtcca tattatgacg
     4981 accggtgctg ttttgggtgt aagattcaat catcgtatca aaagcaacac cttgtagctc
     5041 aatgccgtag ttcgcaaaaa tggttaaatc atatttaata ttctgcccga tctttttaat
     5101 ctccgggtta agcaaaatcg gcttgagttt acttaaacaa gcggtcaaat ttagctgatt
     5161 ttttaccaat tcatcggaag acgggctttc tgaacgctcc tcatcaccga acatatcggc
     5221 ttgttgcggt tgggcttttt gcttatgccc aagcggaata tagcacgcct cgccattttc
     5281 cagtgcaaag gaaataccga ccaaattagc cgacattgcg tcaaggctgt cggtttcggt
     5341 atccaccgca atcaaacgag ctgcggtgag tttttcgatc caggctgata atttctgttc
     5401 agtatcaacg gtctcatatt tgctacgatc gatctcgacc acatttgcaa cattttcctc
     5461 atttctgacc gcttgtgtta cttggtaatt attcggtact ttttcagccg aagtttgagt
     5521 gaccggattg gcattttgat tcacttcgtt cagccagcgt ttaaattcat aatgctcaaa
     5581 taattgagca agctcagcac ggtcttgcgg ctgtgttaaa agttgatcgt gagtaacatc
     5641 aagttccaca tcggttttga tggtagcaag caaataggat aaatcggcat tcgctttttc
     5701 cgcttccaat tttggggcga aattttttgc cccacggaaa gaaagggtgg caatttgatc
     5761 caaattagca taaatctgtt caagtgaacc aatgccttgc aataaagcta atgcggtctt
     5821 ttcccccaca ccttttacgc ccggaatgtt atcggcggaa tcgcccatta atgccagaaa
     5881 gtcgataatc aactcaggcg gaatgccata tttttcaatc acgccttcac gatctaacaa
     5941 agtattgttc atcgtgttaa tcaacataat gtgatcgttc accaattgtg ccatatcttt
     6001 atcgccggtg ctgatcaaca catctttgcc gtctttagcg gcttgcacag caagcgtgcc
     6061 gatcacatca tcagcttcca caccttcaat cgaaatcagt ggaatgccta aggctttgat
     6121 aatgcgatgc aaaggctcaa tttgagggcg taaatcatcg ggcattggtg ggcggtgcga
     6181 tttatattgc ttaaacaact catcacggaa ggttttccct ttggcatcaa acaccacagc
     6241 aatatggctt ggattcactt gtgaaatcag gctttttaac atattcagca cgccatacat
     6301 tgcccctgtc ggttcgccta agcgattagt gagcggaggg aaagcgtgaa atgctcgata
     6361 taaataggaa gaaccatcca ccaataccag tggatttttt gcgatagttg ccataaaaat
     6421 ctctttataa tcaaataaat attggcgtta ttatacaaga atatttaaga attgagtgtg
     6481 tat
//
LOCUS       DANMBQ010000128         6466 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.129, whole genome shotgun sequence.
ACCESSION   DANMBQ010000128 DANMBQ010000000
VERSION     DANMBQ010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6466
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.129"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            58..981
                     /gene="oppB"
                     /locus_tag="PXE92_002180"
     CDS             58..981
                     /gene="oppB"
                     /locus_tag="PXE92_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HDL5761383.1"
                     /translation="MLKFIFKRLLEAIPTLLILITFSFFLMRLAPGSPFTSEKAYPPK
                     VMANIEAKYHLNEPLYKQYFLYMENLSKGDFGPSFKYKDQSVNNLIASAFPVSIKLGI
                     TAFIFAVLIGLTAGTIAALKQNSKWDYLVMGFSMTGIIMPSFVFAPLLVLMFAIYLKW
                     LPAGGWNGGQLYYMVLPVLSLTISYVAGIARITRGSMIEVLHSNFIRTAKAKGLPMRK
                     IIFKHALRPALLPVITYLGPAFVGIITGSMVIESVFGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGTLTILFNAIVDILYAVIDPKIRYS"
     gene            996..1895
                     /gene="oppC"
                     /locus_tag="PXE92_002181"
     CDS             996..1895
                     /gene="oppC"
                     /locus_tag="PXE92_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HDL5761384.1"
                     /translation="MQNSSKNQPLVEVTSTIQGRSLWQDARRRFFRNKAAVASLIILC
                     CIILFITFAPMLMPFSYEDTDWNMMGIAPDFESQHYFGTDSSGRDLLVRVAIGGRISL
                     MVGIAGALIAVLIGTIYGAISGYFGGKVDMVMMRFLEILSSFPFMFFVILLVTFFGQN
                     IFLIFIAIGMVAWLNLARIVRGQTLSLKNKEFVEAAIVCGVSRRQIIWRHIVPNVLGL
                     VVVYASLEVPSLILFESFLSFLGLGTQEPMSSWGALLSDGAAQMETSPWLLAFPAFFL
                     CLTLFCFNFIGDGLRDALDPKDK"
     gene            1905..3500
                     /locus_tag="PXE92_002182"
     CDS             1905..3500
                     /locus_tag="PXE92_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5761385.1"
                     /translation="MELLAVNNLDVYLKTDEELVHAVRNVSFSIEKGQTLAIVGESGS
                     GKSVTSMAIMQLLPKNIVSFGERSSIIFEEQNLLTLSEKAMQTVRGDRIGMIFQEPMT
                     SLNPYMPIGKQVAETVQTHNPQISNAEAEKMVLETLQKVKIPDAEKKMICYPHEFSGG
                     QLQRIMIAMAIINKPDLLIADEPTTALDVTTQAEILDLMHDLQRDMGMAIILISHDLR
                     LVHKYSDLVCVMQNGEIIERGETETVFTNPQHPYTVELLTPIPTNLKGELPPNAPTLL
                     QGEHIKVDYILKRSLFGKPKKVFNALKDISLHLKTGETLGIVGESGSGKSTLGRAIMQ
                     ILDYRGNITFAGKTLANLNKAERQALKKDMQMVFQDPFNSLSPRLTVGEIIAEGLTVH
                     CPQMSKTERREKVMKMLEEVNLNPAMINRYPHEFSGGQRQRIAIARAIILEPKFVLLD
                     EPTSALDRSTQITVIELLNRLQKKYGLSYIFISHDLAVIKALSDRVIVMSQGEIVESG
                     DVTQIFENPQQEYTKRLILASNL"
     gene            3680..4075
                     /locus_tag="PXE92_002183"
     CDS             3680..4075
                     /locus_tag="PXE92_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5761386.1"
                     /translation="MKKLMIFATTAMIVSNLAHAAGEQSDAREAHESTVKTSTVKYSC
                     QNGKKLSVKYGFNKQGIPTYAEAKLSGKKRFMPINLYTTDATGTNFGDENNFSLYGDP
                     MEFTNHRKASVNIQSPASEILYKGCTPQK"
     gene            complement(4285..6444)
                     /locus_tag="PXE92_002184"
     CDS             complement(4285..6444)
                     /locus_tag="PXE92_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL5761387.1"
                     /translation="MQIKQTVLAIAITPFISQLSLAQETKISSIELDTIEVNEQQENL
                     LKQQAVMSNEDLVRYSTDMGVPQTGRFGPQGFNIRGVEGNQVAVTVDGISQAASNNYA
                     TFSRYSYYNKSRPEIDTELMSDVTIEKGSSTKVGNGALGGSVNYKTKTVSDILMKGRQ
                     FGGMLKYTYNGQNKENIETAGIAADGQYADALVMYSHRQGHETQTTSKGPDIMGSGRG
                     LPNPYKNNQYSYLAKLGLKWNDENRLELKTSKQRSKNAGQELSYSTVTLRDFLDVQEI
                     ETYGVTYLYTPKNSILENIKVAVTKQDTEISGINDQITIARGTKTDNTKRAFNTKNVE
                     GSLGVTFKPVDLGNTEHKLSTELGYGVSDFSFDMQTYTAGITPTDQNMQSPAKTKSFH
                     ILMGDSILLTQNLSAHLNARLSSQKLHSDDNSLSDKTFNNWAGDIGLNYQLSPVWQIG
                     YKLSRGFRTPTASEMFFNREVQGRGASQTFLANTNLKPETSLGNEISLVGNGSLGSLS
                     VAAYHTHYRNLIDLATIGNNIYQSQNVNRAKIKGVDINGTLDLNTAWNAIPQGFELNG
                     GFGYARGKRNDGTDLLTVQPLKALFGIGYRAVNNDWAIHLNGTYTQGKKAKYAQQYAI
                     LANTGYLSYDKSLTTYPYLSNSATVFDLVAHKKFGERAIVKVGVYNLFNKKYWTWDSL
                     RTIGITSPGVANSITGEGLNRYLAPERYVMASVEFKF"
BASE COUNT         1855 a         1283 c         1286 g         2042 t
ORIGIN      
        1 aagccgttaa tttacgctat taattgccta ccaatataac taaaaagagt ggtgcttatg
       61 ctgaagttta tttttaaacg tcttcttgag gcgattccaa ccctactaat tctgattacc
      121 ttttcctttt tcctgatgcg gcttgccccg ggtagcccat ttaccagtga gaaagcctat
      181 ccgccgaaag taatggcaaa tatcgaggca aaatatcacc tgaatgaacc gctgtataag
      241 cagtattttc tttatatgga aaatctgtca aaaggcgatt tcggtccatc ttttaaatat
      301 aaagatcaat cggtaaataa tctgattgct tctgcgtttc ctgtttcgat aaaactgggc
      361 attactgcct ttatttttgc ggtgcttatc ggtttaaccg caggaactat cgctgcactt
      421 aagcaaaata gtaaatggga ttatttagtg atgggctttt caatgacggg tattattatg
      481 ccgagctttg tctttgctcc gctgttggta ctcatgtttg cgatttatct caaatggttg
      541 cctgccggtg gttggaacgg tggtcagctc tactatatgg ttttacctgt tctctcttta
      601 accattagct atgttgccgg cattgcccgt attactcgtg gttcaatgat tgaggtgttg
      661 cactctaatt ttattcgcac cgctaaggca aaaggcttgc caatgcgtaa aattattttc
      721 aaacacgctt tgcgtccggc attgttgcct gtgatcactt atttaggccc ggcttttgtt
      781 ggcattatta ccggctcgat ggtaattgaa agcgtgtttg gcttaccggg aatcgggcag
      841 ttgttcgtaa acggagcatt aaatcgtgac tattcattag tattaagcct aaccattttg
      901 gtaggtacgc tcaccatttt atttaatgcg attgttgata ttttatatgc ggtcatcgac
      961 ccgaaaattc gttattcata ggagtaaagc ggaaaatgca aaattcttca aaaaatcaac
     1021 cgcttgttga ggttacctca accattcaag gacgaagttt atggcaagat gcacgccgcc
     1081 gttttttccg aaataaggcg gctgtggcaa gtttgattat tctttgttgt attattcttt
     1141 ttattacctt tgccccaatg ctaatgccgt ttagctatga agataccgat tggaatatga
     1201 tggggattgc tccggatttt gaatctcaac actatttcgg tactgattct tcagggcgtg
     1261 atttgctggt tcgagttgca atcggtggac gcatttcgtt aatggtaggg attgccggtg
     1321 cattaattgc ggtgcttatc ggtacaatct atggagcaat ttccggttat ttcggcggta
     1381 aagtcgatat ggtgatgatg cgttttctgg aaattttaag ctcattccca tttatgttct
     1441 tcgtaatttt gctggttacg ttcttcgggc agaatatttt cctgattttc attgcaatcg
     1501 gtatggtagc gtggctgaac cttgcccgta ttgtacgtgg tcaaactctt tcgcttaaaa
     1561 ataaagagtt tgtggaagca gcgattgtgt gtggcgtttc ccgccgtcaa attatttggc
     1621 gacacattgt gcctaacgtt ttaggcttag tggtggttta tgcctccctt gaagtaccat
     1681 ctctgatttt gtttgaatcg ttcttaagtt tcttagggct tggtacacaa gagccgatga
     1741 gcagttgggg ggcattatta agcgacggag cggcacaaat ggaaacctcg ccttggctac
     1801 tggctttccc tgcctttttc ttatgtttaa cactgttttg ttttaatttt attggtgatg
     1861 gcttgcgtga tgccctcgat ccaaaagata aatagaggtt tagaatggaa ttattagcag
     1921 taaataatct cgatgtttat ttaaaaacgg acgaagaatt agttcacgca gtgcgtaatg
     1981 tctcgttctc gattgaaaaa gggcaaaccc ttgcgattgt gggggaatcg ggttcgggta
     2041 aatccgttac ttcaatggca attatgcagt tattgcctaa aaatatcgtc tcattcggtg
     2101 aacgctcaag catcattttt gaagaacaaa acttgcttac tctatctgaa aaagcaatgc
     2161 aaacagttcg aggtgatcgc atcggtatga ttttccaaga gccaatgacc tcactcaatc
     2221 cttatatgcc gattggcaag caggttgctg agacggttca aacccataat ccgcaaatca
     2281 gcaatgccga agcggaaaaa atggtgttgg aaactttgca aaaagtaaaa attcccgatg
     2341 cggaaaagaa aatgatttgc tatccgcacg agttttccgg cggtcagcta caacgaatta
     2401 tgattgcaat ggcaattatc aacaaacccg atttattgat tgccgatgag ccgaccaccg
     2461 ccctggatgt cacaacccaa gcggaaattt tggatttaat gcacgactta cagcgtgata
     2521 tgggaatggc gattatctta atttcccacg atttacgctt ggtgcataaa tacagtgact
     2581 tagtctgcgt aatgcaaaac ggcgaaatta ttgagcgagg cgaaacggaa actgtgttca
     2641 ccaatccgca acatccttat acggtggagc tacttacccc gattccaact aatttaaaag
     2701 gggaattacc gccaaatgca ccaaccttgc ttcagggtga gcatattaag gtagattata
     2761 ttttaaaacg ctcgctattc ggtaagccga aaaaggtgtt taatgcgtta aaagatattt
     2821 cattgcactt gaaaaccggc gaaacgctcg gcattgtagg cgaatccggc tccgggaaat
     2881 ctacccttgg gcgtgccatt atgcagattt tagattatcg cggcaatatt acatttgcag
     2941 gtaagacact ggctaatctg aataaagccg aacgtcaagc cctgaaaaaa gatatgcaaa
     3001 tggtgttcca agacccgttc aactcacttt ctcctcgctt aacagttggg gaaattattg
     3061 ctgagggctt aaccgtacat tgccctcaaa tgagcaaaac cgaacggcgg gaaaaagtaa
     3121 tgaaaatgtt ggaagaggtt aatctcaacc ctgcaatgat taaccgctat ccgcacgaat
     3181 tttcgggcgg acaacgccag cggattgcga ttgcaagggc aatcatttta gagccgaaat
     3241 ttgtattgct tgatgagcca acctcagcac ttgaccgctc tactcagatc actgtaattg
     3301 aattgcttaa ccgcttacag aaaaaatacg gcttaagtta tattttcatc agccacgatt
     3361 tggcggtcat caaggcactt agcgaccgag tgattgtaat gagccaaggt gagattgtag
     3421 aaagcggtga tgtcactcaa atttttgaaa atccacaaca agaatacacc aagcggttga
     3481 ttttagcctc taatttgtaa ccccttccac aaggtcttat tctaccaaaa aacaagacct
     3541 tgtcatttta tgctagcaaa acattgtaat tttgatattt tatttcaatt ttttgaaaaa
     3601 atatggaact ttatataaaa ctcactttct aaacaatacg ttatctgaac taagataacg
     3661 cttatttaaa ggaaaatata tgaaaaaatt gatgatattc gcaacaactg ccatgattgt
     3721 aagcaattta gcccatgcag caggtgaaca aagtgatgca agagaagccc acgaaagcac
     3781 cgtaaaaacc tcaactgtta agtatagctg ccaaaacggc aaaaaattaa gcgtgaaata
     3841 cggcttcaat aaacaaggca ttccaaccta tgctgaggca aaattaagcg gtaaaaaacg
     3901 ttttatgccg atcaacctat acacgacaga tgcaaccggc actaactttg gtgacgaaaa
     3961 caatttcagc ctttacggtg atccaatgga atttaccaac caccgtaaag catcagtaaa
     4021 tatccaaagc cccgcaagtg aaattttata taaaggttgc acacctcaaa aatagataaa
     4081 aagtaaaatg agtccgctct gataagtggc tttttaatag ctgtttattg cagataggaa
     4141 agcattttgt ttttatctac tatccagaaa caagcggtta aatttgttta attttttaca
     4201 aaaaatgggc caaaattaac cgcttgttta ttactataaa gaaataagta cgtaaaaatt
     4261 aactcttaca tttaatgctt atctctaaaa tttaaactcc actgatgcca ttacatagcg
     4321 ctctggagca aggtaacgat ttaagccttc gccagttata ctgttggcaa ctccaggact
     4381 agttatacca atagttctta aactatccca agtccaatat tttttattaa agagattata
     4441 aaccccaact ttaacaatcg ctctttctcc aaactttttg tgtgcaacta agtcaaatac
     4501 ggtggctgaa ttacttaagt atgggtaagt ggttaatgat ttatcgtaac ttaaataccc
     4561 agtattggct aaaatagcat actgttgtgc atattttgct tttttgcctt gtgtgtatgt
     4621 gccgtttagg tgtatcgccc agtcattgtt cacagctcga taacctatgc cgaacaatgc
     4681 ttttaacggt tgaaccgtga gtaagtcggt accatcatta cgtttgccac gagcataacc
     4741 aaatccacca ttaagctcaa agccttgtgg aattgcattc cacgctgtgt ttaagtctaa
     4801 agttccgtta atatcaacac ctttgatttt agctcggtta acattttgcg attggtaaat
     4861 attgttacca atagtggcaa gatcaatcag atttctatag tgggtatggt aagcggctac
     4921 gctcaagcta cctaatgaac cattacctac cagtgaaatt tcattaccta agcttgtttc
     4981 cggttttaag ttagtatttg ctaagaaagt ttggcttgct ccacgccctt gaacttcacg
     5041 gttaaagaac atttcacttg cggtaggtgt tctaaaacca cggctgagtt tatagccaat
     5101 ttgccataca ggagagagct gataatttaa accaatatct cccgcccaat tgttaaaggt
     5161 tttatctgac aaactattat catcagaatg taatttctga ctgctcaatc gagcatttaa
     5221 atgagcagat agattttgtg tcagtaaaat agagtctccc atcaaaatat ggaaagactt
     5281 ggtttttgcc ggagactgca tattttgatc ggttggcgta atacctgctg tataggtttg
     5341 catatcaaaa ctgaaatcag atacaccata gcctaattcc gttgacaatt tatgttcggt
     5401 attacctaga tcaacaggct tgaatgtaac acctaagcta ccttcaacat ttttagtatt
     5461 aaaagcccgt ttggtattat ctgtttttgt accacgggca atagtgattt gatcgttaat
     5521 acctgaaatt tcagtatcct gtttggttac cgcaacttta atattttcaa gaatactgtt
     5581 ttttggagtg tataaataag taacgccata agtttcaatt tcctgcacat ccaaaaaatc
     5641 acgtaatgtg acggtagaat aagaaagctc ttgaccggcg tttttactgc gttgcttaga
     5701 agtttttaat tcaaggcgat tttcatcatt ccattttagc cctaattttg ccaagtagct
     5761 gtattgatta tttttgtaag gatttggtaa accacgacca cttcccataa tatccggacc
     5821 tttagacgtt gtttgtgttt cgtgtccttg acggtggcta tacataacca aagcatccgc
     5881 atattgacca tccgcagcaa tacctgccgt ctcaatattc tctttatttt gaccgttata
     5941 ggtatatttc aacatcccac caaattggcg acctttcatt aaaatatcac ttacggtttt
     6001 agttttatag ttcacagagc cgcctaatgc cccattgcct acttttgtgc ttgagccttt
     6061 ttcaatggtt acatcgctca ttaattcagt atcgatttca gggcgagatt tattgtagta
     6121 actatagcga ctaaaggtgg catagttatt tgatgctgct tgcgatatgc catcaactgt
     6181 tactgccact tgattacctt caacaccacg gatattaaac ccttgtgggc caaagcggcc
     6241 tgtttgcgga acgcccatat cagtactata acgtactaaa tcttcattgc tcatcaccgc
     6301 ttgctgttta agtaggttct cctgctgctc atttacttca atagtatcta gttcaatgct
     6361 actaatcttt gtttcttgag ctaaggagag ttgagaaata aagggagtaa tcgctattgc
     6421 taatacagtt tgctttattt gcatatttta gatcctctag ttagtt
//
LOCUS       DANMBQ010000129         6462 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.130, whole genome shotgun sequence.
ACCESSION   DANMBQ010000129 DANMBQ010000000
VERSION     DANMBQ010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6462)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6462)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6462
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.130"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..707)
                     /locus_tag="PXE92_002185"
     CDS             complement(<1..707)
                     /locus_tag="PXE92_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5761388.1"
                     /translation="MSIYRRKANGPWWVDITTPNGKRIKRSTRTLVKREAQQYHDKLK
                     QEMWAEDKLEEKRKYIFEDALLHYVRAAEELKDKATKKRHAEYWLSKFAGRELSSLTA
                     QEIILNIPKKNANTKKPLSHSTQNKYVKSLSRVLNIAHKLGMLDAVPHIPKKKEPPIR
                     VRWITKEQAKQLIDKLSSDWMKSICKFALMTGARRTEILTMTWDKIDLVRKVAIVTND
                     VAKSGKARSLLLNQEAI"
     gene            complement(611..934)
                     /locus_tag="PXE92_002186"
     CDS             complement(611..934)
                     /locus_tag="PXE92_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5761389.1"
                     /translation="MEHLTINQVAKELNCHPNTVRQHLADWGFFKMVGSEVWRINRED
                     LERAKKRAGIDPIRKRSDNDRGLSLSVEENEKCRSTDEKQTVRGGLISQPQTARELRE
                     ALARL"
     gene            complement(1015..1182)
                     /locus_tag="PXE92_002187"
     CDS             complement(1015..1182)
                     /locus_tag="PXE92_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HDL5761390.1"
                     /translation="MQFTYGSICSGIEATSIAWHGLGKPLWFSEIEPFPCAVLAHRFP
                     NVPNGNGMAVP"
     gene            complement(1190..1564)
                     /locus_tag="PXE92_002188"
     CDS             complement(1190..1564)
                     /locus_tag="PXE92_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761391.1"
                     /translation="MHIEDKIAWWLANGETGVSSKTMAFYLGYGIRPKIEGYPHDVSD
                     FRRCFLLLETVPFLRNRIEKMAELGKVWAALAKEWHTLEALYNEEECQIRCPKTYAKL
                     REILEANEENVVRIGNLSISIG"
     gene            1714..1941
                     /locus_tag="PXE92_002189"
                     /pseudo
     CDS             1714..1941
                     /locus_tag="PXE92_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609911.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
     gene            1966..2361
                     /locus_tag="PXE92_002190"
     CDS             1966..2361
                     /locus_tag="PXE92_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761392.1"
                     /translation="MKIHTQIRKEILSLLEAKLTDIEHFYNGQPNFIDIDEQQLAISV
                     YLDEINRQELTLCDEQWTAQLNITIYLKSVDEAEDELDEWAEKIREVVETYSAFEHLE
                     GISLSQYQYEQDQNQRTWHSATLIFDVEY"
     gene            2393..3034
                     /locus_tag="PXE92_002191"
     CDS             2393..3034
                     /locus_tag="PXE92_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761393.1"
                     /translation="MAKTTKVQGTKFRIGIGREAQKAITAITLATATLTIATSGYKKG
                     DAIEITGCGQLDGIYPVLSVTGDQVKLCEEVNWTGKDLPANYTKAKAALVQYSDQFCA
                     VKNIEKSDDTLSTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPSTEMQTRLRKLFYD
                     KSTFAYKLELPDNHGTTYGEGFIEAGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            3117..3518
                     /locus_tag="PXE92_002192"
     CDS             3117..3518
                     /locus_tag="PXE92_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761394.1"
                     /translation="MTLREKLLANKPKLQSIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGALLFNPLNIDDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSK"
     gene            3563..3793
                     /locus_tag="PXE92_002193"
     CDS             3563..3793
                     /locus_tag="PXE92_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL5761395.1"
                     /translation="MPERHFAEYQLFYQEQPFGLWREDYRAAQLAHLTAMINRDPKGK
                     APELSEFMPFFNRADEVEANEDDGVADYLAKR"
     gene            3861..4127
                     /locus_tag="PXE92_002194"
     CDS             3861..4127
                     /locus_tag="PXE92_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL5761396.1"
                     /translation="MATINDAFSFRTNTEIKNTAFDVIKNYGMTPSQVFNMFLTEIAK
                     TKTIPLSLNYQPNLETKLAMQEAKSGKNEVYASLEAFHKAMLAE"
     gene            4131..4400
                     /locus_tag="PXE92_002195"
     CDS             4131..4400
                     /locus_tag="PXE92_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL5761397.1"
                     /translation="MLQISPTNAYKRDFKKIAAELVGSSEYVEVMYCLINQLPLAEKY
                     RDHPLQGEWQGFRDCHIKPDLVLIYAVEDNLLRLVRLGSHAELFG"
     gene            4475..4738
                     /locus_tag="PXE92_002196"
     CDS             4475..4738
                     /locus_tag="PXE92_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761398.1"
                     /translation="MKNVLLFIVHFFLIAMLSIIPILIILGAIERDPYYTAWIFLSVF
                     LGIGALLYFATIVSKLINKGKTQTLEEKRYAEYWNNVKVNIPK"
     gene            4798..5508
                     /locus_tag="PXE92_002197"
     CDS             4798..5508
                     /locus_tag="PXE92_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL5761399.1"
                     /translation="MSGLGKLTVTLELENAKFQSAMTKSDYEAQKFAKNFIQNMDRAR
                     NHAKEFADRSTQYLKNIEQAAKNLNKNSEFSFLSTIGGHYQSMSSGILSAAKAYTDIQ
                     NKMKLVSGSSAEAAKRLTDVFDIATKTSQSTEAVSGVYQTFAQNAQSLGLAQKDVAEL
                     TKTVSQAVAASGASSSAASNALTQFGQSLLMGKMKAQEFNSLITQTPTIIQAMAKGLG
                     MTMAEFKAAVYRAKSLLG"
     gene            5486..5776
                     /locus_tag="PXE92_002198"
                     /pseudo
     CDS             5486..5776
                     /locus_tag="PXE92_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484718.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
     gene            5766..>6462
                     /locus_tag="PXE92_002199"
     CDS             5766..>6462
                     /locus_tag="PXE92_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL5761400.1"
                     /translation="MKFSKYQLLVNKICFICGKKDCPQMKKSKDYKDFLDALEKGDVD
                     KADKIYNTKFSQFSKSFGHEMEKNLEKNRIPPIYQGVPFDSFDLYQHYSYGNGEALNL
                     SSVGLSNKIRPLVNKDKAFGKSNGSIESRFISQYKNEGRTSFSNAYDFTKEASGIADP
                     LWALGTATISGELKDIQIFPGGIARGNIHYSIRDRFTDPFDTFNFTKGEWNPNGTPYI
                     IQDSWIKSVRFSID"
BASE COUNT         2052 a         1276 c         1248 g         1886 t
ORIGIN      
        1 ttaattgcct cttgattcag taatagcgat cgtgccttac ctgatttagc gacatcatta
       61 gtcacgattg ctacctttct tacaagatct atcttatccc aagtcattgt caaaatttct
      121 gtccgtctgg ctccagtcat caaagcaaac ttacagatag atttcatcca gtctgaactt
      181 aatttatcta ttagctgttt tgcttgttct ttggtgatcc agcgtacacg aattggcggc
      241 tctttctttt tcggtatgtg tgggactgca tccaacatac caagtttatg agcgatattt
      301 aatactctcg ataaagattt cacatactta ttttgcgtac tatgagatag aggctttttc
      361 gtatttgcat tctttttcgg gatatttagg ataatctcct gagctgttaa agagctgagt
      421 tcacgaccgg caaatttgga taaccagtat tcagcatgtc gcttttttgt ggctttatct
      481 tttaattctt cggccgcacg aacgtaatgg agcaaagcat cttcaaagat atattttctc
      541 ttttcctcga gtttatcctc tgcccacatt tcttgcttga gtttatcgtg atactgctga
      601 gcttcacgtt ttacaagcgt gcgagtgctt ctcttaattc tcttgccgtt tggggttgtg
      661 atatcaaccc accacggacc gtttgctttt cgtctgtaga tcgacatttt tcattctcct
      721 cgaccgacag agataaccct cggtcattat cagatcgttt tcttattggg tcaataccgg
      781 ctctcttttt tgctctttcc aaatcttctc ggttgatccg ccaaacttcc gagcctacca
      841 ttttaaaaaa tccccaatcc gccaaatgtt ggcggactgt atttggatgg caatttaatt
      901 cttttgccac ttgattaata gtaagatgtt ccattcatta ctttctccaa aataaatccc
      961 tctaaacgag ggattgtact aaataatcgt taagtctttg ccttatccac tgcatcaagg
     1021 cacagccata ccgtttccat ttggcacatt ggggaaacgg tgagctaata ccgcacaggg
     1081 gaatggctca atttcagaga accacaaagg cttacctaaa ccgtgccacg ctatacttgt
     1141 agcttcgata ccgctacaaa ttgagccgta ggtgaattgc attttttacc tatcctatcg
     1201 aaatactcaa attcccaata cggacaacat tttcttcgtt ggcttctagg atttctctca
     1261 acttagcata ggttttgggg catcttattt gacattcctc ttcgttgtag agagcctcta
     1321 atgtgtgcca ttcttttgca agtgcagccc aaactttccc aagttcagcc attttttcaa
     1381 tcctatttcg caaaaaaggg actgtctcca acaacagaaa gcaacgcctg aaatccgata
     1441 catcgtgtgg gtagccttct atttttggtc ttattccgta accaaggtaa aaagccattg
     1501 ttttactgct tacccctgtc tctccattgg caagccacca agcgattttg tcttctatgt
     1561 gcatttttcc tccaaaaatt aaccgcttgc ggaacaagtt ctacaagcgg ttgtcaagtg
     1621 ttcatttgtt caatgaacag ttcattgtga ataacaaaac cgcttgaatt acaagcggtc
     1681 tattttgttg cgtaaattta ctgttagcgt tgagccataa ccgactacga ccgctggccc
     1741 gaagatattg acggcgaggg ggacggcttc tcgcttgcct ccaaacggac gaccactttt
     1801 atgtcagccg gaatgacttt agtggagagt tcgcctggta aagatattgt cgatctcaaa
     1861 catatcccga aaagtagcca cgaagcccca ccgactaccg gtattttaag cctctacaat
     1921 cgaggcgacc gcagacgctt tagcgaaaca gttgataggt aagctatgaa aatccatacc
     1981 caaatccgaa aagaaatcct ttcattatta gaggcaaaat taacggacat cgagcatttt
     2041 tataacgggc aaccgaattt cattgatatt gacgaacagc aacttgccat ctctgtttat
     2101 cttgatgaga ttaaccgtca ggagcttacc ttatgcgatg aacagtggac agctcaactt
     2161 aacatcacga tttatctaaa atcagttgat gaggcagaag atgaattaga tgagtgggcc
     2221 gaaaaaatcc gtgaagtggt tgaaacatat tctgcgtttg aacatttaga gggcatcagc
     2281 ctttctcaat atcaatacga acaagatcaa aatcaaagaa cttggcactc agccacattg
     2341 atttttgatg ttgaatacta acaagcaaat aatccttata ggagaatcta caatggcaaa
     2401 aacaacaaaa gtccaaggca caaaatttag aattggcatt ggacgtgaag cccaaaaggc
     2461 aattacggct atcactttag ctacagcaac gcttactatt gccacatcag gctataaaaa
     2521 aggcgatgca atcgaaatta ccggttgtgg tcagttagac ggcatttatc ctgtattatc
     2581 tgtaacaggc gatcaagtca aattgtgcga agaagtaaac tggacgggta aagatttacc
     2641 ggctaattac accaaagcca aagcagcttt agtacaatac tcagaccaat tctgtgcggt
     2701 aaaaaacatt gaaaaatctg atgatacgtt aagtaccgaa gatgttacaa cggtctgctc
     2761 ggaaggtaca gaaaccgaac ccggagaaat tgaatttggc tcaattaaac tgagcttttt
     2821 tcacaagcca agtacggaaa tgcaaactcg cttacgcaaa ttgttttatg acaaatccac
     2881 ctttgcgtac aaattagaat tacctgataa ccacggcaca acctatggcg aaggtttcat
     2941 tgaggcgggt aacggcttta gtggcgaagt taaaggcaaa tatgaaggct cggtatcaat
     3001 taaaccaagc aaacgtgatt atttgctagt gtaattacaa aatattgctc caaatcgacc
     3061 gcttgtaata ttgcaagcgg tcttttttat cctaaatttt acaaaaggaa tcgacaatga
     3121 cactccgtga aaaactcctc gccaacaaac caaaattaca atctatcgaa atcaacggtg
     3181 agacctacta cctgcgtgaa gccactgttg gcgatatgaa taagcagatt tttgaaaccc
     3241 gaagctggct cattcaacaa gctgaacaag aaaatgttga attaccggca gaagatgatg
     3301 aaacctttga cgaagctctc aaccgttttg gcgaaaaata ccgccttgct caatcggttg
     3361 cctaccgttt atgtgacgaa aacggtgcat tactgtttaa cccacttaac attgacgatc
     3421 tcaatgcgat tgccgaatta gacagtaaag tgattatcga ctttaaccaa gccgtgtccg
     3481 ccccaaaaga ctcagcgagc gaagaaagtt ccaaataacc ctttcgctcg cactgggtaa
     3541 aacccttgaa gaaatcgaac aaatgcctga acgccacttt gccgaatatc agctttttta
     3601 tcaagagcaa ccttttgggc tttggcgtga ggactatcgt gctgctcaac ttgcccactt
     3661 aaccgcaatg atcaaccgtg acccaaaagg caaagcccct gaactctcgg aatttatgcc
     3721 gttttttaat cgggctgatg aagtagaagc aaatgaagat gatggcgttg cggattattt
     3781 ggcgaaaagg taaatctctt gtatttcatt gtaattctgt ctataattgg tgtaatacat
     3841 agaaatacag gagagataaa atggcgacta tcaatgatgc tttcagtttt agaacaaata
     3901 ccgaaataaa aaataccgca tttgatgtaa ttaaaaacta tggaatgaca ccctctcagg
     3961 tgtttaatat gtttttaacc gagattgcaa aaacgaaaac tattccgtta agtttgaatt
     4021 atcaacccaa tcttgaaaca aaattggcaa tgcaagaagc aaaatcaggt aaaaatgaag
     4081 tttatgcctc acttgaagca tttcataaag caatgttagc ggagtaaata atgctacaaa
     4141 tttcgccgac aaacgcatat aaaagagact ttaaaaagat tgcagccgaa ttagtcggta
     4201 gttcggaata tgtggaagta atgtattgcc taataaacca attaccattg gcggaaaaat
     4261 atagagatca cccactacaa ggtgaatggc aaggctttag agattgccat attaagcctg
     4321 atttagtgtt gatttacgct gttgaagata atctgctccg ccttgttcgt ttaggatcgc
     4381 acgctgaatt atttggataa tttctgtaaa aactaaccgc ttgcgatttt gtgctgtggg
     4441 cggtatagtt ggaatattaa caaaggaggg aaaaatgaaa aatgtacttc tatttatcgt
     4501 acactttttc ttaatcgcaa tgctctcaat tatcccaata ttaattattc ttggagcaat
     4561 cgaaagagat ccttactata ctgcgtggat tttccttagc gtatttttag gcattggagc
     4621 attgttatat tttgcaacca ttgtttctaa gttaattaac aagggaaaaa cacaaacatt
     4681 agaagaaaaa cgatatgcag aatattggaa taatgtaaaa gtcaatattc ccaaatagtc
     4741 taactgataa atgaccaaaa gctcgcttta tgcgggcttt tttattggag aaaaacaatg
     4801 agtggcttag gaaaattaac cgttacctta gagcttgaaa atgcaaaatt tcagtccgca
     4861 atgacgaaat ctgattatga ggcacaaaaa tttgccaaga actttatcca aaatatggat
     4921 agagctagaa atcacgccaa agaatttgcc gatcgctcaa cccaatattt aaaaaacatt
     4981 gagcaagcgg caaagaacct caataaaaat tctgaatttt catttttatc gactattggt
     5041 ggacattatc aatcaatgtc tagtggcata ttgagtgcgg caaaagccta tactgatatt
     5101 caaaataaaa tgaaattagt aagcggtagt tcagcagagg cagctaaacg attaactgat
     5161 gtgtttgata ttgcgactaa aacaagccaa agtacagagg ctgtttcagg tgtctatcaa
     5221 acatttgctc aaaatgccca atctctcgga ctggctcaaa aagatgtagc agaattaact
     5281 aaaacggtct ctcaagccgt tgctgcaagc ggcgcaagca gttctgcagc aagtaatgcc
     5341 ctaacccaat ttggtcaatc acttttaatg ggcaaaatga aagcccaaga atttaactcg
     5401 ctcattactc aaaccccaac cattattcaa gcaatggcaa aaggtttggg aatgacaatg
     5461 gcagaattta aagcagcggt ataccgggca aaatctttac ttggataaca ttcaagggca
     5521 aggttttgag agagtggata caccccaaat cggcgatgtg attttaatac aggtcggttc
     5581 tgatgtgccg aatcacgcag cgatttatat tggtgaacaa atggtaatcc accatagccc
     5641 gaaccgatta tctaagcgtg atttatatga cggttattgg ttacgccata cccacagtat
     5701 ttggcggcat aaactggcgg atagattgga ttttgacggc atatttaatg atataggaga
     5761 acaatatgaa atttagtaaa tatcaattat tagttaataa gatctgcttt atttgtggta
     5821 aaaaagattg tccacaaatg aaaaagagta aagactacaa agactttttg gatgctttag
     5881 aaaaagggga tgttgataaa gcagataaaa tatacaatac gaagttttca cagttttcta
     5941 aatcttttgg tcatgaaatg gaaaagaatt tagagaaaaa tcgtatacct cctatttatc
     6001 agggagttcc atttgattct tttgacttat atcagcatta ttcttatggt aatggagagg
     6061 cattaaatct ttcatccgtt ggattaagta ataaaattcg tcctctagtg aataaagata
     6121 aagcatttgg taaatccaat ggaagtatag aaagccgatt tatttcgcaa tataaaaatg
     6181 aaggacgcac atctttctcc aatgcttatg attttacaaa agaagcatcg ggtattgcag
     6241 atccgttatg ggcgttagga acagctacca ttagtggaga attgaaagat atacaaattt
     6301 ttcccggtgg tattgctagg ggaaatatcc attatagtat cagggacaga ttcactgacc
     6361 catttgatac attcaatttt actaaaggag aatggaaccc aaatggaaca ccttatatta
     6421 ttcaagatag ctggataaaa tcggtacgat tttcgataga ca
//
LOCUS       DANMBQ010000130         6424 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.131, whole genome shotgun sequence.
ACCESSION   DANMBQ010000130 DANMBQ010000000
VERSION     DANMBQ010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6424
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.131"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(168..1454)
                     /gene="purD"
                     /locus_tag="PXE92_002200"
     CDS             complement(168..1454)
                     /gene="purD"
                     /locus_tag="PXE92_002200"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDL5761401.1"
                     /translation="MNILIIGNGGREHALAWKVRQSPLADKVFVAPGNAGTAMENGIE
                     NVAISATDVPALVTFAKQNSVGLTIVGPEAPLVVGVVDAFRAHGLTIFGPTQAAAQLE
                     GSKAFTKDFLARHQIPTAEYQNFTEIEPALAYLKQKGAPIVIKADGLAAGKGVIVAMT
                     LQEAEDAVRDMLSGNAFGEAGSRVVIEEFLDGEEASFIVMVDGKNVEPMATSQDHKRV
                     GEGDSGLNTGGMGAYSPAPVVTKAIHQRVMDEIIYPTVQGMASENTPYTGFLYAGLMI
                     MPNGQPKVIEFNCRFGDPETQPIMMRLESDLVELCLKACEGKLDSVQSKWCEQAALGI
                     VLAAAGYPGDYRKGDEIIGIPTSTSNQKVFLAGVEQKEGKLLTNGGRVLCATALGNSV
                     FEAQQQALQLAEQIQWQGKFYRRDIGYRAVARKQAK"
     gene            1688..2062
                     /gene="rpsF"
                     /locus_tag="PXE92_002201"
     CDS             1688..2062
                     /gene="rpsF"
                     /locus_tag="PXE92_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDL5761402.1"
                     /translation="MRHYEIVFMVHPDQSEQVPAMIERYTASVKEAGGQVHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQSVIDELETNFRYNDAVLRNLIVHTKAAVTEASPM
                     VKAKESKVAEAVAEVESEEAGE"
     gene            2037..2411
                     /gene="priB"
                     /locus_tag="PXE92_002202"
     CDS             2037..2411
                     /gene="priB"
                     /locus_tag="PXE92_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HDL5761403.1"
                     /translation="MNQRKQASNLPIDNCLILSGTVSSLVKQSLNPLGVPHYSFWLEH
                     RSIQTEVNLERQAWCKIQVVLAGNQFSYLTQQIKLGESVRIKGFIHTHKDFNGLNQLV
                     LHTEQIEFIDQEKPNGTLFPSS"
     gene            2386..2613
                     /gene="rpsR"
                     /locus_tag="PXE92_002203"
     CDS             2386..2613
                     /gene="rpsR"
                     /locus_tag="PXE92_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDL5761404.1"
                     /translation="MARYFRRRKFCRFTAENVVEIDYKDIATLKNYISESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLALLPYTDNHQ"
     gene            2629..3078
                     /gene="rplI"
                     /locus_tag="PXE92_002204"
     CDS             2629..3078
                     /gene="rplI"
                     /locus_tag="PXE92_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDL5761405.1"
                     /translation="MQVILLDKVAHLGSVGDQVTVKSGFARNFLIPQGKAVMATAANI
                     AHFEARRAELEAKAAAALATAQERAAKIAALAAVSVSATAGDDGRLFGSVSAKDIAEA
                     LTAAGVGVAKSEVRLGEGPLRTTGEHQVKIHLHPEVNATVAVNVVAE"
     gene            complement(3142..3918)
                     /gene="dnaQ"
                     /locus_tag="PXE92_002205"
     CDS             complement(3142..3918)
                     /gene="dnaQ"
                     /locus_tag="PXE92_002205"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HDL5761406.1"
                     /translation="MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRR
                     LTGRTYHVYIKPPREVDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFIKGAELIIHNA
                     PFDVAFMDQEFSYLPNPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSK
                     RVLHGALLDAEILADVFLMMTGGQISLLGEEETEVVSEVIDIEEEFSAIVLNADEAII
                     LKANDEEEESHLALLKLIEKKSKGNCLWTKALTDTAEISH"
     gene            complement(4006..5676)
                     /gene="ettA"
                     /locus_tag="PXE92_002206"
     CDS             complement(4006..5676)
                     /gene="ettA"
                     /locus_tag="PXE92_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HDL5761407.1"
                     /translation="MSTQFVYTMHRVGKVVPPKRHILKDISLSFFPGAKIGVLGLNGA
                     GKSTLLRIMAGVDKEFEGEARPQPGIKIGYLPQEPKLAPQQTVREAVEEAVAEVKNAL
                     TQLDEVYAMYADENADFDKLAAKQAELEAIIQAHDGHNLQNQLERAADALRLPDWDAK
                     IEHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITH
                     DRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKEKRLAQEQAAESARQKSIEKELEW
                     VRQNPKGRQAKSKARMARFEELNSGEYQKRNETNELFIPPGPRLGDKVIEVQNLTKSY
                     GDRTLIDDLSFAIPKGAIVGIIGANGAGKSTLFRMLSGKEQPDSGSIVLGETVVMASV
                     DQFRDAMDDKKTVWEEVSNGQDILTIGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGE
                     RGRLHLAKLLQRGGNVLLLDEPTNDLDVETLRALENAILEFPGCAMVISHDRWFLDRI
                     ATHILDYGDEGKVTFYEGNFSDYEEWKKKTFGEAATQPHRVKYKRIAK"
     gene            5882..6361
                     /locus_tag="PXE92_002207"
     CDS             5882..6361
                     /locus_tag="PXE92_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761408.1"
                     /translation="MYVQKHSNYSTALLVVIREKINSLPHQGLILDLISISKDDLDDI
                     LEGNTDMNIHQLLSLIYKAGFFDVLNITNNLCIKLSQFGFYFQNGNLSQKDDELLSLY
                     REFYKHNEFITHLKSHSLYGCIEQPTSAFFHYCTNENFRNAFNEESLYDFQMWNVFR"
BASE COUNT         1724 a         1441 c         1341 g         1918 t
ORIGIN      
        1 tgacagtttt ttccacatat agggcacgca gagtcattta gaaaagagtt tactgcatcg
       61 tttaatgata gtgatttaat ttcggggcct gcatcgagtt cagtgatatt aatttcatta
      121 agtgttgtac tcataataaa tttttccttg ttttaagagt ttataaatta tttcgcttgt
      181 tttcttgcca ctgctcggta gccaatatct cggcgataga atttgccttg ccattgaatt
      241 tgttcggcaa gttgtaaggc ttgttgttga gcttcaaata cactgttgcc aagtgcggtg
      301 gcacaaagta cacgtccacc gttggtgagc agttttcctt ctttttgctc aacccctgct
      361 aagaaaactt tttgattgga ggtagaggtc ggaatgccta tgatttcatc gcctttacgg
      421 taatcgcccg ggtagcctgc ggcagctaaa acaatgccta atgcggcttg ttcacaccat
      481 tttgattgca cgctatccaa tttgccttcg cacgctttta agcacaattc aacgaggtct
      541 gattccaaac gcatcataat cggctgagtt tcagggtctc caaaacggca gttaaattca
      601 atcactttcg gctgaccgtt tggcataatc attaagccgg catagagaaa accggtgtaa
      661 ggggtatttt cgcttgccat tccttgcacg gtcgggtaaa taatttcgtc cattacacgt
      721 tggtggattg cctttgttac caccggagca ggggagtaag cccccattcc gccggtattt
      781 aagccgctat cgccctcgcc aacacgtttg tggtcttgtg aggttgccat tggttcgaca
      841 tttttgccgt ccaccatcac aataaaactg gcctcttctc cgtctaaaaa ttcctcgatc
      901 accacacggc tgccggcttc accaaaggcg ttgcctgaca gcatatcacg cactgcatct
      961 tccgcctctt gtaaagtcat tgcaacaatt acgcctttgc ctgcggctaa accgtctgct
     1021 ttgattacaa tcggtgcacc tttttgtttt aagtaggcaa gtgccggttc aatttcggtg
     1081 aaattttggt attctgcggt tggaatctga tggcgagcca agaaatcttt ggtaaatgct
     1141 ttagaacctt ctaattgagc agcggcttgg gtcgggccga aaatggttaa accgtgggct
     1201 cgaaaagcat caaccacgcc aactactaac ggtgcttcag ggccgacaat cgtcaaacct
     1261 acgctatttt gtttagcgaa tgtaactaag gcaggcacgt cagtggcgga aatagctaca
     1321 ttttcaatgc cgttttccat cgctgtgccg gcattgccgg gggcgacaaa gactttgtct
     1381 gcgagcggcg attgacgaac tttccaagca agagcgtgtt cacgcccacc gttgccgata
     1441 attaaaatat tcattgggat tccttgcaaa aatgataaag caaacgtttg cgtattgtac
     1501 ttgatttgtt tatctgctga caagcagtcg tttttctcgg attttttgca aaatacgaaa
     1561 ttgttgcttg caaaataggc ttttttcagt ataatcctgc cgttcagtca cattcgtttt
     1621 ttaatccttg cttccacaag ttggtgactg gctaaagttg gaggctgcta acccgtaagg
     1681 atagtcaatg cgtcactacg aaatcgtttt tatggttcac ccggaccaaa gcgaacaagt
     1741 accagcaatg attgagcgct acacagcgtc tgtaaaagaa gctggcggtc aagttcatcg
     1801 cttagaagat tggggtcgtc gtcaattagc atacccaatc aacaaacttc acaaagcaca
     1861 ctatgtgtta atgaatgtag aagcacctca aagtgtaatc gacgagttag aaactaactt
     1921 ccgttataac gatgcagttc ttcgtaactt aatcgttcac actaaagcgg cagtaactga
     1981 agcgtcacca atggtgaaag cgaaagaaag caaagttgct gaagcggtag ctgaagttga
     2041 atcagaggaa gcaggcgagt aatttgccga ttgataattg tttaatctta agcggaacgg
     2101 tttccagctt ggttaaacaa agcctaaacc cccttggtgt gcctcattac agtttttggt
     2161 tagaacatcg ttcaatccaa accgaagtga atttagaacg ccaagcgtgg tgcaaaatcc
     2221 aagtggtttt ggcaggcaat caatttagtt atttaaccca acaaattaag ctcggtgaga
     2281 gcgtgagaat taaaggtttt atccatactc acaaagactt taacggttta aatcagttag
     2341 tcttacacac cgaacaaatt gaatttatag atcaggagaa gccaaatggc acgttatttc
     2401 cgtcgtcgta agttctgccg tttcacagcg gaaaatgttg ttgaaatcga ttacaaagat
     2461 atcgctacat taaagaacta catttctgaa agcggcaaga ttgttcctag ccgtattact
     2521 ggtactcgtg cgaagtatca acgtcaatta gctcgtgcaa ttaaacgcgc tcgctacctt
     2581 gcgttacttc catatactga taaccaccaa taatcaggag agagtacaat gcaagttatt
     2641 ttattagaca aagttgctca cttaggttct gtgggcgacc aagtaaccgt taaatctggt
     2701 tttgctcgta acttcttaat cccacaaggt aaagcggtta tggcaactgc ggcaaacatt
     2761 gctcactttg aagcacgtcg tgcagaatta gaagcaaaag ctgcagcagc attagcaact
     2821 gcacaagaac gtgcagcgaa aattgcagca ttagcagcag tatcagtatc tgcaactgca
     2881 ggtgatgatg gtcgtttatt cggttctgta tcagctaaag acatcgctga agcattaact
     2941 gcagcaggtg ttggagttgc taaatctgaa gttcgtttag gtgaaggtcc acttcgtaca
     3001 accggcgaac accaagttaa aattcactta caccctgaag tgaatgcaac tgtagcagta
     3061 aacgttgttg ctgaataatc agtagaaata gaaaacccag cgaaagctgg gttttttgtt
     3121 tgctttattt attggttaga atcagtgaga tatttctgct gtgtcggtta atgcttttgt
     3181 ccataggcaa tttcctttgg attttttctc aatcagtttc agaagtgcta aatgcgactc
     3241 ttcctcttca tcgtttgctt taagaataat tgcctcatcg gcatttaaca caattgcaga
     3301 aaattcttct tcaatatcaa taacttcact taccacttca gtttcttctt cgcctaataa
     3361 tgaaatctga ccgccggtca tcattaggaa tacatcagct aagatctccg catccagtaa
     3421 cgccccgtgt agtacacgct tgctattatc aatgccgagc ctgtcgcaaa gtgcatctaa
     3481 attattccgt ttgccggggt acattcttcg tgccatttgc aggctatcgg ttacggtaca
     3541 catttctgcg gtttttgccg gtggattagg cagataagaa aattcttgat ccataaacgc
     3601 cacatcgaag ggggcattgt gaataattaa ttccgcacct ttgatgaaat ccaaaaactc
     3661 ctcggcaatt tcagcaaaaa caggtttatc ttgcaaaaat tcattggtga tgccgtgaac
     3721 tgcaatcgcc tcttcatcta cctcacgcgg tggcttgata taaacgtgat aagttctgcc
     3781 ggttaaacgg cggttaatga cttcaaccgc accgatctca ataatattat gcccaatctg
     3841 tggcgggcca cctgccatat tcattcctgt ggtttcagta tccagcacta cttggcggat
     3901 aattttttct tctgtcatat tcaatttaaa attgtagggg tgaaatattt ttatccctta
     3961 attctgcatt tgattagggg cgaaacatat ttcgccccta cattgttact tcgcaatccg
     4021 tttatatttc actcggtgcg gttgggtggc ggcttcaccg aaggttttct tcttccactc
     4081 ttcatagtcg gagaagttac cctcgtagaa cgtcactttg ccttcatcgc cgtagtctaa
     4141 aatatgggtg gcgatacggt ctaagaacca gcggtcgtgc gaaattacca ttgcacagcc
     4201 cgggaactct aagatcgcat tttccaacgc acgcagggtt tctacgtcta agtcgttggt
     4261 cggctcgtcc agtaacaaca cgttaccgcc acgttgtagt agcttcgcca agtgtaaacg
     4321 accacgttca ccgcctgaaa gctcgcccac acgtttttgc tgatctacgc ctttgaagtt
     4381 gaaacgcccc acataagcac ggcttgggat ttcaaagtta ccaatcgtga gaatatcctg
     4441 cccgttcgac acctcttccc acacggtttt cttatcgtcc atcgcatcac ggaactgatc
     4501 gaccgatgcc attaccaccg tttcaccaag cacgattgaa ccagaatccg gctgttcttt
     4561 accagaaagc atacggaaca aggttgattt acccgcacca tttgccccga taatcccgac
     4621 aatcgccccc ttcggaatag cgaacgacaa gtcgtcaatc aaagtgcgat cgccgtaaga
     4681 tttagtcagg ttttgtacct cgatcacttt atcacctaag cgtggacccg gtggaataaa
     4741 gagttcgtta gtctcgttac gtttttgata ttcgcctgag ttaagctctt caaagcgtgc
     4801 catacgagcc ttacttttcg cttggcgacc ttttggattt tggcgtaccc attccaactc
     4861 tttctcaatc gatttttgac gagccgattc cgccgcttgc tcttgtgcca agcgtttttc
     4921 tttctgctcc aaccaagaag agtagttacc ttcccaagga atgccttcac cacggtcaag
     4981 ctctaagatc cagcccgcaa cgttgtctaa gaagtaacgg tcgtgggtaa ttgccactac
     5041 ggtgccttcg tagtcgtgga ggaaacgctc caaccacgcc accgattccg catctaagtg
     5101 gttggtcggc tcatctaaca ataacatatc cggtttttcc agcaacagac ggcaaagtgc
     5161 cacacggcgg cgttcacccc ctgataaatg ctcgattttt gcgtcccaat ccggcagacg
     5221 taacgcatcg gcagcacgct ctaactggtt ttgaaggtta tggccatcgt gggcttgaat
     5281 aatcgcctct aattccgcct gttttgccgc taatttgtcg aaatcggcat tctcatcagc
     5341 atacatcgca tagacttcat caagctgggt taaggcgttt ttcacttccg caaccgcttc
     5401 ttccaccgct tcacgcacgg tttgctgtgg ggcaagtttc ggttcttgtg gaagatagcc
     5461 gattttaatt cccggttgtg gacgagcctc gccctcgaac tctttatcta cgcccgccat
     5521 aatgcgtaaa agcgttgatt tacccgcccc gtttaagccg agcaccccga ttttcgcccc
     5581 cgggaaaaag ctcagggaaa tatctttaag aatgtgacgc ttcggcggca cgactttgcc
     5641 gacacggtgc atcgtatata caaattgagt tgacattggt tgtattcctc acaaaaaaat
     5701 tcgccttatt ttacttgaat ttacagccaa aatatagggt ggttttggct tttggtaaag
     5761 taaccttttc caatagagat gttatttgag gctgcatagt actatgcatt tctcttacct
     5821 tgacaggtaa gagaaacaaa tcctgaagga aaaaaatttt aaggaagtta ttctatgcaa
     5881 tatgtatgtc caaaaacact caaattattc aacagcattg ttggttgtta taagggagaa
     5941 gattaattct ctacctcatc aaggcttgat tttagattta atatccattt ctaaagatga
     6001 tttagatgat attttggagg gtaatactga tatgaatatt catcaattat taagcctgat
     6061 ttataaggct ggattttttg atgtattaaa catcacaaat aatctatgta taaaactcag
     6121 tcaatttggt ttttatttcc aaaatggcaa tttgagccaa aaagatgatg agcttttgag
     6181 tttatataga gaattctata aacataacga gtttatcact catctcaagt cccatagtct
     6241 ttatggatgt attgagcaac ctacttcggc attttttcat tattgtacta atgaaaactt
     6301 tagaaatgcg tttaatgaag agagcctcta tgattttcaa atgtggaatg tgtttagata
     6361 ggagtttttt atgtcatctc aaaatagttt cttaacaaaa tattcaaaaa gtaattctca
     6421 tagt
//
LOCUS       DANMBQ010000131         6365 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.132, whole genome shotgun sequence.
ACCESSION   DANMBQ010000131 DANMBQ010000000
VERSION     DANMBQ010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6365
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.132"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            387..1919
                     /locus_tag="PXE92_002208"
     CDS             387..1919
                     /locus_tag="PXE92_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDL5761409.1"
                     /translation="MNLVDYSTSLWSVLPALIALILAIVTRKVIISLSIGILFGAFML
                     TNSNFLDALTYIKNSVVSLVYKGAEEGLNSNNVNIILFLLLLGVLTSLLSISGSNQAF
                     ANWAQKKVKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFRVSRAKLAYIL
                     DSTAAPMCVLMPISSWGAYIITLIAGLLATHSITGYSPLGAFMTMSAMNFYAIFAMIM
                     VFFVAYFSFDIGSMARFERQAAHLAELDDEQIETKGHVRDLILPIIALIVATVSMMMK
                     TGADALAESGASFSILGAFENTTVGISLVVGGVAGLIVATICIITSGNISFKNYVRAY
                     GLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVAESIGAEFLPAILFVLAAAMA
                     FSTGTSWGTFGIMLPIGASMAVHSDPALIIPCLSAVMAGAVCGDHCSPVSDTTILSST
                     GAQCNHMDHVISQLPYALLVATASIIGYLVVGFTQSAVLGFIATAVVMAILILLFKEK
                     KH"
     gene            2145..2897
                     /locus_tag="PXE92_002209"
     CDS             2145..2897
                     /locus_tag="PXE92_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5761410.1"
                     /translation="MKIALVTGVTAGFGLAICKLLLQSGYKVIGTGRRAERLEELHLQ
                     FGDKFLPLAFDIQQPDEVEKALNSRPKAWQQIDLLVNNAGLALGLEPAQKADLNDWYQ
                     MIDTNIKGLVTMTRLVLPEMVERKSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSL
                     NLRADLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKAAKVYENVQFVRPEDVANIVL
                     WLNQQPEHVNINRVEVMPVAQTSSALNVARNI"
     gene            2909..4099
                     /gene="trpB"
                     /locus_tag="PXE92_002210"
     CDS             2909..4099
                     /gene="trpB"
                     /locus_tag="PXE92_002210"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDL5761411.1"
                     /translation="MSDTLLNPYFGEFGGMYVPEILVPVLKELEQAFVDAQQDPTFQA
                     EFADLLKNYAGRPTALTLCRNLTKGSKTKLYLKREDLLHGGAHKTNQVLGQILLAKRM
                     GKTRIIAETGAGQHGVATALACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPV
                     QKGSCSLKDACCEAMRDWAANYDTTHYLIGTAAGPHPFPTMVREFQKMIGEEIKRQIL
                     AKEDRLPDAVIAAVGGGSNAIGMFADFIEEQSVKLIGVEPAGKGIETGEHGAPLKHGT
                     TGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRAEYVSITDAEAL
                     EAFQALAKNEGIIPALESSHALAYALKMIKQNPEKEQLLVVNLSGRGDKDIFTVDKIL
                     NGGE"
     gene            4101..4907
                     /gene="trpA"
                     /locus_tag="PXE92_002211"
     CDS             4101..4907
                     /gene="trpA"
                     /locus_tag="PXE92_002211"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDL5761412.1"
                     /translation="MSRFDTLFTALKAKNEGAFVPFVTLCDPGFERSFEIIDTMIKNG
                     ADALELGFPFSDPLLDGPVIQAANKRALDGGYSTDSCFELIAKIRAKYPDIPIGLLLC
                     ANLIFVPTAEVFFQRCQQSGVDAVLIADLPVFAAQEFVPTAEKYGIQPVFICPPNADQ
                     NTIERIAQLTQGYTYLVSRAGVTSAENQAHASNLDNLVESLKQAGAAPILQGFGIAKP
                     EQVKEALRLGADGAISGSAIVKIIERNLADQANLLKELAEFVQVMKAATK"
     gene            4957..6363
                     /locus_tag="PXE92_002212"
     CDS             4957..6363
                     /locus_tag="PXE92_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HDL5761413.1"
                     /translation="MKLTKIVLSVVAVIGAVAVGGSWYTGKQVEEKYQELVVQANNQL
                     KQLSGEFGANIELKDVQIDRHFFISNAKYRLEVDLGNGKKLDFVGNDKLHHGPLPLNR
                     LAKLNLAPVMMSAESKLQAPEALKKLMGEHIGTGFSNISYSGDVEGHFDISPIKHSDE
                     TGHIETTPIKVQYSYDQKLKGVDSTVELESLKIKAEEFDFQIQGIVYDVQTENNESYP
                     NLTLGKGSGKINAIEFKSKDGKLSQIKDVVVKGDNLLKGDRLISTGDLEAATFNIEGV
                     EMGKLKMDMAYDLDAKLTNDITPLLSNPQTLENEKTGELLLQLLAKSFKFHINNFSLE
                     NSKGKVDLALLLNMAQFDPQNLGNMQAVLQALSTSKFTSNINRQYAEDIIRQVSIVTE
                     KLGEEEAKAFAKQQVDAVFLNAGVEQYGLRKVDDNNVKIELTIDNGKVNLNGRELTED
                     ELQMALFMIVMGAGSLGQ"
BASE COUNT         1916 a         1095 c         1430 g         1924 t
ORIGIN      
        1 atcatatctc aaaaggcatt ttaggtaaat aagcataaat aaaaaaatag atactttata
       61 tctaaagata ttcgtgctat cttaaacact gtcctacaaa ttgtagaggt gcgaattcaa
      121 taagtatttc ttctgagtgg aaaacgatga aggggaagga aaggtgaatt tgccgaaatc
      181 aattaagcgt catcttaatt ggttggggtc gttgtcgaaa gaaacgacac tgtcgtagta
      241 aatgctacgg agtgctactg ttagggtggg tttcagatat ttcacatttg ccttcctttc
      301 atatttattt ttataaatat cccagtagat ctcttgtttg gctattctta tttatacaaa
      361 ttatacacag tcattttaga ggttttatga atctagttga ttattctacg tcactttggt
      421 cggtattgcc ggcactgatt gcgctaatat tggcaattgt gacacgcaag gtgattattt
      481 cacttagcat cggtattctc tttggtgcat ttatgcttac taatagcaat tttcttgatg
      541 cacttactta tattaaaaat agcgttgttt ctttagttta taaaggggct gaagaaggat
      601 taaattcaaa taatgttaac attattttat ttttgctttt attaggggta ttaacgtcat
      661 tattaagtat ttcaggtagt aatcaggcgt ttgcgaattg ggcgcagaaa aaggtaaaag
      721 gcaaacgagg cgcaaaatta atggcggcag gtttggtttt ctttaccttt attgatgact
      781 atttccacag tttagcagta ggtgcgattg cccgccctgt tacggataaa ttccgtgttt
      841 ctcgtgctaa attagcttat attttagatt ctaccgccgc tccaatgtgc gtgttaatgc
      901 caatttcaag ctggggggct tatattatta ccttaatagc tggcttattg gctacgcatt
      961 ccatcacagg ctattcgcca ctaggcgcat ttatgacaat gagcgcaatg aacttttacg
     1021 ccatttttgc gatgattatg gtgttctttg tggcatattt ctcatttgat attggttcga
     1081 tggcgcgttt tgaacgtcaa gcagcgcatt tagcagaatt agatgatgag caaattgaaa
     1141 cgaaaggaca cgtgcgcgat ttgattttgc caattattgc acttattgtt gctacagtct
     1201 caatgatgat gaaaacaggt gcagatgcac tggccgaatc aggtgcttca ttttctatac
     1261 taggtgcttt tgaaaatact acggtaggca tttcattagt tgttggtggt gtggcagggc
     1321 ttatagttgc aactatttgt atcattacaa gcggtaatat ttcttttaaa aattacgtcc
     1381 gtgcttatgg cttaggtgtg aagatgatgt ctggtgcaat cactattctc ttctttgcgt
     1441 ggacaataaa cggcgtagta agtgatatgc aaacagggaa atatctatca ggattggttg
     1501 cagaaagcat tggagcagag tttttacctg caattctatt tgtgttagcc gcagcaatgg
     1561 cgttttcaac aggaactagc tggggaacat ttggtattat gttgccaatt ggagcctcaa
     1621 tggcagtgca ttcagatcca gcattaatta ttccttgttt atctgcagta atggctggtg
     1681 cggtttgtgg tgatcactgt tctccagtat ctgataccac tattctttct tcaacaggcg
     1741 cacaatgtaa tcatatggat catgtcattt ctcaattacc ttatgcttta ttagttgcaa
     1801 cagcttctat tattggttac ttagtggttg gctttaccca atcagcggta ttgggattta
     1861 ttgctacagc tgttgttatg gcaatactca ttttgctttt taaagaaaaa aagcattaat
     1921 ttccgaaaat gtgaagggaa tcacagaatg agatttattg atgagataaa atagcactca
     1981 agatatggat atcgaatgtt gtgttatata aatcttaaaa taagatcctc ctagcattag
     2041 cgtacctttt ggtacgcttt tttcttttat ggcaatatta tttcttgcaa ttttaatttt
     2101 tttgtactac tttaatagta cattttaaat ttgagggtga aaagatgaaa atagcattag
     2161 tcacaggagt aactgctgga tttgggttgg caatttgtaa attattgctt caatcgggtt
     2221 ataaagtaat tggcacgggc agacgggcag agcgtttaga agaactgcat ttacaatttg
     2281 gcgataaatt tctaccgctt gcatttgata ttcaacagcc cgatgaggtg gaaaaagcac
     2341 tgaatagccg ccctaaagcg tggcaacaaa ttgatttatt agtaaacaat gcaggccttg
     2401 cactcggctt agaaccggca cagaaagcag atttgaacga ttggtatcaa atgatcgata
     2461 ccaatattaa aggattggta acgatgacac gcttagtttt gcctgaaatg gtggagcgga
     2521 aaagtgggca tattattaat atcggctcga ttgccggcac ttacccttac ccgggcggta
     2581 atgtatatgg tggtactaaa gccttcgtga aacagtttag cctaaatttg cgggcagatt
     2641 tagccggcac taaagtgcgt gtttccaatg ttgagccggg gctatgtggc ggtacggaat
     2701 tttcaaatgt acgctttaaa ggcgatgatg aaaaagcggc taaagtttat gaaaacgtgc
     2761 agtttgtgcg cccggaagat gtggcaaata ttgtgctttg gctgaatcag caacctgaac
     2821 acgttaatat taatcgggtt gaagtgatgc cggtggctca aacttcttct gccttaaatg
     2881 tagcgagaaa tatttaaaag gaaatattat gtcagacaca cttcttaatc cttattttgg
     2941 tgaatttggt ggtatgtatg tgccggaaat tttagtgccg gtgctaaaag aattagaaca
     3001 agcctttgta gatgctcagc aagacccaac attccaagct gaatttgccg atttactcaa
     3061 aaactatgcc ggtcgcccga ctgctttaac cctttgtcgt aatttaacca aaggcagtaa
     3121 aaccaaactc tatttaaaac gtgaagatct tttacacggt ggggcacata aaaccaacca
     3181 agtgctaggg caaatcttac tcgctaaacg aatgggtaaa acccgcatta ttgccgaaac
     3241 aggagcagga cagcacggtg tggcaaccgc attagcgtgt gcgatgttag gaatgccttg
     3301 cgtggtgtat atgggcgcaa aagatgtaga acgccaatcg ccaaatgtat tccgtatgcg
     3361 tttaatggga gcggaggtga ttccggtaca aaaaggctct tgctcgctca aagatgcctg
     3421 ttgcgaggca atgcgggatt gggcggcaaa ttatgatact acccattacc taatcggcac
     3481 tgcagccggc ccgcacccgt tcccgacaat ggtgcgtgaa tttcagaaaa tgattggcga
     3541 agagatcaaa cgtcaaattt tagcaaaaga agaccgcttg cctgatgcgg tgattgctgc
     3601 cgtaggcggt ggctcaaatg ctatcggtat gtttgcagat tttatcgaag agcaatccgt
     3661 caaattgatc ggtgttgagc cggcaggaaa aggaattgaa accggtgaac acggtgcacc
     3721 gctcaaacac ggcacaacgg ggatctattt cggtatgaaa tcgccgatta tgcaggataa
     3781 agacgggcaa attgaagagt cttactccat ttcagccggc ttagatttcc cttctgtcgg
     3841 gccgcaacac gcttatttaa atgcgacagg gcgagctgaa tatgtatcga ttaccgatgc
     3901 agaggcttta gaggcattcc aagcattagc caaaaatgag gggattattc cggcgttaga
     3961 atcttcccac gccttagcct atgcgttaaa aatgattaag cagaaccctg aaaaagagca
     4021 gttattagtg gtgaatttat cgggtcgagg cgataaagac attttcaccg tggataaaat
     4081 tttaaatgga ggagagtaaa atgagccgct ttgatacgct atttactgca ttaaaagcaa
     4141 aaaacgaagg ggcttttgtg ccgtttgtga cattatgcga tcctggtttt gaacgcagtt
     4201 ttgagattat cgacacgatg attaaaaacg gggctgatgc tttagagcta ggctttccgt
     4261 tttctgaccc cctcttagac gggccggtga ttcaagcagc gaataaacga gctttagatg
     4321 gtggctatag cactgatagc tgttttgagc tgattgccaa aattcgagct aaatatccag
     4381 acattcctat cggtttacta ctgtgtgcca atttaatttt tgtgccaacc gcagaagtat
     4441 ttttccaacg ttgccaacaa agtggagttg atgcggtgtt gattgctgat ttgcctgttt
     4501 tcgctgctca agagtttgtg ccaaccgctg aaaaatatgg aattcagccg gtgtttattt
     4561 gcccgccgaa tgctgatcaa aacaccattg aacggattgc tcaattaacc caaggctaca
     4621 cttatttagt ttcccgtgcc ggtgtaacta gtgctgaaaa ccaagctcac gcaagtaatt
     4681 tggataattt agtggaaagt ttaaaacaag ccggagctgc ccctatctta caaggttttg
     4741 gcatagccaa acctgaacag gtaaaagagg cgttaaggct tggggcagac ggggcgattt
     4801 caggctcagc gattgtgaaa attattgaac gtaatttagc tgaccaagct aatttgctca
     4861 aagaacttgc cgaatttgta caagtgatga aagcggctac gaagtaaact acaagcggtc
     4921 attttttaaa tttttttgaa aataaaagga aacagaatga aattaacaaa aattgttctt
     4981 tcagttgtag cggtaattgg tgctgttgca gttggcggaa gttggtacac aggtaagcag
     5041 gttgaagaaa aatatcaaga attggttgtt caagctaata accaacttaa acaactgagt
     5101 ggcgaatttg gtgcgaatat tgagcttaaa gatgtgcaga tcgatcgcca tttctttatc
     5161 tctaatgcga aatatcgttt agaagtggat ttgggtaatg gtaagaaatt ggactttgtt
     5221 ggtaatgata aacttcatca cggtccgcta ccgcttaatc gtttagcgaa acttaattta
     5281 gctcctgtaa tgatgagtgc ggaaagcaaa ttacaagctc ctgaagccct taaaaaattg
     5341 atgggtgaac atattggcac cggtttttct aatatcagct attcgggcga tgtggaaggg
     5401 cattttgata tttccccgat taaacatagt gatgaaacag gtcatattga aaccacgcca
     5461 atcaaagtgc aatatagcta cgaccaaaaa ttaaaagggg ttgatagcac tgttgagcta
     5521 gaaagtctta agataaaagc agaagaattt gattttcaaa ttcaaggtat agtttatgat
     5581 gttcaaacag aaaataatga aagttatcct aatttaactt taggcaaagg tagtggaaaa
     5641 attaacgcta ttgagtttaa gtctaaagat ggcaaattat ctcaaattaa agatgttgtg
     5701 gtgaagggcg ataatctatt aaaaggcgat cgtttaattt ctaccggaga tttagaggca
     5761 gccactttca acattgaggg tgttgaaatg ggtaaattaa aaatggatat ggcatacgat
     5821 ttagatgcta aattaaccaa tgatattacg cctttattat ctaatcctca aacattagaa
     5881 aatgaaaaaa caggcgagtt attattacaa ctattagcaa aatcatttaa attccatatt
     5941 aataatttct cacttgaaaa cagcaaaggc aaagttgatt tggctttatt actgaatatg
     6001 gctcaatttg acccacaaaa tcttggtaat atgcaagcgg tattgcaagc cctttcaaca
     6061 agtaaattca cttcaaatat caaccgtcaa tatgcggaag atattattcg ccaagtctca
     6121 atagttacag aaaaattagg cgaagaagag gcgaaagcat ttgccaagca acaagttgat
     6181 gctgtttttc tcaatgcggg agttgaacag tacggattaa gaaaagtaga tgacaacaat
     6241 gtgaagattg aattaactat agataacgga aaagtgaatt taaacggacg tgaactgacc
     6301 gaagatgaac ttcaaatggc tctgtttatg attgtgatgg gagcaggctc actcgggcaa
     6361 taatc
//
LOCUS       DANMBQ010000132         6149 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.133, whole genome shotgun sequence.
ACCESSION   DANMBQ010000132 DANMBQ010000000
VERSION     DANMBQ010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6149)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6149)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6149
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.133"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            24..1940
                     /gene="iolC"
                     /locus_tag="PXE92_002213"
     CDS             24..1940
                     /gene="iolC"
                     /locus_tag="PXE92_002213"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HDL5761414.1"
                     /translation="MATVNHQDRPLDLICLGRVAVDFYGQQIGSRLEEMTTFSKYLGG
                     SSGNVAYGTAVQGLRSSMLARVGDEHMGRFLREELQSVGVDTSHLITDKERLTALVIL
                     GIKDKETFPLIFYRDNCADMAITKDDFSEAYIASSRCLAITGTHLSNPKTREAVLTAL
                     EYAGRNEVKRALDIDYRPVLWGLTSLGDGETRYIDSAEVTKSLQEVLHHFDLIVGTEE
                     EFHIAGGSTDTLTALKNVRKVSNAVLVCKRGALGCSVFEGELPNDLDGGLNVYGVRVE
                     VLNVLGAGDAFMSGLLRGYLNNEGWEQACHYANACGALVVSRHGCSPAMPTKRELDDY
                     LTRAESVPRPDLDERLNHLHRVTTRKKQWENLCIFAFDHRKQLVDMANKVGADLARIP
                     KLKQLLLKAMEQTATQSGLPQNQAGILADTTFGQDVLNEITGKDYWIARPIEEPSSRP
                     LELEYGDLGSQLASFPRDHVIKCLAFYHPNDESGLKARQDRKLKEVYQACCRTGHELL
                     LEIILPADMPQSEAFYNQAIAHFYQLGIKPEWWKLPDVSRAQWQAISATIEANDPDCR
                     GILILGLDAPLEVFKDTFEQAKGCEKVKGFAVGRTIFGEPSEKWLAGELDDNTLISAV
                     SEKYRTLIDLWQQR"
     gene            2229..3569
                     /locus_tag="PXE92_002214"
     CDS             2229..3569
                     /locus_tag="PXE92_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HDL5761415.1"
                     /translation="MSCNTSPKRFHASWESIKQHQVPEWYEDAKFGIFIHWGIYSVPA
                     FAPPTCQLGEIDIDEQWFCNNPYAEWYFNSINVKKGPTYEHHIKTYGESFAYNDFLPL
                     WKAEKWQPAEWAKLFAKAGAKYVVLTTKHHDGFCLYPSKYTDFNCMQAGPKRDLMGEL
                     TENVREQGLKMGAYYSGIIDWTYSSAPIFTESQNFSNACPTYEYADYAYKQVVELIDR
                     YKPDVLWNDIGWPKVGEHMLPHLFAHYYNSVQEGVVDDRWNKLWCDFTSKEYKHGVAS
                     RDKKWEMCRGMGLSFGYNQVEDESHLISVKDLISLLVETVADNGNLLLNIGPKADGTI
                     PQEQVERLLALGSWLEINGEGIYKSRCSQHQTEQIGDVTYRYTKVGADLYLYIDGLTE
                     AQISLPLSVYGELQALNTELKFTIENTAQGRVLHIQNYQPDWYVLGFKIADGEK"
     gene            3572..4912
                     /locus_tag="PXE92_002215"
     CDS             3572..4912
                     /locus_tag="PXE92_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL5761416.1"
                     /translation="MSVSQRFIDFMNAHVAPVARRMENQPHISAIRDGFIVVLPFLIV
                     GSFIMILLIPPFDENTQNAFGQAWWRFANWASPYGWNFFQMSFNAISLFTSASIAYNL
                     AKAYKREPLPAAFLSVMAFLLVAAPVKDGMMDIKFFGGIGLFSAIFIAIYSVEMTRLL
                     EFLKIKIRLPKEVPHAVAESLNIVIPILAILLTLYPFAIWVESATGRNIPQLIMDFMA
                     PLIAVSDSLGAICLFVIATHLLWFLGINGSLVLMQLWTPFLLQNMAANLAAFQAGEPL
                     PFIITNSFWDFYIVHGASGGVIALAFLLVRSKSAHLRSIGKIGLVPSFFSIGEPIVYG
                     VPMVVNPLFFIPLIFAPLANAVIAYLILDFNLIHRVYLMAPWTTPAPIGAYLVSAGDI
                     WAPILSIALIILDIVIYYPFFKMYEKVCVEKEKAQNLDEKAQQELLEKARMAAQ"
     gene            5050..5874
                     /locus_tag="PXE92_002216"
     CDS             5050..5874
                     /locus_tag="PXE92_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL5761417.1"
                     /translation="MNGPTQLAHFQEQIRKEYDGLSKRLKQVAQYVLDNGNSVVFDTV
                     STIAERADVPPSTLIRFANAFGFSGFNEIKQLYRQDMMEGTSRYTERVQLFRQIEPLD
                     EQNSELNHILDVFVQGNTQALQQLSTQVSEEQLAQTVDILHNAKRIFIVGLKRSFSIA
                     NYLNYALHHLDYDVFMIDGSGGMFDEQLSRIREGDAVIAVSFSPYANETLNVVTATAR
                     PGVKHIAITDSQLSPLLSFSDVSFIIKEAQVSGFRSQCATMTLAQTIAVSLALKKA"
     gene            complement(5918..>6149)
                     /locus_tag="PXE92_002217"
     CDS             complement(5918..>6149)
                     /locus_tag="PXE92_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PTS transporter subunit EIIB"
                     /protein_id="HDL5761418.1"
                     /translation="SIILEIINALGNKENIKQVEACLTRLRVVLHNNGLLNKSALKKL
                     GAVDVIKVGDTQQIIFGAKAGQYRDEINALIG"
BASE COUNT         1737 a         1312 c         1384 g         1716 t
ORIGIN      
        1 tttacttgtt gtaaggagcg gttatggcaa cagttaatca tcaagatcgt ccattggatc
       61 ttatctgttt agggcgtgtg gcggtggact tttatgggca acaaatcggt tcccgtttgg
      121 aagagatgac cacattttca aaatacctcg gcggctcgtc aggcaatgtg gcttacggta
      181 cggcggtgca aggtttacgt tcttcaatgc tggcaagggt cggtgacgaa catatggggc
      241 gttttctacg tgaagagcta caaagcgtag gcgtggacac cagccattta attaccgata
      301 aagaacgctt aactgcactg gttattctcg gcattaaaga taaagagact tttccgctga
      361 ttttctatcg tgataactgt gcggatatgg caatcaccaa agacgatttt agcgaagcct
      421 atattgcttc cagccgttgc ttagcaatta ccggcacgca cctgtcaaac cctaaaaccc
      481 gtgaagctgt gctgaccgca ctcgaatatg cgggtagaaa tgaggtaaaa cgagcgttag
      541 atattgatta tcgccctgtg ttatggggat taacctcact cggtgatggc gaaacccgtt
      601 atatagacag tgccgaagtc accaaatcgc tacaagaagt attgcaccat ttcgatctga
      661 ttgtcggcac agaggaagaa tttcatatcg caggcggttc gaccgatact ctcactgcac
      721 tcaaaaatgt gcgtaaagtc tctaatgccg tattagtgtg caaacgtggg gcattagggt
      781 gttcagtatt tgaaggcgag ctgccgaatg atttagacgg tggcttgaat gtgtacggcg
      841 tgcgtgtaga agtgctgaat gtgctgggtg caggcgatgc ttttatgtcg ggcttactgc
      901 gtggctactt aaataacgaa ggttgggaac aagcgtgcca ctatgccaat gcgtgcggag
      961 cgttagtggt atctcgtcac ggctgttcac cggcaatgcc gaccaaacgt gaacttgacg
     1021 attatttaac ccgtgcagag agtgtaccac gtccggattt agatgagcgt ttaaaccact
     1081 tacaccgtgt caccacccgc aaaaaacagt gggaaaatct ctgtattttt gcttttgatc
     1141 accgcaaaca gttggtggat atggcaaata aagtcggtgc agatcttgct cgcataccga
     1201 aactgaaaca gctgctatta aaagcgatgg aacaaaccgc aactcaatcc ggcttaccac
     1261 aaaatcaagc agggatccta gccgatacca ctttcgggca agatgtactt aatgagatta
     1321 ccggcaaaga ttactggatt gcccgcccga ttgaagagcc gtcttcccgc ccgctggaat
     1381 tagagtatgg agatttaggc tctcagctag catcattccc acgcgatcac gtcatcaaat
     1441 gcttggcatt ttaccacccg aatgatgaaa gcggtttaaa agcccgccaa gatcgcaagt
     1501 taaaagaggt gtatcaagcc tgttgccgta ccggtcacga gctattgttg gaaattattc
     1561 tgcctgctga tatgccacag agtgaggctt tctataacca agcgatagca catttctacc
     1621 aacttggcat taagccggaa tggtggaaat tgccggatgt ttctcgcgca caatggcaag
     1681 cgatttccgc caccattgag gcaaacgatc cggactgtcg tggtatttta attttaggtt
     1741 tagatgcccc gttagaggtg tttaaagaca cctttgaaca ggcaaaaggc tgtgagaaag
     1801 tgaaaggctt tgcagtcggc cgcaccattt tcggtgaacc gtccgaaaaa tggcttgccg
     1861 gtgaattgga cgacaatacc ttgatttctg cggtatcgga gaaatatcgc actttaatcg
     1921 atctctggca acaacgttaa tcatattgct ttaagtgaaa accccttagc ttatgatatt
     1981 aagcaagggg ttttgttttg caaaaaatcc ggctaaacag accgcttgct agccgtaaaa
     2041 atgcccgaat tttcctaaaa aagcgaatat cgggcattcc tcaatctgct tatcacaaaa
     2101 taagtgtgat gaagttcaca tttcatacat aaaccccccc ctttttatcg aaacaaattg
     2161 ttttattttt atcaaaatgg aaaatgtatt tcagtttagt tctatttaga ttcaatagga
     2221 gtctgtgtat gagttgcaac acttcaccaa aacgtttcca cgccagttgg gagtcgatca
     2281 aacagcacca agtaccagag tggtatgaag atgctaagtt tgggattttt attcactggg
     2341 ggatttactc cgtacccgcc tttgccccac cgacctgtca gttaggtgaa attgatattg
     2401 atgaacagtg gttctgtaat aacccttatg cagaatggta ttttaattcc atcaatgtca
     2461 aaaaaggccc gacctacgaa catcatatca aaacttatgg cgaatccttt gcctataacg
     2521 acttcctgcc actatggaaa gcggaaaaat ggcaaccagc agaatgggcg aaactgtttg
     2581 ccaaagctgg cgccaaatat gtggtattaa ccaccaaaca tcacgatggt ttctgtctct
     2641 atccaagtaa atataccgat ttcaactgta tgcaagccgg accgaagcgg gatttaatgg
     2701 gcgagctgac tgaaaatgtg cgggagcaag gcttaaaaat gggcgcttac tactcgggca
     2761 ttatcgattg gacttattcc tctgccccga ttttcaccga aagtcaaaac ttctcaaacg
     2821 cttgcccgac ttacgaatac gctgactacg cctataaaca agtggtagag ctgatcgacc
     2881 gctataaacc agatgtattg tggaatgata ttggctggcc aaaagtgggc gagcatatgt
     2941 taccacacct atttgctcat tattacaaca gcgttcaaga gggcgtagtg gacgaccgct
     3001 ggaacaaact atggtgcgat ttcacctcca aagaatacaa acacggcgtg gcttcccgtg
     3061 ataagaaatg ggaaatgtgc cgtggtatgg gcttatcgtt cggctataac caggtagaag
     3121 acgaaagcca tttgatttcg gtgaaagact tgatttccct attggtagaa accgtagccg
     3181 acaacggcaa tttattgctg aatatcggcc cgaaagcaga tggcactatt ccgcaagagc
     3241 aagttgaacg cttattagca ctggggagct ggctggaaat aaatggagag ggaatctata
     3301 aatcccgttg tagccaacac caaaccgagc aaatcggtga tgtaacctat cgttatacca
     3361 aagttggggc ggatctctat ctttacattg atggcttaac cgaagcccaa atcagcttgc
     3421 cactgtcagt ttatggtgag ctacaagcac tcaataccga gctgaaattt accattgaaa
     3481 acaccgcaca aggcagagtg ttacatattc aaaactacca gccggattgg tatgtattag
     3541 gctttaaaat tgcagatggg gagaaatagg tatgtccgtt tcacaacgtt ttattgactt
     3601 tatgaatgcc cacgttgctc cagtagcacg tcgaatggaa aatcaaccgc atatttccgc
     3661 tattcgagac ggttttattg tagtgttacc attcttaatt gtcggcagct ttattatgat
     3721 tttgctaatt ccgccatttg atgaaaatac ccaaaatgct ttcgggcaag cttggtggcg
     3781 ttttgcgaat tgggcaagcc cttacggttg gaatttcttc caaatgtcgt ttaatgcgat
     3841 ttcattattt acctctgcca gtatcgccta caaccttgcc aaagcctata aaagagagcc
     3901 cctgccagcg gcatttctct cggtaatggc atttttgtta gtggctgcac cggtcaaaga
     3961 cggaatgatg gatattaaat tctttggcgg tattgggcta ttctctgcga tttttattgc
     4021 catttattcg gtagaaatga cccgcttgtt ggagttctta aaaattaaaa tccgcttacc
     4081 gaaagaagtg ccgcacgctg tagcagaatc tctgaatatc gtgattccaa ttttagcgat
     4141 tttactgact ctctatccgt ttgccatttg ggtggaaagt gccacaggtc gtaatattcc
     4201 acaactaatt atggacttta tggcgccatt gattgctgtg agtgactcgc taggggcaat
     4261 ttgcttgttc gttattgcta cccatttgct ctggttctta ggcattaacg gctcattggt
     4321 actaatgcaa ctttggacac cattcctact gcaaaatatg gcggcaaact tagcagcatt
     4381 ccaagctggt gaaccgctcc cctttatcat caccaattcc ttctgggatt tctatatcgt
     4441 acacggggca agtggtggtg taatagcctt ggcattcctg ctggtacgca gtaaatcggc
     4501 acacttacgc tctatcggta aaatcggctt ggttccgtcc ttcttctcta tcggtgaacc
     4561 aattgtgtat ggtgtgccaa tggtggttaa tccgctgttc tttatcccgc tgattttcgc
     4621 accactagcg aatgcggtta ttgcctacct gattttagat tttaacctta ttcaccgtgt
     4681 ttacttgatg gcaccgtgga caacaccggc accgattggg gcatatctgg tttctgccgg
     4741 tgatatttgg gcaccaattt taagtattgc actgattatt ttggatattg tgatctacta
     4801 tccattcttc aaaatgtatg aaaaagtctg cgtcgagaaa gaaaaagcac aaaatctaga
     4861 tgaaaaagca caacaggagt tgctagaaaa agcacgaatg gcagcacaat aacacttatt
     4921 tctagcgtaa ttgagagggg ctaatcgaaa gattagccct tatttttgca aaaaattgac
     4981 aaaatttatc cgcttgtaaa caagaaaagc gtataatgaa ataaaaaatt caagcagaga
     5041 taatttgaaa tgaatggacc tactcaatta gcacattttc aagaacaaat ccgaaaagag
     5101 tatgacggac taagtaaacg tttaaaacaa gtggcacagt atgtgctgga taatggcaac
     5161 agcgtggtgt ttgatacggt ttctaccatt gctgaacgag ctgatgttcc cccttcaacc
     5221 ttaatccgtt ttgcgaatgc gtttggattt agcggtttta atgaaattaa acagctttat
     5281 cgccaagata tgatggaagg cacatcacgt tacaccgaac gtgtgcaact ttttcgtcaa
     5341 attgaaccgc ttgatgagca aaacagtgag ctcaatcata ttttagatgt gttcgtacag
     5401 ggtaatacgc aggcactgca acagttatcg acacaagtca gcgaagagca gttagcacaa
     5461 acggtagata ttttacacaa tgccaaacgc atttttattg tgggtttaaa acgctcattc
     5521 agcattgcga actacctaaa ctatgcgttg caccatttgg actatgatgt ctttatgatc
     5581 gatggttcgg gcggtatgtt tgacgagcaa ttaagccgaa tccgtgaagg tgatgcggtg
     5641 attgccgtga gcttttcccc gtatgcgaat gaaacactca acgtggtgac agcaactgcc
     5701 agaccggggg taaaacatat tgcgatcact gatagccaac ttagcccact cctttcattt
     5761 agcgatgtgt cgtttattat taaagaagca caggtgagtg gttttcgatc ccagtgtgcc
     5821 acaatgacgc tcgcacaaac gattgccgtt tcactggcgt tgaaaaaagc ctagattaag
     5881 aaagtgaaag acctgcgtaa atacaggtct ttgtctatta accgattaaa gcgttaattt
     5941 catcacgata ctgcccggct tttgcaccaa aaataatttg ttgcgtatca ccgactttaa
     6001 tgacatcaac cgccccaagc tttttcagtg ccgacttatt taataaaccg ttgttatgta
     6061 acaccacacg taaacgggtt aaacaagctt caacttgctt gatattctct ttgtttccta
     6121 aagcattaat aatttctaga atgatagat
//
LOCUS       DANMBQ010000133         6133 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.134, whole genome shotgun sequence.
ACCESSION   DANMBQ010000133 DANMBQ010000000
VERSION     DANMBQ010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6133)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6133)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6133
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.134"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            116..1105
                     /gene="dusB"
                     /locus_tag="PXE92_002218"
     CDS             116..1105
                     /gene="dusB"
                     /locus_tag="PXE92_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HDL5761419.1"
                     /translation="MQIGQYAIKNRIFLAPMAGITDQPFRRLCSQLGAGLTFSEMMST
                     NPDVWHTEKSRLRLAHHDEIGLNAVQIAGSDPVEMAKAAKINVEYGADIIDINMGCPA
                     KKVNKNMAGSALLRNPKLVAQILDSVVNAVDVPVTLKIRTGWDQENRNCLQIAKIAEQ
                     AGIKALTIHGRTRSCLFNGEAEYESIKAVKEAISIPVIANGDIDSAEKAKFVLDYTKA
                     DAIMIGRASFGNPWIFKEINDFFETGLSSPLSIDKKYQLMFKHIEDLHQFYGEEKGYR
                     IARKHVGWYTEKLNPESNFKRTFNTLSSTKEQLYALEDFVKSIHLESQLRKVG"
     gene            1110..1406
                     /gene="fis"
                     /locus_tag="PXE92_002219"
     CDS             1110..1406
                     /gene="fis"
                     /locus_tag="PXE92_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HDL5761420.1"
                     /translation="MLEQQPTQNPLTVTMLNAQAQQVNKPLRDNVKAALKNYLSQLNG
                     EDPTELYELVLSEIEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG"
     gene            complement(1511..4297)
                     /locus_tag="PXE92_002220"
     CDS             complement(1511..4297)
                     /locus_tag="PXE92_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin family TonB-dependent
                     receptor"
                     /protein_id="HDL5761421.1"
                     /translation="MKYHHFRYSPVALTVLFALSHSYGAATENKKIEENNDLAVLDEV
                     IVTESHYAHERQNEVTGLGKVVKNYHEMSKNQILGIRDLTRYDPGISVVEQGRGASSG
                     YAIRGVDKNRVSLLVDGLPQAQHYHTLGSDANGGAINEIEYENIRSIELSKGASSAEY
                     GSGALGGAIGFRTKDAQDIIKEGQHWGLDSKTSYASKNSHFLQSIAAAGEAGGFEALV
                     IATHRHGKETKIHSEANKLKHNIRRITGFENRYDLYPNSAQNAPGGSFFIVEDTCPTL
                     DCTPRARVKLNRDNFPVRTFPEYTPEERKQLEQIPYRTEQLSAQEYTGKDRIAPNPLD
                     YKSNSVFMKFGYHFNSSHYLGAILEDTKQRYDIRDMQTPAYYTKDDINLSLRNYVYEG
                     DNILDGLVFKPRIPYGLRYSHVKFFDERHHKRRLGFTYKYKPENNRWLDSIKLSADKQ
                     DIELYSRLHRLHCSDYPVVDKNCRPTLDKSWSMYRTERNNYQEKHRVIHLEFDKALNA
                     GQGVFKQTHKLNLGLGFDRFNSLMDHGDMTAQYTKGGYTSYRGRGRLDNPYIYRRDPR
                     SIETVSLCNNTRGDILNCEPRKIKGDSHFVSFRDLVISEYVDLGLGVRFDQHRFKSDD
                     PWTLSRTYRNWSWNGGITLKPTEFVSLSYRISNGFRVPAFYELYGKRDHIGLKDNEYV
                     QRAQRSHQLEPEKSTNHEIGVSFKGQFGYLDVSYFRNNYKNMIATACKRIIQKSHCFY
                     NYHNIQDVALNGINLVAKFDLHGILSMLPDGFYSSVAYNRVKVKERKLTDSRLDSVND
                     PILDAIQPARYVLGFGYDHPEEKWGIGITTTYSKAKNADEVAGTRHHGIHRVDLGGKL
                     TGSWYTHDITGYINYKNYTLRGGIYNVTNRKYSTWESVRQSGVNAVNQDRGSNYTRFA
                     APGRNFSLAFEMKF"
     gene            complement(4391..>6133)
                     /locus_tag="PXE92_002221"
     CDS             complement(4391..>6133)
                     /locus_tag="PXE92_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL5761422.1"
                     /translation="SSFVLLNAALLAACSSNGGSFDVQSAKVESQTQTTPKKPSLQDD
                     NSNARRTVSASETEALLQPGFGFSAKIPRRNLFPQGKEDVAPIGDIKEITGDLTKIPY
                     EEEVKAYGSSADGFSHTHDRNHKLYTRDFNFVRSGYVLHSGAKPEIKPKEILRTGAHG
                     YVYYLGIEPAKAIPTQKATYKGYWDFTTDARKGRDSKYFSNSAGINIGATPENSYDIN
                     VDDSEKPMGHTGEFTADFANKTLTGTLVRNGYVSRSKEQKITTIYDIDAKIKGNRFSG
                     KANAKNTDDPYFGKSSTTLEGGFFGGKAQELAGKFLADDKSVFVVFAGKRDAKKDDSE
                     SAFDAFKIKLKDLNKSEMDTFGNATHLIINNKQIPLIAEGKKSFAEMKFYDLVTRTID
                     DKTYRVSVCCNNLDYVKFGTYSEGNNSDTAHQYLVGERTAVADLPTGTVKYRGTWDGV
                     MYSKSGSAGAESPSNSESGTRSLFDVDFVNKKINGKLIANDGVEERPMLTLEGNLKGN
                     GFAGTAKTGNSGFNLDPKSTNGGTVVHINTQFEGGFYGPKATELGGIVHVHSAETDKD
                     RVSITFGGKRQIEK"
BASE COUNT         1866 a         1279 c         1086 g         1902 t
ORIGIN      
        1 atcagtacta aactgatcca taagctatta taagaaagta cggtatttac cgtacttttt
       61 atttggatat ccctctggtt aaaattactt caaatttgtt aataaaaggt taaaaatgca
      121 aataggacaa tatgcaatca aaaatcgtat tttccttgca cctatggctg gaatcacaga
      181 tcagcctttt cgccgcttat gtagccaact tggagcaggt ttaacatttt cagagatgat
      241 gtctaccaat cctgatgtat ggcatactga gaaatcacga ttgcggttag cacaccacga
      301 tgaaataggc ttaaatgccg tacaaattgc aggttctgat cctgttgaaa tggcaaaggc
      361 tgcaaagata aatgttgagt atggtgccga tattattgat attaatatgg gttgcccggc
      421 aaaaaaggtg aataaaaata tggcaggctc tgctctttta cgtaacccca aattagtcgc
      481 tcaaatatta gattctgtag tcaatgccgt tgatgtccct gtgacactaa aaattagaac
      541 aggttgggat caggaaaata gaaattgtct gcaaattgcg aaaattgcag aacaagccgg
      601 cataaaagct ctcactattc acgggcgtac tcgaagctgt ttatttaatg gcgaagctga
      661 atatgaaagt attaaggcag taaaagaagc aatttctatc ccagtgatag caaacggaga
      721 cattgactct gcggaaaaag caaagtttgt tctcgactat accaaagccg atgcaatcat
      781 gattgggcgc gctagctttg gaaatccttg gatatttaag gaaattaatg atttttttga
      841 aactggatta tcttcaccat tatcaattga taaaaaatac caattaatgt ttaaacatat
      901 tgaggatttg caccaatttt atggtgaaga aaaaggttat cgtattgcac gaaaacatgt
      961 tggttggtat accgaaaaat taaatccgga atcaaatttt aaacgcactt ttaatacact
     1021 aagttccaca aaagagcaac tttatgcatt agaagatttt gttaaatcga ttcatttaga
     1081 atctcaatta agaaaagttg gataaaaaaa tgttagagca acaacctaca caaaacccat
     1141 taacagtaac aatgttaaat gcacaagcgc agcaggttaa taaaccactt cgcgataatg
     1201 tgaaagcagc attaaaaaac tatttatctc aattaaatgg tgaagatcca acagaattat
     1261 acgaattagt attatctgaa atcgaacacc caatgttaga tatggtgatg caatatactc
     1321 gcggcaatca aactcgtgca gcaacaatgc taggcattaa ccgtggcaca ttacgcaaaa
     1381 aattaaaaaa atacggtatg ggttaatcta accgaccgtt aaaacacgat tttaattcgt
     1441 atgtaattag ttagagccaa caaaaaacgc tgaatatact attcagcgtt tttctatttt
     1501 attttgccgt ctaaaacttc atttcaaatg ctaaactgaa atttctcccc ggagcggcaa
     1561 atcgagtgta attgctaccc cggtcttggt ttactgcatt cacaccggat tggcgcactg
     1621 attcccaagt ggaatattta cgattagtca cattataaat tcctccacgt aaggtgtagt
     1681 ttttataatt gatgtaaccg gtaatatcat gggtgtacca agaaccggtc agtttgccac
     1741 ctaaatcaac gcgatgtatg ccgtgatgac gtgtgcctgc cacctcatcg gcgtttttgg
     1801 ctttagaata ggtggtagta atgccaattc cccatttttc ttctgggtga tcgtagccga
     1861 atccaagcac atagcgtgct ggctgaatcg catctagaat aggatcgttt acgctatcga
     1921 gtcttgagtc ggttagtttc cgctctttta cttttacacg gttataagca actgatgaat
     1981 aaaaaccatc tggcagcata gataaaatac cgtgtaagtc aaatttagcg actaaattta
     2041 tcccgtttag tgctacatct tgaatattat ggtagttata gaaacagtgt gatttttgta
     2101 ttattctttt acatgctgtc gcaatcatat ttttatagtt attacggaaa tagctcacat
     2161 caaggtaacc aaattgacct ttaaagctaa ctccaatctc atgattagtc gatttttctg
     2221 gctctaactg gtggctacgt tgcgcgcgtt gcacatattc gttatcttta agcccaatat
     2281 gatcacgttt accataaagt tcatagaatg caggcactct aaaaccgttt gaaatgcgat
     2341 aagaaagcga tacaaactct gttggtttaa gcgtaatccc accattccaa gaccaatttc
     2401 gataagttcg gctaagtgtc cacggatcat cagatttaaa tcgatgttga tcaaaacgca
     2461 cccctaatcc caaatccaca tactcgctta tcactagatc gcggaagcta acaaaatggc
     2521 tatcgccttt aattttacgc ggttcacagt ttaagatgtc gccgcgtgta ttattacaca
     2581 aagataccgt ttcaatactg cgtggatcgc ggcgataaat atatggatta tctaaacgcc
     2641 ctctaccgcg gtagctggta taaccgcctt tggtatattg ggcagtcata tccccatgat
     2701 ccataagcga attaaatcga tcaaagccca accctaaatt cagtttgtgg gtttgcttaa
     2761 atacgccttg accagcattt agcgctttat caaattctaa atgaatgaca cgatgctttt
     2821 cttggtaatt attacgctca gttcgataca tagaccaaga tttatccaaa gtcgggcggc
     2881 aatttttatc taccacagga taatcgctac aatgcaagcg atgtagccgg ctatatagtt
     2941 caatatcttg tttatccgca ctgagtttaa tgctatccaa ccagcgatta ttctctggtt
     3001 tatatttata ggtgaatcct aaacgacgtt tgtggtgacg ttcatcaaaa aacttcacat
     3061 ggctatagcg caacccataa gggatccttg gcttgaacac taagccatct aaaatattat
     3121 ccccttcata aacatagttc ctaagtgata agttaatatc gtcttttgta tagtaagctg
     3181 gcgtttgcat atcacggata tcgtagcgtt gttttgtatc ttctaagatt gcgccaagat
     3241 aatgagacga gttaaagtga tagccaaact tcataaaaac agaattactc ttgtaatcta
     3301 aagggtttgg tgcaatgcga tctttaccgg tatattcttg ggctgagagc tgctcagtgc
     3361 gataaggaat ctgctcaagc tgtttgcgct cttcaggcgt atattccgga aatgttctca
     3421 ctgggaaatt atcgcggttc aacttaaccc ttgcacgagg agtacaatct aatgttgggc
     3481 aagtatcttc cacaataaaa aaagatcctc caggagcatt ctgtgcggaa tttgggtaaa
     3541 gatcgtagcg attttcaaag ccggttatac gccgaatatt atgttttaat ttatttgcct
     3601 cggaatgaat tttggtctct ttaccgtgtc ggtgagttgc aataacaagt gcttcaaaac
     3661 cacccgcctc accagccgct gcgatagact gtaaaaaatg gctatttttg ctggcataag
     3721 aggtcttact atctaagccc caatgctgcc cctctttaat aatatcctgc gcatctttag
     3781 tacgaaaacc aatagcacca cctagcgcac cagagccata ttccgcagaa cttgctcctt
     3841 tgcttaactc aattgaacga atgttttcat actcaatctc attaattgca ccaccattag
     3901 catctgaacc tagcgtatga taatgctgcg cttgtggtag cccatcaaca agtaagctga
     3961 cacggttttt atctacacct cgaatggcat agccactact tgcaccgcga ccttgttcca
     4021 ccaccgaaat accagggtca tagcgagtta aatcacgaat accaagaatt tgatttttac
     4081 tcatttcgtg ataatttttc actactttcc ccaagccagt tacttcgttt tgacgttcgt
     4141 gagcataatg gctctctgtc acaataactt catccagaac agctagatcg ttattttctt
     4201 ctattttttt attttcagtc gcagcaccgt atgaatgaga aagagcaaat aacactgtta
     4261 aggcaacagg tgaatagcga aaatgatgat atttcattat cattagatag ggtctccttt
     4321 atttaaattt tgcaaatttt tataaaaaat tgcccgcttg ctatctacaa ccagcaaagg
     4381 ggaattatga ttatttttct atttgacgtt ttccgccgaa tgtaatactg actctatctt
     4441 tatccgtttc tgcactatgt acatgtacaa taccacctaa ttccgtcgcc ttagggccat
     4501 aaaagccccc ttcaaattga gtatttatat gcactaccgt gccaccattc gtacttttcg
     4561 gatcaagatt aaaaccagaa ttgcccgttt tggctgtgcc tgcaaaacca ttccctttca
     4621 gattgccttc aagtgtcagc attgggcgtt cttcaacacc atcattagca atcagcttgc
     4681 cattaatttt tttattgaca aaatctacat cgaatagtga acgagtacca ctttcgctgt
     4741 tacttggcga ttcagcccct gccgagccag atttactgta cattaccccg tcccaagtac
     4801 ctcgatattt tactgtccct gttggcaaat ctgccacagc tgtacgttct cctactaaat
     4861 attggtgagc agtatcacta ttatttccct cgctataagt cccaaatttg acataatcta
     4921 aattattaca gcagactgaa actcgatacg ttttatcatc aatagtacgg gtaaccaaat
     4981 cataaaattt catctcggca aagctttttt tgccttccgc aataagtgga atctgcttat
     5041 tgttaataat caaatgtgtc gcattcccga aagtatccat ctcagattta tttaaatctt
     5101 taagtttaat tttgaaagca tcaaaggcag attcactatc atctttttta gcatctcgtt
     5161 tgccagcaaa aacaacaaat accgacttat catcagctaa gaatttaccg gcaagttctt
     5221 gagccttccc accaaaaaat ccaccttcaa gtgtcgtaga gcttttacca aaataaggat
     5281 catcggtatt ttttgcgttt gctttaccag aaaagcgatt acctttaatt tttgcatcaa
     5341 tatcgtaaat tgttgtaatt ttttgctctt tgctacgact aacataccca ttacgaacca
     5401 atgttccagt taaagtttta ttagcaaaat cagccgtaaa ttctcctgta tgccccattg
     5461 gtttttcaga atcatcaaca ttaatatcgt aactattttc cggtgtggcg ccaatattga
     5521 tgcctgcgga attagaaaaa tatttactat ctctcccttt tctcgcatcg gtagtaaaat
     5581 cccaatatcc tttataagta gctttttgag taggtattgc ttttgccggc tctataccta
     5641 aatagtaaac atacccatgt gcacctgttc tcaaaatttc tttaggcttt atttcaggtt
     5701 ttgcaccaga atgcagaaca tagccagaac gaacaaaatt aaaatctcta gtatacaact
     5761 tatgatttct atcatgagta tggctaaatc catcagcact actaccgtac gctttaacct
     5821 cttcttcata cggaattttt gtcagatctc cagtaatctc ttttatatca ccaatagggg
     5881 ctacatcttc cttcccctgc ggaaagagat tacgacgcgg aattttggct gaaaaaccaa
     5941 accccggctg caataaagct tcagtttcag aagcgcttac tgtacgtctt gcgttactat
     6001 tatcatcttg taaacttggc tttttggggg tagtttgcgt ttgagattca actttggcag
     6061 attgaacatc aaagcttcca ccatttgagg aacaagcagc aagtagcgcc gcattaagca
     6121 gtacaaaact act
//
LOCUS       DANMBQ010000134         6108 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.135, whole genome shotgun sequence.
ACCESSION   DANMBQ010000134 DANMBQ010000000
VERSION     DANMBQ010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6108
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.135"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(27..404)
                     /locus_tag="PXE92_002222"
     CDS             complement(27..404)
                     /locus_tag="PXE92_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor"
                     /protein_id="HDL5761423.1"
                     /translation="MKNPIEIYQSQDGKTQVSVQFDKETVWLSLQQMADIFGRDKSVI
                     SRHLRNIYQEGELEREATVAKNATVQIEGAREVVRLKDYLVKGYALNERRLQERGIEF
                     EQVIGLLSQYTGCLSLVGGRKFA"
     misc_feature    complement(426..548)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(678..1667)
                     /gene="rsmC"
                     /locus_tag="PXE92_002223"
     CDS             complement(678..1667)
                     /gene="rsmC"
                     /locus_tag="PXE92_002223"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HDL5761424.1"
                     /translation="MLSLESEVLERHLALFENKSVLLFGDVRDDFARQLQSRAEKVAV
                     FSSYFDYARHHSEVEFGLECGLSAELAVFYWTKNKQECQFQLLQWLSQCQAGQEMLII
                     GENRAGVRSVEKLLEPFGNIAKIDSARRCGLYHFELQTVPTFDCKKFWKSYRLQDLDV
                     FDLPAVFSSAELDNGTKLLLSTFDKADRLKGKVLDLGCGAGVIGATLKQQFPKIKLTM
                     SDIHAMALESGRRTLAENQLEGEVVASDVFSHINERFDLIVSNPPFHDGVDTAYRAVE
                     ELIFQAKNHLTKGGELRIVANAFLPYPDLLDKAFGKHDVLAKSTKFKVYSART"
     gene            1797..2219
                     /locus_tag="PXE92_002224"
     CDS             1797..2219
                     /locus_tag="PXE92_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HDL5761425.1"
                     /translation="MNRRDLLLQEMGISQWVLTNPQVLKGDAQIRLNNAVKLVVVCEE
                     DHQHSRLFADILRALKLKNSEYQWLTGEQSQRLVFEHSPIFWLIQAEEQAVKMAKSFT
                     NQTAWKNESWQDLAKSTTKRQLWQQIDTFSAQFGEQRD"
     gene            2212..2649
                     /gene="rimI"
                     /locus_tag="PXE92_002225"
     CDS             2212..2649
                     /gene="rimI"
                     /locus_tag="PXE92_002225"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HDL5761426.1"
                     /translation="MIEQIQAEDFEQLFEIEQQAHLVPWSKGTLLNNQGEKYLNLKVV
                     EQNKIVAFAISHIVLDEATLFNIAVAPDFQGKGIGKRLLSELILQLQQRKLTTLWLEV
                     RESNHSARKLYDSLGFNEVTTRKNYYPTPNGSKENAVVMALYL"
     gene            complement(2698..4545)
                     /gene="typA"
                     /locus_tag="PXE92_002226"
     CDS             complement(2698..4545)
                     /gene="typA"
                     /locus_tag="PXE92_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDL5761427.1"
                     /translation="MQNVDISKLRNIAIIAHVDHGKTTLVDKLLQQSGTFGETRGDVD
                     ERVMDSNDLEKERGITILAKNTAINWNGYHINIVDTPGHADFGGEVERVLSMVDSVLL
                     VVDAFDGPMPQTRFVTQKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLGASD
                     EQLDFPIIYASALNGVAGLEHEDLAADMTPLYEAIVKHVQPPQVELDAPFQMQISQLD
                     YNNYVGVIGIGRIKRGSVKPNQAVTIVDSEGKTRQGRIGQVLGHLGLQRFEATEAFAG
                     DIVAITGLGELNISDTICDINAVEALPALSVDEPTVTMFFCVNTSPFCGQEGKFVTSR
                     QILERLNKELVHNVALRVEETSNPDEFRVSGRGELHLSVLIENMRREGYELAVSRPKV
                     IYREEDGKKQEPFEQVTIDIEEQHQGSVMEALGIRKGEVRDMIPDGKGRTRLEYVIPS
                     RGLIGFRNEFMTMTSGTGLLYSTFSHYDDVKPGEIGQRKNGVLISNATGKALAYALFG
                     LQERGKLMIDHGVDVYEGQIIGIHSRSNDLTVNCLQGKKLTNMRASGKDDAIVLTTPV
                     RFTLEQALEFIDDDELVEVTPQSVRIRKRLLTENDRKRASRTTTSTSTH"
     gene            complement(4730..5407)
                     /locus_tag="PXE92_002227"
     CDS             complement(4730..5407)
                     /locus_tag="PXE92_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDL5761428.1"
                     /translation="MSIAENLSQIHQQIQQISEQYQRDNVRLLAVSKTKPVEAIQAAI
                     EAGQRAFGENYVQEAVEKIEFFANRPELEWHFIGPLQSNKTKLVAAYFDWIQTVDRLK
                     IAERLNEQRPADKAPLNVLIQINISDEASKSGIEPDEMLPLAQAISQLPNLKLRGLMA
                     IPKPESEPEQQKVAFRKMQLLFNRLQTEFDDIDTLSMGMSDDMQAAIECGSTMVRIGT
                     AIFGARR"
     gene            5478..6017
                     /locus_tag="PXE92_002228"
     CDS             5478..6017
                     /locus_tag="PXE92_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HDL5761429.1"
                     /translation="MLDLTKIKLVITDVDGVLTDGGMYYTDQGEVMKRFHVHDGLGVK
                     MLQSCGIKVAVLSGGDTALLRKRLEVLKIDLALLGKMEKRSACFELMQQAGVTPEQTA
                     YIGDDTLDLPAFEVCGIAIATRNALDYIKEKADWVLQKAGGEGAFREVSDQILEAQGF
                     GEIFKTADGFLTVAGKMAQ"
BASE COUNT         1692 a         1356 c         1276 g         1784 t
ORIGIN      
        1 tcagtttaat catcagttct ttttgttcag gcaaactttc tgccaccaac aaggctaaga
       61 caaccagtgt attgactgag caaaccaatc acctgctcaa actcgatacc tcgttcctgc
      121 aaacggcgtt cgttaagggc atagcctttc accagatagt cttttaggcg aacgacttct
      181 ctagcacctt caatttgaac tgttgcattt tttgcaacag ttgcctcacg ctccagttca
      241 ccttcttggt agatatttcg taagtgccga gaaataacag acttatctcg tccaaaaata
      301 tctgccattt gctgtaaact tagccacacc gtttccttat caaactgcac ggaaacttgg
      361 gttttgccgt cttggctttg gtaaatttca atcgggtttt tcatattatt cccaaatttt
      421 atctataaaa aaatctctcg aaagttgcct tccgagagat ctttattgat ttgctacact
      481 tgctcggaag agttatcttc cgcacacacc aaatgcccga aagatatcag gttaaagtgt
      541 ggtggtgatg taaagtgtag tttaaattca ttgcattact ccaaaacagt atgaacagaa
      601 tttacgtcaa gccggcagaa atatcaagca cttttttaag caaataccgg cttttttata
      661 accgtttgtt ctgcctatta tgttcttgcg gaatacacct taaacttggt ggattttgcc
      721 agtacgtcgt gtttgccgaa ggctttatcg agcaaatctg ggtaaggcaa gaatgcgttt
      781 gcgacaattc gcagctcacc gcctttggtt aggtgatttt tagcttggaa aatcaactcc
      841 tccaccgctc ggtaggcggt atcgaccccg tcgtggaatg gtgggttgga gacaattaaa
      901 tcaaaccgtt cattaatgtg agagaacaca tcacttgcta ccacttcccc ctctaactga
      961 ttttccgcca aagtacgtct gccggattcc aacgccattg cgtgaatatc gctcatcgtc
     1021 agtttgattt tcggaaattg ttgtttgagc gttgccccaa tcacgccagc cccacagcct
     1081 aaatctaaca ctttgccttt tagcctgtct gctttgtcga aggttgaaag caataatttg
     1141 gtgccgttat ccagctccgc cgagctaaaa accgctggta gatcgaacac atctaagtct
     1201 tgcaagcggt aggatttcca gaattttttg caatcgaatg tcggcacggt ctgtagctca
     1261 aaatggtata aaccacaacg gcgtgcagag tcgattttgg caatattgcc gaacggttcg
     1321 agcagttttt ctaccgaacg aacaccagct cggttttcgc cgataatcaa catttcttgc
     1381 cctgcttggc attgcgacag ccattgtagc agttggaatt ggcattcctg cttgttcttc
     1441 gtccaataaa acaccgctaa ctcggcactc aaaccacatt ctaagccaaa ttcaacctca
     1501 ctatggtggc gtgcgtaatc aaaatagcta ctgaataccg caaccttttc cgcacgagat
     1561 tgcagctggc gggcaaaatc atctcgcaca tcgccaaata ataacaccga cttgttttca
     1621 aataacgcca aatggcgttc aagtacttcg ctttctaaag agagcatttt cttaccttat
     1681 ctaaaaaatt tagcgtgaat ataccgaatt taagtacaga aatcttgaat tttttgaaaa
     1741 aagtttctgt tcaagcggag ttttgatact atttgcaaaa tttgatgagg ttttaaatga
     1801 atcgtcgtga tttactgtta caggaaatgg gtatttcgca atgggtgcta accaatcccc
     1861 aagtgctaaa aggcgatgct caaatccgcc taaacaatgc ggtaaaattg gtggtagtgt
     1921 gtgaggaaga tcaccaacac agccggctct ttgccgatat tctgcgtgct ttaaagttaa
     1981 aaaacagcga atatcaatgg ctgactggcg aacaatcaca acgtttggtg tttgagcatt
     2041 cgccgatctt ttggctgatt caagcggaag aacaagcggt caaaatggca aaaagtttta
     2101 ctaatcagac cgcttggaaa aacgagtctt ggcaagattt agccaaatct acgaccaaac
     2161 gccaactttg gcaacaaatt gatacttttt cggcacaatt tggagaacag cgtgattgag
     2221 caaattcaag cggaagattt cgagcagtta tttgaaattg agcaacaagc ccatttagtg
     2281 ccgtggtcaa aggggacgtt attaaataat cagggtgaaa aatacctgaa tttaaaagtg
     2341 gtagagcaaa acaaaattgt ggcttttgcc attagtcata tcgtgctaga tgaagcaacc
     2401 ttatttaaca ttgcagttgc tcctgatttt caaggcaaag gcattggcaa gcggttactt
     2461 tccgaattaa ttttgcaact gcaacaacgg aaactcacca ccctgtggtt ggaagtgcga
     2521 gaatccaacc attctgccag aaaactctac gattcactcg gttttaatga agttaccacc
     2581 cgcaaaaact attaccccac gccaaacggt agcaaagaaa atgcggtggt aatggcgtta
     2641 tatttgtagg gagaatttaa aaccaaaaga gcgacctcag tcgctctttt ttatcagtta
     2701 gtgcgtgctg gtactggttg tagtacggct tgcacgtttc cggtcgtttt cagttaataa
     2761 acgtttacga atacgcaccg attgtggtgt tacttccact aattcgtcat cgtcaataaa
     2821 ctctaacgct tgttctagag tgaaacgcac cggtgtggtt aaaacgatgg catcgtcttt
     2881 acctgatgca cgcatattgg ttaatttctt accctgtaag cagtttacgg ttaaatcgtt
     2941 tgaacggctg tgaatcccga taatttgccc ttcatataca tcaacaccgt ggtcgatcat
     3001 taattttcca cgctcttgta agccaaataa tgcgtatgct aatgccttac ccgttgcgtt
     3061 agaaattaac acaccgtttt tacgctgacc gatttcgccc ggttttacgt catcatagtg
     3121 gctgaatgta gagtaaagta aaccagtacc tgaggtcatc gtcataaatt cgttacggaa
     3181 accgattaag ccacggcttg ggatcacata ctctaaacgg gtacgacctt tgccgtccgg
     3241 aatcatatca cgcacttcac ctttacggat accaagtgct tccatcactg aaccttggtg
     3301 ttgctcttcg atatcaatcg tcacttgctc aaacggctct tgttttttgc cgtcttcttc
     3361 gcggtagatt actttcgggc gagacactgc taactcgtaa ccttcacgac gcatattttc
     3421 gattaatacc gataagtgta attcgccacg acctgacaca cggaattcgt ctgggttcga
     3481 agtttcttcc acacgcaatg ccacgttgtg gactaattct ttgtttaaac gctcaagaat
     3541 ttggcgtgaa gtcacaaatt taccttcttg accgcagaat ggcgaggtgt ttacgcagaa
     3601 gaacatcgtt accgttggtt catcaacgct taatgctggt aaagcctcta ctgcgttaat
     3661 atcacaaata gtatctgaaa tatttaattc gcctaaacca gtaatcgcaa caatatcgcc
     3721 agcaaaggct tctgttgctt caaaacgttg taaacctaaa tgccccaaca cctgaccgat
     3781 acgaccttgg cgagttttgc cttcgctatc tacaatcgtt accgcttggt taggtttcac
     3841 cgaaccacgt ttgatacgtc caataccgat aacgcccaca tagttgttgt agtctaattg
     3901 cgaaatctgc atttggaatg gtgcatctaa ttccacttgt ggtggttgaa cgtgtttgac
     3961 aatcgcttca taaagtgggg tcatatctgc cgctaggtct tcgtgttcta agcctgctac
     4021 accatttaag gctgaagcgt agataattgg gaaatctaac tgctcatcac ttgcacctaa
     4081 atttacaaac aagtcgaaca cttgatccac cacccaatca gggcgagcac ctgggcggtc
     4141 aactttattg atcactacga ttggttttaa accgtgagcg aacgcttttt gcgtgacgaa
     4201 acgggtttgc ggcatcgggc catcaaaggc atcaaccact aacagaacag aatctaccat
     4261 tgaaagtaca cgctcaacct caccaccgaa gtcagcgtgc cctggggtat ctacgatatt
     4321 gatgtgataa ccattccagt taattgccgt attttttgca agaatggtaa tgccacgctc
     4381 tttttcaaga tcgttggaat ccattacacg ctcatcaacg tcaccacgag tttcaccaaa
     4441 ggtgcctgat tgttgtaaaa gtttatcaac caaggtggtt ttaccgtggt caacgtgggc
     4501 aataattgca atgttacgca attttgaaat atctacattt tgcattggaa tatctttaag
     4561 ttaagtcaaa ataaaaactc tcgcccatca aaactggcga gagtcaagaa attaggaggc
     4621 gtaattatac agactttttc cgctgttggc tacaaaacaa gcggtggaat ttgcaaagtt
     4681 tttggcgaat ttgaccgctt gtatcagctt tatgtaaaaa ctcagctggc taacgtctcg
     4741 ccccaaaaat cgcagtccca atccgcacca ttgtcgagcc acattcaatc gccgcttgca
     4801 tatcgtccga catccccatt gaaagggtat caatgtcgtc aaattctgtt tgcaagcggt
     4861 taaaaagtag ctgcattttg cgaaaggcaa ctttttgttg ctctggctcg ctttctggtt
     4921 tgggaatggc cattaagccc cgcagtttca aattcggtaa ttgagaaatc gcttgggcaa
     4981 gtggtagcat ttcatctggt tcaatgcccg atttcgaggc ttcatcgctg atattaattt
     5041 gaatcagcac gttgagcggg gctttatccg ctgggcgttg ttcgtttaaa cgctcggcaa
     5101 tttttaatct atccaccgtt tgaatccaat caaaataggc agcgaccaat ttggttttat
     5161 ttgattgaag tggcccaata aaatgccatt ctaattcggg gcgatttgca aaaaattcga
     5221 ttttttcgac cgcttcctgc acataatttt cgccaaatgc acgctgccct gcctcaatcg
     5281 ccgcttgaat cgcctcaact ggtttagttt tggagacggc taacaaacgc acgttatctc
     5341 gttgatattg ttcggaaatt tgctgaattt gttgatggat ttgcgataaa ttctcggcaa
     5401 tcgacatttc ggttcctttg gtaaacggag gtaaaaaagc tataatggta aaatcatacc
     5461 atatttgagg caaaaaaatg ttagatctca ccaagattaa attagtgatt accgatgtgg
     5521 acggcgtgct aaccgatggc ggaatgtact acaccgacca aggcgaagta atgaaacgtt
     5581 tccacgttca cgatggttta ggcgttaaga tgttacaaag ttgtggcatt aaagtggcag
     5641 tactctcggg cggcgatacg gctttgctcc gcaaacggtt agaggtgctg aaaattgatc
     5701 tcgctttgtt aggcaaaatg gaaaaacgct ccgcctgctt tgagctaatg cagcaagccg
     5761 gtgttacccc tgagcaaacg gcttacattg gtgatgacac cttagattta ccggcttttg
     5821 aagtgtgtgg cattgcgatt gcaacccgta acgccctcga ttacatcaaa gaaaaagcag
     5881 attgggtatt gcaaaaagcc ggtggtgaag gggcgtttcg tgaagtctcc gaccaaattt
     5941 tggaggctca aggattcggt gaaattttta aaaccgcaga tggtttttta acggtagcgg
     6001 ggaaaatggc tcagtagact cttcaagcag ttaaatttca ttttattttt gcgatctgca
     6061 tcgaaaaaat gtatttctaa tctgattttc aaattactgt ttgctaaa
//
LOCUS       DANMBQ010000135         6074 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.136, whole genome shotgun sequence.
ACCESSION   DANMBQ010000135 DANMBQ010000000
VERSION     DANMBQ010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6074)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6074)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6074
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.136"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            184..402
                     /locus_tag="PXE92_002229"
                     /pseudo
     CDS             184..402
                     /locus_tag="PXE92_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014390712.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
     gene            complement(454..669)
                     /locus_tag="PXE92_002230"
     CDS             complement(454..669)
                     /locus_tag="PXE92_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761430.1"
                     /translation="MQTEKRGRGRPKSGLTLQELQAKSDAKRGVRLKSFKFHEDFIAQ
                     LEQLAEQHGISQTQVIVQAVEQFSKGA"
     gene            1214..1915
                     /locus_tag="PXE92_002231"
     CDS             1214..1915
                     /locus_tag="PXE92_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761431.1"
                     /translation="MSTQISTQTISFNNQALITFEQNGTHYTAMKPICENIGLTWHAQ
                     YERIKRDEILSQGILIIRIPTNGGDQQMICLPIEYLNGWLFGIDINRCKPEIRETLIK
                     YKKECYQALHDYWFKGKAERSQIAPIVEPKIPMELTKKEWLRFASMWYALYNSLEVLA
                     TLEKPLRAIGSPFGATAYTHATEYQTTLGVMKRILEPMLADFEVDPFEEAHYHKALTT
                     LRQYQPKGLGGLVRI"
     gene            2169..2345
                     /locus_tag="PXE92_002232"
     CDS             2169..2345
                     /locus_tag="PXE92_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761432.1"
                     /translation="MTEEDKEYLQTKIENEGFEYAFVSYSDFEEVQDEKFHGLRKAYL
                     KARSELAEYIDIED"
     gene            2433..2816
                     /locus_tag="PXE92_002233"
     CDS             2433..2816
                     /locus_tag="PXE92_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761433.1"
                     /translation="MHIEDKIAWWLANGETGVSSKTMAFYLGYGIRPKIEGYPHDVSD
                     FRRCFLLLETVPFLRNRIEKMAELGKVWAALAKEWHTLEALYNEEEDQIRCPKTYAKL
                     REILEANEENVVRIGNVSISIGSTT"
     gene            2866..3087
                     /locus_tag="PXE92_002234"
     CDS             2866..3087
                     /locus_tag="PXE92_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HDL5761434.1"
                     /translation="MNIYTDFLSREEIEFITQCKQKNLIKKQLNIMGIPFKENANGFP
                     VVRRDYAQAKQRKPIATNDSDWVSNAFKA"
     gene            3109..4149
                     /locus_tag="PXE92_002235"
     CDS             3109..4149
                     /locus_tag="PXE92_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5761435.1"
                     /translation="MARPRKYENNGLPQNLLCRRRKRANGSIVEYYFYVLADGKERSL
                     GTNKHEAILEAAKLNFENSRKSPIVLFIDVAKRYELEVVPTKKAKNTRQSNLQAIHWL
                     CKFFGNPPAPLEKIEPKHISQYLQWRKDTPAVANIEVGLFNTIWNMAREWGYTALPSP
                     SQGVKKFPTKYREVYVEDYILDKIYEFADERMADIIETAYLLGQRPIDICNIHRSHIY
                     DGILHITQQKTGKKVRFEISGRLKEILDKRLGYESDWIFTNKWGKKLKRRSLGDHFKE
                     IRERAMKAYPELADEIAKVQMRDMRAKAATDISLMTTDEQAQKQLGHTSKRMTHHYIR
                     KDKILKPTDEIT"
     gene            complement(4308..4595)
                     /gene="rplY"
                     /locus_tag="PXE92_002236"
     CDS             complement(4308..4595)
                     /gene="rplY"
                     /locus_tag="PXE92_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HDL5761436.1"
                     /translation="MSFKFEAEVRSAQGKGASRRLRHNGQVPAIIYGGNAEPVSIILD
                     HDKVNNAQVHDSFYNEVLTIVVAGKEEQVKVQAIQRHPTKPKLVHLDFKRA"
     gene            complement(4747..6015)
                     /locus_tag="PXE92_002237"
     CDS             complement(4747..6015)
                     /locus_tag="PXE92_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme"
                     /protein_id="HDL5761437.1"
                     /translation="MSDLKQQALDFHEFPIPGKISVTPTKALDTQHDLALAYSPGVAE
                     PCLAIEKDPSASYRYTARGNLVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAG
                     IDVFDIEINETDPEKLVEIIASLEPTFGGINLEDIKAPECFYVEQKLRERMGIPVFHD
                     DQHGTAIITGAAVINGLQVVGKAISEVRLVVNGAGASAIACTNLLRSLGVKKENITMC
                     DSKGVIFQGRGDKMDETKQFYAIEDNGWRTLADAVANADVFLGCSKGGALTQEMVKTM
                     AKDLLILALANPVPEITPAEAKAVRPDAIVCTGRSDFKNQVNNVLCFPFLFRGALDVG
                     AKTINEEMKMAAAHAIAELAKEPVPFEVISTYGELSFGPEYIIPTPFDPRLIVNVSIG
                     VAKAAIQSGVATRPITDWEAYAEQLKKLVA"
BASE COUNT         1990 a         1288 c         1144 g         1652 t
ORIGIN      
        1 ccttatattt ttttatgaga ttactacgaa agcgttttac tgtcagaaca aaaatttatt
       61 ttttcgatgc agatcgcaaa aatagatatt gaggcttgac accgccaaac ttcggattaa
      121 gataaccgca ctttcaagcc gtccaccaac ggcttttttt gtacctaaaa acggagaaac
      181 gaaatggcaa atagcgtaat gattgtacaa ggcgtggagg tcaaagtaac cgctcgtgat
      241 ggtgaggatt acatcagcct aactgatatg tgcaaagctt ttggagacag cgaccagctc
      301 attaaaaact ggcttcaaaa taaaaatacc attgaatttc ttcaagtttg ggaagagctg
      361 aataatccaa attttaattt ggtggaatta caccaaatta aatgcaacaa ctaattaaaa
      421 acatcgaaca gtgaagggta ggtttatagg ggcttacgcc ccttttgaaa actgctcaac
      481 cgcttgaacg attacctgtg tttgcgaaat gccgtgttgt tctgcaagct gttcaagttg
      541 agcaataaaa tcttcgtgga acttgaatga cttcaatcgc acaccacgct ttgcatcgct
      601 ttttgcttgt aattcttgaa gcgttaaacc tgatttaggg cgaccacgac ctcgtttctc
      661 tgtttgcatt gtcaattcct tgttgatttt taatacggaa cgttatatta tttaggaact
      721 gcctagcaga gatggcgttc tctgctagga cttttagctt tctaatctaa taagctggcg
      781 tgcttattaa gattaagatc actaggatta acaacttaag atacataatc cagttcctga
      841 tgtttgccgc tctcttcaag ggcggcttct tcattttcag accctttccg aaaacaagat
      901 tattttaata cataccaaat aaaacgcaag ctatttttta gtatttatta aaataatttt
      961 atttgacaac cgccaaactt taacttacta ttccgcccaa ggtgtcgaaa cctcatactc
     1021 taaggcggat agttcactaa tcgccactag gcgatttttt tatatccgta atcctgacta
     1081 tgtcgggagg gcgactaata caagaccgaa aggaaatacg tccagccctt accttagagt
     1141 gggttttcga acctcccgac gccactgtcg aaagtggctt gttttaaaca aatagactct
     1201 aaggattacg actatgtcaa ctcaaatttc tactcaaacc atttctttca acaaccaagc
     1261 cttaatcaca ttcgagcaaa acggcacaca ttacaccgca atgaaaccga tctgcgaaaa
     1321 tatcggcttg acttggcacg ctcaatacga acggatcaaa cgagatgaaa tcctttcgca
     1381 gggtattctt atcataagaa tacctacaaa cggtggcgat caacaaatga tctgcctccc
     1441 aattgaatac ctcaacggct ggctcttcgg cattgacatc aatcgctgca aacccgaaat
     1501 cagagaaacg ctcatcaaat acaaaaaaga gtgctaccaa gccctgcacg attactggtt
     1561 caagggcaaa gcggaacgtt cacaaatcgc cccgattgtc gaacctaaaa tcccaatgga
     1621 gctaaccaaa aaagaatggc tacgtttcgc ttcaatgtgg tacgccctct acaacagcct
     1681 tgaagtactt gctacgttag aaaaaccgtt gcgtgctatc ggttcgccgt ttggggcaac
     1741 cgcctacact cacgccaccg agtatcaaac cacgcttggc gtaatgaaac ggatacttga
     1801 accgatgtta gccgacttcg aggtcgatcc gtttgaagaa gctcactacc acaaagccct
     1861 aactacctta aggcaatacc agccgaaagg cttaggcggc ttagtccgaa tttaatttgc
     1921 aaaaaaatca cacaatccga ccgcttgtga aacatcaagc ggcggtttcc tgcacccaaa
     1981 attcaaggat taggcgatga aatacgcaaa aatcatactc tttttaaccg cctttgcagt
     2041 tgctgccgac tacttagagt tacacaacga ctgcgatggc aaaccatgca ctatcgcaca
     2101 gcgataatgc ttccccgacc ctgcccgtgc agtgtttatt tttatccact ctcaatagga
     2161 gaaacgaaat gacagaagaa gacaaagaat atcttcaaac taaaattgaa aacgaaggtt
     2221 ttgaatacgc tttcgtcagt tatagtgact ttgaagaagt ccaagatgaa aaattccacg
     2281 ggcttcgcaa ggcttattta aaagctcgaa gtgagttagc ggaatatatt gatattgaag
     2341 attaaccact gatgaactgt tcattgaaca aatgaacact tgacaaccaa ccgcttgtag
     2401 ctaactgcaa gcggttaatt tttggaggaa aaatgcacat agaagacaaa atcgcttggt
     2461 ggcttgccaa tggagagaca ggggtaagca gtaaaacaat ggctttttac cttggttacg
     2521 gaataagacc aaaaatagaa ggctacccac acgatgtatc ggatttcagg cgttgctttc
     2581 tgttgttgga gacagtccct tttttgcgaa ataggattga aaaaatggct gaacttggga
     2641 aagtttgggc tgcacttgca aaagaatggc acacattaga ggctctctac aacgaagagg
     2701 aagatcaaat aagatgcccc aaaacctatg ctaagttgag agaaatccta gaagccaacg
     2761 aagaaaatgt tgtccgcatc ggtaatgtga gcatttcgat aggttcaacg acttaacgat
     2821 tatttaacca aatccctcta aatgaggggt ttatttggag agaatatgaa catctacact
     2881 gacttccttt ctcgtgaaga gattgaattt attactcaat gcaagcagaa aaatctaatc
     2941 aaaaaacaac tcaacattat gggcattcca tttaaagaaa atgcaaatgg attccctgtt
     3001 gtccgccgtg attatgctca ggctaaacag cgtaaaccta ttgcaacgaa tgattctgac
     3061 tgggtatcaa atgcatttaa agcgtaaatt gagaagaagg aggcacttat ggcacgccct
     3121 cgaaaatatg aaaacaacgg attgccacaa aacctactct gccgccgcag aaaacgagca
     3181 aacggaagta tagttgaata ctacttttac gttcttgccg acggcaaaga aaggtctctc
     3241 ggtacaaaca aacacgaagc aattttagaa gcagccaagc taaattttga aaatagtaga
     3301 aaatccccaa ttgttttatt tattgatgtg gcaaaacgct atgaattgga agttgttcca
     3361 accaaaaaag ccaaaaacac tcgtcaatct aatttacagg ctattcattg gctatgtaaa
     3421 ttctttggta acccacctgc accgctcgaa aaaattgagc caaagcacat cagtcaatat
     3481 ttacaatgga gaaaagacac gccggctgtt gctaatattg aggtaggttt atttaacaca
     3541 atttggaata tggcaagaga atggggatac actgctcttc caagcccatc acaaggtgta
     3601 aaaaaattcc cgaccaaata tcgtgaagtt tatgtagagg attatatcct tgataaaatc
     3661 tatgaatttg cagatgaaag aatggcggat attatcgaaa cagcctattt gctgggacaa
     3721 agaccgattg atatttgtaa tatacaccgc tcacacatct atgacggtat attgcatatt
     3781 actcaacaga agacagggaa aaaagtgaga tttgaaatta gtggtcggct aaaagaaatt
     3841 ttagataaaa ggttgggata cgaatcagac tggattttta ccaataaatg ggggaaaaaa
     3901 ttaaaacggc gaagtttagg cgatcatttt aaagaaataa gggagagagc aatgaaagca
     3961 tatcctgaac ttgctgatga aatcgctaaa gtacaaatgc gtgatatgcg tgccaaagca
     4021 gccaccgata tttccctaat gacaaccgat gaacaagctc aaaaacaact tgggcataca
     4081 tcaaaaagaa tgacacatca ttacatcaga aaagacaaaa tcctcaaacc taccgatgaa
     4141 atcacctaaa aataaagccc ttttgccaaa tacaaaagag ccatttactc acctaaaatc
     4201 cgttccgaaa ctattttgta aataattgat tttattgacc taaaaaacta taaaatcgca
     4261 aaaagtttcg gaacagaaaa cagcgttaaa cccttgtaaa tcaaggatta agcacgtttg
     4321 aagtctaagt gaactaattt tggtttagtt gggtggcgtt gaattgcttg tacttttact
     4381 tgctcttctt tacctgcaac aacgatagtt aatacttcgt tatagaatga atcgtgaact
     4441 tgtgcgttgt tcactttatc gtgatctaaa atgattgata caggctctgc attaccaccg
     4501 tagatgattg caggaacttg accattgtga cgcaggcggc ggctcgcacc cttaccttgc
     4561 gcagaacgaa cttcagcttc aaatttgaat gacatagttt tattctctta aataaaatgg
     4621 ggaaatcccc gtgaatagaa aaaacagcag gcgacccagc tgtttccgaa aaaatatcgg
     4681 catatccgtc tcgatatgcc aactacgtat tttactgaag ttgcagaaaa atgcaatgta
     4741 aaaatattaa gcaaccagtt ttttcaactg ctctgcataa gcttcccaat ctgtaattgg
     4801 tcgagttgct acacctgatt gaattgctgc ttttgctaca ccaatcgaga cattcacgat
     4861 caaacgtgga tcaaatggcg ttggaataat atattccggg ccaaacgata attcgccata
     4921 agttgaaata acttcaaacg gcacaggttc tttagccaac tctgcaatcg catgggctgc
     4981 tgccattttc atttcttcat taatggtttt tgccccaaca tctaatgctc cacggaataa
     5041 gaacgggaaa caaagcacat tattcacttg gtttttaaag tctgaacgac cggtacatac
     5101 aatcgcatct ggacggacag ccttcgcttc agcaggtgta atttccggca cagggttcgc
     5161 taaagcaaga attaatagat cttttgccat tgttttaacc atttcttgcg ttaaagctcc
     5221 gccttttgaa caacctaaga aaacatctgc attcgcaacg gcatctgcca atgttctcca
     5281 accattatct tctattgcat agaattgttt ggtttcatcc atcttatcac cacgaccttg
     5341 gaaaataacg cccttagaat cgcacattgt gatattttct tttttcacac ctaatgaacg
     5401 gagtaagtta gtacacgcaa tcgctgatgc tccagcaccg tttaccacta aacgtacttc
     5461 tgaaattgct ttacctacca cttgtaatcc gttaatcacc gccgcaccgg taataattgc
     5521 cgtaccgtgt tgatcatcgt ggaacacagg gattcccata cgttcacgta atttttgctc
     5581 tacataaaaa cattcaggtg ctttaatatc ttccagatta ataccaccaa aagtcggttc
     5641 taacgatgca ataatctcca ctaatttctc cggatcagtt tcattaattt caatatcaaa
     5701 cacatcaatt ccggcaaatt tcttaaatag aacacctttg ccttccatca caggcttact
     5761 tgctaaagca ccaatattgc ctaagcctaa cactgctgta ccattagaaa ttactgcaac
     5821 taagttacct cgtgccgtat aacgataaga agctgaagga tctttttcaa tcgctaagca
     5881 aggctcagca accccaggag agtacgctaa agctaaatcg tgctgagtat ctaatgcttt
     5941 agtaggagta acggaaattt ttccggggat tgggaactcg tgaaaatcaa gcgcctgttg
     6001 ttttaaatcg ctcattttag aaaccttata atctataaaa ataaaagtaa tcaataatag
     6061 ccaaagagta gcca
//
LOCUS       DANMBQ010000136         5991 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.137, whole genome shotgun sequence.
ACCESSION   DANMBQ010000136 DANMBQ010000000
VERSION     DANMBQ010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5991
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.137"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..2005
                     /locus_tag="PXE92_002238"
     CDS             <1..2005
                     /locus_tag="PXE92_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDL5761438.1"
                     /translation="DITHYQFIDIGKKLNFSNWRDNLLPASILVGILLLLAIFINRQK
                     DKIKQKLHQINNRLKIVATDSQWNTPLAIFWTLVLCLPSTLMFLAGFVAITYISFENP
                     QEVWTWGLKMAIYWLYFAFLVAMLRPHGIGHIHFNMPQKSNEIFRNILKRSVWIIALL
                     LNTSIFTNLEMGISYDMLGQTMTIFVLILMIWMIVPAFRQAISTYENVTTEEKKESKS
                     ILLTIVKLVLLLAPIILIILIALGYYYTALVIIEHLVDSYFAIITWIIIRNILYRAFS
                     ISSRRLAYRRLQEKREAAEAKTRAKAEQNDENPDGVELPFELKEDSIAVSEVKNQMLK
                     LTDFVLWIGLFVLLYWVWSDLITVALYLDGVTLWQQSVTTEAGIVMESITLLNLLTAI
                     LIIVVMVVLIRNLSGLLEALIFSHFKLSQGTPYTITTLLTYLIIALGAIFAFGTLGMS
                     WSKLQWLLTALSVGLGFGMQEIFANFVSGIIILFERPMRIGDTITIGTYSGTVSKIRI
                     RATTLVDFDGKEVIVPNKAFVTERLVNWALSSTATRIIVQVGVAYGSDLELVKRLLLQ
                     VAEENPKVLKDPQPRAYFLTFGASTLDHELRAYVNDLSDRNPTIDALNTRIHQLFNEH
                     NIDIAFNQLDVYIKNNDTQDEIKVDSKRFEFERPNNITAKEKE"
     gene            2008..3090
                     /gene="aroC"
                     /locus_tag="PXE92_002239"
     CDS             2008..3090
                     /gene="aroC"
                     /locus_tag="PXE92_002239"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDL5761439.1"
                     /translation="MAGNSIGQLFKVTTFGESHGIALGCIVDGVPPNMALSEADLQPD
                     LDRRKPGTSRYTTPRREDDEVQILSGVFEGKTTGTSIGLIIKNGDQRSQDYGDIAEKF
                     RPGHADYTYQQKYGIRDYRGGGRSSARETAMRVAAGAIAKKYLREQFGIEVRGYLSQI
                     GNIKIDPKTVENIEQIDWHAVNSNPFFCPDPVAIEGFDALIRELKKEGDSVGAKLTVI
                     AERVPVGLGEPVFDRLDADLAHALMSINAVKAVEIGDGFAVVEQRGSQHRDEMTPQGF
                     LSNHAGGILGGISSGQPIIAHIALKPTSSITIPGRSVNKNNEAVEVITKGRHDPCVGI
                     RAVPIAEAMMAIVLLDHLLRFKAQCR"
     gene            3109..3936
                     /gene="mepA"
                     /locus_tag="PXE92_002240"
     CDS             3109..3936
                     /gene="mepA"
                     /locus_tag="PXE92_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HDL5761440.1"
                     /translation="MKLLKTLLVSSLAFTATALNATQWEKIKTPVQGKAQSIGGYSNG
                     CIIGAQPLALKGEGYQVIRSARNRYYGHPQLLDYLTHLGKKTKAAGVPTILIGDMGMP
                     AGGRFASGHASHQTGLDADIWFKFGPMDDETARNPAGLATIMVNRSTERVDDSLWNQH
                     HTNLVKLAATDPRVDRIFVNPAIKVKLCQTAGNDRAWLRKIRPWYGHDSHFHVRLTCP
                     ADAASCENQALVPAGDGCGEELYSWFEPKEASGTPKAKVLPTAPVQCQMILSEQGLN"
     gene            4009..5928
                     /locus_tag="PXE92_002241"
     CDS             4009..5928
                     /locus_tag="PXE92_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL5761441.1"
                     /translation="MRLFVAEKPSLARAIADVLPKPHTKGDGFIQCGEHDTVTWCIGH
                     LLEQAEPDVYDERFKMWRMEHLPIVPEQWKLIPKKETLKQFKVVEKLIKKADVLVNAG
                     DPDREGQLLVDEVFGYLNLSAERKSQIQRCLVSDLNPNAVSRAIEKLQKNSDFIPLAT
                     SALARARADWLYGINMTRAYTLQGRWAGYKGVLSVGRVQTPVLGLIVRRDLEIEHFVP
                     KDYFEVLAQIVVPETQERFKAQWQPSKACEDYQDEDGRVLSRPLAENVVKRITDQPAT
                     VTEYQNKIEKETAPLPYSLSVLQMEAAGRYGLSAQAVLDICQKLYETHKLITYPRSDN
                     RYLPTEHFNDRFKVMAAIAHHLPEYQQKPEVIDATIRNRCWNDKEVEAHHAIIPTARQ
                     GTVHLTENEKRVYQLIARQYLMQFCPDAEYRKSKIGLEIAGGSFVAQARNLVIAGWRA
                     LLGKEDSLDDAEPLLPIVKKGQILHCEKGEIVSKKTQPPRHFTDRSLLSAMTGIARFV
                     QDKELKKILRETDGLGTEATRAGIIELLFKRGFLIRKGKNIHSTEAGRILIQALPDSA
                     TQPDMTAHWEMQLNQISKKETSYQQFMFDLNQQLPHLLQSPNRQVLQNLAKITPLASG
                     NKPRYFKKRTQTAEN"
BASE COUNT         1774 a         1312 c         1315 g         1590 t
ORIGIN      
        1 cgatattacc cactatcaat ttattgatat tggaaaaaaa ctcaattttt caaattggcg
       61 ggataattta ttacctgcaa gtattttagt cggaatttta ttgctattag ccatctttat
      121 taatcgccaa aaagataaaa ttaaacaaaa attacaccaa attaataatc gactaaaaat
      181 tgtcgccaca gatagccaat ggaacacccc tcttgctatt ttttggacat tagtgctttg
      241 cctgccaagt acactaatgt tcttagccgg atttgttgct atcacttata tttcatttga
      301 aaatcctcag gaagtctgga cttggggatt aaaaatggca atttattggc tgtattttgc
      361 ctttttagtg gcgatgctac gcccgcacgg cataggacat attcacttta atatgccaca
      421 aaaaagtaat gaaatcttcc gtaatatttt aaaacgttcg gtatggatca ttgctttatt
      481 actgaacacc tctattttta caaacttaga gatgggaata tcttacgaca tgcttggaca
      541 aacaatgact atttttgtcc ttatattaat gatttggatg attgtaccgg catttaggca
      601 agctatttct acctatgaga atgtcacaac agaagagaaa aaagaatcta aaagtatttt
      661 actcactatt gtcaaattag tgctactgct tgcccctatc attcttatca ttctgattgc
      721 attgggctat tactatactg cactggtgat cattgagcat ttagtagatt cttattttgc
      781 gatcattact tggattatta ttcgtaatat tctctatcga gcattctcta tttcatcacg
      841 ccgtctggct tacagacgtt tacaagaaaa aagagaagca gctgaagcca aaacacgagc
      901 taaagcagaa caaaatgatg aaaacccgga cggtgtcgag cttccttttg agctaaaaga
      961 agactctatt gccgtaagcg aagtcaagaa ccaaatgttg aaattaactg attttgtgct
     1021 ttggattggc ttatttgtgc tgctttactg ggtttggtcg gacttaatta ctgttgcact
     1081 ctacctagac ggcgttacct tatggcaaca aagtgttaca acagaagccg ggattgtaat
     1141 ggaatccatt accctgctga atttactcac tgctattctg attattgtgg taatggtggt
     1201 actcattcgg aacttatccg gtttacttga agccctgatt ttctcgcact tcaagttatc
     1261 gcaaggtaca ccatacacaa ttaccacact cttaacctat ttgattattg cgttaggggc
     1321 aatctttgcg ttcggtacat tagggatgtc ttggagcaag ctccaatggc tactaactgc
     1381 actttctgtc ggtctgggtt ttggtatgca agagatcttt gcaaacttcg tttcagggat
     1441 tatcatcttg tttgaacgtc caatgcggat tggcgacacc attaccatcg gcacttacag
     1501 cggtacggtt tccaaaattc gtattcgtgc cacaacctta gtcgattttg acggcaaaga
     1561 agtgattgta ccaaacaaag cattcgtaac cgaacgcttg gtgaactggg cattaagcag
     1621 caccgcaacc cgcattattg ttcaagtcgg cgtggcttac gggtctgatt tagaattagt
     1681 caaacggctg ttattacaag tggcggaaga aaatccgaaa gtcttgaaag atccacaacc
     1741 aagggcttat ttccttacct ttggtgcaag cactttagat cacgaattaa gagcctatgt
     1801 gaacgattta tctgatcgta acccaactat tgatgcacta aatacacgca tccaccagct
     1861 ctttaatgaa cataatattg atattgcatt taaccaatta gatgtttata tcaaaaacaa
     1921 cgatacacaa gatgaaatta aagtagattc aaaacgcttt gagtttgaac gaccaaataa
     1981 cataacagca aaagaaaagg aataacaatg gcaggcaaca gcatcggaca attatttaaa
     2041 gtgaccactt tcggcgaatc tcacggtatt gcattaggct gtatcgtaga tggcgtaccg
     2101 ccgaatatgg ctttaagcga agcagattta cagccggatt tagaccgccg taaacccggt
     2161 acttcacgct acaccacgcc tcgccgtgaa gatgatgaag tgcaaatttt atcgggagtc
     2221 tttgaaggca aaacgacggg aacaagcatt ggtttaatca ttaaaaacgg tgaccaacgc
     2281 tcacaagact atggcgacat tgccgaaaaa ttccgcccgg ggcacgcaga ttatacctat
     2341 cagcaaaaat acggcattcg agattaccgt ggcggtgggc gttcttctgc tcgggaaacc
     2401 gcaatgcggg ttgccgccgg ggcgattgcc aaaaaatatt tgcgtgagca atttggcatt
     2461 gaagtgcgag gctacctctc acaaatcggc aatatcaaaa ttgacccgaa aaccgttgaa
     2521 aatattgaac aaattgattg gcacgcagtc aatagtaatc ctttcttctg ccccgatccc
     2581 gttgcgattg aaggctttga tgccttaatt cgtgagctga aaaaagaggg cgattcggtg
     2641 ggggcaaaat taaccgtgat tgcagagcgt gtacctgtag ggttaggcga acctgtgttt
     2701 gaccgcctag atgccgacct tgcccacgcc ttaatgtcga tcaacgccgt gaaagcggtg
     2761 gaaattggcg atggttttgc agttgtggaa caacgtggta gccagcaccg agatgagatg
     2821 acgccgcaag gctttctctc taatcacgcc ggcggaattt taggtggtat tagctccggt
     2881 cagccgatta tcgctcatat tgcgttaaag ccgacctcaa gcattactat tcccggcaga
     2941 agcgtgaaca aaaacaacga agccgttgaa gtgatcacta aaggcagaca cgacccctgt
     3001 gtaggtattc gtgctgtgcc gattgcagaa gcgatgatgg cgattgtact actcgaccat
     3061 ctgttaagat ttaaggctca atgccgttaa acacataaaa ttggaaaaat gaaattatta
     3121 aaaacacttt tagtctcaag ccttgctttt acagctaccg cactgaatgc aacgcaatgg
     3181 gagaaaatca aaactccggt tcaaggaaaa gcacaatcta tcggcggtta tagtaacggc
     3241 tgtattattg gggcacagcc ccttgcatta aaaggcgaag gctaccaagt gatccgctcg
     3301 gctcgtaacc gctattacgg acacccacaa ctgctcgatt atctcactca cttaggcaaa
     3361 aaaaccaaag ctgccggtgt gccgaccatt ttaatcggcg atatgggaat gcctgccggt
     3421 gggcgttttg cctccggtca cgcctcccat caaaccgggc tggatgctga tatttggttt
     3481 aagttcggac cgatggacga tgaaaccgcc cgcaatccag cagggcttgc caccattatg
     3541 gtaaaccgta gtaccgagcg ggttgatgat tcactctgga atcaacacca tactaattta
     3601 gtaaaacttg ctgcaaccga tcctcgagtg gatcgcattt ttgtcaatcc tgccattaaa
     3661 gtgaaactct gccaaaccgc aggcaatgat cgtgcttggt tacgcaaaat tcgcccgtgg
     3721 tacggacacg actcccattt ccacgtccgt ttaacctgcc cggctgatgc cgcaagttgt
     3781 gaaaatcaag cccttgtgcc tgccggtgac ggctgtggtg aagagcttta ctcgtggttt
     3841 gagccgaaag aagcctccgg cacaccaaaa gccaaagtgc tacccacagc gcctgttcaa
     3901 tgtcagatga ttttatctga acaaggcttg aattaattgc aaaataacaa ccttttttga
     3961 ccgcttgtca gcccacaagc ggttcatttt cttaaataat ttacgattat gcgtttattt
     4021 gttgccgaaa aacccagcct tgcccgagcg attgccgatg tgttaccaaa accccatacc
     4081 aaaggagatg gctttatcca atgcggcgaa cacgacactg ttacttggtg tatcggtcat
     4141 ttattggaac aggctgaacc cgatgtctat gatgagcgtt tcaaaatgtg gcgaatggaa
     4201 catttgccga ttgtgcctga acaatggaaa ttgattccca aaaaagagac gctcaagcag
     4261 tttaaagtgg tggaaaagct gattaaaaaa gccgatgttt tagtcaatgc cggagacccg
     4321 gatcgagaag ggcagctgtt ggtggacgaa gtttttggct atttgaattt atctgctgaa
     4381 cgcaaaagcc aaattcagcg ttgtttggta agcgatctca acccgaatgc ggtgagccga
     4441 gccattgaaa aattgcaaaa aaacagcgat tttataccgc ttgcaacctc tgctctcgcc
     4501 cgagccagag cggattggct gtatggtatc aatatgaccc gagcctatac cctacagggg
     4561 cgttgggcag gctataaagg cgtgttatca gtcggacgtg tgcaaacgcc ggtattaggg
     4621 ctgattgttc gccgagatct ggagatcgag catttcgtgc caaaggatta ttttgaggtg
     4681 ttggcacaga ttgtcgtgcc ggaaacccaa gagcgattta aggcgcagtg gcaaccgagc
     4741 aaagcctgtg aagattatca agatgaagat gggcgggtgc tgtctcgtcc attggcagaa
     4801 aatgtggtaa aacggattac cgaccagccg gcaaccgtca ccgaatatca aaataaaatt
     4861 gaaaaagaaa ctgcaccgct gccttattct ctttcggtat tacaaatgga agccgccggc
     4921 agatatgggc tatccgccca agcggtgttg gatatttgcc aaaagctgta tgaaacccat
     4981 aaactaatta cctaccctcg ttctgataat cggtatttgc cgaccgaaca tttcaacgac
     5041 agatttaaag tgatggcggc gattgctcat catttacctg aatatcaaca aaaaccggaa
     5101 gtgattgatg ccactattcg caatcgttgc tggaatgata aagaggtgga agcccaccac
     5161 gccattattc ccactgcacg gcaagggacg gtacatttaa ccgaaaatga aaaaagagtt
     5221 tatcaactca ttgcccgcca atatctaatg caattctgcc ctgatgcgga atatcgcaaa
     5281 agtaaaatcg ggcttgaaat tgcaggtggt agttttgtcg ctcaagcacg caaccttgta
     5341 attgccggct ggcgagcgtt actgggtaaa gaagatagcc ttgacgatgc agagccacta
     5401 ctaccgattg tcaaaaaagg gcaaatcctc cattgtgaaa aaggggaaat tgtcagcaaa
     5461 aaaacacaac cgccccgcca ctttactgat cgcagtttgc tttcagcaat gaccgggatc
     5521 gcccgttttg tacaagataa agaattgaaa aaaatcttgc gtgaaaccga tggtttaggc
     5581 acggaggcaa cccgagccgg tattatcgaa ttgctgttta aacgtggttt tttaatccgt
     5641 aaagggaaaa atatccacag taccgaagcc ggcagaatat tgattcaagc acttcccgac
     5701 tctgctaccc agccggatat gaccgctcat tgggaaatgc agctgaatca aatcagcaaa
     5761 aaagagacca gctatcagca atttatgttt gatctaaacc aacagctccc acatttatta
     5821 caaagcccaa accgccaagt gttgcaaaat ttagcgaaaa tcacaccgct tgcaagcggc
     5881 aataaacctc gttattttaa aaagcgaaca caaactgctg aaaattaaat caagcaggta
     5941 aaaattactg tttagcactt gtcaaacggg cgtaaattct atattatgca c
//
LOCUS       DANMBQ010000137         5924 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.138, whole genome shotgun sequence.
ACCESSION   DANMBQ010000137 DANMBQ010000000
VERSION     DANMBQ010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5924)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5924)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5924
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.138"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            603..1607
                     /locus_tag="PXE92_002242"
     CDS             603..1607
                     /locus_tag="PXE92_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL5761442.1"
                     /translation="MPGDANKIISNGTSAGGALSTLLGASADHYDYEPYLKEAGALNA
                     SDKIFAVSAYCPITNLENADMAYEWQFNGVNEYSRIDMSRLNAAEFNDRSKPKPKPKI
                     EGSLNEAEIKVSNELAERFPTYLNSLHLVDEKGNPLTLDPKGNGSFKDYLSEVVKTAA
                     NKAYRGLVQDSEEQKAFQQISWLSFEKGKVSSVDWFGYVFSDKRMKSPPAFDALNGSS
                     GENNLFGTDTENNRHFTLYSAERSANKDLNLADPQIVKRMNPMHYLDNPNAAEHWRIR
                     VGTADRDTSLAISAILAIKLQMAGKNVNYETPWNVPHSGDYDVNELFLWADELVKGKK
                     "
     gene            1662..3512
                     /locus_tag="PXE92_002243"
     CDS             1662..3512
                     /locus_tag="PXE92_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL5761443.1"
                     /translation="MQVKKFSQKYINWVLKLGRLKASLLGFFMVALSAILIQSSLTYL
                     FIGRVVVVDILRSIAFGLISAPFVLYFFTLLVEKLEISRLKLEKAVRDLEELREQDAY
                     LNAKLEKNSRDKSILMATISHELRTPLNGIIGLSQILLDDKTTEKQQEYLKTINMSAT
                     ALAHIFGDIIDLEKIDSSRIELVRKEVEFEQLIHDIANFGHFMAGNKQINFEVKYPPD
                     LPKYIYIDHARLSQILWNLISNAVKFTPASGRILLEIYQLDKEQFSFAVTDSGIGIPE
                     KDQRKIFDMFYQAENSKEKKAQGSGIGLSVSKRIAKLMGGDLVVASQENQGSTFTLTV
                     QAESTETKPIFAIQQHSLKVLLVEDIEMNVVVARAMLEKIGCVVDVAMSGEETFQHFA
                     QNSYDLILLDIQLPDTTGFEIAQQLRLQYENEEIDYLPLLVALTANVIQSRQEYQAQG
                     MDDVLHKPLSLDELMRCLNQHFGDDFLQKNEEKQPLVERGSENLPYSITILNELIGVM
                     GKENVLANMDLFADLMPTYLANLQRYLSDWQTTNSVESRKLTADEAHKIKGALASVGL
                     HQLQQTAQLAQSDNGEQWEQNIAHWVEMICSKWQMDLQLAKEYVRSKGDI"
     gene            complement(3608..4162)
                     /locus_tag="PXE92_002244"
     CDS             complement(3608..4162)
                     /locus_tag="PXE92_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDL5761444.1"
                     /translation="MKSQIYYDYYPSPIGQLLLLATEEGLIYIELGQEQQTTSLDNFL
                     SAQAASGQILEIFCKTKEILDRYFAGEPLDFQQLDFLAPQGTPFQQSVWKILREIPYG
                     QTTTYGEIATQLGKPSAMRAVGGAVGRNPISILVPCHRVLGKNQALTGFGGGLPNKRF
                     LLQLEDITYKDKGIEFVKPKTKKW"
     gene            complement(4229..5710)
                     /locus_tag="PXE92_002245"
     CDS             complement(4229..5710)
                     /locus_tag="PXE92_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein transport protein"
                     /protein_id="HDL5761445.1"
                     /translation="MKMKNFSKTLIASLVAFSSAGASAAAFQLAEISTSGLGRAYAGN
                     AAVADNASVVATNPALMTLFKQTEISAGGIFVDADVNIDGKLNATGADASHKNVIPTA
                     IVPNAYIVSPINERLSIGGGVNVNYGLISEFDPNYSAGFLGGRTSLSAVNVNFSAAYD
                     LGYGFVLGAGLNAVHAKAELGRFLGAGAARFAPAKQFLEDKKVQVQSAIQGLKALEAG
                     IAAGNTALEAQKTQVLAQVNGLLKSQNLNQTITNSAQLERLVNGIQNTNASSTIHKLK
                     GDKWALGWNVGLVYNINERNRLGFTYHSEIDLKFKGKYSNTVPVVIPKMVDTITGGAE
                     IDGTLRLRLPAFWEVSGYHKLTDKLAAQYSYKRTDWSKFQSLEAYDMQGNRLLHKTEN
                     FNDSQRIALGLSYDVNEMLTLRTGVAFDESASVTHPSISIPDTDRAWYSVGATVRFTP
                     NLSADVGYSHLRGSNLTFSEDGLATFKSKARANLYGLNVNYKF"
BASE COUNT         1863 a         1042 c         1247 g         1772 t
ORIGIN      
        1 agttataatg tatgtggaat acatgatagt tagattggaa attgtactaa atcctttttg
       61 tgatgagtgt tttttagata tctaagtctc aaaggtattt aagcaggaga attctatttg
      121 atattatagc cataatagac gtttttaagt ttgttatggc tttatttttt taactatatt
      181 gacagttata aatatcatct tgtccataaa tgatcaatga tcatgcaaaa atgaaccagg
      241 cagacgcgat gagatgatcg acttcatctt ttgataaact ctttgcgatt taaacagaaa
      301 atatatttag aatgtaaaca aacatgagtc gattttatgt tcaaagagct gtaataagac
      361 ggaataatgt cagaccaaga tagatacttt caagtaaaat caagcataaa aatgattttc
      421 agactttaca aatctgaaag aatgtgtaag atcaggattg tccgaaattc ggatggaaaa
      481 tcccagtgga tgtattggct ggatacatca taataactat gtatttgtga atgttatttg
      541 aatgattcta cgtagttgat tcaaaatcag cagtgcggta tctgcatgct aatgatgaaa
      601 aaatgccggg cgatgcaaat aaaattatct ctaacggcac cagtgccgga ggagcattat
      661 ctactttgtt aggagcttca gctgatcatt acgactatga gccttatttg aaagaggcgg
      721 gggcattgaa tgccagtgac aaaatttttg cagtttctgc ctattgccca attaccaacc
      781 ttgaaaatgc ggatatggcg tatgaatggc aatttaatgg tgtcaatgaa tatagccgaa
      841 tcgatatgag tcgattaaat gcagcagagt ttaacgaccg ctcaaaacca aaaccaaagc
      901 cgaaaattga aggctcgtta aatgaggcgg aaattaaagt ttctaatgaa ttagcagaac
      961 gctttccgac ttatttgaac agtttgcatt tggttgatga gaaaggcaat cctttaacac
     1021 ttgatccaaa aggcaacggc tcgtttaaag attatttatc tgaagtggta aaaacggctg
     1081 caaataaagc ctatagaggt ttagttcaag atagcgaaga gcaaaaagcc tttcaacaaa
     1141 ttagttggct ttcatttgag aaaggcaaag tcagcagtgt ggactggttt ggttatgtgt
     1201 tttcagataa acggatgaaa tcaccacctg catttgatgc gttaaatgga agttcgggcg
     1261 agaataattt atttggcaca gacacggaaa ataaccgcca ttttacgctt tatagtgcgg
     1321 aacgttctgc caataaagat ctcaatttag ccgatccgca aatcgtgaaa cggatgaacc
     1381 cgatgcacta tttggataac ccaaatgctg cggaacattg gcggattagg gtgggaacgg
     1441 cagatagaga tacctcgctg gcaatttctg caatcttagc aataaaactg caaatggcag
     1501 gcaaaaatgt taattatgaa accccgtgga atgtacccca ttcaggtgat tatgatgtaa
     1561 atgaattatt cctatgggct gatgagctag tcaaaggcaa aaagtaaaaa atagagtaaa
     1621 ataaagcaga tctgatggtc tgctttttgt tttgaggtcg tatgcaagtt aaaaaattta
     1681 gccaaaaata tattaattgg gtattaaagc tagggcggtt aaaagcttct cttttaggct
     1741 tttttatggt cgctctttcg gcaattttaa ttcaaagtag cttaacctat ctttttattg
     1801 ggcgagtagt cgtggtggat attttacgct ccatcgcttt tggtttaatt tctgcgcctt
     1861 ttgtgcttta tttcttcacg ttattggtgg aaaaacttga aatatctcgc ttgaaattag
     1921 aaaaagcagt aagagatttg gaagaactcc gggaacaaga tgcctatctt aacgctaaat
     1981 tagaaaaaaa cagccgtgat aaaagcattt taatggcgac cattagtcac gaacttcgta
     2041 ctccccttaa tggaattatc ggcttgagcc aaattttgtt agatgataaa accaccgaaa
     2101 aacagcaaga atatctaaaa actatcaata tgagtgccac tgcattggct catatttttg
     2161 gcgatattat tgatttagaa aaaattgata gtagccgaat tgaattggta agaaaagagg
     2221 tggaatttga acaactcatt cacgatattg ctaattttgg gcattttatg gcgggcaata
     2281 agcagattaa ttttgaagtg aagtatccgc ctgatttgcc gaagtatatc tatatcgacc
     2341 acgcacgctt gagccaaatt ttatggaatt tgatcagcaa tgcggtgaaa tttacccctg
     2401 caagcggtcg aattttgctg gaaatttacc aattagataa agaacagttt agctttgcgg
     2461 tgacggattc aggcatcggt attccggaaa aagatcaacg caaaattttt gatatgttct
     2521 accaagcgga aaactctaaa gagaaaaaag cgcaaggtag cgggattggc ttatcggtct
     2581 cgaaacgcat tgcgaagcta atgggcggtg atttggtggt ggcaagccaa gaaaatcaag
     2641 gctcaacttt taccctcact gtgcaggcag aaagcacgga aaccaagccg atatttgcta
     2701 ttcagcaaca ttcccttaag gtgctattgg tagaagacat tgaaatgaat gtggtggttg
     2761 cccgagcaat gttggagaaa atcggttgcg tggttgatgt agcaatgagt ggtgaagaaa
     2821 cgttccaaca ttttgcacag aacagctacg atctgatttt acttgatatt caactgccgg
     2881 ataccaccgg ttttgaaatt gcacagcaat taagattgca atatgaaaac gaggaaattg
     2941 actatttacc gctgttggtt gctttgacgg caaatgtgat ccaaagccgg caggagtacc
     3001 aagcacaagg tatggacgat gtgctacaca aaccgctctc tttagatgaa ttaatgcgtt
     3061 gtctcaacca acattttgga gatgattttt tgcaaaaaaa tgaagaaaaa cagccgcttg
     3121 tagagagagg ttctgagaat ttaccttata gcattacaat tcttaatgaa ttgattgggg
     3181 taatggggaa agagaatgtg cttgccaata tggatttatt tgctgattta atgcccactt
     3241 atttggcaaa tttacagcgt tatttaagtg attggcaaac cacaaattct gtggaaagcc
     3301 gtaaattaac ggcggacgag gctcataaga ttaagggagc attagcatca gtcggattac
     3361 atcagctaca acaaactgct cagcttgctc aatccgataa cggcgagcag tgggagcaaa
     3421 atattgcaca ctgggtggaa atgatttgtt ccaaatggca gatggatttg caattagcta
     3481 aggaatatgt tagaagcaag ggggacattt agtaaatttg aaatgttacg atggtgcaag
     3541 cgtccacgct tgtaccaatt ttaatatctg aagcacaagc gtggacgctt gtgctatcaa
     3601 aacgtattta ccatttcttg gttttcggtt ttacaaattc aatgccttta tctttatagg
     3661 taatatcttc cagctgtaat agaaaacgct tattcggcaa gccaccaccg aatccggtta
     3721 aggcttgatt tttccctaat accctatggc aaggcactaa aatcgaaatc gggtttcgcc
     3781 caactgcacc gccgacggct cgcatcgcac ttggcttgcc tagttgggtg gcaatttcgc
     3841 cataagtagt agtttgcccg taagggattt cacgcaaaat tttccaaact gattgctgga
     3901 atggagtgcc ttgcggggca agaaaatcca actgctgaaa atccaatggc tcgccggcaa
     3961 aatagcggtc taaaatttct ttggttttgc aaaaaatttc taaaatctga ccacttgcag
     4021 cttgagcgga aaggaaatta tcaagcgagg tggtttgttg ctcttgccct agctcaatgt
     4081 aaatcaagcc ttcttctgtg gctaaaagca ataattgccc gatagggctt gggtagtaat
     4141 cgtagtaaat ttgagatttc atgtttttat gccaataaaa aaagaggtgt aattgatttt
     4201 acacctcttt aaaccttaat tcatcaaatt agaatttgta gtttacgttt aaaccgtaaa
     4261 gatttgcacg agctttgctc ttgaatgtgg ctaaaccgtc ttcagagaag gtcaggttgc
     4321 taccacgaag atgtgagtaa cctacatcag cagataggtt tggcgtgaaa cgcacggttg
     4381 cacctacaga ataccaagca cgatcagtgt ccggaattga gattgatgga tgagttacac
     4441 ttgcactttc atcaaatgct acacctgtac gcaatgttag catttcattc acatcataag
     4501 acaagcctaa tgcaatacgt tgagagtcat taaagttctc ggttttgtgc aataggcggt
     4561 taccttgcat atcataagct tctaggcttt ggaatttgct ccagtctgtg cgtttatagc
     4621 tgtattgtgc agcaagttta tcggttagtt tgtggtaacc tgacacttcc cagaatgccg
     4681 gtaggcgtaa tcttagtgta ccatcaatct ctgcaccgcc ggtaatggta tctaccatct
     4741 taggaataac tacaggaacg gtattagaat atttgccttt aaatttaaga tcaatttcag
     4801 agtggtaagt aaaacctaaa cggtttcttt cattgatatt ataaaccaag ccaacattcc
     4861 aacccaatgc ccatttatcg cctttaagtt tatgaattgt tgaacttgca ttggtatttt
     4921 gaatgccatt aaccaaacgt tctaattgag cagaattcgt gatggtttgg tttaaatttt
     4981 gagattttaa taaaccgttt acttgagcta atacttgtgt tttttgagct tcaagagcgg
     5041 tattacctgc tgcgatacct gcctcaagag cttttaaacc ttgaattgca ctttgtactt
     5101 gtactttctt gtcttccaaa aattgtttag ctggagcaaa acgtgccgca ccggcaccta
     5161 agaaacgtcc taattctgct tttgcgtgta ctgcattcaa acctgcccct aatacaaaac
     5221 cataacctaa atcataagcc gcactaaaat taacattcac agcacttaat gatgtacgac
     5281 cacctaagaa accagcagaa tagttagggt caaattcaga tatcaaacca taatttacat
     5341 ttacgccacc accaatagaa aggcgctcat tgataggtga aacgatataa gcatttggaa
     5401 caatagcggt aggaatgaca tttttatgtg aggcatctgc acctgtagca ttgagctttc
     5461 catcaatatt tacatcagca tctacgaaaa taccaccggc agaaatttcg gtttgtttaa
     5521 ataacgtcat taacgcaggg ttggttgcaa caacagaagc gttatcggct acagcggcat
     5581 tacctgcgta agctctacct aaaccggatg ttgaaatttc agctaattgg aatgcggcag
     5641 cagatgcacc ggctgagctg aatgctacta atgaagcgat taaagttttg ctaaagtttt
     5701 tcattttcat aggaaatctc ttaaaaaata tatattttag aatgaataat tcataaaagt
     5761 tataagaaga aagtgcagat tttatgtgtc gaagtactct ctatcaatta aatttcaact
     5821 gttccgatca gttaggagca aataagagtg aaattgtgcg gtctatgaac tgtttatctt
     5881 tggtattttg gtattttcgg ctcttttttc gtataatcag cgtt
//
LOCUS       DANMBQ010000138         5905 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.139, whole genome shotgun sequence.
ACCESSION   DANMBQ010000138 DANMBQ010000000
VERSION     DANMBQ010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5905
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.139"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            67..1080
                     /gene="cas1c"
                     /locus_tag="PXE92_002246"
     CDS             67..1080
                     /gene="cas1c"
                     /locus_tag="PXE92_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003762781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated endonuclease Cas1"
                     /protein_id="HDL5761446.1"
                     /translation="MRKLQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPIHSIGHI
                     FCFGNVLVSPFLMGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYKKSETNP
                     VPVARNIIAAKIQASKRVLQRQIRNHGENADLQSTITALNYSLQQLKTADNLDLIRGI
                     EGDAAARYFGVFSHLIKENSGFHFDGRNRRPPRDGVNALLSFLYSIVGKDISGALQGV
                     GLDPQIGFLHADRSGRDSLAQDILEEFRAWWVDRMVLSLINRGQVKPDDFVTEASGAV
                     TLKPEARKLLFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQAMLLARHLRGDLAEYPPF
                     LMR"
     gene            1147..1440
                     /gene="cas2"
                     /locus_tag="PXE92_002247"
     CDS             1147..1440
                     /gene="cas2"
                     /locus_tag="PXE92_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDL5761447.1"
                     /translation="MLMLITYDISFDDPEGQARLRRIAKHCLDYGVRAQYSVFECDVT
                     PAQWVTLKNKLLATYNPDCDSLRFYHLGSKWRNKVEHHGAKPSVDIFKDTLIL"
     repeat_region   1632..2466
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=1632..1651
                     /rpt_unit_seq="cagccacctacgcgtggctg"
     gene            2716..4191
                     /gene="rng"
                     /locus_tag="PXE92_002248"
     CDS             2716..4191
                     /gene="rng"
                     /locus_tag="PXE92_002248"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HDL5761448.1"
                     /translation="MSSTELLVNVTPSETRVALVENGILKELHIEREAKRGIVGNIYK
                     GRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFLVKDISELVREGQ
                     DIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLKSLVE
                     PYCDELGGFIVRTAAEEATEESLKQDVEFLKRLWRKVLERKGKYSAKSMLYGELALAQ
                     RVLRDFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKA
                     IQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAH
                     QLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRK
                     RTRESLERILCCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVA
                     EYLINEESHALLAELQAFIGKKIEIKLEPYYHQEQFDVVVM"
     gene            4345..5847
                     /gene="lysS"
                     /locus_tag="PXE92_002249"
     CDS             4345..5847
                     /gene="lysS"
                     /locus_tag="PXE92_002249"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDL5761449.1"
                     /translation="MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKD
                     LHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLSD
                     SVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLE
                     TRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKP
                     FITHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEY
                     YQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPFERITMHDAIVKYGN
                     GIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAE
                     ISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEA
                     MFKDEDFIVALEHGLPPTAGEGLGIDRLVMIFANAPSIRDVILFPAMRQK"
BASE COUNT         1747 a         1068 c         1377 g         1713 t
ORIGIN      
        1 tcaaaaatca gaaaaatata tttaaataat tatgatgtga gattaaagtt aaagggattt
       61 tcaaccatgc gcaaactaca aaacaccctc tacattacca cccaaggtag ctatttgcac
      121 aaagagcgag aaaccttggt ggtggagcaa gatcggaaga aagtggcaca gttgccgatt
      181 cattccattg ggcatatttt ttgttttggc aatgtgttag tgtcgccgtt tttaatggga
      241 ttttgtggcg aaaataacgt aaatttagcg ttttttaccg aaaatgggcg ttatcttggg
      301 cggttgcagg ggcggcaaag tggtaatgta ttgttacgcc gagcccagta taaaaagtcg
      361 gagaccaacc ctgttcctgt ggctcgcaac atcattgcag ccaaaattca agcatctaag
      421 cgggtgttac aacggcaaat tcgtaatcac ggcgaaaatg ctgaccttca atcgacaatt
      481 accgcattaa attacagcct gcaacagttg aaaacagcag acaatttgga tttgattcgt
      541 ggcattgagg gcgatgctgc ggctcgttat tttggggtgt tttctcatct tatcaaagaa
      601 aatagcggtt tccactttga cggacgtaat cgccgcccac ctcgtgacgg tgtgaatgcg
      661 ttgctttcat ttctttatag cattgtaggg aaagatatta gcggggcatt gcaaggcgtg
      721 gggcttgatc cccagattgg ctttttgcat gcagatcgtt cggggcgaga tagcttagct
      781 caagatattt tggaggaatt tcgagcgtgg tgggtggaca gaatggtgct gtcgctgatc
      841 aatcgagggc aggttaagcc tgatgatttt gtgacggaag ccagtggtgc ggtaacgctc
      901 aagcctgaag ccagaaaatt actatttcaa accttgcaag cgaaaaaaca agaaaaaatc
      961 atccacccat ttttagagga agaagtggaa atcggcttgt taccttatat ccaagcgatg
     1021 ttattggctc gtcatttgcg tggcgatttg gcagaatatc cgccgttttt aatgcgttaa
     1081 aatctgcaaa attttgttga aatttgaccg cttgtttatg ttttattcat tgaggaatta
     1141 gcaactatgc tgatgttgat tacctacgac atttcatttg atgaccccga agggcaggct
     1201 cgcctacgcc gtattgctaa gcattgtttg gattatggtg tgcgggcgca atattctgtg
     1261 tttgagtgtg atgttactcc tgctcagtgg gtaacattga aaaataaatt attggcaact
     1321 tacaacccag actgtgatag tttgcgcttt taccatttag gcagtaaatg gaggaataaa
     1381 gttgagcacc atggcgcaaa accttcagtg gatattttta aagatacgct gattttataa
     1441 atcgctagcc tgtagttctc ataaaaatgt agcaaggtta gcgaatctat attgttcttt
     1501 aataatcaag gaattagaaa aaataaggca caatatattg gcgatatgct atactttatc
     1561 cactctctac aaaacgttag cgaataaagg gctaaaaagc ctgatatttc aatacgttat
     1621 cttataggga ccagccacct acgcgtggct gcgaattgaa accaccgctg ctacttcggt
     1681 tatcggagta gtttgcaccc agccacctac gcgtggctgc gaattgaaac gtggcacagt
     1741 aacacgagca gatgctgata aacgcccagc cacctacgcg tggctgcgaa ttgaaaccag
     1801 cagccgttgt taccgtggtg caatgcttgc gccagccacc tacgcgtggc tgcgaattga
     1861 aactacactt attgccatag ggtagtagta atcttttacc cagccaccta cgcgtggctg
     1921 cgaattgaaa ctgcgatttt tggatttttc gggcgataaa tgataccagc cacctacgcg
     1981 tggctgtgaa ttgaaactcg tggctggtta tacaaagaaa agcattgttg ggcagccacc
     2041 tacgcgtggc tgtgaattga aacttaaatc taaagctaaa gctattttat taattaaagc
     2101 agccacctac gcgtggctgt gaattgaaac tttaccgttt accgattgga ttttaatgct
     2161 agaggcagcc acctacgcgt ggctgtgaat tgaaacccta aattgccgta aaaatctgcc
     2221 attagctacg cgcagccacc tacgcgtggc tgtgaattga aacctcataa cgaatccaat
     2281 cctgttcggt taatccccgc agccacctac gcgtggctgt gaattgaaac aggggcgtgt
     2341 accgcaatca attttaatta taaccaagca gccacctacg cgtggctgtg aattgaaacc
     2401 tcgtcttgaa ttggaaaatc aagggcgaca ataggcagcc accttcgcgt ggctgtgtat
     2461 tgaaacggtg tacccacaaa tcctatgttt tcgccattgg ctgctacctt cgcatcaata
     2521 tatattgaaa tatcaatggc aaatttgtat gttgttaatt agactgattg catctgctat
     2581 gtatcatagt aatgacgaaa atattctatt ttgcaaaaaa taatcagaaa ttacccgctt
     2641 gttcgaactg agtttttgtt ttctaagatg tgaaatgata cactttagat agttttaaaa
     2701 tatagagaca gtaagatgag tagtacggaa ttattagtga atgttacccc aagcgaaaca
     2761 agggtagcgt tggtagaaaa cggaatattg aaagaattac atattgagcg ggaagctaaa
     2821 cgcgggattg ttggtaatat ttataaggga agggtgacaa gggtattacc aggtatgcaa
     2881 tctgcttttg tggatatcgg cttggagaag gctgcttttt tgcacgcttc tgacatcgtt
     2941 tcgcatacgg aatgtgttga tgaaaatgaa aagaagcaat ttctggttaa agatatttct
     3001 gaattggtgc gtgaagggca agatatagtt gtacaagtag tgaaagatcc aattggtact
     3061 aaaggagcta ggctcactac tgatattacg ttaccatctc gttatttagt gtttatgcca
     3121 gaaaatagcc atgtgggagt atctcagcgg attgaaagtg aagaagagcg tgctcgttta
     3181 aaaagcttgg ttgagcctta ttgtgatgaa cttgggggct ttattgtacg taccgctgca
     3241 gaagaggcaa ctgaagaaag tttaaagcaa gatgttgaat ttttaaaacg gttgtggcgt
     3301 aaagtattag aacgaaaagg gaaatattcc gcaaaatcaa tgctttatgg agagcttgcg
     3361 cttgctcaaa gggtactgcg tgattttatt ggtacacata tcaattcggt tagaatcgat
     3421 tcaaagctaa cttatgagca agtgcgagaa tttttagctg agtttatgcc agaattaacg
     3481 gattgtgtca ccctctatac cggtcagcaa actttatttg atgcctatgg tgtagaaaag
     3541 gcaatccaaa aggcattgga taaacgggtt gatttaaaat cggggggcta tttaattatt
     3601 gagcaaactg aggcgatgac gactattgat attaatactg gtgcttttgt cggacatcgt
     3661 aaccttgcac atacgatttt caacacaaat attgaagcaa tacaggcaat tgcacaccag
     3721 ctacagttgc gtaatttagg tggtattatc attattgatt ttattgatat gcaagaggaa
     3781 gaacatcgtg agcgcgtttt acaatcgtta caagaggcat taaaaggcga tcgtgttaaa
     3841 accaatgtga atggctttac tcagcttggc ttggtggaga tgaccagaaa acgtacaagg
     3901 gagagtctag agcgaattct ttgttgcgat tgccaagctt gccaagggcg tggcacagtg
     3961 aaaactgtag agacggtttg ctatgaaatt atgcgtgaaa ttgtgcgtgt acatcatttg
     4021 tttaagacag aaaatattca cgtttatgca gctaaagatg ttgctgaata tttaattaac
     4081 gaggaaagcc acgcattatt ggctgagctt caggcgttta tcggtaaaaa aattgagatt
     4141 aaacttgagc catattatca tcaagagcag tttgatgtgg tcgtgatgta atctattact
     4201 tggttgaggc taaatagtta gcctcaatat cgttagttac aaaaaattta gaaaatctga
     4261 ccgcttgttt cctatccaaa ttcctcaaaa taacgtataa tcgtccagtt ttatttatcc
     4321 ttttttgaaa tctaaggtaa ttcaatgtct gaagtagaaa atcaagaatt agatctaaac
     4381 ggtgaaatgt tagcccgccg tgaaaaatta aacaaaatcc gtgagcaggg taacgcattt
     4441 ccaaatacat tccgtcgtga tgcgttagcc aaagatctgc acgctcaata tgatgcagtg
     4501 gaaggtgaaa ccttaaaaga acagaatatt caagtgaaag ttgccggtcg tattatgtta
     4561 aaacgagtaa tgggtaaggc atctttcttt accattcaag atgtgagcgg tgcgattcag
     4621 ctttatgtag ctcgtgataa cttaagtgac agcgtttacg aagaaaaagt cagcctttgg
     4681 gatttaggcg acattgtggg cgtcgaaggt gcgttattta aaaccaaaac cggtgaatta
     4741 acggttcgtt gctctgaagt tcaactttta accaagtctt tacgcccgtt gccggataaa
     4801 catcacggtt taacggattt agaaactcgt tatcgtcagc gttatttaga cttgatttct
     4861 aatgaagaat ctcgccgtac ttttatgatc cgctcgcaag tagtttcagg cattcgcaaa
     4921 ttcttcttag aaagagactt tattgaagtt gaaacgccaa tgttgcaagt gatcccgggc
     4981 ggtgcggcag cgaaaccgtt tatcactcat cataatgcgt tagatgtgga tatgtatctg
     5041 cgtattgctc cagagcttta cttaaaacgt ttagttgtgg gtggttttga gcgagtattt
     5101 gagcttaacc gtaacttccg taacgaaggg gtttcagtac gccacaatcc tgaatttaca
     5161 atgattgagt actaccaagc ctatgcggat tatcacgatt taatggataa taccgaagaa
     5221 ctgttacgcc aattagcctt agatattctt ggcacaactg acgtacctta tggtgattat
     5281 gtattcgatt tcggtaaacc gtttgagcgt attacgatgc acgatgcgat tgtgaaatat
     5341 ggtaacggca ttcaacgtga agatttagac agcttcgaga aaagtgtgga aattgcgaaa
     5401 ggcttaggca ttgaaattca aaaatcttgg ggtttaggct cggtagtcaa tgcgattttt
     5461 gaagaagtgg cagaacatca attaattcag ccaactttct tgatggctca cccggcagaa
     5521 atttcaccat tagctcgccg taatgatgaa aacccagagg taactgatcg ttttgagtta
     5581 tttatcggtg gtcgtgaaat tggtaatggt ttctcagaat taaacgatgc agaagaccaa
     5641 gcagagcgtt ttgatgctca agttgcggcg aaagatgccg gtgatgatga agcaatgttt
     5701 aaagatgaag actttatcgt ggcattggaa cacggtctgc cgccaacagc gggtgaaggt
     5761 ttaggaattg accgcttagt aatgattttc gctaacgccc catcaatccg tgatgtaatt
     5821 ttattcccag cgatgcgtca gaagtaatca gaaatagaac aaaagcacac ttcggtgtgc
     5881 ttttttgtat tacaagcggt caaat
//
LOCUS       DANMBQ010000139         5766 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.140, whole genome shotgun sequence.
ACCESSION   DANMBQ010000139 DANMBQ010000000
VERSION     DANMBQ010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5766
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.140"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..202)
                     /locus_tag="PXE92_002250"
     CDS             complement(<1..202)
                     /locus_tag="PXE92_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761450.1"
                     /translation="MSLLKKAQTFISIFNEVRAKNEAQRQSSNNLNVALKNAAEMRAE
                     MNGFSLKPQKRSTYFADHYGCGI"
     gene            complement(323..640)
                     /locus_tag="PXE92_002251"
     CDS             complement(323..640)
                     /locus_tag="PXE92_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5761451.1"
                     /translation="MLSRKEVLMTRRASMNLQQIIRNVVEYTYSYESGDKLSAEIHNT
                     LDNLSYFPRIGVIGSVENTRECFCRGYRIIYRETENQVQILAIIHCRQQYPTDYYRSA
                     FKA"
     gene            complement(633..791)
                     /locus_tag="PXE92_002252"
     CDS             complement(633..791)
                     /locus_tag="PXE92_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761452.1"
                     /translation="MTEEYQNFLIEQVKQGLDDIENGRVISLEESRQLCQKTIYETLQ
                     ELQGAVYA"
     gene            complement(845..1000)
                     /locus_tag="PXE92_002253"
     CDS             complement(845..1000)
                     /locus_tag="PXE92_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761453.1"
                     /translation="MLFKEKGYDEFLTQKIAKGRAELESGKGIPLEQATLLVQSTIEE
                     TAQELDD"
     gene            complement(1138..1395)
                     /locus_tag="PXE92_002254"
     CDS             complement(1138..1395)
                     /locus_tag="PXE92_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761454.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFYNYQQFMPEVEAKESLR
                     EQEPELDDGYNEEEYSEEEYSDENDASDENDNYDETYDDNF"
     gene            1409..1585
                     /locus_tag="PXE92_002255"
     CDS             1409..1585
                     /locus_tag="PXE92_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761455.1"
                     /translation="MAYVRIYQGEAYGWCAEKGEANTECPEALLVSLTGDIFEAVGGD
                     KLKGAKKWQPYKKE"
     gene            1589..1735
                     /locus_tag="PXE92_002256"
     CDS             1589..1735
                     /locus_tag="PXE92_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761456.1"
                     /translation="MDTTQKRVALFIIGLSVVMWLRKHNCCTVIFVLLLAALAFSYTM
                     EHLY"
     gene            1751..1957
                     /locus_tag="PXE92_002257"
     CDS             1751..1957
                     /locus_tag="PXE92_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761457.1"
                     /translation="MVKNVVHEEILHNRAELQQAVEKEEFCAKCDNSVVFHLRDNYHE
                     FTLGLDTILQCLHFAEEKGAIRIP"
     gene            1954..2730
                     /locus_tag="PXE92_002258"
     CDS             1954..2730
                     /locus_tag="PXE92_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761458.1"
                     /translation="MNIEYSLNHCQGDGVAFYGRLGTDDLIQLFNHLNPQKRKQKMFA
                     NLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMELYAKTADQLVFFNDSDARRNWYF
                     PTSKVYKYKGLWDEFIQDLEQYIKGTSREMESVGYQIIEASPYQTETVFKFNTENYLV
                     ELKRKPSEFYSELVDWAFGDMCDFEATIEQICQGQLCYADFEATVTDKKSEIQLGLAR
                     LSGISYSPNDRSFSGYRQELIGEAIASARHNAARFAYLHA"
     gene            2845..3257
                     /locus_tag="PXE92_002259"
                     /pseudo
     CDS             2845..3257
                     /locus_tag="PXE92_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
     gene            3271..3426
                     /locus_tag="PXE92_002260"
     CDS             3271..3426
                     /locus_tag="PXE92_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761459.1"
                     /translation="METRIVKVIYDDGDYFFTRINADEQAIRNYYAIGSSIGFDDIRK
                     IIAVEIL"
     gene            3506..4480
                     /locus_tag="PXE92_002261"
     CDS             3506..4480
                     /locus_tag="PXE92_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL5761460.1"
                     /translation="MNTQPKFDLYQHITDRIVVALEQGTAPWLKPWSHPECNMALPRN
                     AVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRPDE
                     REKLDEEGNIVYDEEGNPEMERHFFINKHNLFNLDQCENLPVELYDPVSEPKQPKSEP
                     NQYDIFAEIRQIIKGMDLQVEMKPSNRAFYQPGEDKVVMPEMKQFANAQAFHSVLLHE
                     MTHATGANNRLNREGITSGKAKFGNKVYAFEELIAEMGGAFLCAYLGFDTVPQNAAYI
                     ESWIRVLKEDKRAIVRASGKAREACQYMLDALNVAQLADKYDVFEEAA"
     gene            4567..4764
                     /locus_tag="PXE92_002262"
     CDS             4567..4764
                     /locus_tag="PXE92_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761461.1"
                     /translation="MTKSTEIPRGHDNWVITGRDNDGKWHKERFLYYSRREAIQQFRR
                     KHNCVGKHSVIESITPQFGWY"
     gene            4841..5083
                     /locus_tag="PXE92_002263"
     CDS             4841..5083
                     /locus_tag="PXE92_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761462.1"
                     /translation="MFNLNLFKRPIELSTLESWSKFCDDVGKVAFIAIPPMIYSNYDL
                     CIKIGNISALLAITYGFLLSGRTIRQFIEKEKSRWD"
     gene            complement(5243..5500)
                     /locus_tag="PXE92_002264"
     CDS             complement(5243..5500)
                     /locus_tag="PXE92_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761463.1"
                     /translation="MNNKQILSIAQKFRQNHKDSHPFMLERGYVRIYQGKAYGWCAEQ
                     EDANTECPTALIVSLSNEIFEATGGDDISGAEKWEKYNSNF"
BASE COUNT         1718 a         1016 c         1164 g         1868 t
ORIGIN      
        1 gaataccaca accataatgg tcagcaaagt aagtagaacg cttttgaggc ttaagggaga
       61 acccattcat ctcagctctc atttcagcag catttttcaa ggcaacattt aaattgtttg
      121 aagactggcg ttgagcttca tttttagctc gcacttcatt aaaaatagag ataaacgttt
      181 gtgctttttt aagtagagac attgtggttc tcctgttttt tgcacctaat attattgaac
      241 tatggtaggc ttggcgagca ttgccttgag ttttaattcg gctacggtca tttttctttt
      301 tatttccatt ttatagctcc tgttatgctt tgaatgcaga gcgataatag tcggttgggt
      361 attgttgacg acaatggata atggctaaaa tttgcacttg attttctgtt tctcgatata
      421 taattctata acctcggcaa aagcattctc tagtattttc tactgaacct ataacaccaa
      481 ttcgtggaaa ataagaaaga ttatccaaag tgttatgaat ttccgcagat aatttatcac
      541 cactttcata gctataagta tattccacaa cattacgaat gatttgttgt aaattcatac
      601 ttgctctgcg agtcattaac acctcttttc gactaagcat acacggctcc ctgtagctct
      661 tgcaaggttt catatatggt tttttgacac agttgacggc tttcttctaa tgaaataaca
      721 cgtccgtttt ctatatcatc aagtccttgt tttacttgct ctattaagaa gttttggtat
      781 tcttctgtca tggataactc ctatcattag ttgtatatag atatattagc aatgttacaa
      841 attgttaatc gtccagttct tgagcagttt cttcaatagt tgattgaact aacaatgtgg
      901 cttgctcaag aggaatacct tttccggatt ctaattcagc tctgcctttt gcaatttttt
      961 gagtaaggaa ctcatcgtag cctttttctt taaatagcat tttatgttcc tttcacttat
     1021 tacaaggctt tcaggcatag ggattatgtt ctcctaaatg cgaaatattg gaataattta
     1081 cgcttaaagc aatagagtgt caagagcagg gtttttggaa gtgtggtttg ggaatattta
     1141 aaaattatca tcataagttt catcgtagtt atcgttttca tcgctggcat cattttcatc
     1201 ggaatattct tcttcgctat attcctcttc gttatatcca tcatcaagtt caggttcttg
     1261 ttcccttagt gattctttag cttcaacttc aggcataaat tgctggtaat tgtagaaaaa
     1321 agtgccatcg ctgccttttt cccaaagtcc ggcgtagttg tattttacat attcaggatc
     1381 agcgtggcat atcatcccta attgaggggt ggcatatgtt cgtatttacc aaggtgaggc
     1441 ttatggttgg tgtgctgaaa aaggagaggc aaatacagaa tgccctgagg ccttattggt
     1501 gagtttaacc ggcgatattt ttgaagcagt cggcggagat aagctgaaag gtgccaaaaa
     1561 atggcagcct tacaagaaag aatgacagat ggatacgaca caaaaacgtg tggctttatt
     1621 catcattgga ttatctgttg tgatgtggct aagaaagcat aactgctgta cagtgatatt
     1681 tgtattgttg ttggcagcgt tagcatttag ctacacgatg gaacatttat attagctggg
     1741 gaactgaatt atggtaaaga atgtggttca tgaagagata ttacataacc gtgcagaatt
     1801 acagcaagcg gttgaaaaag aagaattttg tgcaaaatgt gataactcag tagtattcca
     1861 tttacgtgat aattatcacg aatttacgct tgggttagat actatattgc agtgtctgca
     1921 ttttgctgaa gagaagggag ctatccggat accttgaata ttgagtattc actcaatcat
     1981 tgccaaggag atggagtcgc attttatggt cgacttggta cagatgatct aatccagctt
     2041 ttcaatcatc tcaatccaca gaaacgtaaa cagaaaatgt ttgctaattt gctaacgcac
     2101 attgagtctt gggaaaccca cgatgatatt ggttttgaaa ttatacgaaa tcgctttggg
     2161 tatcgttact cgcattggaa tacgatggag ctttatgcta aaactgcaga tcagttagtg
     2221 tttttcaatg atagtgatgc tcgaagaaac tggtattttc cgacttcaaa agtgtataaa
     2281 tacaaaggct tgtgggatga gtttattcag gatttagaac agtatattaa gggtacttcc
     2341 cgtgaaatgg aatcggtcgg ttatcaaatt attgaagcct cgccgtatca aacggaaacc
     2401 gttttcaaat ttaatacgga aaactatcta gtagaactga aacgtaaacc ttctgagttt
     2461 tattcagagc ttgttgattg ggcatttggt gatatgtgtg attttgaagc aactatagag
     2521 cagatttgtc aagggcaact ctgttatgct gattttgaag caactgttac cgataagaaa
     2581 agtgaaattc agttaggtct tgctcgcttg agtggaataa gttactcgcc gaatgaccgt
     2641 tcgtttagtg gttatcgaca agagcttatt ggtgaggcga ttgcctctgc tcgccataat
     2701 gcagcacgtt ttgcctactt gcacgcctaa tttgcagatt tgtacttcaa tttgaccgct
     2761 tgtagtggtt aattttcacc ccgtggggaa atattttccc tattgggcaa gatgtttctc
     2821 cactttttaa tttggagaaa tgtgatgaaa aatgaacaca atttagagca acttaaatat
     2881 atttgggata accgcaacct tgaaaataaa gcctatcaat acctgtttca catttgcatt
     2941 gagccgatga aaaaaggaga ttggaatcgt tatacgattt ggcttaattt tcacggcaac
     3001 ttaatcaacg tgtcagacgt tgtatatcga gttgtggaat ctcaaaagct caaggatgac
     3061 atcaaaatgt ggtatgacaa taataccatt gtcgtccgat aaaagttgaa acaacaggct
     3121 tcatctcata tttactgcac cagttctatc aggggatagc ctatatttta ctggaacagg
     3181 gaatgattac tgaaactgaa gcagccgaga aaagttataa cttcagagct gcaaattgtt
     3241 ttcaacgttt gctttaatgg aggtgagata atggaaactc gcattgttaa agttatttac
     3301 gatgatggtg attatttctt tacccgaatc aatgctgatg aacaggctat ccgtaattac
     3361 tacgccatag gcagttcaat aggttttgat gatataagaa aaattatcgc tgttgaaatt
     3421 ttataaacca cccatagggg aaactatttc cccatagggt gatagcgttt ccccattttt
     3481 ctacccgaac tttggagaaa cacttatgaa cactcaacct aaatttgatt tataccaaca
     3541 catcactgac cgaattgttg tagcactgga acaaggtaca gccccgtggt taaaaccgtg
     3601 gagccatccg gaatgcaata tggcattacc tcgcaatgcg gtatctaacc gcttgtattc
     3661 cggtatcaat acactcttac tctggattgc tactgctgaa catggttaca aacagtgcaa
     3721 gtggattaca gcaaaaaaag ccaatgaact cggcggatat atccgtaaag gggaaaaagc
     3781 tactgtggtg atgaactacc gtcctgatga gagagagaaa ctcgatgagg aagggaatat
     3841 tgtgtatgac gaggaaggaa atccggaaat ggaacgacac tttttcatta ataagcacaa
     3901 tctgttcaat ctggaccagt gtgaaaattt accggtggaa ctgtacgatc ctgtatcaga
     3961 accgaaacaa cctaaatctg agccaaacca atacgatatt tttgctgaga ttcggcagat
     4021 tatcaaagga atggatttgc aggtggaaat gaagcctagc aatcgggcat tttatcaacc
     4081 aggtgaagat aaggtcgtaa tgccggagat gaagcagttt gcaaatgctc aagcgtttca
     4141 tagtgtattg ttacacgaaa tgactcacgc aacgggggca aataatcggc ttaatcggga
     4201 aggtattact tccggaaagg ctaaatttgg aaacaaagtc tatgcttttg aggagttgat
     4261 tgctgaaatg ggcggtgcat ttttatgtgc ctaccttggt tttgatactg tgcctcaaaa
     4321 tgcggcgtat attgaaagtt ggattcgagt attgaaagaa gataaacggg cgattgtccg
     4381 tgcttccgga aaagctcgtg aagcctgcca atacatgtta gacgcattaa acgtcgcaca
     4441 gttggctgac aaatacgatg tatttgaaga agctgcttaa caaatttgcc gaaaggcata
     4501 tctcaagggg agacctatcc ctttgggcat agtgtttccc tattttttat taaatggaga
     4561 aaagctatga caaaatcaac tgaaatacct cgtggacatg ataactgggt tattacaggc
     4621 agagacaatg atgggaaatg gcataaagaa cgttttcttt attattctcg ccgtgaagcc
     4681 atccaacagt ttcgtcgaaa acacaactgc gtaggtaaac atagtgttat tgaatcaata
     4741 acacctcaat ttggctggta ttaaccggct ttcccgtggg gagatactct cccttcggag
     4801 cattgtgtct ccctttttat tcacttaact agaggacaca atgttcaatc taaacttatt
     4861 taaacgccct attgagcttt caacgcttga atcttggtct aaattctgtg atgatgtcgg
     4921 taaagttgca tttattgcga tacctccgat gatttatagt aattatgatc tatgtatcaa
     4981 aataggaaac ataagtgctt tattggcaat tacctatgga ttcttattat caggcaggac
     5041 tatccgtcaa tttattgaga aggagaaatc aagatgggat taacaatcgg cttatggatc
     5101 attgctttta taggctttgc actggttttt tgggcaaata gcttactcaa agagcaagat
     5161 gaacgcctta aacagctaaa aaaatagctc aactttacac tcaatacggc acatttggtg
     5221 ccgtatttca ttcttatcct aattaaaaat tagaattata tttttcccat ttttcagccc
     5281 cacttatatc atcacctcca gttgcctcaa aaatttcatt agataagctg acaattaagg
     5341 cggtagggca ttccgtgttt gcatcttctt gctctgcaca ccagccatag gcttttccct
     5401 gataaatacg aacataacca cgctctagca taaaagggtg agaatccttg tgattttgac
     5461 gaaatttttg agcaatagac aaaatttgtt tattgttcat aattattttt cttattgctt
     5521 atatgctgaa aattgatgat tgaatttatt atatctaatt ataatattca atcctgttgc
     5581 tatactgtct aaatcgacta tgtgttcatc cttttggttc ataaatgtac atttctctat
     5641 aataactaaa atgtttttgg tctctgaatt gtttattatt tcttttgctg gcattagctc
     5701 cataaagtga gataacttca ttcttattgt tctgaagtac caatacttag tattgcaata
     5761 tgctat
//
LOCUS       DANMBQ010000140         5696 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.141, whole genome shotgun sequence.
ACCESSION   DANMBQ010000140 DANMBQ010000000
VERSION     DANMBQ010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5696
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.141"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(167..397)
                     /locus_tag="PXE92_002265"
     CDS             complement(167..397)
                     /locus_tag="PXE92_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005720191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761464.1"
                     /translation="MALHRCPECRKRISDSLEHCIHCGFSFKEADLAIYRQKLEQRRL
                     HNQEINRKSVKLQLIWLVIFIAVIALASWITN"
     gene            complement(405..1148)
                     /locus_tag="PXE92_002266"
     CDS             complement(405..1148)
                     /locus_tag="PXE92_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761465.1"
                     /translation="MLNKHINKIINSSFSLAFFTLTSFATAYCYGWGQAIFHGYPWWH
                     VEIGNASMARSLAYVFGTSVILFLCYALGYSLLNKVFQLHYFRNLGWLRVIVLVSVFT
                     VPVILTFYLFTGIVPIYISFIYIFVSGVSVFFFRKRWNNTKFDLDFRKMLLGGSFALF
                     NIFIFLYFSLLSLHIGYLRAGLRTTYDYIEIENQKYYILSTNSDNGYIMGTKIRGNQS
                     FLFFNRDTHQYYHVHIEQCTDSRLCKVIV"
     gene            complement(1319..1657)
                     /locus_tag="PXE92_002267"
     CDS             complement(1319..1657)
                     /locus_tag="PXE92_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5761466.1"
                     /translation="MKLITTIIQPSKLDQVQDALSEIGIQGMTITEVKGFGRQYGHTE
                     QELSQMSRIDFRPKIKVEILVSNYQTDEVIDAILNASYSGQVGDGKIYVANIEQVIRT
                     RTGETDDEAV"
     gene            1916..3814
                     /gene="dnaK"
                     /locus_tag="PXE92_002268"
     CDS             1916..3814
                     /gene="dnaK"
                     /locus_tag="PXE92_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005670448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDL5761467.1"
                     /translation="MGKIIGIDLGTTNSCVAVMDGDKPRVIENAEGARTTPSIIAYTD
                     KETLVGQPAKRQAITNPKNTLFAIKRLIGRRFTDAEVQRDIEIMPFEISKADNGDAWV
                     TVKGDKLAPPQISAEILKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIA
                     GLDVKRIINEPTAAALAYGLDSKKENQTIAVYDLGGGTFDISIIEIDNFDGEQTFEVR
                     ATNGDTHLGGEDFDNRVINYLVEEFQKEQGVDLRNDPMAMQRVKEAAEKAKIELSSAQ
                     ETEVNLPYITADATGPKHLNIKVTRAKLESLVEDLVNRSLEPLKTALADAGLSVGDIN
                     DVILVGGQTRMPLVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLSGSVTDVLLLD
                     VTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRAADN
                     KSLGQFNLEGINPAPRGMPQIEVTFDIDANGIINVSAKDKNTGKEQQIKIQASSGLSD
                     AEVEQMVRDAEANAEADKKFEELVQARNQADGIAHATRKQITEAGDALNADDKAKIEA
                     AISELETAAKGEDKAEIEAKIEALIKASEPLMQAAQAKAQGGEQPQQSQKDDGVVDAE
                     FEEVKDNK"
     gene            3956..4258
                     /locus_tag="PXE92_002269"
     CDS             3956..4258
                     /locus_tag="PXE92_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761468.1"
                     /translation="MLKLYPTTENVQPPFYKIYDHKSGETVIATETENSNTAILMDDF
                     VWFEQIPTTEALLADTWSVIENRSKQGLLKRAYTKDFEKHLADGKVEIYIAVNPHC"
     gene            4481..5620
                     /gene="dnaJ"
                     /locus_tag="PXE92_002270"
     CDS             4481..5620
                     /gene="dnaJ"
                     /locus_tag="PXE92_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDL5761469.1"
                     /translation="MAKKDYYEVLGLSKGASEKDIKRAYKRLAAKHHPDKNQGSKESE
                     EKFKEITEAYDVLTDSEKKAMYDQYGHAAFEQGGAGAGGFGGFGGGGFGGFEDIFSEM
                     FGGGFGGGGRRQRVVRGDDLRYDIEITLEEAVKGCKKDIRIQTLAECDTCHGTGAEAG
                     SKVETCSHCHGSGRVRRQQGFFVTEAVCPSCHGTGKRIEKPCRSCHGDGRVQKAKNLS
                     VTIPAGVDTGNQLRLSREGAAGENGAPAGDLYVVIHVKEHDIFERDGSNLYCEVPISF
                     TLAALGGEIEVPTLDGKLKLKIPAETQTGKLFRVRGKGVTSPRGGYAGDLICKVVVET
                     PVNLTEEQKALLRQFEESLEGQGKHRPKHEGFFDGVKKFFDNLGK"
BASE COUNT         1848 a         1112 c         1218 g         1518 t
ORIGIN      
        1 aaaaccatat taacaataag gttatcactg gtttttatcc cttatttttt atgaaaaatc
       61 ttataatatt gaatatttac tccagtttta atcgagaatt atgttctttt ttattttgtt
      121 attctcttta ggtataaaaa aacccggtaa ataccgggct tttatttcaa ttggttatcc
      181 aacttgcgag agcaattacc gcaataaaaa taactaacca aataagttgt aattttacgc
      241 ttttgcggtt gatctcctgg ttgtgtaatc ggcgctgttc taacttttgc cgatatatcg
      301 ctaaatcggc ttctttaaac gagaagccac aatgtatgca atgttctaaa ctgtcgctaa
      361 tacgctttcg acactccgga caacggtgta atgccataat tacctcaaac tattactttg
      421 cataatcggc tatccgtaca ttgttcaata tgaacatggt agtattgatg agtatcacga
      481 ttgaaaaaca agaaagattg attacctctt atttttgttc ccataatgta gccgttatca
      541 ctgttggtgg ataatatgta gtatttttga ttctctattt cgatgtaatc ataggtagtt
      601 cttagtccgg cacgcaaata accaatatgc aatgagagca aactgaaata gagaaaaata
      661 aagatgttaa acagggcaaa acttcctcct aatagcatct ttctaaagtc cagatcaaac
      721 ttggtattat tccatctctt gcggaagaag aatacgctca caccacttac aaaaatatag
      781 ataaaagaga tataaatggg cactatcccg gtaaataagt aaaaagtaag aataacaggc
      841 actgtaaaca cagaaaccaa cacaatcacc cttaaccaac ctagatttcg gaaataatgc
      901 agctgaaaaa ctttatttag taaactataa cctagtgcat aacacaagaa taagatgacg
      961 gaagtaccga atacataagc caaacttctt gccatactgg cattgccgat ttcaacatgc
     1021 caccaagggt agccatgaaa tatggcttgt ccccaaccgt aacagtaagc ggtagcaaaa
     1081 ctagttaatg taaaaaatgc aagagaaaat gaagaattga taattttatt aatgtgttta
     1141 tttagcataa caaagaatgt ctatttccat taaaacctaa ctatttttga ttactataat
     1201 aacccgtatt acacaaaaaa caaacattta attcacacca aattagaaaa tttgctttag
     1261 taaggttgaa aatataactc taaaacacga taataaaaag cttctctgct agcaatggct
     1321 agactgcttc atcgtcagtt tcgccggtac gggtgcggat aacttgttca atattcgcta
     1381 cataaatttt gccatcaccc acttgcccag aataggatgc attgagaatg gcatcgatca
     1441 cttcatcggt ttggtaatta gaaaccaata tctccacctt aattttagga cgaaagtcaa
     1501 tgcggctcat ttggctaagc tcttgttcgg tatgcccata ttggcgtcca aagcctttta
     1561 cttcggtaat agtcattcct tgaataccga tttctgaaag tgcatcttgc acttggtcta
     1621 attttgaagg ttggataatg gtagtaatca gtttcatatt atatccttct ctgtttgagt
     1681 tgccgtaagt ataaaaagct attgaggggt atgcaaggta ggaggtattt tctccgtgaa
     1741 atattctgcc aaatctcccc cacatacaag cggttacttt ttccaaaaat tttgcaattt
     1801 ttttattttt gcccttgaac agtgcatttt cgtccctatt tatgatttcg tctgaacggg
     1861 aaatgcaatc ccgtttctta ttcaaactga atttattatt ataggaatca taaaaatggg
     1921 taaaatcatt ggtattgact taggtacaac aaattcttgt gttgcggtaa tggacggcga
     1981 caaacctcgt gtaattgaaa atgcggaagg ggcaagaaca acgccatcta tcatcgctta
     2041 caccgataaa gaaaccttag ttggtcagcc ggcaaaacgt caggcaatta ctaacccgaa
     2101 aaatacttta tttgcaatca agcgtttaat cggccgtcgt tttactgatg ctgaagtgca
     2161 acgtgatatt gaaattatgc cgtttgaaat cagcaaagca gataacggcg atgcgtgggt
     2221 aaccgtaaaa ggcgataaat tagcaccgcc gcaaatctct gctgaaatct tgaaaaaaat
     2281 gaagaaaacc gcagaagatt tcttgggcga accggtaacc gaagcggtta ttactgtgcc
     2341 tgcatacttt aacgatgcac aacgtcaggc aactaaagat gccggtcgta ttgcaggttt
     2401 agatgtaaaa cgtatcatca acgaaccaac agcggcagcg cttgcttatg gtttagattc
     2461 taagaaagag aaccaaacga ttgctgttta cgacttaggt ggtggtacat tcgatatttc
     2521 gattatcgaa attgataact ttgacggcga gcaaactttt gaagtgcgtg caaccaacgg
     2581 cgatactcac ctaggtggtg aagacttcga taaccgtgta atcaactact tagtggaaga
     2641 attccaaaaa gaacaaggcg ttgatttacg caacgaccca atggcaatgc aacgtgtgaa
     2701 agaagcagcg gaaaaagcga aaatcgaact ttcttctgca caagaaactg aagtgaacct
     2761 tccatacatc acggcagatg caaccggccc gaaacactta aacattaaag taacccgtgc
     2821 gaaattggaa tctttagttg aagatttagt aaaccgttcg ttagagccgt taaaaaccgc
     2881 tttagctgat gccggtttat cagtaggcga catcaacgat gtgattttag tcggtggtca
     2941 aacccgtatg ccgttagtac agaaaaaagt ggcagacttc tttggcaaag aaccgcgtaa
     3001 agacgttaac ccggacgaag ctgtggcaat cggtgcggcg gttcaaggcg gtgtgttaag
     3061 tggttcggta acagacgtat tgttattaga cgttactccg ctttcacttg gtatcgaaac
     3121 aatgggtggt gtaatgacta ccttaattga gaaaaacact acgattccaa ccaagaaatc
     3181 acaagtgttc tcaacagcgg aagataacca atctgcggta actatccacg tgttacaagg
     3241 tgagcgtaaa cgtgcagcgg ataataaatc tttaggtcaa ttcaaccttg aaggtattaa
     3301 ccctgctcca cgcggtatgc cacaaattga agtaaccttt gatattgatg ctaacggtat
     3361 tatcaatgtc tctgcaaaag ataaaaacac tggcaaagag caacaaatca aaattcaagc
     3421 atcttcaggc ttaagcgatg ctgaagttga acaaatggtg cgtgatgcag aagcgaatgc
     3481 ggaagcagac aaaaaatttg aagagttagt tcaagctcgt aaccaagcag acggtattgc
     3541 tcacgcaacc cgtaagcaaa ttaccgaagc aggcgatgcg ttaaacgcag acgataaagc
     3601 gaagatcgaa gcggctattt ctgagttaga aaccgcagct aaaggcgaag ataaagccga
     3661 gatcgaagcg aaaatcgaag cgttaatcaa agcttcagaa ccgttaatgc aagcagcaca
     3721 agcaaaagca caaggcggcg agcaaccaca acaatctcaa aaagatgacg gcgtggtcga
     3781 tgcggaattt gaagaagtga aagataataa ataatcttgc gtaacttgta ggggcgaaat
     3841 atctttcgcc ccttttgtgt agatatatac cacctagcac gagccgtgct aggttacaca
     3901 taattcagcc cctttggggc tgtgcaagcg gtgcttttca aaggaaattt tacaaatgct
     3961 aaaactctac cctacaacgg aaaatgtaca gccaccgttt tataaaatat acgatcataa
     4021 aagtggcgaa acggtcattg ccacagaaac ggaaaacagc aataccgcga ttttaatgga
     4081 cgattttgtt tggtttgagc aaattccaac taccgaagct cttttggcag acacttggtc
     4141 tgtgattgaa aaccgttcca aacaaggttt gctcaaacga gcttacacca aagattttga
     4201 aaaacattta gcagacggca aagtagaaat ttatattgcg gtgaatccgc attgttaggc
     4261 ttttgatagc gcaagcgtcc acgcttgtgt catcttgagc catcttggct agatcccatt
     4321 taattatata aaactctctc cccttgtggg agagagaccg aaaaatattt cgttcagaaa
     4381 tatttttcag agagaggggg aattaaccat cctacccctc tcccacaagg ggcgagggca
     4441 agcggtcaaa aacacagaaa aatttacaaa cggaacaaca atggcaaaga aagattatta
     4501 cgaagtcctt ggactgtcta aaggggcaag cgagaaagac atcaaacgag catataaacg
     4561 tttggcggca aagcatcacc cggataaaaa ccaaggcagt aaagagtcgg aagagaaatt
     4621 taaagagatt accgaagcct atgacgtgct gaccgacagc gagaaaaaag cgatgtacga
     4681 ccaatacggt cacgccgcct ttgaacaagg cggtgccggt gcaggcggat tcggtggctt
     4741 tggcggcggt ggtttcggtg gttttgaaga catcttcagc gaaatgtttg gcggtggctt
     4801 tggtggcggt ggacgtcgcc aacgtgtggt acgtggcgat gatttacgtt acgacatcga
     4861 gatcaccctt gaagaagctg tgaaaggctg taaaaaagat attcgcattc aaaccttagc
     4921 tgaatgtgat acttgtcatg gtacaggggc ggaagcaggg agcaaagtgg aaacctgttc
     4981 gcattgtcac ggctccggca gagttcgccg tcagcaaggt ttctttgtga ctgaggcagt
     5041 ttgtccaagt tgtcacggta caggtaaacg cattgaaaaa ccgtgccgtt cttgccacgg
     5101 cgatggacgt gtacagaaag cgaaaaacct ctctgttacc attccggcag gtgtggatac
     5161 cggtaatcaa cttcgcttat cgagagaggg agctgcaggc gaaaatggcg caccggcagg
     5221 cgatttatat gtggtgattc acgttaaaga acacgatatt tttgagcgtg acggttcgaa
     5281 tttatactgt gaagtgccga ttagctttac ccttgcagct ttaggcggtg aaattgaagt
     5341 gccaacttta gacggcaaat taaaactcaa aattccggca gaaactcaaa ccggtaaact
     5401 attccgtgta cgaggcaaag gggtaacaag ccctcgtggt ggctacgcag gggatttaat
     5461 ctgcaaagtg gtggtcgaaa cgcctgtgaa tttaaccgaa gaacagaaag cactattacg
     5521 acaatttgaa gagagtttag aaggacaagg taaacatcgt ccgaaacacg aaggtttctt
     5581 tgatggtgtg aagaaattct ttgataactt aggcaaataa aatcataaaa agtacatatt
     5641 tcttaaatat gtactttttt attatctatt ctttgttgaa atctacttct cggccg
//
LOCUS       DANMBQ010000141         5502 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.142, whole genome shotgun sequence.
ACCESSION   DANMBQ010000141 DANMBQ010000000
VERSION     DANMBQ010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5502)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5502)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5502
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.142"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            7..525
                     /gene="hutZ"
                     /locus_tag="PXE92_002271"
     CDS             7..525
                     /gene="hutZ"
                     /locus_tag="PXE92_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein HutZ"
                     /protein_id="HDL5761470.1"
                     /translation="MTTNRQEVLQNRLGPEIEELKQQIKTIMLATIDKDGVPNVSYAP
                     FVINNGEYQVLITTIARHARNLQEVPKVSLMLIEDESKSRQIFARRRLTFDATVRMIE
                     RTDEEWNNSIAALKARHGDLVDELSNMQDFKLFSFKPTAGLFVKGFGKAFDVGVDDLI
                     NVVHLDQGHQTA"
     gene            675..3287
                     /gene="pepN"
                     /locus_tag="PXE92_002272"
     CDS             675..3287
                     /gene="pepN"
                     /locus_tag="PXE92_002272"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HDL5761471.1"
                     /translation="MQPKAKLRKDYRAPDFTITDIYLDFQLDPDRTFVTSKLTVVRKN
                     PEATTLRLDGHSFDFLSLKYNGEPFSAFQKDDESLTLNLADVPAERFELEIETALNPA
                     QNTSLQGLYKSGDGFCTQCEAEGFRQITYMLDRPDVLAKYTTKITASKSKYPYLLSNG
                     NHIAQGDLHDGRHWVEWQDPFFKPSYLFALVAGDFDLLQDKFITKSGREVTLEIYVDR
                     GNLDRAPWAMESLKRSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKF
                     VLAKPETATDTDYLDIEAVIAHEYFHNWTGNRITCRDWFQLSLKEGLTVFRDQEFTSD
                     LWSRSAKRIEDVRLLRTVQFAEDASPMAHPIRPEKVIEMNNFYTVTVYEKGAEIIRMI
                     HTLLGEEKFQQGMQLYVARHDGSAATCEDFVKAMEDASGVNLEQFRRWYSQSGTPELT
                     ISDEYDETRKAYRLHISQMTPATHDQMDKLNLHIPLKVALYGEQDGKRIPLQYELLTV
                     SDVLDVTAEHQTFEFHNVTQRPVPALLCDFSAPVRLDYNYTTEQLLTLLKHAENDFVR
                     WDAAQMLYTNELRENLSRYQQHQPLSFSEGLVNALTFVLDNSASLPELTALTLTLPKE
                     TEFAESFKTIDPQGIAVVREFMQHSIAHALQDKLLAVYHQNQCGEYQVVAEDIAKRAL
                     RNACLSYLAFTDLGNALVHKHYNNADNMTDTLAALQAATKAQLSCRDALLADFEQKWK
                     HDGLVMDKWFMLQATRPDDDVLSIVQNLMEHPSFNFNNPNRLRSLVGAFCGQNPKAFH
                     AIDGSGYRFLVDTLIKLNESNPQVAARLIEPLIKLSRYDNQRQTLMRRGLERLRELDN
                     LARDLFEKIEKALD"
     gene            complement(3347..3619)
                     /locus_tag="PXE92_002273"
     CDS             complement(3347..3619)
                     /locus_tag="PXE92_002273"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HDL5761472.1"
                     /translation="MVAKLFSVYGRVQGVAFRFFTLQEANRLGIKGYVRNRDDGSVEV
                     VAEADEQTIAQLENWLQQGSPAAKVERVIVSDYLGSERFKRFEVRY"
     gene            complement(3673..5307)
                     /locus_tag="PXE92_002274"
     CDS             complement(3673..5307)
                     /locus_tag="PXE92_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700110.1"
                     /note="is involved in the transport of the murein peptide
                     L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HDL5761473.1"
                     /translation="MQSKFSLSLLTTSLVLGLSANVFAAKVPEGTTLAEKQEITINNG
                     FEPSSFDPHKIEGVPESQVAYQLFEGLVTKDSDGNIQPGVAESWENTPDYKTWTFKLR
                     QDAKWSNGDAVTAHDFVFAWQRLVNPLTASPYSSYLTYLNVENAQDIIDGKKKPEELA
                     VKAIDDHTFQVQLSQPVPYAVELATHSSLLPVHKATVEKHGDAWVQKGNLVGNGAYTL
                     ADHVINEKIVFERNKNYWNDKETVINKATFLAIANAATDVSRYRAGDLDMTNYALPPE
                     QFATLKKEIPNEVFTARTLSTYYYEINHKRAPFDNVKVREALNLALDRTIITDKVLGQ
                     GQTPTYVFTPPYIHEGEKIQQPAYSKDSMADRKAKALKLLEEAGYSKANPLKFTILYN
                     TNDNHKKIAIAVSSLWKQGTDGIVDVKLENQEWKTFLDTRRNANYDVSRAGWSADYNQ
                     ATTFVNYFLSNSSNNTAFYKSQAYDDAVAESYKATDAAGRAAAYAKAEEQLAKDYAII
                     PIYNYVNPRLVKPYVKGYEGKDPQDDILLRNLYIVK"
BASE COUNT         1610 a         1179 c         1094 g         1619 t
ORIGIN      
        1 tattttatga caaccaaccg tcaagaggtc ttacaaaacc gtttaggtcc agaaattgaa
       61 gaattaaaac aacaaatcaa aactataatg cttgcaacca tagataaaga tggtgtaccg
      121 aatgtgagct atgccccttt tgtaattaat aacggcgaat atcaagtctt aatcactact
      181 attgcccgtc acgctcgtaa tttacaagag gtgccaaaag tctctttaat gctaattgag
      241 gatgaaagta agagccgtca aatttttgcc cgtcgtcgct taacctttga cgcaacagtg
      301 cgaatgattg aacgtactga tgaggaatgg aataatagca ttgcagcact taaagctcgt
      361 cacggcgatt tagttgatga actgtcaaat atgcaagatt tcaagctctt tagctttaag
      421 ccaacggcag gcttatttgt aaaaggattt ggtaaagcct ttgatgttgg tgttgatgac
      481 ttaattaatg tcgttcattt agaccaaggc caccaaactg cctaattgcg aaataaactc
      541 acggctataa ataatcctat ttatagccgt ttttattgcg acaagcggtc aaattttttg
      601 gaaaatttac cgctatttta gtacaataac gacactattc tatgagctaa acgcaactaa
      661 aaaaaggaaa tcctatgcaa cctaaagcga aactcagaaa agattatcga gctcccgatt
      721 tcactattac tgatatttat cttgacttcc aacttgaccc agatcgcact tttgtcacct
      781 caaaactaac tgtcgtgcgt aaaaatcctg aggcgacaac acttcgttta gacggtcata
      841 gtttcgattt cctttcgctt aaatataacg gcgagccgtt ttccgccttt caaaaagatg
      901 atgaatcttt aaccttaaat ttagccgatg tgcctgccga gcggttcgag cttgaaattg
      961 aaaccgcatt aaatccggca caaaacacct cgttacaagg tttgtataaa tcgggcgacg
     1021 ggttttgcac ccagtgtgag gctgaaggtt tccgccagat tacctatatg ctcgaccgcc
     1081 ctgatgtact tgcaaaatat acgacaaaaa tcaccgctag taagagcaaa tacccgtatc
     1141 tgctttctaa cggcaaccac attgcccaag gcgacttgca cgatggcaga cactgggtgg
     1201 aatggcaaga tccgttcttt aaaccaagct atttatttgc cttggttgcg ggggattttg
     1261 acttactcca agataaattc atcaccaaaa gcggacgtga agtcacgctt gaaatttatg
     1321 tcgatcgtgg aaatttagac cgtgcacctt gggcgatgga gagcttaaaa cgttcaatga
     1381 aatgggatga agagcgtttc ggtttggaat acgatttaga tatttatatg attgttgccg
     1441 ttgatttctt caatatggga gcaatggaaa acaaagggtt aaatattttc aattccaaat
     1501 ttgtattggc aaaaccggaa accgcaaccg atacggatta tttagatatt gaagcggtga
     1561 ttgcccacga atacttccat aattggacgg gcaaccgcat tacctgccgt gattggttcc
     1621 aactaagctt aaaagagggc ttaaccgtct tccgtgatca ggaatttacc tccgatttat
     1681 ggtctcgttc ggcaaaacgg attgaagatg tgcgtttact gcgtaccgta caatttgccg
     1741 aagatgccag cccgatggct cacccgattc gcccggaaaa agtgattgaa atgaataatt
     1801 tctacaccgt gactgtgtat gaaaaagggg cggaaattat tcgtatgatt cacaccctgt
     1861 taggcgaaga aaaattccag caaggtatgc aactttatgt ggcaagacac gatggttctg
     1921 cggcaacttg tgaagatttc gttaaagcaa tggaagatgc ttcaggcgtt aatcttgaac
     1981 aattccgccg ttggtatagc caatccggca cgcctgagct caccatttcc gatgaatatg
     2041 atgaaacccg caaggcatac cgcttgcata tttcacaaat gacaccggca acccacgatc
     2101 agatggataa actcaatctg catattccgc ttaaagtagc gttatatggt gaacaggacg
     2161 gtaaacgcat tccgttacaa tatgaattat tgaccgtaag cgatgtgtta gatgtaaccg
     2221 cagaacacca aacctttgag tttcataatg taacacaacg cccggtgcct gcattactgt
     2281 gtgatttctc tgcaccggta cggttagatt acaactatac caccgagcag cttttaacct
     2341 tactcaaaca cgctgaaaat gattttgtac gctgggatgc agctcaaatg ctctatacca
     2401 atgaactgcg tgaaaattta agccgttatc agcaacatca accactcagc ttctcagaag
     2461 ggttggtgaa tgccctaacg ttcgtgttgg ataactcagc aagcctgccg gaactaactg
     2521 cattaaccct cacattgcca aaagaaaccg agtttgcaga atcgttcaaa accattgacc
     2581 cacaaggtat tgcggttgtg cgtgaattta tgcagcattc cattgctcac gccttgcaag
     2641 ataagttatt agcggtatat caccaaaacc aatgcgggga atatcaagtc gtggctgaag
     2701 atattgctaa acgagccttg cgtaatgctt gcttaagcta tttagccttt actgatttag
     2761 gcaacgcgtt ggtgcataag cattacaata atgccgataa tatgactgat acgcttgctg
     2821 cattacaagc cgcaaccaaa gcccagctaa gttgccgtga tgcattatta gccgattttg
     2881 agcaaaaatg gaaacatgat ggtttagtga tggataaatg gtttatgcta caagccaccc
     2941 gaccggacga cgatgtgtta tccatcgtgc aaaatttaat ggaacaccca agttttaact
     3001 ttaataaccc gaaccgttta cgttcattag taggtgcatt ctgcggtcaa aacccgaaag
     3061 ccttccacgc cattgacggt tcaggctatc gtttcttggt agatacgctg attaaactta
     3121 acgaaagtaa cccacaagtt gctgctcgac ttattgagcc gttaattaaa ctctcacgct
     3181 acgataacca acgccaaacc ttgatgcgtc gtggtctaga acgcctgcgt gagctggata
     3241 atttagcacg agatctgttt gagaaaattg aaaaagcgtt agattaaacc aagcaataca
     3301 agcggtgtcg tttgcaaatt tttttacaaa tgacaccgct tgttagttaa taccttacct
     3361 caaacctttt aaacctttct gagccaagat aatcgctcac aattacccgt tccacctttg
     3421 cagcaggtga gccttgttgt aaccaatttt ccagttgagc gattgtctgt tcatccgctt
     3481 cagctaccac ttctaccgag ccgtcatcac gatttctgac atagcctttt atgcctaatc
     3541 gattcgcttc ctgcaaggta aaaaaccgaa aagcgacacc ttgaacccgt ccgtaaaccg
     3601 agaataattt tgcgaccatt cttcccccat aaaaataggc tgcttatttt tcaataaaca
     3661 gcccataatg tcttatttca cgatgtagag gttacgcagt aaaatatcat cttgcggatc
     3721 tttaccctca tagcctttca cgtaaggttt caccaaacgt gggtttacat agttataaat
     3781 cggaataatc gcataatctt tggctaactg ctcctctgct tttgcataag cagctgcacg
     3841 accagctgcg tctgtcgctt tgtaagattc tgctaccgca tcatcataag cttggctctt
     3901 ataaaacgca gtattgttgc tggagttcga taagaaatag ttcacaaagg tggttgcttg
     3961 gttatagtct gccgaccaac ctgcacgaga aacatcataa tttgcattgc ggcgggtatc
     4021 taagaatgtt ttccactctt ggttttctaa tttcacatca acaatgccgt ctgtgccttg
     4081 tttccataat gatgaaactg caatcgcaat tttcttgtgg ttgtcgttgg tattataaag
     4141 aatagtaaat tttaacgggt tcgctttact gtaaccggct tcttccaata atttcaacgc
     4201 tttggctttt ctatctgcca ttgaatcttt ggaataagca ggttgctgga ttttttcacc
     4261 ctcgtgaata taaggcggtg taaatacata agttggtgtt tgaccttgtc ctagcacttt
     4321 atcggtaata atggtgcgat ctaaagctaa gtttaacgcc tcacgcactt tcacattatc
     4381 aaacggtgct cgtttatggt taatttcata gtaataagta gaaagggttc ttgccgtaaa
     4441 cacttcgttt ggaatctctt ttttcaaggt tgcaaactgc tccggtggaa gagcatagtt
     4501 ggtcatatcc aaatcaccgg cacggtaacg tgaaacatca gttgcggcat tagcaatggc
     4561 taagaaagtc gctttattaa tcacggtttc tttatcattc caataatttt tattacgctc
     4621 aaacacgatt ttttcattaa taacgtgatc ggctaaggta taagccccgt ttccaaccag
     4681 attgcctttt tgcacccacg catcgccgtg tttctcaacg gttgctttgt gtacaggtaa
     4741 taaagaagag tgtgttgcca gctcaactgc atacgggaca ggttggctta actgcacctg
     4801 gaaagtatga tcatcaatcg ctttaactgc tagttcctcc ggttttttct tgccgtcaat
     4861 aatatcttga gcattttcta cattgagata agttaaatag cttgaataag gtgaagccgt
     4921 aagtggatta accaaacgct gccaagcaaa tacgaaatcg tgagcagtta cggcatcacc
     4981 gtttgaccat ttagcgtctt ggcgtaattt gaacgtccac gttttgtaat ccggtgtatt
     5041 ttcccaactt tctgccacac ccggctgaat attgccgtca gaatctttcg ttaccaatcc
     5101 ttcaaataac tgataagcaa cttgcgattc cggcacgccc tcaattttat gtggatcaaa
     5161 acttgatggc tcaaaaccat tattaatcgt aatttcttgt ttttctgcaa gcgttgttcc
     5221 ttcaggcact ttggctgcaa acacatttgc cgataagcct aacactaatg aggttgttaa
     5281 taaggaaagc gagaattttg actgcatatt tgatctccat tgatgaatat tggcttgcaa
     5341 ccagccgatt tgttctaatt aattttttta agtctaggca ttattatttt gattgcaagg
     5401 aattttttta aaaaatgtga tagatatcac ctttcaatgc aaaaattgca taaaaaaatc
     5461 ccgaagaaaa tagctctata aactctgata atggctagat aa
//
LOCUS       DANMBQ010000142         5443 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.143, whole genome shotgun sequence.
ACCESSION   DANMBQ010000142 DANMBQ010000000
VERSION     DANMBQ010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5443
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.143"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            124..1257
                     /gene="carA"
                     /locus_tag="PXE92_002275"
     CDS             124..1257
                     /gene="carA"
                     /locus_tag="PXE92_002275"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDL5761474.1"
                     /translation="MFKPAILVLTDGSVFSGKSIGADGHTIGEVVFNTAMTGYQEILT
                     DPSYTKQIVTLTYPHIGNTGINLEDKESPNVCASGLIIRDLPLLHSNFRASSSLSDYL
                     IQQNIVAIADIDTRRLTRILREKGAQAGCILVGDATEENIANALAFANSFGSMAGKDL
                     AQSVTCNELYKWTDGEWQLGKGYVPQQQTEFHVVAYDYGVKHNILRMLAERGCRLTVV
                     PAKTSAEAVLALNPDGIFLSNGPGDPEPCDYAITAIRKLLETQKPIFGICLGHQLLGL
                     AAGGKTKKMVFGHHGANHPVQDLDSQKVLITSQNHGFEVDESSLPSNVRVTHRSLFDG
                     TVQGIELTDRPAFSFQGHPEASPGPNDVAYLFDRFVSEMKKVK"
     gene            1360..4566
                     /gene="carB"
                     /locus_tag="PXE92_002276"
     CDS             1360..4566
                     /gene="carB"
                     /locus_tag="PXE92_002276"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDL5761475.1"
                     /translation="MPKRTDINTILIIGAGPIVIGQACEFDYSGAQACKALREEGYKV
                     VLVNSNPATIMTDPNMADVTYIEPIEWKTVEKIIEKERPDAILPTMGGQTALNCALDL
                     SKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMTKIGLNTPKSFVCHSFEEALAAQE
                     QVGFPTLIRPSFTMGGSGGGIAYNRDEFIAICERGFEASPTHELLIEQSVLGWKEYEM
                     EVVRDRADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIG
                     VDTGGSNVQFAINPANGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLNE
                     LRNDITGGLIPASFEPTLDYVVTKIPRFAFEKFANADDRLTTQMKSVGEVMAMGRTFQ
                     ESLQKALRGLETGICGFNLLSEEPEKIRRELANPGPNRILYVADAFGAGFSLEEVHHY
                     SKIDPWFLVQIQDLVLEELALEKKQFSDLDANEIRRLKRKGFSDKRIAQLTKVSEKMV
                     RDYRHTYAILPVYKRVDTCAAEFASDTAYLYSTYEEECEAKPSDRKKVMILGGGPNRI
                     GQGIEFDYCCVHASLALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIV
                     RVENPWGVIVHYGGQTPLKLANALSDAGVNIIGTSADSIDAAEDRERFQQILNTLGLK
                     QPANRTARNALEAVALANEVGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSN
                     DSPILLDHFLNNAIEVDVDCICDGENVLIGGIMQHVEQAGIHSGDSACSLPAYSLSGH
                     VLDEIRKQTNAMAFALGVKGLMNVQFAVQNEVVYVLEVNPRASRTVPFVSKATGRPLA
                     KIAARVMAGETLADLNALEEIIPSKFFVKEAVFPFIKFPGVDTILGPEMRSTGEVMGI
                     GNTFAEAFFKAQLGAGERIPKVGKVFMSVIEEHKPALIYIAKRFQEQGYGLCATFGTA
                     NFLRQHGIAVQTVNKVREGRPHIVDAIKNGEIALVINTVSGEPEVIADSHSIRRTALQ
                     QRVPIYTTLAGADAISYGVKHINEFDVYSVQELEQKAN"
     gene            complement(4641..>5443)
                     /locus_tag="PXE92_002277"
     CDS             complement(4641..>5443)
                     /locus_tag="PXE92_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="L-arabinose isomerase"
                     /protein_id="HDL5761476.1"
                     /translation="DRLYNVEDSLQENGSARESLAYSARIEIGLKTFLDNGGFKAFTD
                     NFQNLNGIKQLPGLAVQRLMEQGYGFGGEGGWKTAALVREVKVMGYGLPNGSSFMEDY
                     TYDLDEQNQVVLGAHMLEVCPSIAKEKSTLAIRPLGIGGKADPVRLIFSSKAGKAVNA
                     TVVDMGDRFRMVVADLDAIASPNPMPNLPVGHAFWKLQPNFYVGTQAWILAGGAHHSV
                     FSLDIDADMLRMFAEYFGIEFIHINQNTELPQLKNELRWNDLAYKFTK"
BASE COUNT         1560 a         1246 c         1223 g         1414 t
ORIGIN      
        1 aaaaagaaga aagaaatagg caaaataact aatttttact tgaatgcaaa cgtttgcttg
       61 attaaactta gtcgcctact tctaaggcta cacagataaa atttgatgat taggagtaaa
      121 acaatgttca aaccagcaat tctggttctc actgacggtt ctgtcttttc cggcaaatcc
      181 attggtgctg acggtcacac tatcggtgaa gtggtattta acactgcgat gaccggttat
      241 caagaaatcc ttaccgatcc ttcttatact aaacaaatag tcaccctgac ttacccccac
      301 attggcaata ccggcattaa tttagaagat aaagaatccc ccaatgtttg tgcctccggc
      361 ttaattattc gtgatcttcc tcttctccat agcaacttcc gtgcgtcctc ctcactttca
      421 gattatctca ttcaacaaaa cattgtcgct attgccgata ttgatacccg ccgtttaacc
      481 cgaattttac gcgaaaaagg ggcacaagcc ggttgtattt tagtaggcga tgccacagaa
      541 gagaatattg ctaacgcttt ggcatttgcc aacagtttcg gttctatggc tgggaaagat
      601 ttggctcaaa gtgtcacctg caatgaatta tataaatgga cagatggtga atggcaatta
      661 ggtaaaggtt atgtaccgca acaacaaacc gagttccacg tagttgccta tgattacggt
      721 gtaaaacaca acattttgcg aatgcttgcc gaacgaggct gtcgcttaac cgttgtgccg
      781 gcaaaaacct ctgctgaagc tgtgcttgcg ttaaatccgg acggtatttt cctttctaac
      841 ggcccggggg acccggagcc gtgcgattat gccattaccg caatccgaaa attattggaa
      901 acgcaaaaac ccattttcgg catttgctta gggcatcaac ttttaggttt agcggcaggc
      961 ggtaaaacca aaaaaatggt gtttggtcat cacggagcta atcacccggt acaagattta
     1021 gacagccaaa aagtgctcat caccagccaa aaccacggtt ttgaagtaga tgaatccagc
     1081 ttaccatcta atgtgcgagt gactcaccgc tcactgtttg acggcacggt gcaggggatt
     1141 gaactcactg atagaccggc gttttcgttc caaggtcacc cggaagccag cccggggccg
     1201 aatgatgttg cctatttatt tgaccgattt gtcagtgaga tgaaaaaagt gaagtaagga
     1261 cgtacctatg tgtgtccatc aagcggtcga aatttgcaaa aaacttacca aaaatgaccg
     1321 cttgtagcct gaaataaacg agataaaaga gagcccaaaa tgccaaaaag aacagacata
     1381 aacactatcc taattatcgg tgccggtccg attgtgatcg gtcaagcgtg tgaatttgac
     1441 tactccggag cccaagcgtg caaagcgttg cgtgaagaag ggtataaagt ggtgttggtg
     1501 aactccaacc ctgcaaccat tatgaccgac ccgaatatgg cagatgtgac ttacattgag
     1561 ccgattgaat ggaaaacggt tgaaaaaatc attgaaaaag aacgccctga tgccatttta
     1621 ccgactatgg gcgggcagac agcgttgaac tgtgccttag atctttcgaa aaacggtgtg
     1681 ctgaaaaaat ataatgtaga gctgatcgga gctaccgaag acgcgattga taaagccgaa
     1741 gatcgtggtc gttttaaaga agcaatgact aaaatcggct tgaatacgcc aaaatcattc
     1801 gtttgccaca gttttgaaga ggccttagca gcacaagagc aggttggctt tccaaccctg
     1861 attcgcccct ctttcacgat gggaggctcc ggcggtggta ttgcttataa tcgagatgaa
     1921 tttatcgcca tctgcgaacg tggttttgaa gcctcgccta ctcacgaatt actgattgaa
     1981 caatccgtac taggctggaa agagtatgaa atggaagttg tgcgtgaccg tgccgataac
     2041 tgcattatcg tctgctcgat tgaaaacttc gacccgatgg gtgtacacac cggcgactcc
     2101 attaccgttg ctccggcaca aacgctaacc gataaagagt atcaaattat gcgtaacgct
     2161 tcgctggcgg tattgcgtga gatcggcgtg gacaccggcg gttcaaatgt gcaatttgcg
     2221 attaaccctg caaacggcga gatgatcgtc attgaaatga accctcgtgt gagccgttct
     2281 tctgcactcg catctaaagc caccggcttc ccgattgcca aagttgcggc gaaattggct
     2341 gtaggctaca cactcaacga attgcgtaac gacatcaccg gagggctgat tccggcttca
     2401 ttcgagccga ctttagatta tgttgtgacc aaaattccac gcttcgcctt tgaaaaattt
     2461 gccaatgcag acgaccgatt aaccactcaa atgaaatcgg taggcgaagt aatggcaatg
     2521 ggaagaacct tccaagagag tttacaaaaa gccttgcgag gcttggaaac cggcatttgc
     2581 ggctttaact tgctttccga agagcctgaa aaaatccgcc gtgaacttgc caaccccgga
     2641 ccaaaccgta ttttgtatgt tgccgatgcc tttggagcag gcttttcatt ggaagaagtt
     2701 caccactatt ctaaaatcga cccgtggttc ttggtgcaaa ttcaagactt agtacttgaa
     2761 gaattagcgt tagagaaaaa acagtttagc gatctagatg ctaacgaaat ccgccgctta
     2821 aaacgcaaag gcttctcaga caaacgtatc gcacagctta ccaaagtcag cgaaaaaatg
     2881 gtgcgggatt accgccatac ttacgctatt ctaccggtgt ataaacgggt agatacctgt
     2941 gcagccgagt ttgcctcaga tacggcttac ctctattcta cttacgagga agagtgtgaa
     3001 gccaaaccgt ctgatcgcaa aaaagtgatg attttaggcg gcggaccaaa ccgtatcggg
     3061 caggggattg aatttgacta ctgctgcgtt cacgcctcgc ttgctctgcg tgaggcaggt
     3121 tatgaaacca ttatggtgaa ctgcaaccct gaaaccgttt ccaccgattt cgacacctcc
     3181 gaccgcctct atttcgagcc gctaacatta gaagatgtac tggaaattgt gcgtgtagaa
     3241 aacccgtggg gcgtgattgt gcattacggc ggtcaaacac cactgaaatt agcgaatgcc
     3301 ttatctgatg ccggtgtaaa cattatcggg acttccgccg acagcattga tgccgccgaa
     3361 gaccgtgaac gtttccaaca aattctaaac actctcggtt taaaacagcc ggcaaatcgc
     3421 accgcccgta atgcgttgga agcggtggca ttggcaaatg aagtaggcta tccgctggtg
     3481 gttcgcccat cttatgtgct aggtggtcgg gcaatgcaaa ttgtgtataa cgatgaagag
     3541 ctaaaccgct atatgcgtga agcggtatcg gtttccaacg acagcccgat tttactcgac
     3601 cacttcctca ataatgcgat tgaagttgat gtggattgca tttgtgacgg cgaaaatgta
     3661 ctcattggcg gcattatgca acacgttgag caagccggta ttcacagtgg cgatagtgcc
     3721 tgctcactac ctgcctattc gttaagcggt catgttttgg acgaaattcg caaacaaacc
     3781 aacgcaatgg cgtttgctct cggtgtgaaa ggcttgatga acgtacaatt tgcagtacaa
     3841 aatgaggtcg tttatgtgtt ggaagttaac cctcgagcca gccgtactgt accgtttgtc
     3901 agcaaagcta ccggtcgccc actggcaaaa atcgctgctc gcgtgatggc tggtgaaacc
     3961 cttgccgact taaatgcatt agaggaaatt atcccaagca aattcttcgt taaagaagcg
     4021 gtattcccat tcatcaaatt cccgggtgtg gataccattc tcgggcctga aatgcgttct
     4081 accggcgaag tgatgggcat aggtaatacc tttgctgaag cgttcttcaa agcacaactg
     4141 ggtgccggtg aacgaattcc aaaagtcggc aaagtgttta tgtcggttat tgaagagcat
     4201 aaacctgctt taatttacat tgccaaacgt ttccaagaac aaggctacgg tttatgtgcc
     4261 accttcggca ctgcaaactt cctacggcaa cacggaattg cagtccaaac ggtaaacaaa
     4321 gttcgtgaag ggcgaccgca tattgtcgat gcgatcaaaa acggcgaaat tgcgttggta
     4381 atcaacaccg tcagcggcga gcctgaagtg attgccgaca gccactctat ccgccgtacc
     4441 gccttgcaac aacgtgtgcc tatttacacc acccttgcag gtgctgatgc tatctcctac
     4501 ggcgtaaaac atatcaatga gtttgatgtg tattcagtgc aggaattaga acaaaaggct
     4561 aactaaaata aagctaaaat gacaagcggt cagattttgc aaatttttta caaattctga
     4621 ccgcttgtgt ttgtagagga ttatttagta aatttatatg ctaaatcatt ccagcgtaat
     4681 tcatttttga gttgtggtag ctcggtattt tggttgatat ggataaactc aataccaaaa
     4741 tattcagcga acattcgtag catatcggca tcaatatcta aactaaatac actatgatga
     4801 gcaccgccgg ctagaatcca tgcttgagta cctacataaa aatttggttg aagcttccaa
     4861 aaagcatgcc caactggtaa atttggcatt ggatttggtg aggcgatagc gtctaaatcc
     4921 gcaacaacca ttctaaaacg gtctcccata tctacaacgg ttgcattcac tgcttttccc
     4981 gccttactac tgaaaattaa gcgaacagga tctgccttac cgccaatacc tagcggtcga
     5041 atggctaatg ttgatttctc tttggcaata gacggacaaa cttcaagcat atgagccccc
     5101 aataccactt ggttttgttc atctaaatca taggtgtagt cttccataaa ggaagaaccg
     5161 tttggtaagc cataacccat cactttcact tcacgcacaa gagctgcggt tttccaacct
     5221 ccttcaccac caaatccgta gccttgttcc attaaacgct gaacagccaa gcccggtaat
     5281 tgtttaatcc catttagatt ttggaaatta tcagtaaaag ctttaaatcc accattatct
     5341 aagaatgttt ttaagccgat ttcaatacga gcagaatatg cgagagattc tcttgctgaa
     5401 ccattttctt gcaagctatc ctcaacatta tacaagcggt cag
//
LOCUS       DANMBQ010000143         5371 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.144, whole genome shotgun sequence.
ACCESSION   DANMBQ010000143 DANMBQ010000000
VERSION     DANMBQ010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5371
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.144"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            17..4213
                     /locus_tag="PXE92_002278"
     CDS             17..4213
                     /locus_tag="PXE92_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5761477.1"
                     /translation="MKTKTFTRSYLASFVTIVLSLPAVASVVRNDVDYQYFRDFAENK
                     GPFSVGSMNIDIKDNNGQLVGTMLHNLPMVDFSAMVRGGYSTLIAPQYLVSVAHNTGY
                     KNVQFGAAGYNPDSHHYTYKIVDRNDYEKVQGGLHPDYHTPRLNKLVTEVVPAAVTNA
                     GTSIKPYLNEERFPMFLRAGSGTQALRGKESNKTTGIAGAYEYLTGGTTLQLSKSSPD
                     HWLDYSSNLYQVSYGPLSTYALPGDSGSGSYAYDMNEKRWVLVGVLNFYNGMDNQFNR
                     SAIIRKDFHEKKFAEDIAGTINNTVQNAQFNWTAQGKSSSLSQSNNVQKLNVDLKDSS
                     IANQNTSLPQENHGKTINFNGKDATIVLKQDIDQGAGALNLNANLTIRPETDQTWQGA
                     GIIVGKDKKVNWQVKNPQGDRLSKLGEGTLYVNGRGQNLGDISVGDGIVILNQQADHQ
                     GRKQAFNTVGIVSGRPTVVLGSADQVNPDNIYFGFRGGRLDLNGNSIAFKRIQNSDKH
                     ARIVNHNRDHISTLIIQGQDPLTSNDLIWGKWASNSPADIYEYTNPYQNKRKDYFRLK
                     GNSRVYYPTNATSNDHWEFLSSNREQAIQKILDAKNLRQRYDTFNGFIGEDASNKTNG
                     ILNVVFDTKTEVNTEQDKLKNIYTMSGGFNLNGELTLKGGTLLLSGHPTPHAYDIKNK
                     HDVVRENDWQDSHFTAKNITVNKMAQLYIGRNVNEVNSHFTATDKAKLNLGFINRSTP
                     SCYDSEYTGTTHCEVQAVISDNIFANLATTAIKGNVKLQNHSQLNLGKANLTGSVQAD
                     QTTHITLANHSHWLNNGTSQIGHLTMEKGSILSLNDKFATTEIPVRFNKMIIQGNLKG
                     NGRINYTANLAKGESDHLQVDGIAEGNFVLAVRNSTTEANPKSSLNLLSLKNSNQEGN
                     KASISLENNYVDLGTYRYVLENRNHNYHLFNPLIPNSTSKEMNATSVSSIPKKESVTN
                     VPTLDKKETEQNLTQLQKDFSAHQLENQKAKQSMINAQSELRRLNSQLNVLQKYVNSR
                     RLGYYTQQAVLEQISIIQNKIKQTQTIFNDANATVKLTDQKLEEAKLALGSVNDLVLI
                     KASAPAMQATNQDTSMMNIIQADWISQYANTALSELSAQANSALQISNSLDRQLFKQS
                     DKFNVWSSVEHQKTEHKSDLYRPYKQQTNLTQLGIQMPIDNGLMFGVALSKNHANAEF
                     NEGVNGKSNLLMASLYGKWQSQQGTFISLDGSYGKAKNQLYLFGENHFTRRISSIGAN
                     IGHQFDLAGVQIQPTIGARYYHFSGQDYTLGGAKISSPNTHFMTYQAGLKASKTFSLD
                     DWKVEPSITTHYVDASNKRLAVNVNNNNINQRFGRYLKTEAGIRFEHNQWQFDLHAGF
                     INGNEIKKQHFAGVKLGYSW"
     gene            complement(4268..5362)
                     /gene="mobA"
                     /locus_tag="PXE92_002279"
     CDS             complement(4268..5362)
                     /gene="mobA"
                     /locus_tag="PXE92_002279"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL5761478.1"
                     /translation="MSKTIEERISAVILAGGLARRMNGVEKGLQLFEGKPLISHILAR
                     LSPQVSDIWLNVNRSIEQYQQLYPAFSYYQDSLPDFQGPLSGMLAGFEQIESDYLLFV
                     PCDTPFMPELLLQKLKTALRINNVQIAYAHDGERPHPTFALIHRSVQEDLKAYLGSNQ
                     QQLLAFFQSQKSVAVDFSEQKSAFTNVNTLEDLSRVSQFPVKNLAITGYSGTGKTTLL
                     EKLIPKLTACGIRVGLIKHSHHNVDVDKKGKDSYRLREAGANPTMIVCDERWALMTET
                     KQAVEFSQLIAKFNPQEVDLVFVEGFKHETLPKIQLHRKGIEKPLPELDQWTIATATD
                     YPLERENWLDINNIGGIADFIKNWLENKAS"
BASE COUNT         1824 a         1076 c          974 g         1497 t
ORIGIN      
        1 gataaacttc tcatttatga agaccaaaac atttactcgt tcttatcttg cttcttttgt
       61 aacaatcgta ttaagtttac ctgctgtagc atctgttgta cgtaatgatg tggactatca
      121 atacttccgc gattttgccg aaaataaagg accattttca gttggttcaa tgaatattga
      181 tattaaagac aacaatggac aacttgtagg cacgatgctt cataatttac caatggttga
      241 ttttagtgct atggtaagag gtggatattc tactttaatt gcaccacaat atttagttag
      301 tgttgcacat aatactggat ataaaaatgt tcaatttggt gctgcaggtt ataaccctga
      361 ttcacatcac tatacttata aaattgttga ccgcaatgat tatgaaaagg ttcaaggagg
      421 gttgcaccca gactatcata ctcctcgatt aaataaatta gtaacagaag ttgtgcctgc
      481 cgcagtcacc aatgcaggta catctattaa accctactta aatgaagaac gcttccctat
      541 gtttcttcgt gctggttcag ggacacaagc gctaagagga aaagaaagta ataaaacaac
      601 tggaatcgct ggtgcttatg aatatcttac tggcggtacc acattacaat tatctaaaag
      661 ctcccctgat cactggttag attattcaag taacctttat caagtaagct atggaccact
      721 ttcaacctat gcactacctg gtgatagtgg ttcaggttct tacgcctatg atatgaacga
      781 aaaacgatgg gtattagttg gtgtgctcaa tttctataat ggtatggata atcaattcaa
      841 ccgctctgcg attatccgta aagatttcca cgagaaaaaa tttgccgaag atattgcagg
      901 aacaatcaat aataccgtac aaaatgcaca attcaattgg actgctcaag gtaaatccag
      961 ctctcttagt caatcaaata atgtgcaaaa actcaacgtt gatctaaaag atagtagcat
     1021 tgcaaaccaa aacacttctc tgccacaaga aaatcacggt aaaaccatta attttaatgg
     1081 taaagatgca actattgtac taaaacagga tattgaccaa ggtgcaggtg cattaaatct
     1141 gaacgctaat ctcactattc gtcctgaaac agaccaaact tggcaaggtg caggtattat
     1201 cgtcggtaaa gataaaaaag tgaattggca agtaaaaaat ccacaaggcg atcgtttatc
     1261 taaactcggg gaaggaacac tctatgtaaa tggacgtgga cagaatcttg gcgatatcag
     1321 tgtaggtgat ggtattgtaa tacttaacca gcaagccgat caccaaggaa gaaaacaggc
     1381 ctttaataca gtaggaatcg taagtggtcg ccccactgtt gtgctaggta gtgcagatca
     1441 agttaatccc gataatattt actttggatt tcgcggaggt cgtttagacc taaacggtaa
     1501 cagcatcgcc tttaaacgta ttcaaaacag cgataaacat gctcgtattg taaaccacaa
     1561 tcgcgatcac atttctacct taataataca aggccaagat cctctcacta gtaatgatct
     1621 tatatgggga aaatgggcaa gtaatagccc agcagacatt tacgaatata ccaatcctta
     1681 tcaaaataaa cgcaaagatt acttccgtct gaaaggtaat tcgagagtat attatccaac
     1741 gaatgctaca agtaacgatc actgggaatt tctttccagt aaccgcgagc aagcaataca
     1801 gaaaatccta gatgccaaaa acttaagaca gcgctatgac acgtttaatg gttttatagg
     1861 ggaagatgct tccaataaaa ctaatgggat attaaatgtc gtgtttgata caaaaacaga
     1921 agtaaataca gaacaagata aattaaagaa tatctacaca atgtcgggag gatttaacct
     1981 taatggtgaa ctcaccctta aaggtggtac attgttgctt tctggtcacc caacgccaca
     2041 cgcttatgat attaagaata agcatgatgt tgtgcgtgaa aacgattggc aagacagcca
     2101 ttttactgct aaaaatatca cggtaaataa aatggcacaa ctctatatcg ggagaaatgt
     2161 caatgaagta aatagtcact ttactgcgac tgataaagcc aaactcaatt taggatttat
     2221 taatcgttca acgccaagtt gctatgattc tgaatacaca ggcactacac attgtgaagt
     2281 gcaagcggtc atttccgata atatttttgc aaatctagca acaaccgcca ttaaaggtaa
     2341 tgttaaatta caaaaccata gccaattaaa tttaggcaaa gcaaacctca ctggttctgt
     2401 acaagctgat caaacaactc atatcacttt agcaaatcac agtcactggt taaacaatgg
     2461 tacgagccag attgggcatc ttacaatgga aaaagggtcg atccttagcc taaacgataa
     2521 atttgctacc acggaaatcc cagtccgatt caacaagatg atcatccaag gtaatctaaa
     2581 aggtaatgga cgaattaact ataccgcaaa tttagccaag ggcgaatctg atcatctcca
     2641 agttgacggt attgctgaag gaaattttgt ccttgccgtt agaaatagca caactgaagc
     2701 aaatccaaaa agctcattaa acctactaag cttaaaaaat agcaaccaag aaggcaataa
     2761 agcttctatt tctctagaaa ataattatgt tgatctaggt acttatcgtt atgtattaga
     2821 aaatcgtaat cacaattacc atttatttaa tccattaata ccaaattcaa cctctaaaga
     2881 gatgaatgct acatctgtat cctctattcc aaaaaaggaa tctgttacta atgttcctac
     2941 tttagataag aaagaaactg aacaaaatct tactcaacta caaaaagatt tttcagcaca
     3001 ccaattagaa aatcaaaaag caaaacaatc tatgataaat gctcaatctg agctaagacg
     3061 actcaattca caactgaatg tattgcaaaa atatgtgaat tctcgtcgct taggttacta
     3121 tactcagcag gcagttttag aacaaattag cattattcaa aataaaatta aacaaacaca
     3181 aacaatattt aatgacgcta atgcaactgt aaaactcaca gatcaaaagc tagaagaagc
     3241 caaattagct ctaggctctg taaacgatct tgtattaata aaagcctctg ctccagcaat
     3301 gcaagcaact aatcaagata cgagtatgat gaatattatt caagcagatt ggataagcca
     3361 atacgctaac acagcacttt ctgaactctc ggcacaggct aattctgctc tgcaaatcag
     3421 taatagctta gatcgccaac tcttcaaaca aagcgataaa ttcaacgtat ggagcagcgt
     3481 cgaacatcag aaaaccgagc ataaatcaga tttataccgc ccgtataaac aacaaaccaa
     3541 cctgacccaa ctgggcatac aaatgccgat agataacggt ttaatgtttg gagttgcatt
     3601 atctaaaaac cacgctaacg cggaatttaa cgagggtgta aacggtaaat cgaatctact
     3661 aatggcaagc ctatatggta agtggcaatc tcaacaaggc acttttatca gccttgatgg
     3721 cagctacggt aaagcaaaaa accaactcta cctatttggt gaaaaccact ttacccgccg
     3781 aatttcctct attggtgcta acattggaca tcaatttgac ctcgcaggag ttcaaattca
     3841 gccaacaata ggagcaagat actaccattt cagcggccaa gactatacac taggaggagc
     3901 gaaaatcagc tcaccaaata cccactttat gacatatcaa gcgggtctaa aagctagtaa
     3961 aaccttttca ttggatgact ggaaagttga accaagcatt acaacccact atgtggatgc
     4021 aagtaacaaa cgcttagcag taaacgtcaa taataacaat atcaaccaac gtttcggtcg
     4081 ctatctgaaa accgaagctg gtatccgatt tgaacataac caatggcaat tcgacttaca
     4141 cgctggtttc attaacggca acgaaatcaa aaaacaacat tttgctggtg ttaagctagg
     4201 atatagctgg taagaaaaag cccctagaac tatttctagg ggctttttct actcttaaaa
     4261 agagtatcta acttgcctta ttttctaacc aattcttaat aaaatctgct attcccccaa
     4321 tattattaat atccaaccaa ttttctctct caagcgggta atccgttgcg gtggcaatcg
     4381 tccattggtc tagctctggc aatggttttt caatcccttt gcggtggagc tgaatttttg
     4441 gcaaggtttc gtgtttaaag ccttctacga aaacgagatc aacctcttgc gggttgaatt
     4501 ttgcaattaa ttgagaaaat tcgaccgctt gtttggtttc tgtcattaat gcccaacgtt
     4561 catcgcacac aatcattgtc gggtttgctc ctgcttcacg taggcggtag ctgtctttgc
     4621 cttttttatc tacatcaacg ttatggtggg aatgtttaat cagcccaacc cgaataccgc
     4681 aagcggtcaa ttttgggatt aatttttcca ataaggtggt tttacctgtg ccgctgtagc
     4741 ctgtaattgc aaggtttttt acagggaatt ggcttactcg gcttaaatct tccaatgtat
     4801 tcacgttggt gaatgccgat ttttgttcgg aaaaatcaac tgccacgctt ttttgtgatt
     4861 ggaagaacgc aagcaattgc tgttggtttg agcctaaata ggctttcaaa tcttcttgta
     4921 ccgaacgatg aatcaacgca aaagtgggat gtggacgctc accatcatgg gcatatgcaa
     4981 tttgtacgtt atttatccgc aaagcagttt ttaatttttg caataacagc tcaggcataa
     5041 agggcgtatc gcaaggcaca aaaagcaaat agtcactttc aatttgctca aatcctgcca
     5101 gcattccact gagtggacct tgaaaatcag gcaagctatc ttgatagtaa gaaaaagcag
     5161 gataaagctg ctgatattgc tcaatagaac gattgacatt aagccaaatg tcactaactt
     5221 gtggtgaaag tcgggctaaa atgtgtgaaa taagcggttt tccttcaaaa agttgtaacc
     5281 ctttttctac cccattcatt cgacgagcta aaccgcccgc taaaatcacg gctgaaatgc
     5341 gttcttctat tgttttactc acagctttat c
//
LOCUS       DANMBQ010000144         5335 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.145, whole genome shotgun sequence.
ACCESSION   DANMBQ010000144 DANMBQ010000000
VERSION     DANMBQ010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5335
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.145"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(281..874)
                     /locus_tag="PXE92_002280"
     CDS             complement(281..874)
                     /locus_tag="PXE92_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761479.1"
                     /translation="MHNNLAIFYCGTNGAGKSTLRSFNQDKVEIVIDSDNIAMQINPL
                     NPRLADIEAGRKAIELFQFAVKNQVAFSMESTLSGKSILKRMENAKAGYFKTRLNYIG
                     VDSYKINIARVKARVKAGGHFIDEETIRKRYHISRENLIEAIFINDETLIYDNSETKP
                     NLILQIADKKVIKISDKIPNWCNQLCDELVELGFKTT"
     gene            complement(864..1034)
                     /locus_tag="PXE92_002281"
     CDS             complement(864..1034)
                     /locus_tag="PXE92_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761480.1"
                     /translation="MTSREELLKKQRELDILFTAWFEEKKKHEVLTYRRENGDLIQHY
                     PDGTEKVIEYAQ"
     gene            complement(1036..1778)
                     /locus_tag="PXE92_002282"
                     /pseudo
     CDS             complement(1036..1778)
                     /locus_tag="PXE92_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250915.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
     gene            complement(1775..2218)
                     /locus_tag="PXE92_002283"
     CDS             complement(1775..2218)
                     /locus_tag="PXE92_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5761481.1"
                     /translation="MLKNLSWRAKRFDELSTQELFEIYHARTAVFVVEQNCPYQEVDN
                     KDLQAVHFFTKNAKNLTAYCRLIPANDGVHIGRVLVVKENRGSGLARELVQKAMDYCG
                     EHFPAQPIHAQAQSYLQGFYESFGFKAVSEVYLEDGIAHLDMVLE"
     gene            complement(2212..2649)
                     /locus_tag="PXE92_002284"
     CDS             complement(2212..2649)
                     /locus_tag="PXE92_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HDL5761482.1"
                     /translation="MKQVQFYLLSQADAAELSAAEMQACELAAQAWRLGKRVLIACET
                     EQQALNIDEALWARDPDSFVPHNLSGEITTYPTPIEISWKGKRNAQRRDLLISLQTQL
                     PEFIGSFTQIIDFVPVEETAKAQARDRYKQYRQLGWQLETIQC"
     gene            2888..3331
                     /gene="lysM"
                     /locus_tag="PXE92_002285"
     CDS             2888..3331
                     /gene="lysM"
                     /locus_tag="PXE92_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein LysM"
                     /protein_id="HDL5761483.1"
                     /translation="MGLFDFVGDIGRKLFNKEEDASKAVTEHLAEDNPGVENVNVTVE
                     NGVAKISGIASTAAAVEKAVLMAGNVAGITEVNIDEVTLPDDVQLASDDELYVIQKGD
                     TLWEIATKAYGNGAKYKAIVEANKEVIKDENKIFPGQKIRIPKGL"
     gene            complement(3385..4236)
                     /locus_tag="PXE92_002286"
     CDS             complement(3385..4236)
                     /locus_tag="PXE92_002286"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HDL5761484.1"
                     /translation="MKQYLDLCNRIVSEGKWVANERTGKHCLTVINADLTYDVEKGEF
                     PLVTTRRSYWKAAIAELLGYIRGYSNAADFRQLGTKSWDANANENAQWLANPYRKGED
                     DMGLVYGAVGRNFPKPDGGSVDLLRQIVDDLKKGIDNRGEIYTFYHPGAFHMGCLRPC
                     LHSHHFSLLDGTLYLNSTQRSADVPLGLNWNMIQCYTFLALMAQITGHKAGQAFHKIV
                     NAHIYEDQLELMRDVQLKREPLNAPKLIINPDIKSLEDLETWVSLDDFKVEGYEYHPA
                     IQYPFSV"
     gene            4329..4880
                     /locus_tag="PXE92_002287"
     CDS             4329..4880
                     /locus_tag="PXE92_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761485.1"
                     /translation="MKGIMKSILVFSTAVFLAACSSNKSGWTRLNDNDVDQKSYAIAY
                     GATAQTYADRVNESYDINSFMNGVNDWYTKKVTLPIEQIRAITINRMLDHNVYAYYSG
                     VIYAADLQANFNHLDPNCWGLVQPASMTQGIHDAMLDLQKNKVRGDEYIKNGVEQILH
                     LCVKTIAEDENESQSKGKTKKHK"
     gene            5089..5183
                     /locus_tag="PXE92_002288"
     tRNA            5089..5183
                     /locus_tag="PXE92_002288"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5124..5126,aa:Ser,seq:gct)
     gene            5197..5273
                     /locus_tag="PXE92_002289"
     tRNA            5197..5273
                     /locus_tag="PXE92_002289"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5231..5233,aa:Arg,seq:acg)
BASE COUNT         1562 a         1022 c         1051 g         1700 t
ORIGIN      
        1 aataactttt ttagactttt tcctattctg tttcatcttt gtgtttttgt tccaatatcc
       61 ccgatggtga tcgtcttcga cgagagctta tttatttaag aacctatcag agataggcat
      121 aagcggtctg tttcgagaag ttttttgcaa agtttttctt taatccgaca gcttgtcacc
      181 cacacacaag ccgtgtgggg ttacgcatag ctgagccact ttgtggctct aagttacagc
      241 tccaaaggag ctgggattgt cgagcctagc acggctcgtg ctaggtggtt ttaaacccta
      301 attccactaa ttcatcacaa agctgattac accaattcgg tattttgtct gaaattttta
      361 tcactttctt atcagcaatc tgcaaaatca aattcggctt ggtttctgaa ttatcataaa
      421 tcagtgtttc atcattgata aaaatcgctt caattaaatt ttcacggcta atgtgatagc
      481 gttttctaat ggtttcttca tcaataaaat gtccgccggc tttcactctt gcttttaccc
      541 gtgcgatgtt aattttatag ctatcgacac caatataatt taatcgagtt ttgaaatatc
      601 ctgctttggc attttccatt cgttttagaa tagatttacc cgagagggtt gattccattg
      661 aaaatgcaac ctgatttttt actgcaaact gaaatagttc gattgctttt ctgcccgcct
      721 caatatcggc caatcttgga ttgagtgggt taatctgcat cgcaatatta tcggaatcaa
      781 tcacaatctc gactttatct tgattgaaag aacgtaaagt agatttgccg gctccgtttg
      841 tgccacagta aaaaattgct aggttattgt gcatattcaa tcactttttc cgtaccgtcc
      901 ggataatgct gaattaaatc cccattttct cggcgatacg tcagcacttc gtgctttttc
      961 ttttcttcaa accatgctgt aaagagaata tccagttcac gttgtttttt cagtaattct
     1021 tcacgacttg tcattttatg tcctctgttt cagaatcgcc aaataccttt ccaactcagc
     1081 taattcatac tgactaatca attcaaccaa actactaata tcttgttgat ttttatggaa
     1141 atcatcaaaa cattggtaat attgggctcg attggtaaat ttaatatcaa tcggtaaata
     1201 gccctgtttt aataattcaa aattaatcag taatcgccct gtgagcccgt ttccatcaat
     1261 aaaagggtga atgctttcaa aggctaaatg cagccaactg attgcctcta tgggatgaag
     1321 tgcggtcagt ttttgttgat atttttcaat caataattgc atttcttcgg caattaaata
     1381 aggggggggg cattttctgc ccctaaaatt cgtactggaa ttttgcgata aacccctcgg
     1441 ctttccgcat tgcccattaa taccagagaa tgaatatctt taatcgctcg ttcgcttaat
     1501 ggttctttat tggcgactaa ttcataaata tagttgaatg catccttaaa accgataata
     1561 tctaaatgct cccgaatcgg tttttcggca atggtcattc cctcttttaa aatgagcacc
     1621 gtttcacgca aagtaatggt attgccttca attgcattgg aattatagct gctttcaata
     1681 ataaactctt cccgcagtcg ttgaacttcg ctttcagata atggacggcg ttgtgaaagt
     1741 gctgttttta attgttcgat tttagctaat ttattcattc taacaccata tccaaatgcg
     1801 caatcccatc ttccaaatac acttctgaaa ccgctttaaa cccaaaactt tcataaaacc
     1861 cttgcaggta actttgggct tgggcgtgaa tgggttgagc aggaaaatgt tcgccacaat
     1921 aatccatcgc tttttgtacc aattcccttg ctaagcctga gccacgattt tctttcacca
     1981 ccaacactct acctatatgc acaccatcat tggctggaat taaacggcag taagcggtca
     2041 gattttttgc attttttgta aagaaatgca ccgcttgcag gtctttatta tcgacttctt
     2101 ggtaagggca gttttgctca accacaaaca ccgctgtacg tgcgtggtaa atctcaaaca
     2161 actcttgggt ggagagttca tcaaagcgtt ttgcgcgcca agagaggttt tttagcattg
     2221 tatcgtttcc agttgccaac caagttggcg gtattgttta tagcggtcac gagcctgtgc
     2281 tttggcggtt tcttccaccg gcacgaaatc aataatctgg gtaaaactgc cgataaattc
     2341 ggggagttgg gtttggagtg aaatcaacaa atcccgacgt tgagcattgc gtttaccttt
     2401 ccacgaaatt tcgataggcg ttgggtaagt ggtgatttct cccgataaat tgtgcggcac
     2461 gaacgaatcc ggatctcttg cccaaagtgc ttcgtcaata tttaacgctt gttgctcggt
     2521 ttcgcatgca atcagtaccc gtttacctaa tcgccacgct tgagccgcaa gttcgcaggc
     2581 ttgcatttca gcagcggaaa gctcggctgc atcggcttgg cttaatagat aaaattgtac
     2641 ttgtttcaca gaatgttccc agaaattcaa tcagatattt aaacttaata ttctagctga
     2701 aaatgagtaa aatataaaat ctaagcgttt gtttttgcaa aaaattgaga aaaaatgacc
     2761 acttgtgttg cgttgccttg aggaactaat tagcttttag acgttctaag agaacaatgc
     2821 actatttcaa tagttggaaa ttgtgtagaa tacccacttc atttagctat tttataagga
     2881 acttactatg ggcttatttg attttgttgg cgacattggt cgtaaattat ttaataaaga
     2941 agaagatgct tcaaaagcgg ttacagagca tttggcggaa gacaatccgg gcgttgaaaa
     3001 tgtaaacgta acggttgaaa acggggtagc gaaaatttca ggcattgctt caaccgcagc
     3061 agctgttgag aaagcggtat tgatggcggg taatgtggct ggtatcactg aggtaaatat
     3121 tgatgaagtg accttgcctg atgacgtgca acttgcaagt gatgatgagc tttatgttat
     3181 ccaaaaaggg gatacgttgt gggaaatcgc cacaaaagct tatggtaacg gtgcaaaata
     3241 taaagcgatt gtagaagcaa ataaagaagt tattaaagac gaaaataaaa tcttcccagg
     3301 gcaaaaaatt cgtatcccga aaggtttata atcaaattga aagagctaag ctggtcgaaa
     3361 gtttagctct ttttgtaggt ggtgttagac tgaaaatgga tattgaatgg cagggtggta
     3421 ttcataacct tcaactttga aatcatctaa gctcacccaa gtttctaaat cttctaagga
     3481 ttttatatca ggattaatga ttaatttagg tgcattgagt ggttctcgct taagttgaac
     3541 atcacgcatt aattctagtt gatcttcata aatatgcgca ttgacaattt tatggaacgc
     3601 ttgtcctgcc ttatgccctg taatttgagc cattaaagct aaaaaggtat agcattgaat
     3661 catattccaa tttaacccaa gcggtacatc tgccgaacgc tgagtactat tcaggtaaag
     3721 cgtgccatca agtagagaaa aatgatggct gtgtaaacaa ggacgtaagc agcccatatg
     3781 gaaagcgccg gggtggtaga aggtataaat ttcaccacgg ttatcaattc cttttttcaa
     3841 atcgtccaca atttgtcgca ataaatcgac tgagccaccg tctggtttcg ggaaattacg
     3901 ccctactgcg ccgtaaacca agcccatatc atcttcccct tttcgatagg gattagcaag
     3961 ccattgtgca ttttcatttg cattagcgtc ccacgatttt gtgcctaatt gacggaaatc
     4021 agcagcatta ctatagcctc gaatatagcc taaaagttcg gcaatcgcag ctttccaata
     4081 actacggcga gtggtaacta aaggaaattc tcctttttct acgtcataag ttaagtcagc
     4141 attaatgact gtgaggcagt gtttgcctgt acgttcattt gcaacccatt tgccttcgct
     4201 aacgatgcgg ttacataagt ctaaatactg tttcattatt tacctcataa aaaattttag
     4261 gtaattttgc catttattcg gtaaaatagc taaaacttta tgacacaaca caataaggag
     4321 ttatggatat gaaaggtata atgaaatcca ttctggtttt ttccaccgct gtttttttag
     4381 cagcttgttc atcgaataaa agcggttgga cacgtttaaa tgataatgat gttgatcaga
     4441 aatcttatgc tattgcttat ggtgcaacgg ctcagactta tgcggataga gtaaatgaaa
     4501 gctatgatat caattccttt atgaatgggg taaatgattg gtacactaaa aaggttacat
     4561 tgccaattga gcaaattaga gcaataacga ttaatcgaat gttagaccat aatgtgtatg
     4621 cttattatag tggtgtgatt tatgccgcag atttgcaggc aaatttcaat catttagatc
     4681 ctaattgttg ggggcttgtt caaccagcga gtatgaccca gggcattcac gatgcgatgt
     4741 tagatttaca gaagaacaaa gttcgtggag atgagtatat caaaaatggg gttgagcaaa
     4801 tattgcacct ttgtgtaaaa acgattgctg aagatgaaaa tgaatcgcaa tctaaaggta
     4861 aaaccaaaaa gcataaataa gttaagctat gacaagcggt aaaattttta aaaaatttta
     4921 ccgctttttt ataaccgtat gaaatgttta atatttattc tatgaaactt aaaaaaacag
     4981 cgttttgttt attcaatagg caaacactcg ggatttttca attttcagga aaaagaattt
     5041 gacatctttt taaattctag taatatggcg cccacagaca cagtgagtgg tgagatggcc
     5101 gagcaggctg aaggcgctcc cctgctaagg gagtataggg ttaaaaagct ctatcgaggg
     5161 ttcgaatccc tctctcaccg ccatttactt tatcacgcac ccgtagctca gctggataga
     5221 gtactcggct acgaaccgag cggtcagagg ttcgaatcct ctcgggtgcg ccattttaat
     5281 ttttactcta ttcaaattaa aatggttgct gataaaatta aataaactta caatt
//
LOCUS       DANMBQ010000145         5292 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.146, whole genome shotgun sequence.
ACCESSION   DANMBQ010000145 DANMBQ010000000
VERSION     DANMBQ010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5292
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.146"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            3..1109
                     /gene="rnd"
                     /locus_tag="PXE92_002290"
     CDS             3..1109
                     /gene="rnd"
                     /locus_tag="PXE92_002290"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005556401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HDL5761486.1"
                     /translation="MHYQWVETNEQLEAVCEQARKTKVVALDTEFIRTRTYYPILGLI
                     QLFDGQQVSLIDPNTISDFSPFVSLLADKNIIKVLHACSEDLEVFEYQFKQLPEPMLD
                     TQVMAAFAGIGISMGFAKLVSHYLNIELDKGASRTDWLARPLSAEQLQYAAADVWYLL
                     PVYEKLAQALTKSTWQSAVAEECVALLKKAKQPINKEKAYKNIANAWRLNREELAILQ
                     VLAKWRIEEAQKRNLALNFVVKEASLVQIAKSCPKHTSSLLEFMHPNEVRIHGKKILW
                     LVEQGKAIESNDYPELIQRLVDEKGYKYYMQAMLQKLLEIQPLDIVPELVASKRQLNQ
                     LFKWYIDGKPSEKIPELLIGWRKPFGEQLLSVLS"
     gene            1166..1648
                     /gene="lrp"
                     /locus_tag="PXE92_002291"
     CDS             1166..1648
                     /gene="lrp"
                     /locus_tag="PXE92_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005695827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HDL5761487.1"
                     /translation="MENKKPPKALDAIDLKILNELQRNGKISNIELSKRVGLSPTPCL
                     ERVKRLEKNNVIMGYKALLNPELLDAPLLVIVEITLVRGKPDVFEEFNKAIQQLDEIQ
                     ECHLVSGDFDYLLKTRVADMVSYRKLLGTTLLRLPGVNDTRTYVVMEEVKQTNYLLLK
                     "
     gene            1659..4319
                     /locus_tag="PXE92_002292"
     CDS             1659..4319
                     /locus_tag="PXE92_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HDL5761488.1"
                     /translation="MIEQLKPHLKGKENLIKLMLLLTGFLGVYLLIAWASYSPLDNAW
                     SVASSITQTTLNKTGHFGAWSIDMLYAMFGKVAVLVPIALIIFSIYSLGMGLSVDMKW
                     KTVFIRLASFLLLMVGLAGLFSVLFSNSAYYLSGGFVGGVWETILSDTIGQFGALLIA
                     MLFTIAGLYFCSVQSLLPILTQFYEWIMAKSEESKTAESLQHLQNTEQKQPLVTENEA
                     VEVVDDHKPQFTDISAFKRPNISGLRHSENVEIDNREMYEIERDLELPTINILIQPDM
                     VNQVAEQATSGYELPNEESNVLQMPTIRLNTAIENEVDTIENSSSLEDLKIAESMLPQ
                     IQLDNDIEDTEEAIDDVREITPEFMVTPPKAMKDVSEQPAYPKGYGDTLIHPLLQRKV
                     ITEKPTTPLPTLDLLDKAPIQSQQITEQEIRETSVRLEAELANFGVKATVEDVLVGPV
                     VTRYEIQPAAGVKASKITNLASDIARGLMFKAIRITEVIPNKPYMGIETPNKHRETVW
                     LRDVLDSDEFRNTTATLPMALGKDISGEPVVVDMAKMPHLLVAGQTGGGKSVGVNTMI
                     LSLLFKLTPEQVRFIMIDPKVVELSIYNDIPHLLTPVVTDMKKAANALRWAVEEMERR
                     YLLVSHLQVRNIEGYNAKIDQAAAMNLPIPDPTWRPGDSMDSLPPPLQKLSYIVLIVD
                     EFADLMMSAGKEVEEYIMRIAQKARAVGIHLILATQRPSTDVITGVIKANIPSRIAFT
                     VASQIDSRTILDSGGAEALLGRGDMLYSGAGSPDIIRIHGAFMKDEEVQRVADNWRAR
                     GKPNYLESIVESRSEEADGKNDGGTGDLDPLFDEVVEYITETGSVSISNIQRRFSLGF
                     NRAARIVDQMEAQGIVSEPLKGGKREVLAR"
     gene            4471..>5292
                     /locus_tag="PXE92_002293"
     CDS             4471..>5292
                     /locus_tag="PXE92_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HDL5761489.1"
                     /translation="MRLDDIKESKNVEDRRFNNVGRTKVGRGKGGILTFIIVLVGAYY
                     GVDLTGLMGGGVEYEEQTSALNESEEKQLRTLSAKVLTTTENIWTSYFQQNGLTYKEP
                     SLVLYRGAIQTACGTGQSAMGPFYCPVDQKVYLDLSFYDDMRKKLRASGDFAFSYVIA
                     HEVGHHVQNLLGITSKTQRAQMKASSKAEANQISVNVELQADCFAGVWGHQLAKANRL
                     EEGDVEEAFNAAQAVGDDRLQQQSRGYVVPDSFTHGSSAQRLAWFRKGLTTGNPAV"
BASE COUNT         1664 a          960 c         1203 g         1465 t
ORIGIN      
        1 tgattcacta ccaatgggtt gaaacaaatg agcaattaga ggccgtatgt gaacaggcca
       61 gaaaaacaaa agtagttgcc ttagatacag agtttatccg tacacgtacc tattatccga
      121 tattgggttt aattcaactc tttgatggcc aacaggttag ccttattgat ccaaatacga
      181 tttctgactt ctcgcctttt gtgtcattat tagccgataa aaatatcata aaagtattac
      241 atgcctgtag tgaggattta gaagtttttg agtatcaatt taagcaattg ccagagccga
      301 tgttggatac tcaggtgatg gcagcctttg ccggcattgg tatttcgatg gggtttgcaa
      361 aattggtttc ccactactta aatattgaac tagacaaagg cgcttcccga accgattggc
      421 ttgccagacc gctaagcgct gaacaattac aatatgcggc agctgatgtt tggtatttat
      481 tgccagttta tgagaaattg gcacaagcat taacaaaaag cacttggcaa agtgctgtag
      541 cagaggagtg tgtcgctttg ttgaagaaag cgaaacagcc tatcaataag gaaaaagcct
      601 ataaaaatat tgccaatgct tggcgattga atcgggaaga gttagccata ttacaagtat
      661 tagcgaaatg gcggattgaa gaagcacaaa agcgcaatct tgccttaaat tttgtcgtga
      721 aggaggcaag tttagttcaa atcgcaaaaa gctgtcctaa acacacttct tcgctgttag
      781 aatttatgca cccaaatgaa gtcagaattc acggaaaaaa aatactatgg ttggttgagc
      841 aaggaaaagc aatagaatcg aatgattatc ctgaactcat tcagcgcttg gtggatgaaa
      901 agggttataa atattatatg caagcgatgt tgcaaaaatt attagaaatt caaccgcttg
      961 atatcgtacc ggagttggtt gcaagtaaac gtcaattaaa tcagctattt aaatggtata
     1021 ttgatggaaa accatcagaa aaaattcctg aattattaat cggttggcga aaaccttttg
     1081 gtgaacagct gctatcggtt ttatcttaaa tttcattcgg gttacataga ctatgtacag
     1141 tataattgcc taaaaaggag tttatatgga aaataaaaaa ccaccaaaag cattagatgc
     1201 gattgattta aaaatcttaa acgagctaca acgtaacggg aaaatttcta atattgaatt
     1261 atcaaagcga gttgggcttt ctccaacgcc ctgcttagaa cgggtaaaac ggctagaaaa
     1321 aaataacgta attatgggct ataaagcttt acttaaccct gaattacttg atgccccttt
     1381 actggtgatt gttgaaatta ctttggtgcg tggtaagcct gatgtatttg aagaatttaa
     1441 taaagcgatt caacaacttg atgaaattca agaatgccac ctggtatcgg gggattttga
     1501 ttatctgtta aaaacccgtg tggcggatat ggtatcgtac cgtaagttat taggcacaac
     1561 attgcttcgt ttgcccggcg taaatgacac tcgaacctat gtggtgatgg aagaagtaaa
     1621 acaaaccaac tatttgttgt taaagtaagg agaattgggt gattgaacaa cttaaaccac
     1681 acctaaaagg caaagagaac ttgatcaaac ttatgctttt gttgaccggc tttttgggcg
     1741 tttatttgct aattgcttgg gcaagttata gtccattaga taatgcttgg tctgttgcaa
     1801 gcagcattac acaaacaacc ttgaataaaa caggtcactt tggtgcttgg agtattgata
     1861 tgctctatgc aatgtttggt aaggttgcag ttttagtacc tattgcatta attattttct
     1921 caatttatag cttgggaatg ggtttaagtg tcgatatgaa atggaaaact gtcttcattc
     1981 gcctagccag tttcttatta ttgatggtcg gtcttgccgg gttatttagc gtgctttttt
     2041 caaactcagc ttattatctg tcgggtggct ttgtcggtgg agtttgggag acaatattat
     2101 ctgatactat cggacaattt ggtgccttat tgattgcaat gctttttact atagctggct
     2161 tatatttttg ctctgttcaa tcattattgc caatattaac gcaattttat gagtggataa
     2221 tggcaaaatc agaagagagc aaaacagctg aatctcttca gcatttgcaa aatactgagc
     2281 aaaaacaacc gcttgtaact gaaaatgaag cggtggaagt tgtagatgac cataaaccgc
     2341 aatttaccga tatctccgcc tttaaacgcc caaacattag tggtttaaga cactcggaaa
     2401 atgtagagat agataaccga gaaatgtatg aaattgaaag agatcttgag ctaccgacta
     2461 ttaatatttt aatacagcct gatatggtta accaagttgc ggaacaagct acatcgggct
     2521 atgagttacc aaacgaagaa tccaatgtat tgcaaatgcc gaccattcgc ttaaataccg
     2581 ctatcgaaaa cgaggtggat acaatcgaaa acagttcatc attggaagac ctgaaaatag
     2641 cagaatctat gttacctcaa attcagcttg ataatgatat tgaagatact gaagaagcta
     2701 ttgacgatgt gcgtgaaatt acaccggaat ttatggtaac gccgcccaag gcgatgaaag
     2761 atgtgtctga gcagccagcc tatccaaaag gctatggtga tacgttaatt cacccgttgt
     2821 tacaacgaaa agtgataacc gaaaaaccga caacaccatt gccaacgcta gatttgttgg
     2881 ataaagcacc gattcaaagc cagcaaatta ccgaacagga aatacgagaa acctctgtgc
     2941 ggctagaagc agaattagca aactttggcg taaaagctac cgttgaagat gtattggtcg
     3001 gtccggtagt gacccgttat gaaatccaac cggctgccgg ggtaaaagcc tccaaaatta
     3061 ccaatttagc gagcgatata gctcgtggct taatgtttaa agcgattagg attactgaag
     3121 ttatcccaaa caaaccttat atgggtattg aaactccgaa taaacaccgt gaaacagtgt
     3181 ggttgcgtga tgtgctagac agcgatgaat tccgcaatac cactgcaaca ttgccaatgg
     3241 cactaggtaa agacatcagt ggtgagcctg tggtggtcga tatggcgaaa atgccacact
     3301 tactggtggc agggcagacc ggtgggggta aatcggttgg ggtgaatacg atgattttaa
     3361 gtctattgtt caaacttaca ccagaacaag tccgctttat tatgattgac cctaaagtgg
     3421 tggagctttc catttataac gatattcctc acttattaac gccggtagta accgatatga
     3481 aaaaagccgc caacgcacta cgctgggcgg tggaggaaat ggaacgccgt tatttgctgg
     3541 taagccattt acaggtgcgt aatattgaag gctataatgc gaaaatcgac caagcggcag
     3601 cgatgaattt gccgattcca gatccaacgt ggcgaccggg cgattcaatg gatagccttc
     3661 cgcctccgct acaaaaatta agctatattg tgctgattgt cgatgagttt gcggatttaa
     3721 tgatgtctgc cggtaaagaa gtggaagagt acattatgcg aattgctcaa aaagcccgag
     3781 cggtgggaat tcacttaatt cttgctaccc aacgtccgtc aaccgatgtg attaccggcg
     3841 tgattaaagc caatattcca agccggattg cgtttacagt agcgagccaa attgactcaa
     3901 gaactatttt agattcaggt ggagcagagg cattattagg gcgaggcgat atgctctatt
     3961 caggagctgg cagcccggat attattcgga tacacggtgc gtttatgaaa gacgaagaag
     4021 tgcaacgcgt ggcggataat tggcgggcaa gaggaaaacc aaactacttg gaaagcattg
     4081 tggaatcccg ctcggaagag gctgatggca aaaacgatgg cggaacgggc gatttagatc
     4141 cgctatttga cgaggttgtt gaatatatca cggaaaccgg ttcggtctct atcagtaata
     4201 ttcaacgccg cttctcgctt ggttttaacc gtgcggctag aattgtggat caaatggaag
     4261 ctcaaggcat tgtttctgag ccacttaaag gtggcaaacg agaagtgctg gcgaggtaaa
     4321 acacatacaa gcggttagat ttctgtgaaa ttttgcaaat tttgacaaaa atctaaccga
     4381 ttgtatttat ctaatgctaa ataagcatag tataaggcta gtctttgggc taaaattaac
     4441 gcaattttta catcttttaa ggttgaatat atgcgattag atgatattaa agaaagtaaa
     4501 aatgttgaag acagaagatt caacaatgtg ggtagaacta aggttggtag agggaaaggt
     4561 ggaatattaa cctttattat cgtgcttgtt ggagcttatt atggtgttga cttaacaggt
     4621 ttaatgggcg gtggcgtaga atatgaggag cagacatcag cattaaatga aagtgaagaa
     4681 aaacagctaa gaaccttatc cgctaaagta ttaacgacca cagaaaatat ttggacttcc
     4741 tacttccagc aaaatggtct aacttataaa gagccgtctt tggtgcttta ccgtggggca
     4801 attcaaactg cctgtggcac cggtcaatct gcaatgggtc ctttctattg ccctgtcgat
     4861 caaaaggttt atttagattt atcattctat gatgatatgc gtaaaaaatt aagagcatcg
     4921 ggcgattttg ccttctctta cgtgattgca cacgaggttg gccaccacgt ccaaaattta
     4981 ttgggcataa caagcaaaac ccaacgggct caaatgaaag cctcatctaa agccgaagca
     5041 aaccaaattt cagtcaatgt agaattgcaa gctgactgtt ttgccggcgt ttggggacac
     5101 caactcgcaa aagccaaccg attagaggaa ggcgatgtgg aagaagcctt taatgctgcc
     5161 caagcagttg gagatgaccg attacagcaa caaagtcgtg gctatgtcgt gccggatagc
     5221 ttcacccacg gctcatctgc acagcgtttg gcttggttta gaaaaggttt aaccacagga
     5281 aatcctgcag tt
//
LOCUS       DANMBQ010000146         5252 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.147, whole genome shotgun sequence.
ACCESSION   DANMBQ010000146 DANMBQ010000000
VERSION     DANMBQ010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5252
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.147"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            9..1193
                     /locus_tag="PXE92_002294"
     CDS             9..1193
                     /locus_tag="PXE92_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HDL5761490.1"
                     /translation="MKQKKLNTTLLFITLSLISACSSLPTSGPSYSEILASNENTAET
                     QLPEVNLIKLDNITVQNLYQEQQSQRFSGFDGSMGVGGYAGTVNVGDILEISIWEAPP
                     AVLFGGTFSAEGQGNGHLTQLPQQMVNKNGTVTVPFIGNIKVAGKTPEVIQNQIVGAL
                     SRKANQPQALVRIANNLSSDVTVIRQGNSIRMPLSANNERILDAVAAVGGTSENIEDV
                     TVRLTRGNKVRSMAFETLIADPSQNITLRSGDVIALMNTPYSFTGLGAVGNNQQMRFS
                     SKGITLAEAIGKMGGLIDERSDPRGVFVFRHIPFTQLDYDNQAQWREKGYAEGMDVPT
                     VYQVNLLKPQSMFLLQRFPIQDKDIVYVSNAPLSEFQKFLRMIFSITTPITGTANTIR
                     AY"
     gene            1265..2368
                     /locus_tag="PXE92_002295"
     CDS             1265..2368
                     /locus_tag="PXE92_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL5761491.1"
                     /translation="MSKKKKHFLANPLLWLTVIIPTACSGIYYSLFASDIYVSESSFV
                     VRSPNNQSSLTGVGALLQNSGFARSQDDTYSVQEYMRSRTALEQLEAEIPVKRFYSEQ
                     GDLLSKFNGLGFNDTQEAFYRYFKERLNIDVDSISGIATLRVRAFNAEEGQKINENLL
                     QQGETLINRLNERARQDTVEFAEERVKEAEKDVNNTALALSQYRTKNKIYDLPAQSSV
                     QLSLISTLKSELIRVETQLAQLKSITPDNPQVAALQMRQKSLKKEIDDQSKQLAGGNT
                     SVATQTAEYQRLVLANELAQQQLAAAMTSLQNTRGEADRQQLYLEVIGRPSKPDWALE
                     PYRIYNIISTFFIGLILFGVLSLLLASIREHKN"
     gene            2368..3165
                     /locus_tag="PXE92_002296"
     CDS             2368..3165
                     /locus_tag="PXE92_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_157140410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5761492.1"
                     /translation="MRYGDNTTFKRSCVIQKRVIHALLMRELITRYGRKNIGFLWLFI
                     EPLLLTLVITVAWKYIKADKFSTLNIIAFMITGYPIAMMWRNASNRAQGAISANLSLL
                     YHRNVRVLDTIFTRVLLEVTGASIAQILLMTIFIAIGWIEMPNDIFYMLCAWILMAFF
                     ALGLGLIICTLAHYIEPFGKIWGTFSFFLLPLSGAFFFVHNLPLTAQNIALWFPMIHG
                     TEMFRHGYFGETVITYESISYLIVSDIILLFIGLLCVRSFSKGIEPR"
     gene            3162..3809
                     /locus_tag="PXE92_002297"
     CDS             3162..3809
                     /locus_tag="PXE92_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5761493.1"
                     /translation="MISIRNVSKQYRTNNGWKTILKDINFELKKGEKVGILGRNGAGK
                     STLIRLMSGVEPPTTGTIERQMSISWPLAFSGAFQGSLTGMDNLRFVSRIYDADFDYV
                     KSFTEEFSELGEYLYEPVKSYSSGMKARLAFALSLSIEFDCYLIDEVIAVGDARFAAK
                     CKHELFEKRKDRSLILVSHSPASIKEYCDSAMVLEEGIMHTFDSIDNAYNFYNKT"
     gene            complement(3887..4516)
                     /locus_tag="PXE92_002298"
     CDS             complement(3887..4516)
                     /locus_tag="PXE92_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HDL5761494.1"
                     /translation="MDFSKILSQVLDTAKDAATNGLIKGNSKNDQIAKIGGGAVAIGL
                     ISMLFGRNGGSSLAKLGSLAAIGSLAYQAYQKYQAQNSSVSELSQNNFENVDENVASK
                     VILQAMIAAAASDGAITEEEKAAIVSQVGDEAEVIEWIRQEMDTPATVEEIARQVGND
                     QALATQVYLASRAVCRDLERKEIVFLANLADALGLAEALVEQLEKDAGF"
     gene            complement(4588..5061)
                     /locus_tag="PXE92_002299"
     CDS             complement(4588..5061)
                     /locus_tag="PXE92_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HDL5761495.1"
                     /translation="MLEKITACPCQTGKRYAECCQPFHLKQTFASTAEQLMRSRYSAY
                     TLVNIPYIVETTVPSQQKLLDQTAMKEWAENTKWVGLSVLNHLPSLSRIHSQVEFKAF
                     FDTDEGIQGHHETSLFVQIDERWFFVDPTVPLPHQKQPCVCGSGKKFKHCCGNYL"
BASE COUNT         1674 a          929 c          983 g         1666 t
ORIGIN      
        1 gtactataat gaaacaaaaa aaattaaata ctacattatt atttataaca ttatcattaa
       61 tttcagcctg ctctagccta ccaacgtccg gcccaagcta tagcgaaatc ttagcaagta
      121 atgaaaatac agctgaaacg cagttgcctg aagtcaattt aatcaagtta gataacatca
      181 ccgtacaaaa cttataccaa gagcaacaat ctcaacgttt ttcaggattt gatggctcaa
      241 tgggtgtggg tggttatgct ggaacagtta atgtaggcga tatattagaa atatccattt
      301 gggaagcgcc acctgccgtg ctatttggtg gaacatttag tgctgaaggg caaggtaatg
      361 ggcatttaac ccaattacct cagcaaatgg tgaacaaaaa tggaacggta actgtgcctt
      421 ttatcggtaa tattaaagtt gctggaaaaa cacctgaagt aattcagaat caaattgtcg
      481 gagcattgag ccgtaaagct aatcaacctc aagcattagt tcgtattgcg aataacttgt
      541 cgtctgatgt tacggttatc cgccaaggaa atagcattcg tatgccatta agtgccaata
      601 atgagcgtat tttagatgca gttgcggcag taggtggtac aagcgaaaat attgaagatg
      661 taacagttcg tttaacacgt ggaaataaag tgcgttcaat ggcgtttgaa acattaattg
      721 ctgacccctc acaaaatatt acattacgtt caggtgatgt tattgcttta atgaatactc
      781 cttatagctt taccggatta ggagcagtag gtaataatca acaaatgcgt ttttcaagta
      841 aaggcattac ccttgctgaa gctatcggta aaatgggagg attaattgat gagcgttcag
      901 accctcgtgg tgtgttcgta ttccgccata ttccttttac acaattagat tacgataacc
      961 aagctcaatg gcgtgaaaaa ggttatgcag agggaatgga cgttccaact gtttatcagg
     1021 tgaatttatt aaaaccgcaa tcaatgtttt tattgcagcg tttccctatt caagataaag
     1081 atattgtata tgtgtcgaat gctccactgt ctgaatttca aaaattcttg agaatgattt
     1141 tctccattac tacaccaatt acaggtacag ctaatacaat tagagcgtac taattagctc
     1201 atagataaaa tggtaaaaaa tcattaaaaa atgaccgctt gtaacacttt tcgttgagga
     1261 ttttatgtca aagaagaaaa aacatttttt agccaaccct ttgttgtggc taactgtaat
     1321 tattccaact gcttgttctg gaatttatta ttccttattt gcctctgata tttatgtttc
     1381 agaatctagc tttgtggttc gttcgcccaa taatcaatcg agcttaacag gcgttggtgc
     1441 tttattgcaa aactccggtt tcgcccgttc tcaagatgat acctattcag ttcaggaata
     1501 tatgcgttcc cgtaccgcat tagaacaact tgaagcagaa attccggtaa agcgttttta
     1561 tagtgagcaa ggtgatttac taagcaaatt taacggttta ggatttaacg atacccaaga
     1621 agcattttat cgttatttta aagaacgtct gaatattgat gtcgattcta tttcaggtat
     1681 tgcaacgcta cgcgttcgtg cttttaatgc agaagaagga caaaaaatta acgagaattt
     1741 attacagcaa ggggaaacat taattaaccg ccttaatgaa agagcaagac aagatacggt
     1801 tgagtttgca gaagagcgtg taaaagaggc cgaaaaagac gtcaataata ctgcgttagc
     1861 attaagccaa tatcgaacta aaaataaaat ttatgattta ccggcacaat ccagcgttca
     1921 gctctcatta atttctacct taaaaagtga attaattcgg gtagaaacac aattagcaca
     1981 attgaagtca attacgccgg ataatcctca ggtagccgca ttacaaatgc gtcaaaaaag
     2041 tttgaaaaaa gaaattgatg atcagtccaa acaacttgca ggaggtaata cttctgtagc
     2101 aacgcaaact gctgaatatc aacgtttggt tcttgctaac gaattagctc agcaacaact
     2161 tgcagcagca atgacttcat tacaaaatac acgaggtgaa gctgatcgcc aacaacttta
     2221 tttagaggta attggtaggc caagcaaacc agattgggca ttagaaccct acagaattta
     2281 taatattata tcaacttttt ttatcggctt aattctattt ggagtattaa gtttgttact
     2341 agcaagtatt agagagcata aaaactaatg cgatatggtg ataatacaac ctttaaacgt
     2401 tcctgtgtga ttcaaaaacg ggtgattcac gcccttttaa tgagggaatt aattactcgt
     2461 tatgggcgta aaaatattgg cttcttatgg ctttttatcg aaccattatt gttaacgtta
     2521 gtgattactg ttgcttggaa atatataaaa gcagataagt tttcaacttt aaatattatc
     2581 gcttttatga ttacaggcta ccctatcgca atgatgtgga gaaatgcctc taatagagct
     2641 caaggagcaa tatcagcaaa cttaagtttg ctttaccaca gaaatgtgag agtgctagat
     2701 acgatattta ctcgagtttt attagaagtt actggcgcat ctatcgccca aattctctta
     2761 atgactatat ttatcgctat tggttggata gaaatgccta acgatatttt ctatatgctc
     2821 tgtgcttgga tattaatggc attttttgcc ttaggtttag gtttaattat ctgtacttta
     2881 gcacattata ttgaaccttt tggtaagatt tggggaacat tcagcttctt tctacttcct
     2941 ctttctggtg cattcttctt tgtccataat ttaccgctaa ctgctcaaaa tattgcctta
     3001 tggtttccaa tgattcatgg tacagaaatg tttagacatg gttattttgg tgaaacggta
     3061 attacctatg agagcattag ttatcttata gtaagtgata ttattcttct atttatagga
     3121 ctgctttgtg tgagaagttt tagtaaaggg atagaaccaa gatgattagt attagaaatg
     3181 taagtaagca atatcgaact aataacggtt ggaaaaccat attaaaagat ataaattttg
     3241 agctgaaaaa aggcgaaaaa gtggggattt tagggcgcaa tggtgcagga aaatcaacct
     3301 taatccgttt aatgagcgga gtagaacctc caacaacagg tacgattgaa cgtcaaatgt
     3361 cgatttcttg gccactggca tttagtggtg cattccaggg tagtttgacc ggaatggata
     3421 atcttcgttt cgtcagccga atttatgatg ctgattttga ctatgtaaaa tctttcaccg
     3481 aagaattttc agaactcggt gaatatttat atgaaccggt aaaaagctat tcttctggta
     3541 tgaaggcccg tttagccttt gcattatcgc tttctattga atttgattgt tacttaattg
     3601 atgaagtgat tgcagtaggc gatgctcgat tcgctgccaa atgtaagcac gagctttttg
     3661 aaaaacggaa agaccgttca ttgattttag tttctcatag cccagcctca attaaagaat
     3721 attgcgattc tgcaatggtt ttagaagagg gtatcatgca tacttttgat tctatagata
     3781 acgcttataa tttctacaat aaaacataaa agaacaagcg gttatatttc acaagttttt
     3841 cgcaaaaaac tctcaaaata taaccgcttg ttactaaaac tgaaaattag aaacctgcgt
     3901 ctttttctaa ttgttcaact aatgcctcag ctaaacctaa agcatcagct aaattagcta
     3961 agaaaacgat ttctttgcgt tctaaatctc tgcatactgc acgggaagct aagtaaactt
     4021 gtgtagccaa tgcttggtca ttacctactt ggcgggcaat ctcttcaact gtagccggag
     4081 tgtccatttc ttgacgaatc cactcaatga cttcagcctc atctccaact tgggaaacaa
     4141 tagctgcttt ttcctcttca gtaatagcac catctgaagc agcagcggca atcattgctt
     4201 gtaaaatcac tttacttgcc acattttcat ctacattttc aaaattattt tggctaagtt
     4261 ctgaaaccga tgaattttgc gcttgatact tttggtatgc ttgataagca aggctaccga
     4321 tagcggctaa agagcctaat tttgctaaac ttgaaccgcc attacgccca aataacattg
     4381 aaattaaacc aatagcgaca gcgccgccac caattttagc gatttgatcg tttttagaat
     4441 tacctttaat taatccgttt gtagcggcat cttttgctgt atctaatact tgacttaaaa
     4501 tcttactgaa atccattttt gttcctcttg gtaagtaaat gaaatttact cattagtcct
     4561 tagattcaaa caagagttca attcaaatta aagataattt ccacaacagt gcttaaactt
     4621 ctttccggag ccacatacac aaggttgttt ttgatgaggc aaaggtacgg taggatccac
     4681 aaaaaaccat cgctcatcaa tttgaacaaa aagagaggtt tcgtggtgtc cctgtatccc
     4741 ctcatctgta tcaaaaaagg ctttaaattc aacctgacta tgtattctcg aaagagaagg
     4801 taagtgattt agcacggata atcctaccca ttttgtattt tcagcccact ctttcattgc
     4861 agtctgatca agtaatttct gctgacttgg cactgtcgtt tccacaatat agggaatatt
     4921 aaccaaagta taagcactgt aacgggagcg cattaattgc tctgccgttg atgcaaatgt
     4981 ctgttttaaa tggaaaggtt ggcaacattc agcgtagcgt ttgcctgttt ggcaaggaca
     5041 agcggtgatt ttttctaaca tttttacatt tccgcataaa aataaagatg tgaaaagttt
     5101 acgctataaa taaagaaaaa taaattttat aaaaaagcgt gacatacccc ttgtggataa
     5161 cttatgcaaa aatcgtgaat tttttgggta ttcattgctt taaaaagcct ttattctata
     5221 gattgtggat aacttaagat tttatccaca gg
//
LOCUS       DANMBQ010000147         5250 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.148, whole genome shotgun sequence.
ACCESSION   DANMBQ010000147 DANMBQ010000000
VERSION     DANMBQ010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5250)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5250)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5250
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.148"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            77..223
                     /locus_tag="PXE92_002300"
     CDS             77..223
                     /locus_tag="PXE92_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761496.1"
                     /translation="MLAEKPKKRWRFWYAFVNGLFFDKKHCYAAYKAEVYRKQYPPEF
                     TEIT"
     gene            330..1511
                     /locus_tag="PXE92_002301"
     CDS             330..1511
                     /locus_tag="PXE92_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HDL5761497.1"
                     /translation="MSILDTYLHGVEVVEVNAGGVTISTAATSVIGVVCTGDQADAET
                     FPLNTPVLITNPLNYLEKAGSTGTLRRTLNSIGSIVKTPTVIVRVAESDDSDTLTANI
                     VGTQENGKFTGIKALLTAQSTVFVKPKLLCVPQHDNQAVATELLSVAKKLNAFAFISD
                     NGATTKEQAYTYRQNFSQREGMMIFGDWKSYNTDKKAYDTDYAVARACALQAYIDKTV
                     GWHKNISNVELDGVTGITKAVEFDINESSTEANYLNEKGITICLNHNGFRYWGSRTLA
                     TDTRWAFQQSVRTAQIIKETIGAGLAWAVDMPLTPLRVKTMLEAINNKLRSWASGDDP
                     RILGARVWVAEEITADIIKSGKFVIKYDYHWIPSLESLGLEQRVNDEYVVDLVNTLKA
                     L"
     gene            1520..2026
                     /locus_tag="PXE92_002302"
     CDS             1520..2026
                     /locus_tag="PXE92_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL5761498.1"
                     /translation="MGLPAKLKNFNFSVDGTSYLGETTEVTQPKLAMQLEDYRAGGMI
                     APVGVNMGLEKLELEFKIGGHEEDLLKLFGGSISGNAFRFNGAYQHDDDDSVDAVELV
                     CRGRIAEIDEGSSKAGDDTEHSYKASLTYYKKTVNGVDIIEIDTLNQIYIVDGKDRLA
                     EIRKAMGL"
     gene            2105..2419
                     /locus_tag="PXE92_002303"
     CDS             2105..2419
                     /locus_tag="PXE92_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL5761499.1"
                     /translation="MKKVTLKQGILRGEKRITEIEVRKPLTKQLRGTNLTSLMQLSVD
                     EWCIVLPRITTPKLDKADFATMSAADLLKLSGKALDLMSEDFDEADEEDSEEQGKGEI
                     LA"
     gene            2443..2559
                     /locus_tag="PXE92_002304"
     CDS             2443..2559
                     /locus_tag="PXE92_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL5761500.1"
                     /translation="MADIATVFHWTPNTFDEMTIVELGQWREKARLRNGVES"
     gene            2623..2970
                     /locus_tag="PXE92_002305"
     CDS             2623..2970
                     /locus_tag="PXE92_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761501.1"
                     /translation="MEIKTVTFSKVITAFIFHIITLFVFTQLNEQAQATFMFFWWFFI
                     SLRFILVVGIMCVGIEELKIQEYRQTKAYACFSFISNFALCLQFVYFEHLIAAILFLI
                     SYIIYHSQTVTIK"
     gene            2972..3409
                     /locus_tag="PXE92_002306"
     CDS             2972..3409
                     /locus_tag="PXE92_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761502.1"
                     /translation="MLQQFAMMSLGYFVFMRLTIPYQDTSREMNWSHVQNDVVGAMPK
                     SQFTGKAGETMEISAELRPEITGGKMSILALEMMAEQGSAYPLISGSTFMVLGWFVID
                     RISEQETTFFADCTPRAISFSMSLKRVDDSLLANIIDEVAGFI"
     gene            3409..4647
                     /locus_tag="PXE92_002307"
     CDS             3409..4647
                     /locus_tag="PXE92_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HDL5761503.1"
                     /translation="MDFLTELTNHNHRTPAVSVTVRPKPSKDNEGEKAKDISTLITHR
                     LIQLTLTDNRGFEADQLDLELDDTDGLLALPSRGAILSVGLGWQNSPLTYKGEYTVDE
                     LTHDGPPDKVTIRARSADLRGTLTNRHERSFHRTTIGKIVKQIAEENKLKPMVGKEFE
                     NEEVKHIDQTNESSINLLQRLAEQFDAIATVKNGNLIFIKAGNATTASGKLLPLFRIT
                     RSSGDSHSFSIAEGDNYKAVKAYWHNTQTGKRGEVTWDENSQVKKVTKPTMRKKTKVK
                     RGADGKPIKGKDGKSIKETVFVKGKGRQVNAVVQSKPIESDSEAIKTLPHTYATAQSA
                     INACKRNFEKLQRGVATFSLTLAEGNAELIPELPVQVSGFKAEIDSNEWIISQVTHSL
                     NKGGGFTTALEMELKPKSED"
     gene            complement(4830..>5250)
                     /locus_tag="PXE92_002308"
     CDS             complement(4830..>5250)
                     /locus_tag="PXE92_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761504.1"
                     /translation="FVLSVDDLPFKYNKADEAMHIIANNIIRKKTAVANAILALNEVD
                     SRKSSGVQLCDLLLGAILSSYQNDITSERKKELTKWIALHLGWDKLTYDTLQEEKKFN
                     IWYFYDPTKGPRIVRTRETKLKYPLLKKKEQTFQPAR"
BASE COUNT         1569 a         1109 c         1189 g         1383 t
ORIGIN      
        1 aagcaagcaa gcaaagtgta gcgcaattta aacaagctcc gctacctttt ccagcagccg
       61 ttgttaccgt ggtgcaatgc ttgcggaaaa gccgaaaaag cgttggcgtt tttggtatgc
      121 gtttgtgaat ggcttgtttt ttgataaaaa gcattgctat gcagcctata aagcggaggt
      181 gtatcgaaaa cagtatccac cggagtttac cgaaatcact taatcctgtt aaaccccatt
      241 tcacagcccg aaccgctcgc aacccgagcg gttatttttt aaagtttacc ccaacattca
      301 accctaacct ttcccaatta aggaatacta tgtcaatttt agatacctat ctacacggtg
      361 ttgaggtggt tgaggtcaat gcaggtggtg tcaccatttc caccgctgct acttcggtta
      421 tcggagtagt ttgcaccgga gaccaagccg atgccgagac ttttccgctg aatacgcccg
      481 ttttaattac taacccgtta aattaccttg aaaaagcagg tagcaccggc acgttacgcc
      541 gcacacttaa ttcgattggc tcaatcgtta aaacgccaac ggtgatcgtg cgagttgccg
      601 agtcggacga tagcgacacc ttaactgcaa atattgtcgg cacgcaggaa aacggcaaat
      661 ttaccggtat taaggcgtta ttaaccgctc aatcaaccgt gtttgttaag ccgaaattgc
      721 tttgtgtacc acagcacgat aatcaagccg ttgcgaccga actattaagc gtggctaaaa
      781 agctgaatgc gtttgcgttt atttcagaca acggtgcaac caccaaagaa caggcatata
      841 cctatcgcca gaatttctct cagcgtgaag gaatgatgat cttcggtgac tggaaatctt
      901 ataacactga taaaaaagcc tatgataccg attatgcagt ggcccgagct tgtgcgttgc
      961 aagcctatat cgacaaaact gtcggctggc ataaaaacat ctcaaacgta gagctagacg
     1021 gtgtaaccgg tatcactaaa gcggtagagt ttgatattaa cgagagctca accgaggcaa
     1081 actacctgaa cgaaaaaggc attaccattt gcttaaacca taacggtttc cgctattggg
     1141 gttcccgcac tcttgccacc gatacccgct gggcgtttca gcagtcggtg cggacggctc
     1201 aaatcattaa agagacaatc ggagcaggct tagcttgggc ggtggatatg ccactcacac
     1261 cgttgcgtgt gaaaacaatg ctagaggcga ttaacaacaa gctacgctct tgggcatcgg
     1321 gtgatgaccc tcgcatttta ggtgctcgtg tgtgggtagc tgaagagatc accgcagata
     1381 ttatcaaatc aggcaaattt gttattaaat acgattacca ttggattccg tccctcgaaa
     1441 gcctaggctt agagcaacgg gtcaatgatg aatatgtagt ggatttagtc aatacactta
     1501 aagcgttata gaggtaaaaa tgggattacc ggcaaaactt aagaatttta atttttcggt
     1561 ggacggcaca agctatttgg gcgaaaccac cgaagtcaca cagccgaaac tggctatgca
     1621 acttgaagac taccgagcag gcggaatgat tgcccctgtg ggtgtcaata tgggtttaga
     1681 gaaactggag cttgagttca aaatcggcgg acacgaagag gatttgctca agctatttgg
     1741 tggctcaatc agtggtaatg cattccgttt caacggtgcg taccagcacg acgatgacga
     1801 ttcagtcgat gcggtagagt tagtctgccg tgggcgaatc gctgaaattg acgaaggctc
     1861 aagcaaagcc ggtgatgaca ccgagcatag ctataaagcc tcgctaacct attacaaaaa
     1921 aacggtgaac ggtgtcgata ttatcgaaat cgacaccctc aaccaaattt acattgtcga
     1981 tggcaaagac cgcttagcgg aaattcgtaa ggcaatgggt ttatagattt tcccctaaat
     2041 tttcccaaag ccccttcccc ttttttcaag gggcttttaa tgataaataa ttaaggatta
     2101 aacaatgaaa aaagtaacat taaaacaagg cattttgcgt ggtgaaaaac gtattaccga
     2161 gattgaggtg cgtaagccat taaccaaaca actgcgtggc acaaatctta cctcattaat
     2221 gcagttaagc gttgatgagt ggtgtattgt actgccacgc attaccacgc caaaattaga
     2281 caaagccgat tttgccacaa tgtcggcagc ggatttgcta aaactctccg gcaaagcctt
     2341 agatttaatg agcgaagact tcgatgaggc agacgaagag gacagcgaag aacagggaaa
     2401 gggcgagatt ttagcctaat tccacagttt gttgatgacg ctattgctga tattgctacc
     2461 gtgtttcatt ggacacccaa cacctttgat gaaatgacga ttgtcgagct agggcaatgg
     2521 cgagaaaagg cccgcttacg aaatggggtg gaaagttaaa acaagcggtc gtttttcgca
     2581 aaaaatttgc aaaactcgac cgcttgctat aaggatttta aaatggaaat taaaacagtt
     2641 acattcagta aagtgattac agcattcatt tttcatatca ttacgttatt tgtttttact
     2701 caacttaatg agcaagctca agctaccttt atgttctttt ggtggttctt catttctctg
     2761 cgattcatcc ttgtagttgg aataatgtgt gttggtattg aagaacttaa aattcaggaa
     2821 taccgacaaa caaaagctta tgcttgtttt agtttcatat ccaattttgc gttatgcttg
     2881 cagtttgttt actttgagca tcttattgcg gcaattttat ttttgatttc ttacatcata
     2941 tatcatagcc aaactgtaac gattaaataa tatgctccaa caattcgcaa tgatgtcgct
     3001 aggctatttt gtgtttatgc gattgacaat cccttatcaa gacaccagcc gagaaatgaa
     3061 ctggtcgcac gttcaaaatg atgtggttgg ggcaatgcca aaaagccaat ttaccggcaa
     3121 ggcaggggag acaatggaga tttcagccga gctacgccct gaaattaccg ggggcaaaat
     3181 gtcaatcctt gcccttgaga tgatggcaga gcaaggctcg gcttatccgt tgattagtgg
     3241 ttcaaccttt atggtgctag gctggtttgt gattgatcga atcagcgagc aggaaaccac
     3301 cttttttgca gactgcacgc cccgggcaat tagcttttcg atgtcgctta aacgggttga
     3361 tgatagtctg ctcgccaata ttattgatga ggtcgcaggg tttatttaat ggatttttta
     3421 acagagctaa ccaatcataa ccaccgcaca ccggctgttt cggtgacggt tcgcccaaag
     3481 ccaagcaaag ataatgaggg cgaaaaagcc aaagatattt ccaccctgat cacgcaccgc
     3541 ttaattcaac tcaccttaac cgacaaccga ggctttgagg cagaccagct ggatttagag
     3601 ctggacgaca ctgatggctt actcgctttg ccaagtcgag gagcgatttt atcggtcggg
     3661 ttaggctggc aaaacagccc cctgacctac aagggcgaat acacggtgga cgagctaacc
     3721 cacgatggcc cacctgataa agtcacgatt cgggcaagaa gtgctgattt gcgaggcacg
     3781 ctgaccaatc gccacgagcg gagctttcac cgcaccacca ttggtaaaat tgtgaaacag
     3841 atcgccgaag agaacaaact caagccgatg gtgggcaagg agtttgaaaa cgaagaggtg
     3901 aaacacattg accaaacaaa cgaaagctct attaatctct tgcaacgcct cgcagaacaa
     3961 tttgatgcca ttgctaccgt gaaaaacggc aatttgattt tcattaaagc cggaaacgcc
     4021 acaaccgcaa gcggtaaact gttacccctg tttcgcatta cccgcagttc gggggattcc
     4081 catagctttt cgattgccga aggggataac tacaaagcgg ttaaagccta ttggcacaac
     4141 acgcaaaccg gcaagcgagg cgaggtgacg tgggacgaaa acagccaagt taaaaaagtg
     4201 actaagccca caatgcggaa aaagactaaa gtaaaacgtg gggcagacgg caagccgata
     4261 aaaggcaaag acggcaagag cattaaagag accgtctttg taaaaggcaa aggcaggcaa
     4321 gttaatgcag tggtgcaaag taaaccgatt gaaagtgata gcgaggcaat taaaacccta
     4381 ccccatactt acgctaccgc acaatcagcg attaatgctt gtaaacggaa ttttgaaaaa
     4441 ctacaacgag gtgtggcaac ttttagccta actcttgccg agggcaatgc ggagcttatc
     4501 cccgaattac cggttcaggt ttcaggcttt aaggcggaga ttgatagcaa cgagtggata
     4561 atttcgcagg ttacgcacag tttaaataaa ggtggtgggt ttacgacagc gttagagatg
     4621 gagttgaagc cgaagtctga agactaacgc tatttttata aaatcactat aaaaaagcct
     4681 tgcatctctg atcttgaaca agtaatatta atcaaagtta cagatttatt tacataaaac
     4741 acaaagaatc ataggggcgg ctactttgtg tgattccgcc cagtgaggaa attgggcgtt
     4801 gttttacaca tataagtcct tgaggacact caccgtgcag gctggaaggt ctgctctttc
     4861 ttttttaata gtgggtattt aagttttgtt tctctcgttc ttactattct aggtcctttt
     4921 gtagggtcgt aaaaatacca aatattaaat ttcttttcct cctgtaaagt atcataagtt
     4981 aatttatccc aacctaggtg caaagcaatc cattttgtta gttctttttt acgttccgat
     5041 gtaatatcat tttgatagct acttaatatt gctcctaata ataaatcgca tagttgaacg
     5101 ccagatgatt tacgagaatc tacttcgttt aatgctagaa tagcatttgc tacggcagtc
     5161 tttttacgaa ttatattatt agcgataatg tgcattgcct catcagcttt attgtattta
     5221 aaaggtagat catcaacaga taaaacaaac
//
LOCUS       DANMBQ010000148         5226 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.149, whole genome shotgun sequence.
ACCESSION   DANMBQ010000148 DANMBQ010000000
VERSION     DANMBQ010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5226
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.149"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..623)
                     /locus_tag="PXE92_002309"
     CDS             complement(<1..623)
                     /locus_tag="PXE92_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HDL5761505.1"
                     /translation="MKAQIELPPKLLPVFAKDYRYKGAYGGRGSGKTRAFAKMSAVSA
                     YKRAMRGESGVILCGREFMNSLEESSLEEVKQAIKSEPFLANFFDVGEKYVRTKDGRI
                     SYVFSGLRHNLDSIKSKARILIAWIDEAETVSETAWRKLIPTVRENNSEIWVTWNPEN
                     RGSATDTRFRQNPPENSCIIEMSYQDNPWFPDVLEQERLNDKQRLDDA"
     gene            complement(607..1131)
                     /locus_tag="PXE92_002310"
     CDS             complement(607..1131)
                     /locus_tag="PXE92_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL5761506.1"
                     /translation="MTKKGEVKATSKGVGKLTDKQKRFVEEYLIDLNATQAAIRAGYS
                     EKTAYSIGEENLRKPEIRSAIQEAQNKRSERTQITQDDVLNGLLEVIAMSTGKKIVTE
                     TDVAKNDNGELVGFDIAKTKFEPAAANKALELLGKHLGMFKDKVDLINSDGSLNRPMV
                     IELIAPSLDDESTD"
     gene            complement(1523..1696)
                     /locus_tag="PXE92_002311"
     CDS             complement(1523..1696)
                     /locus_tag="PXE92_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761507.1"
                     /translation="MYPPAAYLVPCGRTEFSGRTYGDTVEYLVKVMGERDLCANQIDR
                     IREWQAQTKQGFK"
     gene            complement(1701..2051)
                     /locus_tag="PXE92_002312"
     CDS             complement(1701..2051)
                     /locus_tag="PXE92_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HDL5761508.1"
                     /translation="MLNWISGTIAIVILGLCVWLWGQSQMIDSLRAENRAQAQTIEQQ
                     QKANQRLTDSLEQERQAVEKIQKIANELRNKVEMAKNEITSILAQDSCAKADLPNGVA
                     DSIKRLHQQNNHKH"
     gene            complement(2024..2593)
                     /locus_tag="PXE92_002313"
     CDS             complement(2024..2593)
                     /locus_tag="PXE92_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL5761509.1"
                     /translation="MSKSLKYGSGIVCGIAAIITLVQYQHPEIRTNQAGLEIIGNAEG
                     CRRDPYKCPADVITVGIGSTEFGGEKIDPNRIYSDKEIAERWAKDLKIAESCVNRHFN
                     GKDMNDNQFSGMTSAVFNMGCYNMRFYRNKQGQYVQTTIHKLAVNKQFEEMCHRLPDF
                     IRASGKVLNGLVIRREKEKALCLTGLVAR"
     gene            complement(2586..2831)
                     /locus_tag="PXE92_002314"
     CDS             complement(2586..2831)
                     /locus_tag="PXE92_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761510.1"
                     /translation="MKLMKDMGTQSYIWSGFSTWLAWLGEQQNLMLLSLAIGIVTAIA
                     GLIQRFDEWRRRKREDERAEELHQAKMARLRKGLSDE"
     gene            complement(2974..3144)
                     /locus_tag="PXE92_002315"
     CDS             complement(2974..3144)
                     /locus_tag="PXE92_002315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761511.1"
                     /translation="MTEQLNTQSKSGEEDQEKSQDRYAVGWPSRRISDCVQHFRSRKI
                     YPFASNNDVKQG"
     gene            complement(3170..3355)
                     /locus_tag="PXE92_002316"
     CDS             complement(3170..3355)
                     /locus_tag="PXE92_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761512.1"
                     /translation="MYNLDDAIQECREKFGEDKPYFSEAGTLTFAGCKALSRLRDEKL
                     GIKAPPNFPFPRVEDLS"
     gene            complement(3372..3447)
                     /locus_tag="PXE92_002317"
     tRNA            complement(3372..3447)
                     /locus_tag="PXE92_002317"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3412..3414),aa:Trp,seq:cca)
     gene            complement(3675..4148)
                     /locus_tag="PXE92_002318"
     CDS             complement(3675..4148)
                     /locus_tag="PXE92_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761513.1"
                     /translation="MLPRKIKNKWLEPEKQKWIEELLRLWGAWEFGGLDLESRVNMIY
                     RLMKSAEGVKSLSSREVCNDSLGTLINEIFTVVTKRDVMLADILKQKYWFGRSERQIA
                     IYYQLRDSEGRKERRWQEIIQDKCKKAERIIADILESKISSSNSTDKLKKYQFSP"
     gene            complement(4138..4707)
                     /locus_tag="PXE92_002319"
     CDS             complement(4138..4707)
                     /locus_tag="PXE92_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein NinG"
                     /protein_id="HDL5761514.1"
                     /translation="MANKPPKQHKCKECGSYYIKFQSTQQVCSVKCAMAMGKRKTEAK
                     RKKSAKIDRLEQRKRLEKLKSRRDFEKDLQKIFNKFIRLRDKDLPCISCGRYHQGKYD
                     AGHYKTVGGNPELRFNEDNCHSQCVPCNRHLHGNIVNYRVNLIEKIGLERVEFLERKD
                     HPPLKLTIEQIKDLIKVYKAKCKELERVT"
     gene            complement(4835..5029)
                     /locus_tag="PXE92_002320"
     CDS             complement(4835..5029)
                     /locus_tag="PXE92_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761515.1"
                     /translation="MTKFFETIAFVMLFGIIPSCLLAINTTLMNMNIKNAPWFMVIIQ
                     LGFNITCYWLWFISVMRNVI"
BASE COUNT         1471 a         1251 c          855 g         1649 t
ORIGIN      
        1 gcatcatcaa gccgctgttt gtcatttagc cgctcttgct cgagcacatc aggaaaccaa
       61 ggattatctt ggtagctcat ttcaattatg cagctgtttt caggtggatt ttgcctgaag
      121 cgagtatctg ttgcgctccc tctattttcc gggttccaag ttacccatat ttcggaatta
      181 ttctcacgca cggttggaat taatttccgc caagcagttt cgcttactgt ttctgcttca
      241 tctatccacg caatcaaaat acgggcttta gatttgatgc tatctaagtt atgccgaagt
      301 ccggaaaaca cataagaaat ccgcccatct ttagtgcgaa catacttctc gccgacatca
      361 aaaaaatttg ctaaaaaagg ctcagacttg atcgcctgtt taacttcttc aagagagctt
      421 tcttccaatg agttcataaa ctcacgaccg caaagaataa cgccactttc ccctcgcatt
      481 gctcttttat aagcagacac tgccgacatt ttggcaaatg cccgagtctt gcctgaacct
      541 cgcccaccat aagcaccttt gtaacgataa tctttggcaa aaacaggcaa cagtttaggt
      601 ggtagttcaa tctgtgcttt catcgtctaa actcggagca attaattcaa tcaccatcgg
      661 tcgattcagt gaaccatcag aattaattaa atcaaccttg tctttaaaca ttcctaaatg
      721 tttaccgagt aactcaagag ctttatttgc ggcggcaggt tcgaattttg tttttgcaat
      781 atcaaaaccg accaactcac cattgtcatt ttttgcaaca tcagtttctg tcacaatttt
      841 tttaccagta ctcattgcaa tcacttcaag caacccattt agcacatcat cttgtgtaat
      901 ttgggttctc tccgagcgtt tattttgagc ctcctgaatt gcacttctga tttcaggttt
      961 tctcaggttc tcttctccga ttgagtatgc tgttttttcg ctgtacccag ctctaatcgc
     1021 agcttgagtc gcattcaagt caatcagata ctcttctaca aatcgtttct gtttatcggt
     1081 taatttaccc acgcctttag acgtggcttt aacctcgcct tttttagtca ttgggttaaa
     1141 ttcctttact tcattgcatt taatagatta gcaatagcat taatcagctt tggcgacacg
     1201 aacgccaaaa tagggactgt tactgctagg cttatttgcc ataaaccata ttccataaga
     1261 atctccttga tggttacggt taaaaatgta ataatttcca taacttgtta ctcattccgt
     1321 ttcaatgggt aataaaaaaa cctcgaacac cgcaaatgtt cggggttttg ttttatataa
     1381 atcacatcac ttaggtattt cctcggtgtt ttatccaacc aaccccgaaa ccatagctaa
     1441 attatgtaat atttactttc catcaaaaca aaaagggagc tgttacgctc ccattttcaa
     1501 tagcggttaa ttagataatt agctatttaa acccttgttt ggtttgtgct tgccattctc
     1561 tgatacggtc aatttgatta gcacacaaat cacgctctcc catcactttg acgagatact
     1621 caaccgtatc gccataggtt ctaccgctaa attctgttcg cccacacggc acaaggtaag
     1681 ctgccggcgg atacaaatac tcagtgcttg tgattgttct gctggtgcag ccgcttaatg
     1741 ctatcagcaa cgccattagg caaatcagct ttagcacaac tgtcttgtgc cagtattgat
     1801 gtaatttcat tcttggccat ctccacttta ttccgcagct catttgcaat tttttggatt
     1861 ttttcgaccg cttgtcgctc ttgctctaag ctatcggtta gccgttgatt ggctttttgc
     1921 tgctgctcaa tggtttgggc ttgtgcgcgg ttctcagctc ttaagctatc tatcatctgt
     1981 gactgacccc ataaccatac acacaagccc aaaatcacaa tggctatcgt gccactaatc
     2041 cagttaagca taatgctttc tccttttcac ggcggataac caatccgttc aataccttac
     2101 cactggcacg aataaagtca ggtagtcgat gacacatctc ctcaaattgt ttattcactg
     2161 cgagtttatg gatggtagtc tgcacatatt gaccttgttt attccgataa aatctcatgt
     2221 tataacaacc catattaaat acagcggacg tcattcccga aaattgatta tcgttcatgt
     2281 ctttaccatt aaaatgacga ttgacacaac tctccgcaat cttcaaatct tttgcccaac
     2341 gctcagcaat ttctttgtca gaataaatac gatttgggtc aatcttttca ccgccaaact
     2401 ccgttgagcc aatgccaacc gtgattacat cggcagggca tttatacgga tcacgtctgc
     2461 aaccctcagc attaccgata atctctaatc cagcttggtt agtgcggatt tcgggatgtt
     2521 gatattggac taatgtaata atggcagcga taccacaaac gataccactg ccatatttaa
     2581 ggcttttact catcacttaa cccctttctc aatcttgcca ttttcgcttg atgaagctct
     2641 tccgctcgct catcttcacg cttacgccta cgccattcat caaatcgctg aataagccct
     2701 gcaatggcag taacaatacc gatagcaaga ctaagtaaca ttaaattctg ctgttcgccg
     2761 agccacgcca gccaagtgct aaatcccgac caaatatagc tctgcgttcc catatctttc
     2821 attaacttca tactccaccc cgtttcgagg caataaaaaa gcccagtcgt gagactgagc
     2881 tttggttaaa aattctgcta gaatactgtt ccccaacaaa taaactagca gagggtaaaa
     2941 atgattgaat ttactctgta ccaccagaag catttaacct tgcttcacgt cattattact
     3001 ggcaaatgga taaattttcc tacttcggaa gtgctgaacg caatctgata tacgtcgaga
     3061 tggccagccc acggcatagc gatcttgaga tttttcttga tcttcttcac cgctttttga
     3121 ctgagtattt agttgttccg tcatagcaat ccctcattga tttttgtagc taagatagat
     3181 cttcaaccct tgggaaaggg aaatttggcg gagccttaat tcctaacttt tcatctctta
     3241 atcgagagag ggctttgcaa ccagcaaaag taagtgttcc agcttcagaa aaataaggct
     3301 tatcttcacc aaatttttct ctgcattctt gaattgcatc atcaaggtta tacataacat
     3361 ttactcgcat ttggaaaggg tggttggact caaaccaaca accaacgatt ttggagaccg
     3421 ctgctctacc aactgagcta cacccttaaa atccgtaaac aaaaaagccc caagcatttc
     3481 tgctcagggc tgttaaacta attcggtcgg catactgcca cgcaaacgct gaaataacta
     3541 tactcgacgt cgtttctagt tattctcctc cgaactgaat attacttcag gctgcgtctt
     3601 taactaacat tggtaaacat catttatact acgtccacca ttagcacaaa atatacactt
     3661 gttacgcact aaaatcaagg ggaaaattga tattttttca gtttatctgt agaattactg
     3721 gatgaaatct tgctttcaag aatatctgca ataattcttt ccgctttttt gcatttatct
     3781 tgaataattt cttgccatcg tctttctttt ctaccctcgc tgtcccttag ttgataataa
     3841 atagcgattt gccgctccga acgcccgaac cagtattttt gtttgagtat atcggctaac
     3901 attacgtctc ttttggtgac taccgtaaaa atctcattga tcagcgtgcc gaggctatcg
     3961 ttacaaacct ctctagatga aagactttta accccctccg cagatttcat cagccggtaa
     4021 atcatattta cccgactttc taaatccaat ccgccaaatt cccacgcccc ccataacctt
     4081 agcaactctt cgatccattt ctgcttttca ggctctaacc acttgttttt aatttttcta
     4141 ggtaacacgc tcaagctcct tgcacttcgc tttatagact ttgattaaat ctttgatttg
     4201 ttcgatagta agttttaatg gtgggtggtc tttacgctct aaaaattcca cacgctcaag
     4261 cccgattttc tcaatcagat ttactcgata attcacaata ttgccgtgca gatgtcggtt
     4321 acacggcaca cattgactgt ggcaattatc ttcattaaaa cgtagctcag gattaccacc
     4381 aacggtttta taatgccctg catcatattt cccctgatga tagcggccac aggaaataca
     4441 gggtaaatct ttatcacgca agcgaatgaa tttattaaat atcttttgta aatctttctc
     4501 aaaatctcta cggcttttca atttttccag ccgcttccgt tgctccaagc ggtcgatttt
     4561 tgcacttttt ttgcgtttcg cctctgtctt acgcttaccc attgccatag cacacttaac
     4621 agagcagacc tgctgcgtgc tttgaaattt gatgtaataa ctgccgcact ctttgcattt
     4681 gtgttgttta ggtggtttgt tagccattcc aaccctcacc atctctctta tcaaaccact
     4741 caataaaaaa gagtgaaccg gcacatacac taagaatagc gatggcgatt aaaattacag
     4801 tcagttcatt gcactggctc acttattaat ctccttaaat aacattccgc ataacagaaa
     4861 taaaccacaa ccaataacaa gtgatattaa aacctaactg aataatcacc ataaaccacg
     4921 gtgcgttttt aatattcata ttcattaaag tagtattaat cgccaacaaa cagcttggaa
     4981 taatgccaaa taacatcacg aatgcgatag tttcaaaaaa ttttgtcatc ttacttctcc
     5041 ttcccccgaa ttcgagggaa ttaataaaca cacactaaat cggagcaaaa ccgcgcttaa
     5101 aataataaag ccattcttga tatgtccatt gacagaaaac aataaaacta ccgactgctg
     5161 caaagaatgc taatggataa atcaataaat aacctacata tctaacagta agaatgacta
     5221 agaaaa
//
LOCUS       DANMBQ010000149         5205 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.150, whole genome shotgun sequence.
ACCESSION   DANMBQ010000149 DANMBQ010000000
VERSION     DANMBQ010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5205
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.150"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(14..673)
                     /locus_tag="PXE92_002321"
     CDS             complement(14..673)
                     /locus_tag="PXE92_002321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HDL5761516.1"
                     /translation="MTTLGSRIKAYREQLGISQYEVAERCTSIDNRDKNNKWGQSRIA
                     NYERNNRTPDLDDIEILSKVLGVSPETLAFDTNVQLARPTKSNSYPLISNIQAGLWTE
                     AFDFKDSEGYDYIDTEIDAGPDAFFLRISGMSMEPKFSEGDLVLIDIRKRPHPGDYVA
                     AVNGTGEATLKRYRELGEWSESGNPHFELIPLNPDFPTLSSMKQDIRIIGVAVEHRSY
                     L"
     gene            803..1009
                     /locus_tag="PXE92_002322"
     CDS             803..1009
                     /locus_tag="PXE92_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5761517.1"
                     /translation="MNKIAEIRNQIGISQAQLAVQIGWGQPRIANYETGNRTPSIYVA
                     QKIVEGLNELGANVRIDDVFPVGN"
     gene            1030..1290
                     /locus_tag="PXE92_002323"
     CDS             1030..1290
                     /locus_tag="PXE92_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761518.1"
                     /translation="MPRNELTKNARAIADLIHRKSATVTHKKLARAIGLSESQFSRTF
                     ADNVEMVAVIIDYLSIELADKDELLELKEKRYKRINLEEATT"
     gene            1454..1624
                     /locus_tag="PXE92_002324"
     CDS             1454..1624
                     /locus_tag="PXE92_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761519.1"
                     /translation="MKNQRNDTQKSSLWQEFEYRKRLKNLIESGLSVAEIETRSQQIY
                     EELKSECTTEAN"
     gene            1599..2468
                     /locus_tag="PXE92_002325"
     CDS             1599..2468
                     /locus_tag="PXE92_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL5761520.1"
                     /translation="MNAQPKQINPILKLHPKQSEAKKVSVDDGYTQIPNELLKAILRS
                     GVLGWKGSYLLATVLKTLSWHKESDWFTHSQVCEMMNIEPTKYHINQLSAARKELIRE
                     NILFEDGKETGVNLSVFEWKMVYPEKVGSSRNNRELIPEKVGNGYPEKVGNTKETITK
                     EKINNEFTNVNSVQQPETSLPKKTKSEPVDYQGVMEEFNRAVEDTPIPQIRAMSDERK
                     RSVHALAKILRKEFGGYTRQHFADYFNDFVRQASSRKDRFYFGGLDGSAWVANFGYII
                     RSKTFYKTWEDSL"
     gene            2465..3826
                     /locus_tag="PXE92_002326"
     CDS             2465..3826
                     /locus_tag="PXE92_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase"
                     /protein_id="HDL5761521.1"
                     /translation="MSQNLKNITYEVEYLLVGALLKSGLNSKARDVLSWLEPEMFATF
                     QLGVIYEAIRKQALKDNVIDMLLLNTDYGQDFATLAEIMKNTISGANLDGYAEKVRQY
                     HQRREAQRVFLDVAGELQNARDEQLDAITSTGLAHLSKLLQRGGKVKPIDMNDLLEGY
                     LELFQERAKPSFKERLLFTGIEALDGKLGGINDTDICIVAGRAGNGKTETAITFTKNI
                     IENKGSVLFFSLEMSKEQIMDRLIASASGVNSVKLRNPEMMNDEDFARMGTAIQPLQN
                     QQLYIVDKSGLTAEEIVAIAESHIQEYGKVSAVVIDYIGLVRHGKLDGKINRTYQIGE
                     SMERFKTFCKNNHTPMILLAQLNRNADGSRPTNADLRDSGSLEQDASQIIMVHNQRNK
                     DGEPAPYTEWIVTKNRFGANGTVYMQFQQGRFVECDQAEAREYFQPKETKTSSNKRYG
                     AMQ"
     gene            3823..4359
                     /locus_tag="PXE92_002327"
     CDS             3823..4359
                     /locus_tag="PXE92_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HDL5761522.1"
                     /translation="MTDFDKNIKYKIIYADPPWKYKDSGCNGSAENHYTTMNIKEICD
                     LPVQDISDKDSILFLWVTYPMLPEGLKLIEAWGFNYKTIGFQWVKTNKKNKNSFFFGL
                     GRWTRGNTECCLIATKGKPSRVSNKVSQLIIEPIQHHSKKPDIVREKIVELMGDLPRI
                     ELFARNKTQGWDVWGDEV"
     gene            4450..4665
                     /locus_tag="PXE92_002328"
     CDS             4450..4665
                     /locus_tag="PXE92_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761523.1"
                     /translation="MITYKCPKCNGELEDLSINDEWGWFLDEPYRCNGHYTGRFPNIS
                     RDSTLNRTKSCGYFSKEEVKKVNGTQR"
     gene            4649..5155
                     /locus_tag="PXE92_002329"
     CDS             4649..5155
                     /locus_tag="PXE92_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HDL5761524.1"
                     /translation="MAHSVNDIVKAHGRRYKARLKIQMIKMQGGVLVPLNEREAEALV
                     SLKNGEQYEIEVIRTRNPAFHRKVFAFLNFCFEYWSADKTEWEFFDERKQFDTFRKNL
                     TVLAGFKEITYTLDGRMRVEAQSLSYGNMEQDEFEQVYKALINAAIKHVFNNTKDENR
                     INQLYSFF"
BASE COUNT         1725 a          911 c         1173 g         1396 t
ORIGIN      
        1 gctttggtgg actttacaaa tagcttctat gctcaacagc gacaccaata atacgaatat
       61 cttgtttcat tgagctgagt gttggaaagt cggggttaag cggtattagc tcaaaatgag
      121 gattgccgga ttcagaccat tcgcctaact cccgataacg ttttaaagta gcctcacctg
      181 tgccattaac cgctgctaca taatcgcccg ggtgaggacg tttgcgaata tcgattaaca
      241 ccagatcgcc ttcactaaat ttaggctcca tcgacattcc ggaaattctt aaaaagaaag
      301 cgtccggtcc ggcatcaatt tccgtatcga tatagtcgta gccctccgaa tctttgaaat
      361 caaaggcttc tgtccataaa cccgcttgta tattgctgat caacggatat gagttcgatt
      421 ttgtcggtct ggcaagctga acgtttgtat caaaagcaag tgtttctgga gaaacaccaa
      481 gcactttgct gagtatttca atatcatcaa gatcgggagt acgattgttt ctctcataat
      541 tagcaatgcg agattgcccc catttgttat ttttatctcg attatctatt gatgtacatc
      601 tttcagcaac ttcatattgg ctgattccta gctgttctct gtaagcctta attctactac
      661 ctaaggttgt catagcactc tcctattaga ttttcctcat tttaacacgc tccgttatat
      721 ccttgtgaat cacaaaatga aatttacaat tagttcattt tgtgatttaa ttaaaagata
      781 taaatcacaa agagaaattt gtatgaataa gatagctgaa atacgaaacc aaattggtat
      841 aagtcaagct cagttagctg ttcagattgg ttgggggcaa ccaagaatag ctaactatga
      901 aactggaaat cgtaccccat ctatttacgt tgctcaaaaa attgttgagg gattgaacga
      961 attaggtgca aacgtacgaa ttgatgacgt tttccccgtt ggcaactaat ttaccccaag
     1021 aggcttgcaa tgccacgcaa tgaattaaca aaaaatgcaa gagcgattgc ggatttgatt
     1081 catcgaaaat ccgcaacggt gacgcataag aaactagcaa gagcaatcgg actgagtgaa
     1141 tcacaattta gccgtacatt tgcagataat gtggaaatgg tggcggtgat tattgattac
     1201 ttaagtattg agcttgcgga taaagacgag ttactagagc tgaaagagaa acgatataag
     1261 cgaataaatc tcgaagaagc gacaacatag aagttaccaa caatgaaaaa ttttttagaa
     1321 aaattcaaat cattctacca cagtaaaaat tcaattttta ttagagtggc aatttttatg
     1381 ctgcttgcgt ggtgggtttt taacaattaa aaaaccaccg ctggaacggt ggtaatttac
     1441 aaggagttac cttttgaaaa atcaacgcaa tgatacacaa aaaagctcct tatggcaaga
     1501 gtttgaatat cgaaaacggt taaaaaatct cattgaaagc ggtttatccg tagccgaaat
     1561 tgaaacccgt tcacaacaaa tttatgagga gctgaaaagt gaatgcacaa ccgaagcaaa
     1621 ttaacccaat tttaaaattg caccctaaac aatcagaggc taagaaagtg agtgttgatg
     1681 atggttatac acaaattccg aatgagttat taaaagcaat tttgcgatcg ggtgttttag
     1741 gttggaaagg ctcttactta ctggctaccg tcttaaaaac attgtcttgg cataaagaaa
     1801 gtgattggtt cacgcattcc caagtgtgtg aaatgatgaa tattgagccg acaaaatacc
     1861 atattaatca actttccgct gctcgaaaag aacttatccg tgaaaatatc ttgtttgaag
     1921 atggtaagga aacaggggta aatctcagtg tttttgaatg gaaaatggta tatcccgaaa
     1981 aagtagggag ttcccgaaat aatagggaat taattcccga aaaagtaggg aatgggtatc
     2041 ccgaaaaagt agggaacaca aaagaaacta ttacaaaaga aaaaataaat aatgaattta
     2101 ctaacgtaaa ttctgtgcaa cagcccgaga cctctttgcc gaaaaaaaca aaatctgagc
     2161 cggtcgatta tcaaggagtg atggaagaat ttaatcgtgc tgtggaagac acaccgattc
     2221 cgcaaattcg ggcgatgagt gatgagcgaa agcgatcggt tcacgcatta gcaaaaatct
     2281 tgcgaaaaga atttggtggc tacaccagac aacactttgc cgattacttc aatgattttg
     2341 tccgacaggc aagtagccgg aaagacagat tttattttgg cgggcttgat ggctcggctt
     2401 gggtagcaaa tttcggctac atcattcgtt cgaaaacgtt ttataagact tgggaagatt
     2461 cgctatgagc caaaatttga aaaatatcac ttacgaggtt gaatatttgc tggttggagc
     2521 attgctgaaa tccggtctta actcgaaagc tagggacgta ttgagctggt tagagcctga
     2581 aatgttcgct acctttcaac ttggggtgat ttatgaggct atccgcaagc aggcgttgaa
     2641 agataacgtg atcgatatgc tgttactcaa taccgactac ggacaagatt ttgccacgtt
     2701 ggcagagata atgaaaaaca cgatcagcgg tgcaaactta gacggctatg cagaaaaagt
     2761 ccggcaatat catcaacgcc gagaagccca gcgagtgttt ttagacgttg caggtgagtt
     2821 gcaaaatgcc cgagacgagc agttagatgc tatcacttca accgggttag ctcacctaag
     2881 caaattatta caacgtggcg gaaaagtgaa accgattgat atgaatgatt tgctcgaagg
     2941 ttatttggaa ttgttccaag aacgtgcaaa accaagtttt aaagagcgtt tgttgtttac
     3001 cggtatagaa gcattagatg ggaaactagg cggtattaac gataccgata tttgcattgt
     3061 agcaggacgt gccggtaacg gtaaaaccga aacagccatc acgtttacta aaaacattat
     3121 cgagaataaa ggttcggtgc tgttcttctc gctggagatg agcaaagagc agattatgga
     3181 taggctgatt gccagtgcaa gcggtgtaaa ttcagtaaaa cttcgcaatc cggaaatgat
     3241 gaatgatgaa gattttgccc gaatgggaac ggcgattcag cctttacaaa atcagcagtt
     3301 gtacattgtt gataaaagcg gattaaccgc agaagagatt gtggcgattg cagagagcca
     3361 tattcaagag tacggcaaag tgagtgcggt agtgattgat tatatcggtt tggttcgaca
     3421 cggcaaacta gacggcaaaa ttaaccgaac ctatcaaatc ggtgaaagta tggagcggtt
     3481 taaaactttc tgcaaaaaca atcacacacc gatgatttta ttggcacagc ttaaccgcaa
     3541 tgcagatggc agtcgcccaa ccaacgcaga tttgcgagac agtggcagtc ttgaacaaga
     3601 tgcaagccaa atcattatgg tgcataacca acgcaacaaa gacggcgagc cagcccccta
     3661 tacagaatgg attgttacta aaaatcgctt tggagcaaat ggcacggttt atatgcaatt
     3721 ccagcagggt aggttcgtag aatgcgacca ggcagaagcg cgggagtatt tccagccgaa
     3781 agaaactaaa acatcatcaa acaaacgcta tggagcaatg caatgacaga ttttgataaa
     3841 aatataaaat acaaaattat ttacgcagat ccgccttgga agtataagga tagtggctgt
     3901 aatgggagtg cagaaaacca ttacacaaca atgaatatca aagaaatatg tgatttaccc
     3961 gtccaagata tttcagacaa agattctatt ctgtttttgt gggttactta ccctatgtta
     4021 cctgagggct taaagttgat tgaggcgtgg gggttcaact ataaaacaat agggtttcaa
     4081 tgggtgaaga caaataagaa gaataagaat tcttttttct ttggcttggg acgatggact
     4141 agaggtaata ccgaatgctg tttaattgca acaaaaggaa agccatcgag ggtaagcaat
     4201 aaagtgagcc aattaattat tgagccaata caacatcata gtaaaaagcc tgacattgtc
     4261 agagaaaaga tagttgagtt gatgggtgac ttgccaagaa tagagttgtt cgccagaaat
     4321 aaaacccaag gttgggatgt ttggggggat gaggtgtgat tgtttcaagc tattgttacc
     4381 caaagtgcgg tagggtttta ttaaaaaggt tggcggttgt gaaggataac gaaggttggg
     4441 acggtttaga tgattactta taaatgcccc aaatgcaacg gagagcttga agatttaagt
     4501 attaatgatg aatggggttg gtttttagat gagccgtatc gttgcaacgg acactataca
     4561 gggcggtttc caaacattag ccgagatagc acgttaaatc gcacaaaatc ctgtgggtac
     4621 tttagcaagg aagaggttaa gaaagtaaat ggcacacagc gttaatgaca tcgtaaaagc
     4681 ccacggcagg cgttataaag caagattgaa aatacagatg ataaaaatgc aaggaggcgt
     4741 tttagtcccc cttaatgagc gtgaagctga agcattggta tcacttaaaa atggcgagca
     4801 atatgaaatt gaggttattc gcactcgcaa tccagccttt catcggaagg tcttcgcctt
     4861 tttaaatttt tgctttgaat attggtcggc agacaaaacc gaatgggagt tttttgatga
     4921 gaggaaacag tttgatactt tccgaaaaaa tctgactgtt ctggcaggat ttaaagaaat
     4981 cacatacacc ctagatgggc gtatgcgtgt agaagctcaa agtcttagtt acggaaatat
     5041 ggaacaagac gagttcgagc aggtttacaa agcattgatt aatgcagcta tcaagcacgt
     5101 tttcaacaat accaaagatg agaataggat aaatcagttg tattcgtttt tttaattaag
     5161 gcgaaatcgc catatttaat taggtttaat tgcaggagat taaaa
//
LOCUS       DANMBQ010000150         4845 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.151, whole genome shotgun sequence.
ACCESSION   DANMBQ010000150 DANMBQ010000000
VERSION     DANMBQ010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4845
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.151"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            24..497
                     /locus_tag="PXE92_002330"
     CDS             24..497
                     /locus_tag="PXE92_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HDL5761525.1"
                     /translation="MISFALVGCSSNSGESTSAVETTEANATWQSADSIQTAPMPASM
                     NQPIATQPTYQQPTYSAPQPISAAPAPMPVSSGSDSSQVETVGNCQVVRDANNAPIYS
                     QITKGCYTESHYTVGKSDTLYLIGYLTGTNANQIAQLNGLNTGSPLKVGQVLRVR"
     gene            510..710
                     /locus_tag="PXE92_002331"
     CDS             510..710
                     /locus_tag="PXE92_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761526.1"
                     /translation="MNRTLLAFAISCAFLTACSSPTQPQVEDPNMLPAGTLQPIEGSG
                     ASQDSYSWPSDIQSTSMPDSMK"
     gene            729..2009
                     /locus_tag="PXE92_002332"
     CDS             729..2009
                     /locus_tag="PXE92_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL5761527.1"
                     /translation="MKKQFILLPLVSAVLAACSSNNPAPVVNASGNNELSPGVMQPVD
                     VSAGAINSSGGWQSDIQSAPMPSSMNTTPVQTMPQPVSVPQPVATVPQPITNPVITEQ
                     PPQPTTTTKIVKKTKTVEKKVDQNFEIPRDANNAPMYNQIQKGFYDGSTYTVRKGDTM
                     FLIAYIVGKDVKEIAALNNMSEPYQLSVGQKLKTGKSATETITVEEKVTVPVEPQITY
                     QQGANGTTYASGGNITGPVKAGTANADVTPVNNGIKATTATAPAVTASVGTVNATEDR
                     TASTIRAIDGTASGAVQSSNTVSAPASSIKWQWPTSGRVISGFSSAEGGNKGIDIAGN
                     KGQDVRAAAAGKVVYAGNALQGYGNLIIIKHTDDFLSAYAHNNTIEVDEQETVKAGQK
                     IATLGSTGTNTNKLHFEIRYKGKSVDPARYLPRK"
     gene            2250..2441
                     /locus_tag="PXE92_002333"
     CDS             2250..2441
                     /locus_tag="PXE92_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761528.1"
                     /translation="MDPTEPSHRIYILLSEDRFQAEVFSTKLSESSMLLEAVKGGYIS
                     KDGKVRLLKKAEGWKIYYE"
     gene            2434..3000
                     /locus_tag="PXE92_002334"
     CDS             2434..3000
                     /locus_tag="PXE92_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HDL5761529.1"
                     /translation="MSETKIRCDWCKSSEIYMKYHDEEWGKPEFDSLKLFEKICLEGQ
                     QAGLSWITVLKKREAYRQAFHQFNPEKIAKMGEEEIDLLMQNTSLIHHRAKLEAIIKN
                     AKAYITMQQNGEDFSRFIWSFVNYQPQINDVPTLEAVPAHTETSKAMSKALKKRGFVF
                     VGETTCYAFMQSMGLVNDHLNNCVFKHK"
     gene            complement(3047..3277)
                     /gene="acpP"
                     /locus_tag="PXE92_002335"
     CDS             complement(3047..3277)
                     /gene="acpP"
                     /locus_tag="PXE92_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDL5761530.1"
                     /translation="MSIEERVKKIIVDQLGAKAEDVKPEASFIEDLGADSLDTVELVM
                     ALEEEFDIEIPDEEAEKITTVQSAIDYVQNNQ"
     gene            complement(3464..4141)
                     /gene="rpe"
                     /locus_tag="PXE92_002336"
     CDS             complement(3464..4141)
                     /gene="rpe"
                     /locus_tag="PXE92_002336"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDL5761531.1"
                     /translation="MSKNPYLIAPSILSADLARLGDDVAEVLKAGADLIHFDVMDNHY
                     VPNLTFGPAICKALRDYGIQCPIDVHLMVKPVERLIPDFAKAGADYITFHPEATEHID
                     RNLQLIRDLGCKSGLVFNPATPLSYLDYVMDKVDVVLLMSVNPGFGGQSFIPSTLDKL
                     KEVRRRIDESGYNIRLEVDGGVKINNIADIAAAGADMFVAGSAIFDQPDYQAVIAQMR
                     DELRKVG"
     gene            4335..4607
                     /locus_tag="PXE92_002337"
     CDS             4335..4607
                     /locus_tag="PXE92_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HDL5761532.1"
                     /translation="MKKGIHPENYREVLFYDASVQQGWVIRSCAATNKTMVWEDGKEY
                     PLYTLDTSSASHPVYTGKRREVNTEGRASQFKDRFKGFASTLSNQK"
     gene            4616..4741
                     /gene="ykgO"
                     /locus_tag="PXE92_002338"
     CDS             4616..4741
                     /gene="ykgO"
                     /locus_tag="PXE92_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HDL5761533.1"
                     /translation="MKILNSLKTAKSRHPDCQIVRRKGKLYVICKTNPRFKARQR"
BASE COUNT         1552 a         1038 c          910 g         1345 t
ORIGIN      
        1 aaaaatcact ttttgtttta tctctgattt cttttgcttt agtgggttgt tcaagcaatt
       61 cgggtgaatc cacttctgcg gtagaaacaa cagaagcaaa tgcaacttgg caatcagcag
      121 atagcattca aactgcacca atgcctgcct cgatgaatca acctattgcc actcagccaa
      181 cctatcagca gccgacttac tctgcaccac aaccaatttc ggcagcacca gcaccaatgc
      241 ctgtttcaag tggtagtgat agctctcaag ttgaaacagt agggaactgc caagtggtgc
      301 gtgatgcgaa taatgctcct atctattcac aaattaccaa aggctgctac acagaaagtc
      361 actatacggt aggtaaaagt gatacgcttt atttaatcgg ttatctaacc ggcaccaatg
      421 ccaatcaaat tgcgcagcta aatggtttaa ataccggctc tccactgaaa gtcgggcaag
      481 tcttacgtgt tcgttaatag gcagagaaaa tgaacagaac ccttttagca tttgcaattt
      541 cttgtgcatt tttgaccgct tgtagctcgc ctactcagcc acaagttgaa gatccaaata
      601 tgttacctgc aggcacatta caaccgattg aaggctcagg cgcaagccaa gacagttaca
      661 gttggccgtc tgatattcaa tcaacgtcaa tgcctgacag tatgaaataa ttttaggaca
      721 atcatttaat gaaaaaacaa tttattcttc tccctttagt ctctgctgtt ttggcagcct
      781 gttcttcaaa caatccagca ccggtggtga atgcttccgg taataacgaa ttaagcccgg
      841 gcgtgatgca gcctgttgat gtgagtgcag gtgcaattaa ttcaagcggt ggctggcagt
      901 ctgatattca atctgcacca atgccaagct cgatgaatac cactccggtg caaacaatgc
      961 cccagccggt ttcagtgcca caacctgtgg cgactgtacc gcagccaatt accaatccgg
     1021 tgattaccga acaaccacca cagccgacaa ccacgaccaa aatcgtgaaa aaaacgaaaa
     1081 cggtcgagaa aaaagtggat caaaattttg agatcccgcg tgatgccaac aatgccccaa
     1141 tgtacaacca aattcaaaaa gggttctacg atggctctac ctataccgta cgcaaaggcg
     1201 acacaatgtt tttgattgcc tatattgtgg gtaaagatgt aaaagaaatc gccgctctta
     1261 ataatatgag cgaaccttac caattaagcg tagggcaaaa actcaaaacc ggcaaatctg
     1321 caacggaaac tattaccgtg gaagaaaaag tcaccgtacc ggttgaacca caaattacct
     1381 accaacaagg tgcaaacggc acaacctatg cttctggcgg taatattact gggccggtaa
     1441 aagcaggcac agccaacgct gatgtcacgc cggttaataa cggtattaaa gcaacaactg
     1501 caactgctcc ggcagtaact gcttctgtcg gtacagtaaa tgcaacagag gaccgtaccg
     1561 cctccaccat tcgtgctata gatggcacag caagtggtgc cgtacaaagt agtaatactg
     1621 tttctgcacc agcttcatca attaaatggc aatggccaac cagcgggcgt gtaatttcag
     1681 gcttctcctc agcagaagga ggtaataaag gcattgatat tgccggcaat aaaggacaag
     1741 atgtacgtgc tgccgccgca ggtaaagtgg tatatgccgg taatgccttg cagggttacg
     1801 gtaacttaat catcatcaaa cataccgatg atttcttaag tgcttatgca cacaacaata
     1861 ctattgaagt tgatgagcaa gaaacggtga aagccggtca gaaaatcgcg actttaggta
     1921 gtacaggaac caatacgaat aaattacatt ttgaaattcg ttacaaagga aaatctgtcg
     1981 atccggctcg ttatttacca agaaaataag agtaactttt tagcataatc cgaccgcttg
     2041 tgtactacaa gcggtcaatt tttaggaaaa ttatgcaaat gaaaaaatat atcgcacaca
     2101 tgataagttc gttactgctg atagcttgtt cggactaccg agcaacacca actagcccaa
     2161 gcgatgctta cacttgctct ccttcttttc gctactcttt cttaaaaaaa acgtgcatac
     2221 ctttattcag tatagccgac attcaattat tggatccaac cgagccttca catcgcattt
     2281 atattttgtt atctgaagat cgatttcaag ccgaagtctt ctcaacgaag ctctctgaat
     2341 cttctatgtt attggaggcg gttaaaggag gctatatttc aaaagacgga aaagttcgtt
     2401 tactcaaaaa agctgaaggt tggaaaattt actatgagtg agactaaaat acgttgtgat
     2461 tggtgtaaaa gcagtgaaat ttatatgaaa tatcacgacg aagaatgggg aaaaccggag
     2521 tttgacagcc tcaaactgtt tgagaaaatc tgccttgaag ggcaacaagc cggactttct
     2581 tggattacgg tgttgaaaaa acgggaagcc taccgccaag cattccatca gtttaatcct
     2641 gaaaaaattg ccaaaatggg tgaagaagaa attgatttgt taatgcaaaa cactagctta
     2701 atccaccacc gagcaaagtt agaagccatt ataaaaaatg cgaaagctta tatcacaatg
     2761 cagcaaaatg gcgaagactt cagtcggttt atttggtctt ttgtgaatta tcagccgcaa
     2821 attaatgatg taccaacact tgaagctgtt cctgctcata cagaaacctc aaaagcaatg
     2881 tcaaaagcgt tgaaaaaacg tgggtttgtg tttgtaggcg agactacttg ctatgctttt
     2941 atgcagtcaa tggggctggt taatgaccat ttgaataatt gcgtgttcaa acataaataa
     3001 acacaaaaaa ttaggcgacc atttggtcgc ctaacattaa ttcagattat tgattgtttt
     3061 gaacgtaatc aattgctgat tgaactgtag taattttttc agcttcttca tctggaattt
     3121 cgatatcgaa ttcttcttct aaagccatta ctaattcaac agtgtctaaa gaatctgcac
     3181 ctaaatcttc aatgaatgaa gcttctggtt ttacatcttc tgctttcgcg ccaagttgat
     3241 caacaatgat tttttttacg cgttcttcaa tgctcatttt gtttttccta tagtgaatat
     3301 cgcataagtg cgagagttaa atagtgtaat cgaaataagt ttaaatacaa ccttttataa
     3361 aaaggtcaaa ccagactatt cctatacacc agaatatatc tgtttttcca ttctatcatt
     3421 atgtttgtgt ttaatctata gagataaatc aaatttcatt tgattaccct actttccgta
     3481 attcatctcg catttgtgca atcactgctt gataatctgg ctggtcaaaa atcgcagaac
     3541 ctgccacaaa catatctgct cctgcggctg caatgtcggc aatgttattt attttcacac
     3601 caccatcaac ctctaagcga atgttataac cgctctcatc aatacgacga cggacttctt
     3661 tcaatttatc taaggtggac ggaataaatg attgtccgcc aaagcccgga ttcacagaca
     3721 tcaataaaac cacgtcaact ttatccatca cataatctaa atagctcaat ggcgttgccg
     3781 ggttaaacac caagcctgat ttacaaccta aatcacggat aagctgtaaa tttcgatcta
     3841 tatgttccgt tgcttcaggg tggaatgtaa tataatccgc tccggctttg gcaaaatccg
     3901 gaatcaaacg ctcaaccggt tttaccatta aatgcacatc aatcgggcat tgaatgccgt
     3961 aatcacgtaa ggctttgcag atcgccggcc cgaaggtcaa attcggcacg tagtggttgt
     4021 ccattacatc aaagtgaatt aagtctgcac cggcttttaa cacctctgcc acatcatcac
     4081 ccaagcgagc taaatcggca gataaaatag acggtgcaat taaataagga ttcttactca
     4141 tatttcctca ctatcaaaaa ataaatctac gttagattac cataatttta acagcgaaaa
     4201 gagtctctct tcctaaaaat ccgttttttt acaaaacacc ataaaaaagt tatggaattg
     4261 tatttaaagt tcgtatatta tgtatcccat attttaatta tggttaatga ccttatctaa
     4321 attctggaga aaatatgaaa aaagggattc atcctgaaaa ttatcgtgaa gtgttgttct
     4381 atgatgcctc agtgcaacaa ggctgggtta tccgttcttg tgcggcaacc aacaaaacaa
     4441 tggtatggga agatggcaaa gaatacccac tttacacctt agatacctca tcggcgtctc
     4501 accctgttta cacaggtaaa cgccgtgaag tgaatacaga aggtcgtgca agtcaattta
     4561 aagatagatt taaaggcttt gcttcaacgc tttcaaatca aaaatagagg ataaaatgaa
     4621 aatcttaaac tcacttaaaa ccgcaaaatc acgccacccg gattgccaaa ttgtcagacg
     4681 caaaggcaaa ctttatgtga tttgcaaaac caacccgaga tttaaagctc gtcagcgtta
     4741 aaaaccagca ccttaataag ctaatttatt aaggtgtttt ttatttcatc ttctcaatat
     4801 tacctatttt aaccacatca acgattttat tatttcttat tccat
//
LOCUS       DANMBQ010000151         4832 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.152, whole genome shotgun sequence.
ACCESSION   DANMBQ010000151 DANMBQ010000000
VERSION     DANMBQ010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4832)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4832)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4832
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.152"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            19..477
                     /locus_tag="PXE92_002339"
     CDS             19..477
                     /locus_tag="PXE92_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein CcmH"
                     /protein_id="HDL5761534.1"
                     /translation="MLLSVTVNAAPVELHQFDSPKQESDYRALIQELRCPQCQNNNIA
                     DSNATIATDMRAKTLELLKQGKSKDEVVDYMIERYGNFVTYDPPLTPATIMLWLLPLI
                     LIALGLGVVLRRKKNKPQAVNFEQNTAKPTTHLAQDEQERLNQILNKEEK"
     gene            474..1385
                     /gene="ccmI"
                     /locus_tag="PXE92_002340"
     CDS             474..1385
                     /gene="ccmI"
                     /locus_tag="PXE92_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcmI"
                     /protein_id="HDL5761535.1"
                     /translation="MNFWLAIIFVTLIVCGVAFYPLLKKNKQIDNTKRDSLNKAFYFD
                     RLKEVENEANEGVIDDPEQTKLELQKNLLDDIPHSTQSATSEKLTLGKSWFVALILFV
                     GGISFAIYSNVGSWFSNSMLDTTHQKLDSFYERLKTEETNPLSQEEMNQFAMALRVDL
                     QSNPNDDKKWYMLGQIGMALDDGQLAHDAFSKAAQLKPDNLDYKLSHAQLLLFSEAQE
                     DKKQGETLLKEIIRQDHTNFNALSLLAFHSFEKEDFKMAAMTWGMMLKLLPDEDPSKV
                     TVERSFNMALSNLSEAEKQELQKGEKK"
     gene            1382..1987
                     /gene="mog"
                     /locus_tag="PXE92_002341"
     CDS             1382..1987
                     /gene="mog"
                     /locus_tag="PXE92_002341"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HDL5761536.1"
                     /translation="MTACKPLSKEKLKIGLVSVSDRASQGVYSDQGIPELRAWLESAL
                     TEPFELETRLIPDEQAIIEQTLIELVDAHACHLVLTTGGTGPAKRDVTPDATLAVAHR
                     EMPGFGEQMRQVSLHFVPTAILSRQVGVIRHDSLILNLPGQPKAIKETLEGVKDEQGK
                     VLVKGIFSAVPYCLQLLSEIYVETHAAICESFRPKSARREN"
     gene            1997..2335
                     /gene="glnB"
                     /locus_tag="PXE92_002342"
     CDS             1997..2335
                     /gene="glnB"
                     /locus_tag="PXE92_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HDL5761537.1"
                     /translation="MKKIEAIIKPFKLDDVREALTDVGVSGMSITEIKGFGRQKGHTE
                     LYRGAEYAIDFLPKVKVEIVIPDELEEQCIEAIMETAQTGKIGDGKIFVYDVGRVIRI
                     RTGEENEEAI"
     gene            2416..2895
                     /gene="lspA"
                     /locus_tag="PXE92_002343"
     CDS             2416..2895
                     /gene="lspA"
                     /locus_tag="PXE92_002343"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HDL5761538.1"
                     /translation="MKTGLKFLWVSLIVIIIDLWSKYIVVQHFEFGESINILPIFNFT
                     YARNYGAAFSFLADHSGWQKYFFLGLAVVISSALVVALWKNQAVKKLENIAYALIIGG
                     AIGNAIDRAYNGYVVDFLHFYWDIYHYPVFNIADIAICVGAGLLILEAFITKKEPKK"
     gene            2906..3850
                     /gene="ispH"
                     /locus_tag="PXE92_002344"
                     /gene_synonym="lytB"
     CDS             2906..3850
                     /gene="ispH"
                     /locus_tag="PXE92_002344"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDL5761539.1"
                     /translation="MKILLANPRGFCAGVDRAISIVELALEIHGAPIYVRHEVVHNKF
                     VVDGLKAKGAIFVEELHEVPDDAIVIFSAHGVSQVVRQEAKNRGLKVFDATCPLVTKV
                     HMQVARASKKGTKAILIGHEGHPEVIGTMGQYNNQEGGIYLVESVEDIANLPVSNNDE
                     LTFMTQTTLSIDDTIGVIEALKEKYPAIQGPRKNDICYATTNRQHAVRELAEQSQLVL
                     VVGSKNSSNSNRLAELASRMGVMSKLIDGPQDIDPTWLEGIETIGITAGASAPEVLVQ
                     SVISHLKTLGVTEVETLVGNEEDVVFEVPKELRIKEVK"
     gene            3850..4098
                     /locus_tag="PXE92_002345"
     CDS             3850..4098
                     /locus_tag="PXE92_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HDL5761540.1"
                     /translation="MTEINRFKLEWACRRGMRELDKMIMPFYQNHFNELNETQQQAFV
                     EMLNYSDPELFRWVMLQAPAPTEEIAELIRLMRDKIET"
     gene            complement(4305..>4832)
                     /locus_tag="PXE92_002346"
     CDS             complement(4305..>4832)
                     /locus_tag="PXE92_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5761541.1"
                     /translation="HSNQSANQYIFNSDWFTHNVPSLASIFEYVKPRRILEIGSFEGR
                     SSVFFIEEALKYQSQVEIHCIDSWEGGAEHQGVWDMGEIEQRFIHNVTLAQQKFQNVV
                     LYKHRGYSHQKMIELLANGYINYFDYIYIDGSHEAPDVLFDALLAHRLVRKGGVISFD
                     DYLWSPDETGKQRHY"
BASE COUNT         1519 a          977 c         1047 g         1289 t
ORIGIN      
        1 aaaactctca gcctaataat gcttctaagt gtaacagtta atgctgctcc ggtagaactg
       61 caccaattcg acagcccgaa acaagagtcg gactatcgtg ccttaattca agaactgcgt
      121 tgcccgcagt gtcaaaataa taatatcgcc gattccaatg cgactattgc caccgatatg
      181 cgggcaaaaa ccttagaatt gctcaaacaa ggcaaaagca aagacgaagt ggtggattat
      241 atgattgaac gctacggcaa tttcgtcact tacgacccgc ctctcacacc ggcaaccatt
      301 atgttatggc tgttgccgtt aattttaatt gccttagggc tgggggtggt gttgcgtaga
      361 aagaaaaaca aaccacaagc ggtcaatttt gagcaaaata ctgcaaaacc gaccactcat
      421 ctcgctcaag atgagcaaga acgtcttaac caaattctca ataaggaaga aaaatgaatt
      481 tctggctggc aattattttc gttacactga ttgtatgtgg cgtggcgttt tatccgttac
      541 ttaaaaagaa caagcaaatc gataacacca agcgagacag cttaaacaaa gccttctatt
      601 ttgaccgctt aaaagaagtg gaaaacgaag cgaatgaagg ggtgattgat gaccctgaac
      661 aaaccaaatt agagctacaa aaaaacttgc ttgatgatat tccacacagc acacaaagtg
      721 ccacaagtga aaaattaacg ctcggcaagt cgtggtttgt ggcattgatt ttatttgtcg
      781 gcggtatcag ctttgcgatt tacagcaatg tcggttcttg gttctccaac tcaatgttag
      841 acaccactca ccaaaaatta gacagcttct atgagcgttt aaaaaccgaa gagaccaatc
      901 cgctctcaca agaggaaatg aaccaatttg cgatggcatt acgggtagat ttacaaagta
      961 atccgaatga cgacaaaaaa tggtatatgc tcggtcaaat cgggatggcg ttagatgatg
     1021 gtcagcttgc acacgatgcc tttagcaaag cggctcaact caagccggat aacttagatt
     1081 acaaactcag ccacgcccaa ctgctgctct tttccgaagc acaggaagac aaaaaacagg
     1141 gtgaaacctt gttaaaagag attatccgcc aagaccacac aaactttaat gcgttaagtt
     1201 tattggcgtt ccactccttt gaaaaagaag atttcaaaat ggcggcaatg acgtggggaa
     1261 tgatgttaaa actactgcct gatgaagatc ctagcaaagt aacggtagaa cgcagtttta
     1321 atatggcgtt atccaattta agtgaggcgg aaaaacaaga attgcaaaaa ggtgagaaaa
     1381 aatgaccgct tgtaaaccac ttagcaaaga gaagttgaaa atcggcttgg tgtcggtttc
     1441 agaccgagcc tcgcaggggg tttattcaga ccaaggcatt cccgaattaa gggcgtggct
     1501 tgaatctgcc ttaaccgagc cgtttgagct ggaaacccgc ttaattcccg atgagcaagc
     1561 cattattgag caaaccttaa tcgagttagt cgatgctcac gcttgccatt tggtattaac
     1621 caccggcggc accggcccgg caaaacgtga tgtcacccca gatgccaccc ttgctgtcgc
     1681 ccaccgagaa atgcccggct ttggcgaaca gatgcgacaa gtgagccttc acttcgtgcc
     1741 aaccgccatt ctctctcgcc aagtgggagt aattcgccac gacagtctga ttttaaatct
     1801 gccggggcaa ccgaaagcaa ttaaagaaac gctggaaggt gtgaaagatg aacagggcaa
     1861 agtattggtt aaaggtattt ttagtgccgt gccatactgt ttacaacttt taagcgaaat
     1921 ttatgtcgaa acccacgcag ctatttgcga aagtttcaga cccaaatcgg caagacgaga
     1981 aaattaaggc taaaaaatga aaaaaataga agcaattatt aaacctttta aattagacga
     2041 tgtgcgtgaa gccttaaccg atgtgggtgt cagcggaatg agtattaccg aaatcaaagg
     2101 gtttggcaga caaaaaggac ataccgagct ttatcgtggg gcggaatatg cgattgattt
     2161 tctaccgaaa gtgaaagtcg aaatcgtgat tcccgacgag ttggaagaac agtgcattga
     2221 agcaattatg gaaaccgccc aaaccggcaa aatcggcgat ggcaagattt ttgtgtatga
     2281 tgtcgggcgg gtgatccgca ttcgtaccgg cgaagaaaat gaagaagcga tttagttttg
     2341 caaaaaatcc ggcaaaaacg accgcttgca gggggatttc catctactct ttttacatta
     2401 aattttggat attaaatgaa aacaggctta aaatttcttt gggtgagttt aattgtaatc
     2461 atcattgacc tttggtcaaa atacattgta gtgcaacatt ttgaatttgg tgaaagcatt
     2521 aatattttgc cgatttttaa cttcacttac gcccgaaact acggggctgc ctttagtttc
     2581 cttgccgacc attccggctg gcaaaaatat ttctttttag ggctggcggt agtgatttcc
     2641 agtgctttag tggtggctct ttggaagaat caagcggtca aaaaattaga aaatattgcg
     2701 tatgccttaa ttattggtgg agcgattggg aatgccattg accgtgctta caacggctat
     2761 gtagttgatt tccttcattt ttattgggat atttatcact accctgtgtt taatattgcc
     2821 gatattgcga tttgtgtggg tgcaggctta ctgattttag aagcctttat aaccaaaaaa
     2881 gaaccgaaaa aataagagtg attaaatgaa aattttatta gcaaacccac gcggtttttg
     2941 tgccggcgtg gatcgagcca tttcgattgt tgaattagcc ttagaaattc acggtgcacc
     3001 tatctatgtt cgccacgaag tggtacataa caaatttgtg gtggatggct tgaaagccaa
     3061 aggggctatt tttgttgagg agctacacga agtgccggac gatgctatcg tgatcttctc
     3121 agcccacggg gtgtcgcaag tagttcgcca agaagccaaa aatcgtggct taaaagtgtt
     3181 tgatgccact tgcccactcg tgaccaaagt gcatatgcag gttgcccgag ccagtaaaaa
     3241 agggacaaaa gcaattttaa tcggtcacga aggtcaccct gaagttatcg gcacaatggg
     3301 acaatacaat aaccaagaag gtggcattta tttggtagaa tcggtggaag atattgccaa
     3361 cttgccggtt tccaacaacg atgaattaac ttttatgacg caaaccacac tttccattga
     3421 cgataccatt ggcgtgattg aggcgttaaa agagaaatat ccggcaattc aaggccctcg
     3481 caaaaatgat atttgttatg ctaccaccaa tcgccaacac gcagtgcggg aactggcaga
     3541 acaatcacaa ttagtgttag tggtaggttc aaaaaactcc tcgaactcaa atcgtttggc
     3601 ggaactcgcc tctcgaatgg gtgtgatgtc aaaactgatt gatggtccgc aagatattga
     3661 tccaacttgg ttggagggta ttgaaactat cggtattacc gccggtgctt ccgctcctga
     3721 agtgttggtg caatcagtaa tttcgcattt aaaaaccctt ggcgtaaccg aagttgaaac
     3781 cttagtcggc aacgaagaag acgtggtgtt tgaagtcccg aaagagttac gcatcaaaga
     3841 ggtaaaataa tgacagaaat caaccgcttt aaattagaat gggcgtgccg acgtggtatg
     3901 cgtgagttag acaaaatgat tatgccgttt taccaaaatc attttaatga actcaatgaa
     3961 acccaacagc aagctttcgt tgaaatgctc aattacagcg acccggaact gtttcgctgg
     4021 gtaatgctgc aagcacctgc cccaaccgaa gaaatcgctg aattgattag gttaatgcga
     4081 gataaaattg agacctagag ctaatagatt aacctcttct ttggggtaaa tatatagcta
     4141 cttaccccaa agaagactaa attcattcaa cttttacaaa ataaccctaa actagaaaag
     4201 ttaatcttcc aatttaataa tatgttgctg ataagctatt aaaccttgta ttacatgcac
     4261 tttctgctga taggtattga catagtgatc aacagcgggt tttactaata atgacgctgt
     4321 ttacctgtct catctggtga ccaaaggtaa tcatcaaaac taataacgcc tccttttctc
     4381 actaaacgat gtgcaagtaa agcatcgaac aacacatctg gcgcttcgtg agatccatct
     4441 atgtaaatat agtcaaaata atttatatat ccatttgcga gaagttcaat cattttttgg
     4501 tgagaatagc cacggtgctt atataacaca acattttgga atttctgttg cgcaagagtg
     4561 acattatgga taaatcgttg ttctatttct cccatgtccc aaactccttg atgctctgct
     4621 cccccttccc aactatcaat acaatgaatt tcaacttgtg attgatattt caatgcttct
     4681 tcaatgaaaa agacagatga tctaccttca aatgatccaa tttctaaaat cctccgaggt
     4741 tttacatatt caaaaataga agctaatgaa ggaacattat gagtaaacca atcagagtta
     4801 aaaatatatt ggttggctga ctggttggaa tg
//
LOCUS       DANMBQ010000152         4817 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.153, whole genome shotgun sequence.
ACCESSION   DANMBQ010000152 DANMBQ010000000
VERSION     DANMBQ010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4817
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.153"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(99..596)
                     /locus_tag="PXE92_002347"
     CDS             complement(99..596)
                     /locus_tag="PXE92_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL5761542.1"
                     /translation="MQQLIKNIEQWAEDRNLINGSTPQKQMLKLMEEFGELCAGVATN
                     EFETILDSLGDCLVICTIMRKQLKMEKLFSISHCDNTNFNCGVAAQIVQANIDLGNVA
                     SELSRGCDLSRLEDYLSGFENQLDLIAQFYKTDVQTALLYAYIQIKNRKGKMIDGVFV
                     KAEDL"
     gene            complement(580..780)
                     /locus_tag="PXE92_002348"
     CDS             complement(580..780)
                     /locus_tag="PXE92_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761543.1"
                     /translation="MTDTKRLDFIKKHKMEIRYNGLSDEFVISNHAENSQHFRMARNA
                     DLRTAIDEAMKEMRGLNNATTN"
     gene            complement(777..1295)
                     /locus_tag="PXE92_002349"
     CDS             complement(777..1295)
                     /locus_tag="PXE92_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL5761544.1"
                     /translation="MNEDKFFSVDVSNDIHILNLHETLEQAKQSCLNGATEAYEFAGD
                     MDDHESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERESELFGEVEQVIEPPTLVENNG
                     WISIEDKLPPIETDVLGLCDISGMQLILIVSRELADNEWYFLSVNQYGLDDDVIAVTH
                     WQPLPKLPKDNQ"
     gene            complement(1405..2208)
                     /locus_tag="PXE92_002350"
     CDS             complement(1405..2208)
                     /locus_tag="PXE92_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdQ family protein"
                     /protein_id="HDL5761545.1"
                     /translation="MDKSTIQQISTLAVAATKEVQTDFGTVMLPEGIKLQNLEPFQAH
                     RNQFRAAFSTQRFGSLIEYATANAQENAQCFIDQEKMSAEIVFDMGNREQAGHAKHRA
                     NLVMKKTAAYKALCEINGSRRSQRDFSDFLEDWGGYLTAYHHEDEISIKNAVQAVRKM
                     TIDYARNEEHELSDFAAKKSAMESVEAKSTLQLPTHLVFTCNPYNGLDTRSFTLRVQV
                     LTGSGEPVLTARLVQAEQIEEAIATEFAEKLSDALSETSIKVNIGTIEI"
     gene            complement(2278..2637)
                     /locus_tag="PXE92_002351"
     CDS             complement(2278..2637)
                     /locus_tag="PXE92_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761546.1"
                     /translation="MAKTNVPEFLDELDCGIFKDKLATALSEVALGVLTHDKKGKVTV
                     EFSLDKMDSDSPSVQIQHKLSYVKPTKRGKSAEEDTTATPMYVHKGGALSATPEKTET
                     AVKESPSGLKALSKAAA"
     gene            complement(2673..3131)
                     /gene="ssb"
                     /locus_tag="PXE92_002352"
     CDS             complement(2673..3131)
                     /gene="ssb"
                     /locus_tag="PXE92_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5761547.1"
                     /translation="MAGINKVIIVGRLGNDPELRTMPNGDTTAKISVATSTEWTDKVS
                     GDKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEGKLRTRKWQAQDGTDRWTTEIIA
                     DQLQMLGSSSSGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDDIPF"
     gene            complement(3134..3331)
                     /locus_tag="PXE92_002353"
     CDS             complement(3134..3331)
                     /locus_tag="PXE92_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761548.1"
                     /translation="MARKIDAGVEIVEVDKLFIAKFFYDGKLQHTTYPQYSRQNAIML
                     INRKIERFNVGRDKPIKLYKE"
     gene            complement(3315..3500)
                     /locus_tag="PXE92_002354"
     CDS             complement(3315..3500)
                     /locus_tag="PXE92_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761549.1"
                     /translation="MNKMKQLAPFALLILLLGIVGRMDYDDHIQMQRYKCERNQGVWQ
                     VESNGNQYCGGKYGTKN"
     gene            3714..3989
                     /locus_tag="PXE92_002355"
     CDS             3714..3989
                     /locus_tag="PXE92_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761550.1"
                     /translation="MKNNILITYDLNKSGQNYAALIEKIKTLGAWAKVQQSAWYLHTS
                     YSSKEVLEMLSTVTDYNDSLFVAQLSEANWRGLSNEVSKFIQEQWWK"
     gene            complement(3992..4243)
                     /locus_tag="PXE92_002356"
     CDS             complement(3992..4243)
                     /locus_tag="PXE92_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761551.1"
                     /translation="MKNKNFEIAKVVILNEQLGSPKDLELKVVENGLSDEDKYHIKQA
                     VLKAVENGCLDPEMLASRCCSAIETINKSGINTGNGSCE"
BASE COUNT         1249 a         1007 c          931 g         1630 t
ORIGIN      
        1 ggctaaacat aatcaacgcc aacgaagaag aaaccgaaac gcttgttgag tggctaaatg
       61 cttttctgca agaggtttct gtttttgtgg cttaggtact ataaatcttc tgctttcaca
      121 aacacgccat caatcatttt tccttttcga tttttgattt gaatataagc atagaggaga
      181 gctgtttgta cgtctgtttt gtagaattga gcgataagat caagctgatt ttcaaagccg
      241 cttaagtaat cttctaatcg agataaatca caacctctag ataactcact tgctacatta
      301 cctaaatcaa tattggcctg aacaatctga gccgcaactc cacaattaaa attggtatta
      361 tcgcaatggc taatgctaaa cagtttttcc attttgagct gtttacgcat aatcgtacaa
      421 atcactagac agtcacctag actgtctaaa atagtttcaa attcattggt tgctacacct
      481 gcacataatt ccccaaactc ttccattagt tttaacattt gcttttgtgg ggtagagccg
      541 ttaattaaat tgcggtcttc cgcccattgt tcgatgtttt taattagttg ttgcattgtt
      601 tagtcctctc atttctttca ttgcttcatc aatcgccgtg cgtaaatcgg catttcttgc
      661 catacggaaa tgctggctgt tttcagcgtg attactaata acaaattcgt ctgataagcc
      721 attgtagcgg atttccattt tgtgcttttt gataaaatct aagcgtttgg tgtctgtcat
      781 tggttgtcct ttggcagctt tggaagtggt tgccagtggg ttactgcaat cacatcgtca
      841 tcaagcccat attgatttac actaagaaaa taccactcgt tatcggcaag ttctcttgaa
      901 actattaaaa ttaactgcat tcctgaaata tcgcataacc ctagcacatc cgtttcaata
      961 ggtggtaatt tgtcctcaat ggatatccag ccattatttt ctacaagtgt tggtggttca
     1021 ataacttgtt caacttcccc aaataactct gattctcttt cttcgtcggt tagtgggcgg
     1081 atatctgatt ttgctctacc taaaacaaca ccataaactg catagggtaa atcataggct
     1141 tcatagcttt cgtgatcatc catgtcaccc gcaaactcat aggcttcagt agcaccattt
     1201 aaacagcttt gttttgcttg ctctaaggtt tcgtgcagat ttaggatatg tatatcattt
     1261 gatacatcca ccgaaaaaaa tttgtcttca ttcattttct ttctccaaaa taccaatagt
     1321 tgagagaata ataaccgctt gtattcaaca agcggtcaat tttcattaaa aacttacaag
     1381 taaacttata agctaactta caagctagat ctcaatcgta ccgatattga ccttgattga
     1441 tgtttcgcta agtgcatcgg atagtttttc cgcaaactca gtcgcaatcg cctcttcaat
     1501 ttgctcagct tgaactaagc gggcggttaa taccggctca ccgctaccgg ttagcacctg
     1561 tacacgcaga gtaaatgatc gagtgtctaa gccgttatat gggttgcaag taaatacaag
     1621 gtgagttggt agttgcagtg tagatttagc ttccaccgat tccattgctg attttttggc
     1681 tgcgaaatcg ctgagttcat gttcttcgtt tcgggcgtag tcaatcgtca ttttacgcac
     1741 cgcttggacg gcatttttaa tactgatttc atcttcgtgg tggtaagcgg tcaagtagcc
     1801 gccccaatct tcgaggaaat cagaaaaatc acgctgtgag cggcgtgagc cattaatttc
     1861 gcatagagct ttgtaggctg cggttttctt catcaccaaa ttagcacgat gtttagcgtg
     1921 accggcttgc tctcggttgc ccatatcgaa tacaatttcc gcactcattt tctcttggtc
     1981 aataaagcat tgtgcgtttt cttgggcatt ggcggtagca tattcaatca ggctaccaaa
     2041 acgttgcgtt gaaaacgctg cacggaattg attacggtga gcttggaaag gctctaaatt
     2101 ttgtaattta atgccttcag gtaacattac tgtgccaaaa tcagtttgaa cctctttagt
     2161 cgcagctaca gcaagagtag agatttgttg aatagttgat ttatccattt tgagttcctt
     2221 tttgtttaag taaaaataaa gccacgcatt aacgtggctt ggattgaaaa taattgatta
     2281 tgcagcagct ttagagagag cctttaaacc gctagggctt tcttttactg ccgtttctgt
     2341 tttttcaggt gtagcagata atgccccacc tttatgaaca tacattggtg tggcggtagt
     2401 atcttcttcg gctgacttac cacgtttggt cggtttgaca tagctcaatt tgtgctgaat
     2461 ttgaacagat gggctgtcgc tatccatttt gtctaagcta aattcaaccg taactttccc
     2521 tttcttatcg tgggttagta cgcctaacgc cacttctgaa agagctgttg ccagcttgtc
     2581 tttgaaaata ccgcaatcta attcatctaa gaattcaggt acatttgttt ttgccatttt
     2641 gggttctcct aattagggtt tgaataaaat tattagaacg gaatatcatc atcaaaatct
     2701 cgtgattctg aatccgtcat tacgtggtta tatggattgg ttggcggtgg gtttcctgcc
     2761 ggttcggttg cccaattatt attgctgttt ccgctgcttg agctaccaag catttgtagc
     2821 tgatcagcga tgatttcagt cgtccagcgg tctgtgccgt cttgggcttg ccatttgcga
     2881 gtacgtagtt tgccctcaac atagacttgt gagccttttt tcaggtattt gccaataatg
     2941 tcagctaaat tccgaaaggc gataatgcta tgccactctg tggcttgttt tttatcgcct
     3001 gatactttat ctgtccattc ggtcgaagtt gctacgctga ttttggcggt tgtatcgccg
     3061 tttggcattg ttcgcaattc cgggtcgtta cctaggcgac cgacaataat cactttgtta
     3121 attcctgcca ttgttattcc ttataaagtt taattggttt atctctgcca acgttgaacc
     3181 gctcaatttt gcggttaatc aacataattg cgttttggcg gctgtattgt ggataggttg
     3241 tgtgctgtaa tttgccgtca taaaaaaact tggcgataaa tagtttatct acctcaacaa
     3301 tctcaacacc ggcatcaatt tttcgtgcca tatttccctc cgcagtattg attgccatta
     3361 ctctcaactt gccaaacgcc ttgatttcgt tcgcatttgt aacgttgcat ttgtatgtgg
     3421 tcgtcataat ccattcgccc gacaatgcct aatagcaaaa ttagcaaggc aaatggggca
     3481 agttgtttca ttttgttcat aggattgtcc tttagggtta aaaaaagccc acgttttacg
     3541 gtgggcaaat ggagcgactt gcgtctagtt gtgggtattc cggaacacac ttggtgaaat
     3601 atgctttgga ataagtgcct ttctttatac ttgtaaggct caagtccctt attgcctctc
     3661 acaactctaa ggaatataat caaggctctc acaactcaaa taaggattaa gttatgaaaa
     3721 ataatatttt aattacttat gatttaaata aatcagggca aaattacgca gcactcattg
     3781 aaaaaattaa aactcttgga gcttgggcta aagtacagca gtcagcttgg tatcttcata
     3841 cttcatattc ctcaaaagag gttttagaaa tgctaagcac cgtaactgat tacaatgact
     3901 ctctttttgt tgctcaatta tccgaggcta attggagagg attatccaat gaggttagta
     3961 aatttattca agaacaatgg tggaaataga cctattcgca acttccatta cctgtattta
     4021 ttccgctttt attgattgtt tcaattgcag aacaacatcg tgatgcaagc atttctgggt
     4081 ccaagcaacc attttctaca gctttaagta cagcctgttt gatatggtat ttatcctcat
     4141 cagacaggcc attctctaca acctttaatt ccaaatcttt agggcttcct agttgttcat
     4201 ttaaaataac aactttcgca atttcaaaat ttttgttttt cataattacc tcgtgtttaa
     4261 attattccaa aacccactca taataggctt tggaataaat gcgtgtctgc ccacgccgtc
     4321 gcccgccctg catttcgcct gttcagtcgg gtgctgcttg tatccgtact tactcaaact
     4381 tgagataagc gtgattgctt aggactgata ccagtgttgc cttttcagct ctccacacct
     4441 tgcgagtgtg ttgcctaaac cttgccacct ctgtttggca agtcgttcaa atttgtatgt
     4501 cagggtctaa ccaaccttgc cgagtgataa agcattactt tacaactgct cgaggttgtt
     4561 aatatcgtcc gcacaagcac taaattgtta aagaacatcc cacagtctct gcttatctct
     4621 cggctattgc ctgctatgtg ggctaggtct agaaccttta ttcaagccct cagtaaaggg
     4681 ctttgataaa aattcttagt gaatgtaggc ttgccaaagt tgttgagctt gttctgcgtt
     4741 cattttgtcg ctttggttcc agtcgattaa cttgccattt ctgaacattg ctctttcaat
     4801 cacaaactct tgcgtgg
//
LOCUS       DANMBQ010000153         4758 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.154, whole genome shotgun sequence.
ACCESSION   DANMBQ010000153 DANMBQ010000000
VERSION     DANMBQ010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4758
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.154"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..530)
                     /locus_tag="PXE92_002357"
     CDS             complement(<1..530)
                     /locus_tag="PXE92_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761552.1"
                     /translation="MEGLIMGLQLIPHFPELAISRRTYLHDMPMYCFVSKNWIFSAKD
                     RAKREALGNLLACGGEMMKSFIFKRSLFSEIWFEDILLEDEEKELIRILYNKPEPEYQ
                     VEEKIDWEAREARRKQADYDKWQSYDERNPFHYQIFPTDTIAYAQQQVEKFIEDVDNF
                     LEWFYDDEVKRYILER"
     gene            complement(1063..1389)
                     /locus_tag="PXE92_002358"
     CDS             complement(1063..1389)
                     /locus_tag="PXE92_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5761553.1"
                     /translation="MLHSKGKILPKITLNEIETKERFAIALRKEMHAQYWTGKMVANA
                     LDVSEKTVKDWVAGKRLPSSLDLLALMRISSCVRQLVWDISKSEECYQDAEMLKQICF
                     VLLSNL"
     gene            1437..3068
                     /locus_tag="PXE92_002359"
     CDS             1437..3068
                     /locus_tag="PXE92_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDL5761554.1"
                     /translation="MVTRTKNQPKNQAVSYIRMSTEHQEFSPDLQRCFIENYAKENGL
                     EIIREYIDEGKSGLTAEHRPQFLSMIQLVQSGQADFDHILVYDVSRWGRFMNIDESGH
                     YELICTYQGIKVHYCAEPFKGNDIASQIYKTMKRLSVGDYCRELGVKVFNGQKNLIQH
                     GFRQGGVAGFGLRRRLIDCQGNPKFDLQRGDRKSLQTDRVILVAGPKEEQEIVRQIYH
                     DFVYQHKTEQQIADSLNAQGIVTDRNTAWTKGVVHQILINEKYVGHNVWNKRSASKTR
                     EYKGKNPVEEWVRAENVFEAIVPQALFNAAQTIIHQRSARLSDDEMLEQLKLLLKEKG
                     KLSGLIIDEAENCPSSSAYSSRFGSLLNTYTLINYEPERDYHYVEINRLLRQQHKNFV
                     QQTLDTIIELGGVVLSDDVTDLVHINNEFTASIVLSRCRLTPSGSKRWLIRFDTSLNP
                     DITIAVRINESATEILDYYLLPTTEKVNEKLRLAESNPAELEIYRHDNLDRFFIMVER
                     ILVKEFIYAKRHHSNSSYRQNSGTQSQNAQSESLC"
     gene            2983..3876
                     /locus_tag="PXE92_002360"
     CDS             2983..3876
                     /locus_tag="PXE92_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL5761555.1"
                     /translation="MQNDTIQILPIDKIRVLNPRTRNQKVFADLVENIATIGLKRPIT
                     VTPSVDSAEYYDLLCGQGRLEACQVLGELFIPCRVVNANSEESYLISLVENIARRQHS
                     YMELLSGIKILNDRGYKPVDIARKIGFSKSHVNSILHLINAGEERLINAVEQGILPIT
                     IAISISRSDDQEVQKQLAELYTNGTLKSTDIAKIRNLIHRRNLAGKKANTGISGSIRS
                     SIYNPKTVVNIYKEETERQKMMIKQADYDEKQLSIILSCLNKLFEDKYFQLVLKSEHL
                     DDMPKDLSQRMLKQREGNIYA"
     gene            3869..4732
                     /locus_tag="PXE92_002361"
     CDS             3869..4732
                     /locus_tag="PXE92_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL5761556.1"
                     /translation="MPKHITYAFHNQLISLPIDEIIPLKKMDKNFEKSTKFQSILASI
                     REIGIVEPVVVYPEENNQYILLDGHSRVHALKKLGVDKVLCMISTDDEGFTYNKQINR
                     LTAVQENKMLMKTIERGVSDELIARTLNINLKALRQKMNMLNGITREVVDILANKQVS
                     KEIFRILRKMKPERQIEVAQMMIASNKFTLTYANMMLLSSRKEELVESHKSKTTNDDL
                     TDLSIMQKELERLKENYKISEEKLADLKMGLVVAKGYVKKLLNNAAVVDLLENDQSEI
                     YLTLKEVCDIQ"
BASE COUNT         1563 a          915 c          927 g         1353 t
ORIGIN      
        1 ttcctttcta atatatagcg ttttacctca tcatcgtaaa accattcaag aaagttatca
       61 acatcttcaa tgaacttttc tacctgttgc tgtgcatatg ctatcgtatc ggtagggaag
      121 atttgataat gaaacggatt gcgttcatca taactctgcc atttgtcata atcggcttgt
      181 ttacgccgcg cttctcttgc ctcccagtcg attttttctt ccacttgata ttctggctct
      241 ggcttattat acaaaatacg gatgagttcc ttttcttcat cctcaagcag aatatcttca
      301 aaccagattt cagaaaatag gctgcgcttg aaaatgaaag acttcatcat ttcccctcca
      361 cacgccaata agtttcccaa tgcttcccgt ttcgctctat cttttgccga aaatatccag
      421 tttttcgata caaaacagta cattggcatg tcatgcaaat aggttcttcg tgaaatggct
      481 aattcaggaa aatgaggaat aagctgtaac cccattatta agccttccat actgcacacg
      541 atcttactta attgtccgta atcgcgtaaa aaagcaatgt cagtttttat caaccacaac
      601 gataggctga ctaatatgaa cataaagatg agataataga tcggttttaa ggctaaggcg
      661 cgccgacaaa gccacattaa gagtggaatc gtaacgagat caaagaaaaa tgatgagtct
      721 atgatgattt ccttatgtga gttgatgaat aatcaggcat gaaggaaacc ttaaaaagga
      781 aaagtccctt cattaccact ttttaaaacc ttttaaggct taaaaatcaa aagtcgtaat
      841 gaagggacta ttgtccgtgg gcaaaaaggt attagttata gggggctttg tcaagcgaaa
      901 atttactgtg cattttctcg ccaaaactga tttaagcctt gataaaatct cgaaagtacc
      961 ttgtcaagaa aaatcttttt agtggtttga ttgctagttt tttgagcaaa actatgctgt
     1021 aatgcagtaa aaatacagtt tctatctgtg tttggaatcc agttacaaat tggagagtaa
     1081 tacaaagcat atttgcttga gcatctcagc atcttggtag cattcttctg attttgaaat
     1141 atcccaaaca agctgccgta cacatgatga aattctcatt aacgccaata aatctaggct
     1201 acttggcaat cttttccctg caacccaatc tttaactgtt ttctcactca catctaatgc
     1261 attggcgacc attttccccg tccaatattg agcatgcatt tcctttcgta acgcaattgc
     1321 aaaccgctct ttcgtttcaa tctcattgag tgtaattttg ggtaagattt taccctttga
     1381 gtgcaacata tttcctcccg attcctttat attggtgtag ataaggagtc attagaatgg
     1441 ttacacgtac aaagaatcaa cctaaaaatc aggcggtttc ctacattcga atgtcaacgg
     1501 aacaccaaga attttcacca gaccttcaac gttgctttat cgaaaattat gctaaagaaa
     1561 atgggctaga aatcattaga gaatacattg atgaaggaaa aagtgggcta accgcagaac
     1621 accgcccaca attcctttca atgatacaac tcgtacaaag tggacaagcc gacttcgatc
     1681 atattttggt gtatgacgtg agtcgttggg gtcggtttat gaatattgat gaatcggggc
     1741 attatgaact gatttgtacc taccaaggca ttaaagtcca ctattgcgcc gagccattca
     1801 aagggaatga tattgcctct caaatatata aaaccatgaa acgtttgtcg gtaggagact
     1861 actgtcgtga actcggagtg aaagtattta acggtcaaaa aaatctgatc caacatggat
     1921 ttagacaagg tggggtagct ggatttggat tgcgtaggag attgattgac tgtcaaggaa
     1981 accctaaatt tgatctccaa cgtggagata gaaagagcct acaaaccgac agagtgattt
     2041 tggttgcagg cccaaaggaa gagcaggaaa ttgtccgaca aatttaccat gattttgttt
     2101 atcaacataa aacggaacaa caaattgctg atagcttaaa tgcacaaggc attgttactg
     2161 atagaaatac agcatggacg aaaggcgtag tacatcaaat ccttattaac gaaaagtatg
     2221 tcggccacaa tgtttggaat aaacgtagtg catcaaaaac acgcgaatat aaaggtaaaa
     2281 accccgtaga agagtgggtg cgagctgaga atgtatttga agctatcgtg ccacaagcct
     2341 tatttaatgc agcccaaacc attattcatc aacgctccgc ccgattatct gacgatgaaa
     2401 tgttagagca actcaagcta cttttgaaag agaaagggaa gctgtctggc ttgatcattg
     2461 atgaagccga aaattgtcca tcaagtagcg cgtacagtag ccgatttgga agcctactta
     2521 acacatatac tttaattaac tatgaacccg aacgggatta ccactatgta gagatcaacc
     2581 gattactccg tcagcagcat aaaaatttcg tacaacaaac acttgatacc attattgaat
     2641 tggggggagt ggttttgagc gatgatgtaa ccgatttagt ccacatcaat aatgaattta
     2701 ccgcctcaat cgtattaagt cgttgtcgcc taacgccatc aggaagcaaa agatggttga
     2761 tccgatttga taccagttta aatcccgaca taacaattgc agtgcgcatc aatgagagtg
     2821 ccacagaaat tcttgattac tacctgcttc ccacaactga aaaggtaaat gaaaaactac
     2881 gattggctga gagtaatcct gccgaacttg aaatctaccg ccatgataat ttagatcgct
     2941 tttttattat ggttgaacgt attttagtca aggagtttat ctatgcaaaa cgacaccatt
     3001 caaattcttc ctatcgacaa aattcgggta ctcaatccca gaacgcgcaa tcagaaagtc
     3061 tttgctgatc tggtcgaaaa cattgcaacg attggtctca agagacctat taccgtaacg
     3121 ccatctgtcg atagtgctga atattatgat ttgttatgcg gtcaaggtcg gcttgaggct
     3181 tgtcaggtgc ttggtgagct attcatacct tgtcgcgttg tgaacgcaaa tagtgaagaa
     3241 agctacttga tcagccttgt ggaaaatatt gccagacgtc agcattccta tatggagctg
     3301 ctttcaggca tcaaaatact caatgataga ggttataagc ccgttgatat tgctcgcaaa
     3361 atcggtttct caaaaagcca tgtcaacagt atcttacacc tcatcaatgc tggggaagag
     3421 cgccttatca atgcggtaga gcaaggaatt ttacccatta ccatcgctat ttcgatttct
     3481 cgttcagacg atcaggaagt tcaaaaacaa ctcgcggaac tttacaccaa tggtacattg
     3541 aaaagcaccg atattgccaa aatacgtaac ctgatccacc gtagaaatct tgctggtaag
     3601 aaagccaata caggtatttc tggaagtatt agatcatcta tttataatcc caaaactgtg
     3661 gtgaatatct acaaagagga aacggaaaga cagaaaatga tgatcaagca agcggactat
     3721 gatgaaaaac aactctctat tatcttgtct tgcttaaata aactctttga ggacaaatac
     3781 tttcaactcg tccttaaatc agaacattta gacgatatgc caaaagattt aagccaacga
     3841 atgttaaaac aacgagaggg aaatatttat gcctaaacat attacttatg cctttcataa
     3901 tcagttaatt tcgcttccaa ttgatgagat tattccatta aaaaagatgg ataaaaattt
     3961 tgagaaaagc actaagttcc aaagcattct ggcttcaatt cgtgaaatcg ggattgttga
     4021 acctgtggtc gtctatccag aagaaaacaa ccaatatatt ttgttagatg gccattctcg
     4081 tgtacatgca ctcaaaaagc taggtgtgga taaggtgctt tgtatgattt ctaccgatga
     4141 tgaaggcttt acttacaaca agcaaattaa ccgcttaacc gccgttcagg aaaataaaat
     4201 gctgatgaaa accattgagc gcggggtttc ggatgaactg atcgcaagaa cactcaatat
     4261 caatctaaaa gcactacggc agaaaatgaa tatgcttaat gggatcacaa gagaggttgt
     4321 tgatatattg gccaataagc aggtcagtaa agagatattt cggattttgc gcaagatgaa
     4381 gcctgaacgc caaattgaag tggcacaaat gatgatcgcc agtaataagt ttacattgac
     4441 atacgccaat atgatgttgc tcagttcacg caaggaggaa ttagtcgaaa gccacaagtc
     4501 taaaaccacg aatgatgatt taaccgatct ttccattatg caaaaagagc tagagcgact
     4561 taaagagaac tataaaattt ccgaagagaa attggcggac ttaaaaatgg gattggttgt
     4621 ggcgaaaggg tatgtcaaaa aactattgaa taatgctgcc gtggtagatt tgcttgaaaa
     4681 tgatcagagt gaaatctatc ttactcttaa agaagtatgt gatattcaat aatataatat
     4741 ctagctaata accttaat
//
LOCUS       DANMBQ010000154         4740 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.155, whole genome shotgun sequence.
ACCESSION   DANMBQ010000154 DANMBQ010000000
VERSION     DANMBQ010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4740)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4740)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4740
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.155"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..382)
                     /locus_tag="PXE92_002362"
     CDS             complement(<1..382)
                     /locus_tag="PXE92_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5761557.1"
                     /translation="MPFYAGQVKCIFIDPPYNTKSAFTHYDDNLEHSIWLSMMYPRLE
                     ILRELLAEDGSIWITLDDNESHYLKIMLDEIFGRKNFISNLIWEKKRKPSFLGKVGKV
                     TDNLFCYAKNKNELNELNDLTYLET"
     gene            complement(421..522)
                     /locus_tag="PXE92_002363"
                     /pseudo
     CDS             complement(421..522)
                     /locus_tag="PXE92_002363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252355.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methylase N-4/N-6"
     gene            complement(535..732)
                     /locus_tag="PXE92_002364"
                     /pseudo
     CDS             complement(535..732)
                     /locus_tag="PXE92_002364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253436.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(887..3373)
                     /gene="torA"
                     /locus_tag="PXE92_002365"
     CDS             complement(887..3373)
                     /gene="torA"
                     /locus_tag="PXE92_002365"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL5761558.1"
                     /translation="MKKQDNIDVSRRGFLKNSSLSLAAGAGLASGTTGVVGALASTSA
                     KAAEMKTVVTAAHWGPLGVVVENGKVVKSDSVFEISVPNELQHVVADQVHGETRVKYP
                     MVRKGYLEGNKDTTLRGRDEWVRVSWDKAFELVANEMKRVREAHGANAIFGGSYGWYS
                     SGALHASRTLLQRYLNVTGGFVGVKGDYSTGAAQVIMPHVLGTIEVYEQQTSWEVILE
                     SSDIVVLWSANPLNTLRIAWTSTDQQGIEYFKKLKESGKRIICIDPVKSESCEFLGAE
                     WVPVNTGTDVALMLGMAHTLVAEGKHDQAFLKKYTTGFEKFEEYLLGKTDNQPKDAKW
                     ASQICGVPEETIKKLATDFQSKRTMLMAGWGIQRQRHGEQGHWMLVTLAAMLGQIGLP
                     GGGFGLSYHYSNGGVPSATGGILGSITANPAVEAGAKTWLDETSKSSFPVARISDALL
                     NPGKTIDYNGTQITYPDIKIVYWAGGNPFTHHQDTNTLVKAWQKPDTIIVNECHWTPT
                     ARMSDIVLPATTSYERNDLTMSGDYSMMNIFPMKQVVEPQFEAKNDYDIFAELAKRAG
                     KEAEFTEGKSEMDWLQSFYQTAFEAARKNRVIMPKFEKFWQENKPLSFKASDKAKKWV
                     RYEEFRNDPLLNPLGTPSGKIEIFSEVIAKMNYDDCKGHPTWMEHEEYSGKTTAEEPL
                     ALVTPHSKWRLHSQLAYSSLRKQYAVNDREPVLIHTEDAAARGITSGDIVRIFNKRGQ
                     VLAGAVVTDGIIKGTLALHEGAWYDPLDLGTSEQPLCKNGNPNVLTRDEGTSKLAQGN
                     SPNTATVQVEKFTGQAPEVTVFKEPKYTQG"
     regulatory      complement(3392..3588)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            complement(3592..4707)
                     /locus_tag="PXE92_002366"
     CDS             complement(3592..4707)
                     /locus_tag="PXE92_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL5761559.1"
                     /translation="MAKMKKIAVFVGIMALGAAVLGGTQYAMKATSSTEFCVSCHSMT
                     HPQAEWEGSVHFSNRKGIRAECSDCHLPQDGLHYVKAKIIALKDVWHTVVTNKLPDQE
                     AYEAHRLEMAQRVWAEMKENDSMTCKSCHSFDAMVLSEQTEAAQKMHKLAQETNQTCI
                     DCHKGIAHFMPDVPVDNAAAMGELAKHGAEFSTNDKTLYTLAMTPVQLAQGGEIRLLP
                     YAELHQWTAEGEQVKATVNGWQQEGAESVVYMDLGKRIMVALLPDDAQSKVNVTKTVF
                     DNVTNSNWKEINFEITAPKNAVTANITALNHFGDNLNQTHCSGCHAPIGAEHYTANQW
                     IGVVNSMKDRTSMSADDVRAVTIYLQRNAKDVAGSSH"
BASE COUNT         1215 a         1062 c          980 g         1483 t
ORIGIN      
        1 aggtctcaag gtaagttaag tcatttaatt catttaattc atttttgttt tttgcatagc
       61 aaaataaatt atctgtaact ttaccaactt tgcctaaaaa agatggtttc cttttctttt
      121 cccaaattaa gttagaaatg aaattcttcc gcccaaaaat ttcatcaagc ataattttca
      181 aatagtgact ttcgttatca tcaagagtga tccaaattga accatcttcg gcaagtaact
      241 ctcgcagaat ttcaaggcgt ggatacatca ttgaaagcca aatggaatgc tctaaattat
      301 catcgtagtg ggtaaaggcc gattttgtgt tatagggagg atcaataaaa atacatttga
      361 cttgccccgc ataaaagggc aaaagagatt ttaaggctga taaattatca ccctgaataa
      421 ttaaattttg cttgacttta gataaggttt cagcagaagc tgagctgtcg gctgtcggct
      481 gtcggctgtc ggctgtcggc tgtcggctgt cggctgtcgg ctgtcggctg tcggctgtcg
      541 gctgtcggct gtcggctgtc ggctgtcggc tgtcggctgt cggctgtcgg ctgtcggctg
      601 tcgggcaata ttatgcgaga agtccggcaa ctcacgcaat aggcaatatg gggtttgttt
      661 tgcttttttg acggcttctt ctttgccgta gtttgttttg cttttttgac ggcttcttct
      721 ttgccgtacc aagtaagggt tgtcataaaa tgcacctgaa aagtaaaagt ggattattgt
      781 aacaagcggt caaaaaaata gaaagtttta caaaaaatta agcaaattta accgcttgca
      841 acatagaaaa ggcacagttt tatactgtgc ctttggttat atgaaattag ccttgtgtgt
      901 atttaggctc tttaaatact gttacttctg gtgcttgtcc ggtgaatttt tcaacctgta
      961 ccgtagcggt atttggtgag ttaccctgtg ctaattttga tgtgccttca tcacgggtta
     1021 gcacgttagg gttgccgttt ttacatagcg gttgctcgct ggtgccgaga tcgagcggat
     1081 cgtaccaagc tccttcgtgc aaggctaatg tacctttgat aatgccatct gtcaccaccg
     1141 caccggctaa tacttgacca cgtttgttaa aaatacgtac aatatcaccg cttgtaatgc
     1201 cacgagcggc ggcatcttca gtatggatca acaccggctc acggtcatta accgcatatt
     1261 gtttgcgtaa tgatgagtaa gctaactggc tgtgtaaacg ccatttagag tgtggagtca
     1321 ccaatgccaa cggttcttct gcggtggttt tacccgagta ttcttcgtgt tccatccaag
     1381 ttgggtgacc tttacagtca tcataattca ttttggcaat cacctcagag aaaatctcaa
     1441 ttttgccgga cggtgtgcct aatggattta ggagtgggtc attacgaaat tcttcataac
     1501 gaacccattt tttcgctttg tctgatgctt taaaagaaag tggtttattc tcttgccaga
     1561 atttctcgaa tttcggcata atcacacgat ttttgcgtgc tgcctcaaat gcagtttgat
     1621 agaaactttg tagccaatcc atttcagatt tgccttcggt aaattccgct tctttgcctg
     1681 cacgtttggc tagttcggca aaaatatcgt agtcgttttt tgcctcaaat tgcggttcga
     1741 ccacctgttt catcgggaaa atattcatca ttgaataatc gcccgacata gttaagtcat
     1801 tacgctcata gctggtggtt gccggcagca cgatgtcaga catacgagcc gttggtgtcc
     1861 aatggcattc attgacgata atagtatccg gtttttgcca cgctttcacc aaagtgttgg
     1921 tgtcttggtg gtgggtaaac ggattacccc ctgcccaata gacaattttg atatcaggat
     1981 aagtaatttg tgtgccattg taatcaatgg ttttgcccgg gttgagcagt gcatcggaaa
     2041 tacgagccac cgggaatgaa gattttgatg tttcatctaa ccaggttttc gctccggctt
     2101 ctactgccgg atttgctgtg atagagccta aaatgccccc tgtggcactc ggcacgccgc
     2161 cgtttgagta atggtagctt aaaccgaaac caccacccgg taagccgatt tgacctaaca
     2221 ttgcagctag ggtgactaac atccaatgcc cttgttcacc gtgtcgttgg cgttgaatcc
     2281 cccagcctgc cattaacatt gtgcgtttag attggaaatc agtcgctaat tttttaatgg
     2341 tttcttccgg cacaccacaa atttgacttg cccattttgc atctttcggt tgattgtctg
     2401 ttttaccgag cagatattct tcaaacttct caaaaccggt ggtgtatttt ttaaggaatg
     2461 cttgatcgtg tttgccttca gcgactaagg tatgagccat accgagcatt aacgcaacat
     2521 cagtgccggt gtttaccggt acccattctg cacctaaaaa ttcgcaagat tcacttttta
     2581 ccgggtcaat acagataatg cgtttcccgc tctctttgag ttttttgaag tattcaatac
     2641 cttgttgatc ggtagaagtc cacgcaatgc gtagcgtatt taacgggtta gctgaccaaa
     2701 gcaccacaat atctgaactt tctaaaatca cttcccaact agtttgctgt tcgtacacct
     2761 cgattgtacc caagacgtgt ggcataatca cttgagcagc accggtagaa tagtcgcctt
     2821 ttacaccaac aaatccgccg gtaacattta aatagcgttg taacagtgta cgggaagcgt
     2881 gtaatgcccc agaactatac caaccgtaag aaccaccaaa aatagcattc gccccgtgag
     2941 cctcacgaac acgtttcatt tcattcgcaa ctaattcaaa tgccttatcc cacgaaactc
     3001 gcacccattc atcacgccca cgtagagtag tatctttatt accttctaag tagcctttac
     3061 gcaccattgg gtattttact cgtgtttcac cgtgtacttg gtctgctacc acgtgttgca
     3121 attcatttgg cacagaaatc tcaaaaacag aatcagattt caccactttg ccattttcta
     3181 ccactacacc taaaggcccc cagtgggcgg cagttactac tgttttcatc tcggctgctt
     3241 tggcactggt ggaagctaat gcccccacta caccggtagt accactggct aaacctgcac
     3301 cggcagctaa gcttaatgat gaatttttta gaaaaccgcg acgacttacg tcaatattgt
     3361 cttgtttttt cataataaac ctcgtttgaa gttaagttaa aaatagacac ctttctaaag
     3421 tcgagtggat aaaccatttc tcgtgtatcc attggtaaaa gcaccgacgg taatttttgc
     3481 aaaatgttag gaaaaaatga ccgcttgtag taggtgcttt acggcttgct accatatctc
     3541 tgctctcagc agacacttag gctcacaagc tcggtatcct ctaagttgca attaatggga
     3601 actgcctgct acatcttttg cattacgttg gagatagata gtcaccgcac gcacatcatc
     3661 agccgacata gatgttctgt ctttcattga atttaccacc ccaatccatt gatttgcggt
     3721 gtaatgttct gccccaatcg gtgcatggca accgctacag tgtgtttggt ttaagttatc
     3781 gccaaaatga tttagtgcag taatattggc agtgactgca tttttaggag cagtaatttc
     3841 aaaattgatt tctttccaat ttgagttggt gacattatca aacactgttt ttgtgacatt
     3901 cactttgctt tgagcgtcat caggtagaag agcaaccata atacgcttgc ctaaatccat
     3961 atacaccaca gattccgcac cttcttgttg ccagccatta accgttgctt taacctgctc
     4021 gccttctgct gtccattgat gtaattctgc ataaggtaac aagcgaattt ctccaccttg
     4081 agcgagctgc actggagtca ttgcgagcgt ataaagggtt ttatcatttg tgctaaattc
     4141 cgcaccgtgt ttagctaatt cgcccattgc tgcggcatta tctaccggca catcaggcat
     4201 aaaatgggca attcctttat ggcaatcaat acaggtttga ttagtttctt gggctagttt
     4261 gtgcattttc tgtgccgctt ctgtttgttc agaaagtacc atcgcatcaa aactatgaca
     4321 gcttttacag gtcatagaat cgttttcttt catttctgcc caaacacgtt gtgccatttc
     4381 tagacgatgg gcttcatagg cttcttgatc aggtaattta ttggttacaa cggtgtgcca
     4441 aacatctttt aatgcgatga ttttagcttt gacataatgc aagccgtctt gtggtagatg
     4501 gcaatccgaa cactcggctc gaattccctt acggttggaa aaatggacac tgccttccca
     4561 ctctgcctgt gggtgagtca tagaatggca gctcacacaa aattctgttg agctggtggc
     4621 tttcattgca tattgtgtgc cacctaatac cgcagcacct aatgccataa taccgacaaa
     4681 tacagcaatt tttttcatct tagccataaa ttaccccact taatacacta aaaattaaag
//
LOCUS       DANMBQ010000155         4681 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.156, whole genome shotgun sequence.
ACCESSION   DANMBQ010000155 DANMBQ010000000
VERSION     DANMBQ010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4681
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.156"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..516
                     /locus_tag="PXE92_002367"
     CDS             <1..516
                     /locus_tag="PXE92_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761560.1"
                     /translation="TYTGLISIYSSTFGSVNIESEIIKNGICLNFARQLISAKHPETK
                     KRISLHLKILDFDKGRNTYLAPADLFILDEHLNEFILGNGGDEIEKISKNNKTQFSST
                     IRENQINFIRALLYMDYGIETPQEVKNAINSGELGRKIEKFRRENPNIENDKNFKFPT
                     SVTLSNWYSKA"
     gene            594..845
                     /locus_tag="PXE92_002368"
     CDS             594..845
                     /locus_tag="PXE92_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5761561.1"
                     /translation="MQLQKTISTFTQPNHRGIYVMTYSEQSYLNVKDVCEMLQLNRST
                     IYRQIKQGIFPKPTKIGKSSRWKFADIKAFLEPKPQEAN"
     gene            845..1225
                     /locus_tag="PXE92_002369"
     CDS             845..1225
                     /locus_tag="PXE92_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5761562.1"
                     /translation="MAGLSIICPFCGNTARIRGSSRPSLLSYQAQLTCSNCGQLKADF
                     VGQLINIKRAVFIECDEANQWDKPENELIKEGKIQGKDNAQRLKELRGSQQDLFAKVP
                     GQLPPEKITPAEKIAKRANLSKTH"
     gene            1536..2597
                     /locus_tag="PXE92_002370"
     CDS             1536..2597
                     /locus_tag="PXE92_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ash family protein"
                     /protein_id="HDL5761563.1"
                     /translation="MKDLSPNQKQYTPFSAIMQKNLMDLLTKSARSPYSFSTVAKSTA
                     GRENPELHNTANSSTPLTRAIFIRSLHTPKERRNKACSSMVACSGQGSPLAVFGSPFV
                     AVFSPRYTLSPCTVRSVADSPLKLTNGLQKMNPSQITGKNRLNSFLFNNNQNDYSLLF
                     TNAKQSTPISAKISKNQDLCLTTLNRSPYASRAFAKSKAECGNSKEHQANNSTPLTRA
                     FFVRSSRTPKECQNKACSSMVACSGQGFALDCLPDVAVFHPVTRYRPTLWKMLAIAPK
                     NQHQELSKMKAFAYSFLCAIRTPETDTYQETVVRIISDSEQNARFQLTADYRLLLPRP
                     VAKIRLNSTAYTVKGGIYA"
     gene            2590..2754
                     /locus_tag="PXE92_002371"
     CDS             2590..2754
                     /locus_tag="PXE92_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761564.1"
                     /translation="MLNYSDIEQIRYFMDQAEEALDNNEEFKAVAELNTAQQFILALL
                     MNYEQGGENE"
     gene            2747..3382
                     /locus_tag="PXE92_002372"
     CDS             2747..3382
                     /locus_tag="PXE92_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761565.1"
                     /translation="MNNTTGQATQRNWQEIIANLQRLSESGESTIEIAKRYEAFSKTA
                     EQIQALVNNNGSEAEKEAFFAPVERFYLGLLETETRLKDAIAKDEENAQKLKEQKAAR
                     EAEQKRWDNLPFYAKDKFSDLICIESRETLEDKFFAISCMFDALKAVPNLLEIGLREE
                     GKDSVIDRLAEMSKLYLLFVDEQFSLLANEIQSGKYGKLDLNGSQNKGDLC"
     gene            3376..3594
                     /locus_tag="PXE92_002373"
     CDS             3376..3594
                     /locus_tag="PXE92_002373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761566.1"
                     /translation="MLTHRITLPDGTEIEFFAETDKETFAEIQRDLEGLKLPTFAEFV
                     AQERKKHRAKQAVKKARKIAKLARRKNR"
     gene            3736..4221
                     /locus_tag="PXE92_002374"
     CDS             3736..4221
                     /locus_tag="PXE92_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761567.1"
                     /translation="METALQLAQHLTGWTEEENSQAILKNFLDWKETFGEKTREETKI
                     VETLLDWINENEASFIEYPFNQEQRTPPKVAGYRILANNSTKTNEYFFIYPKQFKETL
                     AEFPLLMACTKLHEAGILHKPPRPEKGYEFQYTIAPKITGGSKKRAYKIVPIALEEEN
                     E"
BASE COUNT         1709 a          930 c          860 g         1182 t
ORIGIN      
        1 acttatactg gattaatttc tatttacagc agtacttttg gtagtgtaaa tattgaatct
       61 gaaatcatta aaaatggaat ttgtttaaat tttgcaagac aattaatatc agcaaagcac
      121 ccagaaacaa aaaaaagaat aagtttacat ctaaaaatac tggattttga caaaggcaga
      181 aatacttatt tagcacctgc agatttattt attcttgatg aacatctaaa tgagttcata
      241 ttaggtaacg gcggagatga aatagaaaaa atatcaaaga ataacaaaac tcaattcagc
      301 tcaacaatac gagaaaacca aatcaatttt attagagcct tgctttatat ggattatggg
      361 atagaaacgc ctcaagaagt aaaaaacgcc attaattcag gggaactagg cagaaaaata
      421 gagaaattta ggagagaaaa ccccaatata gagaacgata aaaatttcaa attccctaca
      481 agtgtaaccc ttagcaactg gtattcaaaa gcctaaaata ttggaaattt ccgaatctac
      541 tttggaaatt tccaaacttc taaaacctac tcacctcaca atctccccca acaatgcaac
      601 tacaaaagac aataagcaca ttcacgcaac caaaccacag ggggatttat gtaatgacct
      661 attcagaaca aagctattta aacgtgaaag atgtatgcga aatgctacaa ctcaaccgct
      721 caactattta tcgacaaatt aagcaaggga ttttccctaa gccaactaag atcggaaaat
      781 caagccggtg gaaatttgcc gacatcaaag catttttaga gccaaaacca caggaggcga
      841 actaatggca gggctttcta ttatttgccc gttttgtggc aataccgcac gaattagagg
      901 cagttctcgc cctagccttt taagttatca agcacagcta acttgttcaa attgcggaca
      961 attaaaagcc gactttgtag ggcagctaat caacatcaaa cgggccgtat ttattgagtg
     1021 tgatgaagca aatcaatggg ataaacccga aaatgaacta atcaaggagg gaaaaattca
     1081 aggcaaagac aatgctcaac gcctcaaaga actaagaggc tcacagcaag atttatttgc
     1141 aaaggtgccg gggcaactac cgcccgagaa gatcactccg gcggagaaaa tcgccaagcg
     1201 ggcaaacctt tcaaaaacgc attaaacagg gggataaatg gcaacaaaaa agccccgcaa
     1261 ggcaaaccat acggagctat taaaatcgca taatgcgaaa gatatgcaaa gaaattaaag
     1321 caggcttgac gatttctgaa ggtgttagat tctttctaaa gtctttaggg ataggtttat
     1381 ttctagcatt gtttttttat tttttgccgt atttagcaga atttataatc gccgtaaaaa
     1441 aacaactagc aaaaaaatcg gcttactttc aatgataaaa gcaagccgaa atgacaatcc
     1501 aaatttttaa ctttaaataa agagtacaag aagaaatgaa agatttatct ccaaatcaga
     1561 aacaatatac gccattttcg gctataatgc aaaaaaattt aatggattta ttgacaaaat
     1621 ccgcccgttc gccttattct ttctctaccg ttgcaaaatc aacggcaggg cgtgagaacc
     1681 ctgaactaca taatacggcg aacagtagca cgcctttaac ccgtgctatt tttattcgta
     1741 gcttacacac acctaaagaa cgccgaaata aggcgtgttc gtctatggta gcgtgtagcg
     1801 ggcaaggttc gcccttggct gtttttggtt cgccgtttgt agcagttttc tcaccccgtt
     1861 acacgctatc gccctgcacc gtgagaagtg tagccgatag tcctttaaaa ttaacaaacg
     1921 gactacaaaa aatgaaccct agccaaatta caggcaaaaa ccgcctaaac tcttttctat
     1981 ttaacaataa tcaaaatgat tattcgctat tatttactaa tgcaaaacaa tcaaccccga
     2041 tttctgctaa aataagcaaa aatcaagatt tatgcttgac aaccctcaat cgttcgcctt
     2101 atgctagccg tgcttttgca aaatcaaaag ccgagtgtgg aaactcgaaa gaacatcagg
     2161 cgaacaatag cacgccttta actcgtgctt tttttgttcg tagctcacgc acacccaaag
     2221 aatgccaaaa taaggcgtgt tcgtctatgg tagcgtgtag cgggcaaggt ttcgcccttg
     2281 actgcttacc tgatgttgca gttttccacc ccgttacacg ctatcgccct acattgtgga
     2341 aaatgttagc gatagcccct aaaaatcaac atcaggagct atcaaaaatg aaagcattcg
     2401 cttattcatt cctttgtgct attcgcacac ccgaaacaga tacttatcaa gaaaccgtag
     2461 tacgcattat ttcagacagc gaacaaaacg cccgttttca gcttacagcc gattatcgct
     2521 tactactccc ccgccctgtt gcaaaaatcc gcctaaattc taccgcttac acggtgaaag
     2581 gggggattta tgcttaatta ttccgatatt gaacaaatcc gctattttat ggatcaagcc
     2641 gaagaggctt tagacaataa tgaagagttc aaagccgtag cagaacttaa cacagcacaa
     2701 caatttattc tggctttatt aatgaactac gaacaagggg gtgaaaatga ataatacaac
     2761 aggacaagct acgcaaagaa actggcaaga aattatcgct aatttgcaga gactcagcga
     2821 atccggggaa agcacaatcg aaatcgctaa acgctatgag gcattttcta aaaccgccga
     2881 gcaaatccaa gccctagtga ataacaacgg cagcgaagcc gaaaaagagg cgttttttgc
     2941 ccctgttgag cgtttttatc ttggcttact agaaaccgaa acacgcttaa aagatgccat
     3001 agccaaagac gaagaaaacg cccaaaaatt gaaagagcaa aaagcagcta gagaggcaga
     3061 gcaaaaaaga tgggacaacc tacctttcta cgccaaagac aaattcagtg atttaatttg
     3121 cattgaaagc cgagaaacgc ttgaagataa attctttgcg atctcttgta tgttcgatgc
     3181 cctaaaagcc gtacctaatc tattagaaat aggcttgcgt gaagaaggca aagacagtgt
     3241 tatagaccga ttagccgaaa tgagcaaact ctatttactg tttgtagatg agcaattttc
     3301 actactggca aacgaaattc aaagcggtaa atatggcaag ttagacctaa acggctcaca
     3361 gaataagggg gatttatgct aacgcaccgc attacactcc ctgacggcac agaaattgaa
     3421 ttttttgcag aaaccgacaa agaaacattt gcagaaattc aaagggactt agagggcttg
     3481 aaattgccaa cctttgccga gtttgttgcc caagagcgga aaaaacaccg agcaaaacaa
     3541 gcggtcaaaa aagcccgaaa aattgcaaaa ttagcaagac ggaaaaaccg ctagcaccta
     3601 tcaaaaagac ttattattgc agaaaatcac gctttaataa aaacgaccta taaagcaatc
     3661 cgcaagaaat ggttaagttt aactgaaaat atgagcggac aggttcagcg ggtagcgtgc
     3721 gatagattcg caataatgga aaccgccttg cagttagccc aacatttaac aggctggaca
     3781 gaggaagaga acagccaagc gattttaaaa aacttcctag actggaaaga aactttcggc
     3841 gaaaaaacaa gagaagaaac taaaatagta gaaaccttgc tagattggat aaatgaaaat
     3901 gaggcgagtt ttatcgagta cccattcaac caagagcaaa gaacaccgcc taaagttgcc
     3961 ggctatagaa tacttgcgaa taacagcact aaaacaaatg agtacttttt catttaccct
     4021 aagcaattta aagaaacgct ggcagaattt ccgctattga tggcttgcac caagttacac
     4081 gaggcaggga ttttacataa gccaccacgc ccagaaaaag gctatgaatt tcagtacaca
     4141 atagccccta aaataacagg agggagcaaa aaaagagctt ataaaatcgt accgatagca
     4201 ttggaagaag aaaacgagta attacagcaa aagcaagagt ttcaattctt gcttttttta
     4261 tacttcaaac aaaataaaaa taaatacaaa ttaaaaattt atagggaaaa tagggaaaaa
     4321 ataagaagaa tatagatata tcaaggtttt atagattttt attttcccta ttttatataa
     4381 aattttccct aaatcttcct attttttccc tatttatgcc tattttttcc ctaaagctaa
     4441 aatattgact tttcccctac acaaggcaaa aacagaaaaa tagggaaaga aaatccaaaa
     4501 aatagggaaa attcggggca ttttagggaa agtggaattt tttaactatt tgatattatt
     4561 atgttttttg taaattttcc ctattttccc tattttccct aaacatttta cccaagcaca
     4621 gaaaaaatat ttttatgctg atgtatgaaa aatgaaatct tgctgaaggg ctgaatagtt
     4681 g
//
LOCUS       DANMBQ010000156         4657 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.157, whole genome shotgun sequence.
ACCESSION   DANMBQ010000156 DANMBQ010000000
VERSION     DANMBQ010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.157"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(191..532)
                     /locus_tag="PXE92_002375"
     CDS             complement(191..532)
                     /locus_tag="PXE92_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease domain-containing protein"
                     /protein_id="HDL5761568.1"
                     /translation="MKAILCQRAKQLRTNMTEAEKVLWQALRAKRFLAIKFKRQQVIG
                     NYIVDFVCFSAKLVIELDGSQHLDQQNYDNLRTHFLNGQGFRVLRFWNNQIHSDLEAV
                     LDTIFYEITRG"
     gene            complement(680..1312)
                     /locus_tag="PXE92_002376"
     CDS             complement(680..1312)
                     /locus_tag="PXE92_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2625 family protein"
                     /protein_id="HDL5761569.1"
                     /translation="MKNLEQLLDKQSAWLILRDWFTQAKNHYEILASYPEDAGSALVG
                     MQLSTRSPLGAMVYETGGVFIDHGWLRILGSGNEKLPRGLFDWNFGKTFKQSGEQPSH
                     LLVADDAIGGYFAINAGGIGSDLGKVYYYHPKAKKWENTQLGYSEFLGWALAGDLNHF
                     YQDLRWENWQTDVEKLQGHQVLDLTSKIAVPIERHYQGEFAPENMGYSVA"
     gene            complement(1366..1887)
                     /gene="hscB"
                     /locus_tag="PXE92_002377"
     CDS             complement(1366..1887)
                     /gene="hscB"
                     /locus_tag="PXE92_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HDL5761570.1"
                     /translation="MNNPFTLFDLPVQFQLDNAQLSERYLALQKQLHPDNFAHKSSAE
                     QLEAVQKSADVNEALNILKDPILRAEAMIEIHTGEAKNLEEKSMRDVDFLMQQLEWHE
                     KLETIEHRKDETELTVFLKQIKAEQKAVLEQLEQTLNTADWQKANALTDKLRYFKKLI
                     IQIEKVEEKFFDY"
     gene            complement(1897..2220)
                     /gene="iscA"
                     /locus_tag="PXE92_002378"
     CDS             complement(1897..2220)
                     /gene="iscA"
                     /locus_tag="PXE92_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HDL5761571.1"
                     /translation="MSITLTEAAANRVRTFLENRGKGIGLRLGVKTSGCSGLAYVLEF
                     VDVLNEDDQVFEQHGVKVIVDEKSLTYLNGTQLDFVKEGLNEGFKYTNPNVKNECGCG
                     ESFSV"
     gene            complement(2329..2712)
                     /gene="iscU"
                     /locus_tag="PXE92_002379"
     CDS             complement(2329..2712)
                     /gene="iscU"
                     /locus_tag="PXE92_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HDL5761572.1"
                     /translation="MAYSEKVIDHYENPRNVGTFDKEASDTGTGMVGAPACGDILRLQ
                     IKVNDQGIIEDARFKAYGCGSAIASSSLITEWVKGKSLEEAGAIKNSDIAEELELPPV
                     KVHCSILAEDAIKAAIADYKEKQAK"
     gene            complement(2839..4059)
                     /locus_tag="PXE92_002380"
     CDS             complement(2839..4059)
                     /locus_tag="PXE92_002380"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HDL5761573.1"
                     /translation="MKLPIYLDYAATTPMDERVAKKMMEYMTKDGIFGNPASRSHKFG
                     WEAEEAVDVARNQIADLIGADSREIVFTSGATESDNLAIKGAAHFYQTKGKHIITVKT
                     EHKAVLDTCRQLEREGFEVTYLDPEEDGILDLAKLKAAIRPDTILVSVMHVNNEMGVI
                     QPIKEIGAICRAKKIIFHVDATQSVGKIEVNVQDLNVDLMSFSSHKLYGPKGIGGLYV
                     CRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMARLTVLRDR
                     LYNGFKDIEEVYVNGSMEEGKRIGSNLNISFNFVEGESLMMSLRDIAVSSGSACTSAS
                     LEPSYVLRAIGRDDELAHSSIRFTLGRWTTEEEIDHTIEIVKKAIVKLRELSPLWEMF
                     KEGVDLSKIEWNHH"
     gene            complement(4114..4566)
                     /gene="iscR"
                     /locus_tag="PXE92_002381"
     CDS             complement(4114..4566)
                     /gene="iscR"
                     /locus_tag="PXE92_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HDL5761574.1"
                     /translation="MKLTSKGRYAVTAILDIALHGKLEPVSLADISDRQAISLSYLEQ
                     LFAQLRRDGIVQSVRGPGGGYQLGKKPEEISVGMIISAVNENIDVTKCKGSGNCRKDS
                     QCLTHSLWERLEDQIEQFLGTISVADLAAEHADHDCEKEHCHDHPHHH"
BASE COUNT         1335 a         1001 c          803 g         1518 t
ORIGIN      
        1 cctctcccac aaggggagag ggttattctt tcaaaaattc aaaacaacta aaaaattagc
       61 attctccttt tgtaggagaa aatgttgttc tttcaaaatt ctaaaataac cgcaaaatta
      121 actctcgccc cttgtgggag agagacagat aaatcattcg ttcagaatga tttatcagag
      181 agaggggaaa ttaccctctc gtaatttcat aaaaaattgt atctaaaaca gcctctagat
      241 cgctatgaat ttgattattc caaaatctta aaaccctgaa cccctgaccg tttaaaaaat
      301 gagttcgtag attatcatag ttttgttgat ctaaatgttg tgaaccatct aattcaataa
      361 ctaatttcgc tgaaaagcaa acaaaatcga caatatagtt acctataact tgttgccgtt
      421 taaattttat cgctaaaaat cgttttgctc ttaatgcttg ccaaagaacc ttctctgctt
      481 ctgtcatatt agtccgaagc tgtttagctc tttggcataa aattgctttc attttttatt
      541 cctctttttt aatttagtat aaaaggaata aaaaatataa tttgagcgat ttttgtgatc
      601 taaatcgaaa atcagaaaat ttctttcgtt ctaaaaaaat aagctaaaca gcctatattt
      661 cagcctctct tacaaacact taagccaccg aatatcccat attttcaggg gcaaattcgc
      721 cttggtagtg gcgttcaatc ggaacggcga ttttacttgt aagatccagc acttgatgcc
      781 cttgtaattt ctctacatcg gtttgccagt tttcccaacg caaatcctga taaaaatggt
      841 ttaaatctcc ggctaatgcc cagcctagaa attctgaata acctaattgg gtgttttccc
      901 attttttagc ttttggatga taataataaa ctttgccaag atctgagccg attccgccgg
      961 cattaatggc aaaatagcca ccgattgcat catccgctac cagcaagtgg cttggttgtt
     1021 cgccagattg tttaaaagtt ttgccaaagt tccaatcaaa taagcctcga ggcaattttt
     1081 cgttgcctga gcctaaaatg cgtaaccaac cgtggtcaat aaatacgcca ccggtttcat
     1141 acaccattgc ccctagcggt gagcgagtag aaagttgcat accaaccaat gcactgccgg
     1201 catcttcagg gtaactcgct aaaatttcgt aatgattttt ggcttgggta aaccagtctc
     1261 ttaaaattaa ccaagccgat tgtttatcta ataattgttc taaatttttc atttgcaaaa
     1321 tttccttaga atttgaccgc ttgcgaaaac catacaaatg taggattaat agtcaaagaa
     1381 tttttcttct actttctcaa tctgaataat taatttttta aagtaacgga gcttgtcggt
     1441 taacgcattg gctttttgcc agtcggctgt atttaacgtt tgttcaagct gttctaatac
     1501 tgctttttgt tccgctttaa tctgttttaa aaagacggtc agttcggttt cgtctttacg
     1561 atgctcaatg gtttccagtt tttcgtgcca ttcgagttgc tgcattaaga aatccacatc
     1621 tcgcatactt ttttcttcga gatttttggc ttcacctgta tggatttcaa tcatcgcttc
     1681 tgcccgtaaa atcggatctt taagaatatt gagtgcctca ttgacatcag cagatttttg
     1741 caccgcttct aactgttcag cacttgattt gtgggcaaag ttatctgggt gaagctgttt
     1801 ctgtaaagca agataacgct cagaaagctg ggcgttatca agttgaaatt gaacgggtaa
     1861 atcaaataaa gtaaaagggt tattcattac agttccttac acactaaaac tttcgccaca
     1921 gccgcattcg tttttaacat tcgggttggt gtatttaaag ccttcgttta agccttcttt
     1981 cacaaaatcc agctgcgtac cgtttaagta agtcaggctt ttttcatcga caataacttt
     2041 tacgccgtgt tgttcgaaaa cctgatcgtc ttcatttaat acatcaacaa attcaagcac
     2101 ataggcaagc cccgaacaac cggaagtttt cacaccaagc cttagcccga tacctttacc
     2161 tctgttttct aagaatgtac gaactcggtt tgcggcagct tctgttaagg taatgctcat
     2221 agttttcctt atgtgaatgg attaaatcaa gatagaaata gcaaatgcaa gcggttaaat
     2281 tttgcaaatt ttttgcaaaa atcgaccgct tgcattgatt gtatcatatt acttagcttg
     2341 tttctctttg tagtctgcaa ttgcagcttt gattgcatct tctgctaaga ttgaacagtg
     2401 aacttttacc ggtggtaatt ctaactcttc agcgatatca ctgtttttaa tcgcacctgc
     2461 ttcctctaat gatttacctt ttacccattc ggtaatgaga gaacttgatg cgattgcaga
     2521 accacaaccg tatgctttaa agcgtgcatc ttcaatgata ccttgatcgt tcactttaat
     2581 ttgtaaacgt aaaatatcac cacaagccgg tgctcccacc atacctgtac cggtgtctga
     2641 tgcttcttta tcaaaagtcc ctacgttgcg tgggttttcg taatgatcaa ttactttttc
     2701 gctatatgcc atttttgtat tccttttatt tcctatttcc ggcgaaacct atttcgcccc
     2761 tacattcaat ttactatttg tgatgaaagc ttattttgta ggggcaaata ttatttgccc
     2821 ttgcaaaatt tttctgaatt agtggtgatt ccattcgatt ttagacaaat ctacaccttc
     2881 tttgaacatt tcccaaagag gcgaaagctc acgcaatttc acgatagctt ttttcacgat
     2941 ttcaatagta tgatcgattt cttcttcagt cgtccaacga cctaaagtga aacggattga
     3001 gctgtgagct aattcatcgt cacgaccgat tgcacgtaac acataagatg gctctaaact
     3061 tgcagaagta caagctgaac ctgatgatac tgcgatatca cgtaatgaca tcattaacga
     3121 ttcgccctca acaaagttaa agctgatgtt taggtttgaa ccgatacgtt tgccttcttc
     3181 cattgaaccg tttacatata cttcttcaat atctttaaag ccgttatata aacgatcacg
     3241 taacacggtt aaacgagcca tttccgttgc catttcttct ttagcgatac gatatgcttc
     3301 acccatacct acaatttggt gaacaggcaa tgtacccgaa cgcataccac gctcgtgacc
     3361 gccaccgtga ataattgctt ctaaacgcac acgtggttta cgacaaacat atagaccgcc
     3421 gatacctttt ggtccgtata atttgtggct tgagaaagac attaaatcaa catttaagtc
     3481 ttgtacattc acttcgattt taccaacaga ctgggtcgca tcaacgtgga aaatgatttt
     3541 cttcgcacgg cagattgcac cgatctcttt aatcggttgg attacgccca tttcgttatt
     3601 tacgtgcatt accgaaacta aaattgtgtc cggacgaata gccgctttta atttagctaa
     3661 atctaaaata ccgtcttctt cagggtctaa gtaagtcact tcaaaacctt cacgctctaa
     3721 ctgacggcaa gtatctaata ctgctttatg ttcggtttta acagtgataa tgtgtttacc
     3781 tttggtttga tagaaatgag ccgcaccttt gatggctaag ttatccgact ctgttgcacc
     3841 agaagtgaaa acgatttcac ggctgtctgc accgattaaa tcggcaattt ggttacgagc
     3901 cacatcaacc gcttcttccg cttcccaacc aaatttgtgt gagcgagaag cagggttacc
     3961 aaagataccg tctttggtca tatattccat catttttttc gcaacacgtt cgtccattgg
     4021 tgtggttgct gcgtaatcca aataaattgg taatttcatt gttactccta gttaaaacaa
     4081 cccaagcggt catttttgat aaaaaatttg caattagtga tgatgaggat gatcgtgaca
     4141 atgctctttt tcacaatcgt gatcagcgtg ttctgcggct aaatccgcaa ctgaaattgt
     4201 ccctaaaaac tgctcaattt gatcttctaa ccgctcccac aaagaatgcg ttaaacactg
     4261 agaatcttta cggcaattac cactaccttt acatttggtg acatcaatat tttcattcac
     4321 ggcggagatg atcataccca cgctaatctc ttccggtttt ttacctaatt gatacccacc
     4381 acccggtcca cgaacgctct gcacgatacc gtcacggcga agttgagcaa acagttgctc
     4441 taaataagac agtgaaatcg cttggcgatc tgaaatatcg gctaagctaa ccggctctag
     4501 ttttccgtgt aaagcaatat ctaaaatggc ggttactgca taacgccctt ttgaggtaag
     4561 cttcataaaa tatcctcatt gattatccag aaaatcttct gaaacagttg ctaaattttg
     4621 atatacccca ccaatttagt caatcattta ggactaa
//
LOCUS       DANMBQ010000157         4576 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.158, whole genome shotgun sequence.
ACCESSION   DANMBQ010000157 DANMBQ010000000
VERSION     DANMBQ010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4576)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4576)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4576
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.158"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..316
                     /gene="secG"
                     /locus_tag="PXE92_002382"
     CDS             <1..316
                     /gene="secG"
                     /locus_tag="PXE92_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDL5761575.1"
                     /translation="VLTIVYLVVAVLLIAFVLMQQGKGADAGASFGAGASATVFGSAG
                     SANFLSRTTALLATIFFAISLVIGNLSSHNVAPKSQFEDLSQVEQKQVEPVKIENSDI
                     PQ"
     gene            341..426
                     /locus_tag="PXE92_002383"
     tRNA            341..426
                     /locus_tag="PXE92_002383"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:375..377,aa:Leu,seq:gag)
     gene            629..1870
                     /locus_tag="PXE92_002384"
     CDS             629..1870
                     /locus_tag="PXE92_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5761576.1"
                     /translation="MARTTKALNKTQIENAKSKDKEYILSDGDGLNLRVKPLPKGSKI
                     WIFNYTNPQTKNRTNLTIGRYPLITLAEARTICDGYRSLIEKGIDPQEEKKRLQQEAE
                     NRVNDTFRNVAESYFNGIYKEKAKNPITREKNWIRLENHIFPYIGDKHVEEIKVKALV
                     DIYSKVADKSNTLKKLHQLVSAVMDHAITQGIIESHNCRLAVKNFYIKPSTPNPTIEL
                     EELPQLFTDLHNAKLSKQTYALVCWSFLTALRPNEAVNAEWKEIDFEKKLWNIPKEKM
                     KGKADKKRPHSVPLSSQALKILEMMKMHSNSSPFVFPGRSSNSKPMSNATVNSTLKRN
                     GYKDRLTAHGIRAFVKTFLSSRKVDRHVSESILSHLLEGGDDLENTYNRYDFLEERVP
                     VMQLLGDYCEQCGMNLELVRG"
     gene            complement(2029..3897)
                     /locus_tag="PXE92_002385"
     CDS             complement(2029..3897)
                     /locus_tag="PXE92_002385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HDL5761577.1"
                     /translation="MFKKLLELRQQKAAIEAEMRSILTKADEEKRSTTEAEGAKFDEL
                     RSQAENLVKEIARYEAITDEQRNQPGQQVETANVKVSDDELRHWIKTGELRSLATNTN
                     GGADGGYSVIPELDKQVMKRLTDDSVMRQIANVVKLTQGKEYKKLVSAGGAAVNHIGE
                     GEARTETATPKMNEVTIAVHNIYAYPKTTQEILDFGGVDILGWLTEEISESFVETEET
                     DLTNGTGTKQAKGFLAYPRTTANDKTRPFGTLQKMEVQPATVIGWNSKGQPETLTPYP
                     PYSVNVQRTVNRQNWLTAYIPHSYDENVAETPHFDQWLNFVSDGKQDKAKNILAALYA
                     ILTNRYNWQVFFQVTGKGGSGKSVFAGIATLLAGEKNTASARLENFDDERKIAGLEDK
                     KLIICSEQTKYAGDGGGLKAITGGDMVRVDPKNKHPFNARIAAMIMIVNNDPCKWTER
                     NGGIDRRIVNFRFNKRPPENERDPYFMDKITLEIGGIIRKVLDTFPDPLEAKRALEEQ
                     KESLEALEIKKQSDPLTDFFEYLYTTENTDGLYIGTGNTLGHDKIRTHLYPAYLAFVK
                     AKNVLELGLNTFVVGIEQAVKQHGNKHDFTKRKTNKGQRTNVHFKNFDDFQSDILN"
     gene            complement(3908..4303)
                     /locus_tag="PXE92_002386"
     CDS             complement(3908..4303)
                     /locus_tag="PXE92_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761578.1"
                     /translation="MISNEAIRQEVIDLLQGNIQGIQHFHNGRAVFTDVENELPAIAV
                     FIDEAEYSQLTLCDGECNAYLKIGIYLPMFSTENDLDLVAQKISDVMNQATFHSMDEC
                     VLAKYSYDYDANESAWKTATLHYNINYLN"
BASE COUNT         1338 a          908 c          887 g         1443 t
ORIGIN      
        1 tgtactcact attgtttatc ttgtagttgc cgtattactg atcgcatttg tattaatgca
       61 acaaggtaaa ggcgctgatg caggtgcttc tttcggggcg ggtgcttcag caacagtttt
      121 cggctcagca ggatcagcaa attttttatc aagaacaact gctctacttg caacgatttt
      181 cttcgcaatt agtttagtta tcggtaattt aagctcacac aatgtagcac cgaaaagcca
      241 atttgaagac ttaagccaag ttgaacaaaa gcaagtagaa cctgtaaaaa tagaaaatag
      301 cgatatccct caataatcgc ttaacattaa aaagaataaa gctctggtgg tggaattggt
      361 agacacgcca tcttgagggg gtggtggaca cagtccgtgc gagttcaagt ctcgcccaga
      421 gcaccattca actaaatttg gctcaacgga gctaaactaa aaaagcctta gaaagcctgt
      481 aaaatcaaca tttacaggct tttttactat cttaactcaa cggctctaaa cgtttcctat
      541 cacaaatttt agttacacgt ttagttacac gttttaaatc gtgttactat actttcaata
      601 atcgtgtaac acttcgtagg tttaatttat ggctagaaca actaaagcat taaataaaac
      661 tcaaatagaa aatgccaaat caaaggataa agaatatatt ttatccgatg gcgatggatt
      721 aaatcttaga gttaaacctc tccctaaagg ctctaaaatt tggattttta actacactaa
      781 cccacaaact aaaaacagaa caaatttaac tattgggcgt taccccttaa ttacacttgc
      841 ggaagctcgc actatatgtg atggctaccg ctcgttaata gagaaaggca tagatccaca
      901 ggaagaaaaa aagcggctgc aacaagaagc agaaaatcga gtaaatgata ctttccggaa
      961 tgtggccgaa agctatttca atggtattta taaagagaaa gcaaaaaatc cgattactcg
     1021 tgaaaagaat tggataaggt tagaaaatca tattttcccc tatatcgggg ataaacacgt
     1081 tgaagaaatc aaagtaaaag cccttgttga tatttattct aaagtggcag ataaaagcaa
     1141 cacattaaaa aaactgcatc agcttgtatc tgctgtaatg gatcacgcca ttacgcaagg
     1201 cattatagaa agccataact gccgattagc agttaaaaac ttttatatca agccatctac
     1261 gccaaatccc actattgagc ttgaagaatt accgcagtta tttactgatt tacataatgc
     1321 gaagttatca aagcaaactt acgcccttgt ttgttggtcg ttcttgactg ctctacgccc
     1381 aaatgaagcc gttaatgctg aatggaaaga aatagacttt gagaaaaagc tatggaatat
     1441 ccctaaagag aagatgaaag gaaaagcaga taaaaaacgc cctcactctg tgccgttatc
     1501 ctcccaagcg ttaaagatat tagagatgat gaaaatgcac tctaattcta gcccttttgt
     1561 ttttccaggt cgttcatcaa atagtaaacc aatgagcaac gcaacggtaa attcaacatt
     1621 aaaaaggaat ggatataaag atagactaac cgcacacggt attcgggcat ttgtgaaaac
     1681 atttctatct tctcgcaaag tagatcgcca cgtttccgaa agtatattat cccatttatt
     1741 agaaggtgga gatgatttag aaaacacata caaccgatat gattttttag aagagcgtgt
     1801 gccagtaatg cagcttttag gtgattattg cgaacagtgc ggaatgaatt tagagttagt
     1861 tcggggttag ggaggtaaaa tatatgattt tagtcgtcac gtcatcactt ttcccacttt
     1921 cccctttaaa atcaaatagt taagtggtga tgactggttt taaagtcatc attaagtcat
     1981 cacaaaaagg tgatgaccta gaaaaaaaga ggggtttccc cctctttgct aattcaaaat
     2041 atcactttga aagtcatcaa aatttttgaa atgaacgttt gttcgttgcc ctttattcgt
     2101 ctttcgtttt gtgaaatcgt gcttattgcc gtgttgcttt actgcttgct caatacctac
     2161 tacaaaagta tttaagccta gttctagcac attcttagcc ttaacaaagg ctaaatatgc
     2221 cggataaagg tgcgttctta ttttgtcgtg tccaagcgtg ttgccagttc cgatataaag
     2281 cccgtctgta ttttctgttg tatatagata ctcgaaaaaa tccgttaatg ggtcagactg
     2341 ctttttaatc tccaacgcct ctaggctctc tttttgctcc tctaaggctc ttttagcttc
     2401 gagtgggtca gggaaggtat caagcacttt acggataatg ccccctatct ctaatgtaat
     2461 tttatccata aaatacggat cacgttcatt ttcaggcggt cttttattaa aacggaaatt
     2521 gacaatccgc ctatctatac cgccattccg ttctgtccat ttacaagggt cgttattgac
     2581 gatcataatc attgccgcaa ttcttgcgtt aaatgggtgc ttgttcttcg gatcgactcg
     2641 caccatatca ccgccagtaa tcgctttcaa tccgccacca tctccagcgt atttcgtttg
     2701 ctcggaacag ataatcagct ttttatcttc cagccctgcg attttgcgtt catcatcaaa
     2761 gttttctagc cttgctgaag ctgtgttctt ttctccagct aatagtgtcg caatgccagc
     2821 aaataccgat ttaccgcttc cgcctttccc tgttacttgg aagaatactt gccagttgta
     2881 gcggtttgtt aaaatcgcat agagagcggc tagaatgttc ttcgccttgt cttgcttgcc
     2941 gtctgataca aagttaagcc attgatcaaa gtgtggtgtt tcggctacgt tctcgtcata
     3001 gctatgtgga atataagccg ttagccagtt ttggcggtta acggttcttt gaacatttac
     3061 cgaataaggt gggtaagggg ttaaagtttc gggttgcccc ttgctattcc aaccaatcac
     3121 cgtagccggt tgtacttcca ttttttgaag cgtgccgaat ggtcgggttt tatcgttggc
     3181 tgtcgtgcgt ggataagcta agaagccttt agcttgtttt gtgcctgtac cgttggttaa
     3241 atcggtttct tcagtttcga caaaggattc tgaaatttct tcagtcagcc agcctagaat
     3301 atctacacca ccaaagtcta aaatctcttg cgtggttttc gggtaagcgt aaatattatg
     3361 aacggcaatc gttacttcat tcattttcgg ggtggcggtt tcggtgcgtg cttcgccttc
     3421 accgatatga tttaccgctg caccgccagc cgatactaat tttttatatt ctttgccttg
     3481 ggtcagtttc accacgttag caatttgtcg cataacagaa tcatctgtta ggcgtttcat
     3541 tacttgcttg tcaagttccg gaatcactga atagccaccg tctgcccctc catttgtatt
     3601 cgtagcaagc gaacgcaatt cgcctgtttt aatccagtgg cgaagctcgt catcagatac
     3661 tttcacattt gcggtttcaa cctgttgccc cggttggtta cgctgttcat cagtaatcgc
     3721 ttcataacgt gcgatttctt ttactaaatt ttcagcttgt gagcggagtt catcaaactt
     3781 agccccttct gcttcagttg ttgagcgttt ttcttcgtct gctttggtta aaattgaacg
     3841 catttctgct tcaatagccg ctttttgttg gcggagttct aaaagttttt taaacattgc
     3901 cttatcctta attcaaataa ttgatattgt agtgaagcgt tgctgttttc cacgctgatt
     3961 cgttagcatc ataatcatag ctatacttag ccagcacaca ttcgtccata ctgtggaatg
     4021 tggcttgatt catcacatca ctgatttttt gagccactaa atctaggtcg ttttcggttg
     4081 aaaacattgg taagtaaatg ccgattttca aataggcgtt gcattcgcca tcgcaaagcg
     4141 tgagttggct atattccgct tcatcaatga atacggcgat agccggtaat tcattttcta
     4201 catcggtgaa tacggctcgg ccgttatgga aatgttgaat gccttgaatg ttaccttgta
     4261 ataagtcgat aacttcttgg cggattgctt cgttagaaat cataaaaaag tcctcttaat
     4321 taagaaggct acaattagcc acagaacaat ataggcataa tttcaacgga gtaaataggg
     4381 taaaatttaa tcgtttagct acgtttgaac acgttaagag gataattttt aaatgattat
     4441 tttttattca acaaaagaca aaatggaagg aaataaacga ataattttat agaagtgatg
     4501 actgtgacta cttagtgacg acttaaaaat aagtagtcac tatattaata tgttgatata
     4561 taagggattt ttctat
//
LOCUS       DANMBQ010000158         4550 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.159, whole genome shotgun sequence.
ACCESSION   DANMBQ010000158 DANMBQ010000000
VERSION     DANMBQ010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4550
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.159"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            130..4026
                     /gene="purL"
                     /locus_tag="PXE92_002387"
                     /gene_synonym="purI"
     CDS             130..4026
                     /gene="purL"
                     /locus_tag="PXE92_002387"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HDL5761579.1"
                     /translation="MTIQTFRGSPALSAFRIQQLLQKFQQNQLPVKSVYAEFLHFVAL
                     NRPLVADEENKIKELLHYGPTLEEDEPTGFCLIVTPRIGTISSWSSKATDIAHNCGLA
                     AVERIERGTAYYLEFSETPNESQLTTLKGLLHDRMMETVLDNESQAEQLFAQQEPKPF
                     TSVDILGGGRKALEEANINLGLALADDEIDYLVENFTQLGRNPNDIELYMFAQANSEH
                     CRHKIFNADWTIDGVKQEKSLFKMIKNTFEKTPDYVLSAYKDNAAVMEGSTVGRFFPD
                     QDGQYRYHQEDAHILMKVETHNHPTAISPFPGAATGSGGEIRDEGATGRGAKPKAGLT
                     GFSVSNLVIPKFEQPWENPLSKPNRIASALDIMIDGPLGGAAFNNEFGRPALLGYFRT
                     YEEKVNSFAGEEIRGYHKPIMLAGGIGNIRAEHVQKGEIPVGAKLIVLGGPAMNIGLG
                     GGAASSMASGKSKEDLDFASVQRENPEMERRCQEVIDRCWQMGAENPILFIHDVGAGG
                     LSNAMPELVHDGECGGKFDLRNILCDEKGMSPLEIWCNESQERYVLAVSPEKLDIFTA
                     LCERERAPFAVIGEATKEKHLTLADPHFDNKPIDLPMNVLLGKTPKMQRDVLSKTVKN
                     PPLATADIDLKEAFHRVLRLPAVAEKTFLITIGDRSVTGMVAQDQMVGPWQIPVADCA
                     VTTASLDSYHGEAMSIGERSPVALLDFAASARLAVAESITNIAATNIGDIKRIKLSAN
                     WMSAAGHEGEDAGLYEAVKAVGEELCPELGITIPVGKDSMSMKTTWEENGEQKSVTAP
                     LSLVISAFARVEDVRKTVTPQLRTDKGDTRLLLIDLGEGNNRLGATALAQVYKQLGDK
                     PADVVNVARLKGFFNAMQTLVAQGKLLAYHDRSDGGLITTLAEMAFAGNCGISVEIDR
                     LVDDLAVLFNEELGAVIQVRTEELSEVQAVLNAENLANLTFDIGTAVESDSFEITRNG
                     TTVFSQKRSELRGIWAELTHQMQRLRDNPECADQEFAAKKDPNNKGLSAFLTYDVNED
                     IAAPYINKGVKPSVAILREQGVNSHYEMAAVFDRAGFNAIDVHMSDLISGRRNLNDFN
                     AMVACGGFSYGDVLGAGGGWAKSILFNPMLRDQFSKFFANPNTLALGVCNGCQMVSNL
                     AEIIPGTENWPRFVRNKSERFEARAAMVKINDTNSLWFNGMAGSHMPIAVSHGEGQVE
                     FKNPQQLANLQQQNLVIAQYVDSHLNPTEQYPANPNGSALGITAIGNTDGRVAIMMPH
                     PERVFRAVSNSWCPEDWTEGGAWMRLFRNARVALKY"
     gene            4381..4550
                     /locus_tag="PXE92_002388"
                     /pseudo
     CDS             4381..4550
                     /locus_tag="PXE92_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
BASE COUNT         1277 a         1031 c         1120 g         1122 t
ORIGIN      
        1 attgaacaaa tttatttgat actaatgaat aaatgtatct aacagcaaac gtctgacaaa
       61 tatagcaatc gtttgcgcaa tcgtttataa tcggtttagt ttttcatctt aaataggaaa
      121 atccaaagaa tgacaatcca aaccttccgt ggctcgcctg ccttatctgc ttttcgcatt
      181 caacaacttc tgcaaaaatt ccaacaaaat caattacctg taaaatcagt ttatgcggag
      241 tttttgcatt ttgtggcatt aaatcgaccg cttgtagccg atgaagaaaa caaaatcaaa
      301 gagttattgc actacggtcc aacgctggaa gaagacgagc cgacagggtt ttgcctgatt
      361 gttacccctc gtatcggcac gatttcctcg tggtcgtcta aggcaaccga catcgcccat
      421 aactgcggtt tggcagcagt agagcgaatt gagcgtggca cggcatatta tttagaattt
      481 tctgaaacgc cgaacgaaag tcaacttacg acgttgaaag gcttattaca cgaccgtatg
      541 atggaaacgg tgctggataa cgaaagccaa gccgaacagc ttttcgctca gcaagagccg
      601 aagccgttta cttcggtgga tattttaggc ggtggtcgca aggcactgga agaagcgaat
      661 atcaacttag gtttagcgtt ggcggacgat gaaattgatt acttggtgga aaactttacc
      721 caacttgggc gtaaccccaa tgatattgaa ctctatatgt tcgcccaagc caactcggag
      781 cattgccgcc acaaaatttt taatgcggat tggacgattg atggggtaaa acaggaaaaa
      841 tccctgttta agatgattaa aaacaccttt gagaaaaccc cggactatgt gctttccgcc
      901 tacaaagaca atgcggcggt gatggagggc tcaacggttg ggcgtttctt ccccgaccaa
      961 gatggacaat atcgctatca tcaagaagat gctcatattt taatgaaagt agaaactcac
     1021 aaccacccaa ccgccatctc gccattcccg ggagcggcga ccggttcggg cggtgaaatt
     1081 cgtgatgaag gggcgacagg gcgtggggcg aaaccgaaag cgggcttgac gggtttttcg
     1141 gtctctaact tagtgatccc aaaatttgaa cagccgtggg aaaacccgct ttccaagccg
     1201 aatcgcattg cctccgcact ggatattatg attgatggcc cactaggcgg agcggcattt
     1261 aacaatgaat ttggtcgtcc tgcgttattg ggctacttcc gtacttacga agaaaaagtg
     1321 aacagcttcg caggcgaaga aattcgtggc tatcacaagc cgattatgtt agcaggcggt
     1381 atcggcaaca ttcgtgccga acacgttcaa aaaggcgaaa tcccggtggg agcgaagttg
     1441 atcgtgcttg gtggcccggc aatgaacatc ggcttaggcg gtggggcggc atcgtcaatg
     1501 gcatcgggga aatcgaaaga agatttggat tttgcctcgg ttcagcggga aaaccctgaa
     1561 atggaacgcc gttgccaaga ggtgatcgac cgttgctggc agatgggggc ggagaaccca
     1621 attttattta ttcacgacgt gggggctggc ggtttatcaa atgcgatgcc tgaattggtt
     1681 cacgacggcg aatgtggcgg taagtttgat ttgcgtaaca tcttgtgcga tgaaaaagga
     1741 atgtcgccac ttgaaatttg gtgtaacgaa tcgcaagagc gttatgtgct tgccgtttcc
     1801 cctgaaaaac tcgacatttt cacagcattg tgcgaaaggg aaagagcccc atttgcggtg
     1861 attggcgagg caacgaaaga gaagcattta acccttgctg accctcattt tgacaataaa
     1921 ccgattgatt tgccgatgaa tgtgttgctc ggcaaaacgc caaaaatgca gcgagatgtt
     1981 ttgtcaaaaa ctgtgaaaaa tccaccgctt gcaaccgctg acatcgactt gaaagaggcg
     2041 ttccaccgtg tgctacgctt gcctgcggtg gctgaaaaaa ccttcctgat taccatcggc
     2101 gatcgctcag taacgggaat ggtggcacaa gatcagatgg tcggcccgtg gcaaattcct
     2161 gtggcagatt gtgccgtaac caccgcttca ttagacagct atcacggtga agcaatgtca
     2221 attggcgagc gatcacctgt tgctttgctt gactttgctg cctcagctcg cctcgccgtg
     2281 gcagaaagca tcaccaatat tgccgccact aacattggcg acatcaaacg cattaaactc
     2341 tcggcgaatt ggatgtcggc ggcagggcac gagggcgaag acgcagggct ttacgaggca
     2401 gtaaaagcgg tgggcgaaga gctttgccct gaattaggca taaccattcc ggtaggcaaa
     2461 gactcaatgt cgatgaaaac cacttgggag gaaaacggcg aacagaaatc tgttactgct
     2521 ccgctttcgc tcgtgatttc cgctttcgct cgtgtggaag atgtgcgtaa aaccgttacc
     2581 ccacaacttc gcaccgacaa aggcgatacc cgcttgttgc tgatcgacct gggcgaaggc
     2641 aacaaccgct tgggtgcaac cgcacttgct caagtttaca aacaacttgg cgacaaacct
     2701 gccgatgtgg tgaatgtggc tcgcttaaaa ggcttcttca acgcaatgca aacccttgtc
     2761 gcacaaggaa aattgcttgc ctaccacgac cgctcggacg gtggtttaat caccacactg
     2821 gcggaaatgg cgtttgcagg gaattgcgga atttcggtgg aaatcgaccg cttggtggac
     2881 gatttagccg tgttattcaa cgaagaactg ggggcagtaa tccaagttcg caccgaagaa
     2941 ttgagcgagg tgcaagcggt gttaaatgcc gaaaatcttg caaatctcac ctttgatatt
     3001 ggtacagcgg ttgaaagcga cagctttgaa attacccgca acggcacaac agtatttagc
     3061 caaaaacgtt ccgaactgcg tggcatttgg gcggaactca ctcatcaaat gcagcgtttg
     3121 cgagacaacc ctgaatgtgc agaccaagaa tttgcagcga aaaaagaccc gaataacaaa
     3181 ggcttatccg catttttaac ttacgatgtg aacgaagaca tcgccgcccc atacatcaac
     3241 aaaggcgtaa aaccgagtgt ggcgattttg cgtgagcaag gtgtaaacag ccactacgaa
     3301 atggcagccg tctttgaccg tgccggtttc aacgccattg acgtgcatat gtcagacttg
     3361 atttcaggca gacgcaacct caacgacttc aacgcaatgg tggcgtgcgg aggcttctct
     3421 tacggcgatg tcttaggtgc aggcggcggc tgggcgaaat cgattctgtt caacccaatg
     3481 ctgcgtgacc aattcagcaa attcttcgcc aacccgaaca cgctggcatt aggggtatgt
     3541 aatggttgcc aaatggtctc caatctagcg gaaattattc caggcacaga aaactggcca
     3601 cgcttcgtgc gtaataaatc cgaacgtttt gaagcccgtg ctgcaatggt gaaaatcaac
     3661 gacaccaact cactttggtt caacggaatg gcaggcagcc atatgccgat tgcggtttca
     3721 cacggtgaag gacaagttga gttcaaaaat ccacagcaat tagcgaactt gcaacagcaa
     3781 aatctcgtga tcgcacaata tgtggatagc cacctcaacc caaccgaaca atacccagcc
     3841 aacccgaacg gatcggcgtt gggtatcacc gctatcggta atacagacgg acgagtcgct
     3901 attatgatgc cacaccctga acgtgtgttc cgtgcggtca gtaactcttg gtgcccagaa
     3961 gattggacgg aaggtggagc gtggatgcgg ttgtttagaa atgcgagagt ggcgttgaag
     4021 tattaaaaat ctaccttcgt agtgatctgc ccccataggg ggcgattaaa attcgaattc
     4081 atagaacccg aatttttata tatctgataa acgaagttgt ttatccttcg tgcttttcct
     4141 gatatttcaa gtactttctt atcatttctg cattgacatc tacggtgtct acgcagtagc
     4201 ctcttgccac aaaagtgggt tgccccacaa tttatgctta cgtaaatagg gaaacttatt
     4261 gaaaaatctt attggaccct gttcaccctt ttaaatgccc cattacgtct tatacagaaa
     4321 atgaacgtga tttatttgaa cggtcaattc taccttaata gaaagtggtt tttagttagc
     4381 aatcaaaatc acattaacgg aattgagaat ttggagagtc aggcaaaatg ctatttgcgt
     4441 aaatttaacg gcgttcctaa agtacatgaa ttctatttga aagaatgcag atggcgtttt
     4501 aatcacagta acttaaaata tcaagttttc tttttaaaac aattggttaa
//
LOCUS       DANMBQ010000159         4505 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.160, whole genome shotgun sequence.
ACCESSION   DANMBQ010000159 DANMBQ010000000
VERSION     DANMBQ010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4505
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.160"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            114..1382
                     /locus_tag="PXE92_002389"
     CDS             114..1382
                     /locus_tag="PXE92_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL5761580.1"
                     /translation="MTQQIEHSTWQSKFAAMGPGILMASAAVGGSHIIASTQSGAIYG
                     WQLAIIILLANLFKYPFFRFGVQYTLASGKTLLEGYKEKGKFYLIIFFILNVFAAMIN
                     TAAVAIVSAAILKFIFSALGIPLDLSIPMAGTIVIVVTWGILLLGQYKFLDTLSKWIM
                     IALTISTVSAVIIAALKGGVEIAPDFVEPSPWNLAALVFIVALMGWMPAPIEISAINS
                     MWVIAKKRLSKVNYEDGIFDFNVGYIGTAILAIVFLALGALVQYGSGEKVEQAGVAYI
                     AQLIKMYAFAIGDWSKLLIAFIAFMCMFGTTITVIDGYSRANAEALRLISGRKQHSQT
                     ELSIWMTVTALIGILIISQFMSDVAKMLQFAMISSFVSTPVFAWLNFSLVLKGEHRAK
                     GWLFWLAVIGLIYLTSFTLLFLAQQFKLIG"
     gene            complement(1445..3502)
                     /gene="ligA"
                     /locus_tag="PXE92_002390"
     CDS             complement(1445..3502)
                     /gene="ligA"
                     /locus_tag="PXE92_002390"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDL5761581.1"
                     /translation="MSLFNQTSLFEENATPELVEKIETIRQTLRQYEYEYHVLDNPSV
                     PDAEYDRLMNELKNLEWQHPELISADSPTQRVGAKPLAGFAQVTHEIPMLSLDNAFSD
                     EDLDGFLRRMESYITASPSQLEFCCEPKLDGLAVSILYENGILTRAATRGDGTTGEEI
                     TANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSGFNELNEKALAKGEKTFANPRNAA
                     AGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHFERLQWLKSLGIPVNNEIRLV
                     QGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQEQLGFISRSSRWAIAYKFPAQ
                     EEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLGIVIGDTVI
                     IRRAGDVIPQITGVMLERRPENAKKIEFPTACPICHSAVTRVEGEAVARCTGGLFCEA
                     QRKEALKHFVSRKAMDIDGVGEKLIEQLMARELIETPADLFKLDHTTLMRLERMGEKS
                     AQNALNSIEKAKNTTLPRFLFSLGIREVGEATALNLANHFGSLEAIRQATFEQLKEVQ
                     DVGEVVANRIVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLT
                     QLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL
                     TQH"
     gene            complement(3567..4469)
                     /gene="zipA"
                     /locus_tag="PXE92_002391"
     CDS             complement(3567..4469)
                     /gene="zipA"
                     /locus_tag="PXE92_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HDL5761582.1"
                     /translation="MELHIIFFILAGLLIAVLIGFSLWSARREKSNIFSNTFSTRPIA
                     VPPQNNKMSNSIPTSLQPQNEDYQAMSVPEENPQQIQQEVESSLQNIKISLPGGNPQQ
                     QPEQIQPIQSVAEPTVSTYGQKISNQQHIQYNTPDFANPMVNTVVEETPQAVAIEPQE
                     TQSAEEENPFVTLYLYAPQNEAFRGDFVVHYLEEVGLRFGEHQIFHRHQHIDDSLSPI
                     IFSAANLMNPGTFDLNNISNFATAGLVLFMQLPTEGNDVANMKLLISNAEHLAASLGG
                     FLYDDNQQPFGEESRQRYMQRVMH"
BASE COUNT         1161 a          894 c         1001 g         1449 t
ORIGIN      
        1 cataatatct gtattatttt atgaacatct tttctagagg agtgttttta tttggttttt
       61 ataagtagaa tgaaaccatc ttgttttgat agtaatgtga taaggaaagc tatatgacac
      121 aacaaataga acattcaact tggcaaagta aatttgctgc aatggggccg gggattttga
      181 tggcatctgc ggcagtgggt ggttcgcata ttattgcctc tacacaatct ggtgcgattt
      241 atggctggca gctggcgatt attattctgt tagccaattt atttaaatat ccgtttttcc
      301 gctttggtgt gcaatatacc ttagctagcg gtaaaacttt attggaaggc tacaaagaaa
      361 aaggaaagtt ttatcttatt attttcttta tccttaacgt ttttgctgca atgattaaca
      421 cagctgcggt ggcgattgtt tcagcagcga ttctaaaatt tattttttct gctttaggta
      481 ttccgttaga tttaagcatt ccaatggcag gaactattgt gattgtggtc acttggggta
      541 ttttacttct agggcaatat aaattcttag atacattatc taaatggatt atgattgctt
      601 taaccatctc tacggtatct gccgtgatca ttgctgcttt aaaaggtggc gttgaaattg
      661 ctccagattt cgtagagcct tcgccgtgga atttagcagc acttgtgttc atcgttgcat
      721 taatgggctg gatgcctgca ccaattgaaa tttctgccat taactcaatg tgggttattg
      781 cgaaaaaacg tttaagtaaa gtgaattatg aggacggtat ttttgatttt aatgtgggtt
      841 atatcggcac ggcaattttg gcgattgttt ttttagcatt aggtgcgtta gttcagtacg
      901 gttcaggtga gaaagtagaa caagccggtg ttgcctatat tgctcaatta atcaaaatgt
      961 atgcttttgc gattggtgac tggtctaagc ttttaatcgc atttattgca tttatgtgta
     1021 tgttcggcac aacgatcact gttattgatg gatattcacg agcgaatgca gaagcgttgc
     1081 gtttaattag cgggcgtaag caacattcac aaacagaatt aagtatttgg atgacggtaa
     1141 ctgcactcat cggcatttta attattagcc aatttatgag tgatgtggcg aaaatgttac
     1201 aatttgcaat gatttcatca tttgtttcta cccctgtttt tgcgtggtta aatttctctt
     1261 tagtgctaaa aggtgagcat cgtgcaaaag gctggttatt ttggttggca gttatcggct
     1321 taatttactt aactagcttt acgttactgt ttttagctca gcagtttaaa ttgattggtt
     1381 aatgctttta agcattcaat agatagaata aggggcagat ttcaatcatc tgcccctttg
     1441 tttgttaatg ttgagtaagc tcaataaatt gttgctcgct taaaatctga attcccaact
     1501 cttgagcttt tgccagcttg gaaccggctt tttcgccggc gattaagtaa tcggttttgc
     1561 tggaaaccga gccggagact ttacagccca aactttgtaa tagggctttg gcttcatcac
     1621 gggtgagctg ggttagcgtg ccggttaaga ccacgttttt atcttttaac gggttatcta
     1681 caatttcggc tttcacaacg ttttcccaac gtacaccttg agcgatcaaa tcttccacca
     1741 cttccacatt atgcggttct tgccagaagc tgacaatacg gttggcaaca acctcgccca
     1801 catcttgcac ttcttttaat tgctcaaaag tggcttggcg gatcgcctct aagctaccaa
     1861 aatggttggc taagttgaga gcggttgcct cgcccacttc acgaatacct aacgagaata
     1921 aaaagcgagg aagagtagtg ttttttgctt tttcgatgct gttgagagca ttttgagccg
     1981 atttttcccc cattcgctct aatcgcatta gggtagtgtg atcgagctta aacagatcgg
     2041 caggcgtttc aatcagctct cgagccatta actgctcgat tagtttttcg cctacgccgt
     2101 caatatccat tgccttgcgt gaaacgaaat gtttcaaggc ttctttacgt tgagcttcgc
     2161 agaataaacc accggtacag cgtgctactg cctcgccttc tacccgagta acagcggagt
     2221 gacagatagg acaagcggtc ggaaattcaa ttttttttgc attttccggg cggcgttcta
     2281 acatcacgcc tgtaatttgc ggaattacat cgcccgctcg gcgaataatt accgtatcgc
     2341 caatcacaat accaagtcgc tcgatttcat caccgttgtg tagcgttgcg ttacttaccg
     2401 ttacgccagc gacaaaaaca ggctctaatt tcgccacagg ggtgattgcc cctgttcttc
     2461 ccacttggaa gtccacttct ttgaggattg tcatttcttc ttgagccgga aatttatacg
     2521 caatcgccca acgagaggag cgagagataa acccgagttg ctcttgtagg gcaatgtcat
     2581 ttactttcaa tactgtgcca tcaatatcat agcctaatgt tgggcgttta gcctgaatct
     2641 ccgcataata agccaagaga gcagctttgc cttgaaccaa gcggatttca ttatttacag
     2701 gaataccaag cgatttcagc cattgcaaac gttcgaaatg ggtggctggc agttcgtcat
     2761 cgctttcata caccccaatt ccgtaggcat tcagcactaa cggacgctgg cgggtgattt
     2821 tcggatctaa ctggcgaagc gaacctgctg cggcattgcg agggttggca aaggtttttt
     2881 cgcctttagc taaggctttc tcattcagct cattaaagcc tgattgtggc ataaagactt
     2941 cgcctcgcac ctctaatcga gcaggtggat tagtcgtgtt gagctttaac ggaatattgc
     3001 gaatggtgcg gatattagcg gtaatttctt cgccggttgt gccatcgcca cgggttgcag
     3061 ctcgggtaag tataccgttt tcgtataaaa tactcactgc caagccgtct aatttaggtt
     3121 cgcaacaaaa ttccagttgc gaaggagagg cggtgatata gctttccata cggcgtaaaa
     3181 agccatctaa gtcttcatcg gagaaggcat tatccaacga aagcataggg atttcgtggg
     3241 tgacttgagc aaagcctgcc agcggtttgg caccaacccg ttgagtcggc gagtcggcac
     3301 taatcagttc cgggtgctgc cattccagat ttttcagctc gttcattaaa cggtcgtatt
     3361 cggcatcggg tacgcttggg ttatctaaaa cgtgatattc atactcgtat tgacgcaatg
     3421 tttggcgaat agtttcgatt ttctcgacta actcgggcgt ggcattctct tcaaataaag
     3481 aggtttggtt aaataaagac attggtaaaa ttctctacaa aaaagaccgc ttgtacaagc
     3541 ggtcggattt attaattttt tcgcaattag tgcatcacac gttgcatata acgttggcgg
     3601 gattcttcgc caaaaggctg ttgattatcg tcatataaga atccccctaa cgatgctgct
     3661 aagtgttcag cgttactgat taacaacttc atattagcca catcattgcc ttcggttgga
     3721 agttgcataa atagcactaa accagctgtc gcaaagtttg agatattatt taaatcaaag
     3781 gttcctgggt tcattaaatt tgctgcactg aaaataatcg gacttaatga atcatcaata
     3841 tgttgatggc ggtggaaaat ttggtgttcg ccaaaacgta agccaacttc ttctaaataa
     3901 tgtactacaa aatcaccgcg gaaagcttca ttttgtggtg cgtaaagata gagggttaca
     3961 aatggatttt cttcctctgc cgattgggtt tcttgaggtt cgatagctac tgcttgaggt
     4021 gtttcttcca ccactgtgtt caccattggg tttgcaaaat ccggcgtatt gtattggata
     4081 tgttgctgat tagaaatttt ctgaccgtaa gtgctaaccg ttggttctgc taccgattgt
     4141 atcggctgaa tttgctcagg ctgttgctga ggatttccgc ccggcaaact gattttgata
     4201 ttttgcagcg agctttcaac ttcctgttgt atctgttgcg gattttcttc cggcacagac
     4261 attgcttgat aatcctcatt ttgtggctgt aatgaggttg ggatgctatt gctcatttta
     4321 ttattctgtg gtggcacagc aataggtctg gtcgagaatg tatttgaaaa aatatttgat
     4381 ttttcacgac gagcggacca aaggctaaat ccaattagta cagcaatcag tagcccggca
     4441 agaataaaaa aaataatatg cagttccatt gtgtcctctt tatcaaataa tcaataaaaa
     4501 atgta
//
LOCUS       DANMBQ010000160         4504 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.161, whole genome shotgun sequence.
ACCESSION   DANMBQ010000160 DANMBQ010000000
VERSION     DANMBQ010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4504
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.161"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            86..1531
                     /locus_tag="PXE92_002392"
     CDS             86..1531
                     /locus_tag="PXE92_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761583.1"
                     /translation="MRSTFKLTLAALAVSIVLSGCKSSQGPSIVADSPPPKEITATDG
                     NDKEKTDNKEKKSAQPNKSDPQPDKPANAKDPVKPDAETNKPSKKDKEYTPPATEKID
                     NSSVQPDKMVPNPIENKENDSNKPNPKESDSDNNDKVTEGNKPNAPTETVNKDKEAEK
                     SKKENKEDSSNNTPNINFDGAKPIDTDSKGSPYRVINLNPRKSVVNASAMQKVDFDSF
                     TDESVENSPFVSSDTEKEYNNTLVFGLGAGDKDSYFKNLNQKGDKHLGIHSGVYEDAN
                     LEGNTKKINYLYVNQPYSSYGALFTDQKDSHLFNVRLTAGRENGDSYAEYGVFTQSGK
                     EAKWNDNLIGDATYKGQAIARVIRQVNGEQVAGIPQFDGDVTLNLHLSKEWNESKLNG
                     KIDSQSVGVITLKESEIANPTALRSNIGFGEEVIVENKENLVGDYAVDFTGPQLEEAV
                     GVVELENEAETFSENEVIKYNAVFGVSKAAK"
     gene            1595..3007
                     /locus_tag="PXE92_002393"
     CDS             1595..3007
                     /locus_tag="PXE92_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5761584.1"
                     /translation="MKKIALLALFPMMLFARDPNTTQAYIEHTAQPTTTPQRVKIEKS
                     VPIFNETELRANQLLTEKLLIQAIYSRRLANMEKLTAIYRDFTHIDPVLLRYAQGKIA
                     LLKGDYAQAIQHFQTILAKQPKLNTVRIELAIALLYDQQLNQAQAQFEKAKSAEHLPP
                     KVHALIEQYQQHLAKKQEWKFSFSANYVRDGNINRTSKQPNIEQTGYVKQPNLLPQTA
                     HGVHYAFGLQRDFNLFDSHYVSFDNQTQGELYWDNHDYDEITNRTLFGYAYKKSDQTT
                     RLLPFYEKRWKHHRSERWTNGIRLEHAQWFSPHWQLATALEYGKKRYFDLPIYNGSYK
                     LASATLLWLRNPQQFFFVGTDFNQDKTQLKQYSSDTKGIRFGWQREWQALELSSRLTL
                     GYTDRRYKDTAILGGKLNLGRIRHDRVQSANLTLWKRDWHWLGLMPKLQFSYAKHRSN
                     LPSLYAYTDKNINLIIESRF"
     gene            complement(3257..3580)
                     /locus_tag="PXE92_002394"
     CDS             complement(3257..3580)
                     /locus_tag="PXE92_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin"
                     /protein_id="HDL5761585.1"
                     /translation="MQKAYQIYTHSEREKVTEAKLELGKVETRLRNEGKTKEEIAQHP
                     EYLQLKRDLNDKQQTFDNAYGTGSKTKRAVDAVTAALQGLAAKDSGQAAVGLASPYLN
                     EQIKK"
     gene            complement(3549..4076)
                     /locus_tag="PXE92_002395"
     CDS             complement(3549..4076)
                     /locus_tag="PXE92_002395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDL5761586.1"
                     /translation="MRDKNKERQQTLERYQELYDQDPELRVIAANSEGDLDLLQETFF
                     VKGELTITDSTPKEKWNWLHMCNLNSYSPSPLSVVEFYIKHGVDVNAQDCYGMTPLHY
                     AMRAKNVDAAIALLNAGADPNIENKDQVIPLSMIGAVPKEIELIEHDISEVKETQELV
                     KGIGEIAEGLSDLHA"
     gene            complement(4078..4290)
                     /locus_tag="PXE92_002396"
     CDS             complement(4078..4290)
                     /locus_tag="PXE92_002396"
                     /inference="COORDINATES: protein motif:HMM:NF025767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH/ENDO VII family nuclease"
                     /protein_id="HDL5761587.1"
                     /translation="MYCWEHRRLSLAAKELNWSQKQFNDYVNARPENFRLENISENRS
                     HKNEMPGKDNIKSIIDDMKKFQQIGK"
     gene            complement(4305..>4504)
                     /locus_tag="PXE92_002397"
     CDS             complement(4305..>4504)
                     /locus_tag="PXE92_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDL5761588.1"
                     /translation="NQDNLIPLSMIGYLPDRLDVLELMLEKGANVHFLVNKNETILES
                     YKPTEMEPNLAPIYELMLKYA"
BASE COUNT         1444 a          941 c          803 g         1316 t
ORIGIN      
        1 aattatattt tttaaatttt ccctattgcc aaacaggaaa tatatccatt aaaattttat
       61 ggatttaatc tgacggagac aaaatatgcg ttctacattc aaacttactc ttgcagcttt
      121 agctgtttct attgttttaa gtggctgtaa atctagccaa ggtccatcta ttgttgcaga
      181 cagccctcca cctaaggaaa taacagctac tgatggcaac gataaagaga aaaccgataa
      241 caaagagaaa aagtctgcgc aaccaaataa atccgatcct caaccggata aacctgctaa
      301 cgcaaaagac ccagtaaaac ctgatgcgga gacaaataaa ccaagtaaaa aagataaaga
      361 atatacacca cctgctactg aaaaaatcga taactcatca gtacagccgg ataaaatggt
      421 gcctaatcct atcgagaata aggaaaacga cagtaataaa cctaacccca aagaaagcga
      481 tagcgataat aatgacaaag tcactgaagg caataaacca aatgccccaa cagaaacagt
      541 aaataaagat aaagaagctg agaaaagtaa aaaggagaat aaagaggact caagcaataa
      601 tactcctaac attaattttg acggggcaaa gcctatagat acagatagta aaggtagccc
      661 gtaccgagta ataaacctaa atccgagaaa aagcgtagta aatgcaagtg ctatgcaaaa
      721 agtagatttc gactctttta cggatgaatc tgttgaaaat tcaccatttg tcagtagcga
      781 tactgaaaaa gaatacaata atacacttgt ttttgggctt ggtgccggag ataaagattc
      841 ttattttaag aacttaaatc aaaaagggga taaacattta ggtattcata gtggcgtgta
      901 tgaagatgcg aatttagaag gtaatactaa aaaaattaac tatctctatg taaatcaacc
      961 ttattcgagc tatggtgctt tatttacgga ccaaaaagac agccatttat tcaacgttcg
     1021 tctgaccgct ggtagagaaa atggagatag ttatgccgaa tatggtgtat tcacacaatc
     1081 aggaaaagaa gctaaatgga atgataacct gattggtgat gccacttaca aaggtcaagc
     1141 tattgctcgc gttattcgtc aggtaaatgg ggaacaagtc gcaggtattc ctcaatttga
     1201 tggtgatgtt acattaaatt tacacctttc caaagaatgg aatgaaagta aactaaacgg
     1261 caaaattgat agccaaagtg ttggggtaat tacacttaaa gaaagtgaaa tagctaaccc
     1321 taccgcactc cgctcaaata ttggttttgg agaagaagtc atagttgaga ataaagagaa
     1381 tcttgtgggt gattacgctg tcgattttac cgggcctcag cttgaagagg cggtaggcgt
     1441 tgttgaatta gaaaacgaag ccgagacatt ctctgaaaat gaagtcatta aatacaatgc
     1501 ggtatttggc gtaagcaaag cggcgaaata gtattttttg tatcttacaa agggctgtta
     1561 agccctttta tttttattat tttaaggata aaaaatgaaa aaaattgcct tactggcact
     1621 tttcccaatg atgttatttg cccgagatcc taatactaca caggcttata ttgagcatac
     1681 tgcacagcca actacaaccc cccaaagggt caagatcgaa aaatcagtgc ctatttttaa
     1741 cgaaactgaa ttacgtgcta atcaattatt gaccgaaaag ctacttatcc aagctattta
     1801 tagtcgtagg cttgctaaca tggaaaaatt aactgcgatt tatcgggatt ttacccacat
     1861 tgacccggtt ttactgcgtt atgcacaagg taaaattgcc ctactgaaag gcgattacgc
     1921 acaggcaatt cagcacttcc aaaccattct tgccaaacaa cccaaactaa acactgtaag
     1981 aattgagctg gcgattgctc tattgtacga tcagcaactt aatcaagccc aagcacaatt
     2041 tgaaaaagcc aaaagtgccg aacatctacc gcctaaagtt cacgcattaa ttgagcaata
     2101 tcagcaacat ctggcaaaaa aacaggaatg gaaatttagt ttttcagcca attatgtgcg
     2161 agacggcaac attaaccgaa cctcgaaaca gccgaacatt gagcaaaccg gctatgtaaa
     2221 acaacctaat ttgttgcccc aaaccgcaca tggtgttcac tatgcgtttg gattacagag
     2281 agatttcaac ctgttcgact cacactatgt gagttttgac aaccaaaccc aaggtgaact
     2341 ttattgggat aaccacgatt atgatgaaat taccaatcgc accttgtttg gatacgctta
     2401 caaaaaatcc gaccaaacca cccgcttgtt accgttttat gaaaaacgct ggaaacatca
     2461 ccgttcggaa cgctggacaa acggaattcg acttgaacac gcacaatggt tttcaccgca
     2521 ttggcaactc gccaccgcat tggaatacgg caaaaaacgt tattttgatt tgccgattta
     2581 taacggcagc tacaaacttg cctctgccac attgctttgg ttacgcaatc cacaacaatt
     2641 tttctttgtc ggcactgatt tcaatcaaga caaaactcag ttaaaacaat atagctctga
     2701 tactaaaggc atacgctttg gctggcaacg agaatggcaa gccctcgagc tttccagtcg
     2761 cctcacgctt ggctatactg acagacgtta caaagacacc gctatattgg gaggaaaact
     2821 taatcttggc agaatccgcc atgaccgtgt gcaaagtgct aacctcacgc tttggaaacg
     2881 agattggcac tggctcggcc tgatgccgaa gctgcaattt agttacgcca aacaccgtag
     2941 caacctgccg agcctctatg cctacaccga taaaaacatc aatttaatta ttgaaagtcg
     3001 gttctagctc cataaaaaca acaagcggtt aaaattccta gaaattttgc aaattgcaaa
     3061 aaatgtagaa aatttaaccg cttgtatcta tactgcagct tcttttcctt cagtataaat
     3121 taatatacac cgttgcaaca ataatggctg ctccctgtca tcaccttgaa ctgaaaattg
     3181 ctcaaggtgg atatgactat cgcagccgct tccaccgcac ccagtaatgt atgggcaagc
     3241 aggttggctt gggtatctac tttttaattt gttcgttgag atatggcgaa gctaagccta
     3301 ctgctgcttg tcctgaatct ttcgccgcta aaccttgtaa ggctgccgtc accgcatcca
     3361 ccgcacgctt ggttttgctg cccgtgccgt aggcgttatc aaaagtctgc tgtttatcgt
     3421 ttaaatcccg ttttaattgg agatattcag gatgttgagc gatttcttct tttgtttttc
     3481 cctcatttct caaacgggtt tccactttgc ccaattccag cttcgcttcc gtcacttttt
     3541 cacgctcact atgcgtgtaa atctgataag ccttctgcaa tctcgcctat gcccttcacc
     3601 agctcctgtg tttctttcac ctcactaata tcgtgttcta ttaactctat ctctttagga
     3661 actgctccaa tcatagacaa tggaataact tgatctttat tttcaatatt cggatctgcc
     3721 cccgcattta ataatgctat cgctgcatca acattctttg ccctcattgc ataatgtaaa
     3781 ggggtcattc cgtagcaatc ttgggcatta acatctaccc catgtttaat gtaaaattcg
     3841 actacagaaa gaggagatgg tgaataacta tttaagttac acatatgtag ccagttccat
     3901 ttttcttttg gtgtgctatc cgtaatagtc agttcacctt ttacgaaaaa tgtttcttgt
     3961 aaaagatcga gatcgccttc tgagtttgct gcaataactc ttaattcagg atcttgatca
     4021 tataattctt gataacgttc taatgtctgc tgacgttctt tattcttatc tctcatttta
     4081 ctttcctatt tgttggaatt ttttcatgtc atcgattatt gatttaatat tatctttccc
     4141 cggcatctca ttcttatgac tccgattttc agatatattt tctaatctga aattctccgg
     4201 tctcgcatta acataatcat taaattgttt ttgactccaa tttaattctt ttgccgctaa
     4261 tgataatcgg cgatgttccc agcaatatat attctatgca tgcactaagc atatttcagc
     4321 attagttcat atataggtgc taaattaggc tccatctctg ttggtttata gctttccaat
     4381 atcgtttcat ttttattaac taaaaaatgt acattcgcac ctttctctaa cataagttct
     4441 aaaacatcta atctatcagg taaataccct atcattgata aaggtattaa attatcttga
     4501 tttg
//
LOCUS       DANMBQ010000161         4493 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.162, whole genome shotgun sequence.
ACCESSION   DANMBQ010000161 DANMBQ010000000
VERSION     DANMBQ010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4493)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4493)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4493
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.162"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(304..1071)
                     /locus_tag="PXE92_002398"
     CDS             complement(304..1071)
                     /locus_tag="PXE92_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDL5761589.1"
                     /translation="MSKIIKIGKVANNSDAIDAISTQPRHSVIVGTIKRLQTDRIDLL
                     YQHRVDPNVPIEEVAGAIKDLMKQGKVLNWGLSEAGEKTIRKAHAIQPLTAVQSEYSL
                     FFRGREKDVILVCEELGIGFVPWSPLAMGALAGYVDENSRFEADPSKDLRGIIPRFTP
                     EAMQQNVKLIQLVQKWAKRKLCTPAQLSLAWLMAQKAFIAPIPGTSKARHLLDNLGAD
                     DVKFTEEELAQFRQELEAIEIVGLRLPEAILNFSEAK"
     gene            1070..1390
                     /locus_tag="PXE92_002399"
     CDS             1070..1390
                     /locus_tag="PXE92_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761590.1"
                     /translation="MELKVIHKNLVDSAKIKLHAVYLVIFLFVSHFAMIFGMADPISA
                     GYQPTTPAMTHSMQMDAKQITEMHNQMMTGEITPEEMMKMHQEMNPNMNMPNTQGGHS
                     EHHK"
     gene            1572..2027
                     /locus_tag="PXE92_002400"
     CDS             1572..2027
                     /locus_tag="PXE92_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005819327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HDL5761591.1"
                     /translation="MKLHKFTRSLLLLSLGITAFAQAQTLSMEVWKSPTCGCCNEWIS
                     YMQKNGFEVKVNETGNYDAHKRFNIKYEHASCHTAVIDGYVIEGHVPAEDIKRLLAEK
                     PDAIGLSAPGMPIGSPGMDGEAYGGRKDPYDVVLIKKNGESEVFKSYNQ"
     gene            2041..3588
                     /locus_tag="PXE92_002401"
     CDS             2041..3588
                     /locus_tag="PXE92_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase family protein"
                     /protein_id="HDL5761592.1"
                     /translation="MKRRDFLRYGIGISLASSSLYSLANMMNHAQHGNMAMMHSVPTG
                     LMPTEAMPSGLSLNGILPKLANQSTQAGLFKATLKAEPIKIRLADNKETEFWAYNGQL
                     PGPQIEVFEGDTVEIEFINHLPQPSTVHWHGLDVPNEADGNPMDMVEPQGKKVYRFTL
                     PQGSAGTYWYHPHPHDHVSEQVYKGLAGTFVVKAKNDPLAHLPEQHWVISDLRLNADG
                     TIPANTMLDWINGREGEFVLINGQYQPQIQVKTNERIRLWNATSARYFRLNIPGVKWI
                     VVGTEGGLLEKPRSPVDELLLTPAERVEVIMVGETQGTVNLQSGYYDRRKMMVQEQPK
                     DLTLATIQVKSEPVQLPESLRSLPNWDEPKQVRQIRFSEKMMNHTNMPMMNHGTHHAT
                     TTLTDNPIPPMMNGMFLINGQTFDMNRIDFVTKLNEVEQWEIFNESHMDHPFHLHGTQ
                     FEVIQHTLNGKTFKPEGRALKDVVNLRPYEKVIIRFKQGHTGLKMYHCHILEHENLGM
                     MGMFKVE"
     gene            complement(3678..3833)
                     /locus_tag="PXE92_002402"
     CDS             complement(3678..3833)
                     /locus_tag="PXE92_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HDL5761593.1"
                     /translation="MGLNRAEMMYREGAYVIDPVFPATLGYAGAGVVVAVGDDAGEFQ
                     IGDKVSV"
     gene            3922..4101
                     /locus_tag="PXE92_002403"
     CDS             3922..4101
                     /locus_tag="PXE92_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761594.1"
                     /translation="MFLVNQLLAITIATSAVLTNAQLAILAVAFWIAILPCARLATAV
                     GVWVFDDVVHNNSPN"
     gene            4150..>4493
                     /locus_tag="PXE92_002404"
     CDS             4150..>4493
                     /locus_tag="PXE92_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761595.1"
                     /translation="MPFKTVTFAQATTNDGQSLLAVNDLFIGPKSHTSAQYILQWNGA
                     EEVQSSSGIIVSTGLGSTGWFQSILAGAMAITGEASHPLLQGFSWSDRKLQFSVREPF
                     PSRTTGVALTFGT"
BASE COUNT         1387 a          926 c          895 g         1285 t
ORIGIN      
        1 agactaaatt tcagatttta tttttacaca atgtacttac tataaaatac caaacagata
       61 atatttgtcc ataaattcat tgagttgatt atgccatttt tacacttatt gactatagcg
      121 ttttgcctaa tcatctgtct gattccagtt ttaccctttt cccaatatct ttcaatttcg
      181 ataaatcttc cactaatctt gctacatatt caagaaaaag tgcgatcgtt tttcaaagga
      241 ttttatgaaa acgaccgctg taagaaagaa tttttattta cgactttttc aggtatctga
      301 aaactatttc gcttctgaaa aattcaaaat tgcttcaggc aaacgcaagc cgacaatttc
      361 aatggcttct aattcttggc ggaattgcgc caattcttct tcggtaaatt tcacatcgtc
      421 tgcgcctaaa ttatccaaca aatgacgggc tttgctcgtc ccaggaattg gcgcgataaa
      481 cgctttctgt gccattagcc aggccaaaga aagctgtgca ggcgtacaaa gtttgcgttt
      541 tgcccatttt tgcacaagct ggattaactt cacattttgt tgcatcgctt cgggtgtaaa
      601 gcgtgggata ataccacgca aatctttgct tggatcagcc tcaaaacggc tgttctcgtc
      661 cacataacca gccaatgctc ccattgccag cggcgaccaa ggcacaaacc caatccctaa
      721 ttcttcacaa acgagaatga catctttttc acgaccacgg aaaaacaacg agtattcgct
      781 ttgtacggcg gttaaaggct gaatagcgtg tgccttgcga atggttttct cgcctgcttc
      841 cgacaagccc caattcaaaa ctttgccttg tttcattaaa tctttaatag cgccagccac
      901 ctcttcaatc ggcacattgg gatcaacacg gtgttgatag agtaagtcaa tacggtcggt
      961 ttgtaagcgt tttatcgtac cgactattac tgaatggcgt ggttgggtag atatcgcatc
     1021 aattgcatca ctattattag ctacctttcc tatttttatt attttactca tggaattaaa
     1081 agttattcat aaaaatctcg tggatagtgc aaaaattaaa ttacatgcgg tttatcttgt
     1141 gattttctta tttgtgagtc actttgctat gatctttggc atggcagatc ctatttcagc
     1201 aggctatcaa cccactacac cagcaatgac tcattcaatg caaatggatg ctaaacaaat
     1261 aacagaaatg cacaaccaaa tgatgacggg cgaaataacg cctgaagaaa tgatgaagat
     1321 gcatcaagaa atgaacccta atatgaatat gccgaatact caaggtggtc attcagaaca
     1381 tcataaataa taattctgat cacattttaa aaaataatag tggatggtac gttggcatat
     1441 ctctactaca agcagtagga ttttgagaaa aattttcaaa tgatagaatt ttttcagatt
     1501 acttgacctt aaccctaggt taagctttaa aatgatgtcc attcaatctc aataaaaaat
     1561 aaggacatct tatgaaatta cataaattca cccgctcatt gttgctttta agtttaggca
     1621 taaccgcttt tgctcaagca caaacacttt ctatggaagt gtggaaaagc ccgacttgtg
     1681 gctgttgtaa tgaatggatc agctatatgc agaaaaacgg ttttgaggtt aaagtcaacg
     1741 aaacaggcaa ttatgatgct cataagcgct ttaacattaa atatgaacat gcttcttgcc
     1801 acacagccgt gattgatggc tatgtgattg aaggacatgt acctgctgag gatatcaaac
     1861 gtttactcgc agaaaaaccc gatgcaatag gcttgtctgc accgggaatg ccaattggtt
     1921 caccaggtat ggacggtgaa gcatacggcg gacgcaaaga tccttatgat gttgttttga
     1981 ttaagaaaaa cggtgaaagt gaagtgttta aatcctataa ccaatagggg gggggaaaga
     2041 atgaaacgtc gagatttttt acgttatgga attggaatta gcttagccag tagctcgctt
     2101 tatagcctcg cgaatatgat gaaccacgca caacatggca atatggcgat gatgcattca
     2161 gtacctactg gcctaatgcc aactgaggca atgccttcag gtttatcgct taatgggata
     2221 ttaccaaaac ttgctaatca atcgactcaa gctggactgt tcaaagccac tttaaaagca
     2281 gagccaatta aaattcgcct cgcagacaat aaagaaacgg aattttgggc ttataacgga
     2341 caactaccag ggccacaaat tgaagtattt gaaggagata ccgtagaaat tgaatttatc
     2401 aatcacctac cacaaccctc aacagtacat tggcacggct tagatgtacc aaatgaggcg
     2461 gatggtaacc cgatggatat ggttgaaccg caagggaaaa aagtctatcg ctttacgcta
     2521 cctcaaggca gtgctgggac atattggtac caccctcatc cacatgacca tgtttccgaa
     2581 caagtctata aaggcttagc aggcactttc gttgttaaag cgaaaaatga tccgcttgca
     2641 caccttcctg aacaacattg ggtgatttcc gatctgcgtt taaatgccga tggcaccatt
     2701 ccagcaaaca cgatgttaga ttggataaac ggtcgtgagg gtgaatttgt gttaatcaac
     2761 ggtcaatatc agccccagat tcaagtgaaa acgaatgaac gaatccgtct ttggaatgcc
     2821 actagcgctc gttattttcg tttaaacatt ccaggggtga aatggattgt ggtgggtacc
     2881 gaaggtggtt tacttgaaaa acctcgctcg cctgttgatg aactgctact tacaccagcc
     2941 gaacgcgttg aagtgattat ggtgggtgaa acgcaaggaa cagtcaattt acaaagcggt
     3001 tattatgatc gccgtaagat gatggttcaa gaacagccta aagatctcac tttagccaca
     3061 attcaggtga aatcagaacc tgttcagtta cctgaaagct taaggtcctt gcctaactgg
     3121 gatgagccaa agcaggttcg ccaaattcgc tttagtgaaa aaatgatgaa ccatacgaat
     3181 atgccaatga tgaatcacgg tacacatcac gctactacaa cactaacgga caaccctatt
     3241 ccaccaatga tgaatggtat gttcttaatc aacggtcaaa cctttgatat gaaccgtatt
     3301 gattttgtta ccaaattgaa tgaagtggaa cagtgggaaa tcttcaatga aagccatatg
     3361 gatcatccat tccatttaca cggcactcaa tttgaagtaa ttcaacatac gttaaacggt
     3421 aaaaccttta agccagaagg cagagcgtta aaagatgtgg ttaatttacg cccttatgaa
     3481 aaagtgatta ttcgctttaa gcaaggacat actgggttga aaatgtacca ttgccatatt
     3541 ttagaacatg aaaatctcgg tatgatgggg atgtttaaag tggaatagtg gtatctaact
     3601 ataaaaatag agggatttcg tcataaaaaa tctgcacctt aatcagttgg tttttagtcc
     3661 aacttttggg gtgcagatca gacgctcact ttgtcgccga tttgaaattc gccagcgtca
     3721 tcgcccactg ccacgaccac gcctgcccct gcataaccca aagtcgcagg gaacacaggg
     3781 tcaatcacat acgccccttc ccgatacatc atctcggcac ggtttagtcc caatgcacgg
     3841 cacggttttt aaacattttc attatagttt tccttatcaa aatgggattt ggcaaacatt
     3901 gggcaaacct aagcccgccc aatgttttta gttaatcaat tacttgcaat cacaatcgcc
     3961 acaagtgcag ttttgacaaa tgcacagctc gccattttgg cagttgcatt ttggattgca
     4021 attttgccct gtgcaagatt ggcaaccgca gtgggcgttt gggtttttga tgatgtcgtt
     4081 cataacaatt ctccaaatta aaggttgatt atcaaaacaa aaaccgtttt taaacccatt
     4141 aataaaaaaa tgccatttaa aacggtcact tttgcacaag caacaaccaa tgatggtcaa
     4201 tccttattag cggttaatga cttatttatt ggccctaaaa gccacacttc cgcacagtat
     4261 attttgcaat ggaatggcgc tgaagaagtg caatcttcat caggcattat tgtatcaaca
     4321 ggattgggat caacggggtg gtttcaatct attcttgctg gtgcgatggc aattacagga
     4381 gaagcttcgc accctctatt acaaggcttt agctggagtg atcgaaagct acaatttagt
     4441 gtaagagagc catttccaag tagaacaaca ggtgttgcac tgacttttgg cac
//
LOCUS       DANMBQ010000162         4484 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.163, whole genome shotgun sequence.
ACCESSION   DANMBQ010000162 DANMBQ010000000
VERSION     DANMBQ010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4484
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.163"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(120..353)
                     /locus_tag="PXE92_002405"
     CDS             complement(120..353)
                     /locus_tag="PXE92_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761596.1"
                     /translation="MVLLIALSGCTSKTIVSTEYLYPPAAYLVPCERTAFSGKTYGDT
                     VDYLIKVMGERDLCASQIDRIREWQAQTKQGFK"
     gene            complement(319..648)
                     /locus_tag="PXE92_002406"
     CDS             complement(319..648)
                     /locus_tag="PXE92_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HDL5761597.1"
                     /translation="MIKYIYLAATVMILGLCGWIWHQSKQIDGLRAENQTQAQTIEQQ
                     QKANQRLTDSLEQERQAVEKIQKIANELRNKVEMAKNEITSILAQDSCAKADLPNGVA
                     DSIKRLH"
     gene            complement(649..1242)
                     /locus_tag="PXE92_002407"
     CDS             complement(649..1242)
                     /locus_tag="PXE92_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 19 protein"
                     /protein_id="HDL5761598.1"
                     /translation="MWISESKFKQVFPNAVSGIYSIIDKHIEKAGCKTKEQQAMFLAQ
                     CGVECAGYSVFEENLNYSATALLRTFPKYFSQHNVVLYARDKRAIANRVYANRMGNGN
                     EQSGDGWKYRGRGLIQITGKANYIEFAKWEGLPSLVTDPDQITKNLALTVQVAVWYWV
                     SRKLSEFSDILTVTKKINGGTHGLTQRTAYYKKLMAD"
     gene            complement(1232..1576)
                     /locus_tag="PXE92_002408"
     CDS             complement(1232..1576)
                     /locus_tag="PXE92_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin, lambda family"
                     /protein_id="HDL5761599.1"
                     /translation="MPEKNPDIYTQAWNYLVMFLSNHNGWICGVIIAFFTSITKSFLY
                     GKTDTPKRVLAEAILCSVIAGSMRPILIYLNADVSLITPIGAGIGLLGTSAIRQMILK
                     FLNKKAGGENVD"
     gene            1695..2273
                     /locus_tag="PXE92_002409"
     CDS             1695..2273
                     /locus_tag="PXE92_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761600.1"
                     /translation="MIEFDQIDDSFYHFPFRPRPGDTSSDTATPCIGGVDLVSNPEKV
                     ELIPEAAHSPMLKKLLTDLNTPNSKLLTLGCAYWAHKDNRDTSYAYLEFSFREHSVAT
                     NLEFIRSIDEQFEQFLQENKKQLSIEFSVPEQAFDIVSQALFWSIRPFSYFGSEERIL
                     IYFQAGSPRHQDLEIFLDLLHRFLTEYLVVPA"
     gene            complement(2288..2363)
                     /locus_tag="PXE92_002410"
     tRNA            complement(2288..2363)
                     /locus_tag="PXE92_002410"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2328..2330),aa:Trp,seq:cca)
     gene            2790..2984
                     /locus_tag="PXE92_002411"
     CDS             2790..2984
                     /locus_tag="PXE92_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761601.1"
                     /translation="MALSRTEIVNRSNAKRGIKLKAFKLHESTIAQIEQLAQQLNIPQ
                     NQLIKLAVEKLQEQTNFTTG"
     gene            complement(2952..3317)
                     /locus_tag="PXE92_002412"
     CDS             complement(2952..3317)
                     /locus_tag="PXE92_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761602.1"
                     /translation="MQIDVKGVLNLWGGYVRFTDCKGYPTMQAFMRESPQERTKQRYL
                     ARLDDDTLEKVDRQMRKLQANDKRQFDVLFYKYAVGLENKQVWQKLSLSKTSYHTELL
                     LAERFMEGALAGSEIRLLL"
     gene            complement(3307..3675)
                     /locus_tag="PXE92_002413"
     CDS             complement(3307..3675)
                     /locus_tag="PXE92_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HDL5761603.1"
                     /translation="MSDWLEIALPYPPSVNHYWKHTRNGRHYISDKGKAFRAEVVKIC
                     KMFDPFKGAVQTVLQIYYPDKRKRDPDNLEKALWDALKIGGLIEEDDNQILVDKRTIT
                     AGFKKGGMVVLKIKAVGNAN"
     gene            complement(3672..3956)
                     /locus_tag="PXE92_002414"
     CDS             complement(3672..3956)
                     /locus_tag="PXE92_002414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005672808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1364 domain-containing protein"
                     /protein_id="HDL5761604.1"
                     /translation="MANLRKEAKGRECQVRLPGICNHNPETVVLAHYRMAGLNGVGMK
                     PDDIFGAWACSSCHDECDRRTRKLEADYVRQAHAEGVFRTQAILRREGKL"
BASE COUNT         1360 a         1043 c          743 g         1338 t
ORIGIN      
        1 tatgcaacac attgcttagt tatgatcttg atacaatcaa aagcataact aagtaatgta
       61 acgcaaatga aaagggagca attaagctcc cactctcatt agcggtttaa tccgccaagt
      121 tatttaaacc cttgcttagt ctgtgcttgc cactctctaa tacggtcaat ttgactcgca
      181 cacaaatcac gctctcccat tactttaatg agataatcca ccgtatcgcc gtaggtttta
      241 ccgctaaatg ctgtccgctc gcacggcaca aggtaagccg caggcggata taaatactca
      301 gtgctgacga ttgttttgct agtgcaaccg cttaatgcta tcagcaacac cattaggcaa
      361 atcagcctta gcacaactgt cttgtgccag tattgatgta atttcattct tggccatctc
      421 cactttattc cgcagctcat ttgcaatttt ttggattttt tcgaccgctt gtcgctcttg
      481 ctctaagcta tcggttagcc gttgattggc tttttgctgc tgctcaatgg tttgggcttg
      541 tgtttggttt tcggctctta agccatcaat ctgcttggac tggtgccaaa tccagccaca
      601 caaacccaaa atcattactg tggcagctag ataaatgtat ttaatcattt agtccgccat
      661 tagcttttta taataagctg tacgctgagt tagaccgtgc gttccgccat taatcttttt
      721 agtaacagta agaatgtcgc taaattcgga taacttgcga cttacccagt accaaacagc
      781 cacctgtact gtcaatgcta gatttttagt gatttggtcg gggtcagtca ctagacttgg
      841 taagccttcc catttagcaa actcgatata atttgcctta ccggtaattt gaattaagcc
      901 acgcccacga tatttccaac catcgccact ttgttcattg ccgttaccca ttcgatttgc
      961 atacacccga ttagcaatag cacgcttatc tcgagcataa agtacgacat tgtgttggct
     1021 aaagtatttc gggaatgttc gcaatagagc agttgcagaa tagttaaggt tttcttcaaa
     1081 tacactatat ccggcacatt ctacaccaca ctgagccaag aacatcgctt gttgctcttt
     1141 tgttttgcag cctgcttttt caatgtgttt gtcaataatt gagtaaatac cactaactgc
     1201 attagggaat acttgtttaa acttactttc actaatccac attttcacca cctgcttttt
     1261 tgttcaagaa ttttaaaatc atctggcgaa ttgcacttgt acccaataat ccaattcccg
     1321 caccaatagg ggtaatcagt gatacatcag cattgagata aattaaaata ggacgcattg
     1381 agccagcaat aacgctacac aagatagcct ctgccagcac tcgtttaggt gtatctgttt
     1441 taccatacag aaatgacttg gtaatagatg taaaaaaagc aatgataacg ccacaaatcc
     1501 agccattatg attgcttaaa aacattacaa gataattcca agcctgcgta tatatatcag
     1561 ggttcttttc aggcattgta ttcatactcc accccgtttc gaggcaataa aaaagcccag
     1621 tcgtaaaact gagccttggt taaaaattct gctagaatac tgttccccaa caaataaact
     1681 agcagaggtt aaaaatgatt gaatttgatc aaattgacga tagtttctat cacttcccat
     1741 ttagaccacg tccgggcgac acttcaagcg acactgccac accttgtatt ggtggagtag
     1801 atcttgtttc caatcctgaa aaggtagaac taataccaga agccgcacac tccccaatgt
     1861 taaaaaagtt actcacagac ttgaacactc caaacagcaa acttctaaca ctaggctgtg
     1921 cttattgggc tcataaagac aatagagata catcatacgc ttacttagag ttttcattcc
     1981 gggaacattc agttgcaact aacctagaat ttatcagaag tattgatgaa cagttcgagc
     2041 aattcttgca agaaaataaa aagcagttat ctattgaatt ttccgtgcct gagcaagcat
     2101 ttgatatagt ttcacaagct cttttctgga gtattcgtcc attttcttac ttcggaagcg
     2161 aagagcgcat cttgatatac tttcaggctg gtagtcctcg acatcaggat ttagaaatct
     2221 ttttggattt actacaccgc tttttgactg agtatttagt tgttccagca taacatttac
     2281 tcgcatttgg aaagggtggt tggactcaaa ccaacaacca acgattttgg agaccgttgc
     2341 tctacctatt gagctacacc cttaaaatcc gtaaacaaaa aagccccaag catttctgct
     2401 cagggctgta aaattctttt aagttcacca cctatgcaat gaaccgcaac ttaccataaa
     2461 taatatagat taagtccgaa ctttgcaaca ctttttaatc atttaaatgc aaaaaagccc
     2521 ataatttaca aaaccatggg ctttttaacg atattttgct tgaatatatt ggttatccaa
     2581 catataataa acttgttttc agtaatagtg ctggaaacga gccggtggcg acctttaatc
     2641 ccaccgactt ttggagggat aacaaatgct ttaccgcatt atcctagtta tcattctctt
     2701 agtgattagc ctgccagcat actaattgaa tgaaactaag tagggggaga aatctcccta
     2761 ctcttcaaaa cctatattaa ggatttatga tggcactgtc aagaaccgaa attgtaaacc
     2821 gtagcaacgc aaaacgggga attaaactta aagcctttaa actgcacgaa agcacaatcg
     2881 cacaaatcga gcaacttgcc caacagttaa atattcccca aaatcaacta attaaattag
     2941 ccgttgagaa gctacaagag caaacgaatt tcactaccgg ctaatgcccc ctccataaat
     3001 cgttcagcaa gaagtaattc tgtatgatat gaagtcttgc tgagcgataa cttctgccaa
     3061 acctgcttat tctctaaccc tactgcatat ttataaaata gtacatcgaa ttgtcgcttg
     3121 tcgttcgctt gtagcttccg catttgccga tcgactttct caagcgtatc atcatctaag
     3181 cgggctaaat aacgctgttt tgttctctct tgtggagact cacgcataaa tgcctgcatt
     3241 gtcggatagc ccttgcagtc ggtaaaacgc acatatccac cccataaatt taatacaccc
     3301 tttacatcaa tttgcattac ccaccgcctt aatctttaac accaccattc cccctttctt
     3361 aaaacctgcc gtaatggttc gcttatcgac taaaatttga ttatcgtctt cttcaattaa
     3421 gccaccgatt tttaatgcgt cccacaaggc tttttctaaa ttatctggat cacgcttgcg
     3481 tttatcagga tagtaaatct gcaataccgt ttgtaccgct cctttaaacg gatcaaacat
     3541 tttgcagatt ttcaccactt ccgccctaaa ggctttcccc ttatctgaaa tataatgcct
     3601 accgtttcgg gtatgcttcc agtaatggtt cacactcggc ggataaggca acgcaatttc
     3661 aagccaatca ctcataattt cccttctctc cgtaaaatag cctgcgttct aaatacgccc
     3721 tctgcatgag cctgtctcac ataatccgct tctaatttgc gagttctacg gtcgcactca
     3781 tcgtggcagc tactgcaagc ccacgccccg aaaatatcat cgggtttcat tcccacaccg
     3841 tttaatcctg ccattcgata gtgagccaat accaccgttt ccggattatg attacagata
     3901 cccggtaaac ggacttggca ctctctgcct tttgcctctt tgcgtagatt agccattcca
     3961 acctccttgg tctcttttat caaaccactc aataaaaaag agtgaaccgg cacatacact
     4021 aagaatagcg atagtgatta aaattacagt cagttcattg cactggctca cttattaatc
     4081 tccttaaatt aaataacatt ccacataaaa ggaataatcc gcaaccgata acaaacgata
     4141 ttaaaatcca aaaccctaac tgaataatca ccataaacca cggtgcgttt ttaatattca
     4201 ttaaagtagt attaatcgcc aataaacagc ttggaataat gccaaataac atcacgagtg
     4261 cgatagtttc aaagaatttt tgtcattttg atttctccta cccccgaatt cgagggaatt
     4321 aataaacaca cactaaatcg gattaaaatc gctcttaaag tcatcaaggc attcttgata
     4381 tttccattga ccgataacaa taaaactacc gactgccaca aaaaatgcta atggataaat
     4441 caataagtac ccgatatatc taagagtaag aattgacaaa gaaa
//
LOCUS       DANMBQ010000163         4439 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.164, whole genome shotgun sequence.
ACCESSION   DANMBQ010000163 DANMBQ010000000
VERSION     DANMBQ010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4439
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.164"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..980
                     /locus_tag="PXE92_002415"
     CDS             <1..980
                     /locus_tag="PXE92_002415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761605.1"
                     /translation="QGMAVTTVDVEAGVQVEDVQTGECVVANNICSHDIWMSGAKNAI
                     INSNLCRRLRVTSGNPTDTGSNNVEFSNNQAKSIAISKYGSFDNPSLFIDNINFINNI
                     LEPSEFNQDVYIDGTILKQCQFINNRCISKSKQYSVRLARNNPFLNLTFKSNKLSDNP
                     AIISGKQGVIFCDDLSLGVNKHRLRLRFSSPINFTVNQEWQKMPFDRVLNDINGHVDI
                     VSGQFIARTGGTFHLKGKITVTNSSEDVLNLYQLRLLINNEEKERLINQSVSPKNSKS
                     NTNGMTTINFDTVVDLKVGDIVDLQYKTTHELTLLSDSFLSQIYVTQEF"
     gene            complement(1583..3178)
                     /locus_tag="PXE92_002416"
     CDS             complement(1583..3178)
                     /locus_tag="PXE92_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5761606.1"
                     /translation="MRLSQLSLSVLLLSASSLVAAAPVNTLINCVATPPMKLSPAITN
                     DANDFNASSQQIYNRLLAFKAGELTVEPSLAERWEISDDGLSYTFHLRKDVKFHSNKQ
                     FTPTRTLNADDVVFSFQRQMDLNHPYHKVSDGTYFYYHWMNLPKILKTVEKVDDYTVK
                     ITLQQPNAPFLTTLAMDFLSIYSKEYADKLLAEGKPELLDQAPIGTGPFVFQAYQTDQ
                     AVRYVANPDYFQGKAKFEKLIFSITPDAGTRYAKLKAGECDVIDFPNISDIAQMKQDP
                     KVNLLQRDGLNLAYIGLNSTKPALNNAKVRQALHYATDKKAIVEAVYQGGGTVASNPF
                     PDSVLGYNPNLPQYEFNLEKAKALLTEAGFADGFETEIWVQPVVRPSNPNPRRTAEII
                     QADWAKIGVKAKLVTHEWADFNKRTREGEFSTGTYGWTSRNGDPDNFLFPLLSKSNIP
                     GTNYGRWTDEKFEQLLAQAVQTQNRDERAKLYQQAVEIANEQTPFIPLAHAINYVPLS
                     KRVQGFVQNPFGYTPFYGVSLSE"
     gene            3327..3767
                     /gene="mioC"
                     /locus_tag="PXE92_002417"
     CDS             3327..3767
                     /gene="mioC"
                     /locus_tag="PXE92_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HDL5761607.1"
                     /translation="MTSICIITGSTLGGAEYVADHINEVLSEQGFEVELFNQATLADI
                     EGKTNLIIVTSTHGAGELPENIQQLFDDLANSSADFSSMKFGVIGLGSSDYDTFCNAV
                     NIVEEALKAKGASQVCESLRIDVMNNFDHDGSAEEWLPSFVEQL"
     gene            3779..3946
                     /locus_tag="PXE92_002418"
     CDS             3779..3946
                     /locus_tag="PXE92_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HDL5761608.1"
                     /translation="MNKISANKAKWIKIAIILIYMFSPVDILPEAILGPFGLVDDAAA
                     LMLLIKTILEK"
     gene            complement(4035..>4439)
                     /gene="asnC"
                     /locus_tag="PXE92_002419"
     CDS             complement(4035..>4439)
                     /gene="asnC"
                     /locus_tag="PXE92_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HDL5761609.1"
                     /translation="KDARTPYAEMAKVFGVSAATIHVRVEKMRQAGIIESTKIVVDER
                     KVGYDVCCFIGIILKSAKDYDKVIAKLSEFNEVVEAYYTTGNYSIFIKVMTHTIEELH
                     SVLAGKIQSIDEIQSTETLISLQNPISRDILP"
BASE COUNT         1387 a          858 c          899 g         1295 t
ORIGIN      
        1 aacaggggat ggcagtgacg acagttgatg tggaagcggg cgtacaagtg gaagatgtac
       61 aaactggcga atgtgtggta gcgaataata tttgcagcca cgatatttgg atgtctggtg
      121 ctaaaaatgc cattatcaac agcaacctct gccgtcgctt gcgtgtcaca tcaggtaatc
      181 cgactgacac aggcagcaac aatgtagaat tttcaaataa tcaagcaaaa tctattgcaa
      241 tatcgaaata tggttctttc gataatcctt cattgtttat tgataatatc aattttatta
      301 ataacatttt ggagcccagt gaatttaatc aagatgtgta tattgacggg acaattttaa
      361 aacagtgcca atttattaat aatcgttgta ttagcaagtc taagcaatat tctgtcagac
      421 ttgctcgcaa taatccgttc ttaaatttaa catttaagag taataaatta tcggacaatc
      481 ctgcgattat atcaggtaag caaggtgtta ttttctgcga tgatttgagc ttaggagtaa
      541 ataagcacag attaagattg cgattttcat cgccgattaa ttttactgtt aatcaagaat
      601 ggcaaaaaat gccgtttgac agagtgttaa atgatatcaa tggtcatgtt gatattgtca
      661 gtggtcaatt tattgcaagg acaggcggga cttttcattt aaaaggtaaa ataacggtta
      721 caaattcatc ggaagatgtg ctgaatttat atcaactcag gctgttaata aataacgaag
      781 agaaagaaag actgattaat caaagtgttt cacctaaaaa cagcaaatca aatacaaatg
      841 gtatgacaac aatcaatttt gatactgtag ttgatttaaa agtaggtgac attgttgatt
      901 tgcagtataa aacaacgcat gagttgacat tactgtcaga ctcattttta tctcaaattt
      961 atgtgactca ggagttttaa gtgactaaaa aacactactg cacaggctgg cgtaatgcgc
     1021 cagccaatat caatagttgc tgtcatcagc atgaccgaga ctacggtatc aagggcacag
     1081 tcagccgagc cgaagccgac aagcggttaa gacattgctt aatttcgcaa gggaatccga
     1141 ttaaggcgtg ggtgttttgg gttgtggtga ggttgtttgg gtggatttat tacaaggaga
     1201 aaaatatcaa tggaaagtca taaaacagga aatatcatta ctgagcaagc aagcaagcaa
     1261 gcaagcaagc aagcaagcaa gcaagcaagc aagcaagcaa gcaagcaagc aagcaagcaa
     1321 gcaagcaaag tgtagctcaa tttaaacaag ctccgctacc ttttacaggt caaaagcgga
     1381 tgtttttaaa acacttttaa tgatgattta aagggcgttt gttttcagtt tattttgcat
     1441 aacttttgtg attacggcta tgcaaaatga tttgcaaaac tatgcaaaat aaatcgaccg
     1501 cttacaattc taaaagaaaa gcagtctatt ctctaccaca ttttgcaaaa aagtggcaaa
     1561 aatagaccgc ttgtatggca tatcactccg ataaactcac cccataaaat ggcgtgtagc
     1621 caaacggatt ttgcacaaaa ccttgcaccc gtttgctgag tggtacataa ttgatagcgt
     1681 gagccagcgg aataaatggc gtttgttcgt tggcaatttc caccgcttgt tgatagagct
     1741 tcgcccgctc gtcacggttt tgggtttgta cagcttgagc taataactgc tcaaatttct
     1801 catccgtcca acgcccataa tttgttcccg gaatattaga tttgcttaat aaagggaaga
     1861 ggaaattatc aggatcacca ttacggcttg tccaaccata agtgccggta gagaactcgc
     1921 cttcacgggt gcgtttgtta aaatccgccc attcgtgggt cactaatttc gctttcaccc
     1981 cgattttcgc ccaatccgcc tgaataattt cagccgttcg acgtgggttt gggttagaag
     2041 ggcgcactac cggttgtacc caaatttccg tttcaaatcc atcggcaaag ccggcttctg
     2101 ttaatagggc tttggctttt tcaaggttaa attcatattg cggtaaattt ggattatagc
     2161 ccaacaccga atcagggaac ggattacttg ccaccgtgcc accgccttga taaacagcct
     2221 cgacaatcgc tttcttatcg gttgcataat gcaaggcttg gcgaactttg gcgttattta
     2281 atgccggttt ggtgctgttt aagccgatat aagctaaatt cagcccgtct ctctgtaaca
     2341 aattcacctt cggatcttgt ttcatttggg caatatcgga aatattcggg aaatcaatca
     2401 catcgcattc acccgctttc agtttggcat aacgagtgcc cgcatcaggg gtaatactaa
     2461 aaatcagttt ctcaaatttt gctttacctt ggaaataatc cgggttcgca acataacgca
     2521 ccgcttgatc ggtttgatag gcttggaaca caaaaggccc tgtgccgatc ggggcttgat
     2581 ccaataactc cggcttgcct tccgccagca atttatccgc atattctttt gaataaatcg
     2641 acaagaaatc catcgctaag gttgtcagaa aaggagcatt aggttgctgt aaggtgattt
     2701 taacagtgta atcgtccact ttttccactg tttttaaaat cttcggcaaa ttcatccaat
     2761 ggtaatagaa ataagtaccg tcagagacct tatggtaagg gtggtttaaa tccatctggc
     2821 gttggaacga gaacactaca tcatccgcat tcagcgttcg agttggcgta aattgtttat
     2881 tggaatgaaa tttcacgtct ttacgtaaat ggaatgtgta acttaagcca tcgtcactga
     2941 tttcccaacg ttccgccaaa ctcggctcaa ccgttagttc accggcttta aacgctaata
     3001 agcgattata aatttgttgt gaactggcgt tgaaatcatt ggcatcatta gtaattgcag
     3061 gactaagttt catcggtgga gttgccacgc aattaatcaa cgtatttacc ggagctgctg
     3121 ccaccaaact gctggcactt aagagtaaaa cagaaagaga taattgagaa agacgcataa
     3181 agactcctta acattttcta ctaacttact cggcattaac gtattttcaa aataactaaa
     3241 ggttataatt tataatcaga ataatcagtt gcaaaccaat gattcttggc tagaatattg
     3301 gcagtttttt aaacgagaga tttactatga catcaatttg tatcatcacc ggcagcacct
     3361 taggcggtgc ggaatatgtt gccgatcaca ttaatgaggt attaagcgaa caaggttttg
     3421 aagtggaact gtttaaccaa gccacccttg ccgatattga gggcaaaacc aatctgatta
     3481 tcgttacctc tacccacgga gccggcgagt tacccgaaaa tatccaacag ctatttgacg
     3541 atttagcaaa tagctcggct gatttcagca gtatgaaatt tggtgtaatc ggtttaggta
     3601 gctccgacta tgacaccttc tgcaatgcag taaatattgt tgaagaagct ctcaaagcga
     3661 aaggggcaag ccaagtttgc gaatcactga gaattgatgt aatgaataat ttcgaccacg
     3721 atggcagtgc tgaagaatgg ttaccatcat ttgttgaaca attataactt aagtatcaat
     3781 gaacaaaatc agtgcaaata aggcaaagtg gattaaaatc gctattatct taatctatat
     3841 gttcagccct gtagatattc tacccgaagc gattttaggc ccattcggtt tggttgatga
     3901 tgccgccgca ttaatgctat tgattaagac tattttggaa aaataggcat agtagacaaa
     3961 atagttgcaa aaaaccaaaa caaaacgacc gcttgtaacc caatacaagt ggtcttatct
     4021 tttacttaat tcttttaagg gagaatatct cttgaaatag gattttgaag tgaaataagc
     4081 gtttctgttg actgaatttc atcaatagac tgaatttttc ctgctaatac cgaatgcaac
     4141 tcttcgatgg tatgggtcat tactttaata aaaatagaat aattaccagt ggtatagtac
     4201 gcctcaacaa cttcattaaa ttcactaagt ttagcaatta ctttatcata atctttggct
     4261 gattttaaaa taatgccaat aaagcaacac acgtcatacc caaccttacg ctcgtccact
     4321 acgattttgg tagattcaat aatgccggct tggcgcattt tttcaacacg gacatggata
     4381 gttgcggcac tcacaccaaa aacttttgcc atttccgcat aaggcgtgcg agcatcttt
//
LOCUS       DANMBQ010000164         4402 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.165, whole genome shotgun sequence.
ACCESSION   DANMBQ010000164 DANMBQ010000000
VERSION     DANMBQ010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4402)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4402)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4402
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.165"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            139..579
                     /locus_tag="PXE92_002420"
     CDS             139..579
                     /locus_tag="PXE92_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL5761610.1"
                     /translation="MTACKNGLGFLVLRLFLAYEFFEAGLSKLNGENWFASIQESFPF
                     PFNVLPADLSWAIASGAEILLPILLTLGLFTRFSALGLMILTAVAWYAVHAGNGYNVC
                     NNGYKMALIYLVMLVPLLLQGAGSLSLDFLLQKKSPTKRWLKFL"
     gene            605..892
                     /locus_tag="PXE92_002421"
     CDS             605..892
                     /locus_tag="PXE92_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761611.1"
                     /translation="MKKATLMALAGALTMATATVNAETKSVKADACMEVKDGKCVKTK
                     ATEGKCGEGKCGATSSEPKATEGKCGEGKCGATAPKAAEGKCGEGKCGASK"
     gene            993..1916
                     /locus_tag="PXE92_002422"
     CDS             993..1916
                     /locus_tag="PXE92_002422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 family protein"
                     /protein_id="HDL5761612.1"
                     /translation="MLKFTGAGLGYRRDLADGFLSLTDNNIINFMEVAPENWLKMGGQ
                     ARYNFDKVAEKIPVIIHGLSLSLGGQAPLDMTLLKGIKNMQQQYNSFFFSDHLSYCEC
                     EGHLYDLLPMPFTDEAVHHVANRIKQVQDYLGMQISLENTSYYLHSPTSTMNEVEFLN
                     AIAQEADCGIHLDVNNIYVNGVNHGLLDPFVFIDQVDKSRVNYIHIAGHDEDHGAAED
                     VKMTEGESFNMVKGELRHLPTLLVDTHGEAVQKTVWDLLEYTYEHLPHIPPTLLERDF
                     NFPPFQELISEVQHIMSLQKKYAKTRLKNAA"
     gene            1906..2646
                     /locus_tag="PXE92_002423"
     CDS             1906..2646
                     /locus_tag="PXE92_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding domain-containing protein"
                     /protein_id="HDL5761613.1"
                     /translation="MPLKLVEEHKPLLKEIQAEFANAIRHNDVKLMSGNISPQRLGVY
                     SRLVRNNTLGFIDRCYVQLPQHLSPEEWVAVKEKFIREGKAHSPFFQDIAGEFLNFCR
                     ENGCMPPHLLELMDFENAQLLAEVSMATVPSEFEWDNDTIMQFSGAAELRQYAVNFIR
                     SEFKQFDFEPTNVLIWRDTEFGIYYNRLEELDFFLLSSLQEGANSLNGLLAELSEFTE
                     QNLELKALLRQLWEKWVEAEVIYPVYPE"
     gene            2865..3446
                     /locus_tag="PXE92_002424"
                     /pseudo
     CDS             2865..3446
                     /locus_tag="PXE92_002424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252416.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
     gene            3447..3617
                     /locus_tag="PXE92_002425"
     CDS             3447..3617
                     /locus_tag="PXE92_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL5761614.1"
                     /translation="MLKCKQITELVSLSQEQKLTLKQRVNVQVHLMLCSRCRAFSQNC
                     KTVDKLMKEFNS"
     gene            complement(3755..4330)
                     /locus_tag="PXE92_002426"
     CDS             complement(3755..4330)
                     /locus_tag="PXE92_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5761615.1"
                     /translation="MKRYPIRKREIYVENNIFQMVYEVADQDMRDLMDLAYITGQRPV
                     DLVNIRKEHIFDGYLHIVQQKTQAKLRIEIVGKLADIIQDRLEKATGTHLFSTKKGEK
                     LTARKLGKRFTYIREQAVKNNPEYANEIMAFQFRDLRAKSGTDKALSLGEEAARQQLG
                     HTSVQMTKTYIRKAPIVTPIKESVPSSKHQS"
BASE COUNT         1315 a          850 c          926 g         1311 t
ORIGIN      
        1 ctataaaaat aggttataat ttttcacaca ttttttgtaa taaacgtata cttattctgt
       61 ctaataatca catttttagt taggagcatt tttatgtcat cattttcgtc atcattttca
      121 actcagtcag cttgctcaat gacagcttgt aaaaacggct tgggctttct tgtattacgt
      181 ctatttcttg cttatgaatt ttttgaagca gggttatcaa aactaaacgg tgaaaattgg
      241 tttgcctcaa ttcaagagag cttcccattc ccctttaacg tactaccagc cgatcttagc
      301 tgggctattg ctagcggagc ggaaatctta ctgcctattt tactcacttt gggtctgttc
      361 acccgcttca gtgcgttagg attaatgatc ttaacagcgg tagcgtggta tgctgttcac
      421 gctggcaatg gctacaatgt ctgcaacaat ggctataaaa tggcactcat ttatttagtg
      481 atgttagtac cacttttatt acaaggtgct ggctcgctct ctctcgattt tctgttacag
      541 aaaaaatccc caaccaaacg ctggttgaaa ttcctttaat cccttaattt atggagaatt
      601 tttaatgaaa aaagcaactt taatggcatt agctggtgca ttaactatgg caaccgcgac
      661 tgtaaacgct gaaactaaat cagtgaaagc agatgcttgt atggaagtaa aagatggcaa
      721 atgtgtaaaa accaaagcta cagaaggtaa atgtggcgaa ggcaaatgtg gagcaacctc
      781 ttctgagcca aaagcaaccg aaggtaaatg cggcgaaggg aaatgtggag caacggcacc
      841 aaaagcggca gaaggtaaat gcggtgaagg caagtgtgga gcttctaagt aagtagcgaa
      901 ggtgcgtttt ctaaacgcac ctaacctctt ataaacacaa tctacaagcg gttaaattcc
      961 gctgattttt tgcaaattaa aggaacaaga cgatgttaaa atttactggt gccggtctag
     1021 gctatcgccg tgacctagcg gacggatttt tatctctcac agataacaat ataattaatt
     1081 ttatggaagt agccccagaa aactggctga aaatgggcgg tcaggctcgg tataacttcg
     1141 ataaagtcgc tgaaaaaatc cctgttatta ttcacggttt atccctctct ctcggcgggc
     1201 aagcgccttt agatatgacg ctactaaaag ggatcaagaa tatgcagcag cagtataact
     1261 cctttttctt ctctgatcat ttaagctatt gcgaatgtga agggcattta tatgacctgc
     1321 tgccaatgcc gtttaccgat gaagccgtac atcacgtggc aaatcgcatt aaacaagtgc
     1381 aagattattt aggtatgcaa atttcccttg aaaatacgtc ctactatctg cattcaccaa
     1441 ccagtacgat gaatgaggta gagtttctca atgcaattgc ccaagaagcg gattgtggca
     1501 ttcaccttga tgtgaataat atttatgtta atggtgtcaa tcacggcttg cttgatccat
     1561 ttgtatttat tgatcaagtg gataaatctc gtgtcaatta tattcatatt gcaggccacg
     1621 atgaagatca cggtgcggcg gaagacgtta aaatgaccga gggtgaatca tttaatatgg
     1681 taaaaggcga actacgtcat ctgccaactt tactggtcga tacacacgga gaagctgtac
     1741 aaaaaactgt gtgggattta ctagagtaca cctatgaaca cctaccgcat attccaccaa
     1801 cactgttaga acgggatttc aacttcccac cgtttcaaga actgattagt gaagtacagc
     1861 acattatgag cttacagaaa aaatatgcaa aaacgaggct aaaaaatgcc gcttaaactc
     1921 gttgaagaac acaaaccgtt actcaaagag attcaagccg agtttgcgaa tgcaattcgc
     1981 cataacgatg taaagctgat gagtggtaat atctctccac agcggcttgg cgtctattct
     2041 cgcttggttc gcaataatac tctcggtttt atcgaccgtt gttatgtaca gctccctcaa
     2101 catctaagtc ctgaagaatg ggttgccgtt aaagaaaaat ttatacgaga aggtaaggct
     2161 cattcgccct ttttccaaga tattgctggc gaatttctca atttttgccg agaaaatggc
     2221 tgtatgccac cacacttgct tgagttgatg gactttgaaa atgctcaatt actggctgag
     2281 gtatcaatgg caaccgtacc atcagaattt gaatgggata acgatactat aatgcagttt
     2341 tctggtgcag ctgagctgcg tcaatatgcg gtaaacttta tccgtagcga gttcaaacag
     2401 tttgactttg agccgaccaa cgtactgatt tggcgagata cggaatttgg catctattac
     2461 aaccgcttgg aagagctgga tttcttcctg cttagctcgt tgcaagaggg ggcaaattcc
     2521 ctgaatggct tactagcaga actcagcgag tttaccgagc aaaatctgga gctaaaagcc
     2581 ttgttacgcc aactttggga aaaatgggtt gaagcagagg tgatttatcc tgtctatcct
     2641 gaatgaggat aaggtatgtg atatgtactg acatacatag taggggcggg tcctgtgccc
     2701 gcccgactaa tattaagata acgggcgggc acaggacccg cccctacgat tagtatgtta
     2761 ggtttaaaaa tacttcatac caatatcccc taagttgggt aaaaccttat gaaataggat
     2821 acaagcggtt agtttctctc aattttttac caaaggatca cgcaatgagc caaccggctt
     2881 tacggcaaat ttccccctcg cagctagaag atattcgtct gcaaatggtg aagtttgcct
     2941 ttttacagtt aaaaaataac gaacttgccg aagatgtggt gcaagaggcg tttgtcagcg
     3001 cttataaata tgccgacagc ttcaaaggtg aaagtgcgtt aaaaacgtag atttttgcaa
     3061 ttttaaaaaa caagatcgta gatttagtga aagccaaagg caaattggtg gcagtatctg
     3121 agctgatgga agaagacgat cacgatcttg ccgataaatt gtttaacgaa aatggcggtt
     3181 gggataaaga tgcttatcaa tctaatgagt ggaagaacac cgaaagccat acctattccg
     3241 ctcaattctg gcaagtattt gaattttgcc taaataatct gccggcaaat caagcaaggg
     3301 tgtttatgat gcgttcccat ttggaaatgg aaaccgaaga aatttgcgca gaatgtgaga
     3361 tttcaccagc aaatgtgcat accttactgt atcgggcaag attgcagtta caggtctgtt
     3421 taagtcaaaa atggtttgga ggttaaatgt taaaatgtaa gcaaattacc gaattagttt
     3481 ctctgtccca agaacaaaaa ctgacattaa aacaacgtgt taatgtgcaa gttcatttaa
     3541 tgctttgttc tcgttgcaga gcctttagcc aaaactgcaa aaccgtagat aagctaatga
     3601 aagaatttaa ctcttagcgt aaaagcaagc ggtaaaattt ttaataaata ttatcagtaa
     3661 taacgagtaa caaaaattac ttatctttca atctattata agtgattttt atgtaaacgt
     3721 tccgaaaaaa tgcaaaatgt tccgaaactg tcttttaaga ctggtgtttt gaggagggaa
     3781 cactttcttt gataggggtt actattgggg cttttcgaat gtatgttttg gtcatttgaa
     3841 cgctagtatg acctagttgt tggcgagcgg cttcttcacc tagagaaagg gctttatctg
     3901 ttcctgattt agctcttaga tcccgaaatt ggaatgccat tatttcattt gcgtattccg
     3961 ggttattctt gaccgcttgt tcccgaatat aagtgaacct tttacctagt tttctagcgg
     4021 ttagcttttc ccctttctta gtgctgaata agtgtgttcc agtagctttc tccagcctat
     4081 cttggataat atcagccagt tttcccacta tctcaatacg tagtttggct tgtgtttttt
     4141 gctgaacaat atggagataa ccatcaaaaa tgtgttcttt ccggatattg accaaatcga
     4201 caggacgttg tccggtgata taggcgagat ccattaagtc tctcatatcc tgatctgcca
     4261 cttcatatac catctgaaat atattgttct caacgtaaat ttcacgcttt ctgatagggt
     4321 agcgtttcat tccgatatta gggcttggta agtttgtata accccactct cgagcgtatt
     4381 gccaaatatg actgaacatt ga
//
LOCUS       DANMBQ010000165         4348 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.166, whole genome shotgun sequence.
ACCESSION   DANMBQ010000165 DANMBQ010000000
VERSION     DANMBQ010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4348
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.166"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..152
                     /locus_tag="PXE92_002427"
     CDS             <1..152
                     /locus_tag="PXE92_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HDL5761616.1"
                     /translation="EKQLKTETPASFGSFNHPQFYQLISPNGELCIVPFQSRQHLDYL
                     AQKHH"
     gene            183..2051
                     /locus_tag="PXE92_002428"
     CDS             183..2051
                     /locus_tag="PXE92_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDL5761617.1"
                     /translation="MSGLVSPELIKTVALLATSVTIVPLFKRLGLGSVLGYLVAGCLI
                     GPSGIGLFQDPAAVVHMAELGVVMFLFIIGLEMHPELLWAMRKAIFGRGFLQVAICGT
                     LLTLAGIYLLGFSKEVAFIAGMGFTLSSTAIVMQVLEDKGISSTPKGQRIVATLLFED
                     LAIVPLLASVAFLAPNQVDAESSTNWSAIGLSLVAVLILVASGKWLMNPIFRVISKAK
                     VREMMTAAALLVVLGSALLMEISGLSMAMGAFLAGVMLSESSFRHQLEADIEPFRGLL
                     LGLFFMGVGMSLDLSLVLNNWLWLLVIVAVYVIGKGLGIFIAASITRLTLNESIVRTT
                     IMAHGGEFAFVLFSAAATAGILTPDTHATLTAAVIVSMLLSPLLILIKQGVRKKKAKN
                     ESTNMTGVELPEDLEANVLVIGFGRFNQIVCQALLAKGLSVSVIDSNTDHIRAAARFG
                     FKLYYGDGARLDVLRASGIANANCVIVGVGNPERTEKIVELIKSEYPLVPVFARTYDR
                     QSAVDLVKKHHVDYHIRETFESALALSQAAIERLGSSEEEAKQIISYVRRLDAERFNE
                     ELLHGFSAEVIRKYWVPTPWVNPQHEGSALNEETADILEELGETVEVIKVDITDKN"
     gene            complement(2211..3107)
                     /gene="malM"
                     /locus_tag="PXE92_002429"
     CDS             complement(2211..3107)
                     /gene="malM"
                     /locus_tag="PXE92_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose operon protein MalM"
                     /protein_id="HDL5761618.1"
                     /translation="MKKTLLSTAIFFAHLLVVSPSIANGSAGKSIHINSAELAQIQWQ
                     DVPFSQTVKTDLSEQHKQAFTTAFAGIASPVAAYRIPANQGTLEIEIESPVMDKNVFV
                     PTAVVLDSQFNVASTYPSSEFKLLEERGLKGSRLGAELNLTPAMNQDYIYLLIYTTQQ
                     DLAKTTMMPHPAKTYAKATGKQPPAINDIEVAHSLKGQIHINVTGSNGTKFIGLPTEI
                     FSSNKAATPAAKTAIPLPIKENPVAVKTAVDKDTEAYFNQAVMKAIKAKDINKAMNLV
                     NEAEKLGLTSPRQIFLKNVSSN"
     gene            complement(3188..>4348)
                     /locus_tag="PXE92_002430"
     CDS             complement(3188..>4348)
                     /locus_tag="PXE92_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltoporin"
                     /protein_id="HDL5761619.1"
                     /translation="FTVNGGGSKYRLGNESDTYAELKLGQELFKSGEKSIYFDTNLAY
                     GGTLHNNDWTPTSPALRELNVQFKNFADSLPGATLWAGKRFYQRHDVHMNDFYYWDIS
                     GPGAGVENIDLGFGKLSLAVTRDTERGGANTFGYTTVYKLDPSTGKIKLDKQRNKADV
                     YNDIFDVRLAGIELWKDGSLELGFDYGNAHAKKGAALEKGATKNGYMVTAEYTQGNFF
                     GGFNKFTAQYATDSMTSWNNGHAQGSKADNKGNMLRLINQGVVQASDKVEVMYALIYE
                     KTKLDNKQGKTWYSAGIRPMYKWNDTMSTLLEVGYDRIKDQATGKKNDLVKYTVAQQW
                     QAGNSIWARPAIRVFGTYARWNDKFNTKARTDAGYKAKDGEFITGVQFEAWW"
BASE COUNT         1199 a          886 c          874 g         1389 t
ORIGIN      
        1 atgaaaaaca attaaaaaca gaaacaccag catcatttgg aagctttaat catccacaat
       61 tttatcaact tatttcacca aacggtgagt tatgtattgt gccgtttcaa agccgccagc
      121 atttagatta tttagcacaa aaacatcatt aatcttattt atattataca ggtgggaatt
      181 ctatgtcagg attagttagt ccggaattaa ttaaaacagt cgcattactt gcaaccagcg
      241 tcactattgt accgctattt aaacgccttg gtttaggaag cgtattgggt tatttagtcg
      301 caggatgttt aatcgggcca tcgggcattg gattgttcca agaccctgcc gctgttgtgc
      361 atatggcaga acttggcgtg gttatgtttt tgtttattat tggtttggaa atgcacccgg
      421 aactgctttg ggcgatgcgt aaagccatct tcgggcgagg tttcttacaa gttgcgattt
      481 gcggtacttt attaacctta gccggcattt acttattagg tttttccaaa gaagtggcat
      541 ttattgccgg tatgggtttt acgctatctt ctactgccat tgtaatgcaa gtgctggaag
      601 ataaagggat aagttccacg ccaaaagggc aacgtattgt tgcaacttta ctatttgaag
      661 atttagcgat tgtgccatta ttagcctcgg ttgcctttct tgctcctaac caagtagatg
      721 ctgaatccag tactaattgg tctgctattg gtcttagcct agttgccgtt cttattttgg
      781 ttgcgagtgg aaaatggctg atgaacccta ttttccgtgt tatttctaaa gccaaagtac
      841 gagaaatgat gactgccgct gccttacttg tggtattagg ctccgctctt ttaatggaaa
      901 tcagtgggct ttcaatggca atgggggcat tccttgccgg agtaatgctt tcggagtctt
      961 ctttccgcca tcaactagaa gctgatattg aacccttccg tggtttactt ttaggcttat
     1021 tctttatggg cgtaggaatg tcattagacc tcagcctcgt cctcaataat tggctatggt
     1081 tattggtgat tgtagcagtt tatgttatcg gtaaaggcct tggaatcttc attgctgcct
     1141 ctatcacccg attaacactg aatgaatcta ttgtgcgaac taccattatg gctcacggtg
     1201 gtgaatttgc ctttgtgcta ttctcagccg ccgcaaccgc tgggatttta accccagata
     1261 ctcacgctac cttaaccgct gcggtaattg tctcaatgtt gctttcccca cttctcattt
     1321 taatcaagca aggagtgaga aagaaaaaag cgaaaaatga atccactaat atgacagggg
     1381 ttgaattacc ggaagattta gaagccaatg tattagtcat cggttttgga cgctttaacc
     1441 aaatagtctg ccaagcctta ttagccaaag gactaagtgt atcggttatt gattcaaata
     1501 ctgatcatat tcgtgctgct gctcgttttg gttttaaact ttactatggt gatggagcga
     1561 gactagatgt acttagggca tctggcatcg ccaatgcaaa ctgcgtaatt gttggcgtag
     1621 gcaatccgga aagaacggag aaaatcgtag agctgattaa atctgaatac cccttagtac
     1681 ctgtatttgc gagaacctat gatagacaaa gtgcggttga tttagtcaaa aagcaccacg
     1741 ttgattatca cattcgagaa acctttgaat cagccctcgc attaagccaa gccgccattg
     1801 aacgcttagg ttctagcgag gaagaggcaa aacaaattat cagctatgtt cgccgattag
     1861 atgcagaacg ctttaatgag gaattattac acggtttctc cgcagaagtt atccgcaaat
     1921 attgggtacc aacaccttgg gtaaatccac aacacgaagg tagtgcactt aatgaagaaa
     1981 cggctgatat tttagaagag cttggtgaga cagtagaagt tataaaagtg gatatcactg
     2041 ataaaaatta aagaatttat actttgaatc cttattcaag tataagcctt cctatacata
     2101 tcgcataatc actcgtaaaa aagcacccta tcggcataat ctgatagggt gttaatggta
     2161 ataaaccatc gcacgatgac aaggagaata tctatgaaaa aaacaataaa tcaatttgaa
     2221 cttacatttt ttaagaaaat ttggcgtgga gaagtcagcc ctaatttttc tgcctcgtta
     2281 accaaattca tcgctttatt aatatctttt gctttaatcg ctttcattac cgcctgatta
     2341 aaataggctt ccgtatcttt atctactgct gtttttactg caactggatt ttcttttatc
     2401 ggcaacggta tagccgtttt agctgccggc gttgctgctt tgtttgagct gaaaatttca
     2461 gtcggtaatc caataaattt agtgccgttc gagccggtaa cgttgatgtg aatttgccct
     2521 tttaaactgt gtgctacttc aatatcgtta attgctggtg gttgtttacc ggttgctttt
     2581 gcataggttt ttgccggatg cggcatcatc gtggttttgg ctaaatcttg ctgcgtggta
     2641 taaatgagca agtaaatata atcttggttc attgccggcg ttaaattaag ttctgcccct
     2701 aaacggctac ctttgagtcc tcgctcttcc aataatttaa actcagaaga ggggtaagtt
     2761 gatgccacat taaattgact atccaacacg actgccgtgg gtacaaaaac atttttgtcc
     2821 atcaccgggc tttcgatttc aatttccaat gtgccttgat ttgccggaat acgataagct
     2881 gcaaccgggc tggcaatacc ggcaaacgct gtggtaaatg cttgtttgtg ttgctcgctt
     2941 agatctgttt ttacggtttg tgaaaatggc acatcttgcc attgaatttg agctaattca
     3001 gccgagttaa tatgaataga cttacctgcc gagccatttg ctatactcgg agacaccacc
     3061 aaaagatggg cgaagaatat tgctgtcgaa agaagcgttt ttttcatatt aacccctaaa
     3121 aatcgtgaaa taggataaag tgctgaaata gtgggtaggt aatcctaccc acacaaaggt
     3181 ttgatgatta ccaccaagct tcaaattgaa caccggtgat aaactcgccg tctttggctt
     3241 tatagccggc atcggtacga gctttcgtgt tgaatttatc attccaacgt gcataagtac
     3301 caaacacacg gattgcaggg cgagcccaaa tgctattacc agcctgccat tgttgtgcaa
     3361 cggtgtattt taccaagtca tttttcttgc ctgttgcttg atctttaatg cgatcataac
     3421 caacttctaa taatgtactc attgtatcat tccatttgta cattgggcga atacctgctg
     3481 agtaccaagt tttaccttgt ttattatcta gttttgtttt ttcgtagatt aaggcataca
     3541 ttacttcaac tttatcactc gcttgcacta ccccttggtt gattaaacga agcatattac
     3601 ctttattatc tgctttcgaa ccctgtgcgt gcccattatt ccaagaagtc atagagtcgg
     3661 ttgcatattg tgcagtaaat ttattgaaac caccaaagaa gttaccttga gtgtattccg
     3721 ctgttaccat ataaccgttt ttggttgctc ctttttcaag ggctgcacct ttcttagcat
     3781 gtgcattacc gtaatcaaag cctaactcta acgaaccatc tttccaaagc tcaataccgg
     3841 ctaaccgaac atcaaaaata tcgttgtaaa catcggcttt attacgctgc ttatctaatt
     3901 taattttacc tgtgctagga tctaatttat aaactgtagt atatccaaaa gtattcgccc
     3961 ctccacgctc tgtatcacga gtaaccgcta aagagagttt tccgaagcct aaatcaatat
     4021 tttcaacccc tgcacccgga cctgaaatat cccagtaata gaagtcattc atatgtacat
     4081 catggcgttg gtaaaaacgt ttaccagccc ataaggtggc acctggtaaa ctatctgcaa
     4141 agtttttgaa ctgtacattt aattcacgta gtgctggact tgttggtgtc caatcattat
     4201 tgtgaagcgt accgccgtaa gcaaggtttg tatcaaagta gatagatttc tcaccacttt
     4261 tgaataattc ctgacctaat ttcaattctg cataggtatc agattcgtta cctaaacggt
     4321 attttgaacc accaccattt accgtgaa
//
LOCUS       DANMBQ010000166         4344 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.167, whole genome shotgun sequence.
ACCESSION   DANMBQ010000166 DANMBQ010000000
VERSION     DANMBQ010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4344
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.167"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..207)
                     /locus_tag="PXE92_002431"
     CDS             complement(<1..207)
                     /locus_tag="PXE92_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000214125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CmlA/FloR family chloramphenicol efflux MFS
                     transporter"
                     /protein_id="HDL5761620.1"
                     /translation="MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGIL
                     NTTPAMIQLTLSLYMVMLGVGQVIF"
     gene            complement(484..930)
                     /locus_tag="PXE92_002432"
                     /pseudo
     CDS             complement(484..930)
                     /locus_tag="PXE92_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001747810.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3363 domain-containing protein"
     gene            complement(1399..2892)
                     /locus_tag="PXE92_002433"
     CDS             complement(1399..2892)
                     /locus_tag="PXE92_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91-like element ISVsa3 family transposase"
                     /protein_id="HDL5761621.1"
                     /translation="MPHVAARTASRDRDTGRYQSHRPEQTLLYQIVDEYYPAFAALMA
                     EQGKELPGYVQREFEEFLQCGRLEHGFLRVRCESCHAEHLVAFSCKRRGFCPSCGARR
                     MAESAALLVDEVLPEQPMRQWVLSFPFQLRFLFASRPEIMGWVLGIVYRVIATHLVKK
                     AGHTHQVAKTGAVTLIQRFGSALNLNVHFHMLFLDGVYVEQSHGSARFRWVKAPTSPE
                     LTQLTHTIAHRVGRYLERQGLLERDVENSYLASDAVDDDPMTPLLGHSITYRIAVGSQ
                     AGRKVFTLQTLPTSGDPFGDGIGKVAGSSLHAGVAARADERKKLERLCRYISRPAVSE
                     KRLSLTRGGNVRYQLKTPYRDGTTHVIFEPLDFIARLAALVPKPRVNLTRFHGVFAPN
                     SRHRALVTPAKRGRGNKVRVADEPATPAQRRASMTWAQRLKRVFNIDIETCSGCGGAM
                     KVIACIEDPIVIKQILDHLKHKAETSGTRALPESRAPPAELLLGLFD"
     gene            complement(3004..3309)
                     /locus_tag="PXE92_002434"
     CDS             complement(3004..3309)
                     /locus_tag="PXE92_002434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001255015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5761622.1"
                     /translation="MRRTNHRNLVNVGILSGRIPLISLVQFIAVAEHLNFRHAAKALG
                     ISQSSVSARVKALEDNLGVLLFERHARGVRLTDAGRHFMERVTAGVDQLDHAVKTAE"
     gene            complement(3337..>4344)
                     /gene="floR"
                     /locus_tag="PXE92_002435"
     CDS             complement(3337..>4344)
                     /gene="floR"
                     /locus_tag="PXE92_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000214125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloramphenicol/florfenicol efflux MFS
                     transporter FloR"
                     /protein_id="HDL5761623.1"
                     /translation="GPLSDRIGRRPILLAGATAFVIASLGAAWSSTAPAFVAFRLLQA
                     VGASAMLVATFATVRDVYANRPEGVVIYGLFSSVLAFVPALGPIAGALIGEFLGWQAI
                     FITLAILAMLALLNAGFRWHETRPLDQVKTRRSVLPIFASPAFWVYTVGFSAGMGTFF
                     VFFSTAPRVLIGQAEYSEIGFSFAFATVALVMIVTTRFAKSFVARWGIAGCVARGMAL
                     LVCGAVLLGIGELYGSPSFLTFILPMWVVAVGIVFTVSVTANGALAEFDDIAGSAVAF
                     YFCVQSLIVSIVGTLAVALLNSDTAWPVICYATAMAVLVSLGLVLLRLRGAATEKSPV
                     V"
BASE COUNT          918 a         1339 c         1255 g          832 t
ORIGIN      
        1 aaaaatcacc tggcccacgc cgagcatcac catatagagg ctcaacgtga gttggatcat
       61 agcgggcgtc gtgttcagga tgccgggcat cgctggaacg acagggagat aaatatccat
      121 cgccagtgaa gcgaggatgt cgaaaggagc catcagcagc agtgctgccg gcagcgtata
      181 ggcccacgcg gggcgtgtgg tggtcatgaa tatgatctcc ttgcgattga tatttgttta
      241 ggcccacgcg gggcgtgtgg tggtcatgac gaatcaaccc tcgattaagg aataccgggc
      301 gacgtctgct cgtcagcaat cagatgagac tagccttaca gagcgccgca acaacaatac
      361 tggttgttgc ggcttacttg tctgctgact tggaatttcc catctgatta ctccacgctt
      421 acgaatatga attgctacat tttatccgat tatcttttgc ttcgcaatgc ggcatgggcg
      481 cactcagcgt tccagccccc tctgccgccc taactgccac gacaccgacc cgccctgcac
      541 gatgcccata acctcgcggc cgagttggcg gtcgatgatc ggccgccacg ggacaagggt
      601 gaactcatgg gatttctcga ccacggcgaa cttgccgctc gatagatgca cggttccggt
      661 aaacttgccg ctgacgctct cgccgtccgt ggcggcgcgg aacggcaggc ccttactcaa
      721 agccatatcc gatccgacgc cggctacctc gcgctcccgc aggatggcga gaaggttgcg
      781 ccggtagaag acgcggctgt cccggctgcg ggtggcgtcg ccctgttcga tatggtgctc
      841 gcggcgctgg tccatggctt cgcggacttg ttgcccgaag ccggttggcg caaggtcggc
      901 cgtctcgccg tggatcagcc gccggtccag ccaggtcgcg ccgtccgatc cgatctgttt
      961 gttcagatcg accggggaaa ggacgcgaac gctggcctga ctgtctcggc cggcgtcatg
     1021 ggcggcggca cggctgacca gatcatcggg gatgcgccat tggtcggcgt cgatccgctc
     1081 gacgataccg gcccggcgta gcgcctccag ccggcgcaca tgggcatcga catagccctc
     1141 atagtcgccg cctggaacgc ggcacgtata ggaagaataa acgccctttt cacccaagtc
     1201 caacagcttt ggaccgcagt tgactctttc gacacccctg cgatgcaacc caatccggct
     1261 gacggggagc cagcaacgct gaaaatttac cctcctcttt cccactagcg gctccttttc
     1321 cgacaaccag cacggcggat ccctgccgcg gcgctgtgaa cgcagcattt tgattggtat
     1381 cgttggcctt caggctcgtc agtcaaacag acccaggagc agctcagccg gtggcgcccg
     1441 gctttcgggt aacgccctgg tcccgctggt ttcggctttg tgcttcaggt gatcaaggat
     1501 ctgcttgatc actatagggt cttcaatgca ggcgatgact ttcatggcgc cgccgcagcc
     1561 gctgcaggtc tcgatgtcga tattgaaaac acgcttgagc cgttgcgccc atgtcatcga
     1621 cgctcgccgt tgtgctggtg ttgccggttc atcagccacc ctgaccttgt tgcccctgcc
     1681 ccgttttgcc ggcgtgacca acgcccggtg ccgactgttg ggtgcgaaca ccccgtggaa
     1741 gcgggttagg ttgactctgg gcttcggtac cagggcggcc agccttgcaa tgaaatccaa
     1801 tggttcgaaa atgacgtgcg tggtgccgtc ccggtacggc gtcttgagct ggtagcgcac
     1861 gttgccgcct cgtgttaacg acagccgctt ctcggatacc gccgggcggc tgatgtaccg
     1921 gcacagccgt tcgagcttct tgcgttcatc ggccctggcc gccacgccgg cgtgcaggct
     1981 ggacccggct accttgccaa tcccgtcacc gaacggatca ccactggtcg gcagagtttg
     2041 caaagtgaac acctttcgcc ccgcctgtga accgacagcg atacggtaag tgatcgagtg
     2101 ccccagcagg ggtgtcatcg ggtcgtcatc caccgcatcc gaggccagat agctgttttc
     2161 gacatcccgt tccagcaggc cttgccgttc cagatagcga cccacccggt gggcgatggt
     2221 gtgcgtcagc tgggtgagct ctgggctggt cggcgccttg acccagcgga aacgcgctga
     2281 gccgtgggat tgctcgacat acacaccgtc gagaaacagc atgtggaagt gaacattcag
     2341 attgagcgcc gatccaaaac gctggatcag ggtgaccgcg cccgtcttgg ccacttggtg
     2401 ggtatggccc gctttcttga ccaggtgcgt ggcaatgacg cggtaaacga tgcccagcac
     2461 ccaccccatg atctcgggcc ggctggcaaa caggaaacgc agctgaaacg ggaagctcaa
     2521 cacccactga cgcatgggtt gttcaggcag tacttcatca accagcaagg cggcactttc
     2581 ggccatccgc cgcgccccac agctcgggca gaaaccgcga cgcttacagc tgaaagcgac
     2641 caggtgctcg gcgtggcaag actcgcagcg aacccgtaga aagccatgct ccagccgccc
     2701 gcattggaga aattcttcaa attcccgttg cacatagccc ggcaattcct ttccctgctc
     2761 tgccataagc gcagcgaatg ccgggtaata ctcgtcaacg atctgataga gaagggtttg
     2821 ctcgggtcgg tggctctggt aacgaccagt atcccgatcc cggctggccg tcctggccgc
     2881 cacatgaggc atgttccgcg tccttgcaat actgtgttta catacagtct atcgcttagc
     2941 ggaaagttct tttaccctca gccgaaatgc ctgccgttgc tagacattgc cagccagtgc
     3001 ccgtcactcc gcggtcttca ctgcgtgatc gagttgatcg acacccgccg tgacacgctc
     3061 catgaagtgc ctgcctgcgt ctgttagccg aacgccccgc gcatggcgct caaatagcag
     3121 gacaccaagg ttatcctcca gcgctttcac acgcgcgctg acgctcgact ggctgatacc
     3181 aagtgccttg gccgcatgcc gaaaattcag atgctcggcg acggcgatga actgaacaag
     3241 ggaaatgagc ggtatcctgc cagacaggat accgacattc acgaggtttc gatggttagt
     3301 gcgccgcatc ggagcgggcc tgctaccagt cgtcggttag acgactggcg acttctcggt
     3361 ggcagcccca cggagccgaa ggagcaccag ccccaacgaa accagtaccg ccatcgccgt
     3421 ggcgtaacag atcacgggcc acgctgtgtc actgtttaaa agtgccaccg ccaatgtccc
     3481 gacaatgctg actatcaggc tttgaacgca gaagtagaac gcgaccgctg atcccgcgat
     3541 gtcgtcgaac tctgccaaag cgccgttcgc ggtaacggac accgtgaaga caataccgac
     3601 cgcgacaacc cacatcggta ggatgaaggt gaggaatgac ggcgagccgt aaagttcgcc
     3661 gatccccaac aggaccgctc cgcaaacaag caacgccatc ccacgcgcca cgcatcctgc
     3721 gatgccccat ctggcgacaa aggacttcgc gaaacgggtt gtcacgatca ttacaagcgc
     3781 gacagtggcg aaggcaaagc tgaatccgat ctcggaatat tccgcttggc ctatgagcac
     3841 acggggagcc gtcgagaaga agacgaagaa ggtgcccata ccggcgctaa agccgacagt
     3901 gtaaacccaa aaagccggac tcgcgaagat cggcaagaca gatcggcgcg tcttgacttg
     3961 atccagaggg cgggtttcgt gccacctgaa acccgcattt aggagtgcga gcatcgccag
     4021 tatagccaaa gtaatgaata tcgcctgcca tcccaagaac tcgccgatca atgctccggc
     4081 gatagggccg agcgcaggca cgaacgccag caccgaactg aaaaggccgt agatgacgac
     4141 accctcagga cggttggcat aaacgtcgcg aaccgtcgcg aacgtcgcca ccagcatggc
     4201 cgacgcgccc actgcttgaa gtagacggaa agcgacaaag gccggtgcag ttgaagacca
     4261 agctgctccc agagacgcaa tgacgaaagc cgttgcgccc gcaagtagaa ttggccgtcg
     4321 cccgattctg tctgagagcg gacc
//
LOCUS       DANMBQ010000167         4260 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.168, whole genome shotgun sequence.
ACCESSION   DANMBQ010000167 DANMBQ010000000
VERSION     DANMBQ010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4260
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.168"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(94..804)
                     /locus_tag="PXE92_002436"
     CDS             complement(94..804)
                     /locus_tag="PXE92_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761624.1"
                     /translation="MWKKIRIDFTDTVKCQFCSRMITSGKAIVVQNELGNISFSGPSC
                     AQNKNGQNVVNPKEKIVDITKGCLLHEPTTNDKTDKQVDVEQDNFTSIHDDEVHNYLD
                     NNAVNAYLTLRFEKLSHLTSIIKSQKLNEIYHNYELTGQISQKDESYIRVIMYGEAYP
                     LYTYQNLQAVYAAEYWLQSFIQHNPENDLNFIQDTLNQLRRKLTLTEKQIMGINNWFK
                     NSDGKMVKLKTNAFVRGK"
     gene            1281..1799
                     /locus_tag="PXE92_002437"
     CDS             1281..1799
                     /locus_tag="PXE92_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5761625.1"
                     /translation="MRYIKYSLFLVSTMLISGCAELSAINDKVGDWAGQMNQTLYGSK
                     DGSVEQHNGRQVYTKTRNGKYVYQDSGTLQLKRNIDDVFLKVRREFGFRPTNADSDSR
                     KVYHTVQGTFYHVSGYFESDVDTDGVHLGENYLEVIIEKGSKNQVNVEWKATGSARWL
                     DSAKQRLLNTLK"
     gene            1959..4010
                     /locus_tag="PXE92_002438"
     CDS             1959..4010
                     /locus_tag="PXE92_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL5761626.1"
                     /translation="MKLFICEKPSQARDLAGVLGATSKGEGLLATADKSIIVTWGFGH
                     LVEQYQPEDYDEAWKRWAFETLPIIPAQWKMTPKKESKKQYSVVIGLIKKATSVVIAT
                     DADREGEMIARELLDLAGYRGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMG
                     RSRSDWLIGMNFSRLFTLMAQAKGYSGKPLSVGRVQSPTLTLVVNRDREIANFVPKSH
                     YALAVQLTTTSGETFVAGLAVPEQYLDESGLCLDSRVIQQAEAQIKQTGLAKVVTVET
                     KREKKSPPLLYALSDLQGECNRLFGFGAQQVLDIAQSLYEEHKITTYPRTDCGYLPES
                     QFSDVPNVIRSLVASDSGLQTLLPKLNLRQKSRAWDDKKITAHHGIIPTIKKADLSKL
                     SEEEMKVYDLIRRRYLAQFLPHLEMDKTVATLQSSGHTLVARGNVIVAQGWRILFGKN
                     VDEETGNDDEKQGLPVLTKNQQCNVTHSEVRTLQTKPPAHYTEGTLLDAMKNAARFVT
                     DPRLKQRLRETEGLGTEATRAGLIQGLIDKGFLLKKKKSLVASAEAVALIDSLPDLLK
                     NPGLTALWEQALNQIAEGSMTLDAFMQKQEAFVKQLIGSCMQQGMSLGNIEIRKCSEC
                     GKPMRKINHAKGTFWGCTGYPDCQHKEADKKVKSASNKSAKKSSNLNVLDQLNKLRSQ
                     L"
     gene            complement(4071..4208)
                     /locus_tag="PXE92_002439"
     CDS             complement(4071..4208)
                     /locus_tag="PXE92_002439"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761627.1"
                     /translation="MTLQSRFRQLQQTNVAGIIHLMFSWHSHKVEFPLRMLGDILAGV
                     D"
BASE COUNT         1337 a          812 c          843 g         1268 t
ORIGIN      
        1 aaataagcaa gcaaataata ggaaagagtc ttttaaaacc agtcttacgt cgggcctacg
       61 taacaaaata agtggccacc acaattatgt taactatttc cctcttacaa aagcatttgt
      121 ctttaatttc accatttttc catcagaatt cttaaaccaa ttatttatgc ccataatctg
      181 tttttcagtt aatgttagct ttcttctgag ctgatttaat gtgtcttgta taaaatttaa
      241 gtcattctct ggattatgct gaataaatga ttgaagccaa tattcagcag cataaacagc
      301 ttgtaagttt tggtatgtat acaaaggata tgcctcacca tacataatca ctcttatgta
      361 actttcatct ttttgagata tttgccctgt aagttcatag ttatgataga tttcatttaa
      421 cttttgagat tttataatcg aggttaaatg cgatagtttt tcaaatctta aggtcaggta
      481 tgcattaaca gcattattgt ccaaataatt atgtacttcg tcatcgtgta tggatgtgaa
      541 attatcttgc tcaacatcta cttgcttatc cgttttatca tttgttgttg gctcatgaag
      601 taaacatccc tttgtgatat caactatttt ctctttagga ttgactacat tctgaccgtt
      661 cttattttga gcacaagacg gtcctgaaaa agagatattg ccaagttcat tttgaacaac
      721 aatagctttg cctgatgtaa tcattctact gcaaaattga catttcactg tatcagtaaa
      781 atcaatccta atttttttcc acataacata tctctccata tagtgagtaa taaaaatact
      841 tcttaactct cttcattgat gaaataattg caaaaataac tttgatagag gataaatata
      901 tgaatttccc tccaactcga tggaaaatat tacaccagta tcaaactgag ctagagctct
      961 gggttgaaca agccacagaa gagcatatca agcaatactt gactgaaatt cacggatgtg
     1021 tatacccaga tgactgggaa aatgtgcgta tatcccatat gtcatctcaa actcatattt
     1081 tccatagctg tgaacgttgc ctagaactta tctctgcgat attaacaatc tcacaactaa
     1141 gcagacccga tctaaatggt ctactgtgtg acagaaagct ataatatttt ttctctttgt
     1201 aagtaaaaga gttttaagta gattttaacc gcacttttgc aaaaaatgaa cgcagataac
     1261 ccgcttgtaa ggagaattct atgcgttaca tcaaatatag tttatttctt gtttctacaa
     1321 tgctaatttc aggctgtgct gaactctcag caattaacga taaggttggg gattgggccg
     1381 ggcaaatgaa tcagacgctc tatggctcta aagacggctc tgttgaacag cataatgggc
     1441 gacaagttta tactaaaacc cgaaatggta agtacgttta tcaagattcc ggcacattgc
     1501 agttgaagcg gaatattgat gatgtattcc tgaaagttcg tcgggaattt ggcttccgcc
     1561 caacgaatgc tgatagtgac tcccgtaaag tttatcatac ggtacaaggt actttttacc
     1621 atgtttccgg ctattttgaa tctgatgtag atactgatgg ggtacactta ggtgaaaact
     1681 acttggaagt tatcattgaa aaaggcagta aaaatcaggt gaatgttgaa tggaaagcaa
     1741 ctggtagtgc tagatggctc gatagtgcaa aacagcgttt acttaataca ttaaaataat
     1801 aactcatatt gctcctagaa cctcttccca gtggaaacac tgggattttt tatgtcctta
     1861 tttctcaaat tattacatcc tacgagacaa taagtcgttg aatgctattt aatcagcaca
     1921 ttactatttg cctatctgta ttcattttag gaaataatat gaaattattt atttgtgaaa
     1981 agccatctca agctcgagat cttgccggcg tattgggtgc tacttcaaaa ggtgaaggct
     2041 tgctggcgac tgcggataaa tctattattg tcacttgggg gttcgggcat ctcgttgagc
     2101 aatatcagcc ggaagattat gatgaagcgt ggaaacgctg ggcatttgaa acattaccca
     2161 ttattcctgc tcagtggaaa atgacaccga aaaaagagtc taagaagcaa tattctgttg
     2221 taatagggct tatcaaaaaa gcaacctccg tggtcattgc gaccgatgct gatcgagaag
     2281 gtgagatgat tgctcgtgag ctgttagatt tagctggata ccgaggtcaa atccaacgtt
     2341 gctggctatc agctctggat gatgccagta ttcgaaaggc tcttcaaaca ctcaaatcag
     2401 gtaaagaaac cgaggctctt tactacgccg gtatgggacg tagccgctcg gactggttga
     2461 ttggaatgaa cttctcccgt ttatttacct taatggctca agcaaaaggc tattccggta
     2521 agccattgag cgttggtcga gtacaaagtc caacattaac tcttgtggtt aatcgagata
     2581 gagaaattgc taatttcgtg cctaaatctc attatgcgtt agcggttcag ctgacaacaa
     2641 cctctggtga aactttcgtt gccgggcttg cagtacctga acagtatttg gatgagtccg
     2701 gactttgcct tgatagtcgt gtcatacaac aagccgaagc tcaaattaaa caaacaggct
     2761 tagccaaagt ggtgacggtt gaaactaaac gagagaaaaa atctccaccg ttactctacg
     2821 cattaagtga tttacaaggc gaatgtaacc gcttgtttgg ctttggggct cagcaggtgt
     2881 tggatatcgc acaatccctt tacgaagagc ataaaatcac gacttatccc cgtacagact
     2941 gtggttatct gccagaatca caattttctg atgttcctaa cgtaatccgc tcattagttg
     3001 cctctgattc agggctacaa actctcttgc ctaaattaaa tttgcgacaa aaaagtcggg
     3061 cgtgggacga taaaaaaatt accgctcacc acggtattat cccaaccatt aaaaaagctg
     3121 atttaagtaa attgagtgag gaggaaatga aggtctatga tctcattcgc cgccgatatc
     3181 ttgctcaatt cttaccgcac ttggaaatgg ataaaaccgt tgccactctg caatctagtg
     3241 ggcacactct ggttgctcgg ggaaatgtca tcgttgctca aggctggcgt atcttgtttg
     3301 gcaaaaatgt ggatgaggaa actggtaatg atgatgagaa acaaggatta cctgtattga
     3361 ctaaaaatca gcaatgcaat gtcactcatt ctgaagtccg aacattgcaa actaaacctc
     3421 ccgcacacta tacagagggg acattactcg atgcaatgaa aaatgccgct cgctttgtga
     3481 ctgacccaag actcaaacaa cgcttacgtg aaacggaagg tttaggcaca gaagcaaccc
     3541 gtgccggatt aattcaaggc ctaattgaca aaggatttct ccttaagaag aaaaaatcac
     3601 tggttgcctc agcagaagcc gttgccttaa ttgatagttt gccggactta ctgaaaaatc
     3661 ccggtttaac ggcattatgg gaacaagccc tcaatcagat tgccgaaggt agtatgacac
     3721 ttgatgcatt tatgcaaaag caagaagcat ttgtaaaaca acttatcggc agttgtatgc
     3781 aacagggaat gtcacttggg aatattgaaa tccgaaaatg ttcagaatgt ggtaagccaa
     3841 tgagaaaaat caatcacgct aagggaacat tctggggatg tactggttat ccagattgcc
     3901 aacataaaga ggctgataaa aaggtaaaat cagcttcaaa taaatctgct aagaaaagta
     3961 gtaatttaaa tgtactcgat caactgaata aattaagaag ccagttataa attcaagtag
     4021 attatggtat tatcaaggaa caaagaaccc gttttgtaga ttgtcggtta tcaatctaca
     4081 ccagccaaaa tgtctcccag cattctgaga gggaactcca ctttgtggga atgccaacta
     4141 aacattaaat ggataatgcc agccacatta gtctgttgta attgtctaaa tcgtgattgc
     4201 aacgtcataa tattacccga ttggggggat tatgacgttg caattactgc taactattct
//
LOCUS       DANMBQ010000168         4231 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.169, whole genome shotgun sequence.
ACCESSION   DANMBQ010000168 DANMBQ010000000
VERSION     DANMBQ010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4231)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4231)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4231
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.169"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..105
                     /locus_tag="PXE92_002440"
     CDS             <1..105
                     /locus_tag="PXE92_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin"
                     /protein_id="HDL5761628.1"
                     /translation="LERITKEFDYDPMTNWRVLKHVRGFDPAFKKPTF"
     gene            339..1244
                     /locus_tag="PXE92_002441"
     CDS             339..1244
                     /locus_tag="PXE92_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HDL5761629.1"
                     /translation="MQFQEHNNRKKADKFAEYITGEALRRYVAEKVKQYARNNVSVFD
                     GAAGSGQLEQFVRPTSFTAVEVQSESCDVLRHNFPTAQIYNQSFFLYPNGEPCDCVIM
                     NPPFSLKFKDLSQAEQAQIQSEFPWKKSGVVDDIFVLKGLANSHQWGFFILFPGVGYR
                     QTEKRFREEVGNQLVELNRIQNAFEDTPIEVLFLVVDKTKTTDDCSRELIDCAGGQIQ
                     QICADKWKIRPDHWESIQPPPPPQEEIKPLELEAFAREQAIERIVGEVRLSKLIAEFF
                     EPELRRTFNAFIDDICVAVQAEKIV"
     gene            1241..2560
                     /locus_tag="PXE92_002442"
     CDS             1241..2560
                     /locus_tag="PXE92_002442"
                     /inference="COORDINATES: protein motif:HMM:NF024795.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hint domain-containing protein"
                     /protein_id="HDL5761630.1"
                     /translation="MNNIIKFTYGSICSGIEAASVAWHDIGTPLWFSEIEPFPCAVLA
                     HRFPDVPNLGDMTALPEKILNRKIPAPDVLVGGTPCFTAGHMVLTDKGYMPIETLSVG
                     DLVVTHKGQLKPILRVGSEIKPVGKLTAVGLPESIVCTPEHPFYAQKWQTINTKRNGK
                     YHRKTIISKPEWIEAHKLEGYQWVSLTDFSVMPYGGFHSKLTDDEVLLIAGYYLGDGW
                     IRRWKGKNKKAVVISVNKEKYRKFSLSFAKLPHHITTENNSVIKITICDTELADFLYS
                     QFGEKAGGKTIPAWCLSHSFRSKIFEGYMITDGSFRNGVYTANSISKSLAYGIAALSQ
                     TLGYISSVSKVTVAPTKEIQGRIVNQNDYYQMRAFLQSTSRKSRLDENRLLRSVQSFE
                     ITGNEVVYNIEVADDNSYILNNAVVHNCQSDKGGTVKASGGGFEWRE"
     gene            2481..3077
                     /locus_tag="PXE92_002443"
     CDS             2481..3077
                     /locus_tag="PXE92_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017807451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HDL5761631.1"
                     /translation="MPLSITANLTKAVQLKHQGEALSGGSETLVVHGTQDPIISQNKA
                     HCLGRNNGQENVLFEVKGAEAVRISEIQDKTPTLKARMGTGGNNIPCIALAGNTIGRQ
                     PQNDGNGNVFDESGVSYMLTRTDVHAVSAGTTIRKLTPTECERLQGFPDGWTKITYRG
                     KSAEECPDSPRYKAIGNSMCTNVMKWIGERLSAYLTSQ"
     gene            3055..3561
                     /locus_tag="PXE92_002444"
     CDS             3055..3561
                     /locus_tag="PXE92_002444"
                     /inference="COORDINATES: protein motif:HMM:NF024784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HDL5761632.1"
                     /translation="MRILPRNENYAATENGEIFSFLSNKILKPRPLKNGYLRVQLVDE
                     NGVKDYLIHRLVCETFHGYPDLHVNHKDRDKTNNRPENLEWCTRSENMLHCSRLGGFS
                     KQSERMKKMNIESCSVPVAAITLDGKLFKKYTSMTSAGKDGFSHSKISLCIQGKRKTH
                     KGYIWQKL"
     gene            3651..3926
                     /locus_tag="PXE92_002445"
     CDS             3651..3926
                     /locus_tag="PXE92_002445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HDL5761633.1"
                     /translation="MEQPTEFLTKDELADLTGYRQKKRQIEWLRERHYIIQDENKYKP
                     LVLYKDVYGHPRQQYPEAQSTGKWKSPAYLMGVKNGKTTQTTESLLT"
     gene            3886..>4231
                     /locus_tag="PXE92_002446"
     CDS             3886..>4231
                     /locus_tag="PXE92_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase Arm DNA-binding
                     domain-containing protein"
                     /protein_id="HDL5761634.1"
                     /translation="MGRPRKQQNRYLPENLRPKTVTRKSGKTVIYWLYRTHGKTEISL
                     GTNRNEAFIKAAQLNIERESQTARITFGLVAKRYRDEVIPQKKASTAQTDLCKIKNLL
                     LFFNDAPLEEITP"
BASE COUNT         1371 a          856 c          907 g         1097 t
ORIGIN      
        1 cttgaacgga ttaccaaaga atttgattac gacccgatga caaactggcg agtactcaaa
       61 cacgttcgag gtttcgaccc ggcatttaaa aagccaacgt tctaatcaca aaaaattata
      121 aaacccgacc gcttgcgaaa catcaagcgg cggtttcctg cacccaaatt ttgaggatta
      181 gacgatgaaa tacgcaaaaa tcatactctt tttaaccgcc tttgcagttg ctgctgacca
      241 tctagagtta cgcaacgact gcgatggcaa aatttgtaca gctcaacgct aattaaccca
      301 accgcttgtt ccgcaagcgg ttattttttg gaggaaaaat gcaattccaa gaacacaata
      361 accgcaaaaa agccgacaaa ttcgctgaat acatcacagg tgaagctcta cgccgttatg
      421 ttgctgaaaa ggtcaagcag tatgccagaa ataatgtttc tgtttttgac ggggcggcag
      481 gttctgggca gttggagcaa tttgtccgcc caacctcttt tactgcggta gaggtccaat
      541 ccgaaagctg cgatgtgtta cggcacaatt tccctacggc tcaaatctat aatcagagct
      601 tctttctcta tcctaacggc gaaccgtgcg attgcgtgat tatgaatccg ccattttccc
      661 ttaaatttaa ggatttaagc caagccgaac aagcacaaat tcaatccgaa tttccgtgga
      721 aaaaatctgg ggtggttgat gatattttcg tcctaaaagg actggcaaat agtcaccaat
      781 ggggattttt cattctcttt cccggcgttg gctaccgcca aacagaaaaa cgctttcgag
      841 aagaagttgg caatcaactt gtagaactca accgcatcca aaacgccttt gaggataccc
      901 cgattgaagt cctattcttg gtggtagaca aaaccaaaac gaccgatgat tgctctcggg
      961 agttaatcga ttgtgctggt gggcaaattc aacaaatttg tgctgataaa tggaaaatta
     1021 gacctgatca ttgggaaagt atccaaccgc caccaccgcc acaagaagag ataaaaccgc
     1081 ttgaattaga ggcgtttgcc cgagagcaag cgattgaacg aattgtcggc gaggttcgct
     1141 tatccaagct gatcgcagaa ttttttgaac cagaattacg ccgcactttt aacgcattta
     1201 ttgatgatat ttgcgttgcg gtgcaggcgg agaagattgt atgaacaaca taataaaatt
     1261 cacctatgga tctatctgct ccggcattga ggcagcaagt gtagcgtggc acgacatcgg
     1321 tacgccgtta tggttcagcg agattgagcc gtttccgtgt gcagtgcttg ctcaccgttt
     1381 ccccgatgtg ccgaacttgg gcgatatgac cgccctacct gaaaaaatcc tcaatcgtaa
     1441 aattcctgct cctgatgtgt tggttggggg tacgccttgc tttaccgctg ggcatatggt
     1501 tttaacggat aaaggatata tgccaatcga aacactttct gtcggagatt tagttgttac
     1561 tcataaagga caactaaaac ctattttgcg tgttggcagt gaaataaaac cagttggaaa
     1621 attaacggct gttggcttac ctgaatcaat cgtttgcacc cctgaacatc ctttttatgc
     1681 tcaaaaatgg caaacgataa acaccaaaag gaatggaaaa taccatagga aaactatcat
     1741 ttccaaacct gagtggattg aggctcataa gctagagggc tatcaatggg tatcattaac
     1801 tgatttttca gttatgccct atggtggttt tcatagcaaa ctgactgatg acgaagtcct
     1861 tctaattgcc ggttattatc ttggtgatgg ctggataaga agatggaaag gcaaaaataa
     1921 aaaagctgtt gttatttctg taaataaaga gaaatatcgg aagttttctc tttcttttgc
     1981 caaacttcct catcatatta ctaccgaaaa taattcggta attaaaatca ctatttgtga
     2041 cactgaactt gctgattttc tttattcgca atttggtgag aaagccggcg gaaaaactat
     2101 accggcttgg tgtttatctc attctttcag aagtaaaatt tttgaagggt atatgattac
     2161 cgatggctct tttagaaacg gagtttatac cgcaaatagc atttcgaaat cccttgctta
     2221 cggcattgct gcattatccc aaaccttagg atatatctca tctgtttcca aagtaactgt
     2281 tgctccgaca aaagaaatcc aaggaagaat tgtcaatcag aatgactatt atcaaatgcg
     2341 agcgttcctc caatcgacat caagaaaaag tcgccttgat gaaaatagat tattgagaag
     2401 cgtgcaatcc tttgagataa ctggaaatga agttgtttat aacattgagg tggcagatga
     2461 caacagctac atcttaaata atgccgttgt ccataactgc caatctgaca aaggcggtac
     2521 agttaaagca tcagggggag gctttgagtg gcgggagtga gacgctagtt gttcacggta
     2581 cgcaagatcc aattatcagc caaaacaaag ctcattgttt aggtcgaaac aacgggcaag
     2641 agaacgtctt atttgaagta aaaggtgctg aagctgtacg aattagcgaa attcaggaca
     2701 aaacgccaac actgaaagca agaatgggga cgggtggaaa taatatccct tgtattgccc
     2761 ttgccggtaa tactatcggc agacagccac aaaacgacgg aaacggcaac gtatttgatg
     2821 agagtggtgt aagttacatg cttacccgaa ctgatgttca cgctgtcagt gctggaacaa
     2881 ctattcgaaa acttactccc accgaatgcg agagactaca aggctttcca gacggctgga
     2941 cgaaaatcac ataccgtggc aaatctgccg aagaatgccc tgatagccca cgatataagg
     3001 cgataggaaa ttcgatgtgt acaaatgtaa tgaaatggat aggagagaga ttaagtgcgt
     3061 atcttacctc gcaatgaaaa ctatgcagct accgagaatg gagaaatttt tagtttcttg
     3121 agcaacaaaa tcttaaaacc tagaccttta aagaatggtt atttaagagt tcagcttgta
     3181 gatgagaatg gagtaaaaga ctatttaatc catagactgg tatgcgaaac ttttcacggt
     3241 tatccagatc tacatgtaaa tcataaggac agagacaaaa caaataaccg acctgaaaat
     3301 ttagagtggt gtacacgctc agaaaatatg ttgcattgct caagacttgg aggttttagc
     3361 aagcagtccg agaggatgaa aaaaatgaat attgagagtt gctcagttcc tgttgccgca
     3421 ataactctgg acgggaaatt attcaaaaaa tacacctcaa tgacaagtgc aggtaaagat
     3481 ggtttctcac attcaaaaat cagcctttgc attcagggta aacgcaaaac gcacaagggt
     3541 tacatatggc aaaagttata atggccgtcc cttgtatgcg gtggatagga caaaggctta
     3601 acgattattt aactcaatcc ctctaaatga gggggttatt tggagagaat atggaacaac
     3661 ctactgaatt tttaacgaaa gacgaacttg ctgatttaac aggctatcgt caaaagaaaa
     3721 gacaaatcga atggttgagg gagcgtcact atataattca agatgaaaac aagtataagc
     3781 cattagtgct atacaaagat gtctatgggc acccccgcca acaatatcca gaagctcaat
     3841 ccactgggaa atggaaatca cctgcttatt taatgggagt gaaaaatggg aagaccacgc
     3901 aaacaacaga atcgctactt acctgagaat ttacgtccaa aaacagttac acgaaaatca
     3961 ggcaaaactg tcatttattg gctatatcgc acgcacggaa aaacggaaat ctctctaggc
     4021 acaaatagaa atgaggcttt tattaaggct gctcaactca atatagaaag agaaagccaa
     4081 actgccagaa ttaccttcgg gcttgtagcc aaacgttatc gagatgaagt tatacctcag
     4141 aaaaaagcga gcacagcaca aacagatttg tgcaagataa aaaatctact gctattcttt
     4201 aatgacgctc ctctcgaaga aatcacccct c
//
LOCUS       DANMBQ010000169         4136 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.170, whole genome shotgun sequence.
ACCESSION   DANMBQ010000169 DANMBQ010000000
VERSION     DANMBQ010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4136
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.170"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            95..2029
                     /gene="iolD"
                     /locus_tag="PXE92_002447"
     CDS             95..2029
                     /gene="iolD"
                     /locus_tag="PXE92_002447"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HDL5761635.1"
                     /translation="MQTTRLTVAQALVQFLDNQYLDVDGKEIKFVHGVAAIFGHGNVL
                     GIGQALAQNAGGLTLYQGRNEQGMAHLAMGFAKQNLRQRIIACTSSVGPGAANMVTAA
                     ATATANRIPLLLLPGDVFATRQPDPVLQQIEQPYDLSISTNDAFRAVSKYWDRVQRPE
                     QLMSACINAFRVLTDPAETGAVTIALPQDVQAESFDFPNSFLQKRVHRLERTPPTTAM
                     IKQAVTLIQTKKKPLIVCGGGVRYSQAGQILQKFAKQFGIPFAETQAGKSAVVSDHAL
                     NVGGVGETGCLAANRLAKEADLVIGIGTRYTDFTTSSKWIFQNPNVQFLNINVARFDA
                     YKLDGVQLVADAKTALEALSQAIPTDYQAQWENEISQAKADFADEIQRLRAVQYHPDF
                     TPEINDNLDHKAVHNEFIQLTGSQLTQTQVLGIVNETIDNNAIIVAAAGSLPGDLQRT
                     WLSKGEETYHLEYGYSCMGYEVSAAVGVKIARPEQEVYALLGDGSYLMAHTELVTSIQ
                     EGKKINVVLFDNMANGCINNLQIGNGMDSFGTEFRFRNGETNQLNGGLVPIDFAKNAE
                     AYGCKTYRVTNEAELRAALDDAKKQTVSTLIDIKVLPKTMAHGYGCWWHVGVAEVSES
                     ERIQQARQRSEEQLAKARKY"
     gene            2156..3052
                     /gene="iolE"
                     /locus_tag="PXE92_002448"
     CDS             2156..3052
                     /gene="iolE"
                     /locus_tag="PXE92_002448"
                     /EC_number="4.2.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011817366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="myo-inosose-2 dehydratase"
                     /protein_id="HDL5761636.1"
                     /translation="MKAENIQLGIAPIGWTNDDLPELGAENTFEQCVSEMALAGYTGC
                     EVGNKYPRDVAVLKHKLDVRGIQICNAWFSTFFVDGKREETIAEFIKHRDFLHAMGAK
                     VIGCSEQSRSIQGTTKSVFKEKPIFNDEDWKRMAEGYNELAKLAAEKGMKVCLHHHMG
                     TGIQTPEEVDRYMAEVNDDVYLLFDSGHLYYSEGCQKAMLGVLEKYIDRIIHVHLKDV
                     RDEVMAEVKAKDLSFLEGVKKGTFTVPGDGVIDFRPIFDILEKHDYKGWMVVEAEQDP
                     ALANPFEYALKGRKYIRETAGV"
     gene            3054..4064
                     /gene="iolG"
                     /locus_tag="PXE92_002449"
     CDS             3054..4064
                     /gene="iolG"
                     /locus_tag="PXE92_002449"
                     /EC_number="1.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol 2-dehydrogenase"
                     /protein_id="HDL5761637.1"
                     /translation="MLKVGIIGAGRIGRVHSESISKYVKGAEIKAISDVKITEELTAW
                     AKSMGIPEVYDDYKKILQDPEIDAVLVCSSTNTHAPISIEAAQAGKHVFCEKPVDADP
                     AKIREVLSAVEKAGVKFQVGFNRRFDHNFKAIKDRVAAGDIGEPHVIRVTSRDPEAPP
                     IEYVKVSGGMFFDMTIHDFDMIRYLSGSEVEEVFAVGTVLVNPEIGKAGDIDTAVITL
                     KLKNGAIGVIDNSRKAAYGYDQRAEVFGSKGAIHITNDTGSTAVFSGENGVVAEKPKY
                     FFLERYMQSFADEISCFVDSVVNDKPTLVNGNDGLQPVLIALAAKKSLEENRPVKLSE
                     VA"
BASE COUNT         1206 a          905 c         1017 g         1008 t
ORIGIN      
        1 ttccttgcta ttataaatga aataaatttt tcatttgtaa aaatcagtag aaaaccgacc
       61 gcttgcaaaa gcgatgtaag ccagaggagg ctttatgcag actactcgtt taacggttgc
      121 acaggcgtta gtgcaatttt tggataatca atatttagac gtggacggca aagagattaa
      181 attcgttcac ggtgttgccg ctattttcgg ccacggcaat gtgctgggaa taggtcaggc
      241 gcttgctcaa aatgccggtg gtttaacgct ctaccaaggc agaaatgagc aaggtatggc
      301 acatttggcg atgggctttg ctaagcaaaa tctgcgtcaa agaattattg cctgtacttc
      361 ctcggtcggg ccgggggcgg caaatatggt tacggctgcg gcaacggcaa cagcgaaccg
      421 tattcctctt cttttattac cgggcgatgt gtttgcgacc cgccagccgg atccggtact
      481 gcaacaaatc gaacaacctt acgatttaag cattagcact aacgatgcgt tccgtgccgt
      541 cagtaaatat tgggatagag tgcaacgccc tgagcagtta atgagtgctt gtatcaatgc
      601 gtttcgtgtg ctgaccgacc ctgctgaaac cggtgctgtc accattgctc tgccgcaaga
      661 tgtacaagcg gagagttttg atttcccgaa cagcttcctg caaaaacgag tgcatcgctt
      721 agagcgtaca ccgccgacaa cagcgatgat taagcaagcg gtaacattaa ttcaaaccaa
      781 gaaaaaaccg ctgattgtct gcggtggcgg tgttcgctac tcgcaagcgg gtcaaattct
      841 gcaaaaattt gctaaacagt tcggcattcc atttgctgaa acccaagcgg gtaaaagtgc
      901 ggtggtgtcc gatcacgcat tgaatgtagg cggagtggga gaaaccggtt gtttagcggc
      961 aaaccgtctg gcaaaagaag cggatttagt gattggcatt ggtacacgct acaccgactt
     1021 cacgacttct tccaaatgga ttttccaaaa cccaaacgtg cagtttttga acattaatgt
     1081 ggcacgtttt gatgcgtaca aattagacgg cgtgcaactg gttgccgatg caaaaactgc
     1141 attagaggcg ttaagccaag ccattcctac tgattatcaa gctcaatggg agaatgaaat
     1201 ttcacaggcg aaagcggatt ttgctgatga aattcaacgc ctgcgcgctg tgcaatatca
     1261 ccctgatttc acccctgaaa ttaacgataa tcttgatcat aaagcggttc acaatgaatt
     1321 tattcagctc accggttccc agctcaccca aacccaagtg ctgggtattg tgaatgaaac
     1381 cattgataac aatgcgatta ttgttgccgc cgccggaagt ttgccgggtg atttacaacg
     1441 cacttggtta agtaaaggtg aagagactta ccaccttgaa tatggctact cctgtatggg
     1501 ctatgaagtg agtgcggcag tcggcgtgaa aattgcccgc cccgaacaag aggtctatgc
     1561 cttgctgggg gacggctctt acttaatggc acacaccgaa ttagtgacct caattcaaga
     1621 gggcaaaaaa atcaacgtgg tgctgttcga caatatggca aacggctgta tcaacaacct
     1681 gcaaatcggc aacggtatgg acagtttcgg tacggaattc cgcttccgca atggcgaaac
     1741 taaccaactc aacggcggtt tagtgccgat tgattttgcc aaaaacgccg aagcatacgg
     1801 ctgcaaaacc tatcgggtaa ctaacgaagc cgaattgcgt gccgcccttg atgatgcgaa
     1861 aaaacagacc gtttctacct taatcgatat taaagtgttg ccgaaaacaa tggctcacgg
     1921 ctatggctgc tggtggcacg ttggtgtcgc ggaagtgtca gagagcgagc gtattcaaca
     1981 agcccgccaa cgctccgaag agcagttagc taaggctcgg aagtattagt taaaaaaaca
     2041 actccccact ttgagctacg aggggagaat atcaagcggt caaatttgca aaatttttga
     2101 taaaaataac cgcttgcatc caaatttatc tctataaatc aaacgaggtt tctctatgaa
     2161 agctgaaaac attcaattag gcattgcccc aatcggttgg acgaacgatg acctgccgga
     2221 actgggagcg gaaaacactt tcgagcagtg tgtgagtgag atggcacttg ccggctacac
     2281 gggctgtgaa gtgggtaata aatatccgcg tgatgttgcc gtgttaaaac acaaactgga
     2341 cgtgcgtggc attcaaatct gtaatgcgtg gttcagcacc ttctttgtgg acggtaaacg
     2401 ggaagagacc attgccgagt tcatcaaaca tcgtgatttc ttgcatgcaa tgggggcaaa
     2461 agtgatcggc tgttccgaac agagccgtag tattcaaggc acaaccaaat ctgtgttcaa
     2521 agaaaaaccg attttcaacg atgaagattg gaaacgtatg gcagaaggct ataacgaatt
     2581 ggcgaaactt gccgccgaaa aaggaatgaa agtctgcctg catcaccata tgggaaccgg
     2641 tattcaaaca cccgaagagg tcgatcgcta tatggcagaa gtgaatgacg atgtctatct
     2701 gttgttcgat tcagggcatt tgtactattc cgaaggctgc caaaaagcga tgctcggcgt
     2761 actggaaaaa tatatcgacc gtattatcca cgttcactta aaagatgtgc gtgatgaagt
     2821 catggcggaa gtaaaagcaa aagatttaag ctttttagaa ggcgtgaaaa aaggcacctt
     2881 tactgtaccg ggcgatggtg tcattgattt ccgtccgatt ttcgatattt tagaaaaaca
     2941 cgactacaaa ggctggatgg ttgtagaagc cgaacaagat ccggcacttg ccaacccgtt
     3001 tgaatacgcc ctcaaaggca gaaaatatat ccgtgaaacc gcaggagttt aatatgttaa
     3061 aagtaggtat tattggtgca ggccgtattg gacgtgtgca ttctgaaagt attagcaaat
     3121 atgtcaaagg tgctgaaatc aaagcaatct ctgatgtaaa aattaccgaa gaattgaccg
     3181 cttgggcaaa atcgatgggt attccggaag tttatgatga ctataaaaaa atcctgcaag
     3241 atccggaaat tgatgctgta ttggtctgct cttccaccaa cactcacgct ccgatttcga
     3301 ttgaggcagc acaggctggc aaacacgttt tctgtgaaaa accggtagat gcagacccag
     3361 ctaaaatccg tgaagtattg agtgcagtcg aaaaagccgg tgtaaaattc caagtgggct
     3421 ttaaccgccg cttcgaccac aacttcaagg cgattaaaga ccgtgtggcg gcaggcgaca
     3481 tcggcgaacc gcacgttatc cgagtaacct ctcgtgatcc ggaagccccg ccaatcgaat
     3541 atgtgaaagt ctccggcgga atgttctttg atatgaccat tcacgacttc gatatgattc
     3601 gttatttatc cggcagcgaa gtggaagaag tgtttgcagt cggcaccgta ttagtaaacc
     3661 ctgaaatcgg caaagcgggc gatattgata ctgccgttat cacgttgaaa ctgaaaaacg
     3721 gagcaatcgg cgtaatcgac aacagtcgca aagctgccta cggctacgac caacgtgcgg
     3781 aagtgttcgg ctcgaaaggg gcaatccata tcactaatga taccggctca actgccgtat
     3841 tctcaggtga aaacggcgtg gtggcggaaa aaccaaaata cttcttctta gaacgttata
     3901 tgcaatcttt cgccgatgaa atcagctgtt tcgtagattc tgtggtaaac gacaaaccaa
     3961 cgttagtaaa cggcaatgac ggcttacaac cggtacttat tgccttagct gcgaaaaaat
     4021 cactggaaga aaaccgacca gtgaaattga gtgaagtggc gtaattgatc ataaatacaa
     4081 gcggtcggtt ttactcgcta cactcgcact tcgtgccatc ggcatagccg atgttc
//
LOCUS       DANMBQ010000170         4127 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.171, whole genome shotgun sequence.
ACCESSION   DANMBQ010000170 DANMBQ010000000
VERSION     DANMBQ010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4127
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.171"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(230..1870)
                     /gene="pgi"
                     /locus_tag="PXE92_002450"
     CDS             complement(230..1870)
                     /gene="pgi"
                     /locus_tag="PXE92_002450"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDL5761638.1"
                     /translation="MQKINPVQTFAWNALEQHKADNLSIPQLFAEDPNRFDKYSLRFE
                     DQLLVDFSKNAINEKTLTLLRQLANECGLESAKNAMFSGKKINRTENRAVLHVALRNR
                     ANTPIAVDGKDVMPEVNAVLAKMKDFCERVISGEWKGYTGKTITDVINIGIGGSDLGP
                     YMVTEALRPYKNHLNMHFVSNVDGTHIAEVLRKVNPETTLVLVASKTFTTQETMTNAL
                     SARKWLLDSAKDESAVAKHFVALSTNAKEVEKFGIDTANMFEFWDWVGGRYSLWSAIG
                     LSIALSLGFENFEQLLAGAHAMDKHFLITPIEKNIPTTLALVGIWNNNFLGAESEAIL
                     PYDQYMHRFAAYFQQGNMESNGKFVGRDGKPVTHQTGPIIWGEPGTNGQHAFYQLIHQ
                     GTKLIPCDFIAPAQTHNPLSDHHNKLLSNFFAQTEALAFGKSKETVEKEFLDAGKTLE
                     EVAEIVPFKVFSGNKPTNSILVQKITPYSLGALIAMYEHKIFVQGVLFNIYSFDQWGV
                     ELGKQLANRILPELETDEKINSHDSSTNGLINQFKAWR"
     gene            complement(1903..2151)
                     /locus_tag="PXE92_002451"
     CDS             complement(1903..2151)
                     /locus_tag="PXE92_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HDL5761639.1"
                     /translation="MLTPKNLEAIAQQLHNALPQSLKNVGNDLDEKFKQILQAQLARL
                     DVVTREEFDVQSQVLLRTREKLTELEKRLDELTQRTDE"
     regulatory      2275..2319
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            2323..2991
                     /gene="queC"
                     /locus_tag="PXE92_002452"
     CDS             2323..2991
                     /gene="queC"
                     /locus_tag="PXE92_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDL5761640.1"
                     /translation="MTHQKPKAVVIFSGGQDSTTCLFQAIAEFGKENVEVVTFQYGQR
                     HSIELEKARWISNDLGVKQTLIDTSVIKAITTNALMDNNAEIQQQGSTPNTFVDGRNA
                     LFLLYTAIYAKGQGIQTIFTGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYNFNIRTP
                     LMYLTKKETWALADKLGAFDYIRDHTHTCYLGVEGGCHDCPSCVLREKGLNEYLAERE
                     VSNV"
     gene            2984..3406
                     /gene="queD"
                     /locus_tag="PXE92_002453"
     CDS             2984..3406
                     /gene="queD"
                     /locus_tag="PXE92_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HDL5761641.1"
                     /translation="MFKIAKEFSFDMAHMLDGHDGKCQNLHGHTYKLQVEVAGELFQE
                     GAKRGMVMDYSDLKAVVKQHILEPMDHAFIYDLQSERESQVAQLLIDLNSKVYGIPTR
                     TTAEEMAKYMFEKLEKVGLPVSLIRLWETPTSYCEYSK"
     gene            3406..4032
                     /locus_tag="PXE92_002454"
     CDS             3406..4032
                     /locus_tag="PXE92_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDL5761642.1"
                     /translation="MAELISNPRFPIVEIFESLQGEGFNTGMPAIFVRFGKCNLTCPW
                     CDTNYNQFEQWTLSDILAKVRSYSAKNVIITGGEPTIQPNLSLLLEQFKKEGYFLAIE
                     TNGLKEVPAQIDYIATSPKRMYQEKYQRRCIEFANEVRIVVDGEVQGFCEQIESQIKA
                     EHYYLSPCEVEGKMNLLETITQIGLLNQRPNKPKWQLSIQTHKIVGIE"
BASE COUNT         1253 a          757 c          875 g         1242 t
ORIGIN      
        1 tgagtgaaga gtagaggtaa aatagtaagc ctttttaacc agtttattta ttgtacctat
       61 tttagaaaaa agaaaagtag aaaagagata ttaggtaaac tcatagtgca aaagaatata
      121 gaaaaaactg cttgtgtaga aatggcgctt agttcagtcc tcagctaaaa ttttagaaaa
      181 aaagcataga gattttttac ctctatgctt tttattgtat tgactatatt taacgccaag
      241 ccttgaattg gttaattaaa ccatttgtgg agctgtcgtg gctgttgatt ttttcatcgg
      301 tttcgagttc gggtaaaatg cggtttgcaa gctgtttgcc taactccacg ccccattggt
      361 cgaaactgta aatgttgaac agcacgcctt gcacgaagat tttgtgttca tacattgcaa
      421 ttaatgcccc taagctgtac ggggtgattt tttgcaccaa gatagagttg gtcggtttgt
      481 ttccgctgaa cactttaaac ggcacgattt cagctacttc ttccaacgtt ttacctgcat
      541 ctaaaaactc tttttcaact gtttcttttg atttaccgaa agctagtgct tcagtttgag
      601 caaagaagtt agaaagcagt ttgttgtgat gatcgcttaa cggattgtga gtttgtgccg
      661 gtgcgataaa atcacaagga attaattttg tgccttgatg aatgagttga tagaatgcgt
      721 gctgaccgtt agttcccggt tcgccccaaa taatcggacc tgtttggtga gtaaccggtt
      781 tgccgtcacg ccccacaaat ttaccgtttg attccatatt gccttgttgg aaataagccg
      841 caaagcggtg catatattgg tcgtaaggta aaatcgcttc tgattcagca cctaagaaat
      901 tgttattcca aatgccgact aaagctaacg tagttggaat gtttttctca atcggcgtga
      961 ttaagaaatg cttatccatt gcgtgagcac cagcaagtag ctgctcgaag ttctcaaaac
     1021 ctaatgaaag ggcaatcgaa agcccgatgg cagaccataa tgagtaacga ccgccaaccc
     1081 aatcccagaa ttcaaacata ttagcggtat caataccgaa tttttccact tctttggcat
     1141 tggttgaaag tgccacgaaa tgttttgcta ccgcagattc atctttggca gaatcaagta
     1201 gccatttgcg agctgaaagg gcattggtca tcgtttcttg agtggtaaag gtttttgaag
     1261 ccactaacac taacgtggtt tcaggattaa ctttacgcaa cacttcagca atatgcgtgc
     1321 cgtccacgtt agacacaaag tgcatattaa ggtgattttt ataagggcgt aatgcctctg
     1381 ttaccatata aggacctaga tccgagccac caataccgat attgatcaca tcagtaatcg
     1441 ttttgccggt atagcctttc cattcgccgg aaataacacg ctcgcagaaa tctttcattt
     1501 tcgctaacac ggcattcact tccggcatta catctttgcc atcgactgcg attggtgtat
     1561 tggcacggtt acgcagtgca acgtgcaata cggcacggtt ttcagtgcgg ttgatttttt
     1621 tgccggagaa catcgcattt tttgctgatt ccaaaccaca ttcatttgcc agttggcgaa
     1681 gtaaggttaa ggttttttcg ttgatcgcat tttttgaaaa atcgactaat aattgatctt
     1741 caaaacggag ggaatatttg tcgaaacggt ttggatcttc ggcaaaaagt tgaggaatag
     1801 aaaggttgtc tgctttatgt tgctctaagg cattccaagc aaaagtttgc acagggttaa
     1861 ttttttgcat ctgagtttcc ttatactaaa ttaaaaaatc gattattcat ctgttctttg
     1921 agtcagttca tcaagacgtt tttctaattc ggttaatttt tcacgagtgc ggagtaacac
     1981 ttgagattga acatcaaatt cttcacgagt gacaacatca agacgggcta attgggcttg
     2041 aaggatttgc ttaaattttt catctagatc attaccgaca ttttttaagc tttgcggtaa
     2101 ggcgttatgg agttgttgag caatcgcttc taagttcttc ggcgtgagca tatttaaatt
     2161 ccttactata aatgagtatc ccaattttat tgaattttgg gtttaagaga aagcaaattc
     2221 tttgtaaaat atcacctttc gcaaaataca agcaaaaaag accgcttgta ttttttattt
     2281 gtggttcgta aacctcccac acaaaaaaac taaggacaca aaatgactca tcaaaaacca
     2341 aaagccgttg tgattttttc cggcggtcaa gactctacca cttgtttatt ccaagctatt
     2401 gctgaatttg gcaaagaaaa tgtggaagtc gttacctttc aatatgggca acgccattcg
     2461 attgaacttg aaaaagcacg ctggatttct aacgatttag gcgtcaaaca aacgctgatt
     2521 gatacttcgg tgattaaagc gattactacc aatgcgttaa tggataataa tgctgaaatt
     2581 caacaacaag gcagcacacc caataccttt gtggatgggc gtaatgcctt atttctgctt
     2641 tataccgcca tttatgccaa agggcagggc attcaaacta tttttaccgg cgtgtgtgag
     2701 accgatttta gtggttaccc tgattgccga gatgtatttg taaaatcaat gaatgtaacg
     2761 ctaaatttag cgatggacta taatttcaac attcgcacgc cattgatgta tttaactaaa
     2821 aaagaaactt gggcattagc agataagctg ggtgcttttg attatattcg agaccatacc
     2881 cacacctgtt atttaggcgt tgaaggtggt tgccacgact gcccgagttg cgtattgcga
     2941 gaaaaaggct tgaatgaata tttagcagaa agggaggtaa gcaatgttta aaattgctaa
     3001 agaatttagt tttgatatgg ctcatatgct agatggacac gatggcaaat gccaaaactt
     3061 acacggacac acctacaaat tgcaagttga ggtggcaggt gagctatttc aagagggagc
     3121 taaaagagga atggtaatgg actattcgga tctaaaagca gtggtaaaac aacatatttt
     3181 agagccgatg gatcacgctt ttatttacga cttacagagt gagcgtgaaa gccaagtagc
     3241 acaattatta attgatttaa actccaaggt ttatggtatc ccaactcgta ccacagccga
     3301 agaaatggcg aaatatatgt ttgaaaaatt agagaaagtg ggcttaccgg ttagcctaat
     3361 tcgcttgtgg gaaacgccta cttcttattg tgagtacagc aaataatggc ggagttaatt
     3421 tcaaaccctc gttttccgat tgttgagatc tttgaaagct tacaagggga aggctttaat
     3481 accggaatgc cggctatttt tgtacgtttt ggcaaatgca acctcacttg cccgtggtgc
     3541 gataccaatt acaatcaatt tgagcaatgg acgttaagcg atattcttgc caaagtaaga
     3601 agctattctg cgaaaaatgt gattattacc ggaggcgagc caacgattca gcctaattta
     3661 tcgttattat tagaacaatt taaaaaagag ggatattttt tagcgatcga aaccaacggc
     3721 ttaaaagagg ttccggcaca aattgattat attgcgacca gcccaaagcg aatgtaccaa
     3781 gaaaagtatc aacgccgttg cattgaattt gcgaatgaag tccgtatcgt cgttgatgga
     3841 gaagtacagg gtttctgtga gcaaatagaa agccaaatta aagctgagca ttactatctt
     3901 tcaccttgtg aggtagaggg aaaaatgaac ttgctggaaa ccatcaccca gattgggtta
     3961 ttaaatcagc gtccaaataa gcctaaatgg cagctaagta tccaaacgca taaaattgtg
     4021 gggattgaat aagtagaagt tagaagatga tttgtaaaag atcagacttg atctgacaat
     4081 tcactctaaa aagtgagagt ttcccgttta gaatatgagt gtccaaa
//
LOCUS       DANMBQ010000171         4123 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.172, whole genome shotgun sequence.
ACCESSION   DANMBQ010000171 DANMBQ010000000
VERSION     DANMBQ010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4123)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4123)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4123
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.172"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(77..781)
                     /locus_tag="PXE92_002455"
     CDS             complement(77..781)
                     /locus_tag="PXE92_002455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6-like element IS26 family transposase"
                     /protein_id="HDL5761643.1"
                     /translation="MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDH
                     STIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTV
                     DFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDV
                     EHRQIKYRNNVIECDHGKLKRIINATLGFKSMKTAYATIKGIEVMRALRKGQASAFYY
                     GDPLGEMRLVSRVFEM"
     gene            complement(872..1699)
                     /locus_tag="PXE92_002456"
     CDS             complement(872..1699)
                     /locus_tag="PXE92_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_034033256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxacillin-hydrolyzing class D beta-lactamase
                     OXA-2"
                     /protein_id="HDL5761644.1"
                     /translation="MAIRIFAILFSIFSLATFAHAQEGTLERSDWRKFFSEFQAKGTI
                     VVADERQADRAMLVFDPVRSKKRYSPASTFKIPHTLFALDAGAVRDEFQIFRWDGVNR
                     GFAGHNQDQDLRSAMRNSTVWVYELFAKEIGDDKARRYLKKIDYGNADPSTSNGDYWI
                     EGSLAISAQEQIAFLRKLYRNELPFRVEHQRLVKDLMIVEAGRNWILRAKTGWEGRMG
                     WWVGWVEWPTGSVFFALNIDTPNRMDDLFKREAIVRAILRSIEALPPNPAVNSDAAR"
     gene            complement(1776..2567)
                     /locus_tag="PXE92_002457"
     CDS             complement(1776..2567)
                     /locus_tag="PXE92_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANT(3'')-Ia family aminoglycoside
                     nucleotidyltransferase AadA25"
                     /protein_id="HDL5761645.1"
                     /translation="MREAVTIEISNQLSEVLSVIERHLESTLLAVHLYGSAVDGGLKP
                     YSDIDLLVTVAVKLDETTRRALLNDLMEASAFPGESETLRAIEVTLVVHDDIIPWRYP
                     AKRELQFGEWQRNDILAGIFEPAMIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQ
                     DLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAITGKIAPKDVAADWAIKRLPA
                     QYQPVLLEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK"
     gene            complement(2625..3158)
                     /gene="aadB"
                     /locus_tag="PXE92_002458"
     CDS             complement(2625..3158)
                     /gene="aadB"
                     /locus_tag="PXE92_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000381802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside nucleotidyltransferase
                     ANT(2'')-Ia"
                     /protein_id="HDL5761646.1"
                     /translation="MDTTQVTLIHKILAAADERNLPLWIGGGWAIDARLGRVTRKHDD
                     IDLTFPGERRGELEAIVEMLGGRVMEELDYGFLAEIGDELLDCEPAWWADEAYEIAEA
                     PQGSCPEAAEGVIAGRPVRCNSWEAIIWDYFYYADEVPPVDWPTKHIESYRLACTSLG
                     AEKVEVLRAAFRSRYAA"
     gene            3345..3968
                     /gene="tetR(H)"
                     /locus_tag="PXE92_002459"
     CDS             3345..3968
                     /gene="tetR(H)"
                     /locus_tag="PXE92_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance transcriptional
                     repressor TetR(H)"
                     /protein_id="HDL5761647.1"
                     /translation="MAKLDKEQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPTLYWH
                     VKNKRALLDALAETILQKHHHHVLPLPNETWQDFLRNNAKSFRQALLMYRDGGKIHAG
                     TRPSESQFETSEQQLQFLCDAGFSLSQAVYALSSIAHFTLGSVLETQEHQESQKEREK
                     VETDTVAYPPLLTQAVAIMDSDNGDAAFLFVLDVMISGLETVLKSAK"
     gene            complement(3971..4108)
                     /locus_tag="PXE92_002460"
     CDS             complement(3971..4108)
                     /locus_tag="PXE92_002460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761648.1"
                     /translation="MPENGVIFSDGIEDDYLQFNAGCIAHIGIADIQGQLISQKGRQR
                     I"
BASE COUNT         1027 a         1067 c          979 g         1050 t
ORIGIN      
        1 agtgccgatt gaccgagctt taacggcact gttgcaaagt tagcgatgag gcagcctttt
       61 gtcttattca aaggccttac atttcaaaaa ctctgcttac caggcgcatt tcgcccaggg
      121 gatcaccata ataaaatgct gaggcctggc ctttgcgtag tgcacgcatc acctcaatac
      181 ctttgatggt ggcgtaagcc gtcttcatgg atttaaatcc cagcgtggcg ttgattatcc
      241 gtttcagttt gccatgatcg cattcaatca cgttgttccg gtacttaatc tgtcggtgtt
      301 caacgtcaga cgggcaccgg ccttcgcgtt tgagcagagc aagcgcgcga ccataggcgg
      361 gcgctttatc cgtgttgatg aatcgtggga tctgccactt cttcacgttg ttgaggattt
      421 tacccagaaa ccggtatgca gctttgctgt tacgacggga ggagagataa aaatcgacag
      481 tgcggccccg gctgtcgacg gcccggtaca gatacgccca gcggccattg accttcacgt
      541 aggtttcatc catgtgccac gggcaaagat cggaagggtt acgccagtac cagcgcagcc
      601 gtttttccat ttcaggcgca taacgctgaa cccagcggta aatcgtggag tgatcgacat
      661 tcactccgcg ttcagccagc atctcctgca gctcacggta actgatgccg tatttgcagt
      721 accagcgtac ggcccacaga atgatgtcac gctgaaaatg ccggcctttg aatgggttca
      781 tgtgcagctc catcagcaaa aggggatgat aagtttatca ccaccgacta tttgcaacag
      841 tgcccgttga agtaaccggc gctgcgcggt tttatcgcgc agcgtccgag ttgactgccg
      901 ggttgggcgg taacgcttca atagagcgaa ggattgcccg cacgattgcc tccctcttga
      961 aaagatcatc cattctgttt ggcgtatcaa tattcagtgc gaagaatacg gagccagtcg
     1021 gccactcaac ccatcctacc caccaaccca tacggccttc ccagcccgtc tttgcacgca
     1081 gtatccagtt gcgaccggct tccacaatca tgagatcctt gaccaagcgc tgatgttcta
     1141 cccgaaaggg cagctcgtta cgatagagct tcctgagaaa tgcaatttgc tcctgcgccg
     1201 agattgcaag gctgccttct atccagtaat cgccattact tgtcgaagga tcggcgttgc
     1261 catagtcgat tttcttcaaa tagcgccgag ctttgtcatc accaatttcc tttgcaaata
     1321 gctcatacac ccaaacagta gaattccgca ttgctgatcg caaatcttgg tcttgattgt
     1381 ggcctgcaaa gcccctgtta acgccgtccc atcgaaaaat ctggaactca tcacgaacag
     1441 cgcctgcatc aagtgcaaaa agtgtatgag gtatcttgaa tgtcgatgca ggcgagtagc
     1501 gtttcttcga tcgcacagga tcaaaaacca acatggcacg atccgcttgg cgttcgtctg
     1561 ccacaactat cgtgcctttg gcttgaaatt cgctgaaaaa cttcctccag tcagaacgtt
     1621 ctagcgtgcc ttcttgcgca tgcgcgaaag tggcaagaga aaaaatggag aaaagtatcg
     1681 cgaagattcg gattgccatt aacttttcct taatgcccaa cggccaaggt aagccgcgcc
     1741 gcgaagcggc gtcggcttga acgaattgtt agacattatt tgccgactac cttggtgatc
     1801 tcgcctttca cgtagtgaac aaattcttcc aactgatctg cgcgcgaggc caagcgatct
     1861 tcttcttgtc caagataagc ctgtctagct tcaagtaaga cgggctgata ctgggcaggt
     1921 aggcgtttta ttgcccagtc ggcagcgaca tccttcggcg cgattttgcc ggttattgcg
     1981 ctgtaccaaa tgcgggacaa cgtaagcact acatttcgct catcgccagc ccagtcgggc
     2041 ggcgagttcc atagcgttaa ggtttcattt agcgcctcaa atagatcctg ttcaggaacc
     2101 ggatcaaaga gttcctccgc cgctggacct accaaggcaa cgctatgttc tcttgctttt
     2161 gtcagcaaga tagccagatc aatgtcgatc atggctggct cgaagatacc cgcaagaatg
     2221 tcattgcgct gccattctcc aaattgcagc tcgcgcttag ccggataacg ccacgggatg
     2281 atgtcgtcat gcacgacaag ggtgacttct atagcgcgga gcgtctcgct ctcgccaggg
     2341 aaagccgaag cctccataag atcattgagc aatgctcgcc gcgtcgtttc atcaagcttt
     2401 acggccacag taaccaacaa atcaatatcg ctgtatggct tcaggccgcc atccactgcg
     2461 gagccgtaca aatgcacggc cagcaacgtt gattccagat ggcgctcaat gacgcttagc
     2521 acctctgata gttggttcga aatttcgatg gtcaccgctt ccctcatgat gtctaacacc
     2581 tgagttaagc cgcgccgcga agcggcgtcg gcttggacga attgttaggc cgcatatcgc
     2641 gacctgaaag cggcacgcaa gacctcaacc ttttccgccc cgagtgaggt gcatgcgagc
     2701 ctgtaggact ctatgtgctt tgtaggccag tccactggtg gtacttcatc ggcatagtaa
     2761 aagtaatccc agatgatcgc ctcccagctg ttacaacgga ctggccgccc ggcgatgacg
     2821 ccctcagccg cctctgggca cgagccctgc ggagcctccg cgatttcata cgcttcgtct
     2881 gcccaccaag caggttcgca gtcaagtaac tcatccccga tctccgctaa gaatccatag
     2941 tccaactcct ccatgacgcg cccgccgagc atttcaacta ttgcctcgag ctcgccgcgc
     3001 ctctcgccgg gaaacgtcag atcaatatca tcgtgcttgc gtgttacacg ccctagccgt
     3061 gcatcgatcg cccagccccc accgatccag agcggcagat ttcgctcatc tgccgcagct
     3121 agaattttgt gtatcaatgt gacctgcgtt gtgtccatgc ggcctaacct ttgttttagg
     3181 gcgactgccc tgctgcgtaa catcgttgct gctaatacgg tgatcagcag tataataata
     3241 attgatttat tcattgagat cctaaaaatc tatcagtgat agagtgggtg taatatatct
     3301 tatcagtgat agattgtcaa ggctatttta ttttgaggta ggtaatggca aagctagata
     3361 aagaacaagt tattgataat gcgttgattt tacttaatga agttggtatt gaaggattaa
     3421 caacgcgtaa gctggcgcaa aaaataggtg tggaacaacc cacattgtat tggcatgtaa
     3481 aaaataaacg cgctttgtta gatgcattag cagaaactat tttgcaaaag caccatcatc
     3541 atgttttgcc attgccgaat gaaacatggc aggacttttt gcgaaataac gcgaaaagct
     3601 tccgccaagc cttattaatg tatcgtgatg gtggcaaaat tcatgcggga acacgcccct
     3661 ctgaaagtca atttgagaca tcagaacagc aactacagtt tttgtgtgat gctgggttta
     3721 gtctatctca agccgtgtat gcattaagct ctattgcgca ttttacatta ggctccgtac
     3781 tggaaactca agagcatcaa gaaagccaaa aagagcgtga aaaagtagag acggatactg
     3841 ttgcctatcc gccattatta acccaagccg ttgcaattat ggatagtgat aatggtgatg
     3901 ctgcattttt gtttgtcctt gatgtgatga tctctggact tgaaacagta ttaaagagcg
     3961 ctaaataaat ctaaattcgc tgacgccctt tttggctaat tagttgccct tgtatgtcag
     4021 cgataccaat gtgagcaata caacctgcat taaattgtaa atagtcatct tcgatgccat
     4081 cagagaaaat tacgccattc tctggcatca aagatcctaa ttg
//
LOCUS       DANMBQ010000172         4097 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.173, whole genome shotgun sequence.
ACCESSION   DANMBQ010000172 DANMBQ010000000
VERSION     DANMBQ010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4097
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.173"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            94..735
                     /gene="sodA"
                     /locus_tag="PXE92_002461"
     CDS             94..735
                     /gene="sodA"
                     /locus_tag="PXE92_002461"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HDL5761649.1"
                     /translation="MAYTLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALE
                     AHPELLEKCPGALIKDLSQVPAEKRIAVRNNVGGHVNHTLFWKGLKTGTTLQGALKEA
                     IERDFGSVEAFQSEFEKAATTRVGSGWAWLVLEEGKLAVVSTANQDNPLMGKEVAGVS
                     GYPILVLDVWEHAYYLNYQNRRPDFIKAFWNVVNWDEAARRFEEKVATCGCAK"
     gene            complement(798..1922)
                     /gene="alr"
                     /locus_tag="PXE92_002462"
     CDS             complement(798..1922)
                     /gene="alr"
                     /locus_tag="PXE92_002462"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDL5761650.1"
                     /translation="MKPATATIDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLP
                     AAGTLADMVDGFGVARLREALEIQETGYTGKIVLVEGFFDREELLKTLSRKFDTVIHN
                     LEQLELLEQVAKEWQAEQQKGFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVE
                     RLKNCALVNSISFVSHFSRADELDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYW
                     KQAHYDWVRPGIIMHGISPHYTPITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWV
                     SPKDTKLGVTAMGYGDGYPRNAPEGTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKV
                     GDKAIFWGEQLLIEDVAKHIGVISYELITKLTPRVIFEYK"
     gene            2052..4013
                     /gene="recD"
                     /locus_tag="PXE92_002463"
     CDS             2052..4013
                     /gene="recD"
                     /locus_tag="PXE92_002463"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HDL5761651.1"
                     /translation="MLNLLLELKQEKAISDLNYQFARFIDNKQKPYGYSPLEQDLAVL
                     AAALVSYQVGLGHTALRLENLSLSSLFELNSKPQTYHLLEQILQKIEQIPPLEWQSVL
                     KNHIAFSYSPETIKPMLFQNSLLYFYRYWQAEHRIAGYLQQAVDFSEKFANTELNQSI
                     LNQLFTGKAQTIDWQKIAVATALEKQFSLISGGPGTGKTTTVVKLLLGLQLKQQALQK
                     PYLQIALAAPTGKAAARMKESLESKLAEEKGLSEELKRSIPTEAVTIHRLLGARPLTE
                     KTKYHTKNPWHYDLVVLDEASMIDLSMMEKVVQALKPNSRLIMLGDKDQLASVEAGSI
                     MGELGSFIDNGYSQSHCDYLKAVTDYQIEAGNALPIGDCLSHLKHSYRFGEKAWIGEL
                     ANAVNDQKINLSWEIFDKYKNSDKLENFCYPETKETTDKSSWIEKSVQMVVDKAVELY
                     RDYLQAVQKREKNPDSVSVKAIFEKFQKVRILSALRVSELGVERLNMAIAEGLRKASL
                     VKFNHSRDRYIGKPILMTENMPINSIASGDVGIILPDENGESRVYFDSLQENREHHSL
                     PLGRVSNYEAAYIMTVHKSQGSEFEHTVLVLPHSISPVLTKELIYTAITRAKDKFTLF
                     GSEKVWKYSVGAKTERQSGLKEQIRGKFS"
BASE COUNT         1276 a          789 c          880 g         1152 t
ORIGIN      
        1 tcaaaaaaat gtgcattttt tgtgtgtttc ttgataaaat gtactcggag tttaactctg
       61 attaacctat ttactatttg agaggaatta actatggcat atacattacc agaattaggc
      121 tacgcttatg atgcgttaga gccacatttc gatgctaaaa caatggaaat ccaccattct
      181 aaacatcacc aagcttacat caacaatgca aatgcagcat tagaagctca ccctgaatta
      241 ttagaaaaat gtccgggtgc attaatcaaa gatttgagcc aagtgcctgc agaaaaacgt
      301 attgcagtgc gtaacaacgt aggtggtcat gtaaaccaca ctttattctg gaaaggttta
      361 aaaacaggca ctaccttaca aggtgcatta aaagaagcga ttgagcgtga tttcggttca
      421 gttgaagctt tccaatcaga atttgaaaaa gcagcgacta ctcgtgttgg ttcaggctgg
      481 gcgtggttag tattagaaga gggtaaatta gccgttgttt caaccgctaa ccaggacaac
      541 ccactaatgg gtaaagaagt ggcaggcgtt tcaggctatc cgattttagt cttagacgtt
      601 tgggaacacg cttactactt aaactaccaa aaccgccgtc cggatttcat taaagcattc
      661 tggaacgttg taaactggga cgaagccgct cgccgttttg aagaaaaagt agcaacctgc
      721 ggttgtgcga aataatattt tcgatcttga ataagataca agcggtaaaa tttgttgaaa
      781 attttaccgc ttgttgtcta tttatattca aaaatcacac gaggagtgag tttagtaatc
      841 agctcatagc taatcacgcc aatgtgtttc gccacatctt caattaatag ttgctctccc
      901 caaaaaatgg ctttatcgcc cactttatct tggctctctg cacctaaatc gaccgtcagc
      961 atatccatcg aaactcgacc gacaatcggc actattctac cgttaatcaa cacaggggta
     1021 ccttcaggag cattgcgagg gtagccatcg ccgtagccca ttgcagtcac gccgagtttg
     1081 gtatctttag ggcttaccca agcaccacca tagcctacag gctcgccggc tttatgggta
     1141 cgcacagcga tcagggaaga ggagagcgtc attaccggct taaaacctaa atcggtaatc
     1201 ggcgtatagt ggggagaaat gccgtgcata ataatacccg ggcgaaccca atcataatga
     1261 gcctgtttcc aataaagaat accgcttgag gcggaaatac tgcggtcgtg atcctgatat
     1321 ttttgcgtag cttgctcaaa caccgcaatt tgtttttcgg tatagccaca atcgagttca
     1381 tcggcacggc taaaatgact cacaaagctg attgaattga ccaaggcaca atttttcaaa
     1441 cgttcaacaa agtgatcgac ttgctccggg tgaatgccta agcggtgcat tccggtgtcg
     1501 atttttagcc aaatgttaat cgggaagtag attttcgctt tacgagtcca aaagcctttt
     1561 tgttgctctg cctgccattc ttttgctact tgctcgagta attccagttg ttcgaggtta
     1621 tgaatgacgg tatcaaactt gcgggaaagg gttttgagta gctcttctcg gtcaaaaaaa
     1681 ccttcaacta acacaatttt gcctgtgtat ccggtttctt gaatttctaa ggcttcacgc
     1741 aaacgggcaa ctccaaagcc atcaaccata tctgctaatg tgccggcagc cggcaataag
     1801 ccttgcccgt aagcattggc tttgatcatc gccaataatt tttgctgtgg agcgaaagat
     1861 ttgatcaggc gaatattatg gcggagggct tgactatcaa tggttgctgt tgctggtttc
     1921 atacttatct acatagttaa aatcacaaga aaggctaaat tatacgccta aaataaaaaa
     1981 tcccttagaa aataatgcaa aaaagattag tattatcact taatgttagg tggtcgattt
     2041 aaggtttgat tatgctgaat ttattattgg aacttaaaca agaaaaggcg atttctgact
     2101 taaattatca atttgcccgt tttattgata ataagcagaa accctatggg tattcgcctt
     2161 tggagcaaga tttagctgtg ttagccgctg cgttggtttc ttaccaagtg ggacttgggc
     2221 atacggcatt acgtttggaa aatctcagtc tttcttctct ttttgaatta aatagcaagc
     2281 cacaaactta tcatttgctc gaacaaattt tgcaaaaaat tgagcaaatt ccaccgcttg
     2341 aatggcagag tgtgctgaaa aatcatatcg cttttagcta ttctcccgaa acaattaaac
     2401 cgatgttatt ccaaaacagc ttgctctatt tttatcgcta ctggcaagcg gagcatcgca
     2461 ttgccggtta tttacaacaa gcggttgatt tttcggaaaa atttgcaaat accgaattaa
     2521 accaaagcat tctcaaccaa ctattcactg ggaaagctca aactatcgac tggcaaaaga
     2581 ttgccgttgc aacagcatta gaaaagcagt ttagcttaat ttcaggtggg ccgggaaccg
     2641 gaaaaacaac tacggtagta aaattattac tcgggctgca attaaaacag caagcactac
     2701 agaaaccata tttgcaaatc gctctggctg caccaaccgg aaaagcagca gcaagaatga
     2761 aagagtcgct ggaaagcaag ttggcggaag aaaaggggtt atctgaggag ttaaaacgct
     2821 ctattccaac tgaagcagtg actattcatc gcttgcttgg tgcgagacca ttaactgaga
     2881 aaaccaaata tcataccaaa aatccgtggc actatgattt ggtcgtatta gatgaggctt
     2941 caatgattga tttatcaatg atggagaaag ttgttcaagc gctcaaacca aactctcgct
     3001 tgataatgct gggagataaa gatcagcttg cttctgtgga agctggttca attatggggg
     3061 aacttggctc ttttattgat aatggttata gccaatccca ttgcgattac ttaaaagccg
     3121 ttaccgacta ccaaattgaa gccggtaatg cgttgccgat tggtgattgt ttatctcact
     3181 taaaacatag ctatcgattt ggcgaaaaag cctggattgg agagcttgca aatgcagtaa
     3241 atgatcaaaa aattaacctt tcgtgggaga ttttcgacaa atataaaaac agtgataagt
     3301 tagaaaattt ctgttatccg gaaacgaaag agacaacgga taaatcaagc tggattgaaa
     3361 aaagtgtgca aatggtggtg gataaagcgg ttgaacttta tcgtgattat ttacaagcgg
     3421 ttcaaaaacg ggagaaaaat ccagattcag tgagtgtgaa agcgattttt gagaaatttc
     3481 aaaaagtccg aattttatca gccttaaggg taagtgaact gggggttgaa cgtcttaata
     3541 tggcgattgc ggaaggcttg cggaaagcta gcttagtgaa atttaatcat agccgagacc
     3601 gctatatcgg aaaaccgatt ttaatgacag aaaatatgcc gataaatagc atagccagcg
     3661 gtgatgtcgg catcattttg ccggacgaaa atggagaaag ccgagtttat tttgattcct
     3721 tacaggaaaa tagagaacac catagtttgc ctctaggtag ggtttcaaat tatgaagcag
     3781 cttatattat gactgtgcat aaatcgcaag gttctgaatt tgaacatacg gtattggtgt
     3841 tgccccattc gatttccccg gtgctgacga aagagttgat ttacaccgca atcacaaggg
     3901 caaaagataa atttacctta tttggtagcg aaaaagtttg gaaatacagt gttggtgcca
     3961 aaaccgaaag acaaagtggg ctaaaagaac aaataagagg caagtttagc taaattaata
     4021 ctcgttttgc cgtaaaaata cgcaagcggt catttttttc aaatttttta caaaaaccgc
     4081 ttgcgttgtt tttgttt
//
LOCUS       DANMBQ010000173         4051 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.174, whole genome shotgun sequence.
ACCESSION   DANMBQ010000173 DANMBQ010000000
VERSION     DANMBQ010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4051
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.174"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..1631)
                     /locus_tag="PXE92_002464"
     CDS             complement(<1..1631)
                     /locus_tag="PXE92_002464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5761652.1"
                     /translation="MKKKQQYRKSTINNTNASQQNSGEVLNSVNYQTLLEDYLNKISF
                     SNRQFIDELKTEHNKKLKELENKVSSLEQTNHVQQQDISRLNILLEQKNIEENRNLER
                     MISYQLGYALINACKSFSGFISLPSELLKIRKLAKDKKQQKLLPSSPVANTPKQQTAL
                     VTSAPARSQSIDLTRGLTLLDPISELCWADAFTGYPLVRKSYADHIAGSTCKFAFFES
                     AWQANKGSWIYAFTSPGLKHNNAQALLDAIQKLKDKSIPIIFWNKEDPMHYEMFKPIA
                     EKVDYVFTTDQLVVDKYKKELGHSNIWALPFAAPIKVTNPIGRFSLDTETVCFAGTYY
                     AQNHENRKKQMDMLLPALLAYNGCIYDRASKDTSGKYAYPEQYTHLIREGVNFNEIVK
                     LYKKFKVFLNVNTITQSTTMMSRRVYELLASGTPVVSTPSKAITAQFPGIVITVNNEK
                     EAELAVHKLLTDSYYWHKQSMLGIREVMSKHTYENRWEFACSVINNEPIKEKTPSVRI
                     IAVYHNYLDLAIYIDSLIHQNNVDIKEVVLLISSSL"
     gene            complement(1635..2906)
                     /gene="wecC"
                     /locus_tag="PXE92_002465"
     CDS             complement(1635..2906)
                     /gene="wecC"
                     /locus_tag="PXE92_002465"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL5761653.1"
                     /translation="MSNFNTISVVGLGYIGLPTATVFAQHGLNVIGVDVNQHAVDHIN
                     QGKIHIVEPDLDVAVHQCVSSGKLKATLTPEPAEAFLIAVPTPFKGEDYEPDLSYIQA
                     ACKAIAPVLEKGNLVILESTSPVGATEQMAEWLAEYRPELSFPQQAGEDSDIRIAHCP
                     ERVLPGQVMHELIENDRIVGGMTNKCSVQAVNLYKTFVKGDCIVTNARTAEMCKLTEN
                     SFRDVNIAFANELSIICDRLDINVWELIALANRHPRVNILQPGCGVGGHCIAVDPWFI
                     VNKTPDLAKIIRTAREVNDHKPEWVISKMNEAVIYALQKTGKSIDQIKIACLGLAFKP
                     DIDDLRESPALKITEKLAEKYPNQVFAVEPNVEELPKKLANKNISLISVDEALEVADV
                     VVVLVDHSEFKLVKPVFLNDICVVDTKGIWR"
     gene            complement(2921..4036)
                     /gene="wecB"
                     /locus_tag="PXE92_002466"
     CDS             complement(2921..4036)
                     /gene="wecB"
                     /locus_tag="PXE92_002466"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015703970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HDL5761654.1"
                     /translation="MRYLIVFGTRPEAIKMAPLVEGFKKSGLNFKVCVTAQHRQMLDQ
                     VLELFEITPDYDLDIMSNKQTLSTVTSAILEKIQPVIAEYKPTTIFVHGDTATTLASS
                     LAAYYNQIDIAHIEAGLRTHNIYSPWPEEGNRKLTAALAKYHFAPTQSTKKNLLNENI
                     AEGTIYVTGNTVIDALFLACKKLDENIDLLSSLQEKFSYIKSKRTILITGHRRENFGN
                     GFENICKAVSTLASDFPDVQFIYPVHLNPNVREPVNRLLADKSNVHLIEPCDYLSFVY
                     LMRESYLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVEAGTVKLVGTAQSEIIKQV
                     TELLNDQAAYTKMSEAHNPYGDGTAVKQILSVFQSKQ"
BASE COUNT         1203 a          763 c          730 g         1355 t
ORIGIN      
        1 agtgaagatg aaataagtaa tacaacctct ttaatatcaa cattattttg atgaattaga
       61 gaatctatat agatagctaa atctagataa ttatgataaa ccgcgataat tcgaacacta
      121 ggtgtttttt cctttattgg ttcattattg attacactac acgcaaattc ccaacgattt
      181 tcataagtat gttttgacat tacttcacgt atgcccagca tggactgctt atgccaataa
      241 tagctatctg tcagtaattt atggacagca agctcagctt ctttctcatt atttacagta
      301 ataacaatgc cagggaattg tgccgtaata gctttagatg gcgtagatac aacaggtgtg
      361 ccgctagcta gaagttcata cacacgtctt gacatcattg tggttgattg agtgatggta
      421 ttaacattta aaaatacttt aaatttctta tacaacttaa ctatctcatt gaaatttacc
      481 ccttctcgga taagatgagt gtattgttca ggataagcat atttgccact tgtatcttta
      541 gatgctctat cataaataca gccgttgtaa gccaataatg caggtaacaa catatccatc
      601 tgttttttac gattttcatg attttgagca taatatgttc cagcaaaaca aactgtttct
      661 gtatcaagag aaaatctgcc aattggattg gttactttaa ttggggcagc aaaaggcaaa
      721 gcccaaatat ttgaatgccc aagttctttt ttatatttat ctacaaccaa ttgatctgtt
      781 gtaaaaacat aatctacttt ttctgcgatt ggcttaaaca tctcataatg cattggatct
      841 tctttattcc aaaaaatgat aggaatgctt ttatctttta gtttctgaat tgcatctaac
      901 aatgcttgag cattattatg ttttaagcct ggtgaagtaa aagcatagat ccatgaccct
      961 ttatttgcct gccaagcact ttcaaaaaaa gcaaatttac acgtgctgcc agcaatatga
     1021 tcagcataag attttctaac taaaggatac cctgtaaagg catctgccca gcataattca
     1081 gaaataggat ccagtagtgt caatcctctt gtcaagtcaa tagattgaga tcgggcaggt
     1141 gcacttgtaa ctaatgcagt ctgttgcttt ggtgtatttg caacagggga agatggcaat
     1201 aatttctgct gtttcttatc cttagctaac ttcctgattt ttaataattc tgaaggcaag
     1261 gatataaaac cactaaatga tttacaagcg tttattaaag catatcctaa ctgataagaa
     1321 atcattcttt caagatttct attttcttca atgttctttt gctctaacaa aatatttaat
     1381 ctggatatgt cttgctgttg aacatgatta gtttgctcaa ggctgcttac tttattttct
     1441 agctccttga gctttttatt atgctcagtt ttcagctcat ctataaactg ccgattacta
     1501 aaactaattt tatttaaata atcttccagt aatgtttgat aattgacaga atttaatact
     1561 tcgcctgaat tttgttgtga tgcattagta ttgttaatag tggatttacg atattgctgt
     1621 ttctttttca tcacttatct ccaaattcct ttagtatcca ccacacaaat atcattcaaa
     1681 aacacaggtt tgactagttt aaattcgcta tgatccacca aaacaactac aacatcagct
     1741 acttccagag cttcatcaac agaaatcaaa gaaatgttct tgttagccaa ttttttcggt
     1801 agctcttcaa cattcggctc aactgcaaat acttgatttg gatacttttc cgccaatttt
     1861 tcagtaattt ttaatgccgg actttcacgc aaatcgtcaa tatcaggctt gaatgccaac
     1921 cctaaacaag caattttgat ttgatcgata gatttacctg ttttttgtaa ggcataaatt
     1981 accgcttcat tcatctttga gataacccat tcaggtttat gatcgtttac ctcacgagca
     2041 gtgcggataa tttttgccaa gtcaggagtt ttattcacaa taaaccaagg atctacagca
     2101 atgcagtgtc cacctacacc acaacccggt tgtaagatat tgactcgagg gtgtctgtta
     2161 gccaaagcaa ttagttccca tacattaata tctaggcgat cacaaataat agaaagctca
     2221 tttgcaaaag cgatattgac atcacggaaa ctattttcgg ttaatttaca catttctgcg
     2281 gtacgggcat tggtaactat acagtcgcct tttacaaaag ttttgtataa attgaccgct
     2341 tgcacagagc atttatttgt cataccaccc acaatacggt cgttttcaat caattcatgc
     2401 atcacttgtc ctggtagaac tcgttctggg caatgggcga tacgaatatc agaatcttca
     2461 cctgcttgct gagggaagct tagctctgga cggtactcgg caagccactc agccatctgt
     2521 tctgttgcac caaccggaga ggttgattct aaaatgacta aattaccttt ttccagcaca
     2581 ggtgcaattg ctttgcaagc agcttgaata taacttaaat caggctcata atcctcgcct
     2641 ttaaaaggcg ttggtacagc aattaaaaat gcttctgctg gttcaggtgt cagtgtggct
     2701 tttaattttc cgctagatac acattggtga acagcaacat ctaaatcagg ctcgacaatg
     2761 tgaattttcc cttgattgat atggtctacg gcgtgctgat taacatctac gccaattaca
     2821 tttagaccgt gttgggcaaa tacagtggcg gttggtaagc caatatagcc taagcctact
     2881 actgaaatgg tattaaagtt cgacatacat ttatccctta ttattgtttt gattgaaata
     2941 ctgagagaat ttgtttcaca gctgtgccat cgccataagg gttgtgagcc tcagacattt
     3001 ttgtataagc agcttgatca ttgagtaact cagtaacttg tttaataatt tcagattgtg
     3061 cagttccaac aagttttact gttccggctt ctacagcttc cggtctttct gttgtgtctc
     3121 tcattactaa taccggtttt cctaatgatg gggcttcttc ttgaatacct ccggagtcag
     3181 ttaagataag gtaagactct ctcattaaat aaacaaagga gagatagtcg caaggctcaa
     3241 tgagatgcac attggattta tccgctaata ggcgattgac cggttctctt acatttgggt
     3301 tgaggtgtac ggggtagata aattgaacgt cagggaaatc agacgctaat gttgaaacgg
     3361 ctttacagat gttctcaaaa ccattaccga aattttcgcg gcgatgtccg gtgatcaaaa
     3421 tagtacgctt actttttata taagaaaatt tctcttgtag cgagcttaat aaatcaatat
     3481 tttcatctaa ttttttgcaa gcgaggaata aggcatcaat taccgtatta cccgttacat
     3541 aaatggtgcc ctcagcaata ttttcgttga gtagattttt cttggtgctt tgtgttggtg
     3601 cgaaatggta ttttgccaaa gcagctgtta atttgcgatt gccttcttcc ggccaaggag
     3661 agtagatatt atgcgttctt agacctgcct caatatgagc gatatcaatt tggttgtaat
     3721 aggctgctaa tgaagaggca agagtggttg ctgtatcgcc atgaacaaaa atagtagttg
     3781 gtttgtattc ggcaataaca ggttgaattt tttctaaaat agcagaagtt acagtagaaa
     3841 gtgtttgctt attgctcata atatccaggt cataatctgg agtaatttcg aataattcta
     3901 aaacttggtc cagcatttgg cggtgctgag cagtaacaca gactttaaaa tttagaccgc
     3961 ttttcttaaa gccctcaact aagggagcca ttttgattgc ctcaggacga gtaccgaaga
     4021 cgatgagata gcgcatttat tactccttta a
//
LOCUS       DANMBQ010000174         4005 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.175, whole genome shotgun sequence.
ACCESSION   DANMBQ010000174 DANMBQ010000000
VERSION     DANMBQ010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4005
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.175"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            350..727
                     /locus_tag="PXE92_002467"
     CDS             350..727
                     /locus_tag="PXE92_002467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5761655.1"
                     /translation="MDKSQGVVSVNIRGGSGFGRANNAVGPNYMGMLAGKYQFNDSTW
                     IGALFGHSWRKISQNYKIGGGRKVTDSSIDLSKIDDLDKESSTTSPFNAAHLKQKPMS
                     RMAKLEYGDKYQTITLLPKSGSG"
     gene            1457..2233
                     /locus_tag="PXE92_002468"
     CDS             1457..2233
                     /locus_tag="PXE92_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5761656.1"
                     /translation="MNYSATLSAYIHDLFTPFISYSQTHRAPNIKEIFFSNLGDYGVN
                     TALQPEQAKTTQFGINGFKERVFSEEDKLGFKVLFYNTHLKNYIYNVQHTAVGSAPSL
                     FIFHKNYEKPVNIKGIELEFSYDIGSFYGNLAYARQNTNQPVSFTDASSRVDAASHYG
                     FKTQGFGASKISALPRDYGSLELGTRWFDQRLQIGGVAKYYGKSKRIAIDEFNYTYYP
                     GTHIVKETHRLEETVNKQPIIVDFYVSYEPIKSLILKLEL"
     gene            2837..3331
                     /locus_tag="PXE92_002469"
     CDS             2837..3331
                     /locus_tag="PXE92_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5761657.1"
                     /translation="MSRKYKFHEKSGAYFVSFATVYWVGVFVREIYFQVIVDALDYCR
                     KHKGMILYAYCIMPTHIHLLFQAENQNPSDLIRDFKTFTAKILIQRIKDNLQENRREW
                     LLWMFSRAAERRCNVKQYQFWQHHNQPIEIYSQKFFDEKLNYIHQNPVVSGFVSEPWE
                     WKYN"
     gene            3586..3825
                     /locus_tag="PXE92_002470"
                     /pseudo
     CDS             3586..3825
                     /locus_tag="PXE92_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
BASE COUNT         1351 a          639 c          750 g         1265 t
ORIGIN      
        1 attttcgtct tgtgctatac tagactcgtg caataaaggc acacttcttt cttcagtgtc
       61 tttagcgttg cgatttaaat ttaattacat tttttatagg aaagacaata gaaatgaaga
      121 tcaaaaaata tgtatttcac ctgacttata caacacttat ctgcccctta cctagggtat
      181 tcgcagagga aggttatatg ttagatacgg ttgaggttaa agcccaagca ataaaaaaac
      241 agatgaagtt ttcattaaaa caggggcaat aagcacccga gataaaatct tggaatcaaa
      301 ccaaagctta gagactattg ttcgttctat gcctggcgca tttacacaaa tggataaatc
      361 tcaaggtgtg gtttctgtta atattcgagg aggttctgga tttgggcgag ctaataatgc
      421 agtaggccca aattatatgg gaatgctcgc tggcaaatac caattcaatg actctacttg
      481 gataggagca ttatttgggc atagttggcg caaaatctct caaaattata aaataggagg
      541 cggacgaaaa gttacggata gctcgattga ccttagtaaa attgatgatc tagataaaga
      601 aagttctacc acctcaccgt tcaatgcagc tcatttaaaa caaaaaccaa tgagtcgtat
      661 ggctaaattg gaatatggcg ataaatacca aaccatcaca ctattaccaa agtcaggtag
      721 cgggtagaca tttaaaaaac caaaacaacc agttaaatta tcgttttcac ttgcccgagt
      781 caccttggtt agatgttcaa gtggcctatg cggaaaatca aggcaaacaa aactacaaca
      841 aagggagctg aattaataat aaatatttaa ttcaaggttt ggcaattaac aacaaagcga
      901 caaccttaaa tttgagtaac acctttaaag tgtctccgtt taaagatgga gaatgggaag
      961 caatattagg ttttaatcgt ttaaagaacc gctatagtaa aaatagacat cctgcggaat
     1021 taaactataa cttagagaat ggcgaaacca gcgaaaacaa cgattctgta ggaatgacag
     1081 ccgttcgtaa atcgctttat acttcaactt tccagcctga tggcgaacag aagttcgata
     1141 ctttttatct cgacaatcac tttaactatg gtatatgggg attggatata aacgcaaata
     1201 ttaataccgc tcggtttatt ggtcagcgtt ttaaatattt tccttttgcg attagagaat
     1261 tggagtcaga tattagacag gcaagtagaa ataggcagtt tgagcattta aggtcattac
     1321 aatctcaatt agacaacttg caaaaaaaca ttgtacatat attccagatg aggattttcc
     1381 taatgatcct gaattgggag agtttaactg tcctgatgtc aattttcctc atacagcaac
     1441 aggaaaacat aaacgaatta attattcagc aaccttgtct gcttatattc acgatttatt
     1501 cacgcccttt attagttatt ctcaaacaca tcgagcccct aatattaaag aaatattctt
     1561 ctctaattta ggtgactatg gtgtaaatac cgcactacaa ccagagcaag cgaaaacaac
     1621 acagtttggt attaatggat tcaaagaacg ggtatttagt gaagaagata aattaggatt
     1681 taaagtgcta ttttataaca ctcacttaaa aaactatatt tataatgtac aacataccgc
     1741 tgttggtagt gctcctagtt tattcatttt ccacaaaaac tatgaaaaac cagtaaatat
     1801 caaagggata gaattagaat ttagttatga tataggctct ttctatggca acttagctta
     1861 tgctcgtcaa aatacgaatc aacccgtatc ctttacagat gcaagttcaa gggtagatgc
     1921 cgcttctcat tatggtttta aaactcaagg ttttggtgcc agcaaaattt cagcgttacc
     1981 aagagactat ggctcattgg agttagggac aagatggttt gatcaaagac tacaaattgg
     2041 cggagtggca aaatattacg gaaaaagtaa acgtattgcg atagatgagt ttaactatac
     2101 ttattatcct ggaacacata ttgtgaaaga aactcatcgg cttgaagaaa ccgtaaataa
     2161 acaacctatt attgttgatt tttacgtgag ctacgaacca atcaagtcgc ttatattaaa
     2221 gttagaacta taaaatgtct ttgacaaaaa gtacattgat cctcttgatg ctaataatga
     2281 tgcagcaagt cagagggttt acaattctga tatcagtgat gaacctattt atacgctcaa
     2341 taattatgca agagggagaa ctatagtgtt tagcacaagt tataaattct aaatggggtt
     2401 gtcctagata agctagctta aatttccttt aactaattat ttggcatagt gactaaaatt
     2461 gagtctgcac agtaggttaa aaccttataa tataaggatt taacccagat ggtgcaagcg
     2521 tccacgcttg tgccagttaa ttcctgttct gaaagtattt cagtcataag ataaaagcct
     2581 aaatcagcca agtaaaattt ggtttatttg ggcttttgtt tttggcacaa gcgtggacgc
     2641 ttgcgtcatc attttattta tccatccatt gctatcattt cagtatttct ttggcttatc
     2701 acaagcggtt aaattttatc aacactttgc aagttttaat gatttttgcg atctagatcg
     2761 aaaaagttat attggcttgt gtaatttaat tttgaatagg gtatttttct tattcctttt
     2821 taagttgaga aaggctatga gccgaaaata taaattccac gaaaagagcg gtgcttattt
     2881 tgtcagtttt gcaactgttt attgggttgg tgtgtttgtg agagagattt attttcaggt
     2941 aattgttgat gccttagatt actgcagaaa acataaggga atgattttgt atgcctattg
     3001 tattatgcca actcatatcc atttattatt tcaagcagaa aatcaaaatc cttctgattt
     3061 aatacgagat ttcaaaacat tcaccgctaa aatacttatt cagagaatta aagataattt
     3121 gcaagaaaac cgtcgggaat ggttgctgtg gatgttttct cgggcggctg aacgacgttg
     3181 taatgtaaaa caatatcaat tctggcaaca tcataaccaa cctattgaaa tctattcgca
     3241 gaaattcttt gatgaaaagt taaattatat tcatcaaaat ccagtggtaa gtggttttgt
     3301 gtctgagcct tgggaatgga aatataattg aaataaactg cttgtatttt tgcgatctct
     3361 gtcgaaaaat tgtgaatttt tacttgtctg tcggagaatt ttgcgtaaat tctgcttatt
     3421 atgttttagt taaaggtatt ctatgagtag ataacccaaa tgaaaatagc gatataacct
     3481 atttctaccc agtaattaat tcccgctttt atgtatcaga tcaaataatt tacattgatt
     3541 tatcggtatt atctgtcttt agttttttta attaaggagc cttatatgaa attcaaaaaa
     3601 ttagcattag cagcaatgtt aggtggctta tttgtaacag ctaatgcggc agaattacct
     3661 aatatcacta ttttagcgac aggcggaacg attgctggta gtcagcagaa tgcaaatagt
     3721 agtgcttatc aagcagggca attgaatatc gaaaccttaa ttgaagcagt gccagaaatg
     3781 aaaacattgg cgaatatcaa aggtgagcag attgtgaaaa ttggcccact aaagccttgt
     3841 tagatgtagg ctatcaaggt attgtcgtag caggtgttgg taacggcaat atgagtgcgg
     3901 aaaatcttgc attatttaga ggaagccaac aatattttta agatttttaa taaacgttaa
     3961 agcatataaa aaatggcata agtgagtcac ttatgccatt atttt
//
LOCUS       DANMBQ010000175         3988 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.176, whole genome shotgun sequence.
ACCESSION   DANMBQ010000175 DANMBQ010000000
VERSION     DANMBQ010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3988)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3988)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3988
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.176"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            43..1518
                     /gene="mepM"
                     /locus_tag="PXE92_002471"
     CDS             43..1518
                     /gene="mepM"
                     /locus_tag="PXE92_002471"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HDL5761658.1"
                     /translation="MAVFLLAVFSLFVDIVLALKDQSSINNTSSQEDIIAIDKQEKYQ
                     SINTNLAENNTLHQEQHSSFINYVTDLLTQSALVIEHDDEIVDDQTATSYEDELVGQD
                     DEVEEGIETVENQVPGEKLPEEAEKALEDLLDVADQALRIQNQFSYTVARGDKLKDVL
                     EQSGLTASVAKNLIKQHSALAQLEPGQQFYWVLDNDGELEYMNWLVSEKEERVYERKE
                     NGKFSFQRFEKKGEWKLDVVRGTIQNSFAVSLKAVGLSDRQINQLAVGLQSQIATNKL
                     KKGDRFAILIKREYIDGKVTDLGNVEGIHVISSKKSYYAIQADNGRYYSRYGETLSGG
                     FARHPLLFAARVTSSFNPKRRHPITGRISPHKGVDYGVPIGTPIIAPSDGVVEHVAYQ
                     ARGAGRYIRIKHGHITTVYMHLSKTLVKPGQSVKKGERIALSGNTGGSTGPHLHYEFH
                     INGRPVNPITVKLPGSNSGMGNKERQAFLNKAKNVESRLKM"
     gene            1528..2211
                     /gene="dsbC"
                     /locus_tag="PXE92_002472"
     CDS             1528..2211
                     /gene="dsbC"
                     /locus_tag="PXE92_002472"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HDL5761659.1"
                     /translation="MKKNLITLGLMCLSTITFASDAKLKSQLEKIGATDVKISDSPLT
                     GFKMATSNEGVVYISQDGRYVIQGKVFELKNGKAIDITNQGLLAELNSYTNEMIVYPA
                     KNEKHVITVFMDITCHYCHLLHTKIKEYNDLGITIRYLAFPRGGMNTQTAKQMEAIWT
                     SADKVKALNDAEDGKLPTQIKTPDIVKKHYQLGIKFGVTGTPNMVTSEGELIGGYVEP
                     KELAKMLSE"
     gene            2296..>3988
                     /gene="recJ"
                     /locus_tag="PXE92_002473"
     CDS             2296..>3988
                     /gene="recJ"
                     /locus_tag="PXE92_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDL5761660.1"
                     /translation="MEKIIKRRPLLTTEIVSTNPLLNRIYQSRGIKNTQELEHNLKNL
                     HRPQQLANIEQAVDLLLQAFREKSRIIIVGDFDADGATSTSLALIALRQLGFDKVDYL
                     IPDRFSQGYGLSVAVAEMVLAKGADLVLTVDNGISSTEGIALLKSHQIQVLVTDHHLP
                     PESLPNADALVNPNLAFCEFPSKSLAGVGVIFYVMMALRSRMREQHLFENKPEPNFAE
                     LLDLVALGTVADVVPLDQNNRILVHQGLQRIRSGHCRLGIKALAEVGKRDLSTLQAAD
                     LGFAIAPRLNAAGRLENMSLGVELLICENMELARRLALDLDSLNQTRKEFEQEMKAEA
                     LSICANLPSLAQSEQAHGIVLYQADWHQGVIGILASRIKDQFNRPVIAFAQESEESEY
                     LKGSARSINGVHMRDLLEHIDMRHPDLIEKFGGHAMAAGLTIHQSKLDLFKQIFDQSI
                     NAIIEPEQLQGIIYTDGELNALEFTLANAEMIRQGGPWGQHFPEPSFEGEFSILQQKL
                     LAGKHLKLMLQSEKGQLFDAIWFNVDVRAFPDLSIKKARLVYRLDINEFRGEKSLQ"
BASE COUNT         1333 a          643 c          877 g         1135 t
ORIGIN      
        1 attttagcga gagatcgtaa gcgacataaa aaacatttta agattgcggt tttcttatta
       61 gcggtattta gtctatttgt tgatattgtt ctcgcactaa aagatcaatc ctcaatcaat
      121 aatacatctt cacaggaaga tattattgcc attgataaac aggaaaaata tcagagtatc
      181 aacactaatt tggcggaaaa taatactctc catcaggagc aacattccag ttttattaat
      241 tatgtgactg atttactgac tcagtcggca ttagtaatcg aacatgacga cgaaattgtt
      301 gatgatcaaa cagcgacttc ttatgaagat gaattagttg ggcaagacga tgaagtagaa
      361 gaagggattg aaacggttga aaatcaagtt cctggggaaa aactcccaga agaagctgaa
      421 aaggcattag aagatttact tgatgtggct gatcaagcac tacgaattca aaaccaattc
      481 agttataccg tagctcgagg tgataaactt aaagatgtat tagagcaatc aggcttaact
      541 gcatccgttg cgaaaaattt aattaagcaa cattcggcat tagcacaatt agaaccgggt
      601 caacaatttt attgggtatt agataatgac ggtgaattag aatatatgaa ctggctggtt
      661 tccgaaaaag aggaacgggt ttatgagcga aaagaaaatg gtaaattttc ttttcaaaga
      721 tttgagaaaa aaggggaatg gaagttagat gttgtaagag gaactattca gaatagtttt
      781 gcggttagct taaaagccgt tggcttatca gaccgccaaa ttaaccagct agcggttgga
      841 ttgcagtcac aaattgcgac gaataaatta aaaaaagggg ataggtttgc aattctgatt
      901 aagcgggaat atattgacgg caaagtaacg gatttaggaa atgtggaagg aatccatgta
      961 attagcagta aaaaaagtta ttatgctatt caagcagata atggacgcta ttatagtcga
     1021 tatggtgaaa cattaagtgg aggatttgct cgtcatccat tattatttgc agcaagagta
     1081 acttcttctt tcaaccccaa acgcagacac cctattacag ggagaattag tccgcataaa
     1141 ggggttgact atggcgtgcc aataggtact ccgatcatcg caccaagtga tggtgtcgta
     1201 gagcatgtgg catatcaagc ccgtggagca ggacgttata ttcggataaa acacggacat
     1261 attacgactg tttatatgca cctcagcaaa acgttggtaa aaccagggca gagtgttaaa
     1321 aaaggggagc ggatagcatt atcgggtaat acaggcggtt caaccgggcc tcatttacac
     1381 tatgaattcc atattaatgg tcgaccggtc aacccgatta cggtaaaatt gcctggctca
     1441 aattcaggta tgggtaataa agaacgtcaa gcattcttaa ataaagcgaa gaatgtagaa
     1501 agtagattaa aaatgtaagg attctcaatg aaaaaaaatc taatcacttt aggattaatg
     1561 tgtttatcaa ccatcacgtt tgcttcagat gcaaaactaa aaagccagct tgaaaaaatt
     1621 ggagccacag atgttaaaat ttcagattct ccattaacag gctttaaaat ggcgacttca
     1681 aatgaaggtg ttgtatatat cagccaagac ggtcgttatg taattcaagg taaagtattt
     1741 gagctaaaaa atggtaaagc gattgatatt actaatcaag gattgttggc agaattgaat
     1801 tcatacacta atgaaatgat cgtatatcca gcgaaaaatg agaaacatgt gattacggtg
     1861 tttatggata ttacttgcca ttattgccat ttactacata ctaaaatcaa agaatataat
     1921 gatttaggta ttaccattcg ctatttggca ttcccgcgtg gtggaatgaa tacccaaaca
     1981 gcaaaacaaa tggaagctat ttggacatca gcagacaaag taaaagcact gaatgatgct
     2041 gaagatggta aattaccaac ccaaataaaa acgccggata ttgtgaaaaa acattaccaa
     2101 ttagggatta aatttggtgt gacaggtacc ccaaatatgg taacttcaga aggtgagttg
     2161 attggtggtt atgtagagcc taaagaatta gcgaaaatgt taagtgagta attcattaac
     2221 ttgaatacaa gcggtctttt tttgtaaaat ttttgcaaaa gaagaccgct tgttgtttca
     2281 ttaaagaaga gtattgtgga aaaaataatt aaaaggcgcc cattattaac aacggaaata
     2341 gtctctacaa acccgttatt aaatcgaatc tatcaaagtc gaggcataaa gaatacgcaa
     2401 gaactagagc ataatttaaa gaatttgcat agaccacagc aacttgccaa tattgagcaa
     2461 gccgttgact tgctattaca agcctttcgt gaaaaaagcc ggatcattat tgtgggtgat
     2521 tttgatgcag atggtgcaac cagtacatcg cttgccctta ttgcgttacg ccaattgggt
     2581 ttcgataagg tagattattt aattccggat cgtttttctc aggggtacgg attgagtgta
     2641 gcggttgctg aaatggtatt agcaaaaggg gcggatttag tcttaacggt agataatgga
     2701 atttcttcga ctgaaggcat tgctctgcta aaaagccatc agattcaagt tttggttacc
     2761 gatcatcatt taccgccaga gagcctaccc aatgcagatg cactggtaaa ccccaattta
     2821 gctttttgtg aatttccgtc taaatcttta gccggggtag gcgtgatctt ctatgtaatg
     2881 atggcattgc gttctcgtat gagagaacaa catttatttg aaaataaacc agagccaaat
     2941 tttgctgaat tactggattt agtcgcttta ggcacagtgg ctgatgtagt gccgttagat
     3001 caaaataatc ggatattggt gcatcaaggg ttacagcgaa tccgttcagg gcattgccgt
     3061 ttagggataa aagctttagc ggaggtgggc aagcgagatc tttctacttt gcaagcagca
     3121 gatttgggtt ttgctatcgc accacgtttg aatgcagctg gtcggttaga aaatatgtct
     3181 ttaggggttg agttactaat ttgtgaaaat atggaattag ctcgccggct tgcgcttgat
     3241 cttgattctc ttaatcaaac ccgaaaagag tttgaacaag aaatgaaagc agaagcactg
     3301 tcgatttgtg cgaatttgcc aagtcttgcg cagtctgaac aggcacacgg aatagtgtta
     3361 tatcaagcag attggcacca aggtgtaatt gggatcttag cttctcgcat taaagatcaa
     3421 tttaaccgtc ctgtcattgc ttttgcacaa gaaagtgagg aaagtgaata tctaaaaggt
     3481 tctgctcgct cgatcaacgg agtacatatg cgagatttac tggaacatat cgatatgcga
     3541 catccagact tgattgaaaa atttggtgga cacgcaatgg cggctggttt gactatccat
     3601 caatcaaaat tagatttatt taaacagata tttgaccaat ctattaatgc aattatcgag
     3661 cctgagcaat tacaaggcat catttatacc gatggtgagt taaatgcact agagtttact
     3721 ttagccaatg ccgagatgat taggcaaggt gggccttggg gacaacattt tccagaacct
     3781 agttttgaag gggagtttag cattctccaa caaaaattac tcgcaggtaa acatttaaaa
     3841 ttaatgttgc aatcagagaa agggcaacta tttgatgcaa tttggtttaa tgtggatgta
     3901 agggcgtttc ctgacttatc gatcaaaaag gcaagattag tttataggtt ggatattaat
     3961 gaatttcgag gagagaaatc tttgcaat
//
LOCUS       DANMBQ010000176         3966 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.177, whole genome shotgun sequence.
ACCESSION   DANMBQ010000176 DANMBQ010000000
VERSION     DANMBQ010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3966
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.177"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            73..378
                     /gene="cyaY"
                     /locus_tag="PXE92_002474"
     CDS             73..378
                     /gene="cyaY"
                     /locus_tag="PXE92_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HDL5761661.1"
                     /translation="MNTAQFHQAVEQVWQQIEEKIYDEGLSVDTEIQGAVCTLTFDDE
                     SQVIINKQEAMLELWLASKLGGFHFKNVEGEWVTDEGRSFWQHLEEAFARHGESVSF"
     gene            487..2286
                     /gene="recQ"
                     /locus_tag="PXE92_002475"
     CDS             487..2286
                     /gene="recQ"
                     /locus_tag="PXE92_002475"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HDL5761662.1"
                     /translation="MNTTAISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGG
                     KSLCYQVPALCLDGITLVISPLISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQK
                     ALSGQLKLLYLSPEKVMTQGFFHFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGL
                     RNTFPNVPLMALTATADLTTRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPLEQ
                     LIKFISKQQGKSGIVYCNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQR
                     DDIQIVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP
                     SDYAWLQKILLEEPESEQRNIKQHKLQAIGDFAESQTCRRLVLLNYFGEHRQEQCKNC
                     DICLDPPQQYDGLLDAQKVMSVIYRTGQIFGQHHIIAVLRGMNNLKIREHQHDQLSVY
                     GIGKEQSQHYWQNVVRQLIHLGLIIQNIANHSALQLTESARPFLRGEKQLQLALPRLG
                     ISATAFVQKQASHRYDKDLFARLRFLRKQIADLENIPPYIVFNDATLQEMAEFLPTSK
                     VEMLEINGVGERKFERFGQAFMSLIKEYQNNRK"
     gene            2445..2987
                     /gene="infC"
                     /locus_tag="PXE92_002476"
     CDS             2445..2987
                     /gene="infC"
                     /locus_tag="PXE92_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015871208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDL5761663.1"
                     /translation="MKPVKRVQSNRAHRLNDEIRGVKEVRLTDENGEQVGIVSLQDAL
                     NRAEEAELDLVEISPNAEPPVCRIMNYGKFIYEKEKAAKEQKKKQKVVQVKEIKFRPG
                     TDDGDYQVKLRSIIRFLEDGDKVKITVRFRGREMAHQEIGMDVLERVKADTAEIAMVE
                     SAPGKLEGRQVVMVIAPKKK"
     gene            3251..3448
                     /gene="rpmI"
                     /locus_tag="PXE92_002477"
     CDS             3251..3448
                     /gene="rpmI"
                     /locus_tag="PXE92_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDL5761664.1"
                     /translation="MPKIKTVRGAAKRFKKTASGGFKRKQSHLRHILTKKTTKRKRQL
                     RHKSMVAKADQVLVVACLPYA"
     gene            3557..3910
                     /gene="rplT"
                     /locus_tag="PXE92_002478"
     CDS             3557..3910
                     /gene="rplT"
                     /locus_tag="PXE92_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009635878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDL5761665.1"
                     /translation="MARVKRGVIARARHKKVLKAAKGYYGARSRVYRVAFQAVVKAAQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGLSYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFAALVEKAKSAL"
BASE COUNT         1296 a          783 c          796 g         1091 t
ORIGIN      
        1 tttacagacc atttaaacag ctaaaacaaa aagtatttac tacttatata acattcaaat
       61 aaggatacac caatgaacac agcacaattc caccaagccg tagagcaagt atggcaacaa
      121 attgaagaaa aaatttatga cgaaggatta tcagtcgata ctgaaatcca aggagcggtc
      181 tgcaccttaa cctttgatga tgaatcgcaa gttatcatta ataaacaaga ggcaatgctg
      241 gaattatggc ttgccagcaa attgggtggt ttccacttta aaaatgtaga aggcgaatgg
      301 gtaacagatg aaggtcgctc gttctggcaa catttagaag aagcttttgc tcgacacgga
      361 gaaagcgttt ctttctaatg cctaattgtt aactaagaca gcactcgtct ttgatgagtg
      421 ctttattttc attttaaaag atactctcag aagacgagta ctatcataag tagcaaccaa
      481 ctaccaatga acaccaccgc aatttctgtt ttaaataata tttttggcta tcaaaaattc
      541 cgagacgggc aagaagaagt tatcaatgcc gtgttggaaa atcgtgattg cctcgtgatt
      601 atgacaacag gcggtggcaa atccctttgc taccaagtgc cggctttgtg cctagacggc
      661 atcactttgg tgatttcgcc gcttatttcg ttgatgaaag accaggtgga tcaacttatc
      721 accaacggca ttgaagcagc ttatcttaac tccactcaaa cgctcgaaga gcagcaactt
      781 gtggaacaaa aagccttatc cggtcaatta aaattactct atctttcccc tgaaaaggta
      841 atgactcaag gctttttcca ctttatttcg ctatgtaaaa tcagctttat tgcggttgat
      901 gaagcccatt gtgtttccca atgggggcac gatttccgcc ctgaatatac cctgctaggt
      961 ggcttacgaa acactttccc gaatgtgccg ttgatggcac tcaccgccac ggcagatcta
     1021 acaacccgct ccgatattct gcatcattta cgcttaaata gcccacatat ctatttaggc
     1081 agctttgatc gccccaatat tcgctacacc gtgcaggaaa aatttaaacc gcttgaacag
     1141 ctcattaaat tcatcagcaa acagcaaggc aaaagcggta ttgtttactg caacagtcgc
     1201 aaaaaagtgg aagaaatcac cgagaaactc tcagcccgta aaatcagcgt gatgggctat
     1261 cacgccggta tgagttttga acagagagaa cgagtgcaga atgcctttca gcgtgatgat
     1321 attcaaattg tggttgccac tattgcgttt ggtatgggga tcaacaaatc caacgtacgt
     1381 tttgtggtac atttcgattt acctcgctct atcgaatctt actatcaaga aaccggacga
     1441 gccgggcgag atgatctccc ttctgaagcc gtgctttttt atgatcctag cgattatgct
     1501 tggttacaaa aaatattatt ggaagagccg gaaagcgaac agagaaatat taaacagcat
     1561 aaattacagg caattggcga tttcgccgaa tcacagactt gccgccgttt agtcttactc
     1621 aactactttg gggaacatcg ccaagagcaa tgcaaaaact gcgatatttg tttagatcca
     1681 ccgcaacaat acgatggctt acttgatgcc caaaaagtga tgtcggtgat ttaccgcacc
     1741 ggtcaaattt tcggtcagca ccatattatt gcggtattgc gaggaatgaa caatctcaaa
     1801 attcgtgaac atcaacacga tcaactttcc gtttatggta tcggaaaaga acaaagccaa
     1861 cattattggc aaaatgtggt gcggcaactg attcatttag ggttgattat tcaaaatatt
     1921 gctaaccatt ccgctctgca attaaccgaa agtgccagac catttttgcg tggagaaaag
     1981 caacttcagc ttgcattgcc acgtttaggt atatctgcga ctgcatttgt gcaaaaacaa
     2041 gcaagtcatc gctatgacaa agacctattc gcacgcttac gttttttacg caagcagata
     2101 gctgacctcg aaaatattcc accttatatc gtctttaacg atgccacctt gcaagaaatg
     2161 gcagaatttc tcccgacttc aaaagtggaa atgttagaaa ttaatggtgt tggtgaacga
     2221 aaatttgaac gatttgggca agcatttatg agtttaatca aagaatatca aaataaccga
     2281 aaataggcag ttaaataagg gctttattat tgcataagca ctgaaaatct tatagaatcc
     2341 gcacgtttag ctgtttttta atcacttaaa acaagcaatc taaaatattt atacgctctc
     2401 aagcggtaaa atttaagcaa aaatttacta gaaggaataa ggctattaaa cctgtaaaac
     2461 gtgttcaatc aaatcgtgca catcgtctta atgacgaaat tcgtggcgta aaagaagttc
     2521 gcttaaccga tgaaaacggc gaacaagttg gtattgtatc acttcaagat gctctaaata
     2581 gagcagaaga agctgaattg gatttagtgg aaatcagccc aaatgctgaa ccaccagttt
     2641 gtcgtattat gaactatggt aagttcatct acgaaaaaga gaaagcagca aaagaacaaa
     2701 agaaaaaaca aaaagttgtt caagttaaag agatcaaatt ccgtccggga actgatgatg
     2761 gcgattatca agttaaactt cgtagcatta tccgtttctt agaagatggg gataaagtaa
     2821 aaatcacagt gcgtttccgt ggtcgtgaaa tggctcacca agaaatcggt atggacgttt
     2881 tagaacgtgt caaagcagat actgcagaaa ttgcaatggt agagtcagcc ccaggcaaat
     2941 tggaaggtcg ccaagttgtg atggtgatcg cacctaagaa gaaataattt cgataagcac
     3001 attgttttaa tgtgcttttt tcttgataaa gcttaaattg gcttgcatag cggttatatt
     3061 ttcgctaaaa ttcgcaagct tttttgccta gccaagaaag agaaaatgct caacaggcaa
     3121 actcagcagc ctgcttgact ttttaacgat gaaaatcgta tagcggagaa taagtgcttc
     3181 caagtaattt tgttcacaaa attcgcctta ttttcataat atctaacaaa caatgcggag
     3241 ttttttaaca atgcctaaaa ttaaaacagt acgtggtgct gctaagcgtt tcaaaaaaac
     3301 agcttccggc ggttttaaac gtaaacaatc tcacttacgt cacattttga ctaagaaaac
     3361 cactaaacgt aaacgtcaat tacgtcacaa atcaatggta gcgaaagctg accaagtttt
     3421 agtagtagcg tgcttaccat acgcataagc cttttaggtt agcgtagtgt agtaaagtac
     3481 ggacgtacgg atagaattct tagtaaaggt cgtgatgacg accaccaatc aaaatagaca
     3541 attaggagat taaataatgg ctcgtgtaaa acgtggtgtt attgcaagag cacgccataa
     3601 gaaagttctt aaggctgcta aaggttatta tggtgcacgt tcacgcgtgt atcgcgttgc
     3661 tttccaagca gtagttaaag ctgctcaata tgcttaccgt gaccgccgtc aacgtaaacg
     3721 tcaattccgt caattatgga ttgctcgtat taacgcagca gctcgtcaaa acggtttatc
     3781 ttacagcaaa ttcatcaacg gcttgaaaaa agcatctgtt gaaatcgacc gtaagatctt
     3841 agctgacatc gcagtatttg acaaagttgc tttcgcagct ttagttgaaa aagcaaaatc
     3901 tgctctttaa ttttaaagaa tagaaatgag gacgcctagt gcgtcctttt ttatggataa
     3961 aataat
//
LOCUS       DANMBQ010000177         3950 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.178, whole genome shotgun sequence.
ACCESSION   DANMBQ010000177 DANMBQ010000000
VERSION     DANMBQ010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3950
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.178"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(334..1428)
                     /locus_tag="PXE92_002479"
     CDS             complement(334..1428)
                     /locus_tag="PXE92_002479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL5761666.1"
                     /translation="MKKTTLAILASALIANSALAITIYDHKETGTQIEFIGSARIKWE
                     STSDKTSPVNGKATRNHVNHAVDNNGSRFGFRLTQQVGHGFYALGRVEWRMRGDSSSQ
                     HNFDHIYDHQLYAGIGHKQYGELTYGNMTNIADEVKQTDLPNTLSLSDGLLTGSSRRT
                     LQYVYKGIEGLKLGAFYGGNSQRGNNGLDLVNKRKDIWGAAAIYNYKIDDNQSLKLAT
                     GATRERSEQSIGNYERIALAFGTAYTYGKTTLGLDLERRETEDQNAIGHKRIEKEVRT
                     VLLHRLTDQWNAYTMYAYKENKLNAVGLANDSKVKRNQFMLGTEYYIVPKHLKGFVEW
                     QATRAKHYTNDVKTAKSRNYTTVVGLRAYW"
     gene            1562..2740
                     /gene="lpxB"
                     /locus_tag="PXE92_002480"
     CDS             1562..2740
                     /gene="lpxB"
                     /locus_tag="PXE92_002480"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HDL5761667.1"
                     /translation="MKQQFPVIGLVAGEVSGDILGAGLIKALKVHYPNARFIGVAGSR
                     MIEAGCQSLFDMEELSVMGLAEVVKHLPRLLKRRKQVIDEMLKLKPDVFIGIDAPDFN
                     LTVEEKLKASGIKTIHYVSPSVWAWRQKRVFKIARAANLVLAFLPFEKAFYDKFNVPC
                     RFIGHTMADAIPLEPNRTEACLALNIDESKRYMAILVGSRGSEIQFLAEPFLKAAQLL
                     KARFPDLQFLVPMVSQKRMEQFNAIKQQVAPELELNIIQGKARQAMIASECTLLASGT
                     AALEAMLCKSPMVVGYRMKPLTYWLAKKLVKTDYISLPNLLAQAPLVPELIQEACNPE
                     NLAQELSLFLADDEKNQQHKALLKQQFMQLHQSIQCNADEQAAQAVIDLLNGSTSGQI
                     "
     gene            2767..3819
                     /gene="sohB"
                     /locus_tag="PXE92_002481"
     CDS             2767..3819
                     /gene="sohB"
                     /locus_tag="PXE92_002481"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HDL5761668.1"
                     /translation="MWKEVLLNYGIFLLELLTVFGIIAVVVMLILESKKQNENGSISI
                     TNLSEKYKEQQKSLSGFFLSEEELKHQEKQEKKVAKEKAKAEKKRLKAGEECVESPSR
                     LFVLNFNGDMMAHEVNSLRREIDAVISLANPEKDEVLLKLESPGGVVHGYGLAASQLQ
                     RLRDRNIYLTAAVDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVPNIHRLLKKH
                     DIDVDVMTAGEYKRTVTLVGENTEKGKQKFQQELEETHSLFKQFVARHRPQLDIEQVA
                     TGEHWFGQQAIELNLVDEIATSDDLLLNAIKEKEVIELKYKEKKKLAQKLGSQFEQSA
                     ENLLAKILHKSRSTLM"
BASE COUNT         1173 a          681 c          856 g         1240 t
ORIGIN      
        1 gactgtcaga ttaggtttga tcttctacat ataataaccc ctcatcactt tttgcagttt
       61 aacctctttt gcaacagata atttaaattt aggcgttttg gctgctcagt tattgccatt
      121 atgattatat tagttcacac taaaatttta gtgttgtttc ttaaagctga agatgctaat
      181 aggtgagtaa gcggttttta ccactttgaa gataaatgca atagcttctt gtttgaagga
      241 ttagttgtat ttaatcataa aaaatctgca ccttaatcag ttggttagcc caacttttag
      301 gtgcagatca ttctagtacg cttttcagtt ttattaccaa tatgctcgta agcctacaac
      361 agtcgtataa ttgcgagatt ttgcggtttt tacatcatta gtatagtgtt tagcacgagt
      421 tgcttgccat tcaacaaagc cttttaagtg ttttggaaca atgtaatatt ccgttcccaa
      481 cataaattgg tttcttttaa ctttgctatc atttgccaag cctacagcat taagtttgtt
      541 ttctttataa gcatacattg tgtaagcatt ccattgatcg gttaaacgat ggagtaacac
      601 agtgcgaact tctttttcga tacgtttgtg accgatagca ttttgatctt ccgtttcacg
      661 gcgttctaaa tctaagccaa gggtagtttt tccgtaggta taagctgtac cgaaggcaag
      721 agcaatgcgt tcataattgc cgatagattg ctcagaacgc tcacgggttg cacctgttgc
      781 taattttaag ctttggttat catcaatttt atagttataa attgctgctg caccccaaat
      841 atctttacgt ttattgacta aatctaagcc attgtttcca cgttggctat ttccgccata
      901 gaatgctccg agttttaatc cttcgatgcc tttgtaaaca tattgaagcg tacgtcgtga
      961 tgaaccggta agtaagccat cacttaagct gagtgtattt ggtaagtcag tttgttttac
     1021 ttcatcggca atattagtca tattgccgta tgttaattca ccgtattgtt tatgcccgat
     1081 tcctgcatag agttgatgat cataaatatg atcgaagtta tgttgtgagc ttgaatcgcc
     1141 acgcatacgc cattccacac gacctaaagc atagaatccg tgacccactt gctgggttaa
     1201 acggaaacca aaacgagagc cgttgttatc cactgcgtga ttaacgtggt tgcgggtagc
     1261 tttaccattt accggtgagg ttttatctga ggtgctttcc cacttaatac gagcagaacc
     1321 aataaattca atttgtgtac cggtttcttt atgatcgtaa atcgtaatag ctagagctga
     1381 gtttgcgatt aaggctgatg ctaaaatcgc taatgttgtt tttttcataa aaatcactcc
     1441 atatgaatag ataaagggag gtagtgtatg tgaatattca ttgctagaca ataatgtttt
     1501 gttagtttat atgatgattg gttataatag agtcacttac agatcttcaa taatatttaa
     1561 tatgaaacaa caattccccg ttattggctt agttgctggt gaggtctctg gcgatattct
     1621 tggtgccggg ttaattaagg cgttaaaagt acattacccg aatgctcgat ttatcggtgt
     1681 tgcaggctct cgaatgattg aggctggctg ccagtctttg tttgatatgg aagagctttc
     1741 tgtaatgggg ctagcagagg tggttaaaca tttacctcgt ttacttaagc gtcgtaaaca
     1801 ggttattgat gagatgctta aattgaaacc agatgtattt atcggtattg atgcaccgga
     1861 ttttaattta accgttgaag aaaaactcaa agcgagtggg attaaaacaa tccattatgt
     1921 tagcccttcg gtgtgggctt ggcgacaaaa gcgggtgttt aaaattgcca gagcagctaa
     1981 tttagtgttg gcatttctgc catttgagaa agcgttctat gataaattca atgtgccttg
     2041 tcgttttatc gggcatacga tggcagatgc gatcccactc gaaccaaatc gtacagaggc
     2101 atgtttagcg ttaaatattg atgaatccaa gcgatatatg gcaattttgg tgggaagccg
     2161 tggcagtgaa attcagtttt tggctgagcc ttttttgaag gctgctcagt tgttaaaagc
     2221 ccgttttccg gatttacagt ttttagtgcc aatggtcagc caaaagcgaa tggagcaatt
     2281 taatgcaatt aaacagcaag tagctcccga gttggaactg aatattattc aaggcaaggc
     2341 tcgtcaggct atgattgcgt cagaatgtac tcttttggca tcgggaacag cagcactaga
     2401 ggcaatgttg tgcaaatctc cgatggtagt tggttataga atgaaaccgc tgacttattg
     2461 gttagcaaaa aaattagtga aaaccgatta tatctcctta ccgaatttat tggctcaagc
     2521 cccattggta ccagaattga tccaagaagc atgcaacccg gaaaatttag ctcaagagtt
     2581 atctctattt ttagctgatg atgagaaaaa ccaacaacat aaagcattgc taaaacagca
     2641 gtttatgcag ctacatcaat caattcaatg taatgctgat gagcaagctg cccaagcggt
     2701 tatcgatctc ctaaacggct cgacaagcgg tcaaatttag ttagtttttt gtaaaaagga
     2761 aaatttatgt ggaaagaagt attacttaat tatggtattt ttttattaga gttattaact
     2821 gtatttggca ttattgcagt ggtggtgatg ctgattttgg aatcgaaaaa gcagaatgaa
     2881 aacggctcaa tttcaattac caatttatct gagaaatata aagagcagca aaaatctctt
     2941 tccggctttt ttctaagtga ggaagaatta aaacatcagg aaaagcagga gaaaaaagta
     3001 gcaaaagaga aagctaaagc agaaaaaaaa cgcttaaaag caggcgaaga atgtgtagaa
     3061 agcccttccc gtttatttgt attgaatttt aatggcgata tgatggctca cgaagtaaat
     3121 tccctacgcc gtgaaattga tgcggtaatt agcctcgcga atccggaaaa agatgaagtt
     3181 ttacttaaac ttgaaagtcc gggcggagtg gtgcacggtt atggattggc tgcttcgcag
     3241 ttacaacgtt tgcgtgatcg caatatttat ttaaccgcag cggtagataa agtagctgcc
     3301 agcggtggtt atatgatggc gtgtgtggcg aataaaattg tctctgcccc atttgcggtg
     3361 attggctcag tgggggtggt ggctcaggtg ccgaatatcc accgcttact gaaaaaacac
     3421 gatattgatg tggatgtgat gactgcaggt gaatataaac gcacggtgac gctggtggga
     3481 gaaaataccg aaaaagggaa acagaaattc cagcaagaac tggaagaaac gcactctctg
     3541 tttaagcaat ttgtggctcg acaccgccca caactggata ttgagcaggt tgcaacaggc
     3601 gagcattggt ttggtcagca agcgattgag ctaaatttgg ttgatgagat tgcaaccagt
     3661 gatgatctgc tcctcaatgc aattaaggaa aaagaagtga tcgagctaaa atataaagag
     3721 aagaaaaaac ttgctcagaa attgggttct caattcgagc aatcagcaga gaacctgctc
     3781 gctaagattt tacataaaag tcgttcaacg ctgatgtagc gtatatatta ttaaagggct
     3841 atcgtttata tagcccctta ttttatcagt tagtaataga atgaagtatt tgttcactat
     3901 ttaaatgacc tggaatactt ttctttaaat tgagtgaaga atctaacaat
//
LOCUS       DANMBQ010000178         3866 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.180, whole genome shotgun sequence.
ACCESSION   DANMBQ010000178 DANMBQ010000000
VERSION     DANMBQ010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3866
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.180"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..1296)
                     /locus_tag="PXE92_002482"
     CDS             complement(<1..1296)
                     /locus_tag="PXE92_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HDL5761669.1"
                     /translation="MKTLTLTANKITAVEGAAIGANQGSFAQKLNSTKARIDQLNAYR
                     IERAINANNHHFMHVFSLIPLLIHLNHPVLPAYVENAPQGIWHFQLSDYQKQFLVSYR
                     FDEAISADHLGPHPSFDALYSMGSTGTITQTSCSDLDLWLCYPNHFTIEQYKLMELKI
                     NKLQEWAKTFQIDINIYLMNPEQFKSQTYNSSVTDEHSGSAQHFFLLDEFYRSAILLA
                     GKRLLWLHLHKNEYQNVHNNPEIDLTEWIDFGDFSSLSTSEFFGASLWQLYKGINNPY
                     KSAIKILLLECYAHTYPKTKLISKEFKKKLLSDNALEYHFDPYLAMLELVTEHLRSRK
                     EWVKLDRLRVCFYAKAVEGEINNNWRSRDLDELVNQWSWSEKQIQLLQNRQHWKIKQV
                     MNHENMLIDHLLQSYRNLIHFARKFHINPSIMTNDTDILM"
     gene            1557..2774
                     /gene="fabB"
                     /locus_tag="PXE92_002483"
     CDS             1557..2774
                     /gene="fabB"
                     /locus_tag="PXE92_002483"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HDL5761670.1"
                     /translation="MKRVVITGLGVISSIGNNKEEVLESLKAGKSGIEFVPEFAEVGM
                     RSQVAGTIKLNPAELIDRKIYRFMGDAAAYAYLSMKEAIEDSGLTEEQVSNDRTGLVI
                     GAGTGSAHSQLVACDAVRGPRGVKAVGPYAVTKTMASSVSACLATPYKIRGVNYSISS
                     ACATSAHCIGHAMELIQLGKQDVVFAGGAEELSWECATEFDAMGAVSTKYNETPTKAS
                     RAYDANRDGFVIAGGGAVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAPSGEGA
                     ERCMRQAMATVNGEIEYINVHGTSTPVGDVKELGAIRNVFGDKTPAISSTKSMTGHSL
                     GAAGAHEAIYSLLMLDNNFIAPSINIETLDEQAQGMNIVTERQDKALTTVMSNSFGFG
                     GTNACLVFQRYSK"
     gene            2892..3038
                     /locus_tag="PXE92_002484"
     CDS             2892..3038
                     /locus_tag="PXE92_002484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761671.1"
                     /translation="MIKPLDSVYWRGKDVSEFFARKRLPDTAVQCVKDNELSYVYGYS
                     TSFV"
     gene            3007..3717
                     /locus_tag="PXE92_002485"
     CDS             3007..3717
                     /locus_tag="PXE92_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
                     /protein_id="HDL5761672.1"
                     /translation="MFMVIQLALYNLQTYEVGRNATTIFMTTDKVYTGGSTWTYLFAD
                     ADNKITSVREMNGFGDVEKEFKCGEYKEAVTIASKEDLAKRKTQPRLWSSIYMSPEQN
                     MMWVTDNTSKNLENAKQDAFKQCEKNGGRNCQMILSFSNMCLAFAQGYKDGQGFEDFG
                     YGIVSSLAEENALENCNQKGGSSCLLSAPAVCAIPCDILSNNKCMYDQPQIIIPGKNN
                     NQPINPPANGNGEHWLSN"
BASE COUNT         1195 a          624 c          824 g         1223 t
ORIGIN      
        1 cattaaaata tcagtatcat ttgtcataat gctcggatta atatgaaatt ttcgagcaaa
       61 atgaattaaa tttcgataac tttgtagtaa atgatcaatc agcatattct catgattcat
      121 cacttgctta attttccaat gttgacggtt ttgaagtaat tgaatttgtt tttctgacca
      181 agaccattgg ttaaccagct cgtctaaatc acgacttctc cagttgttat ttatttctcc
      241 ctcaaccgct tttgcataaa aacagactcg caagcggtct aatttcaccc actctttgcg
      301 tgatcttaag tgttctgtta ccaattcaag catggctaag tagggatcaa agtgatattc
      361 caaagcattg tcacttagta gttttttctt aaattctttg gagatgagct ttgttttagg
      421 ataagtgtga gcgtagcatt cgagcaataa aattttaatt gccgatttat aagggttatt
      481 aattcctttg tagagctgcc ataagcttgc accaaaaaat tcactggttg aaaggctgga
      541 aaaatcgccg aaatcaatcc attccgttaa gtcaatttca gggttattgt gaacattttg
      601 gtattcattt ttatgtaaat gcaaccagag taaacgctta ccggcaagta aaatagctga
      661 acgataaaat tcatctaata gaaaaaaatg ctgtgctgaa ccactgtgtt catcggttac
      721 gctactgtta taagtttggc tcttaaattg ttctgggttc attaaataaa tattgatgtc
      781 gatttggaat gtctttgccc attcttgcaa tttattaatt ttgagctcca ttaacttata
      841 ttgttcaatt gtaaaatggt tcggatagca tagccataaa tctaaatcag aacagcttgt
      901 ttgggtaata gtaccggtgc tacccatcga ataaagagca tcaaagctgg gatgggggcc
      961 caaatgatcg gcagagattg cttcatcaaa acggtaagaa accagaaatt gtttttgata
     1021 atcagagagt tgaaaatgcc aaatcccttg tggtgcattt tcaacataag ccggtaacac
     1081 agggtgatta agatgaataa gcaatggaat gagagagaaa acatgcataa aatgatgatt
     1141 attagcattg atagctcgtt ctattcggta tgcattaagt tgatcaattc gtgctttagt
     1201 agagtttaat ttttgggcga agctcccctg gttcgcccca atggcagcgc cttctacggc
     1261 tgttattttg ttggctgtca gggttaatgt tttcacgtca gctttcctta ctaaagtgtg
     1321 aactgtttag cattttagcg gaaaagtgat tattatgtaa tagggtaaaa aatcgggaaa
     1381 ttaaatttca ttccctattt tgcaaaaaat gtctgaaatt caaccgctat cttgatagaa
     1441 agagttcaga ccagtaatga aattgtgtaa aataatcaag ttttagtagc ttatttgagt
     1501 gaacaagtgt aagctgaatc aagtattttt cagatcaaaa tgatgaagga aacaaaatga
     1561 aaagagtcgt tattacagga ttaggtgtaa tttccagtat cggtaacaac aaagaagaag
     1621 tgttggaatc actaaaagca ggtaaatcag gcattgaatt tgtgcctgag tttgctgaag
     1681 tgggtatgcg tagccaagtg gcaggtacga ttaaattaaa tccggctgag ttaattgacc
     1741 gtaaaatcta tcgttttatg ggagatgctg cggcttacgc ttatctttca atgaaagaag
     1801 caatcgaaga ctcaggctta accgaagaac aagtttcaaa cgatcgtacc ggtttggtga
     1861 tcggagctgg tacaggctcg gcgcacagtc aacttgtagc ttgtgatgca gtacgtggcc
     1921 cacgtggtgt gaaagccgtt gggccttacg cagtaaccaa aacaatggca tcaagtgtgt
     1981 cagcatgctt ggcaacacct tataaaattc gtggtgtaaa ctattcaatc agctcagctt
     2041 gtgcgacttc agcacactgt attggacacg cgatggagtt aatccaatta ggtaaacaag
     2101 atgtggtgtt tgcaggtggt gcagaagaac tttcttggga atgtgcaacc gagtttgatg
     2161 caatgggtgc tgtttcaact aaatataatg aaacaccaac aaaagctagc cgtgcttatg
     2221 atgctaatcg tgacggtttt gtgattgccg gtggtggtgc agtggttgtg gtggaagagt
     2281 tagaacacgc tcttgctcgt ggtgccaaaa tctatgctga aattgtgggc tatggggcaa
     2341 cctcagacgg ttacgatatg gtcgcgccaa gtggtgaagg tgctgagcgt tgtatgagac
     2401 aggcgatggc aactgtaaat ggtgaaatcg agtatattaa cgtacacggc acttctactc
     2461 cagtgggtga tgtaaaagag ttaggggcga tccgtaatgt ctttggtgat aaaacgccag
     2521 caatttcatc aaccaaatca atgaccggac actcattagg tgcagcaggt gcgcacgagg
     2581 caatttattc attattaatg ttagataata attttattgc accaagcatt aatattgaaa
     2641 cccttgatga acaagcacaa ggtatgaata ttgtgactga acgccaagac aaagcattaa
     2701 caaccgtgat gtcaaacagc ttcggctttg gtggtactaa tgcgtgttta gtgttccaac
     2761 gctattctaa gtaacataaa aagagcaagt gaaagcttgc tcttttttct tttgaggtaa
     2821 ttattataaa tttcaaaata agttctttgc tatttgttat tttgtcatta tttttgaccg
     2881 cttgttctac aatgattaag ccactagata gtgtttattg gcgtggtaaa gatgtatctg
     2941 aattttttgc acgtaaacgt ttacctgata cagcggttca atgcgtaaaa gataatgaat
     3001 taagctatgt ttatggttat tcaactagct ttgtataatt tgcaaactta tgaagttggt
     3061 cgtaatgcaa ccactatatt tatgacaaca gataaggttt atacaggtgg atcgacttgg
     3121 acatatcttt ttgctgacgc tgataataaa atcacttctg ttcgtgaaat gaatggtttt
     3181 ggtgatgtcg aaaaagagtt taaatgtggt gaatataaag aagcggtaac cattgccagt
     3241 aaagaggact tagcaaagcg taaaacacag cctcgtttat ggtcatcaat ttatatgtca
     3301 cctgaacaaa atatgatgtg ggtgactgat aatacgtcta aaaatttaga aaatgcgaag
     3361 caagatgcgt ttaaacagtg tgaaaagaac ggtggtcgta attgccaaat gatcttatcg
     3421 tttagtaata tgtgccttgc ttttgcacaa ggttataaag atggtcaagg cttcgaggat
     3481 tttgggtatg gtatcgttag tagtcttgct gaagaaaatg cattagagaa ttgtaatcaa
     3541 aaaggtggtt caagttgtct tctttctgcc cctgccgtat gtgctattcc ctgtgatata
     3601 ttgtcgaaca acaaatgtat gtacgatcag cctcaaatta ttattccagg taagaataat
     3661 aaccaaccga ttaatccacc agctaatggc aacggtgagc attggttgag taattaaatc
     3721 attttagtaa aaagtgcgga aacgcacttt tttattgcct gcaagcggtc atttttagtg
     3781 aaaactttgc taaaaatctt ggtaaataaa aatttacaat ttatttttaa ttttatttaa
     3841 aaccattttt atattctatc ttagtt
//
LOCUS       DANMBQ010000179         3829 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.181, whole genome shotgun sequence.
ACCESSION   DANMBQ010000179 DANMBQ010000000
VERSION     DANMBQ010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3829
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.181"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(62..1189)
                     /locus_tag="PXE92_002486"
     CDS             complement(62..1189)
                     /locus_tag="PXE92_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HDL5761673.1"
                     /translation="MADSVKSHEQSSDEIDLIEIFRALWDKKWWIVITTFITTLLAGI
                     YAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRL
                     AQSQDTKNEFFITSNVYKTLAEGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGRT
                     LSFSAETPMEAQDTLGKLVQFINSKAFAVELEDFLVDFQNVLTALQYEKSLIQEDLSV
                     NKSVQLENLNKAYETAQKAGIKEYSKAFNQSDASNIAAALSDTKISLSDSKLADSSYL
                     FMLGEKYLKAQIDVANEKGVVYPPRYYQIDYQLKQLEPLFEKTKTVKTQTFSYQASPD
                     YPVIKDKPKKVIILLIGAFIGLMISCLSIILTHYLLESKFK"
     gene            1338..1679
                     /gene="erpA"
                     /locus_tag="PXE92_002487"
     CDS             1338..1679
                     /gene="erpA"
                     /locus_tag="PXE92_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HDL5761674.1"
                     /translation="MSDIQIPLIFTDAAARKVKSLIEGEENPNLRLRVYITGGGCSGF
                     QYGFTFDDQVNEGDLTIENQSVGLVVDPMSLQYLIGGTVDYTEGLDGSRFVVNNPNAS
                     STCGCGSSFSI"
     gene            complement(1784..2107)
                     /gene="yidD"
                     /locus_tag="PXE92_002488"
     CDS             complement(1784..2107)
                     /gene="yidD"
                     /locus_tag="PXE92_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDL5761675.1"
                     /translation="MVKTHSPEQKAGTTESINQPPRLSLLAKILLLPIYFYRYAISPL
                     IGPRCRFYPTCSTYAVEAIKIHGAIKGGYLAFKRILRCNPLSEGGEDPVPLCCKGNCK
                     HNDKK"
     gene            complement(2056..2430)
                     /gene="rnpA"
                     /locus_tag="PXE92_002489"
     CDS             complement(2056..2430)
                     /gene="rnpA"
                     /locus_tag="PXE92_002489"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDL5761676.1"
                     /translation="MKKLNFSRELRLLAPVQFKAVFEEPLRASTPQMTLLARENNLEN
                     PRLGLTVAKKHLKRAHDRNRIKRIVRESFRLKQHELPNFDFVFVAKGGIGKLDNATLF
                     ETLEKLWSRHIRLSKKPAQQNP"
     gene            complement(2466..2600)
                     /gene="rpmH"
                     /locus_tag="PXE92_002490"
     CDS             complement(2466..2600)
                     /gene="rpmH"
                     /locus_tag="PXE92_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011508608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDL5761677.1"
                     /translation="MKRTFQPSVLKRARTHGFRARMATKNGRQVLARRRAKGRKSLSA
                     "
     gene            2837..3799
                     /gene="hemH"
                     /locus_tag="PXE92_002491"
     CDS             2837..3799
                     /gene="hemH"
                     /locus_tag="PXE92_002491"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDL5761678.1"
                     /translation="MNQPQQIGILLANLGTPDEPTPSAVKRYLKQFLSDPRVIDLPKF
                     KWQAILNCIILPRRSPKVAKLYQSVWSEEGSPLLAISRQQQRAVQRYFDAKGKNVVVE
                     LGMSYGNPSIESATDNLIKQGVERIIVLPLYPQYSSTTTASVFDAFANGLKAQRKIVP
                     FDFIHSYHNDPLYIQALANSIDVKPDELLLFSFHGIPKRYETEGDFYAKHCQETAELV
                     AEKLGLPREKWYLSFQSRFGDEEWLQPYTDQTLESFPQKGIKKVAVVCPGFSADCLET
                     LEEITEENRENFEHAGGESYRYIPALNASGDHIKALVKLIEAKI"
BASE COUNT         1178 a          720 c          740 g         1191 t
ORIGIN      
        1 tactttttta caatagattc agctattttc acttgtaatg gagtgtaaca aataatcaaa
       61 ttcatttaaa tttactctca agcagataat gagttaggat aattgacaaa caagaaatca
      121 tcaaaccaat aaaagctcct attaataaaa taattacctt tttaggttta tcttttatta
      181 caggataatc cggcgaagct tggtaactaa aagtttgtgt tttaactgtc tttgtttttt
      241 caaataacgg ctctagctgt ttaagttggt aatcaatttg ataataacgt ggtggataaa
      301 caacaccttt ctcattagcc acatcaattt gagcctttag gtatttttcc cctaacataa
      361 ataaatatga actatctgct aattttgaat cagaaaggga gattttagta tcacttaaag
      421 ctgctgcaat atttgatgca tctgattgat taaatgcttt tgaatattct ttaatacctg
      481 ctttttgtgc agtttcatag gctttattta agttttccaa ctgaaccgac ttattcacag
      541 ataaatcttc ctgaattaat gatttttcat attgtaatgc agtaagcaca ttttggaaat
      601 cgactagaaa atcttctaat tcaacagcaa atgctttgct attaatgaat tgaaccaact
      661 taccaagggt gtcctgcgcc tccataggtg tctctgcaga aaaagatagt gtacgaccta
      721 ttgcattagg atctttcttt gcatcaggaa taataaagct ggtattttca ttactcaaat
      781 tggataaaac tgtgcgttgc ccctgctcat cttttccttc agctaacgtc ttatacacat
      841 tggaagtgat aaaaaattca tttttagtat cttgagattg tgctaatcgg ttaaaattgt
      901 tgaacaaact cgcagacaat gcatttggat caacaggatc tacacgcaaa atccgactat
      961 attctctgcg aacatttaaa tactcaccta actctgttaa tttaggggca ataactgttg
     1021 ccttagacgt ccattgctct tttgcagtaa atgcataaat accagcaagt aatgtggtaa
     1081 tgaatgttgt tataacaatc caccattttt tatcccatag agcacgaaaa atctcaatta
     1141 aatcaatctc atccgagctt tgctcatgac tttttactga atctgccata gtttcctcta
     1201 aaatttgcat gtttctgtac agcattatac ataattttct tatttccact gcattcattt
     1261 actctttttt aagattgcac ttcctatgta attattagat aatatccaat cacagtaaaa
     1321 ttttgatcta aaacaaaatg agcgatattc aaattccttt aatctttact gatgcggcgg
     1381 ctcgtaaagt aaaaagctta attgagggcg aagagaaccc gaatcttcgc ttgcgtgtgt
     1441 atattacggg tgggggctgt agtggattcc agtatgggtt cacctttgat gatcaagtca
     1501 atgagggaga ccttaccatt gagaatcaaa gcgttggctt ggtggttgac ccgatgagcc
     1561 tacaatattt aattggtggc acggtggatt ataccgaagg gctggacggc tcacgttttg
     1621 tcgtgaataa tccaaatgca agctcaacct gtggttgtgg ttcttccttt agcatttaat
     1681 tcactcgaat tattgcctta ttcaatatca gtctcacaag taaatttttt actaaaaatg
     1741 accgtttgta ttaaacaaaa tagcctaact tattgagttt aggctatttt ttatcattat
     1801 gtttgcagtt gcctttacaa caaagtggga caggatcttc gcctccctca ctcaaagggt
     1861 tgcaacgcag aatacgctta aacgctaaat acccaccttt aattgctccg tggattttaa
     1921 tcgcttcgac cgcataggtg gagcaggttg ggtaaaatcg gcaacgtggg ccaatcaatg
     1981 ggctgatagc atagcgatag aaataaatcg gtagcaatag aattttggct aataggctga
     2041 gacgaggtgg ctgatttatg gattctgttg tgccggcttt ttgctcaggc gaatgtgtct
     2101 tgaccatagt ttttccaatg tttcaaacag cgttgcgttg tctaatttgc caatgccgcc
     2161 ttttgccaca aatacaaaat cgaaattcgg caattcgtgt tgcttgaggc gaaaactttc
     2221 acgcactatc cgcttaatgc gattacggtc gtgagcccgt tttaaatgtt ttttggcaac
     2281 agttaagcct agacgaggat tttctagatt attctctcta gcaagaagag tcatttgggg
     2341 tgtgctggct cgaagtggct cttcaaacac cgccttaaat tgaacgggag ctaacaaacg
     2401 tagctcccga gagaaattta gcttcttcac acttaatcag aaaggtgttt tggctggttc
     2461 tgcaattatg cagataaaga tttacgacct ttagcacgac gacgcgctaa cacttgacga
     2521 ccgtttttag tagccatacg agcacggaaa ccgtgagtac gagcacgttt taatactgat
     2581 ggttgaaatg tacgtttcat tgcttatcta cctaaaattt aaaaagttgg cataaaatgg
     2641 tttctgccaa acaaggacca taaaaaagag ttgcaattct acaggcaatt aaaataaaaa
     2701 gcaagaaaca atccaagcac aactcgggtt gtttgcaaaa tttttgaaaa atacgaccgc
     2761 ttgttataat cgcagaaatt tatattggtt tgtggcataa tcgaaaaaat attaactatt
     2821 gatgagaaat agaacaatga atcaacccca acaaataggt attttgctgg ctaatttagg
     2881 tacgccagat gaacccacgc caagtgcggt gaagcgttat ttaaagcaat ttttaagcga
     2941 tcctcgtgtg atcgatctac caaaatttaa atggcaagca atcctaaact gcatcatttt
     3001 gccaagacgt tcgccaaaag tggcaaaatt atatcaatca gtatggagcg aagaaggctc
     3061 accgttattg gcgatttctc ggcaacaaca acgagcggta caacgctatt ttgatgccaa
     3121 aggcaaaaat gtggtggtgg aattgggaat gtcttacggc aatccaagta ttgaaagtgc
     3181 gaccgataac ctcatcaagc agggggttga gcggattatt gtgctaccgc tttatccgca
     3241 atacagtagc actactaccg cttcggtgtt tgatgcgttt gccaacggtt taaaagcaca
     3301 gcgtaaaatc gtgccgtttg attttattca cagctatcat aacgatccgc tttatattca
     3361 agcgttggct aactctattg atgttaaacc tgacgagtta ttactgtttt catttcacgg
     3421 cattcctaaa cgttatgaaa cggaaggtga tttttacgcc aagcattgcc aagaaacagc
     3481 agaattagtg gctgaaaagc taggtctgcc aagagaaaaa tggtatttgt ctttccagtc
     3541 ccgttttggt gatgaagagt ggctacagcc ttataccgat caaacccttg aaagcttccc
     3601 acaaaaaggg ataaaaaaag tggctgtcgt ttgcccgggc ttttcagcag attgtttgga
     3661 aaccttagaa gaaattacag aagaaaaccg cgagaacttt gaacatgccg gcggagaatc
     3721 ttatcgctac attccagcgt taaatgcgag tggcgatcat atcaaggcat tagtaaaatt
     3781 aatcgaagcg aaaatataat ataatttggg cggataataa atccgccca
//
LOCUS       DANMBQ010000180         3797 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.182, whole genome shotgun sequence.
ACCESSION   DANMBQ010000180 DANMBQ010000000
VERSION     DANMBQ010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3797
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.182"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            2..463
                     /gene="argR"
                     /locus_tag="PXE92_002492"
     CDS             2..463
                     /gene="argR"
                     /locus_tag="PXE92_002492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HDL5761679.1"
                     /translation="MDKIDSLSEAFKSLLKEEKFGSQSEIVAALQEMGFDNINQSKVS
                     RMLSKFGAVRTRNPKMEMVYQLPVELSVPTTSSPLKNLVVDIDHNDALIVVKTSPGAA
                     QLIARLLDSMGKAEGILGTIAGDDTIFITPVRNVQIEKLVKNVTQLFETSL"
     gene            513..1409
                     /locus_tag="PXE92_002493"
     CDS             513..1409
                     /locus_tag="PXE92_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HDL5761680.1"
                     /translation="MHIFITGGTGFIGRELIQQLKSENHHFTLLTRDTEAKSDDLQIN
                     YCYSLDELVDLNDFDAVINLAGEPIFDKRWTDEQKQKLIESRVNLTNKLSQLMNASSN
                     PPHTFLSGSAIGIYGDLPPSANFYTESTACYQDCFTNRLCQQWEAAALKAASDKTRVC
                     LIRTGTVFSPEGGALKKILPLYRCGLGGKLGSGKQYWAWISRRDHVQAVIFLLKNANC
                     SGAYNFVAPNPVRNEEFNRILANAVNRPAFFTVPEFALKLGLGERACLVLDNQQLIPE
                     KLLAASFVFQDPILTENVFLNP"
     gene            1454..3652
                     /gene="uvrD"
                     /locus_tag="PXE92_002494"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             1454..3652
                     /gene="uvrD"
                     /locus_tag="PXE92_002494"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HDL5761681.1"
                     /translation="MDFSLLLDGLNDKQREAVAAPIGNYLVLAGAGSGKTRVLTHRIA
                     WLIGVENVPESNILAVTFTNKAAAEMRHRIEYTLSQSGDNRLFGMWVGTFHSIANRLL
                     RSHYLDADLPQDFQIMDTEDQQRLLKRLLKLHNIDEKHFPPKHVAWYINAQKDKGKRA
                     KDIDHYNDPNEKKLVEIYQIYQDACDRAGLLDFAELLIRAYELFKTKSTILQRYQQRF
                     QQILIDEFQDTNNIQYDLIRLLAGDVGKVMIVGDDDQSIYGWRGAQVENIQRFLNDYD
                     NAQTIRLEQNYRSTGNILSCANELIANNDNRLGKNLWTDSGDGEPVDIYCAFNELDEA
                     RFVASQIKQWKEDEGDLAECAVLYRSNSQSRVIEEALIQANIPYRIYGGMRFFERQEI
                     KDALAYLRLIANRQDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQ
                     EEQLSGRATSSLLRFVELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEV
                     RIENLEELVTATKQFVKPDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSA
                     KGLEFPRVFIVGVEEGIFPSGMSFDEGRLQEERRLAYVGITRAKKKLTISYAESRRLY
                     GKEERHVPSRFIAELPEEHIREVRLRGSINRAASFNQANSFAKNPTKTTASFLNDDTW
                     KMGQKVNHAKFGQGTIINVEGSGEATRLQVAFVGNGIKWLIAKMANLERI"
BASE COUNT         1163 a          724 c          860 g         1050 t
ORIGIN      
        1 agtggacaag atagatagtt tatcagaagc gtttaaatcg ctgttaaagg aagaaaaatt
       61 cggctcgcaa agtgaaattg ttgccgcact acaagagatg ggctttgata atatcaacca
      121 atccaaagtt tctcgaatgt tatcaaaatt tggtgcagtc agaacccgta atcctaaaat
      181 ggaaatggtg tatcagctac cagtcgaatt aagtgtaccg actacctcca gcccacttaa
      241 aaatttggtg gtagatattg atcataatga tgcgttaatt gtggtcaaaa ccagccccgg
      301 tgcggctcaa ctgattgcac gtttgctcga ttcaatgggt aaagccgaag gtattttagg
      361 cactattgct ggcgatgata cgatttttat aacgccggta cgcaatgtgc aaattgaaaa
      421 attggtgaag aatgtgacac agttatttga aacatcatta tagaataagt aaaggaggac
      481 ttaatgttct ccttattttt taggagatta ttatgcacat ttttataaca ggtggtacgg
      541 gttttattgg gcgtgaatta atccagcaat taaaatctga aaatcaccac tttacacttc
      601 ttactagaga tacagaagcg aaaagtgatg atttacagat taattattgc tattcacttg
      661 atgaacttgt tgatttaaat gattttgatg cagtaattaa ccttgccggt gagccgattt
      721 ttgataaacg ttggacagac gaacaaaaac agaaattgat tgaaagccgg gttaacctaa
      781 cgaataagct cagtcaatta atgaatgcaa gctctaaccc tccgcatact tttctctccg
      841 gttcggcaat cgggatttat ggcgatttgc ctccttctgc aaatttttat acagaatcga
      901 ccgcttgtta tcaagattgc tttaccaacc ggctttgcca acagtgggaa gccgctgcac
      961 taaaagccgc aagtgataaa acccgagtgt gtttaattcg taccggcacg gtattttcgc
     1021 ccgaaggcgg agcattaaag aaaattttac cgctttatcg atgcggatta ggcggaaaac
     1081 ttggttcagg caaacaatat tgggcgtgga tcagccgccg ggatcacgta caagcggtca
     1141 tttttctgct caaaaatgca aattgttcgg gtgcttataa ttttgttgca ccaaatccgg
     1201 tgagaaatga agaatttaat cgtattttag cgaatgctgt taatcgcccg gcattcttta
     1261 ctgtgcctga atttgccttg aaattaggct taggcgaacg agcttgttta gtcttagata
     1321 atcaacagct cattccggaa aaactactcg cagccagttt tgtattccaa gatccgattt
     1381 taaccgagaa cgttttctta aacccataat ttaggctata atgctgtata aaagcacaga
     1441 ttaaaaggtg attatggatt tctcattatt attagacggt ttaaatgaca agcagaggga
     1501 ggcggttgct gccccgattg gtaattattt agtgttagcc ggggcgggtt cgggcaaaac
     1561 tcgggtttta acccatcgca ttgcgtggct gattggggtg gaaaatgtgc cggaatccaa
     1621 tattctggct gttaccttta ccaataaagc ggcggcggaa atgcgacatc ggattgagta
     1681 cactctttcc caatcgggcg ataatcgatt gttcggaatg tgggttggta ctttccacag
     1741 cattgccaac cgcttacttc gttcccacta tttagatgcg gatttaccgc aagatttcca
     1801 aattatggat accgaagatc agcaacgttt actcaaacgt ttactgaaac tgcataatat
     1861 tgatgagaaa cattttccgc caaaacacgt tgcgtggtat atcaacgccc aaaaagataa
     1921 aggcaaacgg gcaaaagata ttgatcacta taacgatccg aatgaaaaaa aattggtgga
     1981 gatttaccaa atctatcaag atgcctgcga ccgagccggt ttgttagatt ttgccgagct
     2041 gttgattcgg gcttatgaac tattcaaaac caaatcaacc attttgcaac gttatcaaca
     2101 acgttttcag caaattttga ttgatgagtt tcaagacacc aacaatattc agtacgactt
     2161 aattcgtttg cttgccggcg atgtcggcaa agtgatgatt gtcggcgatg atgatcagtc
     2221 tatttatggt tggcgtgggg cacaggttga gaatatccaa cgtttcttaa atgattatga
     2281 caacgctcaa accattcgct tagagcaaaa ttaccgctct accggcaaca ttttaagctg
     2341 tgccaatgaa ttaattgcca ataacgataa ccgcttaggc aaaaatttat ggacagatag
     2401 cggtgatggc gagcctgtgg atatttactg tgccttcaac gaacttgatg aagctcgctt
     2461 tgttgcctcg caaatcaagc aatggaaaga agacgagggt gatttggcgg aatgtgcggt
     2521 gttgtatcgc agcaacagcc aatctcgtgt gattgaggaa gctttaattc aagcgaatat
     2581 tccttatcgc atttacggtg gaatgcgatt ctttgaacgc caagaaatta aagatgctct
     2641 ggcttattta cgcttaatcg ccaatcgtca agacgatgcg gcgtttgaac gggtgatcaa
     2701 cacgccaacc agaggcattg gcgatcgtac cttagacaca ctccgtcaaa ttacccgtgg
     2761 tcgccaaatt acgctgtggc aagcaattca agtggcggtg caagaagaac aactttcagg
     2821 gcgtgccact tcttccttat tgcgttttgt agagctgatt aatgctcttg atcaagaaac
     2881 cgagcagatg tcgcttgccg aacaaaccga ttttgtgatt aaaaaatcgg gtttatatga
     2941 aatgtataag caagaaaaag gcgaaaaggg cgaagttcgg attgaaaact tagaagagtt
     3001 agttaccgca actaagcagt ttgtgaaacc tgacgaagcg gaagagctga ccgatcttac
     3061 cgcattttta acccacgcct cacttgaggc tggagaagcc caagcctcgc aacacgaaga
     3121 ttatgtcgaa ctgatgacgc tacattccgc caaaggattg gagtttcccc gtgtgtttat
     3181 tgtgggcgtg gaagaaggga ttttcccaag cggaatgagc tttgatgaag gcaggttgca
     3241 agaagaacgc cgtttggctt atgtcggcat aacccgagct aagaaaaaac tgacgattag
     3301 ctatgccgaa tcaagacggc tttatggtaa agaagaacgc cacgttccgt ctcgctttat
     3361 tgctgaatta cctgaagagc atattcgaga agtgagattg agaggctcaa ttaaccgagc
     3421 ggcaagtttt aaccaagcta attcatttgc aaaaaatccg acaaaaacga ccgcttcctt
     3481 tttaaacgat gatacttgga aaatggggca gaaagtgaac cacgctaaat ttggacaagg
     3541 cacgattatt aatgtggagg gctcaggtga agccacccgt ttgcaagttg cctttgtcgg
     3601 caacggcatt aaatggctga ttgccaaaat ggcaaattta gagaggattt aggcgaataa
     3661 aaagtttttt gcaggaatat agatggcgag atatattgcc ccttaacctt aaactaaggg
     3721 taaataaaat taaataatgc aagctagata taatgtaaag tatcagaaat aagatattaa
     3781 tttaagataa agaatag
//
LOCUS       DANMBQ010000181         3776 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.183, whole genome shotgun sequence.
ACCESSION   DANMBQ010000181 DANMBQ010000000
VERSION     DANMBQ010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3776
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.183"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            69..353
                     /gene="raiA"
                     /locus_tag="PXE92_002495"
     CDS             69..353
                     /gene="raiA"
                     /locus_tag="PXE92_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HDL5761682.1"
                     /translation="MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQ
                     PNSFQVEATIGTPLGDLVAKAEHEDLYTAIFDVKKKLEGQLIKLKEKNEH"
     gene            complement(529..651)
                     /locus_tag="PXE92_002496"
     CDS             complement(529..651)
                     /locus_tag="PXE92_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin A/B family lipoprotein"
                     /protein_id="HDL5761683.1"
                     /translation="MKKLVLTILAAATFLTACNTVDGVGEDVEKAGDKIQQAAQ"
     gene            complement(731..1708)
                     /gene="rluD"
                     /locus_tag="PXE92_002497"
     CDS             complement(731..1708)
                     /gene="rluD"
                     /locus_tag="PXE92_002497"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HDL5761684.1"
                     /translation="MTQQKILTAEITADLLGARLDQALAQLFPDYSRSRIKVWIESDL
                     VKVNGNIVNKAREKVFGGETVEITAEIEEEIRFEPQDIPLNIVYEDDDIIVINKPKDL
                     VVHPGAGNPDGTVLNALLHYYPPIAEVPRAGIVHRLDKDTTGLMVVAKNIPAQTHLVT
                     ALQKRRITREYEAIASGIMTQGGKVDEPMARHPTKRTAMAVHPMGKPAVTHYRIMERF
                     RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQLYGGRPRPPKGASDSFLSVLRGFQR
                     QALHATMLRLEHPITGEMMEWHAPLPDDFIELIQALKADYELYKDQLDY"
     gene            1849..2628
                     /locus_tag="PXE92_002498"
     CDS             1849..2628
                     /locus_tag="PXE92_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HDL5761685.1"
                     /translation="MRKFKSLATLVLAGLFVAGCSNSNKELEQSNVQDLYGKGQTYLQ
                     DGDYNSAIRYLEAVGTKGGQYSGLGEQTQLSLIYAQYKVGEYYKALDAAERFARSYPN
                     AANMDYVFYLAGLSNARLSDNFIQDFFGVNRASRAVDNVRNAYGNFQTIVQRYPQSQY
                     AQDAQNWMNYLFNRLAEHELAVVKFYDERNAYVAVVNRIEEMLRFYPNTLATKQALPY
                     LKEAYKQMNIPDAEQKTELLIQEYESKELPNPEKLKYGEQF"
     gene            2701..3732
                     /gene="tsaD"
                     /locus_tag="PXE92_002499"
     CDS             2701..3732
                     /gene="tsaD"
                     /locus_tag="PXE92_002499"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDL5761686.1"
                     /translation="MRILGIETSCDETGVAIYDEDKGLVANQLYSQIDMHADYGGVVP
                     ELASRDHIRKTLPLIQEALKEANLQPSDIDGIAYTAGPGLVGALLVGSTIARSLAYAW
                     NVPALGVHHMEGHLLAPMLEENAPEFPFVALLISGGHTQLVKVDGVGQYELLGESIDD
                     AAGEAFDKTGKLLGLDYPAGVAMSKLAESGTPNRFKFPRPMTDRPGLDFSFSGLKTFA
                     ANTIKANLNENGELDEQTKCDIAHAFQQAVVDTILIKCKRALEQTGYKRLVMAGGVSA
                     NKQLRADLAEMMKKLKGEVFYPRPQFCTDNGAMIAYTGFLRLKNDEQTDLSISVKPRW
                     AMTELPPIN"
BASE COUNT         1161 a          784 c          725 g         1106 t
ORIGIN      
        1 gtgatgagca tattttggtt attagaatat caacggcaaa agccttaact aaacaagagg
       61 aaaatgttat gtcattaaat atttcaagca aacaaatgga cattacccct gcaatccgta
      121 ctcatattga ggagcgttta gctaagttag aaaaatacca cacccaattg ataaacccac
      181 attttatgct gataaaacaa cctaactcat tccaagttga agcaacaatt ggcacccctt
      241 taggtgattt agtcgctaaa gctgaacatg aagatttata tactgcaatt tttgatgtta
      301 agaagaaatt agaaggtcag ttaattaaac taaaagagaa aaatgaacat tgatgtttaa
      361 actttacatc taataataag ggctaaatga gagatatcat ttagccctat tttttattcc
      421 aagagtaagc ggtaaaattt accgtatttt tcgcaaaaat ataccttatt gaacaattgt
      481 tcaataaggt atatatatta ttagcttctt agaattcgaa gctttttgtt attgtgcagc
      541 ctgctgaatt ttatcgcccg ctttttcaac atcctcacca acaccatcaa cggtattaca
      601 cgcagtcaag aaagttgcag ctgctaaaat agttaatact aattttttca tagaaagctc
      661 cttttttgtt gtttacttat gaaaacgatt tcaatatagc aactttacat tatttaagca
      721 acacctaaac ttaataatct aattgatctt tataaagctc ataatccgct tttagtgcct
      781 gaatcaattc aataaaatca tcaggtaacg gggcgtgcca ctccatcatt tcaccagtaa
      841 tcggatgctc taatctcaac attgtggcgt gtaaggcttg gcgttggaag cctcgtaaca
      901 ccgataaaaa cgagtcactc gcacctttag gtgggcgagg tctaccgcca tagagctgat
      961 cacctaataa tgggtgagca atatgcgcca tatgtacccg aatttggtga gtacgccctg
     1021 tttctaatct taaacgtaaa cgtgtgtaat tacgaaaacg ctccataata cgataatgcg
     1081 taaccgccgg ttttcccatt gggtgaacag ccattgccgt acgtttagtt gggtggcgag
     1141 ccattggctc atcaactttt ccgccctgtg tcataatgcc gctggcaatc gcttcatatt
     1201 cacgggtaat acgacgtttt tgtaatgcgg ttactaagtg agtctgtgcc ggaatgtttt
     1261 tagccactac cattaagcct gtcgtgtctt tatccaatcg gtgaacaatc cctgctcgag
     1321 gcacttctgc aatcggtgga taataatgta gcaaagcatt cagcactgta ccgtccggat
     1381 taccagcccc tgggtgaacc actaaatcct tcggtttatt aatgacgata atatcgtcat
     1441 cttcatacac aatatttaga ggaatatctt gaggctcaaa acgaatttcc tcttctattt
     1501 cagcggtaat ttcaacagtt tcaccaccaa atactttttc ccttgcttta ttcacgatat
     1561 tgccattaac tttcactaga tcactttcaa tccacacttt aatgcgtgaa cgagaatagt
     1621 ccggaaaaag ttgtgccaga gcctgatcta ggcgagcacc tagtaaatct gcagtaattt
     1681 ctgctgttaa aatcttttgt tgagtcatta aaccataaat cctaattagt catttgctta
     1741 cttgcgtgat gttatataga atagcgagat gaacttcata agttattctt agtcagagga
     1801 cattgtacat taacttttcg tcctagacac tttttatagg taaaacatat gcgtaaattt
     1861 aaatctcttg ccacattagt attagccgga ctgtttgttg caggttgttc aaattcaaat
     1921 aaagaattag aacaatccaa cgttcaagat ctttatggca aaggtcagac ctatttacaa
     1981 gatggagatt ataattctgc cattcgctac ttagaagcgg ttggaaccaa aggaggccaa
     2041 tattcaggac ttggtgagca aacccaacta agtttaattt atgctcaata taaagttggc
     2101 gaatactata aagcacttga tgccgcagaa cgttttgctc gctcttaccc gaatgcagct
     2161 aatatggatt acgtattcta tctagcagga ttatcaaatg cacgtctaag tgataatttt
     2221 attcaagact tctttggtgt aaatcgcgcc tctcgagccg tagataatgt tcgtaatgct
     2281 tacggtaact tccaaactat tgtacagcgc taccctcaaa gccaatatgc acaagatgct
     2341 caaaattgga tgaattactt atttaaccgt ttagcggaac acgaattagc cgttgttaaa
     2401 ttttatgatg aacgtaatgc ctatgtggct gtagtaaacc gtatcgaaga aatgttgcgt
     2461 ttttacccga atacactggc aaccaaacaa gcattgccat acttaaaaga agcatataag
     2521 caaatgaata tcccagatgc agagcaaaaa acggaactct tgatccaaga atatgaaagc
     2581 aaagagctac cgaatcctga aaaactgaag tatggcgaac aattctagtc gtacagagaa
     2641 taatgtgagg ggcgttcttc gccccttttg gttttctaac ttattttgac ttctccaact
     2701 atgcgaattt taggtattga aacctcttgt gatgaaaccg gtgttgccat ttatgatgaa
     2761 gacaaaggct tagtggcaaa ccagctttat agccaaattg atatgcacgc cgattacggt
     2821 ggcgtagtcc ctgaactggc ttctcgagac catatccgta aaacgttgcc actaattcaa
     2881 gaagccttaa aagaggccaa tctgcaaccc tcggatattg acggcattgc ctatactgcc
     2941 ggcccaggct tggtcggggc tttattggtc ggctcaacca ttgcccgttc gctggcttat
     3001 gcttggaatg ttccggcatt gggcgttcac catatggaag ggcatttact tgccccaatg
     3061 ttggaagaaa atgcccctga atttccgttt gtggcattat tgatttcagg tggacacacc
     3121 caactggtaa aagttgacgg cgttgggcaa tacgaactac tcggggaatc aattgatgat
     3181 gctgccggtg aagcctttga caaaacaggc aaactactcg gtttggatta ccctgccggt
     3241 gtagcgatgt caaaattagc cgaatccggc acgccaaatc gttttaaatt ccctcgtcca
     3301 atgaccgaca gaccgggact ggatttcagt ttctccggtt taaaaacctt tgctgcgaat
     3361 acgattaaag ccaatcttaa tgaaaatggt gaactcgatg agcaaaccaa atgcgatatt
     3421 gcccacgcat tccaacaagc cgtggttgat actattttaa ttaaatgcaa gcgagcgtta
     3481 gagcaaaccg gctataaacg cttagtaatg gcaggcggcg taagtgccaa taaacaatta
     3541 cgagcagacc ttgcggaaat gatgaaaaaa ttaaaaggcg aagtattcta ccctcgccca
     3601 caattttgca ctgacaacgg cgcaatgatt gcctacactg gctttcttcg cttaaaaaac
     3661 gatgaacaaa ccgacttaag cattagcgta aaaccccgct gggctatgac cgaattacca
     3721 ccgattaatt aacctttcaa gcggtgaaat ttcttgttaa ttttgcaaaa atttaa
//
LOCUS       DANMBQ010000182         3765 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.184, whole genome shotgun sequence.
ACCESSION   DANMBQ010000182 DANMBQ010000000
VERSION     DANMBQ010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3765
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.184"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..161)
                     /gene="rpmG"
                     /locus_tag="PXE92_002500"
     CDS             complement(<1..161)
                     /gene="rpmG"
                     /locus_tag="PXE92_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDL5761687.1"
                     /translation="MAAKGAREKIRLVSTAETGHFYTTDKNKRNMPEKMEIKKFDPVV
                     RKHVIYKEA"
     gene            complement(173..409)
                     /gene="rpmB"
                     /locus_tag="PXE92_002501"
     CDS             complement(173..409)
                     /gene="rpmB"
                     /locus_tag="PXE92_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_004997628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDL5761688.1"
                     /translation="MSRVCQVTGKRPAVGNNRSHAMNATKRRFLPNLHTHRFWVESEN
                     RFVTLRLTAKGMRIIDKKGIDAVLAEIRARGEKI"
     gene            complement(641..1378)
                     /gene="radC"
                     /locus_tag="PXE92_002502"
     CDS             complement(641..1378)
                     /gene="radC"
                     /locus_tag="PXE92_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HDL5761689.1"
                     /translation="MEEKMNDFFDEDSQEPTMMPREKLLTQGAASLTDSELLAIFLRT
                     GTKAVPVLALAESVLMAFGSLRQLLNANIDDFCKIYGLGKTKYIQLQASKEMTKRYLA
                     QQMEFSEMIQAPYMAIMYFQTELEEEEREVFMVLFLDNQNRLIYKEKMFFGTINQTAV
                     HPREIIKRALKYNAAAIIVAHNHPSGSCLPSESDRSLTKKIEMACELVDIRFVDHIIV
                     GKGDYFSFEEEKLEMKEHSFLQISDRK"
     gene            1528..2730
                     /gene="coaBC"
                     /locus_tag="PXE92_002503"
     CDS             1528..2730
                     /gene="coaBC"
                     /locus_tag="PXE92_002503"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDL5761690.1"
                     /translation="MLQNKKILVGISGGIAAYKTIEFIRHLKKANAEVRVVLTPAAEA
                     FVTPLTLQAISGNAVSTSLLDPQAELAMGHIELAKWADLIVIAPASADFIARLRMGMG
                     NDLLSTLCLATASPILLAPAMNQQMYKQIAVQENLSVLVNRGVQLIGPNSGFQACGDV
                     GAGRMSEPEEIYQAVLAHFSNNQDLEGLNVTITAGPTREAIDPVRYISNHSSGKMGYA
                     IANAFAERGAKVTLISGPVNLPTPKNVERINVESAVEMEQQAVKFAQKSAIFIGCAAV
                     ADYRMAAVSDQKIKKTDANDELTLKLVKNPDIIANVANLAENRPFVVGFAAETQNVAE
                     YAKSKLERKNLDMICANDVSGGQVFGQDQNALHLFWKNGEKTLPLADKSKLAESLVQE
                     IVKHYREK"
     gene            2730..3047
                     /locus_tag="PXE92_002504"
     CDS             2730..3047
                     /locus_tag="PXE92_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761691.1"
                     /translation="MKLLVSHFHQGEGKFPTFSAGTAVRLGSECVNYPNWFACEIDGW
                     KTFVPSHFISEDKLICDYNPTELVAAQGERVEFLELHYQWAIVKRENEIGWLPCEILR
                     VIG"
     gene            3044..3226
                     /locus_tag="PXE92_002505"
     CDS             3044..3226
                     /locus_tag="PXE92_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5761692.1"
                     /translation="MKIMQLTSNQYINDIKHILLSARQKAYQAVNSAMVEAYWKIGER
                     IVQEEKNMVKDQNEKV"
     gene            3213..>3765
                     /locus_tag="PXE92_002506"
     CDS             3213..>3765
                     /locus_tag="PXE92_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL5761693.1"
                     /translation="MKKYNIVFSADKNYLPYLEIALKSLLAHHNHLSIFILSTGDISH
                     HWIETLRPYLENRYSTLRLGYLDSNNLANFNSNGYITNSTYLRYYIEELFEHSDSPYW
                     IYLDCDLVVNGNITDPFTNLDFSFGSIAAIADPYVNKLKNHPYIYKNYFNAGVFYLNA
                     KHFSKQPFIQLTERFKENLPFGDQ"
BASE COUNT         1143 a          761 c          749 g         1112 t
ORIGIN      
        1 tttgcttctt tgtagataac gtgtttacgc acaactggat caaatttttt gatttccatt
       61 ttttcaggca tattacgttt gtttttatct gttgtgtaga agtgaccagt ttctgctgta
      121 gaaactaaac ggattttctc acgagcgcct ttagctgcca ttttttagct ccttagattt
      181 tttcgccacg agcacggatt tcagctaata ctgcatcaat gcctttttta tcaataatac
      241 gcataccttt cgcagttaaa cgtaaggtta cgaaacggtt ttcgctctca acccagaaac
      301 ggtgagtgtg aaggtttggt aagaaacgac gtttagtcgc attcattgcg tgtgagcggt
      361 tgttaccaac tgctggacgc ttgccggtta cttggcaaac tcttgacatt tgaatttctc
      421 caataatttt aagcttaaaa atggttcggg cgatctcaca aaaggcgttg ctcaaccaac
      481 ccctccgatt ttgattgcct cgtcaggcat taacccgacc acagtctatg taataaagac
      541 tgccgattat accgatttca tttgttatat tcaagtagaa tttatatgcg tatcttttac
      601 tgtttcagga gaaatgttaa aggttacata aagcaagcgg tcattttcta tcagaaattt
      661 gcaaaaatga atgctccttc atctctaatt tctcttcctc gaacgaaaaa tagtcccctt
      721 tgccgacaat aatatgatcc acaaagcgaa tatcaaccaa ttcgcacgcc atttcgatct
      781 ttttagttaa acttctgtcc gactcactcg gcagacaaga acctgagggg tgattatgag
      841 ccacaataat cgccgcggca ttatatttta acgctctttt aataatttct cgggggtgaa
      901 cagcagtttg attaatggtg ccgaagaaca ttttttcttt ataaatcaat cggttttggt
      961 tgtccaaaaa cagcaccata aaaacttccc gttcttcttc ctccaactcg gtttggaaat
     1021 acataatcgc catataaggg gcttgaatca tctcgctaaa ttccatttgt tgagccagat
     1081 agcgtttggt catctcttta gaggcttgta actgaatgta tttggttttg cctaaaccgt
     1141 aaattttgca aaaatcatca atatttgcat tcagtaattg gcgtaacgag ccaaatgcca
     1201 tcaacacact ctctgccaat gccagcacag gcacagcttt cgtaccagtc cgtaaaaata
     1261 tcgctaataa ttcggaatcg gttaatgagg ctgccccctg tgttaataat ttctcacgcg
     1321 gcatcattgt tggctcttga gaatcttcat caaaaaaatc gttcattttt tcctccatca
     1381 atttagttaa gcataaaaga gccaaccttt gcagacaaag ggatttattc aatttttcga
     1441 gcaagatcgc aaaaatagtg aagttgtgag caactcctta ttccgctaaa atatgcaaaa
     1501 taaatccacg ctttaaggat agtaaagatg ttacaaaaca aaaaaatttt agtcggcatt
     1561 tccggtggga ttgcagccta caaaaccatt gaatttatcc gccacttaaa aaaggcaaat
     1621 gcggaagtgc gtgtagtgct aaccccagca gcagaagcct ttgtaacgcc tttgacctta
     1681 caagcgattt ccggcaatgc ggtttccact tcactactcg acccacaagc cgaactggcg
     1741 atggggcata ttgagctggc aaaatgggcg gatttaatcg ttatcgcccc ggcaagtgcc
     1801 gattttattg ctcgcctgcg tatgggaatg ggcaacgatt tactttccac tctctgcctt
     1861 gcgactgcaa gcccgatttt gcttgcaccg gcaatgaatc aacaaatgta caaacagatt
     1921 gcggtgcaag aaaatctgtc tgttttagtc aatcgtggcg ttcagctcat cggcccgaat
     1981 agtggcttcc aagcctgtgg tgatgtgggg gctggcagaa tgtctgagcc tgaagaaatt
     2041 taccaagcgg tgttggctca tttctccaac aatcaagatt tagagggctt aaatgtaacc
     2101 attaccgccg gaccgactcg tgaggcgatt gaccctgtgc gttatatcag caaccacagc
     2161 tccggcaaaa tgggctacgc gattgctaat gcctttgccg aacgtggagc aaaggttacg
     2221 ttgattagcg gtccggtgaa tttaccaacg ccgaaaaatg tggaacgaat taatgtggaa
     2281 tctgcggttg agatggagca acaagcggtc aaatttgccc aaaaatctgc gatttttatt
     2341 ggctgtgcag cggttgccga ttaccgaatg gcggcagtct ctgaccaaaa aattaagaaa
     2401 accgatgcca atgatgaact cacgctaaaa ttggtaaaaa accccgatat tatcgctaac
     2461 gtcgccaatc ttgccgaaaa ccgccctttt gtggttggtt ttgccgcaga aacgcaaaat
     2521 gtggcggagt acgctaaatc gaaactcgaa cgcaaaaatc tggatatgat ttgtgccaat
     2581 gatgtctcag gcggacaagt gttcgggcag gatcaaaatg cgttgcattt gttctggaaa
     2641 aatggtgaaa aaacgcttcc tctggcggat aaaagcaaat tggcagaaag tttggtacag
     2701 gaaattgtaa aacattatcg agaaaaataa tgaaattact ggttagccat tttcatcaag
     2761 gcgaagggaa atttcctaca ttctcagctg gtactgccgt tcgattaggg agtgaatgtg
     2821 taaactaccc aaactggttt gcctgtgaaa ttgacggttg gaaaaccttt gtgccaagcc
     2881 attttattag cgaagataaa ttgatatgcg attataaccc aacggaactt gttgcagcac
     2941 aaggcgagag agtagaattc cttgaactac attaccaatg ggcaattgtc aaaagagaaa
     3001 acgaaattgg ctggctacct tgtgaaatct taagggtaat aggatgaaaa ttatgcaact
     3061 tacgtcaaat cagtatatca acgacattaa acatattctt ttatctgctc gccaaaaggc
     3121 gtatcaagcc gtgaattcgg caatggtcga agcctattgg aaaatcggtg aacgaattgt
     3181 gcaagaagag aaaaatatgg tcaaagatca aaatgaaaaa gtataatatt gtattttcag
     3241 cagataaaaa ctacctgcca tatttagaga ttgccttaaa atcactatta gctcatcata
     3301 atcatttatc tatttttata ttgagtactg gcgatatttc tcaccactgg atagaaacat
     3361 tacgccccta tttagaaaat agatattcca cattaagact tggctattta gattcaaata
     3421 atttagcaaa ttttaactcc aacggctata ttactaattc aacttaccta cgatattata
     3481 ttgaagaact atttgaacac agcgatagcc catattggat ttatttagat tgcgatcttg
     3541 tggttaatgg aaatattacg gatccattta caaacctaga tttttctttt ggaagtattg
     3601 ctgcaattgc tgatccttat gtaaacaaac taaaaaatca tccctatatt tacaaaaact
     3661 atttcaatgc tggtgtattt tatctaaatg caaagcattt tagtaagcaa ccatttatac
     3721 agcttactga gagatttaaa gaaaatttac catttgggga tcaag
//
LOCUS       DANMBQ010000183         3758 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.185, whole genome shotgun sequence.
ACCESSION   DANMBQ010000183 DANMBQ010000000
VERSION     DANMBQ010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3758
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.185"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..324)
                     /locus_tag="PXE92_002507"
     CDS             complement(<1..324)
                     /locus_tag="PXE92_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761694.1"
                     /translation="MTLETFNQQKAKFHEQEKAVLAIQTELDKAKNILEALQNEKAEF
                     VARQKTNLANIGTLSADEYVEIKNKNSGLQARIEYYQALIVDLENKCYAEQEILFQQQ
                     NELKQI"
     gene            complement(334..540)
                     /locus_tag="PXE92_002508"
     CDS             complement(334..540)
                     /locus_tag="PXE92_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HDL5761695.1"
                     /translation="MENTPAKQRFMKIDEVSAVTTLSETQIYRKMKAGDFPQSISIGA
                     NSKVWLESEIQQWIQRKIEQHRNQ"
     gene            complement(1010..2224)
                     /locus_tag="PXE92_002509"
     CDS             complement(1010..2224)
                     /locus_tag="PXE92_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5761696.1"
                     /translation="MTATKKPLSDTLLKNLKYSPNAKPIADSNGLFILAQKKAKVWIY
                     SYISPKTGKRSTKNRIGSYPQMSLAEARLKRDELNTLVLQGLDPFEHLAKMQREAKEK
                     QESIQSFAYKWADWKLSKGKCKPKTMEKCLQRLENHLFPRFEGYTLEDFTLTDTINRL
                     TDLDRIMPDTLHRIAGNLIEILDYAVLCGRINFNPISVIKKAFSSVSTTHQPAIMPEE
                     LAEFMQDLQKSNRTPQIKLLVEWQLLNILRPFEAVAVQWSDIDWETKTLNIPADRMKG
                     GKNPHSVPLTKQAIAILEEMKKYNGHHKHIFTHRTDRNKPANSQTVNNAIKRLSGGKY
                     KGLLVAHGLRSIASTYLHERFTTETLVIEACLSHTNKDTVMSAYHRKNWLDRRRGIMQ
                     EWADFVEQCKSI"
     gene            complement(2427..2502)
                     /locus_tag="PXE92_002510"
     tRNA            complement(2427..2502)
                     /locus_tag="PXE92_002510"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2467..2469),aa:Ile,seq:cat)
     gene            complement(2596..3333)
                     /gene="pgeF"
                     /locus_tag="PXE92_002511"
     CDS             complement(2596..3333)
                     /gene="pgeF"
                     /locus_tag="PXE92_002511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HDL5761697.1"
                     /translation="MDKIIPNWNVPKHIHALTTLRTGGVSKPPFDSFNLGDHVNDEPQ
                     DIAQNRALLVEKFQLPQAPLFLTQTHSTRVIELPYSGDNIKADAIYTNQPNQVCLVMT
                     ADCLPVLFASQDGSEIAAAHAGWRGLCDGILEATVEKFNCPPHEISAWLGPAIGPNAF
                     QVGSEVADQFCAFDPRAKEALIEDSTTSGKFLGNLYQIATQRLNKLGITAISGGEYCT
                     YSQPELFFSYRRDKQTGRMATLIWRTE"
     gene            complement(3365..3751)
                     /locus_tag="PXE92_002512"
     CDS             complement(3365..3751)
                     /locus_tag="PXE92_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL5761698.1"
                     /translation="MTVIHTENAPAAIGPYVQAVDLGNMVLTSGQIPVNPETGEIPSD
                     IVQQTRQSLNNVKAIIEQAGLTVADIVKTTVFVKDLNDFAKVNAEYQAFFQENEHPNF
                     PARSCVEVARLPKDVGIEIEAIAVRR"
BASE COUNT          931 a          724 c          810 g         1293 t
ORIGIN      
        1 gatttgtttt agttcattct gctgttggaa taatatttct tgctctgcgt agcatttatt
       61 ttctaaatca acaatcaacg cttgataata ttctatgcgt gcttgtaaac cactattttt
      121 atttttgatt tcaacatatt catctgctga aagcgtgccg atattggcta aattcgtttt
      181 ttgccgtgcg acaaattccg ctttttcgtt ttgcaatgcc tcaagaatat ttttcgcttt
      241 gtctaattcg gtctgaatag ctaaaacggc tttttcttgt tcgtggaatt tagctttttg
      301 ttggttaaat gtttcaagtg tcataatttg cccttattgg ttgcggtgtt gttcaatttt
      361 gcgttgaatc cattgctgga tttcactttc tagccatact ttgctatttg ccccaatact
      421 gatactttgg ggaaaatcgc cggctttcat tttgcgataa atctgcgttt ctgaaagcgt
      481 agttacggct gaaacttcat ctattttcat aaatcgctgt tttgctggtg tgttctccat
      541 tttgttttac tccgtaaaaa tttgctttgg cgtgctattg cctgctaacg tgtgaaagaa
      601 taaatcatct tggatttttt gctatttgtt agggctgtga aaggagattt tacagattag
      661 aggggcttaa ttctgatttg gaaaacttgc aagcggttat ttttctctga ttttttgcaa
      721 gttttcagcg gttctttcat cgttctgtca tcgagttttt aaaagtggtg tttctgcctg
      781 cgtaaatttg cgttttcttg cgtaaaattg cgtaataaaa aacggctata tgaaagtttt
      841 tcacgctata cggggcaatg tttgggctta attttgcatt tgcgtagaaa tcgagacttt
      901 aagtgtgcgg gcgaggcgtg ggatagacgg cacgggctgg gagctgatag gaaaaaatga
      961 aaatttttca tcaagcaaaa agaaaggcgg attgctccgc ctttgtcatt taaatgctct
     1021 tgcattgttc tacaaaatcc gcccattcct gcattattcc acgtctgcgg tctagccagt
     1081 ttttacggtg gtatgcactc attacggtgt ctttgttcgt gtgggataaa caagcctcaa
     1141 ttactagcgt ttcagtagta aaacgttcgt gtaaataggt gctggcaatg cttcttaaac
     1201 cgtgagccac taaaagccct ttatattttc caccgcttaa gcgttttatt gcattattca
     1261 cggtttggct attagccggt ttgtttcggt ctgttcggtg tgtaaaaata tgtttatggt
     1321 gtccgttata tttcttcatt tcctctagga ttgcgatagc ttgttttgtt agcggtacag
     1381 aatgcggatt ttttccgcct ttcattctat ctgccggaat gttgagcgtc ttagtttccc
     1441 aatctatatc gctccattgc accgctacgg cttcaaacgg tctaagaata ttcaagagtt
     1501 gccattcaac taataattta atttgaggcg ttctatttga tttctgcaag tcttgcataa
     1561 attcggctaa ctcttcgggc attattgctg gctggtgtgt cgtgcttacg ctggaaaacg
     1621 cctttttaat gacgctgatt gggttaaaat taattctccc acacaatacc gcataatcaa
     1681 gaatttctat taaattccct gctattctgt gcaaagtgtc gggcattatc cgatctaagt
     1741 ccgttaagcg gttgattgta tcggttaagg taaaatcttc cagcgtatag ccttcaaaac
     1801 gtgggaataa atgattttct aaccgctgta agcatttttc cattgtttta ggcttgcatt
     1861 ttccctttga tagcttccaa tcagcccatt tataggcgaa agattgaata gattcttgct
     1921 tttccttagc ttctctttgc attttggcta aatgctcgaa agggtctaag ccttgtaaaa
     1981 caagggtatt tagttcgtct ctctttaagc gtgcttcggc taagctcatt tgcggatagc
     2041 taccgattct attttttgtg cttcgcttgc ctgttttggg gctgatatag ctataaatcc
     2101 atactttcgc ttttttctgt gcaagaataa atagcccgtt gctgtctgcg ataggcttcg
     2161 catttgggga atatttgaga ttttttagta atgtgtctga aagtggtttt ttagttgcag
     2221 tcatttcttc taatccttga tatataaggg tttatcgaag tttatgatcc ctaaattttc
     2281 ccgttttcaa aatagggatc attttaggga tcataaacac taagatacaa tgcaactaaa
     2341 gaagacaata agagactata aaagaatcta agttcttgat tttatagtaa atttgagaca
     2401 atgaaagaca atatgcaacg cttagatggt ccccccagcc ggacttgaac cagcgaccaa
     2461 gcgattatga gtcgcctgct ctaaccactg agctatgggg ggatttgaaa agtggttgga
     2521 attatagaga aaaaccgagt agtcgtctag aggcagaaga ttactcggtt aattattgaa
     2581 cgagagaaaa tagggttatt ctgttcgcca aattaaggtt gccattcgcc cggtttgttt
     2641 gtctcggcgg taggaaaaaa acagttctgg ttggctgtag gtgcaatatt caccgcctga
     2701 aatggcggta atgcctaatt tattcagacg ttgggtggca atttggtaaa gatttcctaa
     2761 aaatttaccg cttgtagtgc tgtcttcaat aagggcttct ttcgctcttg ggtcaaaagc
     2821 acagaattgg tctgccactt cactcccgac ttgaaaagca ttcggtccga tagccggccc
     2881 tagccaagct gatatttcgt gtggcgggca gttgaatttc tctaccgtcg cctctaatat
     2941 gccatcgcat aacccacgcc agccggcgtg tgccgccgca atttccgacc cgtcttggct
     3001 ggcaaataat accggcaaac aatctgcagt catcactaag cagacttggt ttggttgatt
     3061 ggtgtaaatc gcatcggctt taatattatc acctgaatag ggaagttcaa tcactcgggt
     3121 gctgtgagtt tgggttaaaa acagcggagc ttgtggtaat tgaaatttct caaccaataa
     3181 agcacgattt tgagcgatat cttgtggctc gtcattaacg tgatcaccta agttgaaact
     3241 gtcaaaaggc ggtttgctta ctccgcctgt tcttaaggtc gtcagtgcgt gaatatgttt
     3301 aggcacattc caatttggaa taattttatc catttgcaaa aaatctcaag aaaatgaccg
     3361 cttgttatcg gcgtactgca atcgcttcga tctcaatgcc aacatctttt ggtaaacgag
     3421 ccacttctac gcaagaacga gccggaaaat tagggtgttc gttttcttgg aagaaggctt
     3481 ggtattccgc atttaccttt gcgaagtcgt taagatcttt gacaaatacg gtggtcttta
     3541 caatatcggc aacggttaag ccggcttgtt cgataatggc tttcacgttg ttcagagatt
     3601 ggcgggtttg ttgcacaata tcactcggga tttcgccggt ttcaggattc acgggaattt
     3661 gcccagaagt taaaaccata ttgcctaaat caactgcttg cacataaggc ccaatcgctg
     3721 ccggtgcatt ttctgtgtgg ataactgtca tcttgtgt
//
LOCUS       DANMBQ010000184         3720 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.186, whole genome shotgun sequence.
ACCESSION   DANMBQ010000184 DANMBQ010000000
VERSION     DANMBQ010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3720
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.186"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(130..1632)
                     /gene="ppx"
                     /locus_tag="PXE92_002513"
     CDS             complement(130..1632)
                     /gene="ppx"
                     /locus_tag="PXE92_002513"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HDL5761699.1"
                     /translation="MSSNIAPREFAAIDLGSNSFHMIVARIVNGSIQVLSRLKRRVRL
                     ADGLDENLVLSQDAIDRGIACLALFAKRLEGFSAENVKVVGTYTLRRAINNQAFLEQA
                     KAVFPYPISIISGQQEARLIYSGVSHTQPETGRKLVVDIGGGSTEMTIGDDFTPIRAE
                     SRHMGCVSFAKRFFPQGELTIERFDSAYQLAMEKIEDLMWEYKELGWDYALGSSGTIK
                     TVHQVLIANGYRDGLITESRLQKIIDICLEFKSLNEIKLRGLLDERADVLVPGLAILL
                     ALFHTFRIDVLRYSNGALREGVMYGLEKSFQVGDIRQRTAEALAEQFALDKQQAKRVE
                     HTALILFDQIKTWKNRRQVQDLRSMLKWASLLHEIGIVVNHNNVHRHSAYLIANRDLP
                     GFDFEQQTLLSVLMRYHLKGFKRSDIRSINRYQCRDVLTLVRVFRLAVLLNRSRQATV
                     VPKQLNLVIENNAWQLTFEQGFLANNPLISIDLEEEQKILASTNLQFAVS"
     gene            1828..2157
                     /locus_tag="PXE92_002514"
     CDS             1828..2157
                     /locus_tag="PXE92_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HDL5761700.1"
                     /translation="MSEVNKSFHDMLEYVHLYRLKNKLHRETADNDRKIRDNQKRVLL
                     LDNLTQYITDEMSIEEVRAIISNMRDDYENRVDDYMIRNAELSKQRREIRQKMASHKQ
                     APTNKKA"
     gene            complement(2221..3651)
                     /locus_tag="PXE92_002515"
     CDS             complement(2221..3651)
                     /locus_tag="PXE92_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIBC"
                     /protein_id="HDL5761701.1"
                     /translation="MSTLTYLQKIGRALMVPVAALPAAALLMGIGYWIDPDGWGTNSQ
                     LAALLIKSGAAIIDNMSILFAVGVAFGMSKEKDGAAALSGLVGYLVITTLLSPGTVAQ
                     LKGIAVDQVPAAFGKINNQFIGILVGVISAEIYNRFYQVELPKALSFFSGKRLVPIVV
                     SFILLYVWPVIFGALVSFGESIKDMGALGAGIYAFFNRLLIPVGLHHALNSVFWFDVA
                     GINDIPNFLGGAKSLAEGKAVIGVTGMYQAGFFPMMMFGLPAAALAIYHSAKPAKKMQ
                     VASIMFAAALASFFTGITEPLEFAFMFVAPVLYVVHALLTGLSVYIAASMEWIAGFGF
                     SAGLVDLVLSTRNPLAVQWYMLLAQGIVFAVIYYVLFRVVIQAFNLKTPGREEDSEVQ
                     TVNTVSRSEQAAKFVEALGGKENITSIDACITRLRLTLNDTAKADETKLKALGSKGNI
                     KLGENGYQVILGPEAEFVADAMKKLN"
BASE COUNT         1212 a          850 c          647 g         1011 t
ORIGIN      
        1 atcaaaaatg agaagttgat caaattttaa aaaatacttt ttgcaaaaaa ttagctaaat
       61 ttgaccgctt gttcgcaaaa gggaatgcaa taaacgaaaa aggaagcctt cgcttccttc
      121 atttaaatgt taagagaccg caaactgaag atttgtactc gccaatattt tttgctcttc
      181 ttctaaatct attgaaatca gtggattatt cgctaagaag ccctgttcaa aggtaagttg
      241 ccaagcatta ttttcaatca ccaaattcaa ctgtttcggc actacagtcg cttggcgaga
      301 acggtttaat agcaccgcta gccggaaaac ccgtaccaac gttaatacat ctctacattg
      361 gtaacggttg atactacgaa tatccgagcg tttgaatcct ttaaggtggt atcgcattaa
      421 taccgataga agggtttgct gttcaaaatc aaatcccggt aaatctcggt ttgcaatcaa
      481 ataagcagaa tgacgatgca cattattgtg gtttacaaca ataccaatct cgtgtaataa
      541 acttgcccat ttcagcattg aacgcagatc ttgcacttgg cggcggttct tccaagtttt
      601 gatttggtca aataaaatca acgccgtatg ctccaccctt tttgcttgct gtttatctaa
      661 agcaaattgc tcagctaacg cttctgcagt ccgttggcga atatccccaa cttggaaact
      721 tttctccaaa ccatacatta ccccttctct taaagccccg ttggaataac gtaatacatc
      781 aattctaaaa gtgtgaaaaa gtgctaaaag aatagctaag cccggaacta gcacatctgc
      841 tcgttcatca agtaagcctc gtagcttaat ctcatttaac gatttaaact ctaggcaaat
      901 atcaataatt ttctgtaggc ggctttctgt aattaagcca tcacgatagc cattggcaat
      961 cagcacttga tggacggttt taatcgtacc ggaagaacct aaagcatagt cccaacctaa
     1021 ctctttgtac tcccacatta aatcttcgat tttttccatt gcaagctgat aggcactatc
     1081 aaaacgctca atcgttaatt ccccctgcgg gaaaaagcgt tttgcaaaac tcacacaacc
     1141 catatgacga ctttccgctc gaatcggggt aaagtcatca ccaatagtca tttccgttga
     1201 accaccgcca atatctacca ctaattttct gccagtttcg ggttgggtat ggctaacgcc
     1261 cgaataaatc agcctcgcct cttgttgtcc ggaaataatg gaaatcgggt aaggaaatac
     1321 tgctttcgct tgctccagaa aagcttggtt attgattgct ctacgtaagg tataagtgcc
     1381 aaccaccttc acattctctg cagagaaccc ttctaaacgt tttgcaaata aagctaaaca
     1441 agcaatgcct ctatcaatcg catcttggct taatactaag ttttcatcaa gcccatctgc
     1501 cagccgtaca cgccgtttca aacgggaaag cacttgaatg gaaccattta cgatacgggc
     1561 tacaatcata tgaaagctgt tcgagcctaa atcaatagct gcaaactctc taggagcaat
     1621 atttgatgac ataatgaaac cctgtaccaa taactgaaat aagtaagata ttaccatttt
     1681 tgagccctag atatcactac aaatttagcg ttattcgcga gaattaattt aaatcataaa
     1741 atgtgataaa tttttttgac gaattgacgg aaaaagaata ggatttacga gcttacttaa
     1801 ttcaacacta catcaaggga gattgatatg tctgaagtga ataaatcatt ccacgatatg
     1861 ctggaatatg tgcatcttta tcgtctaaaa aacaaactgc accgtgaaac ggcggataat
     1921 gatcgcaaaa ttcgagataa tcagaagcgt gtacttttat tagataacct aacgcaatat
     1981 attaccgacg aaatgtctat cgaggaagtt cgagcgatta tttccaatat gcgtgatgac
     2041 tatgaaaatc gagtagatga ttatatgatc cgtaatgcgg aactttccaa acaacgccgt
     2101 gaaatccgcc aaaaaatggc ctctcacaaa caagcaccaa ccaataaaaa agcataaaaa
     2161 gccaagcggt ctgatttgca aaaaaatatg caaatcagac cgcttgtgat taagcagaga
     2221 ttaattcagc tttttcattg catctgccac aaattctgct tccggtccca aaatcacttg
     2281 gtagccattc tcgcctaatt tgatattacc ttttgaccct aacgctttca atttggtttc
     2341 gtctgctttc gccgtatcat ttaaggttag gcgtaagcgg gtaatacaag catcaatgct
     2401 ggtaatattc tctttaccac ctaatgcttc aacaaatttg gcagcttgtt cgctacgaga
     2461 aacagtattc actgtttgta cttcgctatc ttcctcacgc cccggcgttt ttaaattaaa
     2521 ggcttggatc actactcgga acaatacata gtaaattact gcgaatacga taccttgggc
     2581 caataacata taccactgca ctgccagcgg atttcgtgtc gataacacta aatcgaccaa
     2641 ccctgcacta aaaccgaaac cggcaatcca ttccattgag gctgcaatat aaacagataa
     2701 tccggttaat aatgcgtgaa ccacataaag cacaggtgca acaaacataa aggcaaattc
     2761 aagcggttcc gtaatgccgg tgaagaacga agctaaagca gcagcaaaca taatagaggc
     2821 tacttgcatt ttcttagccg gtttcgcact gtggtaaata gctaatgctg ccgcaggtaa
     2881 gccaaacatc atcatcggga agaaaccagc ttgatacata cctgttactc ctatcactgc
     2941 tttgccctca gccaatgatt ttgccccacc taagaagttt ggaatatcat taatgcctgc
     3001 aacatcaaac cagaaaaccg agtttaatgc gtggtgtaat ccaaccggaa ttaataaacg
     3061 attaaagaaa gcataaatac ctgcccctaa cgcccccata tctttgatag attccccaaa
     3121 agagactaaa gcaccaaaaa taaccggcca gacataaagc aagataaatg acaccacaat
     3181 cggcaccaat cgtttaccgc taaagaaaga caatgctttc ggtaactcta cttggtagaa
     3241 acggttataa atttcggctg aaataacccc tactaagatc ccgataaatt ggttgttgat
     3301 tttaccgaat gctgcaggca cttgatcaac tgcgatccct tttagctgag caacggtccc
     3361 cggagacaac aaagtggtaa ttactaaata cccgactaaa ccggataatg ctgctgcccc
     3421 atctttttct tttgacatac caaatgccac acccacggca aatagaatag acatattatc
     3481 aataattgcc gccccagatt taatcagcaa tgccgctaat tggctatttg ttccccagcc
     3541 gtccggatca atccaatagc ctatacccat caataatgct gctgctggta atgcagcaac
     3601 cggcaccatt aatgcacgcc caattttttg taaataggtt aatgtactca taaaagcctc
     3661 caaaaatacc tcataatgag taacttaagc atagaaaaaa accgattaaa gaacaatcaa
//
LOCUS       DANMBQ010000185         3673 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.187, whole genome shotgun sequence.
ACCESSION   DANMBQ010000185 DANMBQ010000000
VERSION     DANMBQ010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3673
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.187"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(97..2661)
                     /locus_tag="PXE92_002516"
     CDS             complement(97..2661)
                     /locus_tag="PXE92_002516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HDL5761702.1"
                     /translation="MRIAKIIFSALLSLLVLGGVIGGLLYMHFKSDLPDVATLKNVEL
                     QQPMQIFTLDGKLIGEVGEERRIPVKLDDIPPMLVKAILATEDARFYEHKGIDPKGIM
                     RAIWRTSQGDTQGASTITQQLAKNFFLTPERSLERKAKEAILALEIEQVLSKNEILEL
                     YLNKIYLGYRSHGVAAAAKTYFNKSLKDLTLSEIAIIAGLPKAPSTMNPLYSVKRAED
                     RRNVVLGRMLETGDITKEEYEKAKAEPVVANYYGATLEFRADYVTEMVRQEIVKRYGE
                     NIAYNKGLKVYATVLSADQKAAQDALRENLIDYDRRHGWRGAEKLWTGSSAWDDEKII
                     DHLSKLPKSEPFTPAVVMQADKSKYTILLANGDISVLKRTNASFAPKGLKAGEQIWVR
                     QNKNREWALGQIPEVNSALVSINSENGAIESIVGGFSFEQSRFNRATQSLVQVGSAIK
                     PFIYTAAMNKGLSLSTTISDSPIVIKKKGQKEWRPKNADGVYGGPLRTRVALGKSKNM
                     VAIRILQMAGIDYVADYLQRFGFNRNQYVATESLALGAASFTPLEMARAYAVFNNGGY
                     LIEPYIIDRIIDAQGYELYQANPVVACNSCDSPVVYPEPKYFESVKIHDEAQVGVQTI
                     ANSSNNDDDDVVEDVGDSEPELQANNSEKNAPSLMAESSHHIKGLRYAPHVISDELAF
                     LMRSALATAITGEPEYGWRGTSYKMLNTIKRADVGGKTGTTNNAKATWYAGFGANIST
                     VVYVGFDDNKRVLGRGASGSSTALPAWTNYMKVALSDKPVEKSTLPKNIIEVNIDPNS
                     GFLGNGRKEYFIKGTEPTKRYIVERAYTEKAPQKTESAPLRLGLPPPGVLKSGELF"
     gene            2785..3483
                     /locus_tag="PXE92_002517"
     CDS             2785..3483
                     /locus_tag="PXE92_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComA"
                     /protein_id="HDL5761703.1"
                     /translation="MKLLKAHSKTPSNRIILGLSEDEQRYCLVKNKAEKFTVFWQAKP
                     ASIEELIGNLTPQEQAMMTLVRPIPYQYIWRKTVFMANTLNEAQLHRKVIHILKNEQP
                     LALDLLNIDYQRFPSSNDNLDKVVIYAVRKSYTENLSQFNSILDCELHCYARAIIHLT
                     QSQNNQPAPCFSFKQKYFQFTETELLILQTEPEDCIHLSDLKIDHLEIECEQEKQLYC
                     LALGASLWNGKVLI"
     gene            3459..>3673
                     /locus_tag="PXE92_002518"
     CDS             3459..>3673
                     /locus_tag="PXE92_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761704.1"
                     /translation="MEWQGIDLSANRKNNWFAGSDKGIKNVIYTLLLSALISLALIFL
                     YLQKNQEIQPLAQQLELVKTDILNIEN"
BASE COUNT         1118 a          812 c          610 g         1133 t
ORIGIN      
        1 taactcacaa atcgcccaaa ataaaattgg cacttattat cgcaagaaat ccccctattt
       61 ttcaactttt aagagcatta tccttgtaat aaattattag aataattcac cgctttttag
      121 cacccctggt ggaggtaatc ctaaacgtaa cggcgcagat tctgtttttt gaggcgcttt
      181 ttcagtataa gctctctcta caatataacg ttttgtaggc tcagtaccct taataaaata
      241 ctctttacgt ccatttccta agaaaccact attagggtca atattaacct caataatatt
      301 ttttggaagg gtactttttt cgacaggctt atctgacaat gcaactttca tataatttgt
      361 ccaagctggt aaagcagtac tagaacctga agcacctcta cctaatactc ttttattatc
      421 atcaaagcca acgtacacaa cagtagaaat attagcacca aatcccgcat accaagttgc
      481 cttggcatta ttggttgtac cagtcttccc gcccacatcc gctcgtttta tcgtattgag
      541 cattttatag cttgttcctc gccagccata ttcaggctca ccagtaattg ctgtagctaa
      601 agcactacgc attaaaaaag cgagttcatc actaataaca tgaggagcgt aacgtaaccc
      661 tttgatatga tgagaagatt ctgccattaa gctcggcgca tttttctcgc tattgttcgc
      721 ttgtaattca ggttctgaat cgccaacatc ttccacaaca tcgtcgtcat cattattcga
      781 ggaattcgct atagtttgta caccgacttg agcttcatca tgaattttga ctgattcaaa
      841 atatttaggc tcagggtaaa caactgggct atcgcaacta ttacaagcta ctacaggatt
      901 tgcttgatat aactcgtagc cttgggcatc aataatacgg tcaatgatat atggttcaat
      961 caaataacct ccattattaa atactgcata agctcgagcc atttctaatg gcgtaaaaga
     1021 tgcagcaccc aatgcaagag attctgttgc aacatactga tttcggttaa agccaaaacg
     1081 ttgtaagtag tctgcaacat aatcaatccc tgccatttgt aatatacgaa tagccaccat
     1141 atttttcgat ttacctaatg caacacgagt tctcaacggg ccgccataaa ccccatcggc
     1201 atttttaggt cgccactctt tttgcccttt ctttttaatg acaataggag aatcgctaat
     1261 tgttgttgaa agacttagcc ctttattcat tgccgctgtg taaataaacg gtttaatcgc
     1321 agagcctacc tgaactaatg actgagtcgc acgattgaaa cggctttgtt caaagctaaa
     1381 gcctccaacg atagattcaa tggcaccgtt ttcactatta attgacacta gggctgaatt
     1441 tacctccgga atttgtccta aagcccactc cctattttta ttttgacgta cccaaatttg
     1501 ttcacctgct tttaaccctt taggtgcaaa agaagcattt gtacgtttta aaacagagat
     1561 atcaccattt gccaataaaa ttgtatattt tgatttatct gcttgcatta caacagctgg
     1621 tgtaaacggc tctgattttg gcagcttact taaatgatcg ataattttct catcgtccca
     1681 agcagaacta cctgtccata atttttcagc gcctcgccaa ccatgacggc ggtcataatc
     1741 aatcaaattt tcacgtaacg catcttgtgc tgctttttgg tctgctgaaa gtaccgtggc
     1801 gtacactttt aagcctttgt tataagcaat attttctcca tagcgtttca caatttcttg
     1861 acgaaccatt tctgtcacat aatccgctcg aaattctaat gtcgcaccat agtagttagc
     1921 tactactggc tctgctttag ctttctcata ttcctctttt gtaatatctc cggtttctag
     1981 cattctccca agcactacat tacgacggtc ttccgcccgt tttactgaat aaagtggatt
     2041 catcgttgaa ggcgcttttg gaagccctgc aataattgct atttcagaaa gggttaaatc
     2101 tttcaaagat ttattaaaat aagttttagc cgcagcggca acaccgtgag aacgataccc
     2161 taggtaaatt ttgtttaaat acagctccag aatctcattt ttactgagaa cctgttcaat
     2221 ttctaaagct aaaattgcct ctttggcctt acgctctaaa ctacgttcag gtgttaagaa
     2281 aaagtttttc gccagctgct gggtgattgt acttgcgcct tgagtatctc cctggctagt
     2341 gcgccatatt gcacgcataa tacctttagg atcgatccct ttatgctcgt aaaaacgtgc
     2401 atcttcggta gcaagaatcg cttttactaa catcggtgga atatcatcaa gcttgaccgg
     2461 aatacggcgt tcttctccta cttcaccaat taatttacca tctaaggtaa aaatctgcat
     2521 aggctgctgt aactctacat ttttcagcgt tgccacatca ggcaaatcag atttgaaatg
     2581 catgtacagt aaaccaccaa ttaccccacc taaaaccaag agtgaaagta aagcactaaa
     2641 tattattttt gcgatccgca tcgaaaaaat ctcttttggt taatgacgaa acataaattt
     2701 aaagccaata ttaggtcact aagtataagc taaaaacgct tacttcgcat aactaattgc
     2761 aaaactttcc ttactatact tactatgaaa ttacttaaag cacattcaaa aacaccttca
     2821 aaccgtatca tcttaggctt aagtgaagat gaacaacgtt actgcttagt caaaaataaa
     2881 gcagaaaaat tcaccgtttt ttggcaagcc aagcctgcga gcatcgaaga gcttatcggt
     2941 aatctcaccc cacaagaaca agcaatgatg acgctggttc gcccgatccc ttaccaatac
     3001 atttggcgaa aaaccgtttt tatggctaac accctcaatg aagctcaatt acaccgtaag
     3061 gtaattcaca ttttaaaaaa tgagcagcca cttgcattgg atctactcaa tattgactat
     3121 cagcgatttc caagcagcaa cgataatctg gataaagtgg ttatctacgc cgtgcgaaaa
     3181 agttataccg agaatttgag ccaatttaac agcatcttag attgtgagct gcattgctat
     3241 gcacgggcta taattcattt aacacaatcc caaaataatc agcctgcgcc ctgtttttca
     3301 tttaaacaga agtacttcca atttaccgag acggaattac tgatattgca aacagaacct
     3361 gaggattgta ttcatctatc tgatctcaaa attgaccatc ttgaaatcga gtgtgagcaa
     3421 gagaaacagc tatattgcct cgccttagga gcaagtttat ggaatggcaa ggtattgatt
     3481 taagtgctaa tcgaaaaaat aactggtttg ccggcagtga taaaggcatc aaaaacgtga
     3541 tttatacact tttattatct gccctcatta gcttggctct gatttttctc tatttgcaaa
     3601 aaaatcaaga aattcaaccg cttgcacagc aattagagct ggtaaaaacc gatatattaa
     3661 atattgaaaa taa
//
LOCUS       DANMBQ010000186         3503 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.189, whole genome shotgun sequence.
ACCESSION   DANMBQ010000186 DANMBQ010000000
VERSION     DANMBQ010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3503
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.189"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..344
                     /locus_tag="PXE92_002519"
     CDS             <1..344
                     /locus_tag="PXE92_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDL5761705.1"
                     /translation="DFQRVINAAGYSMKGLKAAYINEAAFRQEIWCATILFPLGLILG
                     ETNIEKALLVGTVLLVLVTELLNSAVESVVDRIGADFHELSGRAKDIGSAAVFMAMVL
                     LAITWILILFC"
     gene            381..2024
                     /locus_tag="PXE92_002520"
     CDS             381..2024
                     /locus_tag="PXE92_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HDL5761706.1"
                     /translation="MRLKKTLLSVALLSATSAMAYETGKTYRFTVLHTNDIHGHFWQS
                     DKGEYGLAAQKTLVDNIRKEVAEKGGSVLMLNAGDANTGVPESDMQNARPDIEGMNAI
                     GYDAMVLGNHEFDYPLQILSMQEKWAKFPFISANVINKKTDKPIVKPYVMLERGGLKI
                     AVIGLTTEDTAKLGNPDVTENAFFKNPIETAKNTLAEINQKEKPDVRIALTHMGYYFD
                     GKHGTNAPGDVTMARTLEKGAFDLIIGGHTHDTVCIDEKGQFKAKYTPGEECKPDFQN
                     GTWIVQAGEWGKFVGRADFEFKDGKATLVKYELIPVNLKKTIKKEDGTKEYRLYQPEI
                     KADEATYTLLKKYQDEGDKKLNIEVGRVKGLLDGKREHIRFQQTNLGRLIAQSQMERV
                     KADIGIMNSGGIRTSLEEGVITYKHILTVQPFGNMIATVDLKGQELLDTLTTIALKEV
                     DTGAYPQFAGISMVVDRTAKTISDVKIGGKPFDKEKTYKVSLPDYVAAGGDGYPLLKK
                     HPSYVNTGFIDAEMLKKFFEENKIIEADKYDPKNQIIFK"
     gene            complement(2231..3100)
                     /locus_tag="PXE92_002521"
     CDS             complement(2231..3100)
                     /locus_tag="PXE92_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL5761707.1"
                     /translation="MSSRGKILNTISSLQNSLTKTEKKIAAAILSQPELLSQCSLSEV
                     AKQLDVGEATFIRFCRTLGFKGYTDFKLELAIELATQNQDNRVLLDTDVSESDTSKDI
                     AEKLKVSLDNVIEETINLLDFNVLEKVVEELRKAKRIFLFGVGSSGLTAEDAKHKLMR
                     IGLQTDAVTNNHFMYMQAALVKEGDLVIGISHSGYSEEIVKSLRFSRANKATTVAITH
                     NLRSPVTEEANYVLINGNRQGHMQGDSIGTKMSQLFVLDLIYTLLVKAEPENALKQKQ
                     KTLNVILEQRVKG"
     gene            complement(3110..>3503)
                     /locus_tag="PXE92_002522"
     CDS             complement(3110..>3503)
                     /locus_tag="PXE92_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL5761708.1"
                     /translation="KLKSLDLVNLELGWQELENGIRMNVMSFETTPAEGKKAELHRKF
                     IDIQLLIDGEEMIEYGLSQPDLSKYDEYRDEDDYQLTAEIDDKNNLILKPNMFAIFLP
                     YEPHKPGNSVNGNKTLKKLVVKVPVELI"
BASE COUNT         1118 a          677 c          636 g         1072 t
ORIGIN      
        1 cagattttca acgtgtgatc aatgcagctg gctactctat gaaggggtta aaagccgctt
       61 atattaatga agccgccttt cgccaagaaa tttggtgcgc tactatttta ttccctctag
      121 ggcttattct aggcgaaacc aatattgaaa aagcattatt agtaggcaca gttttacttg
      181 ttttagttac agaactactc aatagtgcgg ttgaatctgt tgttgaccgc attggggctg
      241 atttccacga gctttctggt agagctaaag atattggctc tgcagctgta tttatggcga
      301 tggttttact cgctataact tggatattaa ttttgttttg ttaactctat ttttcaacca
      361 acactcttac tgaggtattt atgcgcttaa aaaaaacatt actttcggta gcactactta
      421 gtgcaacatc agcaatggcc tacgagacag gtaaaacata tcgttttacg gttttacata
      481 ctaacgatat acacggtcac ttttggcaaa gtgataaagg cgaatacggt ctcgctgctc
      541 aaaaaacatt ggttgataat attcgcaaag aggtcgcaga aaaaggtggt tcggtattaa
      601 tgctgaatgc aggtgatgcg aatacaggcg tgccggagtc agatatgcaa aatgcacgtc
      661 ctgatattga aggaatgaat gcgattggtt acgatgcaat ggttctaggt aatcacgaat
      721 ttgattaccc actgcaaatt ctctctatgc aagaaaaatg ggctaaattc ccctttattt
      781 cggccaatgt cattaataaa aaaacggata aacccattgt aaaaccttac gtgatgttag
      841 aacgaggcgg actaaaaatt gctgttatcg gattaacaac cgaagatacc gcaaaattag
      901 gtaatccaga tgtaacggaa aatgcctttt tcaaaaaccc tattgaaaca gcaaaaaaca
      961 cattagctga aattaatcaa aaagaaaaac ccgacgtacg tatcgcttta acccatatgg
     1021 gttactattt tgacggtaaa catggtacta atgcaccagg tgatgtaaca atggcccgta
     1081 ccttagaaaa aggagcgttc gatttaatca ttggcggtca tacccacgat actgtttgta
     1141 ttgatgaaaa aggtcaattc aaagccaaat atacgccggg tgaggaatgt aaaccagact
     1201 tccaaaacgg tacttggatt gtgcaagccg gcgaatgggg caaatttgtt ggacgggctg
     1261 attttgagtt taaagatgga aaagctacct tggtaaaata tgaattaatt ccggtcaact
     1321 taaaaaaaac cattaaaaaa gaagacggta ctaaagaata ccgactttac cagcctgaaa
     1381 tcaaagccga tgaagcaacc tataccttat tgaaaaaata tcaagatgag ggcgataaaa
     1441 agcttaatat tgaagttggt cgtgtgaaag ggttattaga cggcaaacgt gagcatattc
     1501 gcttccaaca aaccaatctc ggtcgtttaa ttgcacaatc gcaaatggaa agggtaaaag
     1561 ccgatatcgg gattatgaac tccggcggta ttcgtacctc ccttgaagaa ggtgtaataa
     1621 cttataaaca tattctgact gttcaacctt tcggtaatat gattgcaacg gtggatttaa
     1681 aaggacaaga attgttagat accctcacca ctattgctct gaaagaagtt gatactggcg
     1741 cttatcctca atttgccggc atttcaatgg tagtcgaccg tacagcaaaa actatttctg
     1801 atgttaaaat cggtggcaaa ccttttgata aagagaaaac ttataaagtt tctctgcctg
     1861 actatgttgc ggctggtggc gatggctacc cattactgaa aaaacaccct agctatgtca
     1921 atacaggctt tattgatgcc gaaatgctga aaaaattctt cgaagaaaat aaaattattg
     1981 aggcagataa atacgatcca aaaaaccaga tcattttcaa atagagctat agaaaatgaa
     2041 actcactctg gcagtctctg ctcaaaagag ctgtggctgc ctgtagattg ttttcttact
     2101 ttcaagtgtt ataggaaatc gataaaaaat ccctaccaaa ttaattcatc accatatgat
     2161 gaaaattaaa aaacctctgg caatactttg ccaaaagtct ttgactttta tagggtaata
     2221 tcactgctta ttagccttta acacgttgtt ccaaaatcac attcagtgtt ttttgtttct
     2281 gtttcaacgc attttcgggt tcggctttaa ctagtaaggt ataaattaaa tcaagaacga
     2341 aaagttgtga cattttagta ccgatagaat ctccttgcat atgcccctgt cgattaccat
     2401 taattaacac ataattagcc tcttccgtga cgggggaacg taaattgtgt gtaatcgcaa
     2461 ccgttgtcgc tttatttgca cgagaaaaac gtagtgattt cacaatttct tcagaatagc
     2521 ctgaatgact aatccctata actaaatccc cctctttcac caatgccgcc tgcatataca
     2581 taaaatgatt atttgtgact gcatcggttt gtagcccaat acgcattaat ttatgttttg
     2641 catcttctgc ggttaaccca gaagaaccca ctccaaataa aaagatccgt tttgccttac
     2701 gtaattcttc aacaactttt tccaacacgt taaagtcaag caaattaata gtctcttcaa
     2761 taacgttatc taaactcact ttgagcttct cagcaatatc tttcgatgta tccgattctg
     2821 aaacatccgt atcaagcaat actctattat cttgattttg cgtagccaac tctattgcaa
     2881 gctctaattt aaagtcggta taacctttaa aacctaatgt acgacaaaaa cgaataaaag
     2941 ttgcttcacc aacatctaat tgtttggcca cttcagataa tgaacattgg ctaagtaatt
     3001 ccggctgaga taaaatagca gcagctattt tcttctctgt tttggttaaa ctattttgta
     3061 gcgagctaat tgtattaaga atttttcccc gactagacat agtagcctcc taaatcaatt
     3121 caacaggtac tttcaccacc agttttttca atgttttgtt gccattcacc gaatttccag
     3181 gcttatgtgg ttcataaggg aggaaaatag cgaacatatt tggcttgagg atcaagttat
     3241 ttttatcatc aatctcagct gttaattggt agtcatcttc atctcgatat tcatcatact
     3301 tagataaatc tggctggctt aacccgtatt caatcatttc ttcgccgtct atcaataatt
     3361 gaatatcgat aaattttcgg tgtaactctg cttttttccc ctcagctggc gtagtttcaa
     3421 atgacattac attcatgcga ataccatttt ctaattcttg ccagcctaat tccaaattaa
     3481 ctaaatctaa actttttaat ttt
//
LOCUS       DANMBQ010000187         3438 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.190, whole genome shotgun sequence.
ACCESSION   DANMBQ010000187 DANMBQ010000000
VERSION     DANMBQ010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3438
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.190"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..351)
                     /locus_tag="PXE92_002523"
     CDS             complement(<1..351)
                     /locus_tag="PXE92_002523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5761709.1"
                     /translation="MIITMKDIAKEANVSLGTVSNVLNGKSNVSLAKIEKVQAAVEKL
                     GYRKNIQASTLKSGTSNKIAIILPNITELKYACLYENLDLICTQNDLSLILYLTHNRE
                     DREKQIIQNIKQDNY"
     gene            complement(513..1853)
                     /gene="gdhA"
                     /locus_tag="PXE92_002524"
     CDS             complement(513..1853)
                     /gene="gdhA"
                     /locus_tag="PXE92_002524"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HDL5761710.1"
                     /translation="MSDLNALFQKIKQRDPNQAPFHQAVEEVFGSLAPFLAKNPKYTQ
                     QGLLGRIVEPERVISFRVTWVDDKGQVQVNRGYRVQMNSAIGPYKGGIRFHPTVDLGV
                     LKFLAFEQVFKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMSELYRHIGADTD
                     VPAGDIGVGGREIGYMFGQYKKLRNEFTSVLTGKSLTWGGSLIRPEATGYGAVYFAES
                     MLATKGQQIEGKSVVISGSGNVAQYAAEKVIQKGGKVLTVSDSNGYVLFPESGMTEAQ
                     LQALLELKNERRERLSVYATEQGLKYFDGQKPWGVKCDIALPCATQNELDTEDAKELV
                     KNGCICVAEGANMPTTLGGVEVFIGAKILYAPGKAANAGGVATSGLEMSQNAIRLSWS
                     REEVDQRLFNIMKAIHENCVENGTEADGFVNYVNGANIAGFKKVANAMLEQGIV"
     gene            complement(2046..2387)
                     /gene="bamE"
                     /locus_tag="PXE92_002525"
     CDS             complement(2046..2387)
                     /gene="bamE"
                     /locus_tag="PXE92_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HDL5761711.1"
                     /translation="MKMKSLLAAMLLALGVTACSTVEKVVYRIDVPQGNYLEQDKIAQ
                     LKVGMTAEQVEYLLGTPMLKNIFETHRWDYVFIKREGYKDPEQRNLFIYFDAKGLVSK
                     IDDSNANAEQK"
     gene            complement(2454..>3438)
                     /gene="yejK"
                     /locus_tag="PXE92_002526"
     CDS             complement(2454..>3438)
                     /gene="yejK"
                     /locus_tag="PXE92_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HDL5761712.1"
                     /translation="EIVLHQLQKTEGENPELNTFLRENLLAISPEVDQMMLQLHQAYQ
                     SKAKAYGIFKPESVFAQQLNRLLEQETDFLPFSHSCAKMLAAELIKYPFADGGTFILC
                     RYTFLATEYLFIALIDSRNSMLVDEQLEIKRTQYLEIAQYDIACRINLTELKLDATSN
                     RYLTFVKGRVGRKIADFFMDFLSAEEGFNPQLQNQTLLQAVSDYCEQGELSAPQTREV
                     KKQVFEYCKGQINSGEEIALNELSNALPTLNEIDFAQFTQEQEYGLEENIPPMRNALK
                     TLTKFSGSGKGVTISFNAELLGERLLWDELNDTLTIKGLPANLRDQLERNK"
BASE COUNT         1010 a          738 c          579 g         1111 t
ORIGIN      
        1 atagttatct tgctttatat tttgaataat ttgtttttct ctatcttctc gattatgcgt
       61 taaataaaga atgagagata aatcattttg cgtacaaatt aaatcaagat tttcatataa
      121 acaggcatat ttcagctctg taatattggg caatataata gcaattttat tacttgtgcc
      181 actttttaac gtagaggctt gaatattttt acgataaccc aacttttcaa cggcagcttg
      241 tactttttct attttagcta agctaacatt actttttccg tttaatacat tcgatactgt
      301 tcctaacgaa acatttgctt cctttgcgat atctttcatc gtaatgatca tatactgccc
      361 tttcacatac tgctaaaact gagattggca tagattttac cataattggc aaatgaaata
      421 cgatttcaat ttagcttgtc tctagctaca acctaaaata aaaaaactgc ctcgatatat
      481 cgaggcagtt cttgaataat agggataata aattaaacaa taccctgttc taacatcgca
      541 tttgccactt ttttgaaacc agcaatattc gcaccgttta catagtttac gaaaccatct
      601 gcttcagtac cattttctac gcagttttcg tgaattgctt tcataatgtt gaataaacgc
      661 tgatctactt cttcacgact ccaagataga cgaattgcat tttggctcat ttctaaacct
      721 gaggttgcca caccacctgc gttagccgct ttacccggag cataaaggat tttcgcaccg
      781 ataaagactt caacaccacc taatgtggtt ggcatatttg caccttctgc cacacaaata
      841 cagccgtttt tcactaattc tttagcatct tcggtatcta attcgttttg ggttgcacaa
      901 ggtaaagcga tgtcacattt cacaccccac ggtttttgac cgtcaaagta ttttaagcct
      961 tgttctgttg catacacaga taagcgttca cggcgttcgt ttttcaactc taataatgct
     1021 tgtaattgtg cctctgtcat accggattca gggaataaga cataaccgtt agaatctgaa
     1081 accgttaata ctttaccgcc tttttgaatc actttttcag ctgcatattg tgccacgtta
     1141 cccgaaccgg aaattaccac tgattttcct tcgatctgct gacctttagt cgctaacata
     1201 gactctgcaa aatacaccgc accataacca gttgcttccg gacgaattaa gctaccaccc
     1261 caagtcagcg atttaccggt taatactgaa gtaaattcat tgcgtaattt tttgtattga
     1321 ccgaacatat agccgatttc acgacctccc acgccgatat cgcctgcagg aacgtcagta
     1381 tcagcaccaa tgtggcgata taattcgctc ataaacgctt ggcagaaacg cattacttcg
     1441 gcatcagatt tgcctttcgg gtcaaagtct gaaccacctt taccaccgcc cattggcaat
     1501 gtcgttaacg catttttgaa tacttgctca aaggctaaga attttaatac gcctaaatca
     1561 acggttgggt ggaaacgaat accgcctttg tatggaccga ttgctgagtt catttgtaca
     1621 cggtaaccac ggtttacttg cacttgacct ttatcatcaa cccaagtgac acggaagcta
     1681 attacacgct caggctcaac aatacgccct aataaacctt gctgggtata tttcggattt
     1741 ttagctaaga aaggggcaag gctaccgaac acttcttcaa ccgcttgatg gaaaggggct
     1801 tggttcggat cacgttgttt gattttttgg aaaagggcgt ttaaatcgct catattatac
     1861 tcctgaataa attgatgatg ttgtgtattt aagatgagcg aagtctagca agcaatttta
     1921 gctttgaaaa gatagattag aaaaatttat cattaaaata agaaaaatta agtttaaatg
     1981 cttatttttt attcaaaaaa ataagcccac ttttaaaagt gggcttttcg aaccaacaaa
     2041 tcgtcctatt tttgttctgc attcgcattg ctgtcatcaa tttttgatac taacccttta
     2101 gcatcaaaat aaataaacag attgcgttgt tcaggatctt tataaccttc acgtttaata
     2161 aacacataat cccaacggtg ggtttcaaaa atgttcttta acattggtgt accaagcaaa
     2221 tattcaactt gttccgctgt cataccgact ttaagttgag caattttatc ttgttctaag
     2281 taattgcctt gcggtacatc aatacggtac accactttct caacggttga acaagccgtt
     2341 acacccagtg caagcaacat tgcagctaaa agagatttca ttttcataat tgaccttttg
     2401 ataatccaaa attcagataa cgagataata cctaaactga taaaaatttt ccattatttg
     2461 ttacgttcca gctggtcacg cagatttgcc ggtaatcctt tgattgtcag tgtgtcgttt
     2521 agttcatccc aaagtaaacg ctctcctaat aattctgcgt taaagctaat cgttactcct
     2581 ttgcccgaac cggaaaattt cgtcagggtt ttaagggcat ttcgcatagg cggaatattc
     2641 tcttccaagc cgtattcttg ctcttgcgta aattgggcaa aatcgatttc attcagtgtt
     2701 ggcaatgcgt tggaaagctc atttaacgca atttcctctc cactatttat ctgcccttta
     2761 caatattcaa acacctgctt tttcacttct cgagtttgag gggcagataa ctccccttgc
     2821 tcacaataat cgctcaccgc ttgcaacaag gtttgatttt gcaattgtgg attaaaccct
     2881 tcttccgcac ttaaaaaatc cataaagaaa tcggcaattt tacgccctac tctgcctttc
     2941 acaaaagtta aatagcgatt tgacgttgcg tcaagtttca gttcagttaa attaatgcgg
     3001 caggcaatat catattgtgc aatttcgaga tattgcgtgc gtttaatctc taactgctca
     3061 tcaaccagca ttgaattacg gctatcaatc aacgcaataa acaaatattc ggtagctaaa
     3121 aaagtgtaac gacacaaaat aaaagtgcca ccatcggcaa acggatattt aatcagctct
     3181 gctgcaagca ttttggcaca gctatggcta aaaggtaaaa aatcggtttc ttgctccaac
     3241 aagcggttga gctgttgagc gaaaaccgac tccggtttaa atataccgta agcctttgct
     3301 ttactttgat aggcttgatg taattgcaac atcatttgat cgacttcagg ggaaattgcc
     3361 aataaatttt ctcgcaaaaa cgtattaagc tccgggttct cgccctctgt tttttgtaat
     3421 tgatgtaaca cgatttca
//
LOCUS       DANMBQ010000188         3390 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.191, whole genome shotgun sequence.
ACCESSION   DANMBQ010000188 DANMBQ010000000
VERSION     DANMBQ010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3390
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.191"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..219
                     /locus_tag="PXE92_002527"
     CDS             <1..219
                     /locus_tag="PXE92_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761713.1"
                     /translation="ISRIRKRFKCPEQAKSFVEQWKQIDSPAFMQHQINRQALREELS
                     NLEQRKQKQDGILEVIEYRISQIKELLK"
     gene            216..695
                     /locus_tag="PXE92_002528"
     CDS             216..695
                     /locus_tag="PXE92_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761714.1"
                     /translation="MKRNKVESYTIRLLKNNHTKRYFGEVILNGIKEISTAEMMSEIN
                     AIKALNKRIEALNKTKAVNLPNYPEIRGHQPIMYNYNFEQIEEDPEQVKPKPSKPKRK
                     PFTPYGLNGYFVDSNGNIRLHLDRRASAETITLETDFFNALAEMVKRTQEANNPKHA"
     gene            829..1041
                     /locus_tag="PXE92_002529"
     CDS             829..1041
                     /locus_tag="PXE92_002529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761715.1"
                     /translation="MIGYEDYTDASLQPEEDPSEEAFLLVEEKIIDVLENNGFETVAT
                     ILAGSDGWCNAINAYLAEQNKHRNEF"
     gene            1054..1977
                     /locus_tag="PXE92_002530"
     CDS             1054..1977
                     /locus_tag="PXE92_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecT"
                     /protein_id="HDL5761716.1"
                     /translation="MTNQNQQVAQKQDKFPIKTLFESPNVKQKLQELLNKNAATFTTS
                     VLQIVNSNSMLRNAEPMSVFNAACMAATLNLALQNGLGFAYIVPYQNRKEKKTEAQFQ
                     LGYKGLIQLAQRSGQFKRLVAVPVYEKQLLAEDPINGYEFDWKQKPAKDEKPIGYYAY
                     FKLINEFTAEIYMTTQEVHDHANRYSQTYRKGYGVWHDNFEAMALKTVMKLLLSKQAP
                     LSVEMQQAVLADQAVVKDVENAEFAYPDNEIQEAEFTELKVSDEVFEKCKQTIINKES
                     TLQDMCDNGYEFNKEQYAELEKLENEQQSNV"
     gene            1970..2632
                     /locus_tag="PXE92_002531"
     CDS             1970..2632
                     /locus_tag="PXE92_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation protein TolB precursor"
                     /protein_id="HDL5761717.1"
                     /translation="MYKFKPRCSMLHQLMSEPRTKADREAGLISDTAKAAVREVAKFD
                     LFGYQSFDGNKYTEKGNQLEEQAIKLSGFTRGLVLKKNTERRENDWISGECDIYVPSR
                     KLIIDTKCSWDIGTHPFFADEAIAKAEKAGYDIQMQGYMWLWDCEEAQIDFVLFPTPI
                     DLIGTYESTEKLIDLVEQIPQQKRITTVTVKRDEAIIAKIKDRVKAASKYYDKLIQEA
                     MN"
     gene            2673..3374
                     /locus_tag="PXE92_002532"
     CDS             2673..3374
                     /locus_tag="PXE92_002532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HDL5761718.1"
                     /translation="MTTQKKYELLQNDTINHNGRTLYRIKAITTFGTVFAGTLGGYIE
                     KESNLKHLGNAWVYDNAKVYDSAEVYGNAKVYDSAEVYGNAEVWGSAEVYGNAKVWGN
                     AEVWGSAEVYGNAEVWGSAKVWGNAEVWGSAEVYGNAKVYDSAEVWGSAKVRSFAVLS
                     ERKMIFWASNVGTENGTLTVYNGKDGLLVTRGCFTGTVEEFLAKSDEVHDEKTKREYQ
                     LLIEVAKSRILGEAT"
BASE COUNT         1182 a          740 c          740 g          728 t
ORIGIN      
        1 atttcaagaa tacgcaaacg cttcaagtgc cctgaacagg caaaatcctt tgtagaacaa
       61 tggaaacaaa ttgattcccc tgcatttatg caacaccaaa tcaaccgcca agcattaaga
      121 gaagaattat caaaccttga gcaacgcaaa cagaagcaag acggaatact tgaggtgatt
      181 gagtatcgta ttagccaaat caaggagtta ctgaaatgaa acgcaataaa gtagaaagct
      241 atactatccg cttattaaaa aataatcata caaaacgcta cttcggagaa gttatattaa
      301 acggcataaa agaaatcagc acggcagaga tgatgtctga aattaacgct attaaggcat
      361 taaataagcg tattgaagct ctgaataaaa ccaaagccgt taatttgcct aattatcctg
      421 aaatcagagg tcatcagcct attatgtaca attacaattt tgaacaaatt gaggaagatc
      481 ctgaacaggt taagcctaaa ccatcaaaac caaaacgcaa acctttcaca ccctacgggc
      541 taaacggcta ctttgtggat agcaacggca atattcgcct gcacctagac agacgagcaa
      601 gtgccgaaac aattaccctt gaaactgatt tcttcaacgc tcttgccgaa atggtaaaac
      661 gtacacaaga ggcaaacaat cctaaacatg cttagacaat ggattacata cggcttatac
      721 gccctgcttt ttatggttgc catcaccctc ctaatgcaat gaagagctta tccctgaaag
      781 cacctgcaag cctgaaactt gcgaatttaa agtaacggag aaagtgtgat gataggatac
      841 gaagactaca cagatgcttc acttcaacca gaagaagacc ctagcgaaga ggctttcctc
      901 ttagtggagg agaaaattat agatgtgcta gaaaacaacg gctttgaaac cgttgctact
      961 atcctagccg gttctgatgg ctggtgtaac gcaattaatg cctacctggc cgaacagaac
     1021 aaacacagaa atgaatttta gaggaataag ataatgacaa accaaaatca acaagtagca
     1081 caaaagcaag ataaattccc gattaaaacc ctatttgaaa gcccgaatgt aaagcaaaaa
     1141 ctacaagagc ttttaaacaa aaacgcagcc acgtttacaa caagcgtgtt gcagattgtg
     1201 aatagtaact caatgttacg caatgccgaa ccgatgagcg tattcaacgc cgcttgtatg
     1261 gcagcaacgc ttaatttggc attacaaaac ggcttaggtt ttgcctacat tgtgccgtac
     1321 caaaaccgca aagagaaaaa aaccgaagct caattccaac ttggctacaa aggtttaatt
     1381 caactggctc aacgtagcgg gcaatttaaa cgccttgttg ccgtgccggt gtatgaaaaa
     1441 caactgcttg ccgaagaccc catcaacggt tacgagttcg attggaaaca aaaaccggct
     1501 aaagatgaaa aaccgattgg ctattacgct tatttcaaac tgataaatga atttaccgcc
     1561 gaaatctata tgaccacgca agaagtccac gaccacgcca accgctacag ccaaacctac
     1621 cgcaaaggct acggcgtatg gcacgacaac tttgaggcaa tggctctcaa aactgtgatg
     1681 aagctcttgc tttccaaaca agctccatta tcagtggaaa tgcaacaagc ggtcttggca
     1741 gatcaagcgg tcgtaaaaga tgttgaaaat gcagaatttg cctaccctga caacgaaatc
     1801 caagaggcgg aatttaccga actcaaggtc agcgatgagg tgtttgagaa atgcaaacaa
     1861 accatcatca acaaagaaag caccttgcaa gatatgtgcg ataacggcta cgagttcaac
     1921 aaagagcaat atgcggagtt ggagaagtta gaaaatgaac agcaatcaaa tgtataaatt
     1981 caaaccccgt tgctcaatgc tccaccaact aatgagcgaa cctcgcacca aagccgaccg
     2041 tgaagccgga ctgatttccg acaccgcaaa agcagcggtg cgtgaagtgg ctaaatttga
     2101 cctattcggt tatcaatcct ttgacggcaa caaatacact gaaaaaggca atcagctaga
     2161 agaacaagcc attaagttaa gcggttttac tcgtggcctg gttctaaaaa agaacaccga
     2221 acgccgagaa aacgattgga tttcaggcga gtgtgatatt tatgtaccaa gccgaaagct
     2281 gattatcgat acaaaatgca gttgggacat cggcacgcac ccgttttttg cagacgaagc
     2341 catcgccaaa gccgaaaaag ccggatatga cattcaaatg caaggctata tgtggctgtg
     2401 ggattgcgaa gaggctcaaa tcgattttgt gttattccct actccaatcg accttatcgg
     2461 tacttacgaa agcacagaaa agctgattga ccttgtggaa caaatccccc aacaaaaacg
     2521 cattaccacc gtgacggtta agcgtgatga agccatcatt gccaaaatca aagacagagt
     2581 gaaagcagcc agtaagtatt acgacaagct tatacaagaa gctatgaatt aattcaatcg
     2641 ccccgaaagg ggctttttaa taggtgacaa atatgacaac ccaaaagaaa tacgaactcc
     2701 tccaaaacga cacaatcaac cacaacggca gaacactcta ccgcatcaaa gccataacca
     2761 catttggaac agtctttgca ggtacacttg gcggctatat tgaaaaagag agcaacctaa
     2821 aacatttagg aaatgcttgg gtgtatgaca acgccaaagt gtatgacagc gccgaagtgt
     2881 atggcaacgc caaagtgtat gacagcgccg aagtgtatgg caacgccgaa gtgtggggca
     2941 gcgccgaagt gtatggcaac gccaaagtgt ggggcaacgc cgaagtgtgg ggcagcgccg
     3001 aagtgtatgg caacgccgaa gtgtggggca gcgccaaagt gtggggcaac gccgaagtgt
     3061 ggggcagcgc cgaagtgtat ggcaacgcca aagtgtatga cagcgccgaa gtgtggggca
     3121 gcgccaaagt aagatcattt gcagttcttt ctgaaagaaa aatgattttc tgggcgagca
     3181 atgtcggcac agagaacggt acattaaccg tttacaacgg aaaagacgga ctgcttgtaa
     3241 caagaggctg tttcaccggc acagtcgaag agtttttagc aaaatccgac gaagttcacg
     3301 atgagaaaac gaagcgggaa tatcagctac tgattgaggt agcaaaaagc agaattttag
     3361 gagaagcgac ttaatcagtc tcttttttat
//
LOCUS       DANMBQ010000189         3371 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.192, whole genome shotgun sequence.
ACCESSION   DANMBQ010000189 DANMBQ010000000
VERSION     DANMBQ010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3371
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.192"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..2439
                     /locus_tag="PXE92_002533"
     CDS             <1..2439
                     /locus_tag="PXE92_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail length tape measure family protein"
                     /protein_id="HDL5761719.1"
                     /translation="VGGVVITADLEFENLLRDTQKVDKAMDDIGKSTLKAEKGLKGLE
                     TQATKTAIAVNQATNKMKNIRGVAGQLGYQIQDISIMLQMGSNASTVIAQQGSQILSI
                     FGPMGAVAGAILAISGAIGGALLPSLFDSTDATELLAAAQKNLSEVVTQTESGVSALS
                     AKIIKLAKVSEDAAKAKIAVAMSDAKIAIKAAGDSSQKAFEQFDGFFGSFTNSSQSIR
                     NAIDELKRYESKGKDVGAVIKELGGTYGGAIAEVNALDSVTSEMSKTLGITQSEALGL
                     IKLLAQLEQDKSPDNIKLLAIALSDLSDKNGWANEELNKLTRTINDNSVSALDAETSV
                     RLLESAIKDLQNAIQNSQGALDGNVAKMNQLADAAERKAATIGKTERETAKYAATLLA
                     TTDEAKKNLDSTLSRIDASYDQIEAYQAEQKALQDKKTADAKAAREAEAAAKKSAQAK
                     KQVVEQLRQMATQYEIAVLRQKGMHLEAVKLEAGMRLGAAATKEQREEAEKLAQSIYG
                     ATAASQNFNAIQAQASPVTALDQRHQQQLAQIEEYKILYPQKIMEAEAARAAIEEQYR
                     QQRMEAQWEEWKQASDGARMFGDAVDAVGSSATSTITGLLNGTMSVRDAFASIANTIL
                     NSVVQSLVEMGMAQVKQMIMGQTAAKASMAAQMVQAKALAASFAPAASMVSLATQGAN
                     AIPAQAAITSTMSMAQVAAVTGRKLGGPVSARQMYRVGENNQPEIFKASNGMQYMIPG
                     QSGRVFSNKQSQGQGGGESKTVAVIVNQTNHFSSDEASANQAAVAKALSNQIKASVRL
                     ELQSQMRAGGVLAR"
     gene            2443..2772
                     /locus_tag="PXE92_002534"
     CDS             2443..2772
                     /locus_tag="PXE92_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761720.1"
                     /translation="MQTFNFKVEQDYTVQNEPSVVILKFADGYEQTAPKGLNHNLKKY
                     QGITVKANKAEAVKIQQFLNAHGGYKKFNWRDRTSDETVTVRCRSWSSTKLGAVIEFT
                     LNFDEVI"
     gene            2772..3242
                     /locus_tag="PXE92_002535"
     CDS             2772..3242
                     /locus_tag="PXE92_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5761721.1"
                     /translation="MPKAPPKKMASELIKLEQDALIELWEIDLTHIYSSSNPNQRGEI
                     FRFHNGVSQTQQNIWWQGNEYQAYPIAADGFEISGQGPSNRPTLTVSNLYGVVTVLVE
                     DFGQPVEAKVSSEETVDGNIQMTVELLKKMDQIADQRYRRNQLNDLRTGGTLSK"
     gene            3250..>3371
                     /locus_tag="PXE92_002536"
     CDS             3250..>3371
                     /locus_tag="PXE92_002536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5761722.1"
                     /translation="MPISISNQMKLDLAKLEQNAMLDLYEVDLRKLQDKNGNAG"
BASE COUNT         1145 a          669 c          797 g          760 t
ORIGIN      
        1 gttggcggag ttgtaattac cgcagatcta gaatttgaaa atctgctaag agatactcaa
       61 aaagttgata aagcgatgga tgacatcgga aaatcaacat taaaagcaga aaaagggctg
      121 aaagggctag aaacgcaggc aaccaaaacg gcgatagcag taaatcaagc cacaaacaaa
      181 atgaaaaata tccgtggagt agcaggtcaa cttggttatc aaattcaaga catctcaata
      241 atgcttcaaa tgggttctaa cgcttcaacc gttattgctc agcaagggtc gcaaatctta
      301 agtattttcg gtccaatggg agctgttgca ggggcgatct tagctattag tggtgctatt
      361 ggtggggcgt tactccctag tttgtttgat tcaactgatg caactgagct tttggcagca
      421 gctcaaaaaa atctcagcga agtagttact caaacggaaa gtggtgtttc cgccctttct
      481 gcgaaaatca ttaaattagc aaaagtaagc gaagatgcag caaaagcaaa aattgcagta
      541 gctatgagtg atgcaaaaat agctattaag gcagcagggg attcatcaca aaaggcattt
      601 gagcaatttg acggcttttt tggatcgttt acaaattcaa gtcaaagtat tcggaacgca
      661 attgacgaat taaaacgcta tgaatcaaaa ggtaaagatg ttggtgccgt aataaaagaa
      721 cttggaggca catatggtgg tgcaattgcc gaagttaatg cgctggattc tgtgacaagc
      781 gaaatgtcta aaacgcttgg tattactcaa tctgaggctc ttggtttgat aaaactgttg
      841 gctcaattag agcaagacaa aagccctgat aatattaaat tactcgcgat agctttatct
      901 gacttaagcg ataaaaatgg gtgggcgaac gaagagctaa ataagctaac cagaacgata
      961 aacgataatt cagtatctgc tttagatgcc gaaacatcag taagactctt agagtctgct
     1021 ataaaagact tgcaaaatgc aatccaaaac tcccaaggtg cattggatgg caatgtagca
     1081 aaaatgaatc aacttgcaga tgcggcagaa agaaaagctg caacgatagg caagactgag
     1141 cgtgaaactg ctaaatatgc agctacgcta ttagctacaa ccgatgaagc taaaaaaaat
     1201 cttgattcca cattaagtag gattgacgca tcatacgatc aaatcgaagc ctatcaagcc
     1261 gaacaaaaag ccttacaaga taaaaagacc gcagatgcaa aagctgccag agaagctgaa
     1321 gcggctgcaa aaaaatccgc tcaagccaag aagcaagttg tcgaacagtt gcgacaaatg
     1381 gctacacagt acgagattgc tgttttgagg caaaagggaa tgcatctcga agccgtaaaa
     1441 ttagaagctg gtatgcgttt aggagctgcg gcaacaaaag agcaacgaga agaagctgaa
     1501 aaactagcac aaagtattta tggagcaacc gcagcaagtc agaactttaa cgctatacaa
     1561 gcccaagcat ctcctgttac tgcattagac caacgacatc aacaacagct agctcagatc
     1621 gaagaatata aaatcttgta tccacaaaaa ataatggaag cagaagctgc gagagctgca
     1681 atcgaagaac aataccgcca gcaacgaatg gaagctcaat gggaggagtg gaagcaagcg
     1741 agcgacgggg cgagaatgtt tggtgatgcg gttgatgctg ttggttcaag tgcaacaagc
     1801 acaattacgg ggctactaaa tggcacaatg tccgtgcgtg atgctttcgc atcaattgca
     1861 aatacgatct taaatagtgt agtacaaagc cttgtcgaaa tgggtatggc tcaagttaag
     1921 caaatgatta tggggcaaac tgctgccaag gcttctatgg cggcgcaaat ggtgcaagct
     1981 aaagcgttag ctgcttcatt tgcacccgcg gcctctatgg tttctcttgc cacacagggg
     2041 gcgaatgcta ttcccgctca agctgcgatc acgtcaacta tgagtatggc tcaagtcgcc
     2101 gcggtgacag gtcgtaaact tggcggccct gtatcagcta gacagatgta tcgtgtcggc
     2161 gagaacaatc agcccgaaat cttcaaagcg agcaatggga tgcaatatat gatccccggt
     2221 caaagcggtc gtgtattcag caacaagcag tcgcaaggtc aaggtggagg cgaaagcaaa
     2281 acagtagctg tcatcgtaaa tcaaaccaat cactttagca gcgatgaagc cagtgcaaat
     2341 caagcggctg ttgcaaaagc attgagcaat caaatcaagg cttccgtgag attggaattg
     2401 cagtcacaaa tgcgagctgg tggagttcta gcgaggtaat caatgcaaac atttaatttc
     2461 aaggttgagc aagactacac tgttcaaaat gagcccagtg tcgtcatact aaaatttgcc
     2521 gatggttacg agcaaaccgc tcccaaaggg ttaaaccaca atctgaaaaa ataccaaggc
     2581 attaccgtaa aagcgaacaa agcagaagcg gtgaagattc agcaatttct caatgctcac
     2641 ggtgggtata agaaattcaa ctggcgcgat agaacaagcg atgagacggt aacggttcgt
     2701 tgcagaagct ggagctccac taaattaggt gcagtcattg agtttacact taatttcgat
     2761 gaggtgattt aatgccaaaa gcccccccca aaaaaatggc atcagagttg ataaaactcg
     2821 aacaagatgc cctgattgag ctgtgggaga tagatctcac tcacatctac tctagctcaa
     2881 acccaaatca gcgcggagag atattccgct ttcacaatgg cgtgagccaa acacaacaga
     2941 acatctggtg gcaaggcaat gaataccaag catacccgat tgccgccgat ggttttgaga
     3001 tttcgggtca aggaccgtca aatcgtccaa cactcactgt ctctaacctg tacggtgttg
     3061 tcacggtatt agtagaagat ttcgggcaac ccgtagaggc gaaagtcagc agtgaagaga
     3121 ctgtagatgg caatatccaa atgacggtgg aactgctgaa aaaaatggat caaatcgccg
     3181 atcaacgcta ccgtagaaat cagttaaatg atttaagaac aggtggaaca ttatctaaat
     3241 aggtgaagta tgccaattag tatttctaac caaatgaaac tagatcttgc caaacttgag
     3301 caaaatgcaa tgctggactt gtacgaggtt gatttgcgta aattgcaaga caaaaacggc
     3361 aatgctggta g
//
LOCUS       DANMBQ010000190         3358 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.193, whole genome shotgun sequence.
ACCESSION   DANMBQ010000190 DANMBQ010000000
VERSION     DANMBQ010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3358
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.193"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..442
                     /locus_tag="PXE92_002537"
     CDS             <1..442
                     /locus_tag="PXE92_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL5761723.1"
                     /translation="VTLSEFNLKNYLDDEVSYTYFTDDNVLNYRNSIYGLVATLNYCN
                     TEAVTRRLYYKLSSLNKIMDFSITQEDWYRSVTETQRNCVLIKNSAIEDYSINLTANK
                     IQAKNSPIFIADPFNVLYIDDKKLLKGRDSLLKLVYKTSPYLGV"
     gene            444..1511
                     /locus_tag="PXE92_002538"
     CDS             444..1511
                     /locus_tag="PXE92_002538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761724.1"
                     /translation="MKFILFDSILERHLGESLKRALESLGHQAVFTDLILHGHSMIYK
                     QADIDFMWKKVKDICDEKADMFISFRPMNLTTEMLEYIGKRMKTAIWLSDDPVLYKTC
                     YSQVVNHYDVLLHCGYKEVMDFYEANNHPKGFNFPFWTDHVAFPSVYNPLHSDYEIAF
                     LGNMNGQVRRKRYMELASLPFTKKVFGLIDSDPLAMHGGFINEAYLHTKRVTEVLSKA
                     KVGVSIPQFFTEYNGLDYDYPELAGLGYFQFPSRVIQYAASGLPIAAVGDERMKEVYP
                     EIFVGNSITELEPYIKQICEDYDFALSESAKILTRFRKNYSALSRAMMLIDLVENLDK
                     LQSQTTQERAILFTKYKAQYN"
     gene            1523..2329
                     /locus_tag="PXE92_002539"
     CDS             1523..2329
                     /locus_tag="PXE92_002539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761725.1"
                     /translation="MNIKDLLKEISFKAVINDLNFSSCLYIKPNTSKLYVILNGALIK
                     EPRNPLIYHRHSWHLEFDGSVLYIADPTLFKYESINLAWYVGDKDTDLYPYLAEFVTS
                     VATHLNVETDHIVTYGSSGGGFAALQLGARIGNGVVTVCINPQTNIMKYVPSHRNAFL
                     NACFDFNAEEYDSLSNQEKFNALVLLKENTSKILYIQNTQDEFHHKWHFLPFLELKGI
                     DLSEIEKTHWREQQSKDVKVILYSHESGHAAEPKEMIPEILSAVDQLIAS"
     gene            2331..3326
                     /locus_tag="PXE92_002540"
     CDS             2331..3326
                     /locus_tag="PXE92_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5761726.1"
                     /translation="MLFYLVSDSLTRLSLSNESLVDLGRITSIGNYPFLHNAKNAKFL
                     MVESAWQGYKNRWKYKIASYPDNPERTNEKLVRLVEKAKDKGIPTVFWNKEDSVHFDR
                     FIDSAKHFDHIFTVDQNAIARYREVVPATTTVNVGMFPVQPKIHNFQGFNFKHLAANF
                     VGSYSHHIHNKRRERQDMLFGAALKAGLPVTIFDRNSDRKSENYRYPKNSFNLNVQPN
                     VSYTETANIYRDYLVSLNINTVEDSPTMFSRRVVEILACGGILVSTPSMAIDNIFKEY
                     CHIVQSEDEAIELFQRLKRGASRDDLNKAIAGSEFVLSNFTWEHFLSQIQKVVYR"
BASE COUNT         1130 a          510 c          607 g         1111 t
ORIGIN      
        1 agttactctt tctgagttta atctgaaaaa ctatttagat gatgaagttt cttacactta
       61 tttcaccgat gataatgtcc taaattatcg taattctatt tatggattgg tagcaacact
      121 taattattgt aatacagaag cagtaaccag aagattgtac tataaattat catcattgaa
      181 taaaataatg gacttttcaa ttactcagga agactggtac agaagtgtta cagaaactca
      241 acgtaattgt gttttaatta aaaatagtgc tattgaagat tattcaatca atcttacggc
      301 caataaaatt caggctaaaa attcacctat ctttatagct gatccattta atgtgctata
      361 tatagatgat aaaaagttat tgaaaggtag agattcctta cttaaattgg tttataagac
      421 ttctccatat ttaggggttt aatatgaagt ttattttatt tgattctatt ttagaacgtc
      481 atttgggcga aagtttaaaa agagctttgg agtcgttagg gcatcaagca gtatttacag
      541 atttaatttt gcacggccat tctatgattt ataaacaagc ggacatagat ttcatgtgga
      601 aaaaagtaaa agatatttgt gatgaaaaag cagatatgtt tatctcattt cggccgatga
      661 atctaacgac agaaatgctt gagtatatag gcaagcgaat gaagaccgct atttggcttt
      721 cagatgaccc tgttttatat aaaacttgct attctcaagt agtaaatcat tatgatgtat
      781 tattacattg cggatataaa gaagttatgg atttttatga agctaataac catccaaaag
      841 gctttaattt tccgttttgg acagatcatg tagcatttcc aagtgtatat aacccgcttc
      901 attctgatta tgagattgca tttttaggta atatgaatgg gcaagttaga cgcaaaagat
      961 acatggaatt ggcttcatta ccatttacca aaaaagtatt cggtttaata gattcagatc
     1021 cattagcaat gcatggtgga tttatcaatg aagcatattt acatacaaaa cgtgtaacag
     1081 aggttttatc taaggcaaaa gttggggtga gtatcccaca attctttacc gaatataatg
     1141 gtttagatta tgattatcct gaattggcgg gtttaggata tttccaattt cctagtcgag
     1201 ttatccaata tgctgcaagt gggttaccta ttgcagcggt tggtgatgag agaatgaagg
     1261 aagtttatcc tgaaatcttt gttggcaata gtattacaga gctggagccg tacattaaac
     1321 aaatttgtga agattatgat tttgcactat cagaatcggc taaaattcta actagattta
     1381 gaaagaacta ttctgcctta tcccgtgcca tgatgttgat tgatttggta gaaaatttag
     1441 acaaactaca gagccagaca acacaagagc gcgcaatttt atttactaaa tataaagctc
     1501 aatacaacta ggagtaaact ttatgaatat taaagactta cttaaagaga tcagctttaa
     1561 agctgtaatt aatgatctta atttttcatc gtgtctatat atcaaaccta atacatcaaa
     1621 attatatgtg atattaaatg gtgcattaat caaagaaccc agaaatccct taatttatca
     1681 tagacatagt tggcatctag aatttgatgg ctcagttcta tatatcgcag atccaacatt
     1741 atttaaatat gaatcaatta atttggcttg gtatgttgga gataaagata ctgatttata
     1801 tccatactta gctgaatttg taacttctgt tgctacacat ttgaatgttg agacagacca
     1861 tattgttact tatggttcaa gtggtggtgg atttgctgca ttacagttgg gagcaagaat
     1921 tggaaacggt gtagttaccg tttgtattaa tccacaaacc aacatcatga aatatgtacc
     1981 aagtcatcgt aatgcctttt taaacgcttg ctttgacttt aatgcggaag agtacgatag
     2041 tctttctaat caagagaaat ttaatgcttt agtattactt aaggaaaata catcaaagat
     2101 tttgtatatt caaaatactc aggatgaatt tcatcataaa tggcatttcc tcccattcct
     2161 agagttaaag gggatagatc tatcggaaat agaaaagacc cattggagag aacaacagag
     2221 caaagatgta aaagttattt tgtattctca tgaatcaggt catgcagctg aacctaagga
     2281 aatgattccc gagatattat ccgctgttga tcaactgata gctagctaaa atgctgtttt
     2341 atttggtatc tgattcttta actaggcttt cattatcaaa tgaaagccta gttgatcttg
     2401 gaagaataac atctatagga aattatcctt tcttgcataa tgcaaagaat gctaaatttc
     2461 ttatggtcga atccgcctgg caaggctaca aaaaccgttg gaaatataaa attgcctctt
     2521 atcctgataa tcctgaacga accaatgaaa agttggttcg tttagtagaa aaagcgaagg
     2581 ataaaggcat tccaacggtc ttttggaaca aagaagattc tgtgcatttt gatcgattta
     2641 ttgattcggc gaagcatttt gatcatattt ttaccgtaga tcaaaatgcc attgctcgtt
     2701 atagggaagt agtgcctgcg acaacaaccg tcaatgtcgg aatgttccct gttcagccca
     2761 aaatccataa ctttcaagga tttaatttta aacaccttgc cgcaaatttt gtagggagtt
     2821 acagtcatca tatccacaat aagcgtagag aaagacagga tatgttgttt ggtgcagcac
     2881 ttaaagcagg tcttccggta accatctttg atagaaactc tgatagaaaa tcggaaaatt
     2941 atcgttaccc aaaaaatagc tttaatttaa atgttcaacc taatgttagt tatactgaaa
     3001 ctgctaatat ttatcgtgat tatcttgttt ctttgaatat taatactgtc gaagattccc
     3061 ctacgatgtt ttctcgcaga gtcgttgaaa tattagcttg tggaggaata ttagtctcta
     3121 caccaagtat ggctatcgac aatatattta aagaatattg tcatatcgta caaagtgaag
     3181 atgaggctat agaattattc caacgtttaa aacgaggtgc ttctcgtgat gatttgaata
     3241 aagcgattgc aggctctgaa tttgtattga gtaactttac ttgggaacat ttcttatccc
     3301 aaatacagaa agttgtatat aggtaactta aatagcatta ttaaaaactc tctgccaa
//
LOCUS       DANMBQ010000191         3282 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.194, whole genome shotgun sequence.
ACCESSION   DANMBQ010000191 DANMBQ010000000
VERSION     DANMBQ010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3282
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.194"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..234
                     /locus_tag="PXE92_002541"
     CDS             <1..234
                     /locus_tag="PXE92_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761727.1"
                     /translation="GSSITADKLNVNNLAAISANLGAITAGSININNRFKVSNAGVVE
                     MRANSGNVGMVMNNNSIIVYDEQGRVRVKMGKL"
     gene            234..677
                     /locus_tag="PXE92_002542"
     CDS             234..677
                     /locus_tag="PXE92_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761728.1"
                     /translation="MLIGILCIIALAVLGLLFYFHKKKRKKVNKGVNMAEYGIQTFDT
                     ANVSTFSTNERLFKYIGTKNIKYGKFSFTVTEKYEGQLVFIISMLHSVHRKQATGYKT
                     NIPNLIHLENVSINDKTISGEVVCIFPFSLPADDSDYIQIVYGAY"
     gene            678..1277
                     /locus_tag="PXE92_002543"
     CDS             678..1277
                     /locus_tag="PXE92_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761729.1"
                     /translation="MSYGLSTFNINENFRSLSLQRKGRANFSNKIATIQAASDEIIVI
                     KYSDGQVCLLYRENGIATLATENATFAEYLIFSTNVPKSGGYGIEVYNSAGNVVFSSN
                     HKFLRPIEYVDLNPSKNVFRFTGQANRQYGIILSNFGFDFVINYDNGYSTSRSAKVSG
                     NFIEFGFCKYHYSGLYKTGMSYNSKAMYFNALVVDITGY"
     gene            1392..1685
                     /locus_tag="PXE92_002544"
     CDS             1392..1685
                     /locus_tag="PXE92_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761730.1"
                     /translation="MTTFNKILNPMYSTIASYSTQDDGSLNAKYVVGTGDDTDGEVTN
                     FVIITSEYKYIDAQSAKAITDAPLTKEDIGKTPTQIMLGRIYKHLKETGQIVV"
     gene            1846..2085
                     /locus_tag="PXE92_002545"
                     /pseudo
     CDS             1846..2085
                     /locus_tag="PXE92_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249173.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2232..2750)
                     /locus_tag="PXE92_002546"
     CDS             complement(2232..2750)
                     /locus_tag="PXE92_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761731.1"
                     /translation="MTTQVTPQIMRIIGQIVAATYGDDVPTNVQTIILRYPIRGIGFI
                     SSRRELSINNGEIARLMDKIPGDLEDPKDGMPFDCQGAFWLGYYQYCKLSNDVKNYTS
                     KELSIIGESLYGTQWQSNLARDLRLSDARSVREWVAGERKIPFGVWADLTELVKAKKA
                     NLSSILKKLTID"
     gene            complement(2820..>3282)
                     /locus_tag="PXE92_002547"
     CDS             complement(2820..>3282)
                     /locus_tag="PXE92_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761732.1"
                     /translation="GDRNYQLYIDLATGELVSKLGKGLTTREFDAAVKAFENAFNAKD
                     TAENTSPAESKETEQENKQETTKLVITKPTLKGSEKQIAWADEIINLFIAKIGDTSIP
                     VTATQEQITQAQAMVDNFFAMTNAGKWIEKFKGLNDSSEPKQFWLSVKYGW"
BASE COUNT         1034 a          572 c          614 g         1062 t
ORIGIN      
        1 gggagttcga tcactgcgga taagctaaat gtaaacaatt tagcggcaat atcagcgaat
       61 ctcggagcta ttacagctgg ttctattaat atcaataata gattcaaggt aagtaatgct
      121 ggagtagtcg aaatgcgagc caatagtgga aatgttggta tggtaatgaa taacaatagt
      181 attattgttt atgatgaaca aggtagggtt agagtaaaaa tggggaaatt atgattctaa
      241 taggtatttt atgtattatt gcattagcag tcttagggct gcttttttat ttccataaaa
      301 aaaaacgaaa aaaagtaaat aaaggggtaa atatggctga atatggtatt caaacttttg
      361 ataccgctaa tgtctctaca tttagtacca atgagcgatt atttaaatac attggaacta
      421 aaaatattaa gtatggtaaa ttttcattca cggtaacaga aaagtatgaa ggacaacttg
      481 tatttatcat tagtatgtta cattcagttc accgaaaaca agcaacaggt tataaaacga
      541 atattcccaa tcttattcat ttagaaaatg tttcgatcaa cgataaaacg atttcaggag
      601 aagttgtttg tatttttcct tttagtctac cggctgatga ttcagattat attcagattg
      661 tatatggagc atattaaatg agttacggac tatctacttt taacatcaat gaaaatttca
      721 gaagtttatc cttacaaaga aaaggacgag ctaacttttc taataaaatt gcaactattc
      781 aggcagcgtc agatgaaatt attgtcatta aatattctga tgggcaagta tgtttgctat
      841 atcgagaaaa tggtattgcc acattagcta cagaaaacgc aacatttgct gaatatctca
      901 tttttagtac aaatgtaccg aaaagcggag gttacggcat agaggtttat aactcagcag
      961 gaaatgttgt attttcatca aaccacaaat ttttaagacc tattgaatat gtcgatctaa
     1021 atccatcaaa aaatgttttt agatttacag ggcaagcaaa taggcaatat ggcattatct
     1081 tatccaattt tggctttgat tttgtcatta actacgataa cggatattca acatctagat
     1141 ctgccaaagt aagtggtaat tttattgaat ttgggttctg taaataccat tattctggtt
     1201 tgtataagac gggaatgagt tataattcaa aagcaatgta ttttaatgct ctggttgtag
     1261 atataacagg ctattaaaca ttaaacgcct tcatttaata gaggcgaact aaaattctga
     1321 ttacacattc atcgccgctt gtagcaatac aagcggtctt tttttatcaa caatccacaa
     1381 aaggaaaaat tatgacaact tttaacaaaa tcttaaaccc aatgtactca actatcgcaa
     1441 gttactcaac tcaagatgac ggctcactca atgctaagta tgttgttggc acaggtgatg
     1501 ataccgatgg cgaggtaaca aactttgtaa tcatcacaag tgagtacaaa tatattgatg
     1561 ctcaatcagc caaagcgatt acagatgcac cgctaacaaa agaggatatt ggcaaaacgc
     1621 caacgcagat tatgttaggt cgtatctata agcacttaaa agagacgggg cagattgtag
     1681 tgtaggggtc taaatgcaaa agcataaatt taagtttttc agaggcgatg acgtaagtta
     1741 tcgccttttt tttaggcaaa caaatggcga gcctgtaaat ttagagggta ttaggctgga
     1801 tttacacgcc atagtagagg gcagcacaga gcctcaaatt gagctaaccg tcgattagtg
     1861 gttgtggatg agcaatcatt aaaactgcaa gagttaaagc agactattaa tgagcaaacc
     1921 gagcaaatta aaacactcgg aacagtggta aataaactta ttgatgcatt acaacagtca
     1981 caaagtttaa atgtaagatc agaatctgct gtagcagcaa ccgaaaatca agatcattta
     2041 actgatggtg tgcagtatca aggcccagga cgtgctagag cttaactctg ttaacatctg
     2101 cactcaaaac ggctatagct ctagccgttt tttgtaattt ttcgcacgtt ttaacaggca
     2161 aatttggcaa aattagccat tgtgatttta ttttctataa ttaagccccg agaggggctt
     2221 taaagtcagt gctaatctat tgttaatttt ttaagaattg atgataagtt agcttttttg
     2281 gctttaacca attcggtcaa atcagcccaa accccgaaag ggattttacg ttcaccagcc
     2341 acccattcgc ggacactgcg agcatcagat aatctcaaat ctctcgctag attagactgc
     2401 cattgagtgc catacaatga ctcgccaatg atggatagct cttttgatgt gtaatttttt
     2461 acatcgttac ttaatttgca gtattgatag tatccaagcc aaaacgcccc ctgacaatca
     2521 aaaggcatcc cgtctttagg gtcctcgagg tcgcctggta ttttatccat taatcttgct
     2581 atctctccat tgttaataga tagctctctg cgactagaga taaaccctat ccctcttata
     2641 gggtatctca agattattgt ctgtacgttt gttggcacat cgtcaccata agtagcagcg
     2701 acaatttgcc cgataatgcg cataatttgt ggtgttactt gtgtagtcat aataatctcc
     2761 agttatctgt ttgttttagc cgtaagcctt tgctcttacg gcttatttgt tatctcaatc
     2821 taccatccat attttacgga taaccaaaat tgctttggtt cgctactatc atttagacct
     2881 ttaaattttt cgatccactt tccagcgttt gtcattgcaa aaaaattatc taccattgct
     2941 tgagcttgag taatttgttc ttgcgttgct gttactggga tagaggtatc accaatcttc
     3001 gcaataaaaa gattgatgat ttcgtctgcc caagcgattt gtttttcaga gccttttaat
     3061 gttggttttg tgattacaag cttagttgtt tcttgtttgt tctcttgctc tgtttctttg
     3121 ctttctgctg gcgatgtatt ttcagcggtg tctttagcat taaaagcgtt ctcaaatgct
     3181 tttacggcag cgtcgaactc tcttgttgtt aatcctttgc caagtttgct cactaactca
     3241 cctgtggcta agtcaatgta caactgataa ttccgatcac ct
//
LOCUS       DANMBQ010000192         3282 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.195, whole genome shotgun sequence.
ACCESSION   DANMBQ010000192 DANMBQ010000000
VERSION     DANMBQ010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3282
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.195"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(7..579)
                     /gene="pdxT"
                     /locus_tag="PXE92_002548"
     CDS             complement(7..579)
                     /gene="pdxT"
                     /locus_tag="PXE92_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HDL5761733.1"
                     /translation="MKIAILALQGAFSEHTDKLQQLGVESMEIRQLADLNQDFDGLIL
                     PGGESTVQGKLLRELGLLEPLRQKILNGLPTLGTCAGLILLAENLVNDDKKHLATLPV
                     TVKRNAYGRQLGSFLVEEEVKYLGKIPLTFIRAPYIESTGKDVEILAKISGKIVGVKY
                     QNQIGISFHPEVNNDLSFHRYFVEMCRKNK"
     gene            complement(579..1451)
                     /gene="pdxS"
                     /locus_tag="PXE92_002549"
     CDS             complement(579..1451)
                     /gene="pdxS"
                     /locus_tag="PXE92_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HDL5761734.1"
                     /translation="MTNRYDLNRQLAQMLKGGVIMDVTTPEQACIAEEAGACAVMALE
                     RIPADIRAAGGVSRMSDPKMIKSIQAAVSIPVMAKVRIGHVTEAQILQAIEIDYIDES
                     EVLSPADDTFHINKRKFEVPFVCGAKNLGEALRRINEGAAMIRSKGEPGTGNVVQAVH
                     HLRKMKQEIARLVSHTTDELYHVAKELQVPFDLVQYVHQYQKLPVVTFAAGGVATPAD
                     AALMMQLGAEGVFVGSGIFKSGDPAKRARAIVQAVTNYNDPKLLAELSEDLGEAMVGI
                     NEQEIELLMAARGV"
     gene            1662..3065
                     /locus_tag="PXE92_002550"
     CDS             1662..3065
                     /locus_tag="PXE92_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HDL5761735.1"
                     /translation="MLTYTFNTQEGTALYEQLYRFLKNDIESNILIAGDKLPSKRAFA
                     KHLGISVMTVETAYQQLVAEGYVNTQPKKGFFVNALNLPEKKEAISVQLQKISSEQYE
                     KNKKWQADLTNRQTLAENFPFSVWTKLVREVLKTHQSELMERAESGGVWTLKFAIANH
                     LRAFRGMIVNPTQIIIGAGTEYLYGLLIQLLGLDKHYALTEPSYDKLRRIYHSYRLST
                     ATVSMPFSIDELNSKNVDVIHTSPSHHFPTGHVMPIAKRYELLAWVAQKAERYIVEDD
                     YDSEFRFVGQPIPALKSIDMLGRVIYMNTFSKTLSSTVRIAYMVLPPELLNRFQQELG
                     FYASTVSNFEQYILAEFIQQGYFEKHINRMRAYYQKKRDKLLKAFKQGNLAEKIAIKE
                     EHSGLHFIVQLNTTLTERQILQAAEEQGIKFVALSAYYQDKSQIQQNAFIIGYSNLKD
                     DQINYVAESLKKILDNE"
BASE COUNT         1015 a          653 c          599 g         1015 t
ORIGIN      
        1 tttcttttac ttattttttc ggcacatttc cacaaaatag cggtgaaaac ttaaatcatt
       61 attcacttcg ggatggaagg atatacctat ctgattttgg tattttactc caacaatctt
      121 accgcttatc ttggctaaaa tttctacatc ttttccagtg ctttctatat aaggcgcacg
      181 aatgaatgtg agaggaattt taccgagata tttaacttct tcttctacta aaaacgagcc
      241 taattgcctt ccgtaagcat tacgtttcac tgttacaggc aaagtagcca aatgtttttt
      301 atcgtcgttt accaaatttt ccgcaagcaa aattaaaccc gcacaagttc caagcgttgg
      361 caagccattt aaaatttttt gacgaagcgg ctcaagcaag cctaattcac gtaataattt
      421 accttgaaca gtcgattcgc caccaggtaa aatcagacca tcaaaatctt ggtttaaatc
      481 agcaagttga cgaatttcca tactttcaac ccctagttgc tggagtttat cagtatgctc
      541 gctaaatgca ccttgcagag caagaatagc aattttcatt agacacctct tgctgccatt
      601 agcaattcaa tctcttgctc attaattcct accattgctt cacctaaatc ttcagaaagc
      661 tccgcaagta atttaggatc gttgtagttg gtaacagctt gtacaatggc ccgcgctcgt
      721 ttagcaggat cgcctgactt gaaaatacct gagccaacga agactccttc tgcacctaac
      781 tgcatcatca atgcagcatc ggcaggggtt gcaacacctc cagcagcaaa ggtgacaaca
      841 ggcaattttt ggtactgatg tacatattgt actaaatcaa atggtacttg gagctcttta
      901 gctacgtgat aaagttcatc tgtggtatgt gaaaccaagc gggcaatttc ttgtttcatt
      961 ttgcgaagat gatgtactgc ttgcaccaca ttgcctgttc ctggctcgcc cttactacgg
     1021 atcatagcag cgccttcatt aatacgacgt agggcttcgc ctaaattttt tgctccacat
     1081 acaaatggca cttcaaattt acgcttgtta atgtggaagg tatcatctgc aggagaaagc
     1141 acctcacttt cgtcaatata gtcaatttcg atcgcttgca ggatttgtgc ttctgtaacg
     1201 tgtccaatac gtactttcgc cattacagga atggataccg ctgcttggat actctttatc
     1261 atcttgggat cactcatacg agaaacgcca ccagctgcac gaatatctgc aggaattctc
     1321 tctagtgcca ttactgcaca agctccagct tcttccgcaa tgcaggcttg ctcaggggta
     1381 gttacatcca taattacacc gccttttaac atttgagcaa gttgtctgtt taaatcatag
     1441 cgattagtca ttgtactttt tccttctaat tgttgaataa ttgaactttt cgtagtttcg
     1501 attagctcgg cattaagttt atttttatat tcgctggatg cgagtgttca tctaccaatt
     1561 taaatacact cagccaattt gagtgaggaa acagcatgta ttgtaattta atctgaactg
     1621 tttaaaatga ccattttatg tttttcttat catgtcagat tatgcttacc tacactttta
     1681 acacacaaga aggcaccgct ctctatgagc aactttaccg ttttctaaaa aacgacattg
     1741 aaagcaacat acttatagca ggggataaac tgccgtctaa acgggctttt gcaaagcatt
     1801 taggcatttc agtaatgaca gtggaaacag cttaccaaca gttagtagca gaaggttatg
     1861 tgaatactca gcctaaaaaa ggcttttttg tgaatgcttt aaatttacca gaaaaaaagg
     1921 aagccatatc agttcagcta caaaaaatca gttcagaaca gtatgagaaa aataaaaaat
     1981 ggcaggcaga tttaactaat cgacagactt tagcagaaaa ttttccgttt tcggtttgga
     2041 caaaattagt acgcgaagtg ctgaaaacac accaaagtga gctaatggag cgtgctgaga
     2101 gtgggggcgt atggacatta aaatttgcga tagccaatca tcttcgagcc tttagaggaa
     2161 tgatcgttaa tccaacacag attattattg gagcgggtac ggagtatctt tacggtttgc
     2221 tcattcagct tctaggctta gataaacatt atgcactaac tgagcccagt tacgataaat
     2281 tgcgcagaat ttatcacagt tatcgcttat caacagccac agtatcgatg ccattttcaa
     2341 tcgatgagtt aaattcaaag aatgtggacg tgatacatac ctcgccatca caccattttc
     2401 cgacaggaca cgtaatgccg attgccaaac gttatgagtt gttagcttgg gttgcacaaa
     2461 aagctgaaag atatattgta gaagacgact acgacagcga atttcgtttt gtaggacaac
     2521 caattcctgc attgaaatct attgatatgc tcgggcgagt tatctatatg aatacttttt
     2581 ctaaaacgct ctcttcaact gtacgaattg cctatatggt tttgccacca gaattactga
     2641 atcgttttca gcaggaatta gggttttatg cttctaccgt ttccaatttt gagcaatata
     2701 ttttggcaga atttattcaa caaggctatt ttgaaaagca tatcaatcga atgcgagcgt
     2761 attatcaaaa aaagagggat aaattactaa aagctttcaa gcaaggcaat ttagcagaaa
     2821 agattgcaat aaaagaagaa cattcaggct tgcatttcat tgtacagcta aacacaacat
     2881 taacagaaag gcaaattttg caggcagcag aagaacaagg tataaaattt gtcgcattgt
     2941 ctgcttatta tcaagataaa tctcaaattc agcaaaatgc ttttataatt gggtactcta
     3001 atttaaaaga tgatcagatt aattatgtag cagagagcct gaaaaaaatt ttagacaacg
     3061 aatagcaagt atcaaaactg ctttaatttt tagcaaattg ccttaaaaac acgcaagtgg
     3121 taattatttt agtgattttt gcaaaaaatt accaaattct ccttgcaagg cattttgttt
     3181 tgcgtataat gcatggcaca caacgacgca ctgttgtgaa cgatttaaaa ttgatttcca
     3241 gtgcgtcgtt tctttttgtt ctttaacaat ttatcagaca at
//
LOCUS       DANMBQ010000193         3276 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.196, whole genome shotgun sequence.
ACCESSION   DANMBQ010000193 DANMBQ010000000
VERSION     DANMBQ010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3276
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.196"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(2..625)
                     /locus_tag="PXE92_002551"
     CDS             complement(2..625)
                     /locus_tag="PXE92_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5761736.1"
                     /translation="MQERITQQNERLSAYMDGQNVDTAFVETLTNSPELQQKWASYHT
                     IRSVMQGDEIILGRDFSAKMEALLENEEIESQANVEKPKGLLLKLKRWGTPIMQAGIA
                     ASVCLVAVLGVNSMNASDEIAQTQQPVLQTLPFSNSVEAVSYNAPVQDQPTEEQLELQ
                     QRKINALLENHELQRRTNNVKNLTLSEEEKQKAQTSSNTESEPNIQK"
     gene            complement(671..1243)
                     /gene="rpoE"
                     /locus_tag="PXE92_002552"
     CDS             complement(671..1243)
                     /gene="rpoE"
                     /locus_tag="PXE92_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000003307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HDL5761737.1"
                     /translation="MSEQITDQELVEKAQKGDKKAFNLLVVRYQNRVAGLLTRYVARD
                     DIPDIVQESFIKAYRSLESFRGESAFYTWLYRIAVNTAKNHLTSLGRRPPKEDILAED
                     AESYDVGAQLRESDTPENLILSEELKKVVFDTIENLPDELKTAIRLRELEGLSYEEIA
                     EVMECPVGTVRSRIFRAREAIDAKIKPLMQ"
     gene            complement(1465..3009)
                     /gene="leuA"
                     /locus_tag="PXE92_002553"
     CDS             complement(1465..3009)
                     /gene="leuA"
                     /locus_tag="PXE92_002553"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDL5761738.1"
                     /translation="MSNNNIIIFDTTLRDGEQSLKASLTVKEKLQIALALERLGVDVM
                     EVGFPVSSAGDFESVQTIARHIKNSRVAALSRAVAKDIDAAYEALKVAEAFRIHTFIA
                     SSALHVEAKLKRSFDDVVEMAVAAVKRARNYTDDVEFSCEDAGRTGIDNICRIVEAAI
                     NAGATTVNIPDTVGFCLPNEYGNIIHQVMNRVPNIDKAIVSVHCHNDLGMATANSLTA
                     VQNGARQIECTINGIGERAGNTALEEVVMAIKTRQEFMGVDTRINTQEIHRVSQMVSQ
                     LCNMPIQPNKAIVGSNAFAHSSGIHQDGMLKNKNTYEIMSPETIGLKKEKLNLTARSG
                     RAAVKGHMADMGYTETDYDLDKLYEAFLQLADKKGQVFDYDLEALAFIDMQQGDEDRL
                     KLDVITTQLISGLPASAFVQVELDGVRQSATSQGGNGPVEATYNAIMNIVGMELKMSH
                     YNLTAKGEGAEALGQVDIVVEYEGRKFHGVGLATDIVESSARALIHAINAIYRSQKVA
                     DLKAKK"
BASE COUNT          886 a          719 c          584 g         1087 t
ORIGIN      
        1 attatttttg tatatttggc tctgattctg tattggaaga agtttgtgct ttttgctttt
       61 cttcctcaga taaggttaaa tttttaacgt tattagtacg gcgttgtaac tcatggtttt
      121 ctaataacgc attaatctta cgctgttgaa gctctaactg ttcttctgtt ggttgatctt
      181 gaactggcgc attataactt accgcttcaa ctgaattgct aaatggcaat gtttgtaata
      241 ctggttgttg cgtttgagct atttcatcac tcgcattcat tgaattaacc cctaataccg
      301 caactaagca cactgaagct gcaataccgg cttgcataat tggagttccc caacgcttga
      361 gcttgagcaa taagccttta ggtttctcta catttgcttg agattcaatt tcttcatttt
      421 ccagtaatgc ttccatttta gcagagaaat ctctccctaa aatgatctca tcaccttgca
      481 tcacactacg aatagtgtga taacttgccc atttttgctg taattcaggg ctgttagtta
      541 atgtttctac aaatgctgta tcaacatttt gcccatccat ataagctgaa aggcgttcat
      601 tttgttgagt gatgcgttct tgcataattg actccaatga tttaaatctc ttctaaaata
      661 atctttctat ctattgcata agtggcttga ttttagcatc aatcgcttcc cttgctcgga
      721 aaatacggga acgtacagta ccaaccggac attccatcac ttctgcgatt tcttcgtaac
      781 ttagcccttc caattctctt aaacgaatgg cggttttaag ctcatcaggt aaattttcaa
      841 tcgtatcaaa cacgactttc tttaattcct cggataatat caaattctct ggcgtatcac
      901 tttcacgaag ttgcgcgcct acatcataac tttcagcgtc ttcggcaaga atatcttctt
      961 ttggcggtct tctgcctaaa gaggttaaat gatttttcgc agtattcact gcaatgcgat
     1021 aaagccacgt ataaaaagca ctttcgccac ggaaagactc taaagaacga taggctttaa
     1081 taaaagattc ttgcacaatg tccggaatat catctcttgc aacataacga gtcagcaaac
     1141 cggctactct attttgataa cgtacaacaa gtaaattaaa tgctttttta tcaccttttt
     1201 gtgctttttc gactaattct tggtcggtga tctgttcgct caactgcgga ctctcctaaa
     1261 tatcaatatg tcattttcca ttgcacactt tgttagtgtg tgctttatga caaaagttca
     1321 aaaaatttga aaaattgtgt aattttttac attcctagat aaaacctact taataaacta
     1381 agcaagcggt cggattttag cgaaattttg caaaaatttc aaaaaatccg accgcttgtc
     1441 tatgttatgc tttcgctcta taagttattt cttcgctttt aaatctgcca ctttttgtga
     1501 acggtaaatc gcattaatgg cgtgaattaa agctcgggct gaagattcca caatatcggt
     1561 tgccaaaccc acaccgtgga attttcgacc ttcatattcc actacaatat ccacttgccc
     1621 taatgcttct gctccttcgc ctttcgcagt cagattatag tgcgacattt ttagctccat
     1681 tcccacaatg ttcataatgg cattgtaagt tgcctcaact ggaccatttc ccccttgaga
     1741 tgtagcactt tgacgaacgc cgtctaattc cacctgtaca aaagccgaag ccggtaaacc
     1801 gctgattagt tgggtggtaa ttacatctaa ttttaagcgg tcttcatcgc cttgctgcat
     1861 atcaatgaag gcaagagctt ctaagtcata atcaaacact tgcccttttt tatcagcaag
     1921 ttgcaagaag gcctcataaa gtttatctaa atcgtaatcc gtttccgtat aacccatatc
     1981 agccatatgc cctttcaccg ctgctctacc tgaacgggca gttaaattca gcttctcttt
     2041 tttcaagccg atggtttccg gcgacataat ttcataagta tttttatttt tcagcatacc
     2101 gtcttggtga atacctgaag agtgagcaaa ggcattgcta ccgacaatcg ctttgttcgg
     2161 ctgaatcggc atattgcaaa gctggctgac catttggctg acacggtgaa tttcttgggt
     2221 attaatgcgg gtatcaaccc ccataaattc ttggcgggtt ttaattgcca ttaccacttc
     2281 ttcaagagcg gtgttaccgg cacgttcgcc aataccgttg atagtacact caatctgtct
     2341 cgctccgttt tgcaccgctg tcaatgagtt ggcggtagcc atacctaaat cgttatggca
     2401 gtgaacagag acaatcgctt tatcgatatt cggaacacgg ttcatcactt ggtggataat
     2461 attgccgtat tcattcggta aacagaaacc gactgtatcc ggaatattca ctgtggttgc
     2521 accggcatta atggcagctt ctacaatgcg gcagatgtta tcaattccag tacgcccagc
     2581 atcttcacag gaaaactcaa catcatcagt ataatttctg gcgcgtttta ccgctgcaac
     2641 cgccatttcg actacatcat caaatgaacg ttttaattta gcctcaacgt gtaatgccga
     2701 gctggcaata aaggtatgga tacggaatgc ttctgctact tttaaggctt cataagctgc
     2761 atcaatgtct tttgcaaccg ctcgggaaag cgccgccacc cggctgtttt tgatatgacg
     2821 agcgatggtt tgtactgatt caaaatcgcc cgctgaagaa actggaaaac cgacttccat
     2881 cacatcaacc cctaaacgtt ctaaagcaag ggcaatttgc aatttttctt ttacggttaa
     2941 acttgctttt aatgattgct caccatcacg taaagtcgta tcaaaaataa taatgttatt
     3001 gttgctcata gaagcctctt tttaggtgtt tttatttgat aaaaaaagcc cgcattttaa
     3061 ggtgcgggca agaatgtgga tagtccattt actttttcca atcaatcttt atcctcgcac
     3121 aaaatacgat aacagagata atcggagtaa ggtaaatttt tccatgttgt gttgtatgtt
     3181 tatgtttgca ttgttattca gtagttgagg tgtatattat ccttatccaa atcaatgtca
     3241 atagcatttt tctcttcacg caaccgttta ccagcc
//
LOCUS       DANMBQ010000194         3248 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.197, whole genome shotgun sequence.
ACCESSION   DANMBQ010000194 DANMBQ010000000
VERSION     DANMBQ010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3248)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3248)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3248
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.197"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(71..946)
                     /locus_tag="PXE92_002554"
     CDS             complement(71..946)
                     /locus_tag="PXE92_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5761739.1"
                     /translation="MWIWFTLLAAVAQAGRNAFQKQLSVNVPVLGVTLARFFYAVPLA
                     SGYLYFLYQYDDNLNIPHFPPLFFVYAIGAGLAQILATSLMVQLFHLKNYAIGVGLAK
                     SEAVWAALLGVLFFGVTISGIGWLGVVLGGVAIFLMTGSGNLRQLSWKTLFLGIASGL
                     CFALTSLWVREASLQLNSHYLLSAAWVLFSVISFEAVILVIYLALLQKETLIKFFRFP
                     KLGMLTSLFSFLGSFGWFNAMSLNHVAFVKTLGQVEIFFILGISYFVFKERLKIQDFI
                     GLILVVIAAILVVLG"
     gene            1054..1890
                     /locus_tag="PXE92_002555"
     CDS             1054..1890
                     /locus_tag="PXE92_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HDL5761740.1"
                     /translation="MLPHIYIGTGGYADTDLIGTLYPFGTAKEDFLFVYSQHYDTLEI
                     NSTFHAPIGQKAFEGMVQKAEGRLNFSVKLHQDFSHQRTATLDQAQLFLNALAPFTAE
                     GLLANLFVQFPTQFERMPLNRRYLAELCQWFADYPLAIEFRHPSWHIPAVFDTFAKSS
                     NLIWCNVDYPQNIGLPAFHFFANQRTAYLRLHGRNPNWWKGQSAAERHDYRYSDEELK
                     GLAELLFSRRTEFDRLYLYFENTTKSHAFYNIQTLKGFLAEKGFQIKPVPENLLGQQS
                     LF"
     gene            complement(1965..>3248)
                     /locus_tag="PXE92_002556"
     CDS             complement(1965..>3248)
                     /locus_tag="PXE92_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5761741.1"
                     /translation="SIEISTNGSAHSAQKIKLFETTNEEDFSLNLANEVHSGEYRYHL
                     LKEGNVYYLNPEKEEEPKITQKGPSETADPLPEYTGDIEYSEKGPGETADPLPEYTGD
                     IEHSEKGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNGNAHLIASELTAQTNAVL
                     GVTTALDHVIHSEGTQNWKVWSKTDYQTTEHRSAGYGFNQDANVIHLGLEKALDNQVT
                     LGMILSQSKARNNFDHYYSGKGRLTMLSMYAKKTWQNGVFVAIDTGFGKASNRLTYQA
                     NTVKLDRSVFVTGLSIGKAWESANVNIIPSFSARYHHLSSAGNQLVDAKIETNAVDLL
                     ALQAGLSINKTLELNGLQIKPEIGSYFVDASHGKLRTRFNNLQIEQQMGRYFKQEAGI
                     SANYRNINAGIQAGFLTGNTLNKQRYISFKVTYEW"
BASE COUNT          943 a          711 c          639 g          955 t
ORIGIN      
        1 aatgatttat tggttttgcg tgggcttacg cccaccctac aaagctagat aaaaaacgta
       61 aaaatccgat ctagcccagc accaccaaga ttgcggcaat cactactaaa atcagcccta
      121 taaaatcttg aattttaagc cgttctttaa acacaaaata ggaaataccg agaataaaga
      181 aaatttccac ttgtccaagc gtttttacaa aggcaacgtg gttcaggctc attgcattga
      241 accaaccgaa tgagccgaga aatgaaaaca ggctggtcaa catacctaat tttggaaaac
      301 gaaagaattt aatcagtgtc tctttttgga gaagagctag gtatataacc aatatcactg
      361 cctcaaagct aatcacgcta aaaagtaccc acgccgctga aagcaaatag tggctgttga
      421 gttgcaggct tgcctctcgc acccaaagtg atgtgagggc gaaacataaa ccgctggcta
      481 tgccgagaaa gagtgttttc cacgaaagtt ggcgtagatt accgctgccg gtcattaaga
      541 aaatcgccac tccacctagt accacgccaa gccagccaat gccactgatg gttacaccaa
      601 aaaataacac gcccagtaaa gccgcccata ctgcctcgct tttcgccagc ccgacaccta
      661 ttgcataatt ttttaagtga aaaagttgca ccattagcga agttgccaga atttgagcca
      721 acccagcccc gatagcatat acaaaaaaca gcggtggaaa atggggaatg ttgaggttat
      781 cgtcatattg gtataaaaaa tagagataac cgcttgccaa cggcacagca tagaaaaagc
      841 gggcgagcgt tacccccaat acaggcacat tgacgcttaa ttgcttttga aaggcattgc
      901 gaccggcttg agccacggct gccagcagag taaaccaaat ccacataatg atgatgaaat
      961 aagaaaagat agccaaatct tactctttta ttctcagttt gcaagcggtt aaaaaaccat
     1021 taaaatttgc aaaaaattga aagaataaac acaatgctcc ctcatattta tattggcacc
     1081 ggcggctatg ccgacacaga tttaatcggc acgctttacc cattcggcac tgcaaaagag
     1141 gattttctct ttgtctatag ccaacattac gacacgctgg aaattaacag cacattccac
     1201 gcccccatcg ggcagaaagc ctttgaagga atggtgcaga aagcggaagg tcggctgaat
     1261 ttttcggtga aactgcatca agatttcagc catcaacgca cggcgacttt agatcaagca
     1321 caattatttc ttaatgcgtt agctccgttc accgctgaag ggttattggc aaatttattt
     1381 gttcagttcc caactcaatt tgaacgtatg ccacttaacc gccgttacct tgccgagttg
     1441 tgccaatggt ttgcggatta tccgttagcg attgaatttc gccacccaag ctggcatatt
     1501 ccggcggtgt ttgatacctt tgcgaaaagc tctaatctga tttggtgtaa tgtggattac
     1561 ccacaaaata tcggcttacc ggcatttcac ttttttgcca accaacgtac tgcttattta
     1621 cgcttacatg gtcgtaaccc gaattggtgg aaagggcaga gtgcggcaga acgccacgat
     1681 taccgctatt cagacgagga attaaaaggc ttggcagaat tgctttttag ccgcagaacg
     1741 gaatttgaca ggctctatct ctactttgaa aacaccacta aaagccacgc cttttataat
     1801 attcaaaccc taaaaggctt tttggcggaa aaaggatttc aaatcaaacc tgtgccggag
     1861 aatttgcttg ggcagcagag tttgttttga tgggtaattt acattgttga ggagtaaata
     1921 aagggccatg ccatttagta atggatagcc cttaatctca atatttacca ttcatatgta
     1981 actttgaacg agatataacg ctgtttattt agcgtattcc ccgttaagaa acctgcctga
     2041 attcctgcgt ttatattgcg ataattagcg gatatacctg cttcttgttt aaaataacgc
     2101 cccatttgct gctctatttg taaattattg aaacgtgttc ttaatttccc atggcttgca
     2161 tcaacaaaat agctacctat ttccggtttt atttgcaggc catttagttc aagcgtttta
     2221 ttaattgaca gaccagcttg aagagcgaga agatcaacag cgtttgtttc gatttttgca
     2281 tctacaagtt gattacctgc tgaagataaa tgatgataac gggcgctaaa tgatgggatt
     2341 atattcacgt ttgcagattc ccatgcttta ccgatactaa gccctgttac aaatactgaa
     2401 cgatctaatt ttactgtatt tgcttgataa gttaagcgat tgcttgcttt cccaaaaccg
     2461 gtatctatcg caacaaaaac accattttgc catgttttct tcgcatacat tgatagcatt
     2521 gttaagcgac ctttaccgct ataataatgg tcaaaattat ttctcgcttt tgattgagat
     2581 aatatcatac caagtgtgac ctgattatct aaggctttct ctaatcctag atggataacg
     2641 ttcgcatctt ggttaaatcc atatccggca gagcgatgct ctgtcgtttg ataatctgtt
     2701 ttagaccata ctttccaatt ttgggtccct tccgaatgaa ttacatgatc taatgctgta
     2761 gttacaccta atacagcatt agtttgcgca gttaactcgg atgcgatcaa atgtgcattt
     2821 ccattgtatt taggtaatgg ctcagcggtt tcacccgatc ctttttctga atgctcaatg
     2881 tctcctgtgt attcaggtaa cggatcagca gtttcacccg gccctttttc cgaatgctca
     2941 atgtctcctg tgtattcagg taacggatca gcagtttcac ccggcccttt ttcagaatac
     3001 tcaatatccc cggtgtattc aggtaatggg tcagcggttt cacttggccc tttttgagta
     3061 attttaggtt cttcctcttt ctctggattg aggtaataca cattcccttc tttgagtaaa
     3121 tggtagcgat attcgcctga gtgcacttca tttgctaaat taagagaaaa gtcttcttca
     3181 tttgttgttt caaataattt aatcttttgg gctgaatggg cgctaccatt tgtgctaatt
     3241 tctatcga
//
LOCUS       DANMBQ010000195         3243 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.198, whole genome shotgun sequence.
ACCESSION   DANMBQ010000195 DANMBQ010000000
VERSION     DANMBQ010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3243
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.198"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            78..1400
                     /gene="pepP"
                     /locus_tag="PXE92_002557"
     CDS             78..1400
                     /gene="pepP"
                     /locus_tag="PXE92_002557"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HDL5761742.1"
                     /translation="MDLAYLAKMPQEEFTARRERVLEQMQDNSALLVFTESEKRRNSD
                     SEYLFRPDSYFWYLTGLAEPKSAVLLVKSEGKTESIIFVRKKDPLMETWNGRRLGIEE
                     APKTLQLNAAFDIDDIETVLAKKLENLTACYCALGIQEWGDNILFATFEKMKVNRQKV
                     PTTLIDWQPMLSEMRLIKSEFEIALIQQACHISSMAHIRAMKQARPNRYEWEIEGEIQ
                     HEFSRFGARFPAYNSIVAGGENACILHYNENDQVLKGGDLLLIDAGAEFAYYAGDITR
                     TFPINGKFSEPQKELYELTLTMQKEAINLLVPNSSIKAANDKAVQILTQGLVRLGILN
                     GDVESLIEQKAYRQFYMHGLGHWLGLDVHDVGDYGTERDRPLQIGMVLTVEPGIYIPK
                     DADVPEQYKGIGIRIEDNLLITEYGNKNLSSGCPKEIADVEQLMQSLN"
     gene            1516..1701
                     /locus_tag="PXE92_002558"
     CDS             1516..1701
                     /locus_tag="PXE92_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1508 domain-containing protein"
                     /protein_id="HDL5761743.1"
                     /translation="MYFEIYKDAKEEFRWRLKAGNHEVIATNQAYTTKQGCQKGIEAV
                     KKVTPETEVKDLTKAEA"
     gene            1830..3146
                     /gene="argA"
                     /locus_tag="PXE92_002559"
     CDS             1830..3146
                     /gene="argA"
                     /locus_tag="PXE92_002559"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HDL5761744.1"
                     /translation="MQNTELALAQWFRQSTPYVNMHRGKTFVIMLDGDVIESPNFVNI
                     INDISLLHSLNIKLVIVFGARPQINQLLKQNHIEPEYYHNIRVTNPQSLEYVKQAVGK
                     VHYDFFARLSLRLPHSEVINVVSGNMILAQPIGVVDGVDYTLSGKIRRINIESIKQQL
                     AQNSIVLLGPIAPSVTGEMFNLPFEDIATQVAIKLRADKLIGFCEEQGILDENGKPIP
                     DYLPQDGETLLQQLIERGEYHTPKARFLQAANTVCREGVKRSHLLSYKEDGSLLQELF
                     SRDGIGTQFSMESSEQVRIANSSDIPGLLDLIRPLEQQGILVKRSREQLEMEITNYTI
                     IERDGVVIACAALNPYPEEKMAEMACVAVHPDYRDSSRGDILLENIQKRAVQLGMEKL
                     FVLTTRTTQWFQERGFRLAGAQDLPRYKRENYNYQRRSKVLILPLW"
BASE COUNT         1024 a          568 c          737 g          914 t
ORIGIN      
        1 tggttaggct gaatttatgc tgcgtttgtg ctaaaataag gcaggtttcg atatagatat
       61 aataaaaagg agaaataatg gatctcgctt atttggctaa aatgccacaa gaagaattta
      121 ccgcacgccg tgagcgtgtg cttgagcaaa tgcaggataa ttctgcgtta ttggttttta
      181 ccgaatcgga aaaacgccgt aatagtgact ctgaatactt gtttagacct gatagttact
      241 tttggtattt aaccggtttg gcagaaccta aatcagccgt attgctggta aaaagcgaag
      301 gtaaaacgga aagtattatt tttgtgcgta aaaaagaccc tttaatggaa acctggaatg
      361 gcagacgttt agggattgag gaagctccaa aaacgttaca gcttaacgca gcttttgata
      421 ttgatgacat tgaaaccgtt cttgcaaaaa aattagaaaa tctgaccgct tgttattgtg
      481 cgttagggat acaagagtgg ggcgataata ttttgtttgc aacatttgaa aaaatgaaag
      541 tcaatcggca aaaagtgccg acaaccttga ttgattggca gccaatgtta tcggaaatgc
      601 ggttgattaa atcagaattt gaaattgcct taattcagca ggcgtgtcat atttcttcaa
      661 tggcacatat tcgagcgatg aaacaagctc gcccgaatcg ttatgagtgg gaaattgagg
      721 gggaaattca acacgaattt agccgttttg gagcaaggtt tccggcatat aattcaatcg
      781 ttgccggcgg tgagaatgcc tgtattcttc actacaatga aaatgatcag gtgcttaaag
      841 gcggcgattt attactgatt gatgcagggg cggaatttgc gtattacgcc ggcgatatta
      901 cccgaacctt ccctattaat gggaaattct ccgaaccgca aaaagagctg tacgaattaa
      961 ccttaactat gcaaaaagag gcgattaatc ttcttgtgcc aaacagctcg attaaagcgg
     1021 caaacgataa ggctgtacag attctcacgc agggcttggt tcgcttagga attttaaacg
     1081 gtgatgtgga aagcctgatt gagcaaaaag cctatcgcca attttatatg cacggattag
     1141 ggcattggct agggctagat gttcacgatg tgggggatta cggcacggag cgggatcgtc
     1201 ctttgcagat tggtatggtg ttaactgttg aacccggtat ctatattcct aaagatgcgg
     1261 atgtaccgga gcaatataaa ggtattggga ttcggattga agataatttg ctgattaccg
     1321 aatacggcaa caaaaactta agcagcggtt gccctaaaga aattgcggat gttgagcagt
     1381 tgatgcaatc gttaaattaa ttcgcaaatt tttgtaaaaa aatgaccgct tgctttgata
     1441 ttttggggaa tttagcttaa gctaacccga cacaaacaca gtgtttgggc aatcacaaca
     1501 cgaaggagtg tttatatgta ttttgaaatt tacaaagatg caaaagaaga atttcgttgg
     1561 cgtttaaaag cgggtaacca cgaagttatt gcaaccaacc aagcttatac gactaagcaa
     1621 ggttgtcaaa aaggcattga agcagttaaa aaagttacac ctgaaacaga agtaaaagat
     1681 ttaaccaaag ctgaagcata atctataaag ccctgatatt atttcagggc tttgttattt
     1741 atgcaaatat aatgcttaat tattcaattt aaggcttgcg gatttttcta aaaaagataa
     1801 tatgcgttta tattataaag aggaaatata tgcaaaacac agaactcgca ttagctcaat
     1861 ggtttaggca atctacacct tatgttaata tgcacagagg caaaaccttt gtgattatgc
     1921 ttgatggcga tgttatcgaa agcccgaatt ttgtcaatat tatcaatgac atcagtctcc
     1981 tgcacagcct gaatatcaaa ttagtgattg tatttggggc aagaccgcaa attaaccaat
     2041 tgttaaaaca aaatcatatt gagccggagt attaccacaa tatccgtgtg actaatccac
     2101 aatcgctaga atatgtgaaa caagcggtag ggaaagttca ttatgatttc tttgcccgcc
     2161 tttctttgcg tttaccccat tctgaagtga ttaatgtagt cagtggtaat atgattttag
     2221 ctcagccgat tggcgtggtg gatggggtag attatacact aagcggtaaa atccgtcgta
     2281 ttaatattga gagcattaag cagcaactgg cacaaaattc gattgtatta cttggtccga
     2341 ttgccccgtc tgttaccggt gaaatgttta atctgccgtt tgaagatatt gccacacagg
     2401 ttgcaattaa acttcgtgcc gataaattaa tcggtttttg tgaagagcag gggattttag
     2461 atgaaaacgg caagccaatt ccagattatc ttccgcaaga tggcgaaacc ttgttacagc
     2521 agttaatcga gcgtggcgaa tatcacaccc cgaaagctcg gtttttgcag gcggcgaaca
     2581 cggtatgccg agagggagtg aaacgctcgc atttattaag ctataaagaa gatggctcat
     2641 tgcttcaaga gttattctct cgtgatggta ttggcacaca gttctcaatg gaaagctcgg
     2701 aacaggtacg tattgctaat tccagtgata ttccgggatt attggattta atccgcccac
     2761 ttgaacagca gggcatttta gtcaaacgct ctcgagaaca attagaaatg gaaatcacaa
     2821 actacaccat tattgagcgt gatggtgtgg tgattgcttg tgcggcactt aacccgtatc
     2881 cggaagaaaa aatggcggaa atggcgtgtg tggcggttca ccctgattat cgtgattcct
     2941 caagagggga tattctactg gaaaatattc aaaaacgggc agtgcaactg ggaatggaga
     3001 aactctttgt gctgactaca agaaccacac aatggttcca agagcgagga tttaggctgg
     3061 caggtgccca agatttacct cgctataaac gggaaaatta caattatcaa cgtcgttcta
     3121 aagtattaat tttaccactt tggtaaaata ttcaatgttt ttgaccgctt gttaccaaga
     3181 gaactataaa aggagaacta tgaaaaaaca tcaacccatc aaaggggcta tggcaattat
     3241 tac
//
LOCUS       DANMBQ010000196         3239 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.199, whole genome shotgun sequence.
ACCESSION   DANMBQ010000196 DANMBQ010000000
VERSION     DANMBQ010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3239
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.199"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            16..249
                     /locus_tag="PXE92_002560"
     CDS             16..249
                     /locus_tag="PXE92_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cro/Cl family transcriptional regulator"
                     /protein_id="HDL5761745.1"
                     /translation="MEELKAYLNSLTTKEQESFALRCNTTVGYLRKSISRNSRLGAEI
                     CVAIERETKGLVTRKHLIEDWHLRWPELANDKQ"
     gene            406..648
                     /locus_tag="PXE92_002561"
     CDS             406..648
                     /locus_tag="PXE92_002561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5761746.1"
                     /translation="MYGINLNLNEKSSQTQNARILAHLQNGGRITSLSALDDFGCLRL
                     SARIKDLRDRGHDIQSVFITVPNGKKVKQYFMECAK"
     gene            645..996
                     /locus_tag="PXE92_002562"
                     /pseudo
     CDS             645..996
                     /locus_tag="PXE92_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596652.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1134..1418
                     /locus_tag="PXE92_002563"
     CDS             1134..1418
                     /locus_tag="PXE92_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761747.1"
                     /translation="MLLEQFGITGKLAEDFIVHRKAKKAPITETALNGYQREADKAKI
                     PIQKAVEIAIERGWTGFKADWQWQDDQPKHRPKDNMRAEWNNPEAWAEVF"
     gene            1418..2065
                     /locus_tag="PXE92_002564"
     CDS             1418..2065
                     /locus_tag="PXE92_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL5761748.1"
                     /translation="MSLQKTEQNRPLAVLGEQQGKLSGEVESLVDRIFDQLLASCPSI
                     QYWSEKQVATAKKQWILGFAENGIRTVEQVRQGMKALRAKTDDFVPSIGKFIQWCNTI
                     DYHELGLPDLEQLLKLLDRSLRFDFIEIQKLKFKSNAEYWLITDLYARNKKYSWKDET
                     LRNQAEKALVAMAKRIMSGEQIPPPKPLIEEKKKVPIDPRIQRILDEKKQAGAMQ"
     gene            2062..2634
                     /locus_tag="PXE92_002565"
     CDS             2062..2634
                     /locus_tag="PXE92_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5761749.1"
                     /translation="MTDFDKDTYQTPKYFRNWLNHRYAWFHIDGCSNGKNALYSYWIG
                     KAAEGLDEDTLSGQIAEDFLAENLLDVILERVADWGELLRIFVNPPYSNPLPFVQRAA
                     ELKKAGHIVVMLLPADKSTRWYQVIQENASEVIDIIGGRINFINPLTGEEVKGNNKGS
                     MVAVFDPFVEGIVTRQMPLDKIKELGGYEK"
     gene            2753..3205
                     /locus_tag="PXE92_002566"
     CDS             2753..3205
                     /locus_tag="PXE92_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HDL5761750.1"
                     /translation="MAKYQMMKLPGGILSPLNDEEAERLKSFQNGEQYEIEIKRQRNP
                     AFHRKVFAFFNFCFDCWSGSHSDWEFQDPTAQFDTFRKHLTVMAGFYVQTWNLKGQVR
                     IEAKSLSYANMEQDEFEQAYKALINAAIKHVFNNTKDENTINQLYSFF"
BASE COUNT         1040 a          575 c          760 g          864 t
ORIGIN      
        1 aaaagaggac tcacaatgga agaattaaaa gcatacctca attctttaac cacaaaagag
       61 caagagagtt ttgccttgcg ttgtaatacg acagttgggt atttaagaaa atcgatctca
      121 agaaattctc gattaggtgc ggaaatttgc gttgcgatag agcgtgaaac aaaaggttta
      181 gttactagaa agcatttaat tgaagattgg cacttacgct ggccggaatt ggcaaatgac
      241 aagcaataaa gggaaagttt tttctaaaaa actcaaatca ttctaccaca gtaaaaattc
      301 aatttttatt agagtggcaa tttttatgct gcttgcgtgg tgggttttta acaattaaaa
      361 aaaccaccgc tgtaacggtg gctaattact aaggaggttt cctatatgta tgggataaat
      421 cttaacctaa acgaaaaatc aagtcaaacc caaaatgcaa gaattttggc acatcttcaa
      481 aatggcggtc gtattacttc gctttctgcg ttagacgatt tcggctgctt gcgtttatcc
      541 gctcgcatta aagatttgcg tgaccgtggt cacgatattc aaagcgtatt tattacagtg
      601 ccgaatggca agaaagtgaa gcagtatttt atggagtgtg cgaaatgaga tttagcactt
      661 acatcaacaa tgcaaaatgc cttgaatgga acttaaatgc taatcaagga gcattatttg
      721 atttactgaa tcaagctcct gcttgggcga aagaaatcat tattgatggc gtggtttatt
      781 actgggtttc ccgtaatgcg gtgatcgaag aactaccttt gttttactca aagcctgata
      841 ccgtctatcg ccattttgtc gagtttcaca aaaaagggtt gatcgtgtat caaaaacacg
      901 gagataaaga ccttattcga ttaactgaaa aagggaagac ttggaatgag tttaactcgg
      961 atttaaatcc gacactcgga aataaatccg agttagctcg gaaacagatc cgaaaaagct
     1021 cggatttaaa tccgacaaat aataatacta attataaaaa tactaatgat cataataata
     1081 cccttacggg tattaacgca cacacacgtg agactaaaaa atctgctgtg ttggtgttgc
     1141 ttgaacaatt cggcattaca ggcaaattgg cggaggattt tatcgtacac cgcaaagcca
     1201 aaaaagcccc gattaccgaa actgcactga atggctatca gcgagaggca gacaaagcca
     1261 aaatcccgat tcaaaaggcg gtagaaattg cgattgaacg tggctggaca ggatttaaag
     1321 ccgattggca gtggcaagac gatcaaccta aacatcgccc aaaagacaat atgcgagctg
     1381 aatggaataa ccctgaagcg tgggcggagg tgttttgatg agcctgcaaa aaacagagca
     1441 aaatcgaccg cttgcggtgt taggtgagca gcaaggcaaa ttatccggtg aggttgaaag
     1501 ccttgtggac agaatatttg accagttgct tgcgagttgc ccaagtattc aatactggtc
     1561 ggaaaagcaa gttgccacag ccaaaaaaca atggatttta ggctttgcgg agaacggaat
     1621 ccgcacggtt gagcaagttc gacagggtat gaaagcgtta agagcaaaaa ctgatgattt
     1681 cgtcccgagt atcggcaaat ttatccagtg gtgcaatacg attgactatc acgaattagg
     1741 attacctgat ttagagcagt tactcaagct tttggatcgc tctttaagat ttgattttat
     1801 tgagattcag aaacttaaat ttaaatcaaa cgctgaatat tggttgataa ctgacctata
     1861 cgcacgtaac aagaaatata gttggaaaga tgaaacctta cgtaatcaag cagaaaaagc
     1921 cttagtggca atggcaaaac gaattatgag cggagagcaa attccaccac ctaaaccgct
     1981 aatcgaagag aaaaagaaag tgccaataga tccacgcatt cagcgaattt tggacgagaa
     2041 gaaacaagca ggagcaatgc aatgacagat tttgataaag acacttacca aacgccaaag
     2101 tatttccgta attggctaaa tcatcgctat gcgtggtttc acattgacgg ttgttctaac
     2161 ggcaaaaacg cattgtatag ctactggatt ggcaaagcgg cagaaggctt ggacgaagac
     2221 acgctaagtg gtcagattgc cgaggatttc ttggcagaaa acttgctcga tgtgatcttg
     2281 gaacgtgtgg cagattgggg cgaattactc cgtatcttcg ttaatccgcc atatagcaat
     2341 ccactccctt ttgttcagcg tgctgcggag ctgaaaaaag ccggtcatat tgtggtaatg
     2401 ctgttgccgg cagacaaatc tactcgttgg tatcaggtta tccaagaaaa cgctagtgag
     2461 gtgatcgaca ttatcggtgg gcgtattaat tttattaatc cgctcacagg cgaggaagtg
     2521 aaaggcaaca acaaaggctc gatggtagcg gtgttcgacc cgtttgtgga gggaatagtt
     2581 acccgtcaaa tgccgctgga taagattaag gagctgggcg gctatgaaaa ataacgaagg
     2641 gtgggaagtg tgatgagtga ttctactatt ggatttttag ggattctaat tttcttcggg
     2701 tggttagcat atttggtatt tagagctttt ggattttcat tgagggatag agatggctaa
     2761 ataccaaatg atgaaattgc cgggtgggat tttaagcccg ttaaacgatg aagaagccga
     2821 gcggttgaaa tcgtttcaga atggcgagca gtacgaaatc gagattaaac gccagcgtaa
     2881 tcccgctttt catcgcaagg tgtttgcgtt ctttaatttc tgttttgatt gctggagtgg
     2941 tagccattcc gattgggagt tccaagatcc aaccgctcaa tttgatactt tccgcaagca
     3001 tttaactgta atggcagggt tttatgtgca gacgtggaat ttaaaagggc aagtgcggat
     3061 tgaggcgaaa agcctaagct acgccaatat ggaacaagac gagttcgagc aggcttataa
     3121 agcgttgatt aatgcagcta tcaagcacgt ttttaacaat accaaagatg agaatacgat
     3181 aaatcagttg tattcgtttt tttaattaag gcgaaatcgc catatttaat taggtttaa
//
LOCUS       DANMBQ010000197         3229 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.200, whole genome shotgun sequence.
ACCESSION   DANMBQ010000197 DANMBQ010000000
VERSION     DANMBQ010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3229)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3229)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3229
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.200"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..844
                     /locus_tag="PXE92_002567"
     CDS             <1..844
                     /locus_tag="PXE92_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5761751.1"
                     /translation="AGVLFACINTLIPKLTSISPIDSNVIALVQYLAAFIFLVPSMNN
                     IGFFSSLKTEHFGQHCFRIFLSAIGIQCWTMALANQLPIWQGIALLMTSPLFVTIGSG
                     LFLKEKVDKKRWIATAMGFVGAMIILEPWSDHFEMIALLPIAAAFFWAGYSLMVKKLS
                     RYDSPTTMVAYLFILITPFNLLIALTNLSPSGFSLPSWSDFGFLILLGFFTALAQLAV
                     AKAYSVADASYIQPFDFIKLPLNVLAGWLVFNWVPPGKLWLGAAIIIAATIYITHAET
                     KQSN"
     gene            complement(923..1414)
                     /gene="ilvN"
                     /locus_tag="PXE92_002568"
     CDS             complement(923..1414)
                     /gene="ilvN"
                     /locus_tag="PXE92_002568"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDL5761752.1"
                     /translation="MRRTLAVLLENESGALSRVVALFSQRGFNIESLTVAPTDDPSLS
                     RMTIVAQGEEQVLEQIEKQLHKLIDVFKVSNLSAYEHVEREVLLVKVRATGSSRDELK
                     RMVDIYRGQIVDLTPKLYTIQLSGSTEKLNAFIEAVKEETTIVEIVRSGVISLSRGDK
                     NAL"
     gene            complement(1407..3128)
                     /locus_tag="PXE92_002569"
     CDS             complement(1407..3128)
                     /locus_tag="PXE92_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HDL5761753.1"
                     /translation="MKKLSGAEMIVQSLKDEGVEYVFGYPGGSVLDIYDAIHTLGLNH
                     VLVRHEQGAVHMADGYARSTGKVGCVLVTSGPGATNTITGILTAYTDSVPLVILSGQV
                     PSSLIGTDAFQESDMIGISRPVVKHSFLVKNTEEIPEIIKKAFYIASTGRPGPVVIDI
                     PKDVVNPLNKYPYEYPQEVSMRSYNPTVQGHKGQIKKALKALLVAKRPVLYVGGGVIS
                     AEGSPEITEFAQKLNLPVTCSLMGLGAYPASDKQYLGMLGMHGTFEANNAMHESDLIL
                     GIGVRFDDRTTNNLAKYCPNAKVIHVDIDPASISKTVQAYIPIVGSAKDVMEEFLSLL
                     GEENLAKNQVDLTAWWQQIDAWKARNCLAFEENSDVIKPQQVIRMIHKLTNGEAYVAS
                     DVGQHQMFAALHYGFDKPRRWINSGGAGTMGFGLPAAMGVKFAHPDATVVCVTGDGSI
                     QMNIQELSTAKQYDTPIVIVSLNNRFLGMVKQWQDIIYSGRHSQVYMNSLPNFAKLAE
                     AYGHVGIQIDHPSELEAKLTEAFSIKDKLVFVDVLVDETEHVYPMQVRGGAMNEMMLS
                     KTERTDA"
BASE COUNT          890 a          697 c          607 g         1035 t
ORIGIN      
        1 tgccggtgtg ttatttgcct gtatcaatac cttaattccc aaattaacgt ccatttcacc
       61 gattgactcg aacgtgattg cattggtgca atatttagct gcctttattt tcctcgttcc
      121 cagcatgaat aatatcggtt tcttctcttc attaaaaacc gagcattttg ggcaacactg
      181 tttccgtatt tttctatctg cgattggtat tcaatgttgg acaatggcac tcgctaacca
      241 attacctatt tggcagggaa ttgcgttatt gatgacttct ccattgtttg tgaccatcgg
      301 ctccggtctg tttttgaaag agaaagtgga taaaaagcgt tggattgcaa ccgcaatggg
      361 gtttgttggg gcgatgatta ttctagagcc ttggagcgat cattttgaaa tgattgcgtt
      421 actgccgatt gccgcggctt ttttctgggc aggttattcg ctaatggtga aaaaactctc
      481 tcgttacgat agcccaacta cgatggtcgc ttacctgttt attctaatta cgccttttaa
      541 tttgttgatt gcactcacga accttagccc tagtgggttt agtctgcctt cttggagcga
      601 tttcggcttt ttaatcttac ttggtttctt tacggcgtta gcgcaactgg cggtagccaa
      661 agcctacagt gtagcagatg cttcctacat tcagccgttt gattttatta aattaccttt
      721 gaacgtatta gccggttggc ttgtatttaa ctgggtgcca ccgggtaaat tatggctagg
      781 agctgcgatt attattgctg cgaccattta tattactcac gctgaaacta aacagagtaa
      841 ttagcaacaa attcacgcta cataaaaatc cctttatctc aaagataaag ggatttgcaa
      901 attttaagct aaaattgacc gcttacagag cgtttttatc gccacgagat agactaatca
      961 cgccagagcg aacaatctct acaatcgttg tttcttcttt aactgcctca ataaatgcat
     1021 tgagcttctc ggtagaaccg gataattgaa tggtgtaaag tttcggtgtt aaatctacga
     1081 tttgcccacg gtaaatatct accatacgtt tcagttcatc acgagatgaa cctgtagctc
     1141 gcacttttac caataacact tcacgctcaa cgtgttcata agcacttaag ttactcactt
     1201 taaacacatc aatgagtttg tgtagttgct tttcgatttg ttctaacacc tgttcttcgc
     1261 cttgcgcgac aattgtcata cgggaaaggc ttggatcatc agtaggggca acggtcaagc
     1321 tttcaatgtt aaaaccacgc tgcgagaaaa gggcaactac acgagataat gcacctgatt
     1381 cattttctaa taatacggct aatgttctac gcatctgttc tctccgtttt acttaacatc
     1441 atttcattca ttgctcctcc acgcacttgc attgggtaaa catgttccgt ttcatcgacc
     1501 aatacatcaa caaatacaag cttatcttta attgagaatg cctcagttaa ttttgcctcc
     1561 aattcagaag ggtggtcgat ttgaatccca acgtggccat aagcctctgc taatttagca
     1621 aagttaggta gagaattcat atacacctgt gaatggcggc cagagtaaat aatatcttgc
     1681 cactgtttca ccatacctaa gaaacggtta tttaagctga caatcacaat cggtgtgtcg
     1741 tattgctttg cggtggaaag ttcctggata ttcatttgga tactaccatc accggttaca
     1801 caaacaacag tggcatcagg gtgggcaaat tttaccccca tcgcagcagg taagccaaag
     1861 cccattgtgc ctgcaccgcc tgaattaatc caacgacgtg gtttatcgaa cccataatgc
     1921 aatgcagcaa acatttgatg ttgtccaaca tctgaggcaa cataagcctc cccattggtc
     1981 aacttgtgga tcattctaat cacttgttgt ggcttaatca catcactgtt ttcttcaaag
     2041 gctaagcaat tacgagcttt ccaagcatca atttgttgcc accaagcggt taaatctacc
     2101 tgattttttg caagattttc ctcacctaat aaagataaaa attcttccat tacatcctta
     2161 gcactgccta caattggaat ataagcttgt actgttttgg aaattgaggc tggatcaata
     2221 tccacgtgga tcacttttgc attcgggcaa tattttgcta agttatttgt tgtacgatca
     2281 tcaaaacgta ccccaatacc taaaatcaaa tcactttcgt gcattgcatt atttgcctca
     2341 aaagtgccgt gcatgcctaa catacctaaa tattgcttat cagaggcagg ataagcacct
     2401 aatcccatta atgaacaggt tacaggtaga tttagctttt gtgcaaactc tgtaatttct
     2461 ggcgaaccct ctgcactaat tacaccaccg cctacataaa gcactggacg ttttgctact
     2521 aatagtgctt ttaatgcttt tttaatttgc cctttatgcc cttgaactgt tgggttataa
     2581 gaacgcattg atacttcttg cggatattca tagggatatt tatttaatgg attgactaca
     2641 tctttaggaa tatcaataac taccgggcct ggtcgaccgg ttgatgcaat ataaaaggct
     2701 tttttgataa tttcaggaat ttcttctgta ttttttacta agaaactgtg ttttacaacc
     2761 ggacgagaaa tgccgatcat atcactttct tggaatgcat ctgtcccaat taaacttgat
     2821 ggaacttggc ccgacagtat tactaacgga acagagtcgg tataagcagt taaaatacca
     2881 gtaattgtat tcgttgctcc cggacctgaa gtcactagca cacagccgac tttacctgtt
     2941 gaacgggcat agccatcagc catatgtaca gcaccttgct cgtgtcgaac taaaacgtga
     3001 ttcaatccaa gtgtatgaat tgcatcataa atatcgagta cagagccacc cggatagccg
     3061 aaaacgtatt ctacgccttc atcctttaag gactgtacaa tcatttctgc accagaaagt
     3121 tttttcattg aatcctccaa caaaatagca ttttcttctc taagatggtt ggattttgca
     3181 gtaaaatttt attgatgtct agttcttatt atgggatcaa atgctagat
//
LOCUS       DANMBQ010000198         3216 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.201, whole genome shotgun sequence.
ACCESSION   DANMBQ010000198 DANMBQ010000000
VERSION     DANMBQ010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3216
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.201"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(389..1606)
                     /locus_tag="PXE92_002570"
     CDS             complement(389..1606)
                     /locus_tag="PXE92_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HDL5761754.1"
                     /translation="MDRFPKSDKLAQVRYDIRGPIHKEALRLEEEGHKILKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIVQYYQSKGMRGMDVNDVYIGN
                     GVSELITMSMQALLNDGDEILIPMPDYPLWTAASTLAGGKAVHYLCDEENEWFPDLED
                     IKSKITPRTKGILVINPNNPTGAVYSRQILLEIAELARQHNLIIFADEIYEKIVYDGA
                     VHHHIAALAPDVLTVTYNGLSKAYRVAGFRQGWMVLSGPKHQAKGFIEGLDMLSSMRL
                     CANTPMQHAIQTALGGYQSINEFVLPGGRLLEQRNKMHELLVQIPGISCVKAKGALYM
                     FPKIDTEMYGIKDDQKFIYDLLRQEKVLLVQGSGFNWKKPDHFRVVTLPYAHQIEEAI
                     GRLANFLKTYRQD"
     gene            1794..3098
                     /locus_tag="PXE92_002571"
     CDS             1794..3098
                     /locus_tag="PXE92_002571"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase"
                     /protein_id="HDL5761755.1"
                     /translation="MLIFHQLKQELTKSYSKVGREQGLVAIQASMPLLEANIPLLGWL
                     KTQKTSYPHFFLQYRDTDQTIATIGTLRQFYTLEAAQSFIQQHHFPLIGGLQFEGNTQ
                     FILPQFSLVKNQQNLTACFYFDSDNFEQQAVIFEQFLANFSQITELGLTDNPLVSMSA
                     TSHFEQWKANIEKAIVSIEQGDFQKVVLANAMRLHFEQPICAYSLLAQSQKTNLGCYH
                     FLWAESADVAFLGSTPERLYQRQGLHFSTEALAGTAAVTTSEVQTELNAQWLLSDPKN
                     IYENQLVVDDIENQLKDCVTEFAVSEAKIKRLHNVQHLRRQIQATLKPDTSDSDCLSK
                     IHPTAAVAGLPRQKAKGFITENEPFTRHWYAGTLGVMGNEEAEFCVTLRSALISQNSI
                     TLYAGAGIVSGSDPQSEWQEIKRKAQGMAKLLDVDLVTKGEL"
BASE COUNT          997 a          686 c          612 g          921 t
ORIGIN      
        1 ttttttaaat aagtataaag caaggaaaag aaaaggaatc gtaaccagca tacgaatgcc
       61 gaaaatgctc acacctgcca gcggttttag aaagatcgcc aaatagtaca tacagccgaa
      121 taacactgag gctgaaagag ataaaagaat gccttttaac atagtgataa gaaagtaatt
      181 attttttaat ttttcaaatc tcccctaccc ctcttttcta aagaggattg tcgagttcta
      241 aataaatgaa taatgttcgg aggtaggggc gggtccagtg cccgcccgca aattaatatc
      301 gttagcggac aggcacagga cctgtcccta ctgatattat agaacttaca accctgcttt
      361 tataaagtgg ggtaaaggga gattcgactt agtcttgacg ataggttttc aagaaattcg
      421 caaggcgacc aatcgcttct tcaatttgat gtgcataagg caaagttacc acacggaagt
      481 gatccggttt tttccagtta aaaccggaac cttgcactaa tagcactttt tcttgtcgca
      541 acaaatcgta gatgaatttt tggtcatctt taatgccgta catttcggta tcaattttcg
      601 ggaacatata taacgcccct ttcgctttta cacagctaat acccggaatt tgtaccaata
      661 attcgtgcat tttatttcgt tgttccagca aacgaccgcc cggcaacaca aattcattga
      721 tactttgata accacctaat gcggtttgaa tggcgtgttg catcggcgta ttggcacata
      781 aacgcataga agagagcata tccaaccctt caataaaacc tttggcttga tgcttcggac
      841 cgctcagcac catccagccc tgacggaaac cggcaacacg atacgccttg gataaaccgt
      901 tataagttac ggttaatacg tccggtgcaa gagcagcaat atggtgatgt accgcaccat
      961 catagacaat tttttcataa atttcgtcag caaaaataat taagttatgc tgacgggcaa
     1021 gttctgcaat ttccagcaaa atttgacggc tatacactgc tccggtcggg ttattcgggt
     1081 tgataaccaa aatcccttta gtgcgaggcg tgattttcga tttaatatct tcaagatcag
     1141 ggaaccactc attttcttca tcgcacaggt aatgcactgc tttaccaccg gctagggttg
     1201 aagctgctgt ccataacgga taatcaggca ttggaattag aatttcatcg ccatcattta
     1261 ataacgcctg catcgacatt gtaatcagtt cagatacgcc gttgccgatg taaacatcgt
     1321 ttacatccat accacgcata ccttttgatt gataatattg cacaatcgct ttgcgggcag
     1381 aatacaaacc ttttgaatca caatagcctt gtgcggttgg aagattacga atcacatcca
     1441 ctaaaatttc atcgggtgct tcaaagccaa aaggggctgg gttaccgata tttaatttta
     1501 aaattttatg cccttcttct tctaagcgaa gtgcctcttt atgaattggc ccacggatat
     1561 cgtaacgaac ctgagctaac ttatctgatt tgggaaaacg atccattgta aacttcctat
     1621 aatgtattat ctaattgtag tctcatcccg ctgttcaaaa aatcggtaat tcggaatgaa
     1681 tttgtaaaca ttactctaat ttgggaggaa aaaaaagagg aaatacgtta aaatggagac
     1741 ctttttttca atcagctaaa aacaagcggt ttctttttct gatttttttg caaatgctta
     1801 tttttcatca attaaaacaa gaacttacaa aaagttactc aaaagtggga agagagcaag
     1861 gattggtcgc cattcaagcc tctatgccgc tattggaggc aaatattccg ctactcggtt
     1921 ggttgaaaac acaaaaaaca agctaccctc acttttttct gcaatatcgt gatacagatc
     1981 agaccattgc caccattggc acacttcgcc aattttatac gctagaagct gcacaatctt
     2041 ttattcaaca acatcatttc ccgttaatcg gcgggcttca atttgaaggc aatacgcaat
     2101 ttattttgcc tcaattttca ttggtaaaaa atcagcaaaa tttaaccgct tgcttctatt
     2161 ttgatagtga taactttgaa caacaagcgg ttatttttga acaatttctt gcaaatttca
     2221 gccaaattac cgaattagga ctaacggata atccgctcgt ttcaatgagt gccaccagcc
     2281 attttgagca atggaaagcc aatattgaaa aagcgattgt ttctattgag cagggcgatt
     2341 ttcaaaaagt ggtattggca aatgcgatga gacttcattt tgagcaaccc atttgtgctt
     2401 acagcttgct ggcacaaagc caaaaaacaa atttaggttg ttaccacttt ttatgggcgg
     2461 aaagtgctga tgttgccttt cttggctcaa cccctgagcg gctatatcaa cgccaagggc
     2521 tacacttttc taccgaagcc ctcgccggca ccgctgcggt taccaccagt gaagtgcaaa
     2581 ccgaactcaa tgcacaatgg ctgttaagtg atcccaaaaa tatctatgaa aatcaattag
     2641 tggttgatga cattgaaaac caactcaaag attgcgtgac cgaatttgca gtatccgagg
     2701 caaaaattaa gcgtttgcat aatgtgcaac acctacgccg ccaaattcaa gcaacgctca
     2761 aaccggacac ctcagattca gattgcttaa gcaaaatcca cccaactgcg gcagttgcag
     2821 ggcttccccg ccaaaaagca aagggtttta ttaccgaaaa tgagcctttt acccgccatt
     2881 ggtatgcagg tacattaggc gtaatgggca acgaggaagc cgaattttgc gtaacactcc
     2941 gttctgcatt aatttcacaa aattcaatta cgctttatgc cggtgccggc attgtgtcag
     3001 gctcagatcc acaatcggaa tggcaagaaa ttaaacgtaa ggcacaagga atggcaaaac
     3061 tgttggatgt tgatttagta acaaaagggg aactgtaagc taggctttca gaacttaatc
     3121 tcttaattat ttctttctat attttcattt ccaacttccc aacaaaatat attattgcca
     3181 ccaaattagt agtgaatatt ccataattaa aaaatt
//
LOCUS       DANMBQ010000199         3202 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.202, whole genome shotgun sequence.
ACCESSION   DANMBQ010000199 DANMBQ010000000
VERSION     DANMBQ010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3202)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3202)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3202
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.202"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            9..449
                     /locus_tag="PXE92_002572"
     CDS             9..449
                     /locus_tag="PXE92_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5761756.1"
                     /translation="MSINISPLASKNLTEWKLLWQQYLDFYQVNLADDIIQSTWQKVS
                     ESENVKGFGAFVDNRMVGFVHIVIHPNTWNLTECCYLEDLFVLAEYRNQGIGKELIEY
                     IYRYAQEKGYNRVYWVTDKNNHQAQQLYNKLANDSGIIQYRKNF"
     gene            479..1546
                     /gene="hisC"
                     /locus_tag="PXE92_002573"
     CDS             479..1546
                     /gene="hisC"
                     /locus_tag="PXE92_002573"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL5761757.1"
                     /translation="MTISQLSRKNIQALTPYQSARRLGGSGDVWLNANEYALSPNFDL
                     TDRTFNRYPEPQPQAVIEGYARYAGVAPENVLVSRGGDESIELIIRAFCEANDSILYC
                     PPTYGMYAVSADTCGIATKTVPLTADFQLDLAQIKANLEGVKVVFVCSPNNPTGNLIK
                     RSDLFELLQITAGKAIVVVDEAYIEFCPEARLVSELANFPHLAIIRTLSKAFALAGLR
                     CGFTLANAELIGVLQKVIAPYPLPVPVSDIAAQALSPQGIEQMKTRVAEVITLRAELQ
                     KNLENLPLVEQVFDSEANYLLFKCQDGQKVFKALWEQGIILRDQHKALGLQNCIRITV
                     GAREENLRVVEAITALSQFQR"
     gene            1731..2819
                     /gene="hisB"
                     /locus_tag="PXE92_002574"
     CDS             1731..2819
                     /gene="hisB"
                     /locus_tag="PXE92_002574"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HDL5761758.1"
                     /translation="MQPTLFIDRDGTLIDEPKTDFQIDSLEKLKFEKNVIPALLKLKG
                     KYRFVMVTNQDGLGTSSFPQADFDKPHNAMMALFNSQGIEFDDVLICPHKPEDGCDCR
                     KPHTKLLQKYIDRQLFDPANSFVIGDRATDVQLAENLGIRALQYHPEKLNWDLIAEKL
                     LGEAVTNIGERPKRFAEVIRKTKETDIKVQVWLDETGNNEISTGVGFFDHMLDQIATH
                     GGFRMNITTKGDLWIDEHHTVEDTALALGTALKQAIGDKRGIARFGFVLPMDESRAEC
                     AMDLSGRPFIKFKADFKRDKVGDFSTELTEHFFQSIAFTMLATLHIKAKGDNDHHKIE
                     SLFKVFGRTLRQCIRIEGNELPSSKGVL"
     gene            2914..3198
                     /locus_tag="PXE92_002575"
     CDS             2914..3198
                     /locus_tag="PXE92_002575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761759.1"
                     /translation="MIREVIDFIKNNKWYVLLVVLLLGLYFYQFHGGLSSDSEKWDHF
                     GSYIGGIFSAVTLLSVLHGMQLERKRFKEQKEEFENDKRVLEKRRRKEDF"
BASE COUNT          962 a          691 c          745 g          804 t
ORIGIN      
        1 gaaaaaatat gagtattaat atttcgccgt tagcctccaa aaatctcact gaatggaaac
       61 tattgtggca acaatattta gatttttatc aagtgaattt agcagatgat attattcaat
      121 caacttggca gaaagtttca gagagtgaaa atgtaaaggg atttggggct tttgttgata
      181 acagaatggt tggttttgtt catattgtga ttcacccaaa tacttggaat ttaactgaat
      241 gctgttattt ggaagattta tttgttttag ctgaatatcg caaccaaggc ataggaaaag
      301 aattaattga atatatttat cgatatgcac aggaaaaagg atataaccga gtatattggg
      361 taacagataa aaacaatcat caagcacaac agctttataa taaattagct aatgatagcg
      421 gtattattca atatcgaaaa aatttctaaa ctatgtataa attatacagg aacacaatat
      481 gacaatttca caactttccc gtaaaaacat tcaagctctc accccttacc aatcggcacg
      541 gcgtttgggg ggtagtggcg atgtgtggct gaatgccaat gaatatgccc tttcgccaaa
      601 ctttgattta accgaccgca cttttaaccg ctaccctgaa cctcaaccgc aggcggtgat
      661 tgaaggttac gcccgatatg caggcgttgc acctgaaaac gtgctggttt cccgtggggg
      721 cgatgagagc attgagctga ttatccgagc cttttgcgag gcaaacgaca gcattctcta
      781 ctgcccacca acctacggaa tgtacgccgt gagtgccgac acctgtggca ttgcgaccaa
      841 aactgtgcct ttaaccgccg atttccagtt ggatttagcc caaatcaaag ctaacctcga
      901 gggcgtgaaa gtggtgtttg tgtgcagccc gaacaacccg acaggcaact taatcaagcg
      961 gtcggatttg ttcgaacttt tgcaaatcac cgcaggcaaa gcgattgtgg tggtggacga
     1021 agcctacatc gaattttgcc ctgaagctcg cttggtaagc gagctggcga atttcccaca
     1081 tttggcgatt atccgcaccc tatccaaagc ctttgccttg gcgggtttgc gttgtggctt
     1141 taccttggca aacgctgagc tgatcggcgt gttacaaaaa gtgattgccc cgtatccgct
     1201 gcctgtgcct gtttccgaca tcgccgccca agccctctcc ccacaaggca ttgagcagat
     1261 gaaaacccgt gtggcggaag tcatcaccct gcgtgccgaa ttgcaaaaaa atctggaaaa
     1321 cttaccgctt gtagaacaag tttttgacag cgaagccaac tacctcctat tcaaatgcca
     1381 agacggacaa aaagtcttca aagcactttg ggagcaaggc attattttgc gtgaccaaca
     1441 caaagcgtta ggattgcaaa attgcattcg gattacggtg ggggcgagag aggagaattt
     1501 gagggtggtt gaggcgatta cagcactgag ccaatttcag agatagaatt taacgagcag
     1561 tattttaaga gacatttata gcctagcacg gcatagccgt actaggttac gcataagtca
     1621 gtccctttgg gactgaatac agagaggcaa agtctctcac taatgcttaa ccccatatgc
     1681 cttggcgtgt ggggagagta atgaataaga tacagataca ggagaaacca atgcaaccca
     1741 ccctttttat cgaccgtgac ggcacgttaa ttgatgagcc aaaaaccgat tttcaaatcg
     1801 acagcttgga aaagctgaaa ttcgagaaaa acgtgattcc tgccctgctc aaactcaagg
     1861 gcaaataccg ctttgtgatg gttacgaacc aagacggctt aggcacgagt tcgttcccac
     1921 aggcagattt cgacaaaccg cacaatgcaa tgatggcgtt gttcaactcg caagggattg
     1981 aatttgatga tgtgctgatt tgtccacaca agcccgaaga cggttgcgat tgccgcaaac
     2041 cgcacaccaa actgctacaa aaatatatcg accgccaact gttcgaccca gccaacagct
     2101 ttgtgattgg cgaccgtgct accgatgtgc aactggcgga aaaccttggc attcgggcgt
     2161 tgcaatatca ccctgaaaaa ctgaactggg atttgattgc tgaaaaacta ctgggcgaag
     2221 ccgtcaccaa cattggcgag cgaccaaagc gctttgccga agttatccgt aaaaccaaag
     2281 agaccgacat caaagtgcaa gtgtggctgg acgaaacagg caacaacgaa atcagcaccg
     2341 gcgtgggctt tttcgaccat atgcttgacc aaattgccac ccacggcggt tttagaatga
     2401 acatcaccac caaaggcgac ttgtggattg acgaacatca cacggtggaa gacaccgccc
     2461 tcgccctcgg caccgcatta aaacaagcga ttggcgacaa acgcggcatc gcccgtttcg
     2521 gcttcgtgtt gccgatggac gaaagccgtg cggaatgtgc gatggactta tcaggcagac
     2581 ctttcatcaa gttcaaagcg gatttcaaac gcgacaaagt gggcgatttc agcaccgagc
     2641 tcaccgaaca cttcttccaa tccatcgcct tcacgatgct cgccaccctg cacatcaagg
     2701 caaaaggcga caacgaccac cacaaaatcg aaagcctgtt caaagtcttc ggcagaacac
     2761 tcagacagtg cattcgtatt gaagggaatg aactaccaag cagtaaaggt gtattataat
     2821 caccgtaggg gcgggtttta acccgcccga aagtgcggtt gaaatttgca aagtttttgg
     2881 ggattttgac cgcttgttat aaaggatata ttgatgatta gagaagttat tgactttata
     2941 aagaataata aatggtatgt tctgttagtt gtattgttat taggattata tttttatcag
     3001 tttcacgggg gattatcctc agatagtgaa aaatgggatc attttggtag ctatattggt
     3061 ggtatatttt ctgctgttac tttattgagt gttttgcatg gaatgcagtt ggaacgtaaa
     3121 agatttaagg agcaaaaaga agaatttgaa aatgacaaaa gagtattaga aaagagaaga
     3181 agaaaagaag atttttagcg ta
//
LOCUS       DANMBQ010000200         3181 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.203, whole genome shotgun sequence.
ACCESSION   DANMBQ010000200 DANMBQ010000000
VERSION     DANMBQ010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3181
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.203"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(130..339)
                     /locus_tag="PXE92_002576"
     CDS             complement(130..339)
                     /locus_tag="PXE92_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761760.1"
                     /translation="MIEQGFSPVVIAERLGHESISITLNYAHLYLGRDKTEKKESVIG
                     AIKKHKRKIDKTIEQSHSMSNDMEL"
     gene            472..612
                     /locus_tag="PXE92_002577"
                     /pseudo
     CDS             472..612
                     /locus_tag="PXE92_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011497995.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            596..1663
                     /locus_tag="PXE92_002578"
     CDS             596..1663
                     /locus_tag="PXE92_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL5761761.1"
                     /translation="MNKRLSDEEANTLGITAGDTPHDTLKTLVGALKDTREEARKANE
                     RGDRFEQEVLRLQAREAEVDSRIAGEVESRVESRLAAAWDGFNRQIEELKGRVQSGNQ
                     QQKEAEAIPVGGASSGFGTESAGQTGNVDNNGIRWVDPDDMVVTDEQGKPVTGNYSGK
                     TKTGFPSPFKAEGESSNTGTALNNNAGTENMTGNTQIQQIKRTPYYTIPENSTLMGST
                     AMTALLGRVPIQGAVTDPFPFKVLIGRENLIANGIDLPDVEGAIVSGTSTGDWTLSCV
                     RSEVTSITFVFADGRISNGRASGESRAVKRNQASNLTPFCLTVSLSGFNDIPHSDGNP
                     GFLTMSAVDYVDVYLMSHLAR"
     gene            complement(1747..2010)
                     /locus_tag="PXE92_002579"
     CDS             complement(1747..2010)
                     /locus_tag="PXE92_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme-like superfamily protein"
                     /protein_id="HDL5761762.1"
                     /translation="MRPVTRNNRGTSFDPRHNKYINTLATALLARWHIEQFSERNIPV
                     NDENLYMAHNIGLDGFHRALLGQSTRKDIENMRKNGMKPWMSI"
     gene            2219..2683
                     /locus_tag="PXE92_002580"
     CDS             2219..2683
                     /locus_tag="PXE92_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArdC family protein"
                     /protein_id="HDL5761763.1"
                     /translation="MMNTQQPKFDLYQHITDRIIAALEQGTAPWLKPWSHPECNMALP
                     RNAVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRP
                     NEREKLDEEGNIVYDEEGNPEMEQHFFIAKHNLFNLDQCENLPAELYDPVIP"
     gene            2787..>3181
                     /locus_tag="PXE92_002581"
     CDS             2787..>3181
                     /locus_tag="PXE92_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL5761764.1"
                     /translation="MRSMFKKFFGKNKSQSAVKSDTIFSIEQDNEGWLYPEKASQLLN
                     TELRQKYLGLLWQQVSMNRQMFEVLYQQPIERYAEMVQLLPASESHHHSHIGGMLDHG
                     LEVIAFSAKVRQSYILPPNVAPEEQSKQR"
BASE COUNT          991 a          606 c          663 g          921 t
ORIGIN      
        1 catttcaatc tattcagtag acattatagc atattttacc tgttttttct atatttttgg
       61 ctaaaaacat gatgctaatt gcttcaaaaa aatggagagt atcaaattta taatactctc
      121 catgtatctc tatagctcca tatcgttact catactatga ctctgctcaa ttgttttatc
      181 tattttcctt ttatgtttct taattgctcc aataactgat tcctttttct ctgttttatc
      241 cctaccaaga tataaatgtg catagtttaa ggttattgag atactttcat gacctaatct
      301 ttctgcaatt accacaggag aaaatccttg ctctatcaaa taagcaacat gagaatgtct
      361 taaatcatgt gtagaagatc agacttgatc tgacaattca ctctaaaaag tgagagtttc
      421 ccgtttagaa tatgagtgtc aaaaatcaat ctaaacaaaa aggaaactct catgttttat
      481 tctaacaacc ctctcattaa acacaagacc ggtttattaa atttagcaga agaactgggt
      541 aatatttctc aagcctgcaa agtaatggga atgagccgag atacattcta tcgttatcaa
      601 caagcggtta agtgatgagg aggcgaatac attaggtatt actgcaggag atacgcctca
      661 cgatacatta aaaacgttgg taggagcatt aaaagatact cgtgaagaag ctcgtaaagc
      721 aaatgagcgt ggtgatcgct ttgagcaaga ggtattacgc ttacaagcaa gagaagccga
      781 agtggattct cgtattgcgg gtgaagtaga aagtcgtgta gaaagccgtt tggctgctgc
      841 ttgggatgga tttaatcgcc aaatcgaaga actgaaaggt cgggttcaaa gtggtaatca
      901 gcagcagaaa gaagcagagg caatccctgt aggaggggct tcttctggct ttgggactga
      961 atcagcagga caaacaggga atgtagataa caatggcatt cgctgggtcg atcctgatga
     1021 tatggtggta accgatgaac aaggtaaacc ggttacaggc aattattccg ggaaaacaaa
     1081 aaccggcttt ccaagccctt ttaaagcaga gggggaaagt tcaaatactg ggacagcatt
     1141 aaataataat gctgggacag aaaatatgac tggtaatact cagatacagc aaataaagcg
     1201 tacaccttat tacactattc ccgaaaattc gactttaatg ggttctactg cgatgacggc
     1261 attgttaggc cgtgtaccta ttcaaggtgc tgtgacagat ccgtttccgt ttaaagtatt
     1321 aatcgggcga gaaaatttaa ttgccaatgg cattgattta cctgatgttg agggggcgat
     1381 tgtatccggt acatcaaccg gagattggac gctatcttgc gttcgttctg aggtaacgag
     1441 cattaccttt gtgtttgcag acggtcgtat ttcgaatggg cgagcgagtg gagaaagcag
     1501 agctgtgaaa cgaaatcaag caagtaattt aacaccattt tgtttaaccg tctccttatc
     1561 gggctttaac gatattcctc attctgatgg gaatcccggt ttcttaacga tgagtgcggt
     1621 agattatgtt gatgtatatt taatgtctca tttagcacgt tgaagtttga tacaccacgg
     1681 atgaaagagt gcaaaatttc ggtactctct ccggaacaaa ctggattagg tcatttgaaa
     1741 acagagctaa atggacatcc aaggtttcat cccattctta cgcatattct caatgtcttt
     1801 acgagtagat tgccctaata acgctcgatg gaaaccatct aagccaatat tgtgagccat
     1861 atagagattt tcatcattga ctgggatatt acgctcagag aattgctcaa tatgccaacg
     1921 tgccaataat gcggttgcca atgtattgat gtatttattg tgacgagggt caaaactggt
     1981 tccacgatta tttctcgtta ccggtctcat cccaatctct cttcctcgat aggtatctgc
     2041 taatcaatgc cgatgaacag actattcgta attactacgc cataggcagt tctgttggct
     2101 ttgatgattc tagaaaaatt gtggccattg aaattttata aactacccat cggggaaaca
     2161 agttccccat agggtaaccg tgtttcccca tttttttacc caaactttgg agaaacacat
     2221 gatgaacact caacaaccta aatttgattt ataccaacat attactgata gaatcattgc
     2281 tgcattggaa caaggtacag ctccgtggtt aaaaccgtgg agccatccgg aatgcaatat
     2341 ggcattacct cgcaatgcgg tttctaaccg tctgtattcc ggtatcaata cgttattgct
     2401 ttggattgct accgctgaac acggctacaa acagtgtaag tggattacgg cgaaaaaagc
     2461 caatgaactc ggcggatata tccgtaaagg ggaaaaagct actgttgtga tgaactaccg
     2521 tcctaatgag agagaaaaac tcgatgagga gggaaatatt gtgtatgacg aggaaggaaa
     2581 tccggaaatg gaacaacact ttttcattgc taagcacaat ctgttcaatt tagaccagtg
     2641 tgaaaattta ccggcggaac tgtacgatcc tgtaatcccc taagggggat aagagtaacc
     2701 tttccaaggg gaaaggtctt acccaaaagg gcaaagggct aaacggcttt cattcaatac
     2761 agcattcata ttttcggtct cttccaatgc gttcaatgtt caaaaaattt tttggtaaaa
     2821 ataaatctca aagtgcggtc aaatccgata ctattttttc tattgagcaa gataatgaag
     2881 ggtggttata cccggaaaaa gcctctcaat tacttaatac agaattacga caaaaatatc
     2941 ttgggctact ttggcaacag gtatcaatga accgtcaaat gtttgaggta ctttatcagc
     3001 agccaataga acgttacgct gagatggttc aactattacc agcttctgaa tcacaccatc
     3061 attcacatat cggtggaatg cttgatcacg gtttagaagt tattgctttt tcagctaaag
     3121 ttcgtcaaag ctatattttg cccccgaatg tagctcccga agaacaatca aagcaacgag
     3181 a
//
LOCUS       DANMBQ010000201         3117 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.204, whole genome shotgun sequence.
ACCESSION   DANMBQ010000201 DANMBQ010000000
VERSION     DANMBQ010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3117
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.204"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            233..1351
                     /locus_tag="PXE92_002582"
     CDS             233..1351
                     /locus_tag="PXE92_002582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL5761765.1"
                     /translation="MKKTLVALAVTAFAASASATTVYDAEGSKVDFDGSLRIVLDRTN
                     SKELDNHNVVKTKKDAHTGIRNTGSRFGVRVKHDLAQDFYALGRVEFRFNKNTSDDGF
                     GDLYTKRAYVGLGSKQYGELTFGRQVTIADDLSQSVDYNYGINPKGDYIQTDGNQVIR
                     YNYRGVENLHVSANYNFAQDRKDGKVLANKLQNAYGIGALYTVDNWDLRAAYGHTNYK
                     TATDSTKHRKDGVLGSVGYKFGDLKLSVDTGYSREKGLAVTDDNGVTTFYNGVKSNAF
                     YVSPNFEYQVVPASKVYGNYLYERVKSKSNGSTYAAGKEKTHGFLLGVDYQFHKQVVA
                     FVEGSYTRTKDYDKVTNGYEYSGKSTNKAIGVGMRVYW"
     gene            complement(1504..2868)
                     /gene="glmU"
                     /locus_tag="PXE92_002583"
     CDS             complement(1504..2868)
                     /gene="glmU"
                     /locus_tag="PXE92_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDL5761766.1"
                     /translation="MTQLSVVILAAGKGTRMYSDLPKVLHPVAGKPMVKHVIDTAKQL
                     DAQQIHLIYGHGADLLKARLSEEPVNWVFQAEQLGTGHAMQQAAPFFADDENIVMLYG
                     DAPLITKATLERLIAAKPENGIALLTVELENPTGYGRIIRENGSVVAIVEQKDANEAQ
                     LKVKEVNTGVMVASGASFKKWLKNLNNNNAQGEYYITDVIAMANQEGFKVQAVQATEF
                     MEVEGANNRLQLAALERFYQKREAEKLLLAGVTIIDPSRFDLRGTVTHGKDVQIDVNV
                     ILEGEIKLGNNVKIGAGCVLKNCEIGDNVEIKPYSVIEDSIVGAKSAIGPFSRLRPGA
                     ELAEETHIGNFVEIKKATIGKGSKVNHLTYVGDAEIGKECNIGAGVITCNYDGANKFK
                     TIIGDNVFVGSDSQLIAPVTIASGSTIGAGATVTKDIAENELVISRVPQRHIQGWQRP
                     TKKK"
BASE COUNT          902 a          554 c          601 g         1060 t
ORIGIN      
        1 agtggatttt ctccaaatga aataatgtaa gtataaccat ttgattttaa aagaaaaaat
       61 gccgtctttg ttttggggtt tgaactattg acattgagtt ttctttttgc aattattctg
      121 gcgaaaacaa tgttaggcgt tttgctgata cattgtatct tggataatta ctcttacacc
      181 ttaatgaggg taattactta tcatataaca tataaaatct aaggtgaaaa ttatgaaaaa
      241 aacattagtt gcattagcag taaccgcgtt cgcagcgtca gcatcagcaa ccaccgttta
      301 cgatgcagaa ggttcaaaag tagattttga tggttcttta cgtattgttc ttgatagaac
      361 aaattctaaa gagctagaca atcataatgt tgttaaaact aaaaaagatg cacacacagg
      421 aatccgtaac actggttcac gttttggtgt aagagtaaaa catgatttag ctcaagattt
      481 ctatgcatta ggtcgtgttg agttccgttt taacaaaaat accagtgatg atggttttgg
      541 tgatttatat actaaacgtg cttatgttgg tttaggtagt aagcaatatg gtgaattaac
      601 ttttggtcgt caagtaacga ttgctgatga tttaagtcaa tcagtagatt acaactacgg
      661 tattaatcca aaaggtgatt atattcaaac cgatggtaac caagttattc gttataacta
      721 ccgtggtgtt gaaaacttac atgtaagtgc aaactataac tttgcacaag atcgtaaaga
      781 tggtaaagta ttagcaaata aacttcaaaa tgcatacggc attggtgcat tatacactgt
      841 agataactgg gatttacgtg cagcttatgg tcatacaaac tacaaaacag ctactgatag
      901 cactaagcac cgtaaagatg gtgtattagg ttctgttggt tataaatttg gtgacttaaa
      961 attaagtgtt gatacaggtt attctcgtga gaagggttta gctgttacgg atgataatgg
     1021 tgtaactaca ttctataatg gtgttaaatc aaacgctttc tatgtatctc caaactttga
     1081 atatcaagta gtgcctgcat ctaaagtata tggtaactac ttatatgagc gtgtgaaatc
     1141 taaatcaaat ggttctacat atgctgctgg taaagaaaaa actcatggtt tcttacttgg
     1201 tgttgattac caattccata aacaagtagt tgcttttgtt gagggttctt atactcgtac
     1261 taaagactat gataaagtaa ctaatggtta tgaatactca ggcaaatcaa ctaacaaagc
     1321 tatcggtgtt ggtatgcgtg tatactggta atcaattgat tttctaaatt gataaacccc
     1381 taacaatatt tattgttagg ggttttgttt taaatatatt gttcattatc ctttttaaag
     1441 tgtatggctt tgctgttatt ggcaaagcca atttttaaat ataataactt ttgaccactg
     1501 gcactatttc tttttagtcg ggcgttgcca gccttgaata tggcgttgtg gtacacggct
     1561 aattaccagt tcattttccg caatgtcttt agtgactgtt gcaccggcac caatggttga
     1621 accgctggca atcgtgaccg gggcaatgag ttggctgtct gagccgacaa atacgttatc
     1681 gccaataatg gttttgaatt tattcgcacc atcatagtta caagtgatta cacctgctcc
     1741 gatgttacat tctttgccga tttccgcatc gcctacataa gtgagatgat ttacttttga
     1801 acctttgccg atggtagctt ttttgatttc cacaaagtta ccgatatggg tttcttccgc
     1861 taattctgcc cccgggcgta agcgagagaa tggaccgata gcggattttg ccccgacaat
     1921 cgaatcttca atcacagaat aaggtttaat ttcaacatta tcgccaattt cgcagttttt
     1981 cagtacgcag cctgcaccaa tttttacatt gttaccgagt ttgatttcac cttctagaat
     2041 gacattcaca tcgatctgaa catcttttcc gtgggtgaca gtgccacgaa gatcaaaacg
     2101 gcttgggtcg ataatagtta caccagccaa taacagtttt tccgcctcac gtttttggta
     2161 gaaccgttca agtgcagcaa gttgcaaacg gttgtttgcc ccttctactt ccataaattc
     2221 agttgcctga accgcttgta ctttaaagcc ttcttggttt gccattgcga tcacatcagt
     2281 gatgtaatat tcaccttgag cattgttgtt atttaggttt ttcaaccatt ttttgaagct
     2341 cgcaccgctt gctaccatca cgccggtatt cacttctttg actttaagct gtgcttcatt
     2401 ggcatctttt tgctcaacaa tcgctaccac agaaccattt tcacgaataa ttcgtccgta
     2461 gcctgtcggg ttttccaatt caacggttag taatgcaata ccattttccg gtttggctgc
     2521 gattaaacgc tctaaagtgg cttttgtgat taggggggca tcaccataaa gcattacaat
     2581 gttttcatca tcagcgaaaa aaggagctgc ttgttgcatt gcatgtcctg tgcctaattg
     2641 ttcggcttgg aatacccagt ttacaggctc ttcgcttaaa cgtgctttta acagatcggc
     2701 accgtgtccg taaattaaat gaatttgctg ggcatctagc tgtttggcag tatcaataac
     2761 gtgttttacc atgggtttac cggcaactgg gtgtaacact ttgggtaaat ctgaatacat
     2821 acgagtgcct ttaccggcag ctaaaataac aacgctcagt tgagtcatat agaatcctta
     2881 tttgactaaa tagatgaagg cttatagtaa cgtgtaaatt gctataagtg atatttttgt
     2941 aatattttaa cctttttata agtggatttc atcgacaagc aaaagaaatt tgtctgtttg
     3001 ttatcttttt ctattatgtc gattcttatc ttgtggaaaa ctggtataaa taggtagcac
     3061 ttatttgtgc tatctctcta caatagtgta tatctttgct aaaatattaa attaatt
//
LOCUS       DANMBQ010000202         3093 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.205, whole genome shotgun sequence.
ACCESSION   DANMBQ010000202 DANMBQ010000000
VERSION     DANMBQ010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3093
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.205"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..736)
                     /locus_tag="PXE92_002584"
     CDS             complement(<1..736)
                     /locus_tag="PXE92_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5761767.1"
                     /translation="MLIEWRNQIVGDKIKAVTWNNYVRHLKSLYNFGLSQGVLNINQN
                     PFNQLFIRESKRRKKTYSTEQLHKIDHILNNNILLPDFLKPSWFILAIIMTLRCTGIR
                     RGQLVKLKIGDVNLSNRTIYISPEINKNHDYHIVPISDSLYLHIERLITELKIRKQTD
                     NCQLFNLNLFSRCSRRRGQPMSQNQLTHIFRHISDLVGFTSSPHRFRHTVATQLMKKP
                     ENVYVVQKLLGHKDISVTLGYIEHDVE"
     gene            complement(892..2871)
                     /locus_tag="PXE92_002585"
     CDS             complement(892..2871)
                     /locus_tag="PXE92_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL5761768.1"
                     /translation="MQSIFKKIFGKHTSQSAVKSDTVFSIEQDDDGWLYPQNATQLLN
                     TELRQKYLGLLWQQVSMNRQMFETFYQQPIERYAEMVQLLPASESHHHSHIGGMLDHG
                     LEVIAFSAKARQSYILPPNVAPEEQSKQRDAWTAAAIYLALVHDIGKVVVDIEITLKD
                     GSRWFAWNGEPPEPYKFKYIKGRDYHLHLVIGSFFANQIIPKSAFDWLAQYPEVISSL
                     MYAMSGHNDKAGLLSEIVQKADQYSVTLALGGDVNKLVQRPVNSLSKQLVLALRYLLE
                     QKIKLNTPKGPADGWFTEEGLWLVSKTAADNIRTYLLGQGISVPKDNPKLFDEMQSLG
                     IVEESPSGGAIWSCRIQADSGWTPANVFTLLRIKPEVAWENINDRPNYFSGKVKIVEQ
                     IMEDSNMENHPPLVDESTKLVTLENVQPETIITSKEVEISQVEASSDNAPFSEIIIND
                     ENDLTSFVLDMFAPTESSEPSLADISIGKGQEIATMPSKQEVQDKPTTKKLNVTQSAV
                     ETPETLTLSELQSQNKENSITGDNFVNWLKSGIATNKFAINKPTAKLHIVEDHLFLVT
                     PVIFEMYLQESGLPYDKEMINSLQYDFQGLGIHLPKNTTINGKPDTINFWKCDVIGPR
                     KTSSLTGYLIKNTHLFFGDKTLLNNHCLTLQKEET"
BASE COUNT          898 a          582 c          576 g         1037 t
ORIGIN      
        1 tttccacatc gtgctcaata taacctagtg ttacgctgat atccttatgc cctagaagtt
       61 tctgaaccac ataaacattt tcgggcttct tcattaattg agttgcaacc gtatgtcgaa
      121 atctatgtgg tgatgaagta aaaccgacca agtcagaaat atgccgaaat atatgcgtaa
      181 gctgattttg gctcattggc tgtcctcttc ttcgagagca tcgagaaaat aaattgagat
      241 tgaacaattg gcaattatct gtttgttttc tgatttttaa ctctgtaata agcctttcta
      301 tatgaagata aagtgaatct gaaatcggta cgatatggta atcatgattt ttattgattt
      361 ctggcgaaat ataaatcgtc ctgttggaaa gatttacatc accaattttc agtttcacta
      421 attgtcctcg ccgaatgcct gtacatctca atgtcataat aatcgcaaga ataaaccaac
      481 ttggttttag aaaatcaggt aatagaatgt tattattgag tatgtggtct attttatgta
      541 attgttcggt tgaataagtt ttctttcttc tttttgattc acgaataaat aactgattaa
      601 atggattttg atttatattg agtacccctt gcgatagacc aaagttatat aacgatttta
      661 aatgtctgac ataattattc catgttacag ctttgatttt atcgccaaca atttgattac
      721 gccattcaat tagcatatca gtggtaatct catttgcatt taactttggg taacgtcttt
      781 tgataattcg gattacatta ttatagctcc gcttagtatc agggcgaaga tagtaacgat
      841 agaaaaaaaa atcggtctag tagcgaatca aaagagatag atgtcgtcat tttaagtttc
      901 ctctttctgt aaagttaaac agtgattatt taatagtgtc ttatccccaa agaagagatg
      961 tgtatttttt atcaaatatc cagttaaaga ggaagtcttt ctcggaccaa ttacatcaca
     1021 tttccaaaaa ttgatggtat ctggcttacc gtttattgtc gtattcttag gtaaatggat
     1081 tcctagccct tggaaatcat actgaagact atttatcatt tccttatcat aaggcagacc
     1141 actctcctgc aaatacattt caaaaataac gggggtaact aaaaacaggt ggtcttcaac
     1201 aatatggagc ttggcagtag gcttgttaat tgcaaatttg ttggtcgcaa tacctgattt
     1261 gagccaattt acaaagttat ctcctgtaat tgagttctcc ttattctgtg actgtagctc
     1321 tgatagtgtt aatgtttcgg gcgtttctac tgcactttgt gttacgttga gctttttagt
     1381 ggtaggttta tcctgtactt cttgtttgga tggcatcgtt gcaatttcct gtcccttacc
     1441 aattgaaata tcagcaaggc ttggctcaga gctttccgta ggtgcaaaca tatccagcac
     1501 aaaagaggtt aaatcatttt catcatttat gatgatttct gagaacggtg cattatctga
     1561 gcttgcctct acctgagata tttcaacttc cttagaggta ataatagtct ctggttgaac
     1621 attctctaat gtaacaagtt tagtgctttc atcaactaat ggaggatgat tttccatatt
     1681 gctatcttcc attatctgct cgactatttt aactttcccg gaaaaataat ttgggcgatc
     1741 attaatattc tcccaagcca cttcaggttt aattctcaat aatgtaaaga cgtttgccgg
     1801 tgtccaacct gaatcagctt gaatacggca actccaaatc gccccaccag aaggagattc
     1861 ttctacgata ccgagagatt gcatttcatc aaataacttt ggattatcct taggcacgga
     1921 aatcccctgc cctagtaagt aagttcgtat attatcagcg gcagttttgc taacaagcca
     1981 caatccttcc tcggtaaacc aaccgtctgc agggcctttc ggagtattta acttgatttt
     2041 ctgttccagt aaataacgta gtgccaagac aagctgcttt gacagagaat tgacaggacg
     2101 ttgaaccagt ttatttacat cgccaccgag tgcgagggta acactatact gatcagcttt
     2161 ttgcacgatt tcagataaaa gcccagcttt atcattatgt ccggacattg catacatcag
     2221 agaagaaatg acttctggat actgtgccag ccaatcaaat gcagatttgg gaataatctg
     2281 atttgcaaag aagctgccta tcacaagatg aagatggtag tctcgacctt tgatgtattt
     2341 gaatttatac ggttcaggag gttctccatt ccaagcaaac caacgtgagc catctttgag
     2401 tgtgatttca atatctacta caactttgcc aatatcgtga actaatgcaa gataaattgc
     2461 tgcggcagtc caagcgtctc gctgctttga ctgttcttcg ggagccacat tcggtggcaa
     2521 aatataactc tggcgagctt tagctgaaaa agcaataact tccaaaccgt gatcgagcat
     2581 tccaccaata tgagaatgat gatgtgattc tgaagctggc aatagttgaa ccatttcagc
     2641 gtaacgttct attggttgct gataaaatgt ctcgaacatt tgacggttca ttgatacctg
     2701 ttgccaaagt agtccaagat acttttgacg taattccgta ttcagtaatt gagtagcatt
     2761 ttggggatat agccaaccat cgtcatcttg ctcaatagag aaaacagtgt cagatttgac
     2821 cgcactttga gatgtgtgtt taccaaaaat tttcttgaaa attgattgca ttgaaagaga
     2881 ccgaaaagta tcaattttgt gttaaatgaa agccgtttag ccctttgccc ttttgggcaa
     2941 gacctttccc cttggaaagg ttacctttca ccctttaggg gttatccttt gcccttaagg
     3001 actcctttat ccttttgcca tttagggtga gcttggaata tattttgtag tgtataaata
     3061 tatttctgtt aagttatcta aaaactctca aat
//
LOCUS       DANMBQ010000203         3086 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.206, whole genome shotgun sequence.
ACCESSION   DANMBQ010000203 DANMBQ010000000
VERSION     DANMBQ010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3086
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.206"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..3075
                     /locus_tag="PXE92_002586"
     CDS             <1..3075
                     /locus_tag="PXE92_002586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL5761769.1"
                     /translation="AKSVAISGASSATASNALVQFSQSLLMGKLKAQEFNSLMTQTPS
                     VIQAIAKGLGITTAELKAMVDNGEMSAEKMIEGLKKAESYVNGQYAKTTTTISGAMQN
                     LSTAAEKWVGEMDSTVGVSQKAVAVLNALNANFDTVAKTVLVAGGAFALFKGYMNVRP
                     FIESRAAIYENQKAIIAENQARQQAMAIRQQELVGLSQQTALKLEQTLQTYNQNKAEL
                     EAIAVKQQKITKEREEIAVAIQAAATRSERLALSAELQALDQKEITLGQQKIAVERQQ
                     IAAKQALKVAYAENAVAQSAMSAGMITATTTTRAMNGVLAAARAELNLLKAAALSNPL
                     MTLAMVATTAGTALWGFFESQKAAREEALRYADSLDSVRVNIEKMTKAQTDAEMVKLS
                     RSIKEQETALANLKQRQAELTREIEQGATVYEDAFAGTVRVTMSAEELAKKQEELTLV
                     TADAEKAQKTLNSSLEAQEALKAHIPIANLREEFVKLYPHIDESQIKVDGLNIAIGNF
                     TVKSPEMVIATNNIANALGGVAGEAMRAAILVANLSSMKLDANGAAIIDPKHLEKIEQ
                     IERNNAIGSAKGKDKIALQVKDALIKSGMKEGDAGYERLKAAYEQQFTLQNAPKGKGG
                     KTKAEKEAEKAAKKQQSYQNQVAEMTNRLAGLKANASDIAIFGQVSDYQEVRKLTEDI
                     AINAEKYKGYGEQGVARLKELASQLESAQQQVAISQFAYNGGEKLKAMEFELTLLGKT
                     RQEQELMQYNHELDLEAARLKIGMADENIAKLDQEIVKLKERRAEIQAQAEQARGSFK
                     QGMLDGLNNIEADVSNVAANVANITQNTFDGMADSLTNFVMTGKADFRSFANSILSDL
                     SKMIIKMMLFNAIKQGATMLFGYQGPTTTVNGNAVYGLGTWATGGYTGDGGKYTPAGI
                     VHKGEYVITKEATARLGLDYLNYLNYGKRGFSSGGGVAVPRVPSSSYQPKSAQSNISV
                     QVINNGEPVDAKVSQKQQGDQMQITVELMREIARQEANGMIQNNFRAGGVFA"
BASE COUNT         1029 a          604 c          729 g          724 t
ORIGIN      
        1 gcgaaatcag tggcgatctc tggtgcaagt tcggcaaccg cttcaaacgc cctagtgcaa
       61 ttcagccaat cgttgttaat gggtaagctc aaagcccaag aatttaactc attgatgacc
      121 caaacaccgt ctgttattca ggcgattgcc aaagggttag gaattactac tgccgaactt
      181 aaagcaatgg tggataacgg tgagatgtcg gctgaaaaaa tgattgaggg gctaaaaaaa
      241 gcagagagtt atgtaaacgg acagtacgcc aaaacaacca ctacaattag tggagcaatg
      301 caaaatcttt caactgcggc tgaaaagtgg gttggcgaaa tggatagtac cgttggtgtg
      361 tcacagaaag ccgttgccgt tctgaatgcg ttaaatgcta attttgacac ggttgctaaa
      421 acggtacttg tcgccggtgg agcctttgct ctttttaaag gctatatgaa tgtacgccca
      481 tttatcgagt caagagcggc tatttatgaa aatcaaaaag caattattgc tgaaaatcaa
      541 gcccgccaac aggcaatggc gattcgtcag caagagttag taggactgtc tcaacaaacc
      601 gctttaaaac tggaacaaac attacaaacc tacaatcaaa ataaagccga attagaggca
      661 attgcagtta aacagcagaa aattacaaaa gaacgggaag aaatcgcagt ggcaattcaa
      721 gcggctgcaa ctcgttcgga aagattagcg ttatccgccg aattacaagc cttagatcaa
      781 aaggaaatca cgctcggaca acagaaaata gcggttgaac gccagcaaat tgcagcaaag
      841 caggctctca aagtggcgta tgctgaaaat gcggttgctc aaagtgcaat gagtgcaggt
      901 atgatcacag caaccacaac aaccagagca atgaatggtg ttttagcggc tgcaagagct
      961 gaattgaatt tactgaaagc agcagcactg tctaacccat taatgacact cgcaatggtg
     1021 gctacaactg ccggtactgc cctttgggga ttttttgaaa gtcaaaaagc agctcgtgaa
     1081 gaagccctcc gctacgctga cagcttagac tctgttcgag tcaatatcga aaaaatgact
     1141 aaggctcaaa ctgatgcaga aatggttaaa ttgtctcgtt cgatcaaaga acaggaaaca
     1201 gcattagcta atctgaaaca acgccaagct gaacttacac gagaaataga gcaaggagct
     1261 acggtttatg aggatgcgtt tgccggcact gtgcgtgtta cgatgagtgc ggaagagctt
     1321 gcgaaaaaac aagaagaatt aacattagtt actgctgatg ctgaaaaagc tcaaaaaacc
     1381 ttgaattcta gcttagaggc tcaagaagcc ttaaaagctc atattccgat tgctaaccta
     1441 cgagaggaat ttgttaaatt atatcctcac attgatgaaa gccaaatcaa agttgatggc
     1501 ttaaatattg ctatcggtaa ttttaccgtc aaatcaccgg agatggttat tgctactaat
     1561 aacattgcta atgctcttgg tggcgttgcc ggagaggcta tgagagcggc tattctagtc
     1621 gctaatctgt caagtatgaa gctggatgct aacggtgctg caattatcga tcctaaacat
     1681 cttgaaaaaa tcgagcaaat tgaacgtaac aatgcgattg gttcggctaa aggtaaagat
     1741 aaaatcgcat tgcaagtaaa agacgctctg attaaatcag gtatgaaaga gggcgatgcc
     1801 ggatacgagc gactaaaagc agcatatgag caacaattta cgttgcaaaa tgcccctaag
     1861 ggcaagggtg gaaaaaccaa agccgaaaaa gaggcagaaa aagcggctaa aaagcaacaa
     1921 agttatcaaa accaagtggc ggagatgaca aatcgtttgg caggcttaaa agccaatgct
     1981 tcagatatcg cgattttcgg gcaagtctcc gactaccaag aagtgcgtaa actgactgaa
     2041 gatattgcga tcaatgccga aaaatacaaa ggctacggtg agcaaggtgt cgcaaggctt
     2101 aaagagttag ccagtcagtt agagtccgcc cagcaacaag tcgctatttc tcaatttgcc
     2161 tacaatggcg gtgagaaact caaagcaatg gagtttgaat taaccttgct cggtaaaacc
     2221 cgccaagagc aagagttaat gcagtacaac cacgaattag atcttgaagc agctcggctc
     2281 aaaatcggta tggctgatga aaatattgcg aagttagacc aggaaatcgt taagctaaaa
     2341 gaacgtcgag cggaaatcca agcacaagca gaacaagctc gtggcagctt taaacaaggt
     2401 atgttagatg gtttgaataa tatcgaagct gatgtcagca atgtagcggc aaatgttgcc
     2461 aatattactc aaaatacctt tgacggtatg gcggatagct tgactaattt tgtgatgaca
     2521 ggtaaagcgg atttccgtag ttttgctaat tccatattat ctgatcttag caaaatgatt
     2581 atcaaaatga tgttatttaa tgctatcaaa caaggtgcaa ctatgttgtt tggctaccaa
     2641 ggaccgacta caacggtaaa tggtaatgct gtttatgggt taggtacttg ggcaacaggt
     2701 ggctacaccg gcgatggtgg taaatacacc ccagcgggta tcgtccacaa aggggaatac
     2761 gtcatcacca aagaggcaac cgctcgtctt ggtttggatt acctaaacta tcttaactat
     2821 ggcaaacgag ggttttccag cggtggtggc gttgctgtgc cgagagtgcc atcctcatct
     2881 tatcaaccta aatcagctca aagtaatatc agtgttcagg tgattaataa cggagagccg
     2941 gttgatgcaa aagtcagcca gaaacagcaa ggcgatcaaa tgcaaattac cgttgagtta
     3001 atgcgtgaaa ttgcccgaca ggaggcaaac ggtatgatcc aaaacaactt cagagctgga
     3061 ggagtatttg cctaatggaa acatta
//
LOCUS       DANMBQ010000204         3080 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.207, whole genome shotgun sequence.
ACCESSION   DANMBQ010000204 DANMBQ010000000
VERSION     DANMBQ010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3080
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.207"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            150..2189
                     /gene="malQ"
                     /locus_tag="PXE92_002587"
     CDS             150..2189
                     /gene="malQ"
                     /locus_tag="PXE92_002587"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL5761770.1"
                     /translation="MSNKQNTAHYFYSPNIKEYASPSAFEKIERLLNTDNDLQKNNQI
                     LPLVKVITQPNAEQQAVEISLNFTNVAKWQIVLENGEVRNGEIKAEQSVLTLPADLPL
                     GYHQLSISTENDEESCSLIVTPPKAFQPKPLEERKKLWGAFLQLYTLRSDNNWGIGDF
                     GDLKQFLANISDYGADFVGLNPIHALFPADPDAASPYSPSFRLWQNIIYIDVSAVEAF
                     QQSEQAQQWFHTKETQQQLAELRAKDFVDYSQVAQLKLKALQFAFEHFSQSSQQQSQT
                     AFDAFIEQAGEPLKIQATFDALHHWISSEFGEKGGWTNWAEEYQSYYSPKVAEFQISQ
                     ATQIRFYMWLQFVANQQLAECNRFAQSLSMPIGFYRDLAVGVTQSGAETWADKALFVQ
                     EASIGAPPDMLAPNGQSWGLSPMHPHILQSRGYQPFIDLVRANMKHCGALRIDHILGF
                     ARMWWVANGESAKEGIYVRYPLEDLLSILALESQRHQCLVIAEALGIVPEGILDSLEQ
                     KGIFAYNVFYFEKAENAFKPLENYPYQAMTTLSTHDLPTIQGYWKGYDFELGEKFDTY
                     PSKAVLRKLKEERSYDRLNIRNAVEKVIALEPNEVGVTIKFTHQLQRYVAHTHSALFG
                     TQPEDWLNMLEPVNIPGTSTEYPNWRRKLSATTEQIFANKDIQQLLKDINEIRKG"
     gene            complement(2257..2988)
                     /locus_tag="PXE92_002588"
     CDS             complement(2257..2988)
                     /locus_tag="PXE92_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HDL5761771.1"
                     /translation="MGCSSFSTKLKQEFFSGWTTFEASWLIVFLAIQIGIFIYQPDTW
                     IATIAAITGILCVVFVGKGKISNYLFGLISVSLYAYISYTFQLYGEMMLNLLVYVPVQ
                     FIGFYFWRKNMTSENTVNNAGVEEVIAKALTAKQWVIVAITTIIGTFLYIELLKYLGS
                     ALAILDGATVVISIVAQILMVLRYREQWALWIIVNIMTISLWTAMYFQNGETSLPLLV
                     MYVMYLCNSIYGYYNWIKLHRKHQQ"
BASE COUNT         1001 a          642 c          585 g          852 t
ORIGIN      
        1 tatttaataa taaaacataa ccctttagag ttaaattaaa tttttttaac atcatatcac
       61 aaagacaaac ctgttgccta ctcttcttac tcatattaat cttcacaaga tcgttatttt
      121 aacaaataca gtaaaggaaa aaagtcataa tgtcaaacaa acaaaataca gctcactatt
      181 tttactcccc aaatattaaa gagtatgcca gcccctctgc ttttgagaaa atagagcggc
      241 ttttaaatac cgataacgat ttgcaaaaaa ataatcaaat tctaccgctt gttaaagtga
      301 ttactcagcc aaatgccgag caacaagcgg tcgaaatttc gctgaatttt acaaatgtag
      361 caaagtggca aattgtgctt gaaaatggtg aggttcggaa cggtgaaatt aaggcagagc
      421 aatcagttct aaccctgcct gccgatttgc ctttaggcta tcatcagctt tctatttcaa
      481 ctgaaaatga tgaagaatct tgctcgctga ttgtaacacc gccgaaagct ttccagccta
      541 agccattgga agaaaggaaa aagctctggg gtgcattttt acagctttat actttgcgtt
      601 ccgataacaa ctggggaatt ggcgattttg gcgatctcaa acaattcctt gccaacattt
      661 ctgattatgg tgcagatttt gtgggcttaa accctattca cgccctcttt ccggcagatc
      721 ctgatgcggc aagcccttac agcccgtcct ttcgactttg gcaaaatatt atttatattg
      781 atgtttcagc agtagaagcc tttcaacaat ctgaacaggc tcaacaatgg tttcacacca
      841 aagaaactca acagcaactt gccgaattgc gagccaaaga ttttgtcgat tacagccaag
      901 tagcgcaact gaaattaaag gctctgcagt ttgcttttga gcatttttca cagtcatctc
      961 aacaacaatc gcaaacagcg ttcgatgcct ttattgagca agcaggcgag ccattaaaaa
     1021 tccaagcaac gttcgatgct ttgcaccact ggatttcatc tgaatttggc gaaaaaggcg
     1081 gctggacaaa ctgggcggag gaatatcaaa gttactattc gcctaaagta gctgaatttc
     1141 aaatatcgca ggcaacgcag atacgttttt atatgtggtt gcaatttgtg gcaaaccagc
     1201 aattagcaga atgcaaccgg tttgctcaat cactttcaat gccgattggt ttttaccgcg
     1261 atttagccgt tggtgttact caaagcggag cggaaacttg ggcggataaa gccctatttg
     1321 tgcaagaggc gtcaatcggt gcaccacctg atatgcttgc cccgaacgga cagagctggg
     1381 gactttcgcc aatgcacccg catattctac aaagccgagg ttatcagccg tttattgatt
     1441 tagtgcgtgc taatatgaaa cattgtgggg cattgcgaat cgaccatatt ctcggcttcg
     1501 cccgtatgtg gtgggtggcg aacggtgaat cggcaaaaga agggatttat gtccgttatc
     1561 cgctcgaaga tttgctctct attttggcat tagaaagcca acgtcaccaa tgtttagtga
     1621 ttgcagaggc acttggcatt gtgcctgaag gcattttgga ctctctcgag caaaagggca
     1681 tttttgccta caatgttttt tattttgaaa aggcagaaaa cgcgtttaaa ccgctggaaa
     1741 attatcctta ccaagcgatg acaactctaa gcacccacga tttaccgact attcaaggct
     1801 attggaaagg ctatgatttt gagctaggcg aaaaatttga cacttaccca agcaaagccg
     1861 tattgagaaa gctgaaagaa gagcgttcgt acgaccgctt gaatatccgt aatgcggtgg
     1921 aaaaagtgat agcactcgag ccaaatgaag tgggagtaac aataaaattt acccaccaat
     1981 tacaacgcta tgtggctcac actcacagtg cattattcgg tacacagccc gaagattggc
     2041 tcaatatgtt agagccggtg aacattccgg gaaccagcac cgaataccct aactggagaa
     2101 gaaaattatc cgcaaccacc gagcagattt ttgcaaataa agatattcaa caactgctaa
     2161 aagatataaa cgaaattcgt aaaggataat aacaagcggt catttttagg taaattttta
     2221 caaaaaatga ccgcttgtaa tttgtattta ttcgctctat tgctgatgtt ttctgtgaag
     2281 tttaatccag ttgtaataac cgtaaataga gttacataaa tacatcacat acatcaccaa
     2341 cagcggcaag ctggtttcgc cgttttggaa gtacattgcc gtccataaag aaatggtcat
     2401 aatattcacg ataatccaca atgcccattg ctcacggtag cgaagtacca tcaaaatttg
     2461 tgccacaatc gaaataacca ctgttgcacc atctaatata gctaacgcac tgcctaaata
     2521 tttaagcaat tcaatataaa gaaatgtgcc gataatggtg gtaatggcga caatcaccca
     2581 ctgttttgcg gttaaagctt tagcaattac ctcttccaca ccagcattat ttaccgtgtt
     2641 ttcgctggtc atatttttac gccagaaata gaaaccgata aactgcaccg gcacatatac
     2701 aagtaaattc agcatcattt caccatataa ctgaaaggta taagagatat aagcataaag
     2761 cgaaacggaa attaagccga atagatagtt actgattttt cctttaccga caaataccac
     2821 gcataaaata cctgttattg ccgcaatagt tgcaatccaa gtatcgggtt gataaataaa
     2881 aataccgatt tgaatcgcta aaaaaacaat caaccaactt gcctcaaaag tagtccaacc
     2941 actaaaaaac tcttgtttta acttagttga aaaagatgaa cagcccatat ttcctccata
     3001 taaagtgaag tattcttttc aaattctaag ttatttaaat taagaaatca aaatacagag
     3061 taccttttga taaatatacg
//
LOCUS       DANMBQ010000205         3071 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.208, whole genome shotgun sequence.
ACCESSION   DANMBQ010000205 DANMBQ010000000
VERSION     DANMBQ010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3071)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3071)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3071
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.208"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..3060
                     /locus_tag="PXE92_002589"
     CDS             <1..3060
                     /locus_tag="PXE92_002589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5761772.1"
                     /translation="AKSVAISGASSATASNALVQFSQSLLMGKLKAQEFNSLMTQTPS
                     VIQAIAKGLGITTAELKAMVDNGEMSAEKMIEGLKKAESYVNGQYAKTTTTISGAMQN
                     LSTAAEKWVGEMDSTVGASQKAVAVLNALNAHFDTFAKTALVAGGAFVLFKGYMSVRP
                     FIEARAAIYENRKAIIAENQARQQTIATRQQELVVLSQQTALKLEQTLQTYNQNKAEL
                     EAIAVKQQKITKEREEIAVAIQAAATRTERLALSAELQALDQKEIALGQQKIAVERQQ
                     IATKQALKVAYAENAVAQSAMNAGMVTATTTTRAMNGVLAAARAELNLLKAAALSNPL
                     MTLAMVATTAGTALWGFFESQKAAREEALRYADSLDSVRANIEKMTKAQTDAEMVKLS
                     RSIKEQETALASLKQRQAELTREIEQGATVLDDAFGAGVRFEKSAKELAKAQEELKLV
                     TADVEKAQNTLNASLEAQEALQAHVPIANLREEFVKLYPHIDESQIKVDGLNIAIGNF
                     TVKSPEMVIAANNIANALGGVAGEAMRAAILVANLSSMKLDANGAAIIDPKHLEKIEQ
                     IERNNAIASAKGKDKIALQVKDALIKSGMKEGDAGYERLKAAYEQQFTLQNAPKRGGK
                     PKKTKAERSAESYQNQVAEMTNRLSGLKIDKEDLVKYGGISQYQEVRKLTEDIALNAE
                     KYKNYGTEGVAKLKELAAKIDSEQQLLDIEQFQVDHDKKLEAMQFELDLLGKTRTEKE
                     LLQFNNQLDLEAERLKINMTKENIALLDQKIAKIKEEYELHQKKQEETRASVMMGIKE
                     GWNNIETDVSNVAANVANITQNTFDGMADSLTNFVMTGKADFRSFANSILSDLSKMII
                     KMMLFNAIKQGATMLFGYQGPTTTVNGNAVYGLGTWATGGYTGNGGKYTPAGIVHKGE
                     YVITKEATSRLGLDYLNYLNYGRRGFASGGGVAVPRVPSSSYQPKSAQSSISVQVINN
                     GEPVDAKVSQKQQGEQTQITVELMRKIARQEANGMIQNNFRAGGVFA"
BASE COUNT         1027 a          599 c          712 g          733 t
ORIGIN      
        1 gccaaatcgg ttgctatttc cggtgcaagt tcggcaaccg cttcaaacgc cctagtgcaa
       61 ttcagccaat cgttgttaat gggtaagctc aaagcccaag aatttaactc attgatgacc
      121 caaacaccgt ctgttattca ggcgattgcc aaagggttag gcattaccac tgccgaactt
      181 aaagcaatgg tggataacgg tgagatgtct gctgaaaaaa tgattgaggg gctaaaaaaa
      241 gcagagagtt atgtaaacgg acagtacgcc aaaacaacca ctacaattag tggagcaatg
      301 caaaatcttt caactgcggc tgaaaagtgg gttggcgaaa tggatagtac cgttggtgcg
      361 tcacagaaag ccgttgccgt tctgaatgcg ttaaatgctc attttgatac gttcgctaaa
      421 acagcacttg tcgcaggtgg tgcatttgtg cttttcaaag gctatatgag tgtacgccca
      481 tttatcgagg ctagagcggc gatttatgag aatcgaaaag caattattgc ggaaaatcag
      541 gctcgccaac aaacgatagc tactcgtcag caggaattgg ttgtactctc tcaacaaacc
      601 gccttaaaac tggaacaaac attacaaacc tacaatcaaa ataaagccga attagaggcg
      661 attgcggtta aacagcagaa aatcacaaaa gaacgagaag aaattgctgt tgctattcaa
      721 gcggcggcaa ctcgtacgga aagattagcg ttatctgctg aactgcaagc gctagatcag
      781 aaagaaatcg ctctcgggca acagaaaata gcggttgaac gccagcaaat tgcaacaaaa
      841 caggctctca aagtggcgta tgctgaaaat gcagttgctc aaagtgcaat gaatgcaggt
      901 atggtcactg caaccacaac aaccagagcg atgaatgggg ttttagcggc tgcaagagct
      961 gaattgaact tactgaaagc agctgcactg tctaacccat taatgactct tgcaatggtg
     1021 gcaacgactg ccggtactgc cctttgggga ttttttgaaa gtcaaaaagc agctcgtgaa
     1081 gaagccctcc gctacgcgga cagcttagac tccgttcgag ccaatatcga aaaaatgact
     1141 aaggctcaaa ctgatgcaga aatggttaaa ttgtctcgtt ctatcaaaga acaggaaaca
     1201 gcattagcta gtctgaaaca acgccaagct gaacttacac gagaaatcga gcaaggagct
     1261 acggttttag atgatgcctt tggtgccggt gtccgtttcg aaaaaagtgc gaaagagtta
     1321 gcgaaagcac aagaagagtt aaagttagtt actgctgatg ttgaaaaagc acaaaataca
     1381 ttaaatgcca gtttagaagc tcaagaagcc ttacaagctc acgttccaat cgctaaccta
     1441 cgagaggaat ttgtcaaatt atatcctcac attgacgaaa gccaaatcaa agttgatggc
     1501 ttaaatattg ctatcggtaa ttttaccgtc aaatcaccgg agatggttat tgccgctaat
     1561 aacattgcta atgctcttgg tggcgttgcc ggagaggcta tgagagcggc tattctagtc
     1621 gctaatctgt caagtatgaa gctggatgct aacggtgctg caattatcga tcctaaacat
     1681 cttgaaaaaa tcgagcaaat tgaacgtaac aatgcgattg cttcggctaa aggcaaagat
     1741 aaaatcgcat tgcaagtaaa agacgctctg attaaatcag gtatgaaaga gggcgatgcc
     1801 ggatacgagc gactaaaagc agcatatgag caacaattta cgttgcaaaa tgcccctaag
     1861 cgcggcggaa aaccgaagaa aaccaaagcc gaacgctctg ccgaaagtta ccaaaaccaa
     1921 gtagcggaga tgaccaatcg tttatccggc ttaaagatag ataaagaaga tctcgtaaaa
     1981 tatggtggca tttctcaata tcaggaagtg cgtaaactta ctgaagatat tgctctgaat
     2041 gctgaaaaat ataaaaacta cggcactgaa ggcgtggcta aactcaaaga gctggctgct
     2101 aaaattgatt ctgaacaaca gcttttagac attgagcaat tccaagtcga tcacgataaa
     2161 aagctagagg caatgcaatt cgagctggat ttactgggaa aaactcgtac tgaaaaagaa
     2221 ttgttacaat ttaacaatca attagattta gaggccgagc ggctgaaaat taatatgacg
     2281 aaagagaata ttgctctttt agatcagaaa attgccaaaa ttaaggaaga atacgagcta
     2341 catcagaaaa agcaggaaga aactcgtgct tctgtaatga tgggaataaa agaaggctgg
     2401 aacaatattg aaaccgatgt cagcaatgtg gcggcaaatg ttgccaatat tactcaaaat
     2461 acctttgacg gtatggcgga tagcttgact aattttgtga tgacgggtaa agcggatttt
     2521 cgtagttttg ctaattccat attatctgat cttagcaaaa tgattatcaa aatgatgtta
     2581 tttaatgcta tcaaacaagg tgcaactatg ttgtttggct accaaggacc gactacaacg
     2641 gtaaatggta atgctgttta tggattaggt acttgggcaa caggtggcta cacaggcaat
     2701 ggcggcaaat acaccccagc gggtatcgtc cacaaagggg aatacgtcat caccaaagag
     2761 gcaacctctc gtcttggttt ggattatttg aattatctta actatggcag acgtggtttt
     2821 gcctctggcg gtggtgtcgc tgtaccaaga gtaccgtcat catcttatca gccgaaatcg
     2881 gctcaaagta gtatcagcgt acaggtcatc aataatggtg agccggtaga tgccaaagtc
     2941 agccaaaaac agcaaggcga gcaaacgcaa attactgttg agttaatgcg taaaattgcc
     3001 cgtcaggaag cgaacggaat gattcagaac aactttagag ccggaggagt atttgcctaa
     3061 tggaaacatt a
//
LOCUS       DANMBQ010000206         3029 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.209, whole genome shotgun sequence.
ACCESSION   DANMBQ010000206 DANMBQ010000000
VERSION     DANMBQ010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3029)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3029)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3029
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.209"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..395
                     /locus_tag="PXE92_002590"
     CDS             <1..395
                     /locus_tag="PXE92_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761773.1"
                     /translation="SVAAEIGVNQKTIKGRAKMTAKPTPSRLQATIKVNRSHMPMIRV
                     LERKSNRLSPTKGSIRVGKHTVQRGFRQRLANGRTHIMYRQGRKRYGIDVAKVPLSQP
                     LTQAFDRELKNYPEQVQAELAKQIAGKL"
     gene            392..787
                     /locus_tag="PXE92_002591"
     CDS             392..787
                     /locus_tag="PXE92_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761774.1"
                     /translation="MKIHTKIRKEVLELLQTKLPEIDNFYNGLPTFIDIEEEQLAVSV
                     YLDDISLQEITVCNNQWDAKLNITIHLKSTESAEDELDEWAEKIREIIDDYPEFEHLE
                     SVALSQYQYEQDQNQRTWHMATLIFDVEY"
     gene            815..1456
                     /locus_tag="PXE92_002592"
     CDS             815..1456
                     /locus_tag="PXE92_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761775.1"
                     /translation="MAKTTKVQGTKFRISVGREAQKAITAINLNTATLTIASSGYKKG
                     DAIELTGCGQLDGIYPVLSVTTDQVKLCEEVNWTGKDLPANYTKAKAALVQYSEQFCA
                     VKNIEKSDDTLSTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPTTEMQTRLRKLFYD
                     KSTFAYKLELPDNHGTTYGEGFIEAGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            1540..1941
                     /locus_tag="PXE92_002593"
     CDS             1540..1941
                     /locus_tag="PXE92_002593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761776.1"
                     /translation="MTLREKLLANKPKLQPIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGVLLFNPLDINDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSK"
     gene            1986..2216
                     /locus_tag="PXE92_002594"
     CDS             1986..2216
                     /locus_tag="PXE92_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL5761777.1"
                     /translation="MPERHFAEYRLFYQEQPFGLWRDDYRTAQLAHLTAMFNRDPKGK
                     APKLAEFMPFFNRTDEVEEIEDDGVADYLAKR"
     gene            2279..2506
                     /locus_tag="PXE92_002595"
     CDS             2279..2506
                     /locus_tag="PXE92_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761778.1"
                     /translation="MFEALDRFMINTIKIAIIVFLVACIFISMPNWWIASILVLFPTA
                     YLLDKYWWRNTEMYRRKMDKLVEEMKNNRQI"
     gene            2560..>3029
                     /locus_tag="PXE92_002596"
     CDS             2560..>3029
                     /locus_tag="PXE92_002596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5761779.1"
                     /translation="MSSSNRLTITLDVENSKLLAGFAQSDTVANKFARSFIVNMDQAQ
                     QKARQFADRSTKYLKNIEQAANNLNSSVSKERFWQIANRLQFPTSKVISYANSYTELG
                     NKLKLVTESESQHARAMAAVYDISLKTAQSTQATSSVYQTFAQNAKQLGISQNDV"
BASE COUNT         1016 a          617 c          629 g          767 t
ORIGIN      
        1 aatcggtggc ggcagagatt ggcgtaaatc aaaagacaat caaaggtaga gcaaaaatga
       61 cggcaaagcc cacgccgtca agattgcaag ccacgattaa ggttaatcga tcacatatgc
      121 cgatgattcg ggtactagag cgcaagtcca accgcctgtc acccaccaaa ggcagtatta
      181 gagttgggaa acacactgta caacgtggtt ttcgccaacg actcgccaat gggcgaacgc
      241 acattatgta ccggcaaggt cgtaagcgtt acggcattga tgtagcaaaa gtgccgttat
      301 cccaaccact tacacaagca tttgatcgag aattgaaaaa ctatcccgaa caagtgcaag
      361 cggaattagc taaacaaatt gcggggaaat tatgaaaatc cacacaaaaa tccgaaaaga
      421 agtccttgaa ttattacaga ctaaattgcc ggaaattgat aatttttata acgggctgcc
      481 aacttttatt gatattgagg aggaacaact tgcagtatcg gtttatctcg atgatatcag
      541 tctgcaagaa ataactgttt gtaataatca atgggacgcc aagctcaata ttacaatcca
      601 tctgaaatct accgagagtg cagaagatga attagacgaa tgggcggaaa aaattcgtga
      661 aattatcgat gattatcccg aatttgagca tttagagtca gtcgcgctct ctcagtatca
      721 atatgagcaa gaccagaatc agcgtacgtg gcacatggcg acattaatct ttgatgttga
      781 gtattaaaca aataatctct ataggagact taaaatggca aaaacaacaa aagtccaagg
      841 cacgaaattt agaattagcg ttggacgtga ggctcaaaaa gcaattaccg caattaactt
      901 aaatactgct actctaacga ttgcatcctc aggctataaa aaaggtgatg caatcgagct
      961 tacaggttgt ggtcaattag atggtatcta cccggtgtta tcagtaacta ccgatcaggt
     1021 aaaattatgc gaagaagtga actggacagg taaagattta ccagctaatt acaccaaagc
     1081 caaggcggca ctagtgcaat actcggagca attctgcgcg gtaaaaaaca ttgaaaaatc
     1141 tgatgatact ttgagtaccg aagatgtaac aacggtttgt tcagagggca cagaaaccga
     1201 gccgggtgaa attgaatttg gttcgatcaa actcagtttc ttccacaagc ctactaccga
     1261 aatgcaaacc cgattgcgca aactctttta cgacaaatcc acctttgcct acaaactgga
     1321 actaccggat aaccatggca cgacctatgg cgaaggcttt attgaggccg gcaacggttt
     1381 ctcgggcgaa gttaagggta agtatgaagg ctctgtatct attaagccaa gcaaacgcga
     1441 ctacttatta gtttaattgc aaaaaaacca taaaattcga ccgtttgtag aaataacaag
     1501 cggtcttttt atatcagaat tttacaaaag gaacgaacaa tgacactgcg tgagaaactc
     1561 cttgctaata aaccaaaatt gcaacctatc gaaatcaacg gcgagaccta ctacctgcgt
     1621 gaagctactg ttggtgatat gaacaagcag atttttgaaa cccgaagctg gctcattcaa
     1681 caagctgaac aagaaaatgt tgaattaccg gcagaagatg atgaaacctt tgatgaggct
     1741 ctcaaccgtt ttggcgaaaa ataccgcctt gctcaatcgg ttgcctaccg cttatgtgat
     1801 gaaaacggtg tattactgtt taatcctctc gacattaacg atctgaatgc cattgccgaa
     1861 ttagacagta aagtgattat cgactttaac caagccgtgt ccgccccaaa agactcagcg
     1921 agcgaagaaa gttccaaata accctttcgc tcgcactggg taaaacactt gaagaaatcg
     1981 aacaaatgcc cgaacgccac tttgccgaat atcggctttt ctaccaagaa cagcctttcg
     2041 gcttatggcg agacgattac cgcaccgccc aacttgccca cttaaccgca atgttcaacc
     2101 gtgatccgaa aggcaaagct ccaaaattag cggagtttat gccgtttttt aatcggacag
     2161 atgaggtgga ggaaatagaa gatgatggtg tggcagatta tttggcgaaa aggtaaagaa
     2221 aacagcttga aattccttgc tcttggatat atatttcctc aaagagaagg agggaagtat
     2281 gtttgaagca ctagaccgtt ttatgattaa tacgattaaa attgcaatta ttgtattttt
     2341 ggtcgcttgc atctttatta gtatgccgaa ctggtggata gcttctatct tagtactttt
     2401 cccgactgcc tatttgcttg ataaatactg gtggcgaaat accgaaatgt atcgccgcaa
     2461 aatggataaa ttagttgaag agatgaaaaa taatcgtcaa atctaaatta acatcaattc
     2521 tagcccgctt tatgcgggct ttttatttgg ggtgaaaaag tgagtagctc aaacagatta
     2581 actattacct tagatgtaga aaattctaag ttactagctg gattcgcaca atctgataca
     2641 gtagcaaata agtttgctcg cagcttcatt gtgaatatgg atcaggctca gcaaaaagca
     2701 cgtcaatttg ctgatagatc gacaaaatat ctaaaaaata ttgaacaagc agcaaataat
     2761 cttaatagct ctgtatcaaa agaacgtttt tggcaaattg caaatcggtt gcaattcccg
     2821 acaagtaaag tgattagtta tgccaatagc tacaccgaac tcggtaataa actcaaatta
     2881 gtcaccgaaa gtgaatccca acacgcccga gcaatggcgg cggtgtatga tatttcgctc
     2941 aaaaccgccc aatctacaca ggcaacctct tcggtttatc agacctttgc tcaaaatgca
     3001 aaacagctcg gtatttctca aaacgatgt
//
LOCUS       DANMBQ010000207         3018 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.210, whole genome shotgun sequence.
ACCESSION   DANMBQ010000207 DANMBQ010000000
VERSION     DANMBQ010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3018
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.210"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            207..407
                     /locus_tag="PXE92_002597"
     CDS             207..407
                     /locus_tag="PXE92_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761780.1"
                     /translation="MLPDLQNFELNKRTAQCPVWTFNIEYLRFHYELREHCDLIEPHK
                     EILKLLFGIIWAFIALRYVLSA"
     gene            416..709
                     /locus_tag="PXE92_002598"
     CDS             416..709
                     /locus_tag="PXE92_002598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2523 domain-containing protein"
                     /protein_id="HDL5761781.1"
                     /translation="MFKVIFMALSAIVNYLISDFLIKGVIFLSVYFLTSELLPVVIEM
                     LVSRKLIPDLNALFGQLPESMWYFLNIFQIPMAISLMISAMISRFVRRMPFIG"
     gene            719..1258
                     /locus_tag="PXE92_002599"
     CDS             719..1258
                     /locus_tag="PXE92_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005566788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761782.1"
                     /translation="MAVSAYIGIPGSGKSYEVVKSVILPAVASNRRVVSNIYGLNKEK
                     IHQYLLRKNKKLMIEELGEVIYVTNEQCLESDFLPSMDEQDSFCKAGDLIIIDEVWRI
                     WGNDKDIPKNHRSFIAEHRHFADPITGVTCDLVVINQDISQIPRFIKEGLRQLTECKN
                     TLVWGCVIVIGLMFFKERI"
     gene            1189..1752
                     /locus_tag="PXE92_002600"
     CDS             1189..1752
                     /locus_tag="PXE92_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761783.1"
                     /translation="MQKHVGLGLRNRYRVDVFQGKNLAKKNRTNSYQEKYDKKIFELY
                     KSYESDGAREAVTDSRQSIFSSFWVKVWIILLPLALFYCGYNLYIFLNGSESEVSHNT
                     EQAKFASDENHNDIVIHLLPTIGKPLSTKWRITGELKRDNKSFVILADNENRLRLEPS
                     SQFSFSGRMLQGEIDGGIVSYFSGESK"
     gene            1749..2882
                     /locus_tag="PXE92_002601"
     CDS             1749..2882
                     /locus_tag="PXE92_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspD"
                     /protein_id="HDL5761784.1"
                     /translation="MKIHQLGLLLMISSFSYAKNVDFKLEAVPLPKAISIIYDEVLQK
                     PYMLDPKLSNDSRVISFHTTEQQNFEQFIQRYFSNMNISVSEKKGVVYIGHIEPKQPK
                     VIKRSFVYSPIHRDVDYLASFLKDGTEGNQVFASGDKLVYYGTSEDIARVKSILKSID
                     TKSREVVVTGYVFEVQNIEKEGSGINLLAKLLSGKLGISVGYKQSYENFITVNAGNLD
                     AMFELFRTDQRFRVVSSPTLRVKSGSRGNFSVGSDVPVLSNVTYQDGRPIQSIEYRSS
                     GVIFDIQPTIKDKAIDLKIQQLSNFIKTDTGVNNSPTLVKRDLVTDVTVKSGDVIVLG
                     GLAENKISNGETSFSLLPKGWLSGKSNENTKTDIIVLLQVKEI"
BASE COUNT         1010 a          405 c          601 g         1002 t
ORIGIN      
        1 gtcttgtgtt taatgagagg gttgttagaa taaaacatga gagtttcctt tttgtttaga
       61 ttgatttttg acactcatat tctaaacggg aaactctcac tttttagagt gaattgtcag
      121 atcaagtctg atcttctaca cctgatatta atttgcctga tctggaagtt cctacggcgg
      181 aatcaattat atcccctttt aaaaaattgc taccagattt acagaatttt gaactgaata
      241 aacgaaccgc acaatgccct gtttggacat ttaatattga atacttgaga tttcattatg
      301 aacttagaga acattgcgat ttgatagaac cacataaaga aatcttaaag ctattattcg
      361 gcattatttg ggcgtttatt gctttacgtt atgtattaag tgcttaggag gataaatgtt
      421 taaagtgatt tttatggcac tatcagcaat tgtgaattat ttgatttcag attttttaat
      481 taagggtgtc atatttttat ctgtctattt tttaacttct gaactacttc ctgtagtaat
      541 agagatgctt gtgtctagaa aattgatacc tgatttaaat gcgttatttg ggcaattgcc
      601 tgaaagtatg tggtattttt taaatatttt tcagatacca atggctattt ctttaatgat
      661 ttcagcaatg atttcacgtt ttgttagacg tatgccattt attggataga ggagtgctat
      721 ggctgtttca gcgtatatag ggattcctgg aagcggcaaa tcgtatgaag tggttaagtc
      781 agtaatttta cctgctgttg cttcgaatcg aagagttgtt tccaacattt atggattaaa
      841 taaagagaaa attcatcaat atttactgcg taaaaataaa aaattaatga ttgaagagct
      901 tggtgaagtc atatatgtaa cgaatgaaca atgcttggaa tcggattttt taccatcaat
      961 ggacgaacaa gattcatttt gcaaagctgg ggacttgata attattgatg aagtttggcg
     1021 tatttgggga aacgacaagg atattccaaa aaatcatcgt tcatttattg ctgaacatcg
     1081 acattttgca gatcctataa caggtgtaac ttgtgattta gtcgtaataa atcaagatat
     1141 ttctcaaatt ccaagattta ttaaagaagg attgagacaa cttaccgaat gcaaaaacac
     1201 gttggtttgg ggttgcgtaa tcgttatcgg gttgatgttt ttcaaggaaa gaatttagct
     1261 aaaaagaacc ggacaaattc ttatcaagaa aaatatgata aaaaaatatt tgagctttat
     1321 aaatcttatg aatctgatgg tgcaagagaa gcggttacag atagtaggca atctatattt
     1381 tcatcttttt gggtcaaggt atggattatt cttttaccat tggcattatt ttattgtggc
     1441 tataaccttt acattttcct aaatggttca gagagtgaag taagccataa tactgaacag
     1501 gctaaatttg cttctgatga aaaccataac gatatagtaa ttcatttact tcctactatt
     1561 ggaaaacctt tatcaactaa atggcgaata acaggggaac taaaaaggga taataaatca
     1621 tttgtgatct tagctgacaa tgaaaaccgt ttaagacttg agcctagtag ccagtttagt
     1681 tttagcggtc gaatgttgca aggagagata gatggtggaa tagttagtta tttttcggga
     1741 gaatctaaat gaaaatccat caattagggc tattgctcat gattagctca ttttcttatg
     1801 ctaagaatgt tgattttaaa ttagaagctg tgccgttacc gaaagcaata tcaataatat
     1861 acgatgaagt gctacaaaag ccatatatgc ttgatcctaa attatctaat gattcaaggg
     1921 ttattagctt tcatacaaca gagcaacaga attttgagca gtttattcaa cggtatttca
     1981 gcaatatgaa tatcagtgta tcagagaaaa aaggtgttgt ttatattgga catattgaac
     2041 caaaacagcc gaaagtaata aaacgtagtt ttgtgtattc gcctattcat cgtgatgttg
     2101 attatttggc tagcttcctg aaagatggaa cagaaggaaa ccaagttttt gcaagtggcg
     2161 acaagcttgt atattatggt acttctgaag atattgcacg agtgaaaagt atcttgaaat
     2221 caatcgacac aaaaagccgt gaagtagtgg taactggtta tgtttttgaa gtgcagaata
     2281 ttgaaaaaga gggtagtggc ataaacttgt tagcgaaatt gctatcagga aaattaggca
     2341 ttagtgttgg ttacaagcaa agttatgaaa actttatcac cgtgaatgca ggaaatttag
     2401 atgcaatgtt tgaattgttt cgcacagatc agcgttttag ggttgtcagc agtccgacat
     2461 taagagtaaa atcaggctca agaggtaatt tttcagtagg ctctgatgtc cctgtattat
     2521 cgaatgtaac ctatcaggac ggaaggccta ttcagtcgat tgaataccgt tcaagcggtg
     2581 taatatttga tattcagcca acgataaaag ataaagcgat tgatttaaaa attcaacaac
     2641 tatcaaattt catcaaaaca gataccggtg taaataatag cccaacgttg gtaaagcgtg
     2701 atctggtaac agatgttacg gttaaaagcg gtgatgttat cgttttaggt gggttagctg
     2761 aaaataaaat atctaatggc gaaaccagtt tttcattgct acctaaaggt tggttaagtg
     2821 gaaaatcaaa tgaaaatact aaaacagata ttatagttct gctacaagta aaggaaattt
     2881 aatatgtatg aggaaaattt agattataaa ttgtcattaa atgaatttaa gtcgcttttg
     2941 tcagatttag acaaacaaat agatgagaaa tatagagaat cttttcattg tgaggctgta
     3001 aaatggatta tagagtat
//
LOCUS       DANMBQ010000208         3014 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.211, whole genome shotgun sequence.
ACCESSION   DANMBQ010000208 DANMBQ010000000
VERSION     DANMBQ010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3014
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.211"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            263..1858
                     /locus_tag="PXE92_002602"
     CDS             263..1858
                     /locus_tag="PXE92_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HDL5761785.1"
                     /translation="MQRHEQLAQVQQTQKWDFIIIGGGASGLGIAVDAASRGYKTLLL
                     ESHDFAKGTSSRSTKLVHGGVRYLANGDVALVREALRERGRLAKNAAHLFKNQSFIIP
                     NYKFKDCVMYRVGLGLYDMLSGNLSLGKTENISKTEAKRRLPTLNDTGLRTGTVYQDG
                     QFDDSRLAVNMAQTVVEHGGTVLNHAKVTSLHKTPQGKIDGVTFYDELNQQEHTVFGT
                     AVINATGVFMNDILSMDHGSTKKFVVPSQGIHLVLDKSFLPSNDALMIPKTSDGRVLF
                     AVPWHEVLVVGTTDTLIENPSYEPIPLEQEVNFILETAAQYLTKKPTRDDVKAVFAGQ
                     RPLAAPEKEGQSTKEVSRSHKVLTDATSGLITITGGKWTTYRQMAEDTVEEALKVHSE
                     LGNKPCVTVNLPIHGNIPAAQVNLQDHLYVYGSDIPQLRALMTETPEYAQKIHPRLDY
                     TVAEVIWAVRHEMAQTVEDVLARRVRLLFTDARAAIDSAAKVAAIMAKELGKDEMWQQ
                     QQVIQFLDVAKHYLLVDYQPQPI"
     gene            complement(1945..2244)
                     /locus_tag="PXE92_002603"
     CDS             complement(1945..2244)
                     /locus_tag="PXE92_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761786.1"
                     /translation="MENIKMEELKLTEKELLVLKGNALRMRFKAETNKTKNEIMQPFK
                     QVKQTGLALVNSPAVKTIALDFLVKRLLSMKGISFSVLGLTAFFLLQQKHKRDDS"
     gene            complement(2231..2626)
                     /locus_tag="PXE92_002604"
     CDS             complement(2231..2626)
                     /locus_tag="PXE92_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HDL5761787.1"
                     /translation="MLDNIKSGFRNSLITLLEIAQVRGEMARIEINEQKNQLISVLIF
                     ILLAFVFLLVSFVSLLFGLDNYLLPEQKVKVFFSIAIIMFIAVTICGMMILSALKKQR
                     HFMQSTLTELKLDIAAFKSALTLKQNGEH"
     gene            complement(2706..>3014)
                     /locus_tag="PXE92_002605"
     CDS             complement(2706..>3014)
                     /locus_tag="PXE92_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HDL5761788.1"
                     /translation="AKSLDAKREELTNEIRDILKNAEELFNETSDSSTEEYKKLKDKL
                     AKQFDDVKDRFATLKDDTVDSARTVVKQTDTLVQDNPYKAITVAGVVGLLLGVLISRR
                     "
BASE COUNT         1012 a          557 c          531 g          914 t
ORIGIN      
        1 attttttata aaaatgtgat tcatttcaca aaaaatttac cttaaaccac aaaaaatgat
       61 tgaaaaagaa aatcaaacat cagtatctct agcgataaaa ctctcttctt atgtacagag
      121 aaagaaccat aaaaagtaca atatagaaat attttgtgac atagatctaa tttttaaaca
      181 aatgtctttg aagtcatttt attttcgttt atgctaatta agtaatgatt aaatgtttta
      241 attcgagcaa aaggagcaaa aaatgcaaag acatgaacag ctagctcaag tacaacaaac
      301 gcaaaaatgg gattttatta ttatcggtgg tggcgcaagt ggtttgggga ttgcggtaga
      361 tgcagcttcc cgtggctata aaaccttatt attagaaagc catgactttg cgaaaggtac
      421 atcgagccga agcacaaaat tagtccacgg tggcgttcgc tatcttgcaa atggcgatgt
      481 tgcactcgtg agagaagcat tgcgtgaacg aggtcgttta gctaaaaatg cagctcattt
      541 atttaaaaac caaagcttta ttattccaaa ctacaaattc aaagactgtg taatgtatcg
      601 tgttggttta ggcttatacg atatgctttc aggcaacctg agtttaggaa agactgaaaa
      661 catcagtaaa actgaagcga aaagacgttt accaacctta aatgatactg gtttacgtac
      721 aggcactgtt tatcaagatg ggcaatttga tgactcacgt cttgcagtga atatggcaca
      781 aacggtagta gagcacggcg gtacagtact aaatcacgcc aaagtgactt cactgcacaa
      841 aacgccacaa ggcaaaattg atggggtgac tttctacgat gaactcaatc aacaagaaca
      901 tactgttttc ggcactgcgg tgattaacgc aaccggcgta tttatgaatg atattttaag
      961 tatggatcac ggtagcacga aaaaatttgt cgtaccaagc caagggattc acttagtatt
     1021 agataaatca ttcttaccaa gtaatgatgc gttaatgatt ccaaaaacct ctgacggacg
     1081 agtgttattt gctgtacctt ggcacgaagt gttagtcgta gggacaacag atactctgat
     1141 tgaaaatcct tcttatgagc caattccatt ggaacaagag gtgaacttta ttttagagac
     1201 agccgcacaa tatctgacaa aaaaaccaac tcgtgatgat gtaaaagcag tctttgccgg
     1261 tcaacgtccg cttgcggcac cggaaaaaga aggtcaaagc actaaagaag tatctcgtag
     1321 tcacaaagtt ctcactgatg caaccagcgg tttgattacg attacaggtg gtaaatggac
     1381 aacttatcgt caaatggcag aagataccgt agaagaagcg ttaaaagtcc actctgaact
     1441 aggcaataaa ccttgtgtga ccgtcaactt accgattcac ggtaatattc cggcagcaca
     1501 agtgaatcta caagatcatc tatatgtata tggctcagat attccacagt tacgcgcctt
     1561 aatgactgag accccggaat atgcacaaaa aatccatccg agactagatt ataccgttgc
     1621 agaagtgatc tgggcagttc gccacgaaat ggcacaaacg gttgaggatg tattagctcg
     1681 ccgtgttcgt ttgctcttca ctgatgcgag agcggcgatt gatagtgcag caaaagtggc
     1741 tgctattatg gcgaaagaat taggtaaaga tgaaatgtgg caacaacagc aagttatcca
     1801 gttccttgat gttgcgaagc actatttatt ggtagattat cagccacagc caatctaata
     1861 cgctaaaagc aagcggttaa aatcgataaa aatattgcaa ttacgttatt tgcaactttt
     1921 taaaccattt taaccgcttg tatattagct atcatctctt ttatgtttct gttgtaataa
     1981 aaagaatgct gttaacccca atacagaaaa gctaattcct ttcatactca ataatctttt
     2041 taccaaaaaa tctaatgcaa tggttttaac tgccggtgaa ttgaccagtg caagccctgt
     2101 ttgtttcact tgtttaaaag gctgcataat ctcatttttg gttttattgg tttccgcttt
     2161 aaatcgcatt ctaagtgcat taccttttag aactagaagt tccttttcgg ttaatttaag
     2221 ctcttccatt ttaatgttct ccattctgtt tcaaagttaa agcactctta aatgcggcaa
     2281 tatctaattt tagctcggtt aatgtacttt gcataaaatg gcgttgtttt ttcaaggcag
     2341 aaagtatcat cattccgcaa atagtcacag caataaacat aataatggca atagaaaaga
     2401 atactttaac tttctgttcg ggtaacaaat aattatctaa accaaataat aaactcacaa
     2461 aagaaactaa taaaaataca aaagccaata agataaatat aagtactgaa attaattgat
     2521 ttttttgctc attaatttca attcttgcca tctcaccacg cacttgagct atttccaata
     2581 atgtaatgag actatttcta aatccggatt taatattatc taacattata accattcctt
     2641 atattaaata ataagccacc ccaaatatgg cgtggcttaa tgacttaatg acgaattaca
     2701 gataattatc ttctagaaat taaaacacct aataataacc ctaccacacc ggcaacggta
     2761 attgctttat acggattatc ttgaactaag gtatcagttt gtttaactac agttcttgca
     2821 ctatcaacgg tatcatcttt taatgttgca aaacgatctt ttacatcatc aaactgtttt
     2881 gctaatttat cttttaactt tttatattcc tccgtagaag aatcagatgt ttcattaaat
     2941 aattcctctg catttttcaa aatatcgcga atctcgtttg ttaactcttc acgttttgca
     3001 tctaagcttt tagc
//
LOCUS       DANMBQ010000209         2866 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.212, whole genome shotgun sequence.
ACCESSION   DANMBQ010000209 DANMBQ010000000
VERSION     DANMBQ010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2866
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.212"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            1..466
                     /locus_tag="PXE92_002606"
                     /pseudo
     CDS             1..466
                     /locus_tag="PXE92_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248263.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            477..962
                     /locus_tag="PXE92_002607"
     CDS             477..962
                     /locus_tag="PXE92_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HDL5761789.1"
                     /translation="MYSLYLKILSECDWCCDPKTLSTYQQEWLLHEGSLTQKLYDVAT
                     NFNVEVVQEKWIAKNSEKTTACNEDVWSREVLLKDGEKNWIFAQTLVPRSTIENIAQN
                     VLELGNQPIGLWLFSQNPTRTKLEWTQTENGLFARRGVYEIRGYSLEIRELFLETFPY
                     L"
     gene            complement(1000..1869)
                     /locus_tag="PXE92_002608"
     CDS             complement(1000..1869)
                     /locus_tag="PXE92_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL5761790.1"
                     /translation="MKNINTQAVGWIGLGQMGEPMAKHLLNSGVNVGVYNRDPAKAEK
                     VVEAGGTLYPSVLELVKAYDVIFLMIADYAAVQQVLSDEVLAELNGKVVVNMSTISPS
                     QNQAVEALLAQHGAEFVEAPVSGSSKVAEAGKLLVLAAGKEETVELLKPLFAAFSTTT
                     FYYGEVGKAGGIKLMINSLLGIFIQAYGEALNFADQYGIPKEKVIEMISGSFMNSPIF
                     QAKVPMYQANEFPPAFMMKHMTKDFNLASEEIAKLGKSYPLIEQATKTYNQANDSGLS
                     EVDMAAIYQFLAK"
     gene            1999..2790
                     /locus_tag="PXE92_002609"
     CDS             1999..2790
                     /locus_tag="PXE92_002609"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDL5761791.1"
                     /translation="MKPTILLYDSGMGGLTIYDEIRKVLPHAHYLYCFDNAFFPYSEK
                     SEAVLIERAVKIVQKIAEKQPLDMVVVACNTASTVVLPALREHFNFPIVGTVPAIKPA
                     AAISETKVIGLLATKGTVARPYVDELIRKYAQDCTVEKIGTTDLVEIVEEKQRSGKVD
                     MNRLQKVVEAWQGKPELDTVILGCTHFPLVKAELQQLLPDVKYFVDPGVGIAKRVLSL
                     LEERKFQQKADFENQAFCTKQSSAFNIKQDVMQNWGFNNLSVIDI"
BASE COUNT          869 a          541 c          602 g          854 t
ORIGIN      
        1 ttatatgtgg tgggtgaact gcacgattat gaatttgagc atcagcaagt tgcggaactg
       61 aataattttc tcaaaagcct aattgctaat aaaatcaaat ctgttgaggc aaacttcgag
      121 gttaaggaat ccaaaaaagt ggaaggtagt tatagaatta ttttagatgg gaaatcactt
      181 acagaaagtg aaagaagtac ggtgatggtt taattcagct caaaatccat ctattactta
      241 tcaggcggaa gggaacttgg tgaaattagc caatagagaa gagcttttgc aaaaattccg
      301 atttaaacaa gcgcttgagg cgaatgtgcg ttattacaaa atgaaaagtg gtcttcaaaa
      361 tacggctgaa ggagcgttaa gtattgtaat gttgcctgtt gctgtagtag ctgttttacc
      421 attctatatg ttttgggttg gtgcttgtgc cacttacgga tgttaaataa ctttttatgt
      481 attctctata cctgaaaatt ttatcggaat gcgattggtg ttgtgatcca aaaacacttt
      541 ctacctacca gcaagaatgg cttctgcacg aagggtcact tacccaaaaa ttgtatgatg
      601 tcgcaaccaa tttcaacgtg gaagtagtac aagaaaagtg gattgcaaaa aacagtgaaa
      661 aaacgaccgc ttgtaatgaa gatgtttggt cgcgagaagt gttactgaaa gatggtgaaa
      721 aaaattggat ttttgcccaa actcttgtgc caagatcaac aatcgaaaat atcgctcaaa
      781 acgtgttgga attgggcaat cagccgattg gtttatggct attttctcaa aatcctactc
      841 gcaccaaatt agaatggaca caaacagaga acggtttatt cgctcggcgt ggggtgtatg
      901 aaattagagg gtattctctg gaaattcgag agcttttttt agaaaccttt ccttatttat
      961 aaaaaaatcg gttggtaatg acaccaaccg attttcatct tattttgcca agaactgata
     1021 aattgcagcc atatccactt cgctcaagcc tgaatcattg gcttgattgt aggttttagt
     1081 ggcttgctca ataagcgggt aagatttgcc taatttcgca atttcttcgc ttgccaaatt
     1141 aaaatctttg gtcatatgtt tcatcataaa cgcaggcgga aattcattag cttggtacat
     1201 cggcactttt gcttggaaga tcgggctgtt cataaacgag cctgaaatca tttcgattac
     1261 tttctctttc ggaatgccat attggtcggc gaagtttaac gcctcgccat aggcttgaat
     1321 gaagatgccc agtagcgagt tgatcatcaa tttaatccca ccggctttac ccacttcacc
     1381 ataatagaaa gtggtggtac taaaggcagc gaaaagcggt ttgagcaact caacggtttc
     1441 ttctttaccg gcagccagta ccaatagttt acctgcttct gccactttgc ttgaaccgga
     1501 aaccggagct tcaacaaatt ctgcaccgtg ttgggctagt agagcttcta ccgcctggtt
     1561 ttggcttggg gaaatggtgc tcatattcac cactactttg ccgtttaatt cagccaacac
     1621 ttcatcgctt aacacctgtt gcacggcggc atagtctgca atcatcaaga aaatcacatc
     1681 gtaggctttc accaattcca acacagaagg atataatgtg ccgcctgctt caactacctt
     1741 ttctgctttt gctgggtcgc ggttgtaaac gcccacgttc actccgctat ttagcaaatg
     1801 ttttgccatc ggttcgccca tttgccctaa accaatccaa ccgactgctt gtgtattaat
     1861 gtttttcatt atttttctcc ttactgaata aagcaaattg attattgcga ttttccctca
     1921 tcaagtcaaa tagagagaac ttgaatatag caatggaaaa gagtagcatt ttagcactta
     1981 cttttttgaa caataccaat gaaaccaaca attcttttat acgattccgg aatgggcgga
     2041 ttgacgattt acgatgaaat ccgaaaagtg ttaccgcacg ctcactattt atattgcttt
     2101 gataacgctt ttttcccata ttccgagaag tcggaagcag ttttaattga gcgagcggtc
     2161 aaaattgtgc aaaaaattgc agaaaaacaa ccgcttgata tggttgttgt tgcttgtaat
     2221 acggcaagca cagtggttct gccggcattg cgtgagcatt ttaattttcc gatagtagga
     2281 actgtaccgg caattaaacc ggcagcggca atttccgaaa ctaaagtcat cggcttgctc
     2341 gccactaaag gcacggttgc tcgcccttat gttgatgaat tgataagaaa atatgctcag
     2401 gattgtacgg tagaaaaaat tggcacaacc gatttggttg aaattgttga agaaaaacaa
     2461 cgaagcggta aagtggatat gaaccgacta caaaaagtgg tcgaggcttg gcaaggtaag
     2521 ccggaattgg atacggttat actcggttgt acccattttc ccttagtcaa agctgaatta
     2581 cagcaattat tgcccgatgt gaaatatttt gttgatccgg gtgtaggtat tgccaaacgg
     2641 gtgctaagcc ttttggaaga acgcaaattt caacaaaaag ccgattttga aaatcaagca
     2701 ttctgcacta aacaaagttc tgcatttaat atcaaacaag acgttatgca gaattgggga
     2761 tttaataatc tttcggtgat tgatatttaa acaaaacaat ctgttttgat gaaaaaaggt
     2821 tcagttgagc aaaaacttta aaaaagggct tgcactcaat tttaaa
//
LOCUS       DANMBQ010000210         2818 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.213, whole genome shotgun sequence.
ACCESSION   DANMBQ010000210 DANMBQ010000000
VERSION     DANMBQ010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2818
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.213"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            66..311
                     /locus_tag="PXE92_002610"
     CDS             66..311
                     /locus_tag="PXE92_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761792.1"
                     /translation="MTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKEFIE
                     PGATIRRSNDQPSIGSVDCDPRKKIHYKFDVHLMNTL"
     gene            530..1195
                     /locus_tag="PXE92_002611"
     CDS             530..1195
                     /locus_tag="PXE92_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4852 domain-containing protein"
                     /protein_id="HDL5761793.1"
                     /translation="MCKKAFPLWGLIFGLLLSTSAFSVSKNFNYQNILMESLHFSENI
                     ELSSLSKDWLLYSDRNTYHKYQNDEFEFQDKIEQAGKKLQKLVDDRKSEEAPIVFTIP
                     VNSEFGNYDFEQGKFEYQPLMNGHMYISSNQYTENLPRKINLYVSNPEFIDGIPMGKD
                     KAKEFLQKRKNSLGNINRSVILYVDVQFEKAEGLDNLTGKVLSYSVKDNKDKVIYSSR
                     QKQ"
     gene            1219..1599
                     /locus_tag="PXE92_002612"
     CDS             1219..1599
                     /locus_tag="PXE92_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761794.1"
                     /translation="MKFIDFGKQLAKPVKFIKQRTAFLPKPLQQAVVFAVIFAGLPLF
                     LVGFTVLRILNGTPVEDISTNDVAYNPNHVENTVNEIEDDSEDSKPEDLWDVIADQDE
                     NQLDGYRDGYFGYGLYQGGYFVKR"
     gene            complement(1652..>2818)
                     /locus_tag="PXE92_002613"
     CDS             complement(1652..>2818)
                     /locus_tag="PXE92_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
                     /protein_id="HDL5761795.1"
                     /translation="QMNSELGNQQARVPLWWGLFHQINKGVTHALTASIPCKPDLRQV
                     RFEVQHEKINNPALLTEVRLFVQQCYVPARQKIQSSQLSLTPAQVRETSWLGGRILLT
                     NSELYPRYRAQQPHSLFPYNASRDNGLPNNGEGGFPNCAEWWDTANTGLKDRLLADVK
                     QNFSAKVIDFFSSKENADESILRTVLRAENMDISRGKVYPGYGGNLDPTFANATTRLT
                     SSVGSLAASFAAFPAFDAMRQALPMVHAFMLMAVIIITPLVIVMSGYSLKTLVTLTFV
                     SFALVSLTFWWELARWLDSWLLSALYDSSAHSRINPYFLENTQDDFIVNFVMGSMFLV
                     LPAIWLGSMSWAGVKIGDIAAGFTTDSLDSKSAGSQGGNLVKKGGKEISAGFNK"
BASE COUNT          927 a          522 c          538 g          831 t
ORIGIN      
        1 gggtaggaaa tgattacgag tattcgtatg acaaaactac tttcaaaaac ccgattaaaa
       61 aggcagtgac caacgacggt tcgattatcg ccagaggctc aggttttact acttatgcct
      121 tagagttgga aaatgatggc ttgaaatatc tagtcggatt tgttcaacca aatggaaatg
      181 caaaagagtt tattgagccg ggagcaacaa ttcgccgtag taatgatcaa ccaagtattg
      241 gttctgtgga ttgtgaccct cgtaaaaaaa tccattataa gtttgatgtt catttgatga
      301 atactttata atacctttgt ggtgctagag ctagcccaag ttaaaaaaga caaagctcgg
      361 cagatgaaca attgtggtgt cagagctgac ccacgttaaa aaacacaatg ctcggtaggt
      421 aaatccctta ggtttaaaaa atctaaggga tttttgttta aaagacttgc tctttattat
      481 caggtggatc tatcataatt taaactctct aatgtgtcag gagataaaaa tgtgtaaaaa
      541 agctttccca ttatggggct taatcttcgg attactgcta tccacttcag cattctcagt
      601 gtctaaaaac ttcaactatc aaaacatatt gatggaatca ttacatttta gtgagaatat
      661 cgagcttagt tcgttatcta aagactggtt actttacagc gatagaaata cgtatcataa
      721 atatcaaaat gacgagtttg agtttcagga taaaattgag caagctggta agaaactaca
      781 aaaactggtg gatgacagaa aatctgaaga agcccctatt gttttcacaa ttcctgtaaa
      841 ctcagaattc gggaattatg attttgaaca aggtaagttt gagtaccaac ccctgatgaa
      901 tgggcatatg tatatttctt ctaatcaata tactgaaaat ttgccaagaa aaattaatct
      961 gtatgtttct aatcccgagt ttattgacgg tatacctatg ggcaaggata aagctaaaga
     1021 gtttttacag aagcgtaaaa attctttggg aaacataaat cgctctgtta tattgtatgt
     1081 tgatgtacaa tttgaaaaag cagaaggatt agataattta acaggaaaag ttttatctta
     1141 ttctgtaaaa gacaataaag ataaagtaat ttatagtagt cgccaaaaac aataaccttt
     1201 tatcttagga aagatactat gaaatttatc gatttcggaa agcagctcgc taagccggtt
     1261 aaatttatca aacaacgtac cgcattttta ccaaaaccgc tacaacaagc tgtcgttttt
     1321 gcggtgattt ttgcaggact tcccttgttt ttagttggat tcacggttct gcgaattctc
     1381 aatggaacac cagtagaaga tatttcaaca aatgacgtag catataatcc aaaccacgtc
     1441 gaaaacacgg ttaatgaaat tgaagatgat agtgaggata gtaagccgga agatttatgg
     1501 gatgtaattg ctgatcaaga cgaaaatcag cttgatggat atcgtgatgg atattttgga
     1561 tatggactct atcagggtgg ctattttgta aaaagatgag aaaatatgat tagaaattaa
     1621 taaggtagag attaacctct accttattgt tttatttgtt aaaccctgca gatatttcct
     1681 taccgccttt cttaactaaa ttaccacctt gagagcctgc ggatttacta tctaatgaat
     1741 cagtagtaaa accggcagct atatctccta tttttactcc agcccacgac atactgccta
     1801 gccaaatcgc cggtaaaacc aagaacatcg aacccatcac aaaattgacg ataaaatcat
     1861 cttgcgtatt ttcaaggaaa tacggattta ttcgactatg tgcactggaa tcatatagag
     1921 cggatagtag ccaagaatct aaccatcttg ctaattccca ccagaatgtc agtgatacca
     1981 aagcaaaact cacaaaagtt aatgtaacta atgttttgag agaataacca ctcatcacaa
     2041 taaccagcgg agtaatgatg atcacagcca tcaacataaa agcatgtacc atcggcagtg
     2101 cttgtcgcat tgcatcgaat gctggaaagg ctgcaaagct ggcagctaag cttcccactg
     2161 aagatgttaa tcgagtcgtt gcatttgcaa atgtaggatc taaattcccc ccatacccgg
     2221 gataaacttt ccctctcgaa atatccatat tctctgctcg taatacagta cggagtatgg
     2281 attcatccgc attttctttg ctgctaaaaa aatcaatcac ttttgcagag aagttctgtt
     2341 tgacatcagc taataaacga tcttttaaac cagtattcgc cgtatcccac cactctgcac
     2401 aatttggaaa accaccttcc ccattattcg gcaatccatt atcccgggaa gcattgtagg
     2461 gaaatagact atgaggttgt tgagctcgat aacggggata aagctcactg tttgtcaaaa
     2521 gaatacgacc acctaaccag ctggtttcac gcacctgtgc cggagtcaat gagagctgac
     2581 tgctttgaat tttctgacgt gcaggtacat aacattgttg tacaaataag cgaacctcag
     2641 tcaataatgc aggattattg attttttcat gttggacctc aaagcgaact tgacgtaaat
     2701 ccggtttaca cggaattgaa gctgttaatg cgtgtgtaac tcctttgttg atttgatgga
     2761 ataatcccca ccaaagcggt actctcgctt gctggttgcc caattcagag ttcatttg
//
LOCUS       DANMBQ010000211         2817 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.214, whole genome shotgun sequence.
ACCESSION   DANMBQ010000211 DANMBQ010000000
VERSION     DANMBQ010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.214"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..1743
                     /locus_tag="PXE92_002614"
     CDS             <1..1743
                     /locus_tag="PXE92_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005687591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer ATPase"
                     /protein_id="HDL5761796.1"
                     /translation="TIVIHPQDKLEAHLEKISSRAVGENFESKYLKEDCQTVQSYLKE
                     GHKLYQAAIAFYVRGKDEKELRTRSRQLRTILLSNNLEPVKENAEIAPLNSYLRWLPM
                     NFNPQMDAKSHYYTKYYFVQHLANLLPIFGRDTGTGNPGITYFNRGGAPFNFDPFNRK
                     DRTKNAHKLLLGPTGSGKSATLCGQLCQAMAVYRPRTFVVEAGNSFGLLADYAERFGL
                     TVNRITLAPNSGIVLPLFSEAHRLLDMELNPEDVPEDIEDNDDTDDEGDMQRDLLAEM
                     ELTARLMITGGEKKEDEKMSRADRAAIRRAILNAARQTKSEGRQTLTEDIKNALEALS
                     HDEHTREERRTRLAEMAESLEMFCTGVNGQFFNREGAIWPEADLTLVDLAMFAREGYE
                     AELAISYISLINHINSLGEKYQHSDRMILNVTDESHIITANPLLAKFLVKGSKMWRKL
                     GIWLWLATQNMDDFPNEAAKLLSMVEWWELLNVSASEIDEINRFRKLSEAQKTMLLSA
                     KKSDRKYTEGVVLATNMEALFRVVPPSLFLALGMTEKHEKAERKQLMMQHGYTELDAA
                     LEVAARIDKARGIH"
     gene            1743..2171
                     /locus_tag="PXE92_002615"
     CDS             1743..2171
                     /locus_tag="PXE92_002615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761797.1"
                     /translation="MNKQHYRLFNAGPQKSSLGVVSPAVETQLLGFCEQIRQLIGVGK
                     QITLFPHRVVQNHWAIELSGEQGSVHLLLNVTGRSLLPTSNNSEWSARLIIEIADHVD
                     AYWFSAFLTQYLGLKSNLLPLSTSIADNSVYNEVIDNNEV"
     gene            2161..2478
                     /locus_tag="PXE92_002616"
     CDS             2161..2478
                     /locus_tag="PXE92_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5761798.1"
                     /translation="MKSDTTKPKMTRVITVLKITLMIIGIILLLLVVGWLAMTYFPST
                     NFQAWFYETRYAWLGWRFVLYVAIWLLMVQLNRKGQMPLKARLMILSVIPIIEGLNLL
                     YLL"
     gene            2489..>2817
                     /locus_tag="PXE92_002617"
     CDS             2489..>2817
                     /locus_tag="PXE92_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
                     /protein_id="HDL5761799.1"
                     /translation="MTFTVDSYLEYFLTLLAWIINNNIFAVLVQTGLFVLPLIFVLIS
                     TWMEVKKQGEDEGNKGDLLITWLSLKFYPAMFVVVLVLAPMIPINLNNIELNVERSKA
                     CGYRVPTA"
BASE COUNT          850 a          530 c          617 g          820 t
ORIGIN      
        1 accatcgtca tccatccaca ggataagttg gaggcacatt tagaaaaaat tagtagtcga
       61 gcggtaggtg aaaattttga gtcgaaatac ctaaaagaag actgtcaaac tgtacagtct
      121 tatcttaaag aggggcataa actctatcaa gcagctattg cattttacgt tcgaggtaag
      181 gatgaaaagg agctacgtac ccgttctcgc cagttgagaa cgattctgct cagtaacaac
      241 ctagaacccg tgaaggaaaa tgcagaaatt gccccactta acagctattt gcgttggcta
      301 ccaatgaatt ttaatccgca gatggatgcc aaatcacatt actacacgaa gtactatttt
      361 gtacaacatt tggcaaactt attacctatc tttggccgag ataccgggac tgggaatccg
      421 gggatcactt actttaatcg aggaggagca ccatttaatt tcgacccatt taaccgtaaa
      481 gacagaacca aaaatgctca caagctatta ttaggtccaa ccggttcggg aaaatcagct
      541 acgttatgtg ggcaattatg tcaggctatg gccgtttatc gcccacggac ttttgttgtt
      601 gaggcaggaa attcatttgg tttattagcg gactatgcag aacgtttcgg actgactgta
      661 aatcgcatta cgttagctcc aaacagcggc attgtcttac cactcttttc agaagcacat
      721 cgtctattgg atatggaatt aaacccggaa gatgtgccgg aagacattga ggataacgat
      781 gacactgatg atgaaggtga tatgcaacga gatttattgg ccgaaatgga gctgacggca
      841 cgtttgatga tcaccggagg tgaaaagaaa gaagatgaaa aaatgagccg tgctgatcgt
      901 gctgctattc gtcgtgccat tttaaatgca gctcgccaaa ccaaatctga aggcagacaa
      961 acgctgactg aagatattaa aaatgctttg gaagcattaa gtcatgatga gcatactcgt
     1021 gaagaacggc gtacccgttt agcagaaatg gcagaatcat tagaaatgtt ttgtaccggt
     1081 gtaaatgggc aattttttaa tcgagagggg gcaatttggc cggaggctga tctaacctta
     1141 gttgatttag ctatgtttgc ccgggaaggc tatgaagcag agttggccat ttcctatatt
     1201 tcactcatta accatatcaa cagtcttggt gaaaaatacc aacacagtga tcggatgatt
     1261 ctgaatgtaa cagatgaatc acacattatc acggccaacc cattattagc taaattccta
     1321 gttaaaggct caaaaatgtg gcgtaaacta gggatttggc tatggcttgc tactcaaaat
     1381 atggatgact tcccgaatga agcggcgaaa ttactctcaa tggtcgaatg gtgggaattg
     1441 ttgaatgtgt ctgccagtga aattgatgaa atcaatcgtt tccggaaact gtcagaggcc
     1501 cagaaaacga tgttgttatc tgccaaaaaa tcagatcgta aatataccga gggcgtggta
     1561 ttagcaacga atatggaagc tctattccga gttgtaccgc ctagcttatt tttagcttta
     1621 ggaatgactg aaaaacatga aaaagcagaa cgtaagcaac tgatgatgca gcacggctat
     1681 accgaactcg atgcagcttt agaggttgca gctcggattg ataaagcaag aggaatacac
     1741 taatgaataa acaacattac cgtttattta atgcaggccc acaaaaatcc tcattaggag
     1801 ttgtatctcc agcggtagaa actcaattgc ttggattttg tgaacaaatt cgccaactca
     1861 tcggcgttgg gaaacagatt accttattcc ctcatcgtgt cgtgcaaaat cactgggcta
     1921 tcgaactttc tggtgagcag ggttctgttc acttattact taatgtgacg gggcgttctt
     1981 tgctaccaac ttccaataac agtgaatggt cagctcgttt aattattgaa atagctgatc
     2041 atgtggatgc ttattggttt tcggcattcc ttactcagta tctcggtttg aaaagtaatc
     2101 ttttaccctt atccacatca attgcggata actctgtgta taacgaggta atagataata
     2161 atgaagtctg atacaacaaa gcctaaaatg acaagggtta ttactgtatt aaaaataacc
     2221 ttgatgatca tcggtattat tttattacta ctcgttgttg gctggttggc aatgacctat
     2281 tttccttcca caaattttca agcgtggttc tatgaaaccc gctatgcctg gttgggatgg
     2341 cgatttgttt tatatgtagc tatttggcta ttgatggtac aacttaatcg aaaagggcaa
     2401 atgccattaa aagccaggtt aatgatttta tctgtcatcc caattattga gggacttaat
     2461 ttactgtatc tactttaagg aggatgagat gacctttacc gtagatagtt acttagaata
     2521 ctttcttacc ttactggctt ggatcatcaa caacaatatt ttcgctgtat tggttcaaac
     2581 agggttgttt gttctgcctc tcatttttgt cttaatcagt acgtggatgg aagtcaaaaa
     2641 acaaggtgag gacgaaggta ataaagggga tttacttatt acttggctca gcctcaaatt
     2701 ttacccggcg atgtttgtcg ttgtattggt cttagctcca atgataccga tcaacctgaa
     2761 taatattgag ttgaatgtag aacgttctaa agcctgtggt tatcgtgttc caactgc
//
LOCUS       DANMBQ010000212         2793 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.215, whole genome shotgun sequence.
ACCESSION   DANMBQ010000212 DANMBQ010000000
VERSION     DANMBQ010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2793
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.215"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>2793
                     /locus_tag="PXE92_002618"
     CDS             <1..>2793
                     /locus_tag="PXE92_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761800.1"
                     /translation="WEIYDLAPILSKMLGVEISFDKWALYDVARYCDQLVPDGMGGME
                     PRFTCNVWLTEVKTAYDLLNDFCSVFRAIPIWTGTEVSVIIDRPRDPVWTYTNANVVG
                     GFERSYSARKSRHNAVQVTYSDKTNGYESAIEYVSDDEEIKKHGLNLSQITAFGCTSR
                     GQAHRTGKWILETEKREKETITFTVGREGLMHLPGDIIRVADSHYAGTEIGGRVLAIN
                     GRKVTLDREISIDNASYFTYINGEATHSSKIQSVNGKEITLDSTPTGLETYGVWSLST
                     KQISSGLYRSISIVENADGTNTITALQHEPQKEAIVDNSAHFVETARTLYKAPQINAV
                     EVSTGYDGKLYITGDISSGDGKLTYDIKITKDGNLYQYKKGLSDPNIELSDLPNGDYT
                     VIIYGKNAKGQIVTEKTQTFTIDRPPAPTGVVVTGGLGQITLEWDWVNEVTQTEIFAA
                     ETDNFALAKKIAKVTARTYAHTLKGNKVVRYYWLRHTRGINVGPFYQQQGVRGQTAVD
                     LDARLTELNTQLSRNIVNEVFDVAAPARGLELVKTVANLTDKGTKLASSQVYNQADGK
                     LYTWNGTAYSATVAAEDVTGKLSKSKIDTSLISQLTGADNTANLARRLAETAQSNINQ
                     EITNRQDAVTAEANNRTKAIQAESANLTKKIQAEATARGAAVTQLQNVDAQQAQLISA
                     VTAKADNALSGLEEEKTARANADKAESQAREALTARMGAAESNIVTIQRTVANNAQSI
                     SEVSQNLNAKIDNINIGGRNLLRDSEFNAYNKWGSPQIEFAENANRRTIKVTSTGTNG
                     PVGIVSSNRHSTSYFQQGETYTLSLFARGSKALDYLYLMRQDGNNVRLPVINVASETE
                     FNHYKLTFKAPFTTQQGYVLIGFRQTSTEQFVEFHSVKLEKGNVATDWTPAPEDVESA
                     VSAVSADLTSYKQTQA"
BASE COUNT          896 a          578 c          623 g          696 t
ORIGIN      
        1 cttgggaaat ttacgattta gctccgattt taagcaaaat gcttggggtt gaaatcagtt
       61 ttgacaaatg ggcgttgtat gatgttgctc gctattgcga tcaacttgtg ccggacggta
      121 tgggtggaat ggagcctcgt ttcacctgta acgtatggct cacggaagtt aaaactgcct
      181 atgacttgtt gaatgatttc tgctcggtat tccgtgcgat tccgatttgg accggaacag
      241 aagtatcggt cattatcgac cgtccgcgtg atccggtttg gacttacaca aatgctaatg
      301 tagttggtgg atttgaacga tcctactctg ctcgcaaatc acgccataat gcagtgcaag
      361 ttacttattc ggataaaaca aatggctatg aaagtgcgat tgaatatgtc tctgatgacg
      421 aggaaatcaa aaagcacggc ttaaatttaa gtcaaattac tgctttcggt tgtacctctc
      481 gggggcaagc acaccgtacc ggaaaatgga ttttggaaac cgaaaaacgg gaaaaggaaa
      541 ccattacttt taccgtggga cgtgagggct taatgcactt gccgggcgat attattcgtg
      601 tggcagacag ccattatgcc ggtacggaaa ttggcggacg tgtactggcg attaatgggc
      661 gaaaagtcac gttagatcgt gaaattagca ttgataacgc cagttatttt acctatatca
      721 acggtgaggc aacgcactct agcaaaatcc aatcggtaaa cggcaaagaa attacgctgg
      781 atagtacacc aaccggctta gaaacctacg gtgtttggtc gttatcgact aaacaaatca
      841 gctctggatt atatcgctca atctcgattg tcgaaaatgc ggacggcaca aacactatca
      901 cagcgttaca acacgaaccg cagaaagagg caattgttga taactccgct cactttgtgg
      961 aaacggctag aacactctac aaagctccac aaattaacgc agtggaagtc tcgaccggtt
     1021 atgacggtaa gctctacatt accggtgata ttagctccgg tgatggcaag ctaacctatg
     1081 atattaaaat taccaaagat ggcaatttat atcaatacaa aaaaggctta agcgatccga
     1141 acattgaact aagtgattta cctaacggcg attataccgt cattatttac ggcaaaaacg
     1201 ccaaagggca aatcgtcacc gaaaaaacac aaacctttac tattgatcga cctccagctc
     1261 cgaccggtgt agtagtaaca ggtggattag ggcaaattac cctcgaatgg gattgggtaa
     1321 atgaggttac gcaaaccgag attttcgcgg ccgaaaccga taatttcgcc cttgcaaaaa
     1381 aaatcgcaaa agtgaccgct agaacctacg ctcacacact aaaaggtaac aaggttgtac
     1441 gctattattg gctacgtcat accagaggca ttaatgtcgg accgttttat caacaacagg
     1501 gggtaagagg acaaacagcg gttgatttgg atgctcgatt aaccgaatta aacactcagt
     1561 tatcacgcaa tattgttaat gaggtttttg atgttgctgc accggcaaga ggtttagaat
     1621 tagtgaaaac agtcgctaat ttgaccgaca aaggtactaa actggcgtca tctcaagttt
     1681 acaatcaggc tgacggcaag ctctatactt ggaacggtac agcatactca gctacagtgg
     1741 ctgcggaaga tgttaccggc aaattatcaa aatctaaaat tgatacgtcc cttatttcgc
     1801 aattaacagg tgcagataac accgcaaatt tggcaagaag attagcggaa acagctcaaa
     1861 gcaacattaa ccaagagatt actaaccgac aagatgccgt tactgccgaa gcaaataacc
     1921 gtactaaagc cattcaagcc gaaagtgcga atttaacgaa aaaaattcaa gctgaagcaa
     1981 ccgctcgtgg ggctgctgtt acacagttac aaaatgttga tgctcaacaa gcacagttga
     2041 tttctgctgt cacagcaaaa gctgataatg ctctttcagg cttggaagaa gaaaaaacag
     2101 cacgagcaaa cgccgataaa gcggagtctc aagcacgtga agcattaaca gcaagaatgg
     2161 gagcagctga aagcaatatc gtaactattc aacgtacggt agcaaataat gcccaaagca
     2221 ttagtgaagt cagtcagaat ttaaatgcta agattgataa tattaatatc ggcggtcgga
     2281 atttattaag agacagcgag ttcaatgcgt acaataaatg gggtagccca caaattgaat
     2341 ttgctgaaaa tgcaaatcgc cgaactatca aagtaacctc aacaggtact aacggtcctg
     2401 ttggtattgt ttcatctaat cgccattcca catcttattt ccaacaagga gaaacttata
     2461 cactctcatt atttgctcga ggaagtaagg cactagacta tctctatcta atgcgtcaag
     2521 atgggaataa cgttagatta ccagtgatta acgttgcctc tgaaactgag tttaatcatt
     2581 acaaactcac gttcaaggct ccttttacca cgcaacaagg ttatgtctta atcggttttc
     2641 ggcaaaccag cacagagcag tttgttgagt ttcacagcgt caaacttgaa aaaggcaacg
     2701 tagccacaga ctggacacca gcaccggagg atgtggagag tgcggttagt gctgtttcgg
     2761 ctgatttaac gagttataaa caaactcaag cgg
//
LOCUS       DANMBQ010000213         2759 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.216, whole genome shotgun sequence.
ACCESSION   DANMBQ010000213 DANMBQ010000000
VERSION     DANMBQ010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2759)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2759)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2759
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.216"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            73..252
                     /locus_tag="PXE92_002619"
     CDS             73..252
                     /locus_tag="PXE92_002619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761801.1"
                     /translation="MFKEKGYDEFLAEKIRLGLEDMQSGNGLSLDESKARTKQLIERK
                     ARELANFEQENIIYG"
     gene            245..532
                     /locus_tag="PXE92_002620"
     CDS             245..532
                     /locus_tag="PXE92_002620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5761802.1"
                     /translation="MAKTLRISSRAQNDIEEILASVIEYTGFESSGIRLQEDIYQKFE
                     TIAYMPSAAGRLREDGTREAFTRRYRIVYTELENEVWIITIIHSSRLYPRI"
     gene            complement(658..2745)
                     /locus_tag="PXE92_002621"
     CDS             complement(658..2745)
                     /locus_tag="PXE92_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL5761803.1"
                     /translation="MLPVSAAVLSVLAANAVAQTASTDAVVLDTVTVTDNQGLKVQSN
                     VVTTKKKDESTQTDLRGLLKDEPAISLGGGNGTSQYLYIRGMGQNSIDVKVDNTYSDS
                     QILYHQGRHMLDPALVKIVSVQKGAGSASAGIGQTNGAVIAKTVDALDLLKNSDKNFG
                     AKLGTGFSTNHAHNFNATLYGKGEIFDALVSGNLVRDRDYKGGKDYVNQFGTNRVPYS
                     ALDKTSFLAKLGATLGDHRFVLSHSSERNEGQRLVREEFDVAPNGTKVSPYNRLTVER
                     QAPANRRITVQRTNLEWTGKNLGFAQEATANVYQLVQGRWSENETGNGYAGGVDYATK
                     TKIVTHGANVNFDSALHENVLLKYGVNYRHQEAKPHTKFNPLVKNQEKTDTGVYVEAI
                     TAPVDKVTLTTGVRYDHFKFKAMDGKERSNGAFSPSVGLIYEPIEHLSLSASHNYATR
                     SPRLYDALTAHGNRKIVSIGSNTKAEKARNTEIGFNYNNGTFSFDGSYFWQDIKDALG
                     GGRDSHNPNNELIMNLGKIKNRGYELNAGYHNGGFTARIGVAHSKPRFYSPTIWEVNR
                     QTGKREEKPLLSTNPEYASAIGRTWTASLSYRFEQPNLEVGVHHRIVEKVKPEDNFFV
                     TGGTLQTNTGTGKDGYNVTDITLNWKPLKDDSVNVNFAVDNVANKKYNAHGQRGQLSA
                     RGREFRAGVNYTF"
BASE COUNT          806 a          546 c          516 g          891 t
ORIGIN      
        1 aaataagtta atttgacaac tcaaaattaa aagcagacaa tgcttttaat tatatcttaa
       61 taggagcaga ttatgtttaa agagaaaggc tatgatgaat tcctagcaga aaaaattcgc
      121 cttggcttag aagatatgca atcaggtaat ggtctttcac tcgatgaatc aaaagcacga
      181 accaaacaac tgattgaacg taaagcaaga gaactcgcaa actttgaaca agagaatatc
      241 atttatggct aaaacattac gaattagcag tagagctcaa aatgatattg aagaaatttt
      301 agcgagcgta attgaatata ctggttttga aagtagtgga attcgcttac aagaagatat
      361 ttaccaaaaa tttgagacta tcgcttatat gccctctgcg gctggacgtt taagagaaga
      421 tggcacaaga gaagcattca ctaggcgtta tcgtattgtt tataccgaat tagaaaatga
      481 agtgtggatt attaccatta ttcatagtag cagactttat ccacgcattt aaataacaaa
      541 cgactaaaat agtcggtttt ttatttgcaa aaaattaata aaatatcacc gcttgtaagc
      601 tccataaaaa aaagcccgat tgtaacatcg ggcgttttag tctgaattta agtcagatta
      661 gaatgtgtag ttcacacctg cacggaattc acgtccacga gctgataatt gaccacgctg
      721 accgtgtgcg ttgtattttt tattcgccac gttatccact gcgaagttta cattcacgct
      781 atcatcttta agtggtttcc agtttaaggt gatatcagtt acattgtagc cgtctttgcc
      841 tgtaccggta tttgtttgta atgttccgcc cgtaacgaag aaattatctt caggtttcac
      901 tttctcaaca atacggtggt gtacgccaac ctctaaattt ggttgttcaa agcgatagct
      961 taaagaagct gtccaagtac gaccgatagc tgaggcgtat tctgggttag tacttaataa
     1021 tggtttttct tcccgcttac cagtttgtct gtttacttcc caaatagttg gtgagtagaa
     1081 acgcggtttg ctgtgtgcaa caccaatacg agcagtaaaa ccaccattat ggtaacctgc
     1141 atttaactca taaccacggt ttttaatttt acctaggttc ataattaact cattattagg
     1201 attatggcta tcacgaccac cacctaatgc atcttttata tcttgccaga aatagctacc
     1261 atcaaaactg aatgtaccat tgttatagtt gaaaccgatt tcagtattac gagctttctc
     1321 cgctttagta ttgctaccaa tactaacgat ttttctattt ccgtgagccg ttagtgcatc
     1381 gtataaacga gggctacgag ttgcatagtt gtggcttgca cttaagctta aatgttcaat
     1441 tggctcatag ataagcccaa cgcttgggct gaatgcacca ttactacgct ctttaccatc
     1501 cattgctttg aatttgaagt ggtcgtaacg tacaccggta gttaaagtta ctttatctac
     1561 tggagcagta attgcttcaa catacacgcc ggtatcggtt ttctcttggt ttttcacaag
     1621 agggttaaat ttagtgtgtg gtttagcttc ttggtggcga tagttcacac cgtattttaa
     1681 taatacattt tcgtgaaggg cagaatcaaa gtttacgttt gcaccgtggg ttactatttt
     1741 agttttggtt gcataatcta caccaccagc ataaccatta cctgtttcat tctcagacca
     1801 acgaccttgt actaactgat acacgttagc tgttgcttct tgagcaaaac ctaagttttt
     1861 accagtccat tctaagttag ttctttgaac cgtaattcta cggttagctg gagcttggcg
     1921 ttctacagtt aagcggttgt acggagaaac ctttgtgccg ttaggtgcta catcaaattc
     1981 ttcacgcact aaacgctgac cttcatttcg ctcacttgaa tggcttaata caaaacggtg
     2041 atctcccaat gttgcaccta atttagctaa aaagctggtt ttatctagtg cactatacgg
     2101 aacacggttt gtgccgaatt ggtttacgta atctttaccg cctttatagt cgcgatctct
     2161 cacaagatta cctgagacta aagcatcaaa gatttcgcct ttaccatata aggttgcatt
     2221 gaaattgtga gcgtggtttg tgctgaagcc agtacctaat tttgcaccga agtttttatc
     2281 gctgtttttt aataaatcta atgcatcaac ggttttagca attactgcac cattagtttg
     2341 accaataccg gctgaagcac tgcctgcacc tttttgtaca gaaacaattt tcaccaatgc
     2401 cggatctaac atatgacgac cttggtgata caaaatttgg ctatctgagt aagtgttatc
     2461 tacttttaca tcaattgagt tttgacccat accacgaata tagagatatt gtgatgtacc
     2521 gttaccacca cctaagctaa ttgccggctc atcttttaat aaaccacgca aatcggtttg
     2581 ggtgctttca tcttttttct tagttgttac cacattgctt tgtactttta aaccttgatt
     2641 atctgttacg gtaacagtat ctaatactac tgcatctgtt gaagcagttt gagccactgc
     2701 attagcagca agtacgctca ataccgcagc agaaacaggg agcaatttga agcttttca
//
LOCUS       DANMBQ010000214         2691 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.217, whole genome shotgun sequence.
ACCESSION   DANMBQ010000214 DANMBQ010000000
VERSION     DANMBQ010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2691
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.217"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            176..1594
                     /gene="leuC"
                     /locus_tag="PXE92_002622"
     CDS             176..1594
                     /gene="leuC"
                     /locus_tag="PXE92_002622"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDL5761804.1"
                     /translation="MQQAKTLYQKLFDSHVVYEAEGETPIIYINRHLIHEVTSPQAFD
                     GLRVAGRQVRQVSKTFGTMDHSISTQVRDVQQLEGQAKIQVLELEKNCEETGIPLFDI
                     TKKQQGIVHVMGPEQGLTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTL
                     KQARAKSMKVEVRGKVNPGITAKDIVLAIIGKTTMAGGTGYVVEFCGEAIRDLSMEGR
                     MTVCNMAIEFGAKAGIVAPDETTFAYLKDRPNAPKGQDWEDAIEYWKTLKADEGAVYD
                     AEVILEAKDIAPQVTWGTNPGQVIGIDDVIPNPEDMADPVTRASAEKALAYIGLEAHT
                     DMKDVPVDQVFIGSCTNARIEDLRAAAAVMKGRKKADNVKRILVVPGSGLVKEQAEKE
                     GLDKIFIEAGAEWRNPGCSMCLGMNDDRLGEWERCASTSNRNFEGRQGRNGRTHLVSP
                     AMAAAAAVFGKFMDIRKVSLNA"
     gene            1607..2209
                     /gene="leuD"
                     /locus_tag="PXE92_002623"
     CDS             1607..2209
                     /gene="leuD"
                     /locus_tag="PXE92_002623"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDL5761805.1"
                     /translation="MAGIKQHSGLVVPLDAANVDTDAIIPKQFLQAITRVGFGKHLFH
                     EWRYLDAEETQINPDFVLNFPQYQGATILLARKNLGCGSSREHAPWALADYGFKVMIA
                     PSFADIFYNNSLNNHMLPIKLTEEEVEEIFQWVWANEGKQIHVDLEAMTVTVGEKVYT
                     FELDEFRRHCLLNGLDNIGLTLQHEAAIAAYEKNIPAFLR"
     gene            complement(2281..>2691)
                     /locus_tag="PXE92_002624"
     CDS             complement(2281..>2691)
                     /locus_tag="PXE92_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761806.1"
                     /translation="CTPSPQSNSTKQQAQVGYLKQNISQAELNNPKDFKRYSYYCKNF
                     ATGSSSYLATYFPLWSESRKQENFGIYFQLDGGKVYPFDHLANISLNARATKFEVRYR
                     SYQPIEGSFVELVAREFTSTYYKNNVPWLECREG"
BASE COUNT          794 a          557 c          604 g          736 t
ORIGIN      
        1 tatttttagg cttatttagc agaataaaaa cccttattta gcataaaaat actgttttac
       61 tttcattttt ttaatcgtta tattcactcc atatcagcaa gcggtcattt ttgcaaaatt
      121 ttttgcaaat ttaaccgctt gtattaaaag ttaccctttt gagttggaac attttatgca
      181 acaagccaaa accctatatc aaaaactatt cgactcacac gttgtgtatg aagccgaagg
      241 cgaaacgccg attatttata ttaaccgcca cttaattcac gaagttacca gcccgcaagc
      301 gtttgacggc ttgcgtgttg ccggtcgcca agttcgccaa gtcagtaaaa ccttcggcac
      361 aatggaccac agtatttcaa cccaagtgcg tgatgtacag caacttgaag ggcaagcgaa
      421 aattcaagta ttagaattag aaaaaaactg cgaagaaacc ggtatcccac tgtttgacat
      481 cactaaaaaa caacaaggta tcgttcacgt aatggggccg gagcaaggct taactttacc
      541 cggtatgacc attgtatgtg gtgactcgca caccgccact cacggggcct ttggtgcgtt
      601 agccttcggt atcggtactt ccgaagtgga acacgtttta gccacccaaa ccttaaaaca
      661 ggcccgtgca aaaagtatga aagtggaagt ccgtggcaaa gtaaacccgg gcattaccgc
      721 aaaagatatt gtgcttgcga tcatcggtaa aacaactatg gctggcggta caggctatgt
      781 agtggaattt tgtggcgaag caattcgtga tctttcaatg gaagggcgaa tgacagtgtg
      841 taatatggcg attgagtttg gtgcgaaagc cggtattgtt gccccggatg aaaccacgtt
      901 cgcttacttg aaagaccgcc caaatgcacc aaaaggtcaa gattgggaag atgccattga
      961 atattggaaa accctcaaag ccgatgaggg tgcagtttac gatgcggaag tgatcttaga
     1021 agcaaaagac attgctccac aagtgacttg gggaaccaac ccggggcagg tgatcggtat
     1081 tgatgatgta attccaaatc cggaagatat ggccgatcct gttactcgtg cctctgcgga
     1141 aaaagcctta gcttacatcg gcttagaagc ccatacagat atgaaagatg taccggttga
     1201 tcaagtcttt attggttctt gtactaatgc tcgtattgaa gatttgcgtg ctgcggcagc
     1261 agtaatgaaa gggcgtaaaa aagccgacaa tgtaaaacgt attctcgttg tgccaggttc
     1321 aggtttggta aaagagcaag cagaaaaaga gggcttggat aaaatcttca ttgaagccgg
     1381 tgcagaatgg cgtaacccgg gttgctcaat gtgtttggga atgaacgatg accgcttggg
     1441 cgaatgggaa cgttgtgcct ctacgtctaa ccgtaacttt gagggcagac aaggacgtaa
     1501 cggtcgtacc cacttagtca gcccggcaat ggcggctgcg gcggcggtgt tcggtaaatt
     1561 tatggatatt cgcaaagtgt cattaaacgc ataataggag gaaaaaatgg caggtattaa
     1621 acaacattca ggcttggtcg ttcctcttga tgcagcgaac gtagacaccg atgcaatcat
     1681 tccaaaacaa tttttgcaag ccattactcg agtcggcttt ggtaagcacc ttttccacga
     1741 atggcgttat ttagatgcgg aagagactca aatcaacccc gatttcgtac tgaacttccc
     1801 acaatatcaa ggtgcaacca ttttactcgc ccgtaaaaat ttaggctgtg gctcttctcg
     1861 tgagcacgcc ccttgggcat tggcagatta cggttttaaa gtaatgatcg ccccaagttt
     1921 tgcggatatt ttctacaata acagcttaaa taaccatatg ttgccgatta aattaaccga
     1981 agaggaagtc gaagagatct tccaatgggt gtgggcaaat gaaggaaaac agatccacgt
     2041 tgatttagaa gcgatgactg tgactgttgg cgagaaagtt tatacctttg agttagacga
     2101 attccgccgc cactgcttat taaacggttt ggataatatc ggcttaaccc tacaacacga
     2161 agctgcgatt gctgcttatg agaaaaacat tccggcattt ttacgctaat taaaatacaa
     2221 aaaaacggct aacatcttta aggcgttagt cgttttcttt ttagccattt tctttggcaa
     2281 ttagccttct cggcactcta accaaggcac attatttttg taataagttg aagtaaactc
     2341 tcgtgccact aactctacaa aactgccttc aatcggctga taagaacgat aacgcacttc
     2401 aaattttgtt gctcttgcat tcaaactgat gttggcaaga tggtcgaacg gataaacctt
     2461 tccgccatca agttgaaaat agataccaaa attctcttgc ttacggcttt cagaccaaag
     2521 tggaaaatag gttgccaaat atgaactgct gcctgttgca aaattcttac aataatagct
     2581 ataacgctta aaatctttcg gattattcaa ttccgcttgg ctgatattct gtttcaaata
     2641 tccaacctgt gcttgttgct tagttgagtt tgattgtggt gagggcgtac a
//
LOCUS       DANMBQ010000215         2623 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.218, whole genome shotgun sequence.
ACCESSION   DANMBQ010000215 DANMBQ010000000
VERSION     DANMBQ010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.218"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            161..451
                     /locus_tag="PXE92_002625"
     CDS             161..451
                     /locus_tag="PXE92_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDL5761807.1"
                     /translation="MALRPLHDKVILKREEVETKSAGGIVLTGSAATKSTRGKVIAVG
                     TGRILDNGSVQPLAVKVGDVVIFNEGYGVKTEKIDGEEVLILAEHDILAIVE"
     gene            520..2160
                     /gene="groL"
                     /locus_tag="PXE92_002626"
     CDS             520..2160
                     /gene="groL"
                     /locus_tag="PXE92_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608625.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDL5761808.1"
                     /translation="MAAKDVKFGNDARVKMLKGVNILADAVKVTLGPKGRNVVLDRAY
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNE
                     GLKAVAAGMNPMDLKRGIDKAVAAVVEELKAISKPCETSKEIEQVGTISANSDSTVGQ
                     LIAQAMEKVGKEGVITVEDGTGLEDALDVVEGMQFDRGYLSPYFINKPEAGTVELENP
                     YILLVDKKVSNIRELLPVLEGVAKAGKPLLIIAEDIEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEELGQAKRVVISKDNTTIID
                     GIGDETQIKGRVAQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVAMKEK
                     KDRVDDALHATRAAVEEGIVPGGGVALVRAANKVADTLKGDNEEQNVGIKLALRAMEA
                     PLRQIVANAGEEASVVARNVKEGSGNYGYNAGTEQYGDMLEMGILDPTKVTRSALQFA
                     ASIAGLMITTECMITDLPKEEKLDPAAMGGMGGMGGMM"
     gene            complement(2285..2611)
                     /locus_tag="PXE92_002627"
     CDS             complement(2285..2611)
                     /locus_tag="PXE92_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5339 domain-containing protein"
                     /protein_id="HDL5761809.1"
                     /translation="MLKRILGITLCTILVSSNAIASVKTSSLTVAKPTLSKNLPTECE
                     KMFNTANKLVSDAERQPGTHTQVLKMKNKLSLTKQQILKMDSELQQKSCEKGLTALNS
                     LKQKHQ"
BASE COUNT          829 a          428 c          624 g          742 t
ORIGIN      
        1 ttcttaggta tatagtttta tcaaaaatgg tcaaatttgt aaaaaatttt acaaatttga
       61 ccgcttgcac ttgaaactct aaaatctgcc tttatattgt taggcgttac gcattttgcg
      121 tgaagtttta tttattcatt tttaagaaaa ggaacatatt atggcacttc gtccattaca
      181 cgataaagtt attttaaaac gtgaagaagt tgaaacaaaa tcggcaggcg gtattgtttt
      241 aaccggttcg gcagcaacaa aatcaacccg tggcaaagta attgcagtag gaacaggtcg
      301 cattttagac aatggttctg ttcagccttt agcagttaaa gtgggcgatg tagtgatttt
      361 taacgaaggc tacggcgtaa aaaccgagaa aattgacggc gaagaagtgc taattttagc
      421 agagcacgat attttggcga ttgtagaata atttcgttct gcacaagcgg ttaaaaaagc
      481 aaaatttttt acatatttca aatacaaagg atttagaaaa tggcagcaaa agacgtgaaa
      541 tttggtaacg atgcacgcgt aaaaatgtta aaaggcgtga atattttagc cgatgcggta
      601 aaagtaactt taggtccgaa aggtcgtaat gtggtgttag atcgtgctta tggtgcacca
      661 acgattacaa aagacggtgt gtcggttgcc cgtgaaatcg aattagaaga taaatttgaa
      721 aatatggggg ctcaaatggt gaaagaggtt gcctctaaag ccaatgatgc cgccggtgac
      781 ggtacaacta ccgcaactgt attagctcaa gcgattgtaa acgagggctt aaaagcagtg
      841 gctgcgggta tgaacccaat ggatttaaaa cgtggtatcg ataaagcggt tgcagcagtg
      901 gttgaagagt taaaagcgat ttcaaaaccg tgcgaaacct caaaagaaat tgagcaagta
      961 gggacgattt ctgcaaactc agattcaaca gtcggtcaat taattgctca agcaatggaa
     1021 aaagtgggca aagagggcgt gattactgtt gaagacggta caggtttaga agatgcatta
     1081 gacgtggttg agggtatgca atttgaccgt ggttacttat cgccatactt tatcaataaa
     1141 ccggaagccg gtacggttga gttagaaaac ccatatattc ttttagtgga taaaaaagtg
     1201 tctaacattc gtgaattatt accggtgtta gaaggtgttg caaaagcagg taaaccgtta
     1261 ttaattattg ccgaagatat tgaaggcgag gcgttagcta ccttagtggt gaacactatg
     1321 cgtggtatcg tgaaagtggc ggcagtgaaa gcacctggct ttggtgatcg ccgtaaagca
     1381 atgttacaag atattgcgat cttaactgca ggtactgtga tttctgaaga gatcggtatg
     1441 gagcttgaaa aagcaaccct tgaagagctt ggtcaagcaa aacgtgtggt tatcagcaaa
     1501 gataacacca caattattga cggtattggt gatgaaactc aaatcaaagg tcgtgtagca
     1561 caaatccgcc aacaaatcga agattcaact tcagattacg acaaagaaaa actacaagag
     1621 cgtgtagcaa aattagccgg tggtgttgcg gtaattaaag taggtgcggc aactgaagtg
     1681 gctatgaaag agaaaaaaga ccgtgttgat gatgctcttc acgcaacccg tgctgcggtg
     1741 gaagaaggta ttgtaccggg gggcggagtt gctttagtgc gtgcagccaa caaagtggct
     1801 gatacactaa aaggcgataa cgaagagcaa aatgtaggta tcaaacttgc cttgcgtgca
     1861 atggaggctc cattacgcca aatcgttgcc aatgcaggtg aagaagcctc agttgtagcc
     1921 cgcaacgtga aagaaggttc aggcaactac ggctataacg caggtacaga gcagtacggc
     1981 gatatgcttg aaatgggaat tttagaccca actaaagtga ctcgttcagc acttcaattc
     2041 gcggcttcta ttgcaggttt aatgatcact acagaatgta tgattaccga tctgccaaaa
     2101 gaagagaaat tagatcctgc cgcaatgggc ggtatggggg gaatgggcgg aatgatgtaa
     2161 ttgcccattg agtgaacaaa agctactgaa attaattcag tagctttttt gttggtaaca
     2221 agtggttaaa tttatgctat tttttgcaaa taaaaaacca agcaagtaag cttggtttta
     2281 gcgtttattg atgtttttgt ttaaggctgt ttagtgctgt taaacctttc tcacaacttt
     2341 tttgctgtaa ttcagaatcc atttttagga tttgttgctt tgttaaagaa agtttatttt
     2401 tcatttttag cacttgagta tgagtaccag gctgtctttc tgcatcagag accaatttat
     2461 ttgccgtgtt aaacattttc tcacattcag ttggcaaatt tttacttaaa gtaggttttg
     2521 caactgtaag tgatgaggtt ttaacacttg ctatagcatt actggaaacc aatatggtac
     2581 aaagtgttat tcctaaaatt ctttttagca tgcgttctcc aca
//
LOCUS       DANMBQ010000216         2612 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.219, whole genome shotgun sequence.
ACCESSION   DANMBQ010000216 DANMBQ010000000
VERSION     DANMBQ010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2612
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.219"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            22..834
                     /locus_tag="PXE92_002628"
     CDS             22..834
                     /locus_tag="PXE92_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5761810.1"
                     /translation="MGRPELERAVLSVQNQTYPCKHYVFVDGEKYHQQAADILKNFPS
                     VIVTYLPMNTGADGWVNSSINAIAPFLVKEDIICYLDDDNWFEPTHVESGVHALLEMQ
                     SDYAYSLRNFYDLDGEFLCIDTIESLGEYNCVYQEPLECNYQLGGVKGVLSINLNDCQ
                     HIDTNCYFIRSEIARLISTAWYTGIHNDRNVYKKLQELALKGNCTKKVTVNYTLDTRK
                     YYGSVFNELLEEPFLLSEYDAYQFTNEVIKFHSEESLKAWGGCLIWEQNNGS"
     gene            966..1664
                     /gene="aphA"
                     /locus_tag="PXE92_002629"
     CDS             966..1664
                     /gene="aphA"
                     /locus_tag="PXE92_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HDL5761811.1"
                     /translation="MTAATMFASLIAFSAQAGGPKVAYTQPGIDMRTHEAQQAPIHWV
                     SIEQIKESIKDLPPMAVSFDIDDTVAATSGCFHYGKQKYSPDDFSYLKNQDFWDEINA
                     GCDKYSLPKQVAINLIKMHQERGDQVYLITGRTAGKNEQVTTIMQKYLGIKNMQPVNF
                     MGGKAHSTKYDKTPAIIEHKVQIHYGDSDDDILAAREAGIRGIRILRAANSNYTPFPQ
                     AGGYGEEVVVNSSY"
     gene            1845..2606
                     /gene="udp"
                     /locus_tag="PXE92_002630"
     CDS             1845..2606
                     /gene="udp"
                     /locus_tag="PXE92_002630"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HDL5761812.1"
                     /translation="MSEVFHLGLTKAMLKGAKIAIVPGDPARSERIAKKMDNPEFLAS
                     TREFTSWLGYLDGEPVVVCSTGIGGPSVSICVEELAQLGVRTFLRIGTTGAIQEHINV
                     GDILITTGAVRLDGASQHFAPMEYPAVANFECTNALYAAAVESGVTPYVGITASSDTF
                     YPGQERYDTFTGKIYRHFQGSLKQWQDLNVMNFEMESATLFTMCSALGLRAGMVAGVI
                     VNRTQQEIPNEATIHDTEHKAVSVVVEAARKLIKG"
BASE COUNT          829 a          426 c          552 g          805 t
ORIGIN      
        1 gtagctgtta tcagttcaac aattggtcgt cctgaattag aaagagctgt tttaagcgta
       61 caaaatcaga cttatccttg taaacattat gtttttgttg atggagagaa atatcaccaa
      121 caagcggctg atattttaaa gaattttcca agtgttattg ttacttatct cccaatgaat
      181 accggggctg atggttgggt aaatagcagc attaatgcaa ttgcaccatt tttagtgaaa
      241 gaagatatta tttgttatct ggatgatgat aattggtttg aacctactca cgttgaatct
      301 ggtgtgcatg ctttattaga aatgcaatct gattatgctt actctttacg taatttttat
      361 gatttagatg gcgagttttt gtgtattgat acgattgaat cgttgggaga atataattgc
      421 gtttatcaag aaccattaga atgtaattat caattaggtg gtgttaaagg tgttttatca
      481 ataaatctga atgattgtca gcatattgat acgaattgct attttattcg tagtgagata
      541 gctcgcctta tcagtacggc ttggtacaca ggtattcata atgatagaaa tgtatataaa
      601 aaattacaag aattggcact aaaaggaaat tgtacaaaga aagttacggt taattatact
      661 cttgatacac gtaaatatta tggatcagta tttaatgaat tattagagga gccattttta
      721 ttaagcgaat atgatgccta tcaatttacg aatgaggtga ttaaatttca ttcagaagaa
      781 agccttaaag cttggggagg ttgcttgatt tgggaacaga acaatggctc ataagcgtta
      841 agcgtaatcg tttgcttgtg atcatattca caaaataagg tttttgtatt agctaagagt
      901 gcctaataag attaaaatag gtatggttaa tcatatggag gtattttata aaatttacat
      961 taaaaatgac ggcagcgaca atgtttgcat ctcttattgc tttttcagca caagcaggcg
     1021 gaccaaaagt agcttatacc cagccgggaa ttgatatgcg aacacatgaa gcacagcaag
     1081 cgccaattca ttgggtatct attgagcaaa ttaaagaaag catcaaagat ttacccccta
     1141 tggcggtaag ttttgatatt gatgatactg ttgctgcaac tagcggttgc ttccactacg
     1201 gaaagcaaaa atattcgcca gacgatttca gctacttaaa aaatcaagat ttttgggacg
     1261 aaattaatgc tggctgtgat aaatattctt tgccaaagca agttgctatt aatttaataa
     1321 aaatgcacca agaacgtggt gatcaagttt atttaattac ggggcgtacc gcaggtaaaa
     1381 atgaacaagt tacaacgatt atgcaaaagt atcttggtat taaaaatatg caaccggtaa
     1441 attttatggg ggggaaagca cattcaacaa aatatgataa aacccctgcg attattgaac
     1501 ataaggtgca aattcactat ggtgacagtg atgatgatat cttagctgcc cgtgaagccg
     1561 gtattcgagg tattcgtata cttcgtgcag caaattctaa ttatacgcca ttccctcagg
     1621 ccggaggata tggtgaagaa gttgttgtca attcaagtta ttaatttctt agtctgaaat
     1681 atggccacca ttgcgtggcc atcatttttt atttatataa tgacgaaacc gtttaccttt
     1741 gatctagttc acaaaatcaa actttgcttg caaaaaattg tcgtaaatta accgcttgct
     1801 aagatagaat ggctcatatc cagttagata aaaaggagat aaaaatgtct gaagtatttc
     1861 atttaggttt aaccaaagcc atgctcaaag gtgcaaaaat tgcaatcgtt ccgggcgatc
     1921 cggctagaag tgaacgtatt gccaaaaaaa tggacaaccc agagttttta gcctcaaccc
     1981 gtgaatttac ctcttggtta ggttatttag atggcgaacc ggtggtggtt tgttcaaccg
     2041 gtattggcgg accgtcggtg tcgatttgtg tggaagagtt agcacagtta ggtgttcgca
     2101 cattcttacg cattggcaca acaggtgcaa ttcaagagca tattaatgta ggcgatattt
     2161 taattaccac cggagcggtg cgtttagatg gtgcgagcca acattttgca ccaatggaat
     2221 atcctgcagt agcgaatttt gaatgtacta atgctcttta tgcagcagca gtggaatcag
     2281 gcgttacacc ttatgtgggg attacagctt catcagacac tttctacccg gggcaagaac
     2341 gttacgacac tttcaccggc aagatctatc gtcatttcca aggttcatta aaacagtggc
     2401 aagatctcaa tgttatgaat tttgaaatgg aatccgccac tctctttacg atgtgttcgg
     2461 cattaggctt gcgagcaggt atggttgctg gtgtaattgt aaaccgcact caacaagaga
     2521 ttccgaatga agcaaccatt cacgacaccg aacataaagc cgtttcggta gtagtggaag
     2581 cggcaagaaa attaattaaa ggctaatctt ta
//
LOCUS       DANMBQ010000217         2519 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.221, whole genome shotgun sequence.
ACCESSION   DANMBQ010000217 DANMBQ010000000
VERSION     DANMBQ010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2519
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.221"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            85..1560
                     /gene="msr(E)"
                     /locus_tag="PXE92_002631"
     CDS             85..1560
                     /gene="msr(E)"
                     /locus_tag="PXE92_002631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000052512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F type ribosomal protection protein Msr(E)"
                     /protein_id="HDL5761813.1"
                     /translation="MSLIIKARNIRLDYAGRDVLDIDELEIHSYDRIGLVGDNGAGKS
                     SLLKVLNGEIVLAEATLQRFGDFAHISQLGGIEIETVEDRAMLSRLGVSNVQNDTMSG
                     GEETRAKIAAAFSQQVHGILADEPTSHLDLNGIDLLIGQLKAFDGALLVISHDRYFLD
                     MVVDKIWELKDGKITEYWGGYSDYLRQKEEERQHQAVEYELMMKERERLESAVQEKRQ
                     QANRLDNKKKGEKSKNSTESAGRLGHAKMTGTKQRKLYQAAKSMEKRLAALEDIQAPE
                     HLRSIRFRQSSALELHNKFPITADGLSLKFGSRTIFDDANFIIPLGAKVAITGSNGTG
                     KTSLLKMISERADGLTISPKAEIGYFTQTGYKFNTHKSVLSFMQEECEYTVAEIRAVL
                     ASMGIGANDIQKNLSDLSGGEIIKLLLSKMLLGKYNILLMDEPGNYLDLKSIAALETM
                     MKSYAGTIIFVSHDKQLVDNIADIIYEIKDHKIIKTFERDC"
     gene            1616..2500
                     /locus_tag="PXE92_002632"
     CDS             1616..2500
                     /locus_tag="PXE92_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mph(E) family macrolide 2'-phosphotransferase"
                     /protein_id="HDL5761814.1"
                     /translation="MTIQDIQSLAEAHGLLITDKMNFNEMGIDFKVVFALDTKGQQWL
                     LRIPRRDGMREQIKKEKRILELVKKHLSVEVPDWRISSTELVAYPILKDNPVLNLDAE
                     TYEIIWNMDKDSPKYITSLAKTLFEIHSIPEKEVRENDLKIMKPSDLRPEIANNLQLV
                     KSEIGISEQLETRYRKWLDNDVLWADFTQFIHGDLYAGHVLASKDGAVSGVIDWSTAH
                     IDDPAIDFAGHVTLFGEESLKTLIIEYEKLGGKVWNKLYEQTLERAAASPLMYGLFAL
                     ETQNESLIVGAKAQLGVI"
BASE COUNT          859 a          413 c          540 g          707 t
ORIGIN      
        1 gtatgctttt agtgcatagt ttccagttat aacttaattg actagctatt aaaaatttca
       61 agagctaaac aggagtaaat aaaaatgagt ttaattatta aagcgagaaa catacgcttg
      121 gattatgctg ggcgtgatgt tttggatatt gatgaattgg aaattcactc ttatgaccgt
      181 attggtcttg tgggtgataa cggagcagga aagagtagtt tactcaaagt acttaatggc
      241 gaaattgttt tagccgaagc gacattacag cgttttggtg attttgcaca tatcagccaa
      301 ctgggcggaa tcgaaataga aacggtcgaa gaccgggcaa tgttatctcg ccttggtgtt
      361 tccaatgtac aaaacgacac aatgagtggc ggagaggaaa ctcgtgcaaa aattgctgcc
      421 gcattttccc aacaagtaca tggcattcta gcggatgaac caaccagcca ccttgatctc
      481 aatggaatag atctacttat tggtcaactt aaagcatttg atggagcatt acttgttatc
      541 agtcatgacc gatattttct tgatatggtt gtagacaaga tatgggagtt aaaagacggt
      601 aaaattacgg aatattgggg tggttactcg gattacttgc gtcaaaaaga agaagagcga
      661 caacaccaag ccgtagaata tgagctgatg atgaaggaac gggagcgatt agaatctgct
      721 gtgcaagaaa aacgccagca agctaatcga ttagacaata agaaaaaagg agaaaaatcc
      781 aaaaactcta ccgaaagtgc tggacgactt gggcatgcaa aaatgactgg caccaagcaa
      841 agaaaactgt atcaggcagc taagagtatg gaaaagcgtt tggctgcatt agaagatatt
      901 caagcaccag agcatttgcg ttctattcgt tttcgtcaaa gttcagccct agaactgcac
      961 aataagttcc cgattacggc agatggtctg agcttaaaat ttggtagccg tactatcttt
     1021 gatgacgcta actttataat accgcttggc gctaaagtcg ctataactgg atcgaatgga
     1081 acagggaaaa cgtccttgtt aaaaatgata tcagaacgtg ctgatggatt aaccatatct
     1141 ccaaaagctg aaattggcta ctttacacaa acaggatata aatttaacac gcataaatct
     1201 gtgctctcct ttatgcagga agagtgcgag tacacagttg cggaaattcg tgcagtattg
     1261 gcttcaatgg ggatcggagc gaatgatatt caaaaaaact tatccgactt atcgggaggt
     1321 gaaatcatca aactgctttt atccaaaatg cttttaggaa aatataatat tttgcttatg
     1381 gatgaaccag gaaactatct tgacctaaaa agtattgccg cattagaaac aatgatgaag
     1441 tcctatgcag gaactattat cttcgtatct catgacaagc aattggtcga taatattgct
     1501 gacattatct acgagatcaa agaccacaaa atcatcaaga cttttgagag agattgttaa
     1561 tgatagccaa tctaatccga acattaatta ttgaactctt taaaggaaat taaaaatgac
     1621 aattcaagat attcaatcac ttgctgaagc acacggcttg ttgattacgg acaaaatgaa
     1681 tttcaatgaa atgggcattg attttaaggt cgtttttgct cttgatacaa aggggcaaca
     1741 atggttgctg cgtattcctc gtcgtgatgg catgagggaa caaatcaaga aagaaaaacg
     1801 cattttagaa ttggtaaaaa aacatctttc tgtagaggtt cctgattgga gaatttcatc
     1861 tacagaatta gtggcttatc ccatacttaa agataatcct gttttaaatt tggatgctga
     1921 aacctatgaa ataatttgga atatggacaa agatagcccg aaatacataa catctttggc
     1981 aaaaacctta tttgaaatcc atagtattcc tgaaaaagaa gttcgggaaa atgatttgaa
     2041 aattatgaaa ccttcagatt taagacctga aatagcaaac aatttgcagt tagtaaaatc
     2101 tgaaattggt ataagtgagc aattggaaac ccgctacaga aaatggttgg ataatgatgt
     2161 tctatgggca gatttcaccc aatttataca tggcgattta tatgctgggc atgtactagc
     2221 ttcaaaggat ggagctgttt caggcgttat tgattggtca acagcccata tagatgaccc
     2281 agcgattgat tttgctgggc atgtaacttt gtttggagaa gaaagcctca aaactctaat
     2341 catcgagtat gaaaaactag ggggtaaagt ttggaataaa ctatatgaac agactttaga
     2401 aagagcagcg gcctctcctt tgatgtatgg tttatttgcc ttagaaactc aaaatgaaag
     2461 ccttatcgtt ggagcaaaag ctcagttggg agttatataa tttaaaaata tgattgctg
//
LOCUS       DANMBQ010000218         2505 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.222, whole genome shotgun sequence.
ACCESSION   DANMBQ010000218 DANMBQ010000000
VERSION     DANMBQ010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2505
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.222"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..439
                     /locus_tag="PXE92_002633"
     CDS             <1..439
                     /locus_tag="PXE92_002633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL5761815.1"
                     /translation="VHNHIPAYLDLDLSPYFNSGVLLINNILWKKYSVCDELVTINEK
                     IVNLTYGDQDALNIYFKGGWGALPIEYNYQVDAILELVLRREQEELARKNGYLDVIPK
                     IIHYTSKFKPWKKELHTMQISTRKKYWFYYHLEWNDILEQHQK"
     gene            complement(485..772)
                     /locus_tag="PXE92_002634"
     CDS             complement(485..772)
                     /locus_tag="PXE92_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5761816.1"
                     /translation="MKNDKPIECEGCNTFDVGSILDNSETVATIQRTYESENEAKAAL
                     EKFTQKARDVESEPCEISSEITPIESGFELVAHFKFSCQAEVVIFQLGTRF"
     gene            892..1305
                     /locus_tag="PXE92_002635"
     CDS             892..1305
                     /locus_tag="PXE92_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PACE efflux transporter"
                     /protein_id="HDL5761817.1"
                     /translation="MTAWERVFHALLFECFAIIFTVILTSWLTSHRMVDLTAVIVMIS
                     VIAMVWNVIFNWGFDKVFTGERVQRGLGIRILHSFLFEGGLLVFTIPLVMYMLDIGWW
                     QAFVMDIGMTLFVLVYSVVFNWVYDHLRLRWVKSG"
     gene            1390..2382
                     /gene="mglB"
                     /locus_tag="PXE92_002636"
     CDS             1390..2382
                     /gene="mglB"
                     /locus_tag="PXE92_002636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL5761818.1"
                     /translation="MKRTILSAFALSVICGVNLSYAQSESRVGVTIYKYDDHFMTQMR
                     KDMQNEAKGFAGLKWFMNDAQNSQVKQLAQIETLLQHKMRVLAVNIVNANESKTIVEK
                     AKAYNVPVVFFNRTPSKQALESYEKAYFVSADPKEAGRIQGELIAKVWKSNPDFDLNK
                     DGKLQFVLLKGEPSDVSAERSQAVVESLNQQGVQAEEIYSDTARWRRTLARNKMNEWL
                     VENRAAEIEVVISNNDEMAIGALDALNAHEKRLPIFGIDALPETLALMKKGEIAGTVL
                     NDSSAQAKAVVKLVSNLAQGKPALKDTQWESHSSKTIYLPHIGIDKENLGQFLP"
BASE COUNT          746 a          394 c          572 g          793 t
ORIGIN      
        1 tgttcataat catataccgg cttatcttga tttagacctc agcccttatt ttaattctgg
       61 ggtactatta attaataata tactttggaa gaagtattca gtatgtgatg agttggttac
      121 tatcaatgaa aaaattgtaa acttaactta tggcgatcaa gatgctctca atatttactt
      181 taaaggcggt tggggagcat tgccgataga gtataattat caagttgatg caattcttga
      241 actagtatta agaagagaac aagaggaact tgcgagaaaa aatggctatt tagatgtgat
      301 tccgaaaatt atccactata cgagtaaatt caaaccttgg aaaaaagaac tgcatacaat
      361 gcaaatatct acgcgtaaaa aatattggtt ttactatcat ttagagtgga acgatatttt
      421 ggaacaacat caaaaatagc tatcatacaa aagctgattc aagtgtttga atcagctttt
      481 tgtattagaa acgtgttcct aattgaaaaa taaccacttc tgcttggcag ctaaatttga
      541 agtgagcaac cagttcaaaa ccgctttcaa tcggggtgat ttcactgctg atttcacagg
      601 gttcagattc gacatcacgg gctttttgag tgaatttttc aagtgccgct ttagcttcat
      661 tttcgctttc ataagtgcgc tgaatagtag cgactgtttc gctgttatct aaaatagaac
      721 ctacatcaaa tgtgttacag ccttcgcatt caatcggttt atcgtttttc attggctaat
      781 ccttctaaat tgatgaataa tgtaggtact ttaaaactaa attgcgtaac ctgcaatcat
      841 cagtgaacga ttatttgatt tagttggtat tttgcaaagt ttggaggaaa aatgaccgct
      901 tgggagcgtg tgtttcacgc gctgttattt gaatgtttcg ctattatttt tacggttatc
      961 ttaacttctt ggctgacttc tcatcgtatg gttgatttaa ccgcagtgat tgtgatgatt
     1021 tcggtgattg caatggtgtg gaatgttatt tttaactggg gttttgataa ggtgtttacc
     1081 ggtgagcgag tgcaacgtgg tttaggcatt cgtattttgc attcattcct ttttgagggc
     1141 ggtttgctgg tttttactat cccattggta atgtatatgc tcgatatcgg ctggtggcag
     1201 gcgtttgtga tggatattgg aatgacctta tttgtattag tttattcggt agtttttaat
     1261 tgggtgtacg atcatttacg cctgaggtgg gttaaatctg gctaaattgt gaactagatc
     1321 acggtttcct tacacaaaat tcgctatgct tgaattggtt catatttggc atagcaagag
     1381 ggacattcta tgaagcgtac aatcttgagt gcttttgcac tttctgttat ttgcggtgtg
     1441 aatctaagtt acgcacaatc tgaaagcaga gtgggggtaa cgatttacaa atatgatgac
     1501 cattttatga ctcaaatgcg taaggatatg caaaacgagg cgaaaggctt cgctgggttg
     1561 aagtggttta tgaatgatgc acaaaattcc caagtgaagc aattagcgca aattgaaacc
     1621 ttacttcagc ataaaatgcg tgtgttggcg gtgaatattg tgaatgcaaa tgagtcgaaa
     1681 actattgtgg aaaaagcgaa ggcttataat gtgccggttg tcttttttaa ccgcacaccg
     1741 agtaaacaag cgttagaaag ttacgaaaag gcgtactttg tgagcgctga tcctaaagag
     1801 gccggtagaa tccaagggga attaattgcg aaagtgtgga aatcaaaccc cgatttcgat
     1861 ctaaataaag acgggaaatt gcaatttgta ttgcttaagg gcgagccgag tgatgtgagc
     1921 gctgagcgtt ctcaagctgt ggttgaatcg cttaatcaac aaggtgttca ggcagaagaa
     1981 atttacagtg acacggcgag atggcgtaga acattggctc gcaataaaat gaatgagtgg
     2041 ctggtggaaa accgtgcagc tgagattgaa gttgtgattt caaacaatga tgaaatggca
     2101 attggtgctt tagatgcgtt aaatgcacac gagaaaagat tgccgatctt tggtattgat
     2161 gccttgcctg agacgttagc attaatgaaa aaaggggaaa tagccggcac ggtattaaat
     2221 gatagctctg cacaagcgaa agcggtggtg aaattggtat ctaatttggc acaaggtaag
     2281 cctgcgctga aagatacgca gtgggaaagc cattcctcta aaacgattta tcttccacat
     2341 attggtattg ataaggaaaa tttagggcaa tttttacctt aaatggagga gcggggcgtt
     2401 ataaatacgc cccttattga tgataacaag cggtcatttt tcagtaaaat cttgcaaatc
     2461 ctttctcttt tcttccaaca gatttgaata gagcgaatat tcaaa
//
LOCUS       DANMBQ010000219         2460 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.223, whole genome shotgun sequence.
ACCESSION   DANMBQ010000219 DANMBQ010000000
VERSION     DANMBQ010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2460
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.223"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..168
                     /locus_tag="PXE92_002637"
     CDS             <1..168
                     /locus_tag="PXE92_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761819.1"
                     /translation="THATEYQTTLGVMKRILEPMLADFEVDPFEEAHYHKALTTLRQY
                     QPKGLGGLVRI"
     gene            404..895
                     /locus_tag="PXE92_002638"
     CDS             404..895
                     /locus_tag="PXE92_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5761820.1"
                     /translation="MQTKPILDACCGSRMFHFDKQNPLVLFADNRQIETTMKDRDKIR
                     HLEIKPDVLHDFTNMPYENESFWHIVFDPPHLVQGGENSWLVKKYGKLPCNWREVLKK
                     GFDECMRVLKPNGTLIFKWNETQIPVSEILKVIDCQPIYGHKSGRLNQTHWLAFVKIE
                     QSL"
     gene            922..1179
                     /locus_tag="PXE92_002639"
     CDS             922..1179
                     /locus_tag="PXE92_002639"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761821.1"
                     /translation="MEQIKLSEKAERALILSQLNENSAMIIDLDDVALILNCGYDYVQ
                     SKISKKPGFPEPVQGINGKSVLFKSGDVIRWVNRQARTRKN"
     gene            complement(1176..2165)
                     /locus_tag="PXE92_002640"
     CDS             complement(1176..2165)
                     /locus_tag="PXE92_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5761822.1"
                     /translation="MASIRKRGSKYQVEISKKGVRKSATFRTKAEAQAWAYEEERKIE
                     IISKGGVVDILFAEALERYQNEVSINKRTWRREIGRINNILKEPIANRYVQDIKRDDI
                     EDWIEARLKRGLKGSSVERDLSILSNVFTYCLKRWGYISENPMIGVIHPNKVPPRKQR
                     YSQEDIDKILEVSKYREDIKRSNARLAAAMLFAIETAMRAGEISGLTWDNVNFEKRIA
                     HLPMTKNGSSRDVPLSSKAIEILKRLETIKKDNSVFQLPQGNGLSARFFELKEKAGLS
                     YLNFHDTRREALSRLAKKVDVMTLAKISGHKDVKILLNTYYAPNMEEVAHLLD"
BASE COUNT          770 a          537 c          445 g          708 t
ORIGIN      
        1 acgcacgcta ccgagtatca aaccacgctt ggcgtaatga agcggatact tgaaccgatg
       61 ttagccgact tcgaggtcga tccgtttgaa gaggctcact accacaaagc cctaactacc
      121 ttaaggcaat accagccgaa aggcttaggc ggcttagtcc gaatttaatt tgcaaaaaaa
      181 tcacacaatc cgaccgcttg tgaaacaaca agcggcggat ttccataccc aaattttgag
      241 gacaagccga tgaaatacgc aaaaatcatt ctatttttaa ccgcctttgc agttgctgct
      301 gaccatctag agttacgcaa cgactgcgat ggcaaaattt gtatggctca acgctaatta
      361 acccaaccgc ttgttccgca agcggttatt ttttggagga aaaatgcaaa caaaaccgat
      421 attagatgcg tgttgtggtt cccgtatgtt tcattttgac aagcaaaatc cactcgtcct
      481 gtttgctgat aatcgacaaa tagaaaccac aatgaaagac cgagacaaaa tccgccattt
      541 agaaatcaaa cctgatgttt tacacgattt cacgaatatg ccatacgaaa acgagagttt
      601 ttggcacatt gtttttgatc cgccacattt agttcaaggt ggagaaaata gctggcttgt
      661 aaagaaatac ggcaaattac cttgcaactg gcgagaagtc ttgaagaaag gctttgacga
      721 atgtatgcga gtgctaaaac caaacggcac gcttattttc aagtggaatg aaacacaaat
      781 ccccgtttca gaaattttaa aagttattga ttgtcagccg atttatggac acaaaagcgg
      841 acgcttaaac caaacacatt ggctggcgtt tgtgaaaatt gagcaatccc tctaaatgag
      901 gggtttattt ttggagagaa tatggaacaa attaaacttt cagaaaaagc ggagagagcc
      961 ttaattcttt ctcagctcaa cgaaaattca gcaatgatta ttgatttaga tgatgttgcc
     1021 ctgattttga attgcggata tgactatgtg caatccaaga tcagtaaaaa gcccggtttc
     1081 ccagagccag tgcaaggcat taacgggaaa tcagttcttt tcaaaagtgg cgatgttatc
     1141 cgttgggtca accgtcaagc acgaacacgc aaaaattaat ccagcaaatg agcgacttct
     1201 tccatatttg gggcgtagta agtgttaagc aaaatcttca catctttatg ccctgaaatt
     1261 ttggctaagg tcatcacatc gacttttttt gccaagcgtg aaagagcctc tctcctcgtg
     1321 tcgtgaaaat tcaaataaga aagcccagcc ttttctttta actcaaagaa tctagcactt
     1381 aaaccattcc cttgtggaag ctgaaaaacg gaattatcct ttttgatggt ttccagtctt
     1441 ttcaagatct cgattgcctt tgatgataac ggaacgtctc ttgatgaacc gttttttgtc
     1501 ataggcaaat gagctattct tttctcaaaa ttcacattat cccacgttaa acccgaaatc
     1561 tcaccggcac gcattgccgt ttcaatcgca aataacatag ccgcagccaa tcgagcatta
     1621 gagcgtttaa tatcttctcg gtatttgctg acttctaaga ttttatcaat atcttcctgg
     1681 gaataacgct gttttcttgg tggcactttg tttgggtgaa taacaccgat catcggattt
     1741 tcactaatat agccccagcg ttttaagcag taggtaaata cattgcttaa aatagacaaa
     1801 tccctctcaa cacttgagcc ttttaaccct ctcttcaatc tagcttcgat ccaatcttca
     1861 atatcatctc gcttaatatc ttgtacataa cgattcgcaa taggctcttt caatatgtta
     1921 ttgattcgac ctatctctcg tcgccacgtc ctcttattaa tcgatacttc attttgatac
     1981 cgctctaacg cttccgcaaa taaaatatca actaccccac ctttcgagat gatctctatt
     2041 ttacgctctt cttcgtaagc ccatgcctgt gcctctgctt ttgtgcggaa ggtagctgat
     2101 tttctcaccc ctttcttcga gatttcgact tgatatttac tgccccgctt gcgaatgctc
     2161 gccatatttt tacctgcctt ttgtcgtaaa tttgtcgtaa tttataccat acaataaccg
     2221 acaataacag ataataaccg attttatgaa atcatcttaa ggcaaagaag agaggaaaaa
     2281 cttaagataa cctattgaaa taactataat aaacgataat aaccgacaaa aaacggaaat
     2341 aaaaaaaagc ccctaatcaa aaaagcgaaa aggggcggaa gtcttaccta aggaaatatg
     2401 aaaaaaactt gcataaatct gttacatata ctcagactgc ctaactgaac gaaagttcat
//
LOCUS       DANMBQ010000220         2435 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.225, whole genome shotgun sequence.
ACCESSION   DANMBQ010000220 DANMBQ010000000
VERSION     DANMBQ010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.225"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            32..751
                     /locus_tag="PXE92_002641"
                     /pseudo
     CDS             32..751
                     /locus_tag="PXE92_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     gene            811..1260
                     /locus_tag="PXE92_002642"
     CDS             811..1260
                     /locus_tag="PXE92_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudoazurin"
                     /protein_id="HDL5761823.1"
                     /translation="MLAKLKWNQLACVTLAFCSASVFSAHHEIKMLDNNAEGSMVFEP
                     GYVKAEVGDTVTFIPSHKGHWVESRSIPEGAEKFLSKEDEEFTITLTHEGVYVYYCPP
                     HRTMNMAGIIQVGQALNLEATQKEVEKIEKRTKENKGRLFEYLEQVK"
     gene            1361..1882
                     /locus_tag="PXE92_002643"
     CDS             1361..1882
                     /locus_tag="PXE92_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type II secretory pathway, pseudopilin PulG"
                     /protein_id="HDL5761824.1"
                     /translation="MYKAITLIEILTTITIMVIAVYFISPVIFTLQDRIALHSEIENI
                     QSFIQQIQTKARYTKRNYTLTLSQRNNQWCMIAVIKPINTSKQIICDCLNKHFCDLGK
                     EYHLYTPTHQQIVLKNKSLYPKSFINVDGVSGQLESKCIKLSLNKENEILQFEQLGRV
                     YVAAKNKRSTCKD"
     gene            1914..>2435
                     /locus_tag="PXE92_002644"
     CDS             1914..>2435
                     /locus_tag="PXE92_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761825.1"
                     /translation="MASALGAFLLLLVASSYADFYYTQTKQKEQLYLQAEAHQLLNYF
                     QQHFQHIGYQGSHRTDSNFDLFQQAGKSLNIVHKNCIIGFYDLNQDGCLGKRKTKTAA
                     CKLGTVNNTREVLKEIVGFKVENNEIYTFSSQLDNCVKEQCQTLLENCDGNWSKFTEA
                     NNFKTKKLDFSWRQ"
BASE COUNT          836 a          401 c          485 g          713 t
ORIGIN      
        1 gttttagtcg ttatctagga cagcccctac ttttaatact cgtaagcccc cttttgataa
       61 ccctaaagtt cgtcaagcat tgaattatgc ggtgaataaa actgaaattt taacttccgt
      121 ttaccaaggc tctgcaacgc cagctaaaaa cccaatgcct tctacgattt ggggatataa
      181 caacgaagta gccggttatg aatttaatcc ggaaaaggcg aagagcttgc ttaaagaggc
      241 cggattagaa aatggctttg aaacagaaat ttgggcaatg cctgtttctc gcccttacaa
      301 tccaaatgcc cgtagaatgg ctgaaatgat tcaagaggat tggaaagcaa taggggtaga
      361 ggcaaagata gtgagctatg aatggggaga atatcttaaa cgaatgggaa acggcgagca
      421 cgctaccgga atgattggtt ggaccggaga taacggcgat ccagataatt tcctcaatgc
      481 cctactcagt tgtaatgcgg tagaacaagg ctcaaactat gcagggtttt gtaatccaga
      541 gtttgaccgt ttaattaatg aggctgcgac tatcagtgat caaaacaagc ggtcagattt
      601 atataaaaaa gcgcaattca tctttaatga gcaagcacct tggttaccga ttgcacattc
      661 aacggtgtat tttccggtaa ggaaagaggt aaaaggctat gttgtcagcc cgtttattgc
      721 tcataatttt tatggtgttg agctggaata acctaaggta taatgaattg aactcatttt
      781 gtgcctcata aatttaggag caataaatat atgttagcga aacttaagtg gaatcaatta
      841 gcttgtgtaa cattggcatt ttgttcagcc tcagtatttt cagcccatca cgaaatcaaa
      901 atgttagata acaatgcgga aggatcaatg gtatttgagc ccggttatgt aaaagcagag
      961 gtgggcgata cggtaacatt tattccgtct cataaagggc attgggttga aagccgctcg
     1021 attccggaag gtgcggagaa gttcttatct aaagaagatg aggaatttac tattaccctt
     1081 actcacgaag gtgtttatgt ttactactgt ccgccacacc gaaccatgaa tatggccgga
     1141 attatccaag taggacaagc tctcaatctt gaagccacac aaaaagaagt ggaaaaaatt
     1201 gaaaaacgca cgaaagaaaa taaaggacgt ttatttgaat atttagagca agttaagtag
     1261 aagtgattta attttgcgat ctgcatcgaa aaatcaatat ttaatagttt acaaatgatg
     1321 cttaaattct aagataccct ctatcaatga gggtattttt atgtataaag ccatcacatt
     1381 aattgaaata ctaaccacta tcactattat ggtgatcgct gtttatttta tctcgccggt
     1441 tatttttaca ctgcaagatc gaattgcact tcatagtgaa attgaaaata tccaatcttt
     1501 tattcagcaa atccaaacta aagcacgtta taccaaacgt aattatacct taaccctttc
     1561 tcagcggaat aatcagtggt gtatgattgc ggtaattaag ccaatcaata ctagcaaaca
     1621 aattatttgt gattgtttga ataaacattt ttgtgattta ggaaaagaat atcatcttta
     1681 tacgccgact catcagcaga ttgtattaaa aaataaaagt ttatatccga aatcctttat
     1741 taatgttgat ggggtaagtg gtcaattaga atcaaaatgt attaagctca gtttaaataa
     1801 agaaaatgaa attttgcaat ttgaacaatt aggacgggtt tatgtggcag caaaaaataa
     1861 acgtagcacc tgcaaagatt agtttatctg cttttagcct aattgaagta ttaatggcta
     1921 gtgcattagg ggcgttttta ttattgcttg ttgcttcaag ttatgccgat ttctattaca
     1981 cacaaaccaa acaaaaagaa cagctctact tgcaagcaga agctcaccag ttactaaact
     2041 acttccaaca gcattttcaa cacattggct atcaaggctc tcacagaaca gacagtaatt
     2101 ttgatttatt tcagcaagca gggaaaagcc tgaatattgt gcataaaaat tgcattattg
     2161 gattttacga tttaaaccaa gatggctgtt tgggaaaacg taagacaaaa acggccgctt
     2221 gtaagttagg aacagtgaat aataccagag aggtgttaaa agaaattgtt ggctttaaag
     2281 tagaaaataa tgaaatttat actttttcat cgcaattaga taattgtgtg aaagaacaat
     2341 gccaaacatt attggaaaat tgcgatggaa attggagtaa atttaccgaa gcaaataatt
     2401 tcaaaactaa gaaactggat tttagttgga gacag
//
LOCUS       DANMBQ010000221         2423 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.226, whole genome shotgun sequence.
ACCESSION   DANMBQ010000221 DANMBQ010000000
VERSION     DANMBQ010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2423
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.226"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            27..296
                     /locus_tag="PXE92_002645"
     CDS             27..296
                     /locus_tag="PXE92_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1040 family protein"
                     /protein_id="HDL5761826.1"
                     /translation="MKCERLEELLELLGEHWRKNPDLHLIDILQQLSVEVGEPDNFKA
                     LSDEVLIYQLKMRNAGKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            360..998
                     /locus_tag="PXE92_002646"
     CDS             360..998
                     /locus_tag="PXE92_002646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL5761827.1"
                     /translation="MKKLALKTAFVALSALFTFNSTAIAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELSYKIPSQIKEKLPSDSKLVQYHVNFLGRQSEDLTRAWAL
                     AMALGAEDKVKTALFEGAQKDAFKSMDDIRSVFLANGITAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFADSSSTNDFIKRYVDAVVFLSKK"
     gene            1082..1858
                     /locus_tag="PXE92_002647"
     CDS             1082..1858
                     /locus_tag="PXE92_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL5761828.1"
                     /translation="MTKLSILNLVPIREGQTAKQAVDSMVKLAKHAESIGIERYWIAE
                     HHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLPNHSPYIVAEQYGTLETLYPNRV
                     ELGLGRAPGTDMRTATALRRNAQSLPFPDEISELKGYFEGTNSVSAYPAQGLNVPFYI
                     LGSSPESAYLAAERGLPYAFASHFAPRFMDDAVRIYRTHFKPSEVLDKPYVILGVNAI
                     AAETDQEAEQLATTQTQFFLNVVTNAQNYLQPPVESDDKV"
     gene            1868..2122
                     /locus_tag="PXE92_002648"
     CDS             1868..2122
                     /locus_tag="PXE92_002648"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="luciferase"
                     /protein_id="HDL5761829.1"
                     /translation="MKAEIVPHFGPVSFQQNALYNQEKPVVRQMTACSLIGSRESIEQ
                     QLKSLKARIEIDEIMAVSYIFDEQKQHQSYTWLKEIADKV"
     gene            2124..2417
                     /locus_tag="PXE92_002649"
     CDS             2124..2417
                     /locus_tag="PXE92_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5761830.1"
                     /translation="MSKTMQQKAADAHNMCKLKGDSMLDNSDRQIAFEAVYDSEEIAV
                     QAVEFFTQKAKSVETEPCDIQSEITPIIDGFLMKMWITFSCQAEVILFQMAVR"
BASE COUNT          775 a          475 c          499 g          674 t
ORIGIN      
        1 ccaacaagtt ttttaagggg taaaagatga aatgcgaacg tttagaagag ttattagagt
       61 tacttggcga acattggcgt aaaaatcctg acttacacct cattgatatt ttgcagcagc
      121 tttcagttga agtgggcgag cctgataatt tcaaagcgtt aagcgatgaa gtgttaatct
      181 atcagcttaa aatgcgaaat gcaggcaaat ttgagcctat tcccggcata aaaaaagatt
      241 atgaagatga ttttaaaacg gctttattgc gagctcgtgg aattttaaac gattaagatt
      301 gtcttatccg ttagctagtt tagcatttat tatttatcaa catttttgaa ggaatcatta
      361 tgaaaaaatt ggcattaaaa acggcatttg ttgcactttc tgcccttttt acatttaact
      421 caacggcaat cgctgctgat ccaaccgcag gcaaagaata tatcgaagtg cgtaaagcac
      481 cttctgcaca aaaagaagtg gtggaatttt tctcattcta ctgcccacac tgttatgatt
      541 ttgaattaag ctacaaaatc ccaagccaaa tcaaagaaaa attaccaagc gatagcaaat
      601 tagtgcaata tcacgttaat ttcttaggtc gccaatctga agatttaact cgtgcttggg
      661 cattagcaat ggcattaggt gcggaagata aagtaaaaac cgcattattt gaaggtgctc
      721 aaaaagacgc attcaaatca atggacgata ttcgctctgt attcttagca aacggcatta
      781 cagctgaaca gtttgatagc ggtattaata gctttgcggt aaatggctta gtgaataaac
      841 aagttcaatt agcggaagac ttccaaattc gtggtgtgcc tgcattcttc gtaaatggtc
      901 aataccaact caacttagaa ggctttgcag attcttcatc aacgaatgat ttcatcaaac
      961 gttatgttga tgcggttgtg ttcttaagca agaaataacc ccttaaaata gttagggttt
     1021 ttacaatgct gagtaggtaa atcctattca gcatttttta tatgcaaact cggagaacaa
     1081 aatgacaaag ttatctatcc taaaccttgt acctattcgt gaagggcaaa ctgccaaaca
     1141 agcggtcgat tctatggtga aattagcaaa acacgcggaa agtatcggca ttgaacgcta
     1201 ttggattgca gagcaccaca atatgaaaaa ccttgccagc tcggcaacac agctcctcat
     1261 tcagcatgcc ctttctcaca ctgaaaaatt aagagtggga tcaggtggcg tgatgttgcc
     1321 taaccatagt ccttatattg tggcagagca atacggtacg cttgaaacac tctaccctaa
     1381 ccgtgtagaa cttgggcttg ggcgagcacc aggcaccgat atgcgaaccg ctaccgcttt
     1441 acgccgtaat gcacaaagtc tgccatttcc tgatgaaatc agcgaactaa aaggttattt
     1501 tgaaggcaca aattctgtgt ctgcctaccc tgcacagggg ttgaatgtgc cgttttatat
     1561 tttaggctca agccctgaaa gtgcctattt agcagcagaa cgtggcttgc cttatgcctt
     1621 tgcttcacat ttcgctcctc gttttatgga cgatgcggtg cgaatttatc gcacacactt
     1681 taagccgtct gaagtgttag ataaacccta tgtgatttta ggtgtgaatg cgattgcggc
     1741 agaaaccgac caagaggcag aacagcttgc taccactcag actcagtttt tcttaaatgt
     1801 tgttaccaat gcccaaaact atttacaacc gcccgtcgaa tccgatgata aagtgtgaaa
     1861 aaattttgtg aaagcggaaa tcgtaccgca tttcgggcct gtttcgttcc aacaaaatgc
     1921 gttatacaac caagagaaac ccgttgttcg ccaaatgact gcttgttcac ttatcggtag
     1981 ccgagagagc attgaacaac agctcaagtc attaaaagca cgcattgaaa ttgatgaaat
     2041 tatggcggta agctacattt tcgatgagca aaaacagcat caatcctata cttggttaaa
     2101 agagattgca gataaggtgt gatatgagca aaacaatgca acaaaaagcc gctgatgcac
     2161 ataatatgtg taagctaaaa ggcgactcta tgttagataa ctcagaccgc caaattgcct
     2221 ttgaagcagt gtatgatagt gaagaaatag ctgtacaagc ggtcgaattt ttcacacaaa
     2281 aagcaaaatc ggtagaaacc gagccttgcg acattcaaag tgaaatcaca cccattatag
     2341 atggctttct gatgaaaatg tggataactt tcagttgcca agcagaagta atcttatttc
     2401 aaatggcggt gagatagata taa
//
LOCUS       DANMBQ010000222         2386 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.227, whole genome shotgun sequence.
ACCESSION   DANMBQ010000222 DANMBQ010000000
VERSION     DANMBQ010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.227"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            12..698
                     /locus_tag="PXE92_002650"
     CDS             12..698
                     /locus_tag="PXE92_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5761831.1"
                     /translation="MDTLASRLKIVLDQKGLTQEKFAEQIGVSQPSVFKILNGQTRNP
                     TRIYEIANVLDVDVNWLKTGKGEAPDFAKIGKNPTAYEEESSMLRLEVLDVYASAGNG
                     SFVTGDLTAYTHAVEFENAYFAQVFQRANAKGLSIINVDGDSMEPTIGNGDLLFVDTT
                     KSAYQGDGVYVFSYGENLYVKRLQFAGDELLVISDNPLYKEWRITSENEHKFQIHGKV
                     EFMQGHIRRV"
     gene            702..1220
                     /locus_tag="PXE92_002651"
     CDS             702..1220
                     /locus_tag="PXE92_002651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761832.1"
                     /translation="MEHQNLTHLVYITSHKQIGVYSISNLNIDDLYFKGYCIQKNRVI
                     TLRADRIIKQFDDLALAENYAKNIPQDVFYLFDSLLNQQRKEKITPIYKIGLCFTGFK
                     QARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPAKLAKAEKLGIKIIDDEE
                     FLYMLETGVVPD"
     gene            1238..1648
                     /locus_tag="PXE92_002652"
     CDS             1238..1648
                     /locus_tag="PXE92_002652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761833.1"
                     /translation="MFIPKSSKLKTNNYIEELNIKSIGETDMKKALTLLALSLFALPV
                     QADSLELARNKVKQIFISDEEPKVKDATWTAPFIFKVGVFDDGTKRDGYAEYVCQVLY
                     DHGFKGKGVLVSVIDIKKLVQTGDWVDLGKAKCQ"
     gene            1748..2008
                     /locus_tag="PXE92_002653"
     CDS             1748..2008
                     /locus_tag="PXE92_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excalibur calcium-binding domain-containing
                     protein"
                     /protein_id="HDL5761834.1"
                     /translation="MKKLVLSILFVISPMALAYSCNDPIPYCKEMQSCEQAKFYLNQC
                     NAGRLDRDNDGIPCENVCGKKGKSEKKDDKKSDKSKSKKTSN"
     gene            2040..>2386
                     /locus_tag="PXE92_002654"
     CDS             2040..>2386
                     /locus_tag="PXE92_002654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL5761835.1"
                     /translation="MMNNQSVWHLFCDESGISGKPFYAFGALWIREDKISLFEKEIQK
                     LREKHYCTDEIKWQGTNSKRFSEFYRELVSFFFQADYLFFNCIVVQQAIVNKAFHNGD
                     YEMAKQKHFNLLI"
BASE COUNT          830 a          370 c          465 g          721 t
ORIGIN      
        1 aggagttcct aatggatact ttggcaagtc gtttgaaaat cgttttagac caaaaaggtt
       61 taacacagga aaaatttgca gaacaaatag gtgtttcaca gccatctgtt tttaaaatcc
      121 tgaatggaca aactcgaaat cccacaagga tttatgaaat tgcaaacgtc ctagatgtcg
      181 atgtaaattg gctcaaaacc ggcaaaggcg aagcaccaga ttttgcgaaa atcggaaaaa
      241 atccgaccgc ttatgaagag gaaagctcaa tgcttcgact tgaggtgtta gatgtatatg
      301 cctctgccgg caatggtagt tttgtcacgg gagacttaac cgcttacacg cacgcagtag
      361 aatttgaaaa tgcctatttt gcacaagtct ttcaacgtgc aaatgccaaa ggcttatcaa
      421 ttattaatgt agatggcgac tcaatggagc caactatcgg taacggtgat ttgctgttcg
      481 tagataccac taaatccgct tatcaaggcg atggtgtcta tgttttcagc tatggcgaaa
      541 acttatatgt aaaacgcttg cagttcgccg gtgatgaatt gttagtcatt tccgacaatc
      601 cgctttataa agagtggaga atcacatcag aaaatgagca taaattccaa attcacggta
      661 aagtggaatt tatgcaaggg catattagga gggtttaggt gatggaacat caaaatctaa
      721 ctcatcttgt ctatattaca tcacataaac aaattggagt ttattcgatt tctaatttga
      781 atattgatga cctttacttc aaaggttact gtattcagaa aaatagagtt atcacattaa
      841 gagctgatcg cattattaaa caatttgatg atttagctct tgccgaaaat tatgccaaaa
      901 atattcctca agatgtgttt tatctatttg attctcttct gaaccagcaa cgaaaagaaa
      961 aaataacacc gatctataaa atcggtttgt gttttactgg atttaagcaa gctagaaaaa
     1021 atgaattaat tcaactagca gtagataatg atttgagagt agtacaaaac gtaactggtg
     1081 cagttgattt tttaattttc gataaagagt cgaaaactgt tggaccagca aaactagcaa
     1141 aagctgaaaa gttaggaatt aaaatcatcg atgatgaaga atttttatat atgttagaaa
     1201 ctggcgttgt gccggattag gtttgacttc tcaatagatg tttataccaa aatcatctaa
     1261 actaaaaact aacaattaca tagaagaatt aaacatcaaa tcaatagggg aaaccgatat
     1321 gaaaaaagca cttacactac ttgcactatc actatttgca ttgcctgtac aagccgatag
     1381 cctcgaactt gctcgtaata aagtaaagca aatttttatc agtgatgaag agccaaaggt
     1441 aaaagatgcg acttggactg caccatttat ctttaaggtt ggagtttttg atgacggcac
     1501 gaaaagagat ggctacgccg aatatgtttg ccaagtttta tacgaccacg gatttaaagg
     1561 taaaggtgtg ttggttagcg taatcgatat aaaaaaacta gtccaaacag gtgattgggt
     1621 tgatcttggc aaagctaaat gtcagtaata cataagggac agattattct gtctctttgt
     1681 atttaatcat taatgaagaa acctttttac tacacagtta atactatatt ttataatggg
     1741 gttcataatg aaaaaattag tcctctcgat tttatttgtt atttcgccta tggctttggc
     1801 ttatagctgc aatgacccta tcccttactg caaagaaatg caatcttgcg agcaagcaaa
     1861 gttttattta aatcaatgca atgccggtcg attagataga gataacgatg gcataccttg
     1921 tgaaaatgtt tgtggcaaga aaggaaagtc cgagaaaaaa gacgataaga aatcagataa
     1981 atcaaaatct aaaaaaactt caaattagag acaggcgttg tgcctgatta aaaggggtaa
     2041 tgatgaataa ccagtcagtt tggcacttat tttgcgatga atccggtata agcggtaagc
     2101 ctttttatgc tttcggtgca ttatggataa gagaagataa aattagctta tttgaaaaag
     2161 aaatacagaa attacgagaa aagcactatt gcactgatga aataaaatgg caaggtacaa
     2221 attctaaacg ctttagtgaa ttttatcgtg aattggttag ttttttcttt caggctgatt
     2281 atttattttt taactgtatt gtagttcaac aagctattgt caataaagct tttcataacg
     2341 gtgattatga aatggcaaaa cagaagcatt ttaatttatt gatttg
//
LOCUS       DANMBQ010000223         2380 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.228, whole genome shotgun sequence.
ACCESSION   DANMBQ010000223 DANMBQ010000000
VERSION     DANMBQ010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2380
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.228"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            31..762
                     /locus_tag="PXE92_002655"
     CDS             31..762
                     /locus_tag="PXE92_002655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5761836.1"
                     /translation="MRPLKEIRYDNLLRLIDEAKSTSDLANRTGIAVSYLLQIKNKNA
                     IQNGKPKGIGDKIAAKLEDGMNKPRGWLDQIHSEQSNLINSRIGNEEQKLQEQDLNDF
                     IIIDVLDVSASAGFGSSSELVEVVNQMRYVPEQFYSLFRNMAPRYIRIINLSGDSMYP
                     TFSSGDMLFVDISVNEFTGDGVYVFTYKGHLYVKRLQNTGDQILVISDNKLYEKWSIT
                     EENQDQLFIHARVKVHQSQQLNFIG"
     gene            767..1270
                     /locus_tag="PXE92_002656"
     CDS             767..1270
                     /locus_tag="PXE92_002656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4365 domain-containing protein"
                     /protein_id="HDL5761837.1"
                     /translation="MLSPTQQMEQFNIAYVLAITANAGFNHAVPVVDNHSVDLAISAE
                     FPTEEGKRSDPEIKLQLKSEGDLHIKNGLVSYKLKKKNYDDLRKNCANPRYLIVCDLP
                     KKTTQWLSHKKKFMTLKRHCYWVSLKGFPATTNRSSVTLTFPENQRFTTDVLIKMIEY
                     ARVGETL"
     gene            1267..2379
                     /locus_tag="PXE92_002657"
     CDS             1267..2379
                     /locus_tag="PXE92_002657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761838.1"
                     /translation="MKNNKTDTLLFLEQFARYLTAKSWQIAFELEYAVIWQKDLGHRI
                     LEVTLPKPIAEDREEVLQKALEKLAKIEEKNVETLKLNISNQYTDKLSVRVIGESVKD
                     GTIPLNEGVKLFEKTKHLINALALSAKKKKAAFGHNSGGKDVAEFMSQVRLGQTQIGS
                     YIVNLSYPVENIEIKEQNEIIQAISFSRSVSHNLVNSLNKLKEKITHYDHNPTIFAEL
                     IPEGVSHNLCEAIIGLSGSDQQRKIEIKLQVGEISDESMPSETFNIKFSQKEIKVIQV
                     ASRYYQGEYTLPHYEIIGKVVGLHSSNLADGGYIQVPCKIEDKTVDIRVDLPPEQYKL
                     AAEAHKTEQQIRCKGENLYINKKKGRLQKLTSINIL"
BASE COUNT          890 a          370 c          454 g          666 t
ORIGIN      
        1 aaaataaagc aaatagtatg gaggtgggat atgagacccc taaaagaaat tagatacgat
       61 aatttattac gcttgataga tgaggctaaa agcacatctg atttagctaa tcgaacaggt
      121 atcgcagtaa gctatctact acaaatcaaa aataaaaatg ctattcagaa cggtaagcca
      181 aaaggcattg gtgacaagat tgccgccaaa ttagaagatg ggatgaataa acctagaggc
      241 tggttagatc aaatacattc agagcaatca aaccttatca attcaaggat aggcaatgaa
      301 gaacaaaaat tgcaggagca agatttaaat gactttatca taattgatgt attagatgtc
      361 agtgctagtg caggcttcgg ctcaagcagt gaattagttg aagtagtaaa tcaaatgcgt
      421 tatgtgcctg agcaatttta ttccctcttt cggaatatgg cacctcgata catcagaatt
      481 atcaatttaa gtggtgattc tatgtacccg acattttcct cgggagatat gctttttgtt
      541 gatattagcg taaatgagtt taccggcgat ggtgtttatg tatttacata caaaggacat
      601 ttgtatgtaa aaagattaca aaatacaggc gatcaaatat tagtgatttc agataacaaa
      661 ctctatgaaa agtggagtat cactgaagaa aatcaagatc agctatttat ccatgctaga
      721 gtaaaagttc accaaagcca acagttgaat tttattggat agaaatatgc tttcacctac
      781 acaacaaatg gaacaattta atattgctta tgtgttagct attactgcta atgcaggctt
      841 taatcatgcg gtaccagtag tagacaatca tagtgttgat cttgcaattt ctgcagaatt
      901 tccgactgaa gaagggaaaa gaagtgatcc ggaaataaag ctacaactta aatcagaagg
      961 agatcttcat attaaaaatg gtctggtaag ctataaactc aaaaagaaaa actatgatga
     1021 tttaaggaaa aattgtgcga accctcgcta cttaattgta tgtgacttgc ctaaaaaaac
     1081 gactcaatgg ctctcacata agaaaaaatt tatgacttta aaaagacatt gttattgggt
     1141 atcattaaaa ggctttccgg caacaacaaa tagaagtagt gttaccctca catttccaga
     1201 aaatcaacga tttaccactg atgtactcat taaaatgatt gaatacgcta gagtaggaga
     1261 aactttatga aaaacaataa aacggacacg ttactgtttc tcgaacagtt tgctcgctat
     1321 ttaactgcca aaagctggca aattgcgttt gaattagagt atgcggttat ttggcagaaa
     1381 gatcttggac atcgaatttt agaggttaca ttaccaaagc caattgctga agatagagag
     1441 gaagtgttgc agaaagcact tgaaaagctc gccaaaattg aagaaaaaaa cgtagaaacg
     1501 ttaaagctta atatttcaaa tcaatataca gacaagctat ctgttagagt gattggcgaa
     1561 agcgttaaag atgggacaat tccgctaaac gaaggtgtaa aattatttga aaaaaccaaa
     1621 catttaatta atgccttggc actttcagct aaaaagaaaa aggcagcttt tggacataac
     1681 tcaggtggca aagatgtagc agagtttatg tctcaagttc gtttagggca aactcaaatt
     1741 ggaagctata ttgtcaattt atcttatcct gttgagaata ttgaaattaa ggaacagaat
     1801 gaaattattc aggcaatttc attttctcgg agtgtatcgc ataatttggt taacagcctg
     1861 aacaagctga aagaaaaaat tactcattat gatcacaatc cgactatttt tgctgaattg
     1921 atacctgaag gagtaagtca taatctttgt gaagctatta ttggattaag tggttcagac
     1981 caacaaagaa aaatcgaaat taaactccaa gtgggtgaaa ttagtgatga atcaatgcct
     2041 tctgaaacat ttaatattaa attttctcaa aaagaaatta aagtaattca ggttgcatct
     2101 aggtattacc aaggagaata taccctccca cactatgaaa tcattggcaa agttgtaggg
     2161 ttacactcca gcaatttagc tgatggaggt tatattcagg taccttgtaa aatagaagat
     2221 aaaacggttg acattagggt tgaccttcct cctgagcagt acaaattggc agctgaagca
     2281 cacaaaaccg aacagcaaat tcgatgtaaa ggagaaaacc tatatatcaa taagaaaaaa
     2341 ggtcggctac aaaaattaac ctcaataaat atcttataga
//
LOCUS       DANMBQ010000224         2368 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.229, whole genome shotgun sequence.
ACCESSION   DANMBQ010000224 DANMBQ010000000
VERSION     DANMBQ010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.229"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..551)
                     /locus_tag="PXE92_002658"
     CDS             complement(<1..551)
                     /locus_tag="PXE92_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HDL5761839.1"
                     /translation="MSNQVQFPVFNFNSSAVRVIIDPNQEPWFCGADVCRILGYVNES
                     LTLQKHCKENGVSKRYLTDKMQRQQKAIFINEPNLYRLIIKSRKPEAEKFEAWVFEEV
                     LPQIRKTGKYALQNNQQNLPLAPPPKKYSFDFTEDELQSLIWAWFAFVRGIHTFRYIY
                     PMFQKLGSNIAPEIYGQGFEYSHT"
     gene            complement(799..1638)
                     /locus_tag="PXE92_002659"
     CDS             complement(799..1638)
                     /locus_tag="PXE92_002659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HDL5761840.1"
                     /translation="MANSVMIVQGVEVKVTARDGEDYISLTDMCKAFGDSDQLIKNWL
                     QNKNTIEFLQVWEELNNPNFNLVELHQIKNNIGLNRFVMSVKKWTATGAIGLVAKAGR
                     YGSGTYAHKDIALEFGSWLSPEFKLYLIKEFQRLKQQEANESKLEWSVKRILSKANYR
                     IHTDAIKAHIIPALLNTKQHTFVYSSEADILNQALFGQTAKQWKDRNPNLKGNMRDHA
                     TVEQLTVLAALESQNALLIEQGYSQEERLAMLNRLAIQQMSSLLQTRAIEELKEKPLL
                     IEE"
     gene            1868..2245
                     /locus_tag="PXE92_002660"
     CDS             1868..2245
                     /locus_tag="PXE92_002660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761841.1"
                     /translation="MFSLLRDALTFAAMFTGILFPAIIHKYDLSLGTQIQLLSFVPAF
                     FVLCHFLIKRKYQRDFDRLSYLSAVVCVAMCAGVGAFSQSEMIELGFKVERVLDYVTI
                     KFLLYFWSLLLLPVVLRKLFGKD"
BASE COUNT          612 a          434 c          503 g          819 t
ORIGIN      
        1 gtgtggctat attcaaaacc ctgtccgtag atttcaggtg cgatatttga gccgagtttt
       61 tgaaacatcg ggtagatata gcggaaagtg tgaatgccac gcacgaaagc gaaccaagcc
      121 catatgaggc tttggagttc atcttcggta aagtcgaaag agtatttctt tggcggtggt
      181 gcaagcggta ggttttgctg attattttgc aacgcatatt taccagtctt gcgaatttgt
      241 ggcagaactt cttcaaatac ccacgcttca aacttttccg cttctggttt gcgtgatttg
      301 ataatcagtc ggtataggtt tggttcgttg atgaagatcg ctttttgttg tctctgcatt
      361 ttatcggtga ggtatcgttt cgatacccca ttttctttac agtgtttttg cagagtaagg
      421 ctttcattta cataacctaa aattcggcaa acatctgcac cgcaaaacca cggttcttga
      481 tttggatcga taatgacacg aacagcagat gaattgaaat tgaaaacagg gaattgaact
      541 tgatttgaca ttttttgtac cttttggatt taagtattta atccgatcat taagtgggtg
      601 atcggggttc aacttaccct ccaaaagatg ggcggagctt attcagatgt attgtatatc
      661 gctctctcgc cccgatcatt tcggattaaa cctaaaattt aggtacaaaa aaaccgcttt
      721 atatcggagg cggaaaccgc ttttggaaag taagtgtggt tatcttagcc gaaagggcgg
      781 ttttttgtca attagatttt attcttcaat tagcaatggc ttttctttca gttcttcaat
      841 cgctctggtt tgtaacagcg agctcatttg ctgaatagcc aaacggttga gcattgccag
      901 tcgctcttct tggctgtaac cttgctcaat tagtagggcg ttttggcttt ccaatgcagc
      961 aaggacggta agttgctcaa cggtagcgtg gtctcgcata ttgcctttca ggttcggatt
     1021 gcggtctttc cactgttttg ccgtttgtcc gaagagagct tgattgagaa tgtccgcttc
     1081 gctggaataa acgaaagtat gttgttttgt attcagcaat gccggtatga tgtgagcttt
     1141 gatggcatca gtatgaatgc ggtagttcgc cttgcttaaa atgcgtttta cgctccattc
     1201 gagcttactt tcgttcgctt cttgctgttt gagtcgttgg aactctttga tgagataaag
     1261 cttaaattct ggactgagcc aagaaccaaa ttcgagagca atatctttgt gggcgtaagt
     1321 gccgctacca tatcgtcctg cttttgctac tagcccaata gctcccgttg cagtccattt
     1381 tttgacagac atcacaaagc ggtttaagcc gatgttgttt ttaatttggt gtaattccac
     1441 caaattaaaa tttggattat tcagctcttc ccaaacttga agaaattcaa tggtattttt
     1501 attttgaagc cagtttttaa tgagctggtc actgtctcca aaagctttgc acatatcagt
     1561 taggctgatg taatcctcac catcacgagc ggttactttg acctccacgc cttgtacaat
     1621 cattacgcta tttgccattt cgtttctccg tttttaggta caaaaaaagc cgttggtgga
     1681 cggcttgaaa gtgcggttat cttaatccga attgggggcg gtgtcaatta gattaatccg
     1741 tataagtatg gaaccaagtt aaagagtaga actacaacac ataaccaaaa aatgaaattc
     1801 atatcttgct cagttttgat tttgtgtaaa atacgcttaa gtttgttttt catttaggaa
     1861 acctttaatg tttagtttat tgcgtgatgc tttaaccttt gctgcaatgt ttacagggat
     1921 tttatttcct gcaattattc ataaatacga tctatcactt ggtacacaaa tccaattact
     1981 tagctttgtt ccagctttct ttgtgttgtg ccattttctt attaagcgaa aatatcaacg
     2041 tgattttgac agactttcgt atttatctgc tgtggtttgc gtagcaatgt gtgcaggcgt
     2101 tggagcattt agccaatcag aaatgattga gctaggtttt aaagttgagc gtgttcttga
     2161 ttatgtgact atcaaattct tactctactt ttggagcttg ctgttattgc cagttgtgct
     2221 aagaaaattg tttgggaaag attagttggt tatttaaaga gagctatttg tcaaacctca
     2281 atatctattt ttgcgatctg catcgaaaaa ataaattttc gttctgacag taaaacgctt
     2341 tcgtagtaat ctcataaaaa acataagg
//
LOCUS       DANMBQ010000225         2367 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.230, whole genome shotgun sequence.
ACCESSION   DANMBQ010000225 DANMBQ010000000
VERSION     DANMBQ010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.230"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..770)
                     /locus_tag="PXE92_002661"
     CDS             complement(<1..770)
                     /locus_tag="PXE92_002661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761842.1"
                     /translation="MAKQIFKQAPLPFVGQKRMFLAQVSQILNENITDDGQGWTIIDV
                     FGGSGLLAHTAKHIKPKAHIIYNDYDGYAERLKHIPDTNRLRKQIYDIIGKSTPKNKR
                     LDPDKKSQVINIIQSFDGYIDVNCVASWLLFSGQQINSLEDLFNKIFWNGVRQTDYPS
                     AEGYLDGIEVTHESFHKLLPRFQHKDKVLLLLDPPYLCTRQESYKQATYFDLIDFLRL
                     INLTKVPYIFFSSTKSEFVRFVDFMVSEKKDNWQTFENA"
     gene            complement(817..942)
                     /locus_tag="PXE92_002662"
     CDS             complement(817..942)
                     /locus_tag="PXE92_002662"
                     /inference="COORDINATES: protein motif:HMM:NF021626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Com family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5761843.1"
                     /translation="MQSLRLIEIRCKYCQKLLAKAKDVQHLEIKCVRCKSINKFN"
     gene            complement(1089..1298)
                     /locus_tag="PXE92_002663"
     CDS             complement(1089..1298)
                     /locus_tag="PXE92_002663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761844.1"
                     /translation="MFRNELQVIDGKRYIVLECQFRREWRVAIESRGTVTNGEAIEIC
                     QYWVKYKGVKPEQLKIVEVPDILKE"
     gene            complement(1301..1594)
                     /locus_tag="PXE92_002664"
     CDS             complement(1301..1594)
                     /locus_tag="PXE92_002664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761845.1"
                     /translation="MSESFSLEKALWEEPRPRLQLDLPCPVIKLEVGKRYYTINIHGV
                     DCYDGDMSFTEIDEWTYESIDDVQTKSRAEQGLLFASEADAQEWIDAMRNSSR"
     gene            complement(1587..2024)
                     /locus_tag="PXE92_002665"
     CDS             complement(1587..2024)
                     /locus_tag="PXE92_002665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761846.1"
                     /translation="MKTTQHILDEREQQHGNYDSFAKIYGGLRKVSDSHAEKLTWPQQ
                     IAVEMMLFKIARILNNGANHQDNYQDIAGYAMLGGGLYNPNVSAEVKALPKPLTDSIY
                     PESHLNKSSVWRLDLEFETKEEATEVLEALTGKSAGVSEVNNE"
BASE COUNT          654 a          488 c          408 g          817 t
ORIGIN      
        1 gcattttcaa aagtttgcca gttatctttt ttctcgctaa ccataaaatc tacgaacctc
       61 acaaattcac tttttgttga actaaaaaag atataaggca ctttagttaa attgattaat
      121 cttaaaaaat cgattaaatc aaaataagtg gcttgcttat agctttcttg gcgagtacaa
      181 agatatggcg gatcaagtaa taacaatacc ttatctttat gctgaaaacg tggtaatagt
      241 ttatgaaaac tttcgtgagt aacttctatt ccatctaaat agccttccgc acttggataa
      301 tcggtttggc gaacaccatt ccaaaatatt ttgttaaata gatcctctaa actattaatt
      361 tgctgtccgc taaatagcaa ccaagaagcc acacaattta catcaatata cccatcaaaa
      421 gactgaataa tattgataac ttgagatttc ttatcaggat ctaatcgctt gtttttaggc
      481 gtactcttcc caataatgtc ataaatttgc ttgcgtagcc tatttgtatc gggaatatgc
      541 tttagccgct ccgcatatcc atcataatca ttgtagatga tgtgagcttt tggtttgata
      601 tgtttggcag tatgagctaa taacccacta ccaccaaata catctatgat tgtccaacct
      661 tgtccgtcat cagtaatatt ctcatttaaa atttgagaaa cctgagctag aaacattcgt
      721 ttctgaccta caaacggaag tggggcttgt ttaaagattt gctttgccat agttctccta
      781 tggcgttcag gcgttcttaa cgctcagaca ctcaattcag ttaaatttat tgattgattt
      841 acaacgtaca catttaattt ctaaatgttg tacatctttc gcttttgcca ataatttttg
      901 gcaatactta cagcggatct caattaatct taatgattgc atataaatac acttttactt
      961 cattttttga taaaattccg cctacctagc taggtggcgg cgtatggcta tatgcaagcg
     1021 tgctttgcgt agctggcatt ttaagtgtta ccgcacttat aatgtcgccg tttttaactc
     1081 atttgtcctt attctttcag aatatctggc acttcaacaa ttttcagttg ctcaggtttt
     1141 actcctttat atttaaccca atattggcag atttcgattg cttctccatt cgttacagta
     1201 cctctagact ctattgcaac tctccattcg cggcgaaatt ggcattcaag tacgatataa
     1261 cgtttaccat ctattacttg gagttcattt ctaaacatag ctacctacta ctatttcgca
     1321 ttgcatctat ccattcttga gcatctgctt cactggcaaa tagtaaccct tgttcagctc
     1381 tgctttttgt ctgcacatca tcaatacttt cataagtcca ttcatcaatt tcggtgaagc
     1441 tcatatctcc atcataacag tcaacgccat gaatattgat tgtataatag cgtttaccaa
     1501 cttcaagttt tataacaggg caaggtaaat ctaattgcaa tcttgggcgt ggttcttccc
     1561 acagtgcttt ttctaaacta aatgactcac tcattattta cctcactaac accggcactt
     1621 ttaccagtta aagcttccaa cacctcagtt gcctcttctt tggtctcaaa ctccaaatcc
     1681 agccgccaaa cagagctttt attaaggtgt gattcggggt aaatactatc ggttaatggt
     1741 tttggtaatg ctttaacttc tgccgacaca tttgggttat aaagtcctcc acctaacatt
     1801 gcataaccgg caatgtcttg ataattgtct tgatgatttg ctccgttatt taaaattcgg
     1861 gcaattttga ataacatcat ctcaacggcg atttgctgtg gccaagtgag cttttctgcg
     1921 tgtgagtcgc tgactttgcg taaaccacca taaatcttgg caaaactgtc gtagttgccg
     1981 tgttgttgtt cacgttcatc taaaatgtgt tgagttgttt tcatcgtgaa ttttccttta
     2041 gaaatagccg cttgcggaac aagcggttgg gttaattagc gttgagccat acaaattttg
     2101 ccatcgcagt cgttgcgtaa ctctagatgg tcagcagcaa ctgcaaaggc ggttaaaaag
     2161 agtatgattt ttgcgtattt catcgtctaa tcctcaaaat ttgggtgtgg aaatccgccg
     2221 cttgatgttt cgcaagcggt cgggttttat aattttttgt gattagaacg ttggcttttt
     2281 aaatgccggg tcgaaaccac gaaggtgttt gagtacacgc caattcgtca ttgggtcgca
     2341 atcaaattct cgggtaatcc gttcaag
//
LOCUS       DANMBQ010000226         2318 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.231, whole genome shotgun sequence.
ACCESSION   DANMBQ010000226 DANMBQ010000000
VERSION     DANMBQ010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.231"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            278..656
                     /gene="rnpB"
                     /locus_tag="PXE92_002666"
     ncRNA           278..656
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="PXE92_002666"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            717..1355
                     /locus_tag="PXE92_002667"
     CDS             717..1355
                     /locus_tag="PXE92_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1007 family protein"
                     /protein_id="HDL5761847.1"
                     /translation="MKFIKTIITLIALYSMPVFSHPHSFVDLKTNVIVEGSMLKSFQM
                     EWMLDEIASSELIYEVKNSQDKEKTQQNITAEMVQTALQNHYFSTLYDSQNQPIKFTT
                     KPTATRFEIKNNRVIFYITFHLAKPHELKQSKVRFYTYEPSYYIAMEYNRPADVNTSN
                     ASCKATLVQPQVDSKLRLYASGLDKNQSLDMPENGDYSLGAQFAQKVEIICD"
     gene            1346..>2318
                     /locus_tag="PXE92_002668"
     CDS             1346..>2318
                     /locus_tag="PXE92_002668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel/cobalt transporter"
                     /protein_id="HDL5761848.1"
                     /translation="MRLKATYWGMIVIGFLSLFALYQLYPMILFKVMEWQKNFNLQLS
                     ASLNELAENQSKAGITLVFISFLYGVFHAVGPGHGKFILSSYLSFEKTKLNQAMKITF
                     ASALVQGLVAISLVTVIVVIFTLSRQYFNLTLKWVERGSFGLMILFGIYWCYQVYRTV
                     NRARKPIIKSIRISQKKAGKLPLVTQKGHIHTENCSCRHKHLPTSNEMQQVRDWKAQL
                     MLVLSIGSRPCSGAILVLFLSYTLNLYAWGVISALAMAVGTGLTLSLFAYLVIIARNK
                     AVKVSQWYFSAQINRNIVWILKFTLGLALILFGMVLFHSSFIDAGTGV"
BASE COUNT          721 a          378 c          492 g          727 t
ORIGIN      
        1 cttgttttat aatctgatta aaatttgagt ttcggaaaaa tgtatatagt ttcggaaata
       61 gaaaggaaat tgattaaata accctttgaa attattgtaa taaaatagag aaaccaaaat
      121 tagttcactt agacttcaaa cgtgcgtaat ttttacgagt gaattaaagc gaagaggatt
      181 aagtttttaa atgaacttaa tcctttttta ttttgccata ataactacaa gcggttattt
      241 ccttgcaatt ttttgcgaaa gcattatact ctagtgctga gttggttagg caatcgctgg
      301 tttattgaag cctctaaatt cgtgaaaacg taaactgggg gacaagtaaa cgagaggaaa
      361 gtccgagcta cacagggcag agtgccggat aacgtccggg gggcgtgagc ctacgaccag
      421 tgcaacagag agcagaccgc cggctttgtc ggtaagggtg aaagggtgcg gtaagagcgc
      481 accgtgtggg tggtaacatt ccacagcagg gtaaactcca ctcgtagcaa gaccaaatag
      541 gaactcaatc ggtggcccgc tgagagttcg ggtaggttgc ttgagcgtat gtgtaaatgt
      601 acgtctagag gaatgattgt ccacgacaga actcggctta tcgaccaact cactaaattc
      661 ttgaaatgcg aacaggggga acttgttcgc ttttttattt tatagtgaaa gtaaatatga
      721 aatttattaa gacgattatc acgttaattg cattatattc aatgccagtt ttttctcacc
      781 cacattcatt tgttgatttg aaaacgaatg ttattgtgga aggctcaatg ttgaaatctt
      841 tccaaatgga atggatgcta gatgaaattg cttcttctga gttaatttat gaagtgaaaa
      901 atagccaaga taaagaaaaa actcagcaga atatcactgc agaaatggtg caaaccgcat
      961 tgcaaaatca ttattttagc accttatatg atagtcaaaa tcagccgata aaatttacga
     1021 caaagcccac agcgactcgc tttgaaatca agaataacag agtgattttt tatattactt
     1081 ttcatttagc taaacctcac gaattaaagc agagtaaagt gagattctat acttatgaac
     1141 cgagttatta tattgcgatg gaatataatc gccctgctga tgtcaatacc agtaatgcaa
     1201 gttgtaaagc aacattggtg caacctcaag tagatagtaa gttacgctta tatgcttccg
     1261 gtttggataa aaaccaatca ctggatatgc ctgaaaatgg agattactct cttggtgccc
     1321 aatttgctca aaaagtggag attatatgcg attaaaagca acatattggg gaatgatagt
     1381 gataggattt ttgagcctat ttgctcttta tcagctttat ccaatgatat tgtttaaagt
     1441 gatggaatgg caaaaaaact ttaatttaca gctttccgct tcgctcaatg aattagctga
     1501 aaatcaaagt aaagccggta ttaccttagt atttattagt tttttatatg gagtatttca
     1561 cgcagttggg cctggtcacg gaaaatttat tctgagcagt tatctttctt ttgaaaaaac
     1621 aaaattaaat caggcgatga aaatcacttt tgcctcagca ttggtgcagg gcttagtggc
     1681 aatttcattg gtgacggtga ttgtggtgat ttttactctc tctcgccaat attttaattt
     1741 aaccctaaaa tgggttgagc gggggagctt tggtttgatg atcttgttcg gcatttactg
     1801 gtgttaccag gtgtatcgaa cggtgaacag agcgcgaaag cctatcatta aatccattcg
     1861 tatttcgcaa aaaaaagctg gaaaattacc gcttgtcacg cagaaagggc atattcatac
     1921 cgaaaattgt agctgtaggc ataaacattt accgacttca aatgaaatgc aacaagtgag
     1981 agattggaaa gcacagctga tgttggtatt aagtattggc tcaagacctt gctctggcgc
     2041 tattcttgtt ttatttcttt cttatacgct caatctctat gcttgggggg ttatttcagc
     2101 attagctatg gcagtaggaa cagggctgac tttaagctta tttgcttatc ttgttatcat
     2161 tgcgagaaat aaggcagtta aggttagcca atggtatttt tcagctcaaa ttaatcgaaa
     2221 tatcgtttgg atattaaaat ttacacttgg actcgcatta attctatttg gaatggtatt
     2281 atttcacagt agtttcattg atgctggtac aggcgttt
//
LOCUS       DANMBQ010000227         2285 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.232, whole genome shotgun sequence.
ACCESSION   DANMBQ010000227 DANMBQ010000000
VERSION     DANMBQ010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2285
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.232"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..675
                     /locus_tag="PXE92_002669"
     CDS             <1..675
                     /locus_tag="PXE92_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL5761849.1"
                     /translation="EDKKTEEDKKTEEDKKTEEDKKAEEAKKIAEAKGIGNKEYKDGL
                     NELEEKNETGKNGEEIRTYGYLYNSHYSVVTAKMKQTLQENGRQMEPTVEVKGLKTEN
                     LPTEGKATYKGEAFDSHGNNSNSVVGGELIYNVDFSSRTGSGLVKNVQGGSIELAQGE
                     IKNDSIIASAHQKYNDQAVGNGSYNIQFFGPNAEEIGGKIELNGEGEGSMKQMLGIAG
                     TREEQK"
     gene            724..2118
                     /locus_tag="PXE92_002670"
     CDS             724..2118
                     /locus_tag="PXE92_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5761850.1"
                     /translation="MYKKHFLFLLVSPLVMAETVEFQQDPKEFDGQRQAVKFEQEIAK
                     KDLKLTAYLEEDNSLKGIEQHINQAILRQDWAKLERLLGDYAKQEQFDPLLLDYALAA
                     LAYAKKDYRSAAFYYQQLLKKQPDLTYPRFDLALILKEDYRYREAEQEFKQLKTDDLR
                     NAVNSALAQIEEEESWKPDFYLQYTQTNNVNNASSSPTVNVNGRIFIKESDSLPQSAK
                     GVRYGVGLSKMRNIGGNHFVGVDLGYNGVYYWNNHDYSEQSVSLTPKYSYRTATYRIG
                     VSPFIEQNWLGSSRYNYQFGSSINAVKLFERGLISGSFSHLQKRYSEQHIADRYNGYR
                     NQLTLGTQWQAVKNWRFFANLNASREITREKAQSSNKWLATIGVIYQTPSWASSVSVG
                     YGKRYFADKHYLFGYKRQDKEYQANVAVWNRSWHWQGIVPKLNFRYQKIDSNIADFYS
                     RSNKEVFMTLEKLF"
BASE COUNT          783 a          380 c          514 g          608 t
ORIGIN      
        1 gaggataaaa aaactgaaga ggataaaaaa actgaagagg ataaaaaaac tgaagaggat
       61 aaaaaggctg aagaagcaaa aaaaattgca gaggcaaaag gaattggcaa taaagaatat
      121 aaagatggat taaatgagtt agaagaaaaa aatgaaacag gtaaaaacgg agaagagatt
      181 cgaacctatg gttatctcta taacagccat tattccgttg taactgccaa aatgaaacaa
      241 actttacagg aaaatggtcg tcaaatggaa cctacggttg aagtgaaagg gcttaaaact
      301 gagaatttac cgacagaggg caaagcaaca tataaaggag aagcctttga ttctcacggt
      361 aataacagca attcagtagt aggtggagaa ttaatctata atgttgattt ctctagtcgt
      421 accggatcag gtctagttaa aaatgtacag ggcggttcta tcgagttagc acaaggcgaa
      481 ataaaaaatg atagtattat agcttctgct caccaaaagt ataatgatca ggctgttgga
      541 aatggtagtt acaatatcca attctttggt ccaaatgcag aagaaattgg agggaaaatt
      601 gagcttaatg gtgagggcga aggctcaatg aagcagatgt taggtattgc aggaacccga
      661 gaagaacaaa aataacattt aatacccaat gccgtttaat cttaaacggc attctttttt
      721 actatgtata aaaaacattt tctattttta cttgtttcgc ctttagtaat ggcggaaacg
      781 gttgagtttc agcaagatcc caaagagttt gatgggcagc gacaagcggt taaatttgag
      841 caagaaattg caaaaaagga tttaaaatta accgcttact tggaggaaga taattctctt
      901 aaaggtattg aacagcacat taaccaagcg attcttagac aagattgggc gaagctggaa
      961 aggctgcttg gcgattatgc aaagcaagag caatttgatc cgctactttt agactatgct
     1021 ttggcggcat tggcttatgc taaaaaagat tatcgctctg cggcgtttta ttatcagcag
     1081 ttgctgaaaa aacagcctga tttaacctac cctcgttttg atttggctct gattttaaaa
     1141 gaggattatc gctacaggga agcagagcaa gaatttaagc aactcaaaac cgatgattta
     1201 cgcaatgcgg tgaacagtgc gttggctcaa atagaggagg aagagagctg gaagccggat
     1261 ttttatttgc aatatactca aaccaacaat gtgaataatg cttcttcgtc gccaacggta
     1321 aatgtaaacg ggcggatttt tattaaagaa tcagacagct tgccgcagtc ggcaaaaggc
     1381 gtaagatatg gcgttggctt gagtaaaatg cgaaatatcg gcggtaatca ttttgtggga
     1441 gtcgatcttg gctataacgg cgtttattac tggaataacc acgattatag cgaacagtcg
     1501 gtctcactaa caccaaaata tagctacaga acggcaactt atcgtatcgg ggtttcgccc
     1561 tttattgagc agaattggct gggtagctca cggtataact atcaatttgg tagcagtatc
     1621 aatgctgtta aactttttga acgagggctg atttccggct cattcagcca tctgcaaaaa
     1681 cgttatagtg aacagcatat tgccgaccgt tacaatggtt atcgcaacca actcacgcta
     1741 ggtacgcaat ggcaagcggt caaaaattgg cgattttttg caaatcttaa cgctagccgt
     1801 gaaattaccc gtgagaaagc tcaatcttcc aataagtggc tggcgaccat tggcgtaatt
     1861 taccaaaccc caagctgggc aagttcggta agtgtcggat atggcaagcg ttattttgct
     1921 gataaacatt atctgtttgg ctataaacgc caagataagg aatatcaagc gaatgtggcg
     1981 gtgtggaatc gaagttggca ctggcaaggg attgtgccga aattgaattt ccgttatcaa
     2041 aaaatcgata gcaatattgc cgatttctac tctcgtagca ataaagaagt ctttatgacc
     2101 ttagagaaac tattttaagg ctgtgtatga atgtcgggga gaaaaatttt ctccccgata
     2161 tttatgtgta gaagatcaga cttgatctga caattcactc taaaaagtga gagtttcccg
     2221 tttagaatat gagtgtcaaa aatcaatcta aacaaaaagg aaactctcat gttttattct
     2281 aacaa
//
LOCUS       DANMBQ010000228         2252 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.233, whole genome shotgun sequence.
ACCESSION   DANMBQ010000228 DANMBQ010000000
VERSION     DANMBQ010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.233"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..1303
                     /locus_tag="PXE92_002671"
     CDS             <1..1303
                     /locus_tag="PXE92_002671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helicase/relaxase domain-containing protein"
                     /protein_id="HDL5761851.1"
                     /translation="SGHNDKAGLLSEIVQKADQHSVTLAIGGDVNKLVQRPVNSLPKQ
                     IVLALRYLLEQKIKLNTPKGPADGWFTEDGLWLVSKTAADNIRTYLLGQGISVPKDNP
                     KLFDEMQSLGIVEESPSGGAIWSCRIQADSGWTPATTFTLLRVKPEVAWENINDRPAY
                     FAGKVKVIEQITEEVNAEVQPPLVEETTKISLLPSKQSEAIIPSEETEISKAITSSDN
                     ATSAEVIINNENDLTSFVLDMFAPTETIEQNISVISSNKEQQIVMTTLTEQEKVPPKK
                     VKLEKSKKKNLQLTTLEPWNDMINPITGKEFVNWLKEGIATNKFAINKPSAKLHIVDG
                     NLFLVTPVIFEMYLQECGQPYDKETINNLQYDFQGLGLHSLKKTMTNGKPDTINFWKC
                     DVIGPRKTSSLTGYLIKNTHLLFGDKMLLNNHCLTLQEEDT"
     gene            1343..2221
                     /locus_tag="PXE92_002672"
     CDS             1343..2221
                     /locus_tag="PXE92_002672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5761852.1"
                     /translation="MFFYRHYLRADTKRSYNNIIRIIKKRYPNLNANDVTTDMLIEWR
                     NQVVGNTIKAVTWNNYVRHLKALYNFAIAQGLLCMSSNPFNHLFIRESRRKKKTYSSE
                     QLHKIDYILHNNIILPSFLKPSWFILAIIMTLRCTGIRRGQLVKLKIGDVNLSNRTIY
                     ISPEINKNHDYHIVPISDSLYPHIERLIQELKIHKQTDDCQLFNLNLFSRYTRRKGQP
                     MSQNQLTHIFRHISDLVGFTSSPHRFRHTVATQLMKKPENVYVVKKLLGHKDISVTLG
                     YIEYDVEMLRDTVNLL"
BASE COUNT          782 a          373 c          438 g          659 t
ORIGIN      
        1 gtctgggcat aacgataaag ccgggctttt atctgagatc gtgcagaaag ccgatcagca
       61 tagtgttacg ctagcaatcg gtggcgatgt gaataagctg gtacagcgac cagttaattc
      121 attgccgaag caaattgtgc tggctctacg ttatttactg gagcagaaaa tcaaattaaa
      181 tacgccaaaa ggaccagcag acggctggtt taccgaagat gggctgtggc tggtaagtaa
      241 aactgctgcc gataatatcc gaacttattt actgggacag gggatttccg tgcctaaaga
      301 taatccaaaa ctgtttgatg aaatgcaatc tcttggtatt gtggaagagt ctccttccgg
      361 cggtgcaatt tggagctgcc gtatccaagc cgattccggt tggacaccgg cgacaacatt
      421 tacgctatta cgagttaaac cggaggttgc ttgggagaat atcaacgata gaccggcgta
      481 ttttgccgga aaagtcaaag tgattgaaca gataactgaa gaggtcaatg cagaggttca
      541 gcctccatta gttgaagaaa ccactaaaat ttctctatta ccgagcaagc aatcggaggc
      601 tattattccg tctgaggaaa cggaaatatc gaaggcaatt acaagttcag acaatgcaac
      661 atctgcggaa gtaatcataa ataatgaaaa tgatttaact tcttttgtat tggatatgtt
      721 tgctcctaca gagacaattg agcaaaatat ttctgtcatt tcttcaaata aagagcagca
      781 aatcgtaatg acaacactta cggaacaaga aaaagttccg ccgaaaaaag ttaaattaga
      841 gaaaagtaag aaaaaaaatc ttcaattaac cactctagaa ccatggaatg atatgattaa
      901 tccaattact ggaaaagaat tcgtaaattg gttgaaggag gggatagcaa ccaataaatt
      961 tgcaattaac aaaccttctg caaaattaca tatagtagat ggtaatttat ttttagtcac
     1021 accagttatt tttgaaatgt atttgcaaga atgtggccaa ccttatgata aggaaactat
     1081 aaacaatctt cagtatgatt tccaggggct tggtcttcat tctcttaaaa aaaccatgac
     1141 taatggtaag ccagatacaa taaatttttg gaagtgtgac gtgattggtc ctagaaagac
     1201 ttcctcttta acaggatatt tgataaaaaa tactcatctc ttatttgggg ataaaatgtt
     1261 actaaataac cactgtttaa ctttacagga agaggacaca taatatggat tctaagattt
     1321 ccttcgatat attattggaa cgattttttt ctatcgtcat tatttacggg cggacacgaa
     1381 acgaagttat aacaatatta ttcgaattat caaaaagcgt tatccaaact taaatgcgaa
     1441 tgatgtgact actgatatgt taattgaatg gcgtaatcaa gttgttggta atacaattaa
     1501 agctgtgacg tggaataatt atgtgagaca cctaaaagca ttatataatt ttgcgatagc
     1561 acaggggcta ctttgcatga gtagtaatcc atttaatcat ttatttatta gagaatctag
     1621 aagaaaaaag aaaacttatt ccagtgagca gttgcataaa atcgattata ttctacataa
     1681 taatatcatc ttacctagtt ttttaaaacc tagctggttt attcttgcta tcattatgac
     1741 attgagatgc acaggaatta ggagagggca attggttaaa ctgaaaatcg gtgatgttaa
     1801 tttatcaaat aggacgatct atatttcacc agaaattaat aaaaaccatg attatcatat
     1861 agtaccgata tccgattcac tttatcccca tatagaaagg ctgattcagg agttaaagat
     1921 ccataaacaa acggatgatt gccagttatt taacctcaat ttattttctc gttatactcg
     1981 taggaaaggt cagccgatga gccaaaacca gcttactcat atatttaggc atatttccga
     2041 tttggttggc ttcacgtcat caccacatag atttcggcat acagtagcta ctcaattgat
     2101 gaagaaacct gaaaatgttt atgtagttaa gaaattatta ggtcataaag atatcagcgt
     2161 tacattagga tatattgaat acgatgtgga aatgctacga gacaccgtga acttactcta
     2221 ataaaagaga aatgagagaa aactattctc tc
//
LOCUS       DANMBQ010000229         2243 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.234, whole genome shotgun sequence.
ACCESSION   DANMBQ010000229 DANMBQ010000000
VERSION     DANMBQ010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.234"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..1442)
                     /locus_tag="PXE92_002673"
     CDS             complement(<1..1442)
                     /locus_tag="PXE92_002673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S6 family igA-specific metalloendopeptidase"
                     /protein_id="HDL5761853.1"
                     /translation="MVQAVSFSHFFAIHYFYFFLHKTKGQCTAKPLFSILLFHLFPKN
                     SAKFLLFFYFLVLMVLYSNEVANGKLLITGGTNLNGTLSAEGTSEIILSGRPTPHAYD
                     KVANKEVLIEGDWINRSFNATIFAAKDNGKLEISRNVANINGNFNLTDNATAQIGFTQ
                     GTSQACIRSDRTGVATCNINATLSETDLNSWERTKVAGNVSLADNSTFSLGSKADLTG
                     SITAQESTKVQLNDGSIANLTGLSTTGIFNGANGSTVNLSGVWTTLTNTVVDVLNVAN
                     GSQIHLNTPTATKQNTLTANTLTGNGIFKFVADLTKTASDIVTIKDTASGQFSIEIST
                     NGSAHSAQKIKLFETTNEEDFSLNLANEVRSGEYRYHLLKEGNVYYLNPEKEEEPKIT
                     QKGPSETADPLPEYTGDIEHSEKGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNG
                     NAHLIASELTAQTNAVLGVTTVLDHVIHSEG"
     gene            complement(1490..2167)
                     /locus_tag="PXE92_002674"
     CDS             complement(1490..2167)
                     /locus_tag="PXE92_002674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5761854.1"
                     /translation="MNSIIRKEWFTASEVAGMGNLPEQPSNVTRRATKNNWLKRQIEG
                     KRGVAFEYHYSSLPISVQQELGFAQTAVKEEPRTLVAAQTADEMERVPFYNVQASAGF
                     GAFNSEVYAPDDYIGLSKRWLDVRGFYLSYLAFITASGDSMYPTISDGDMLLVNRATT
                     QPKDGKIYVFRQGEQLWVKRVQGIMGGIRLISDNKELYSPIDVIFDETLDFEVIGQVV
                     YIGHEMI"
BASE COUNT          624 a          462 c          439 g          718 t
ORIGIN      
        1 ccttccgaat gaattacatg atctaatact gtagttacac ctaatacagc attagtttgc
       61 gcagttaact cggatgcgat caaatgtgca tttccattgt atttaggtaa tggctcagcg
      121 gtttcacccg atcctttttc tgaatgctca atgtcgcctg tgtattcagg taacggatca
      181 gcagtttcac ccggcccttt ttcagaatgc tcaatatccc cggtgtattc aggtaatggg
      241 tcagcggttt cacttggccc tttttgagta attttaggtt cttcctcttt ctctggattg
      301 aggtaataca cattcccttc tttgagtaaa tggtagcgat attcgcctga gcgcacttca
      361 tttgctaaat taagagaaaa gtcttcttca tttgttgttt caaataattt aatcttttgg
      421 gctgaatggg cgctaccatt tgtgctaatt tctatcgaaa attgaccgct tgcggtgtct
      481 ttaattgtga ctatatcgct cgctgttttc gtcagatcag cgacaaattt aaagatgccg
      541 ttccctgtga gggtattagc ggtaagcgta ttctgttttg ttgcagttgg agtgtttaaa
      601 tggatttggc taccatttgc gacattcaag acatctacaa cagtgttggt taaggttgtc
      661 cataccccag aaagattaac ggttgaacca ttggcgccat taaatattcc tgttgtactc
      721 aagccggtta aattagcaat acttccatca ttaagttgaa ccttagtgga ctcctgagct
      781 gtaattgagc cagttaagtc tgctttactg cctaacgaaa atgttgaatt gtcagctaaa
      841 gagacattgc cagccacttt ggttctctcc cagctgttta aatcagtctc tgataaagta
      901 gcgttaatat tacaggttgc tacgcctgtg cggtcagagc gaatacatgc ttgtgaggta
      961 ccttgggtaa aaccaatttg agcggtagca ttatctgtta aattaaaatt accgttaata
     1021 ttggcaacat tacggctgat ttcaagcttg ccattgtctt tagctgcaaa gattgttgcg
     1081 ttgaacgatc ggttgatcca gtcgccttca atcaggactt ctttattcgc tactttatca
     1141 taggcatgag gtgttggacg gcccgataaa atgatttcgc ttgtaccttc tgcagaaagc
     1201 gtaccgttga ggttcgttcc cccagtgata agcaatttgc cgtttgctac ttcattactg
     1261 tatagaacca ttaaaactaa gaaataaaag aataatagga atttggcgga atttttcggg
     1321 aataagtgaa acagaagtat tgaaaacagg ggctttgcgg tgcattgccc ctttgtttta
     1381 tgtagaaaaa agtaaaaata atgaattgcg aaaaaatggc taaaactaac cgcttgtacc
     1441 attaaaacaa cgaaaaagta aaaatgattt aagtagcttt aaatggcgtt taaatcatct
     1501 cgtgtccaat gtacacaacc tgcccgataa cctcaaaatc taacgtttca tcaaaaatca
     1561 catcaatagg gctgtatagc tctttattat cgctgattaa gcgaataccg cccataatgc
     1621 cttgcacacg tttaacccaa agctgctcgc cttggcggaa cacataaatt ttaccgtctt
     1681 taggctgggt ggtggctcgg tttaccaata gcatatcgcc atcactgatg gttgggtaca
     1741 ttgaatcacc tgaagcggta ataaatgcaa gatagctcaa atagaagcca cgcacatcta
     1801 gccatcgttt acttagccca atatagtcat caggggcata cacctcgcta ttgaaagcac
     1861 caaagcctgc tgaagcctgt acattataaa acggcacacg ttccatttca tctgcagttt
     1921 gggctgccac taatgttcta ggctcttctt ttactgccgt ttgagcaaag cctaactctt
     1981 gctgcacgct tattgggaga gagctgtagt ggtattcaaa agcaaccccc ctttttccct
     2041 ctatttgtct tttgagccaa ttatttttgg tagctcttct tgttacattt gatggttgtt
     2101 caggtaaatt tcccattcca gctacttcag atgccgtaaa ccattccttt ctaattatag
     2161 aattcataaa accccttttg aattcaagtg gaattcaaaa aaatttacaa acaaattctc
     2221 ttgaaaatca attagttaat taa
//
LOCUS       DANMBQ010000230         2066 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.235, whole genome shotgun sequence.
ACCESSION   DANMBQ010000230 DANMBQ010000000
VERSION     DANMBQ010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.235"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(132..350)
                     /gene="ilvM"
                     /locus_tag="PXE92_002675"
     CDS             complement(132..350)
                     /gene="ilvM"
                     /locus_tag="PXE92_002675"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HDL5761855.1"
                     /translation="MEEYQLTLKANKRPETLERILRVIRHRGFEVKCLNVESTDSAFN
                     LNFTLASKRPLSLLSHQLEKLFDIIEIN"
     gene            complement(360..2012)
                     /locus_tag="PXE92_002676"
     CDS             complement(360..2012)
                     /locus_tag="PXE92_002676"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HDL5761856.1"
                     /translation="MNGARFITESLKAHGVTTLFGYPGGAIMPTYDAIYDSGLDHLLC
                     RNEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLGDAALDSIPVVAITGQVASH
                     LIGTDAFQEADVLGLSLACTKHSFIVQNIEELPEILALAFQIAQSGRPGPVLVDIPRD
                     VQLAQTSALPIVYPKEPADAQDPNKLVVAKQLLATAKRPVLYVGGGVSMADGVQAVRN
                     FVKIANIPSVSTLKGLGTIDPTDPLYMGMIGMHGTKAANYAVQECDLLIACGARFDDR
                     VTGKLDTFAPHAKVIHIDIDNAEINKLRQAQVALKGNLIEAVNYLAQPLDIEPWREDV
                     RNLKQQFDFQYQENSGDGNIDAVALLHTLSQRKAKNSIVTTDVGQHQMWSAQHLTYHD
                     PKNYITSAGFGSMGFGLPAAIGAIKARAEDQVILITGDGSIMMNIQELGTLKRADLAV
                     KILLLDNQRLGMVRQWQSLFFHGRHSQTILDDNPDFVLLAKAFDIDGERIEKASEVSD
                     AIDRMFNAKGAYLLHVCIPQEDNVWPLVPPGACNADMLDDEV"
BASE COUNT          599 a          448 c          431 g          588 t
ORIGIN      
        1 aaataaagag caataagtga aaaaaaagag ttgaaatttg aagaaatgaa taaaatcaaa
       61 aggatagcga atgataaatt ttaagcataa aaaagccgtg tattttttta cacggcgaat
      121 gaaaagtctg attaattgat ttcaatgata tcaaacagtt tttctaattg atggcttaaa
      181 agagagagtg gacgtttact tgctaatgta aaatttaggt taaaggcgct gtctgttgat
      241 tctacattta agcatttcac ctcaaaacca cggtgacgta taacccgtaa aatacgctct
      301 aaggtttcag ggcgtttgtt agctttaagc gttaattgat attcttccat cttattctcc
      361 tatacctcat cgtctaacat atcggcatta cacgcccccg gcggtaccag tggccaaacg
      421 ttatcttcct gtggaataca aacgtgaagt aagtaagccc ctttggcatt gaacattctg
      481 tctattgcat ctgacacttc gctcgctttc tcaattcgct caccgtcaat atcaaaggct
      541 ttcgccaaca acacaaaatc agggttatca tctaaaatgg tttggctgtg tcgcccgtgg
      601 aagaacagcg attgccattg gcgaaccata cctaaacgtt ggttatccag taataggatt
      661 ttgaccgcta aatcagctct tttaagcgtg ccgagttctt gaatattcat cataatcgag
      721 ccatcaccgg taattaaaat aacctgatct tccgctcgag ctttgattgc cccaatcgcc
      781 gcaggcaagc caaaacccat agagccaaaa ccggcagagg tgatatagtt tttcggatcg
      841 tgataagtta aatgttgtgc cgaccacatt tgatgctgcc ctacatcggt agtgacgatg
      901 ctgtttttgg ctttccgctg tgaaagcgtg tgtaataacg ccacggcatc aatattgcca
      961 tcaccactat tttcttgata ttgaaagtca aattgctgct ttaaattacg cacatcttca
     1021 cgccatggtt caatatctaa cggttgagcc aagtaattca cggcttcaat caaattccct
     1081 tttaaggcaa cttgtgcttg acggagcttg ttgatttccg cattgtcgat atcaatgtga
     1141 atcactttag cgtgaggggc aaaagtgtct aatttgccgg taacacggtc atcaaagcgg
     1201 gcaccacagg caatgagtaa atcacactct tgtaccgcgt aatttgctgc ttttgtgccg
     1261 tgcataccga tcattcccat atagagcgga tcggttggat cgatagtgcc taaccctttt
     1321 aaggtagaaa cagacggaat atttgcaatt tttacaaaat ttctgaccgc ttgtacacca
     1381 tcagccatac taacgccacc gccgacataa agtaccgggc gtttggcggt ggctaataat
     1441 tgtttggcaa ccactaattt gttgggatct tgtgcatcgg caggttcttt aggataaacg
     1501 ataggcagag ccgaagtttg agctagttgc acatcacgtg gaatatcgac cagcaccgga
     1561 ccaggtctgc cactttgtgc aatttggaat gcgagggcta aaatttcagg gagctcctca
     1621 atattctgaa caataaaact gtgtttagtg caagcgagtg acaaacctag tacatcagct
     1681 tcttggaagg catcagtgcc gattaaatgg ctggcaactt gtccggtaat tgctaccaca
     1741 ggaatagaat caagtgcggc atcgcctaaa ccggtgatta aattagttgc cccagggccg
     1801 gaggtcgcaa tacaaacccc tactttacct gttgcacggg cataaccgat agctgccatt
     1861 gcagcacctt gttcattgcg gcaaagtaaa tgatctaagc ctgaatcata aattgcatca
     1921 taggtaggca taatagcccc gcccggatag ccaaaaagtg tcgttacccc gtgagctttt
     1981 aaactctcgg tgataaatct tgctccattc atggatgttg tgtccttaat atttttatta
     2041 ttttaaaacc aggcaatata gataac
//
LOCUS       DANMBQ010000231         2054 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.236, whole genome shotgun sequence.
ACCESSION   DANMBQ010000231 DANMBQ010000000
VERSION     DANMBQ010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2054)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2054)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2054
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.236"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            112..1062
                     /gene="coaA"
                     /locus_tag="PXE92_002677"
     CDS             112..1062
                     /gene="coaA"
                     /locus_tag="PXE92_002677"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HDL5761857.1"
                     /translation="MSLEKTSKITPFLTFDRQQWADLRKSVPLKLTEQDLKPLLGFNE
                     DLSLEEVRTIYLPLARLIQYYIEENLKRQTVLHRFLGIEPPKVPYIISIAGSVSVGKS
                     TSARILQALLSHYPKERKVDLITTDGFLYPLATLTEKNLLKKKGFPESYDIHSLIRFV
                     SDIKSGKRNVKAPIYSHLTYDIIPNQFNTVDQPDIVILEGLNVLQSGMNYPSSPHNVF
                     VSDFVDFSIYVDAEESLLKKWYINRFLKFRRSAFADPNSYFHHYASLSEQEAIETAST
                     IWEEINGLNLRQNILPSRERANLILIKGQDHAIETVKLRK"
     gene            1215..1754
                     /locus_tag="PXE92_002678"
     CDS             1215..1754
                     /locus_tag="PXE92_002678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HDL5761858.1"
                     /translation="MNKKFLLPLILFLALSVAFLVQLARNSQGDDPKKLESALIGKTV
                     PSFNLESVLDEKQTIDQNIVKTGKPRLLNVWATWCPTCYAEHEYLTILAKQGVEIVGI
                     DYKDERPKAIKFLANYGNPYKAIIFDPKGSLGLDLGVYGAPETFIIDGNGVIQYRHAG
                     DVNDQVWNQVLKPIYDGLK"
BASE COUNT          653 a          416 c          348 g          637 t
ORIGIN      
        1 cggattttct ctgcataact acggcaaaat aagtgcatat attgtatagt tacgccctta
       61 atttggtatt taattacctt aatattccag caaaaaattg agattttggc tatgagcctt
      121 gaaaaaacca gcaaaattac tccttttctc acttttgatc gccaacaatg ggctgattta
      181 cgcaaatccg ttccattgaa gctgaccgag caagacctaa aaccgctttt aggctttaat
      241 gaagatcttt cattagaaga agtacgcact atttatttac cgcttgcccg tttaattcaa
      301 tactatatag aagaaaactt aaaacgccag acagtcttac atcgctttct cggcattgaa
      361 ccgccaaaag tcccttacat tattagtatt gccggcagcg tatcggttgg gaaaagtacc
      421 tctgcccgta ttctgcaagc tctgctctcc cattacccta aagagcgaaa agtggattta
      481 attaccaccg acggtttttt atatccactt gcaacgctaa ccgaaaagaa cttactcaag
      541 aaaaaaggct ttccggaatc ttatgatatt cacagcctga ttcgctttgt atctgatatt
      601 aaatccggca aacgcaatgt gaaagctccg atttattcac atttgaccta cgatattatc
      661 ccaaatcaat ttaatacggt ggatcaaccc gatattgtga ttttagaagg gctaaacgtg
      721 ttacaaagtg gaatgaacta cccgtccagc ccacataatg tatttgtatc ggactttgtg
      781 gatttttcta tttatgtgga tgccgaagaa agtttgctga aaaaatggta tatcaaccgt
      841 ttcttgaaat tccgccgcag tgcctttgcc gacccaaact cctatttcca ccattatgcg
      901 agtttgtccg agcaagaagc gattgaaacc gcctcaacga tttgggaaga gatcaacggc
      961 ttaaatttac gccaaaatat tctcccaagc cgagagcgtg ccaacctcat tttaatcaaa
     1021 gggcaagacc acgccattga aacggtaaaa ttacgcaaat aatattttgc aaataattgg
     1081 gctttttcga ccgcttgtaa taccttaaaa tccgttgaat accactcaac ggatttttta
     1141 tttaaatcaa tgcttattca actatttttt ggtaagctaa cgactttgag agtgattgat
     1201 attaggcata tacaatgaac aaaaaatttc tacttccttt aattctcttt ttggcgttat
     1261 ctgtggcatt tttggttcaa ctcgctcgca actcgcaagg cgatgatccg aaaaaattag
     1321 aatcagcctt aattggcaaa acagttccga gctttaattt agaatcggta ttagatgaaa
     1381 aacagacaat cgaccaaaat atcgtcaaaa ccggcaaacc tcgcctgctt aacgtgtggg
     1441 caacttggtg tccgacttgt tatgccgaac acgaatactt aaccattttg gcaaaacaag
     1501 gggtggaaat tgtcggtatt gattataaag acgaacgccc aaaagcgatt aaattcttag
     1561 ccaattacgg caacccttat aaagcgatta tttttgaccc gaaaggctca ctcggtttag
     1621 atttaggtgt ttatggtgca cccgaaacct ttattattga cggcaacggc gtgattcaat
     1681 accgccacgc cggcgatgta aacgaccaag tgtggaacca agtgcttaaa ccgatttatg
     1741 atggattaaa gtaaatgttt gtatttcctg ctgacattaa gaaatctata aaaagcaatt
     1801 atcaaagaga atataacttt atttttataa tagttggttt atcaactatt ataggaataa
     1861 ttctaactat tttatcctca tttttattgc taaactattt agttagcatt gatgcaagaa
     1921 atttattcat taactcatta aacagtaact tctcaaccat atttattcct atagcattat
     1981 ttttattttt ccctataatg ctgatgaata tgcaacctat taagtattac ttatcacttg
     2041 aaaaaacaaa taca
//
LOCUS       DANMBQ010000232         2032 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.237, whole genome shotgun sequence.
ACCESSION   DANMBQ010000232 DANMBQ010000000
VERSION     DANMBQ010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.237"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..405)
                     /locus_tag="PXE92_002679"
     CDS             complement(<1..405)
                     /locus_tag="PXE92_002679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761859.1"
                     /translation="MEAKYNMIIELAQQQGLTHIQLTQKHCLHLAASVGKLCSGVVNN
                     AKQKIKTATGEIFTLLTIINHQIQFDEDLELHTWKASGTTPPEQRAIRMLHHTSQFAW
                     FAPWLVDSNEKEQNQNTIRINLFNKCSGILIEL"
     gene            complement(717..792)
                     /locus_tag="PXE92_002680"
     tRNA            complement(717..792)
                     /locus_tag="PXE92_002680"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(757..759),aa:Arg,seq:tct)
     gene            1073..1345
                     /locus_tag="PXE92_002681"
     CDS             1073..1345
                     /locus_tag="PXE92_002681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014391457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated protein Cas2"
                     /protein_id="HDL5761860.1"
                     /translation="MRNYLISYDLYKAGQNYDGLISYIKSHQVWAAIHKSVWYIKSNK
                     SAEQIRNELLIYLDKNDSVFVTDMNSAAWNNLTEGNGEYIRQNWMR"
     gene            complement(1323..1592)
                     /locus_tag="PXE92_002682"
     CDS             complement(1323..1592)
                     /locus_tag="PXE92_002682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761861.1"
                     /translation="MKNKNFEIAKVVILNEQLGSPKDLELKVVENSLSDEDRYDIKQA
                     VLKAVGNGCSDPEMLASRCCSAIEIINRNGLNTGNGSISTSSNSV"
BASE COUNT          565 a          396 c          384 g          687 t
ORIGIN      
        1 tagttcaatc agaatcccag agcatttgtt aaataaatta atcctgattg tattttggtt
       61 ttgttctttt tcattgctgt ccactaacca aggagcaaac caagcaaatt gcgaggtatg
      121 atgtaacata cgtatcgctc tttgctcggg tggggttgtt ccactagctt tccacgtgtg
      181 aagctctaag tcttcatcga actggatttg atggttaatg atggtgagta atgtaaaaat
      241 ttctcccgta gccgttttaa tcttctgttt cgcattatta acgactccag aacatagttt
      301 ccccactgat gcagcaagat gaagacagtg tttttgagta agttgaatat gggttaagcc
      361 ttgttgttgt gccagctcaa taatcatgtt gtatttagct tccatttttc gttccttttt
      421 tagtcaaaaa tctgaatttt gggtgtaaaa agcccctccg cagtaattac ttaaccttga
      481 gcaactctac aggcgttata ttaaggagat gtttctgatg gcggatttaa ttcttgagga
      541 gcaatccaat catcgctaac ttcccagatt tcttcttgcc ctgcttgttc agggcttttt
      601 aacttaataa gcatttgata cctcacattg ttttattagc cattcaaaac cgctctacac
      661 ggtaggtttc cacttcgtag gctcgtcatc gatgatgtgc gcaaagcggt tttggatggc
      721 gaccgcagag agattcgaac tctcgaccca ctgcttagaa ggcagctgct ctatccactg
      781 aactatgcgg tcaaagtacc gttgcttaac cccaacggca gggtttactt caatctaagg
      841 aggatggctt tcaccatctc aaaccgctct ctagtccatt cgtttcgctg gataacggca
      901 ctttgggaaa acatacgcaa aaaaccaagt gaggttatcg ggctaactct ttgttgagag
      961 cggtttgaga tggtggctct tttatacttg tgagccgtca agtttcctta ttgtctctca
     1021 caacactaag gaatataatt aaatctctca cagcacaaat aaggattctt ctatgagaaa
     1081 ctatttaatt tcttacgatt tatacaaagc tgggcaaaat tacgatggat tgattagtta
     1141 tattaaaagc catcaagttt gggctgctat tcataaatca gtttggtata tcaaatctaa
     1201 taaatctgca gaacaaattc gtaatgaact gctcatttat ttagataaga acgatagtgt
     1261 ctttgttacg gatatgaata gtgctgcttg gaataatctg actgaaggaa atggtgaata
     1321 cattagacag aattggatga ggtagatata ctcccattac cagtgtttag cccatttcta
     1381 ttaattattt cgattgcgga acaacatcgt gatgcaagca tttctggatc tgaacaacca
     1441 ttccctacag ccttaagtac cgcctgtttg atgtcgtatc tatcttcatc agataggcta
     1501 ttctctacta cttttaattc caaatcttta gggcttccta gttgttcatt taaaataaca
     1561 actttcgcaa tttcaaaatt tttgtttttc ataatttacc tctagttaaa tattccaaaa
     1621 cacactttct caaatatgct ttggaatttg aaatgccgtc tctccgagct gtcacgcaat
     1681 tttagagctg cgtttgcaca atttgaattt cggttactcc cttgtgtctc aatgtacacg
     1741 cccagacttt cacctaaacc gctataaggg tatatgcttg tattcctttg cttgcaccaa
     1801 agggcataac gctttgaagt agtgggcgtt ttaagggctg cctccgactt tcgtcttcct
     1861 acttttcacc attaggctta aagcggtttt gaatttgatt tttaaagagc attgagccgt
     1921 agctcgtttt gatgggtgca ttatacctta tggtaaatat tgttgtaaat accaaaaggt
     1981 atgttaaata aggtaaaaat aaataacaaa aaggtaattt gttgatttta aa
//
LOCUS       DANMBQ010000233         2019 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.238, whole genome shotgun sequence.
ACCESSION   DANMBQ010000233 DANMBQ010000000
VERSION     DANMBQ010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2019)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2019)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.238"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            86..1027
                     /locus_tag="PXE92_002683"
     CDS             86..1027
                     /locus_tag="PXE92_002683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxL/LpxP family Kdo(2)-lipid IV(A)
                     lauroyl/palmitoleoyl acyltransferasee"
                     /protein_id="HDL5761862.1"
                     /translation="MSEKKQLPPFQTQFLHPKYWGLWLGLGVFKLILCLPYPILVKIG
                     LGLGKLFTKLGFGKRRMRIARRNLELCFPHYSAEKVEELVEENMKSVGMAIIETGMAW
                     FWSDKRILKWSKIEGLEHLTQRDQERGILLVGVHFLTLELGARIIGLHHQGVGVYRPN
                     DNPLLDWIQFRGRVRSNKAMLDRKDVRGMIRALKNGEMIWYAPDHDYGRRNSVFVPFF
                     AVEETCTTAGSYMLLRSAPKSLVIPFSPIRNLDYSGYTVKVSPAVDFSQCQNEVETAI
                     LMNRVVEREIMAALTQYMWLHRRFKTRPNEGDQSLYD"
     gene            1123..2010
                     /gene="dapA"
                     /locus_tag="PXE92_002684"
     CDS             1123..2010
                     /gene="dapA"
                     /locus_tag="PXE92_002684"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDL5761863.1"
                     /translation="MATPLFHGSIVALVTPMTHGEVDYQDLKKLVEYHIQAGSHAIVS
                     VGTTGESTTLSIDENVKVIKKTVEFADGRIPIIAGTGSNATSEAITMTKLLANSGVAG
                     CLSVVPYYNKPTQEGMYLHYKAIAESTDLPQILYNVPGRTGSDLKPETIGRLAKIENI
                     VAVKEATGDLSRLPLIKQLAGEDFIFLSGDDATGFESMKLGGQGVISVTNNVAAADMA
                     KMCELALAGQFTEAEEINNRLMALHHDLFVESNPIPVKWAAYKLGLISEPNLRLPLTT
                     LSESAQPVVLKALQQAGLI"
BASE COUNT          616 a          314 c          448 g          641 t
ORIGIN      
        1 taagtttcca aaaatttgat ctacttaaca cttttagcag tttttagcta taatgtaatc
       61 ataatctagt atgtgagaat aattaatgag tgagaaaaaa cagttacctc cattccagac
      121 acaattttta caccctaaat attggggatt gtggctcggt ttaggtgttt ttaagttaat
      181 tttatgtttg ccttatccta ttttagtaaa aattggtctg ggactaggta aattgtttac
      241 taaattgggt tttggtaaac gtcgtatgcg tattgctcgc cgtaatttag agctctgttt
      301 tccccattac tctgctgaga aagtagagga attagtcgaa gaaaatatga aatcggttgg
      361 aatggcgatt attgaaactg gtatggcttg gttttggtcg gataaacgta ttcttaaatg
      421 gtctaaaatc gaagggctag agcatttaac acagcgtgat caggaaaggg gtattttact
      481 tgtaggggtg cattttctga ctttagaact cggtgcaaga attattgggc tacatcatca
      541 aggagtaggg gtttatcgac cgaatgataa tccattatta gattggatac agtttcgagg
      601 acgtgttcgc tcaaataaag cgatgttaga tcgtaaagat gtgcgtggaa tgattcgagc
      661 tttaaaaaat ggcgagatga tatggtacgc gcctgatcac gattatggaa gacgaaatag
      721 cgtttttgta ccattttttg cagtggagga aacttgtact actgcgggta gttatatgtt
      781 acttcgttct gccccaaaga gtttagtgat cccgtttagc ccgattcgaa atttggacta
      841 ttcaggctac acagtaaaag tcagtcctgc cgttgatttt agtcaatgtc aaaatgaagt
      901 tgaaacggct attttaatga atcgggtggt agaacgtgaa attatggctg cgctaactca
      961 atatatgtgg ctacatcgcc gttttaaaac tcgcccaaat gaaggtgatc aaagcctata
     1021 tgattaattt taaataattt caaaaaagtg cttgcatatt taagctgaat tttgcaatct
     1081 agcaatgtta tcaagcataa taaaaaaata caggagatga ttatggcgac ccctttattt
     1141 cacggtagta tcgtagcatt agttacacca atgactcatg gtgaggtaga ttatcaggat
     1201 ttaaaaaaat tagttgagta tcatattcaa gcaggttctc acgctattgt atctgttggt
     1261 acaacaggtg aatctaccac attaagcatt gatgaaaatg ttaaggtgat taagaaaacg
     1321 gttgaatttg ctgatggacg tattccaatt attgcaggaa ctggttctaa tgcgaccagt
     1381 gaagctatca ctatgactaa attattagca aacagtggtg tagctggttg tttaagtgta
     1441 gtgccttatt acaacaagcc aacgcaagag gggatgtact tacactacaa agcgattgca
     1501 gaaagtacag atttaccaca aattctgtat aatgtgccgg ggcgaacagg gagtgattta
     1561 aaacctgaaa caatcggtcg cttagcgaaa attgagaata ttgttgctgt gaaagaagca
     1621 acgggtgatt taagccgctt acctttaatt aagcaattag ccggtgaaga ttttattttc
     1681 ttaagtggtg atgatgctac cggttttgag tctatgaaat taggtggtca aggggtgatc
     1741 tcggtcacca ataatgttgc tgctgctgat atggcaaaaa tgtgtgagtt agctcttgcc
     1801 ggtcaattta ctgaagcaga agaaattaat aaccgcttaa tggcgttaca ccatgactta
     1861 tttgtcgaat ctaacccgat tccggtgaaa tgggctgctt ataaattagg tttaattagt
     1921 gagcctaatt tacgtttacc gcttaccaca ctgtctgaat cagcacagcc tgtagtgtta
     1981 aaagcattac aacaagcggg cttaatttag ttatttttt
//
LOCUS       DANMBQ010000234         1981 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.239, whole genome shotgun sequence.
ACCESSION   DANMBQ010000234 DANMBQ010000000
VERSION     DANMBQ010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1981
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.239"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(473..796)
                     /locus_tag="PXE92_002685"
     CDS             complement(473..796)
                     /locus_tag="PXE92_002685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL5761864.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNNVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
     gene            complement(774..1049)
                     /locus_tag="PXE92_002686"
     CDS             complement(774..1049)
                     /locus_tag="PXE92_002686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5761865.1"
                     /translation="MAKATVARRIKNAINGNFGDHKSLAGTGGLYEMRIATGAGYRIY
                     YAQQGNVIYILLHGGDKSTQQADIEKAKALWAELKTTGESNGNNTNQ"
BASE COUNT          596 a          336 c          344 g          705 t
ORIGIN      
        1 ctaagataca atgcaactaa agaagacaat aagagactat aaaataatct aagttcttga
       61 ttttatagta aatttgagac agtgaaagac aatatgcaac gcttaaatgg tccccagccg
      121 agtttgaatt gtatgctatg aggcttgtta ttattgagaa gtgcatttaa gacttgttaa
      181 acataccctt aaatgtaccc ttaaaatgaa aagtcattaa gaaatactgc tagtttgtgg
      241 ggcatttaat atcattccgc catttgtggc aagttttgat tttatacatt ggtttgtgtc
      301 gttttgtaca aaatcacaag cggtcatatt tcattaaggt tttgcgaaaa cttgccccgt
      361 attgatccgc aatcggtgcg taattggtac agaattaagc aataaaaaag ccgttaatat
      421 caatcaacgg ctatttgaat gtgaggtttt ggcaggtagc aagtgataag ttttagccat
      481 ttttgacttg tggaataagc actaaattga atgcccctag aattttttga atagtgtcaa
      541 agcgtggttt gctgcctttg gctagggttt tatataggct ctctctccct agccctgttt
      601 gcttggcaag ctccgccatt ccccttgccc ttgccacatt gttcaaggct tctaaaaatt
      661 cgtcttggtc gccctctttt aacacttccg ctaaataggc ttgaatagtt gcctcatcgg
      721 ttaaaaactc cgccacgtca aaagggcgta aaccgtgctt ttctgctgcc tgttcattga
      781 tttgtattgt ttccattgct ttcccctgta gtttttaatt cagcccataa tgctttcgct
      841 ttctctatat cggcttgctg tgttgattta tcgccgccgt gtaacaagat ataaattaca
      901 tttccttgtt gtgcgtaata aattctatat ccggctcctg ttgctatccg catttcataa
      961 agtccgcctg taccggctaa agatttatga tcgccaaagt tgccattaat cgcatttttt
     1021 atccgccttg ctaccgttgc ttttgcgata gggttcttta aattctcaag ctattttgaa
     1081 aaattatcgg taatgatgat ttgattagtg gtttgctctg tcattgccag cctcttattc
     1141 tatttattgc ttagtgtatc cattaagata caaataatca agtggttaaa ttttgaaaag
     1201 agagcagttt caattattca tatcattgaa cattgttcac gcttttaaat tatgtagcat
     1261 aaaattacaa tttgggtaga tttggatttt tatcaaaaat cacttttcca aaacactttt
     1321 ataaaatata gaaaaaagta taggacaatt aggacaatag gacaattcta ggattttcaa
     1381 gggttcatcg cccctaaaat tgtcctattg gcataggaca atataggaca atataggaca
     1441 attctaggac aaaatagtaa actgttcatt ttttgatagg acaaaaaccc ctgaaaatag
     1501 gacaaaaaca ccctaaaata ggacaatttc agcgttaata ggacaaaaat tcaatattaa
     1561 atcattgata tataaaggtt tagtaaaaat tgtcctaatt gtcctataaa aaaacagcta
     1621 tttttctata tgattttttt atgattgttt ggcggaattt tggttgaaat ttaaatgtaa
     1681 attatatgct tcataatttc atattttatg ggttttgtga ttgtgatcat aatacacatt
     1741 aaagaggttt caggacgata taaaaaaggc tctctaaata gattagaaag ccttgatatt
     1801 gtatgcggtt atcccatcgt ggttgaaaaa cttagagtaa ggttctttat tatcttcaac
     1861 aagacgataa gcctctgata catacctttt acatcttttt ctttgcttat taagttgtct
     1921 atctgccaga tttttagctg ttcctatttt ctttaattca tcggaagtca gtgattttaa
     1981 t
//
LOCUS       DANMBQ010000235         1962 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.240, whole genome shotgun sequence.
ACCESSION   DANMBQ010000235 DANMBQ010000000
VERSION     DANMBQ010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1962
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.240"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..1783)
                     /locus_tag="PXE92_002687"
     rRNA            complement(<1..1783)
                     /locus_tag="PXE92_002687"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          439 a          563 c          361 g          599 t
ORIGIN      
        1 ttaataaaca gttgcagcca gctggtatct tcgaccggtt caaccttcat ccgcaaggga
       61 ctacaatcta cgccggcgca ccttctcccg aagttacggt gctattttgc ctagttcctt
      121 cacccgagtt ctctcaagcg cctgagtatt ctctacctga ccacctgtgt cggtttatag
      181 tacggtttat aataacctga agcttagtgg cttttcctgg aagcgtggta tcgattactt
      241 catctccgta gagactcgtc atcacttctc ggtgttaagg aagaccggat ttgcctaatc
      301 ttcccaccta ccggcttaaa cagacatcca acagtctgct aacctaacct tctccgtccc
      361 cacatcgcag ttattacaag tacgggaata ttaacccgtt tcccatcgac tacgcttttc
      421 agcctcgcct taggggccga ctcaccctgc cccgattaac gttggacagg aacccttggt
      481 cttccggcga acgagttttt cactcgtttt atcgttactt atgtcagcat tcgcacttgt
      541 gatatctcca gcagacttct caatccacct tcatcgactt acacaacgct cccctaccca
      601 acagactttc gtctgatgcc gcagcttcgg tgctatattt gagccccgtt acatcttccg
      661 cgcaggccga ctcgactagt gagctattac gctttcttta aatggtggct gcttctaagc
      721 caacatccta gctgtctaag ccttcccact tcgtttccca cttaatatag actttgggac
      781 cttagctggc ggtctgggtt gtttccctct ccacgatgga cgttagcacc caccgtgtgt
      841 ctcctgagta tcactcttcg gtattcgcag tttgcatcgg gttggtaatc cgggatggac
      901 ccctagccga aacagtgctc tacccccgaa ggtgtccgct caaggctcta cctaaataga
      961 tttcggggag aaccagctat ctcccggttt gattggcctt tcacccccag ccacaagtca
     1021 tccgctaatt tttcaacatt agtcggttcg gtcctccagt tagtgttacc caaccttcaa
     1081 cctgcccatg gctagatcac cgggtttcgg gtctatacct tgcaactaca cgcccagtta
     1141 agactcggtt tccctacggc tcccttattc agttaacctt gctacaaaat ataagtcgct
     1201 gacccattat acaaaaggta cgcagtcaca agattactct tgctcccact gcttgtacgc
     1261 acaaggtttc aggttctatt tcactcccct cgccggggtt cttttcacct ttccttcaca
     1321 gtactggttc actatcggtc aatcaggagt atttagcctt ggaggatggt ccccccatct
     1381 tcaaacagga tatcacgtgt cccgccctac ttgttgttag cctagtacca caatggagtt
     1441 ttaaggtacg ggattatcac cctctacgat tgtccttccc agaacattcc cctaacttta
     1501 ctgctatcac taactggctc tttcgcgttc gctcgccgct actaacgaaa tctcggttga
     1561 tttcttttcc tcggggtact tagatgtttc agttctcccg gtttgcctca cacagctatg
     1621 tattcactgg gtgatagtag gttcttcacc tactgggttt ccccattcgg acatcttgga
     1681 ttaaacgcct cttatcgact catccaagct tttcgcagat tagcacgtcc ttcttcgcct
     1741 ctgattgcca aggcatccac cttgtgcgct tagtcactta actatacaac ctcaaatgtt
     1801 ttctaaaact tctcaaaaat aaaagtaaaa aaacaatgaa gtcagtttta caactaaaca
     1861 cttgactgct tttgttcagt caagattttt tctactcaga ctttcaattt attcgttatc
     1921 acttatgtat aattacttat gcgtaacgaa cttgaaatat ct
//
LOCUS       DANMBQ010000236         1952 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.241, whole genome shotgun sequence.
ACCESSION   DANMBQ010000236 DANMBQ010000000
VERSION     DANMBQ010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.241"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..633)
                     /locus_tag="PXE92_002688"
     CDS             complement(<1..633)
                     /locus_tag="PXE92_002688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HDL5761866.1"
                     /translation="MAEGLLLTPYFQTEVGIVFYKVPKDVSPAAFGERTLLQPAPTDL
                     ATVKSGKVANFSANSTACKELAVFAKSAKVRSTLNQRDKYSNDLPYIRFVKSIQTCQC
                     RDGKYCHTEKVLVENKNGAVQLCWHHDKMRMDGEIPNEKLEALADENWEKFIAQQIRL
                     TLRKTQSTAIEFADLVLFASIKGLLDELDSKALQQFLGYPPLNNSGVSKES"
     gene            complement(760..1353)
                     /locus_tag="PXE92_002689"
     CDS             complement(760..1353)
                     /locus_tag="PXE92_002689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5761867.1"
                     /translation="MTDFDKNTYQTPNYVRNWLNHRYAWFHIDGCSNGQNTLYTYWIG
                     RAADGLDDDKLSCQIADDFLADDLFDVLLDKVSDWGELLRIFVNPPYSDPLPFVQRAA
                     ELKKAGHLVVMLLPADKTTEWYTIIQQHANEVIDIIGYHDEKGTWRTGRIQFINPVTG
                     KPAQGNNKGSMIVVFDPFIEGIVTRQMPLDKIKEWGK"
     gene            complement(1364..>1952)
                     /locus_tag="PXE92_002690"
     CDS             complement(1364..>1952)
                     /locus_tag="PXE92_002690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="conserved phage C-terminal domain-containing
                     protein"
                     /protein_id="HDL5761868.1"
                     /translation="PAGEPAPAEVVLNYLNSALVTLAVQLGERKPVGYSLKPWAKNIT
                     ARIRESSVADCCQVVDYLVAKWGRDEKMREYLCPKTIFRQSNFADYFPKSTAWANNGK
                     PVCVNGKWVTPAELEKRLIMPTVDEVRALFQKSLSGNPFKALDFTNKRNLVMYHATIN
                     TRNKRPLERDLPMIISQEIKNAVERIDRLRVPTFS"
BASE COUNT          537 a          466 c          365 g          584 t
ORIGIN      
        1 actttctttg ctcacaccgc tattattcag tggtggatag ccgagaaact gctgtaatgc
       61 cttgctgtct aattcatcaa gcaaaccttt gatactcgca aacaacacta agtccgcaaa
      121 ttcaatagcg gtagattgcg ttttgcgtaa ggttaagcgg atttgttggg cgataaattt
      181 ttcccagttt tcatccgcta gtgcttctaa tttttcattc gggatttcac cgtccattcg
      241 cattttgtcg tgatgccaac aaagctgtac cgcaccgttt ttattctcta ccagcacttt
      301 ttccgtgtgg caatatttgc catctcggca ttggcacgtc tgaattgact ttacaaaccg
      361 gatataaggc aaatcattac tatatttgtc acgctgattt agcgttgaac gaacttttgc
      421 cgatttagca aacaccgcca gctctttaca agcggtcgaa tttgccgaaa aatttgcaac
      481 cttgcctgat ttaaccgtcg ctaaatcggt cggtgcaggt tgcaacaaag ttcgctcacc
      541 gaaagcagca ggagaaacat ctttaggcac tttgtaaaac acaataccca cttcggtttg
      601 aaagtaaggg gtaagtagca aaccttccgc cattattgcc cccatttctc ggtttcatca
      661 taggctttca cgaatagcat aaatacgcca atacagatta aaaaaatcag tacgccaatt
      721 actgcaccaa taccaataaa tagttcccaa taatccattt tatttacccc attccttgat
      781 tttatctagt ggcatctgac gagttacaat gccctcaata aatgggtcaa acacaacaat
      841 catcgagcct ttattattac cttgtgccgg tttacctgtt accgggttga taaattgaat
      901 ccgccctgtc cgccaagtgc ctttttcatc gtgatagcca ataatatcaa ttacctcatt
      961 agcgtgttgt tgaatgatgg tgtaccattc tgttgtttta tccgctggta ataacatcac
     1021 aaccaaatga cctgcttttt tcaattctgc cgctcgttga acaaaaggca gtggatcaga
     1081 atatggcgga ttaacgaaaa tacgcagtaa ttctccccag tctgaaactt tatctagtag
     1141 cacatcaaat aaatcatcgg ctaaaaaatc atcggcaatt tggcaactta atttatcatc
     1201 atctaaaccg tctgccgctc taccaatcca ataggtgtac aacgtatttt gtccgttaga
     1261 gcaaccgtca atatgaaacc aagcataacg atgatttagc caattacgca cataattagg
     1321 tgtttggtaa gtgtttttat caaaatctgt cattgtctaa tccttacgaa aatgttggta
     1381 ctctcaaacg gtcgatacgc tcaaccgcat ttttaatttc ttggctgata atcatcggca
     1441 aatcacgttc aagtggtcgc ttgtttctgg tgttgattgt ggcgtggtac atcactaaat
     1501 ttcgtttgtt ggtaaagtcc aatgccttaa acggattgcc actgagtgat ttctggaaca
     1561 aggctcgtac ttcgtccacc gttggcataa tcaagcgttt ttccagctcc gccggtgtaa
     1621 cccacttacc atttacgcaa acaggctttc cgttattagc ccaagcggtc gattttggaa
     1681 aataatctgc aaaattcgat tggcggaaaa tcgttttcgg gcagaggtat tcacgcattt
     1741 tttcatctcg tccccattta gcgacaaggt aatccaccac ttggcaacag tccgccaccg
     1801 aactttcacg aatgcgagca gtaatatttt ttgcccacgg cttgagcgaa taccccacag
     1861 gcttacgctc accaagctgt accgccaacg ttaccaaagc cgaattgaga taattcaaca
     1921 caacttcagc cggggcaggt tcccccgctg gg
//
LOCUS       DANMBQ010000237         1881 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.242, whole genome shotgun sequence.
ACCESSION   DANMBQ010000237 DANMBQ010000000
VERSION     DANMBQ010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1881
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.242"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..588
                     /locus_tag="PXE92_002691"
     CDS             <1..588
                     /locus_tag="PXE92_002691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5761869.1"
                     /translation="SDLDYIKAEAQGELVAVVHSHPEPNGKPVLSTLDRKMQVQTGLD
                     WWLVHNQKIHKFRNVPHLIGREFKHGTMDCYTLYRDAYMLAGYEMDEFERQDDWWHTG
                     QNLYLDNIQGQGFERVETPQIGDVILMQVGADVPNHAAIYIGDQMVVHHSPNRLSKRD
                     LYDGYWLRHTHSIWRHKLAEKLDFDGILNDIAVNN"
     gene            857..1486
                     /locus_tag="PXE92_002692"
     CDS             857..1486
                     /locus_tag="PXE92_002692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL5761870.1"
                     /translation="MITVKFYGHLKTFGTDFKILVKDIAEAIRALCSQLKGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVVKGAKSGGIFQAVLGVALIGAA
                     FALGPIGLGLVGSATAMTVGAMGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSN
                     LNNLVAQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK"
     gene            1496..>1881
                     /locus_tag="PXE92_002693"
     CDS             1496..>1881
                     /locus_tag="PXE92_002693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761871.1"
                     /translation="MRIYGAKGGGGSSHTPIEAPETGRSKQIVNIVELLCEGEIEGLV
                     DGFKSIYLDGTQIQNDDGTYNFNNVSGQLNVGTQDQDVLDGYDSSQNEVNVGVEIKKK
                     NGAIVRTVTDERINRLRLTLGVRSLF"
BASE COUNT          569 a          364 c          454 g          494 t
ORIGIN      
        1 tctgatcttg attacatcaa agcagaagca caaggcgagc tggtggcggt agttcattca
       61 caccctgagc caaacggcaa gccggtactc tctacccttg atcgcaaaat gcaagtacag
      121 accggtttag attggtggct ggtacataat caaaaaatcc ataaattcag gaatgtgccg
      181 catttaatcg ggcgtgagtt taaacacggt acaatggatt gttacacgct ctaccgtgat
      241 gcctatatgc ttgccggtta cgagatggac gagttcgagc gacaagatga ctggtggcat
      301 accgggcaaa atctctattt ggataatatt caagggcaag gctttgagcg agtggaaacc
      361 ccacaaatcg gcgatgtgat tttaatgcaa gtaggtgctg atgtgccgaa ccacgctgcc
      421 atttacattg gcgatcagat ggtagtccat catagcccca accgattatc taagcgtgat
      481 ttatacgacg gctactggtt acgccatacc cacagtattt ggcggcataa actggcggag
      541 aagttagatt ttgatggcat attgaatgat attgctgtaa ataactaaca aaaaatgacc
      601 gcttgtaaca aaaacaaacc ccgaagcgtt tgcagcactt cggggttttt catatccact
      661 tacctaacta agaggacata aattaaatga atgataaacg atttacattc aaatttctag
      721 gagttcttat ggaagcaata aatattaccc caaaagaaat cagaaaaaca atgtggacag
      781 ccgcaataat tctctttttg tttgcgttca tctggaaagc ccctgaattt atcactgcta
      841 ttcgttggtg gtaactatga ttacagttaa attttacgga caccttaaaa cattcggcac
      901 agattttaaa attttagtta aagacatcgc tgaggcaatt cgtgctctgt gttcacagct
      961 taaaggattg cgtgaagcgt tgcgagacgg tgtttataaa gtccgtatcg gtaagcagta
     1021 tttagaccca tcagcccttg aaaaagggct tttttattgc ctgaagaaag ggcaaaccat
     1081 tcattttacc cctgttgtca aaggagcgaa aagcggtggt atttttcaag cggtgttagg
     1141 tgtggcgtta attggggctg catttgcgtt aggtcctatc ggcttaggat tggttggctc
     1201 tgctacagca atgacagttg gagcaatggg ggcatcaatg ttactaggag gagtttccca
     1261 aatgctcacc aaaatgccaa aagcccccac aatgggtaat gaaacagaaa aagaaagctc
     1321 aacggctttt tcaaatttaa ataacttggt ggctcaaggc aaacctgtgc cgttggctta
     1381 tggtttgatt cgtaccggct cgctggtgat atcgcaggga gttgagacga tcaccattaa
     1441 agaaaaccaa ccggcaagca acaagaaaac cggctttaga aaataaggga taattatgcg
     1501 tatttacgga gcaaaaggtg gtggcggcag tagccatacc ccgattgaag caccggaaac
     1561 cggtcgctca aaacagattg tgaatattgt ggaattgctg tgcgagggcg aaattgaagg
     1621 cttggttgat ggctttaaat cgatttacct agacggcacg cagatccaaa acgatgacgg
     1681 cacctataat tttaataatg tgagcggtca gctaaatgtc ggtacgcaag atcaagatgt
     1741 gttggacggt tacgatagct cacagaatga agtgaatgtg ggtgttgaga ttaagaaaaa
     1801 gaatggggct attgtccgca ccgtaactga tgaacgaatt aaccgcttgc gtttaacgtt
     1861 gggagtaagg tcattattcc a
//
LOCUS       DANMBQ010000238         1782 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.243, whole genome shotgun sequence.
ACCESSION   DANMBQ010000238 DANMBQ010000000
VERSION     DANMBQ010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1782)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1782)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1782
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.243"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(61..477)
                     /gene="tnpA"
                     /locus_tag="PXE92_002694"
     CDS             complement(61..477)
                     /gene="tnpA"
                     /locus_tag="PXE92_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005720092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HDL5761872.1"
                     /translation="MKKETEIRRGRHVVFNLHVHLVFVTKYRREVFTQAILNDLHSIF
                     ATICADFEATLVEFDGEDDHVHLLVEYPPKVAISHLVNSLKGVSSRMIRKKNYPSIRK
                     KLWGNQLWSPSYFAGSCGGAPISIIRQYIEQQQTPD"
     gene            524..1660
                     /locus_tag="PXE92_002695"
     CDS             524..1660
                     /locus_tag="PXE92_002695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5761873.1"
                     /translation="MLLRKAFKFEIRPNGEQVRKMKQFCGCSRFVFNKALAWQNEQYE
                     QDNHHKFSYTKLANLLPQWKKELVWLKDCHSQVLQQSLKDLESAFKNFFQKRADLPKF
                     KKKGVKESFRFPQGCKIEQKNDRLYLPKIGWVRYRNSREIVGEVKNVTVSMKCGRFFV
                     SIQTEFKQEIPTHKGGEIGIDMGIARFATLSNGEFFEPLNAFKTHKGKLAKLQKQLKN
                     KVKFSKNWQKLKDKIGKLHHKIANCRKDFLHKISTQISKNHAMIYVEDLQVANMSKSA
                     KGTAEVHGKNVKQKSGLNRVILDQSWFEFRRQLDYKTQWLGGFLLAVPPQNTSRTCPC
                     CNYTAKENRQTQENFECVECGYTENADVVGAMNVLTRGQAIVQA"
BASE COUNT          607 a          348 c          372 g          455 t
ORIGIN      
        1 accacgtcct ttagggcgtg gatataaggt ataaacggca aagccgtttc aaatttctaa
       61 ctaatcaggt gtttgttgtt gctcgatata ttggcgaata atcgatattg gtgcaccacc
      121 acaactacca gcaaagtaag acggtgacca aagttgattt ccccataatt ttttgcgaat
      181 gctcggatag tttttctttc taatcattcg gctcgaaacg ccttttaaac tgtttacaag
      241 atgagaaata gcgactttag gcggatattc cacaagtaga tgaacgtgat catcttcacc
      301 atcaaattcc actaatgtgg cttcaaaatc agcacaaatc gttgcaaaaa ttgagtgtaa
      361 gtcgttcaaa attgcttgag taaaaacttc cctgcgatat ttagtcacga aaactaaatg
      421 aacgtgtaag ttaaaaacaa cgtggcgacc acgtctaatc tctgtttctt ttttcatagg
      481 ccaagtgtag aataagcaca atttttgtat tctaattcgt gcaatgttac tacgtaaagc
      541 ctttaaattt gaaatcagac caaatgggga acaagttcgc aaaatgaagc agttttgcgg
      601 ctgttctcgc tttgtgttta acaaggcatt ggcgtggcaa aatgagcagt acgaacaaga
      661 taaccatcac aaattcagtt ataccaagct cgccaacttg cttccgcaat ggaaaaaaga
      721 attggtatgg cttaaagatt gccattcaca agtgcttcaa cagtcgttaa aagaccttga
      781 aagtgcgttt aaaaacttct ttcaaaagcg tgcggatttg cccaaattca agaaaaaagg
      841 cgtaaaagag agtttccgtt ttccgcaagg ttgcaaaatc gagcagaaaa acgaccgctt
      901 gtatctgccg aaaatcggtt gggtgcgtta tcgcaacagt cgtgaaattg ttggggaagt
      961 aaaaaatgtc accgtttcaa tgaaatgcgg acgctttttt gtgagcattc aaacggaatt
     1021 taaacaggaa attcccacgc ataaaggcgg agaaatcggc attgatatgg gcattgctcg
     1081 ttttgcaacc ctttccaatg gagaattttt tgagccgtta aatgcgttta aaacccacaa
     1141 aggaaaattg gcaaaactgc aaaaacagct aaaaaataaa gtgaagttca gtaaaaactg
     1201 gcaaaaactg aaagataaaa tcggcaagtt acatcacaaa atcgccaact gccgaaaaga
     1261 tttcctgcat aaaatctcaa cgcaaatcag caaaaaccac gcgatgatct atgttgaaga
     1321 tttgcaagtg gcgaatatgt ccaaatcagc caaaggcaca gcggaagtac acggcaaaaa
     1381 tgtgaaacag aaatcaggct taaaccgagt gatattagac cagtcttggt ttgaatttag
     1441 acgacaactg gactacaaaa cgcaatggtt aggcggattt ttgctagcag ttcctccaca
     1501 aaataccagt cgtacttgcc cttgttgcaa ctatacagca aaagaaaatc gccaaacaca
     1561 ggaaaatttt gaatgcgtag aatgtggcta tacggaaaat gccgatgtag tgggagcaat
     1621 gaatgttctt acacgtgggc aagcaatagt ccaagcataa taaatatcag ggtaggacat
     1681 acccgaagcg tctatgaagt gaatctcaat agagatcagc agtagaaacc caccgagagt
     1741 agcccacagc ttgctgtggg agctagtagg aatcccctgc ct
//
LOCUS       DANMBQ010000239         1739 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.244, whole genome shotgun sequence.
ACCESSION   DANMBQ010000239 DANMBQ010000000
VERSION     DANMBQ010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.244"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(25..1564)
                     /locus_tag="PXE92_002696"
     rRNA            complement(25..1564)
                     /locus_tag="PXE92_002696"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          408 a          523 c          347 g          461 t
ORIGIN      
        1 acttgctgtc gttctcgatt ttggtaagga ggtgatccaa ccgcaggttc ccctacggtt
       61 accttgttac gacttcaccc cagtcatgaa tcataccgtg gtaaacgccc ccctttcggt
      121 taagctatct acttctggta caacccactc ccatggtgtg acgggcggtg tgtacaaggc
      181 ccgggaacgt attcaccgca acattctgat ttgcgattac tagcgattcc gacttcatgg
      241 agtcgagttg cagactccaa tccggactta gacgtacttt ctgagattcg ctccccatcg
      301 ctggctcgcc gccctctgta tacgccattg tagcacgtgt gtagccctac tcgtaagggc
      361 catgatgact tgacgtcatc cccaccttcc tccggtttat caccggcagt ctcctttgag
      421 ttcccgacct aatcgctggc aacaaaggat aagggttgcg ctcgttgcgg gacttaaccc
      481 aacatttcac aacacgagct gacgacagcc atgcagcacc tgtctcatgg ttcccgaagg
      541 cactctcata tctctacaag attccatgga tgtcaagagt aggtaaggtt cttcgcgttg
      601 catcgaatta aaccacatgc tccaccgctt gtgcgggccc ccgtcaattc atttgagttt
      661 taaccttgcg gccgtactcc ccaggcggtc gatttatcac gttagctacg ggcaccagag
      721 ttaaacccca atccccaaat cgacagcgtt tacggcgtgg actaccaggg tatctaatcc
      781 tgtttgctcc ccacgctttc gcacatgagc gtcagtacat tcccaagggg ctgccttcgc
      841 cttcggtatt cctccacatc tctacgcatt tcaccgctac acgtggaatt ctacccctcc
      901 ctaaagtact ctagttgtcc agtctgaaat gcaattccca ggttaagccc ggggctttca
      961 cacctcactt aaacaaccgc ctgcgtgccc tttacgccca gttattccga ttaacgctcg
     1021 caccccccgt attaccgcgg ctgctggcac ggagttagcc ggtgcttctt ctgtgattaa
     1081 cgtcaatcga ctgttctatt aaaacaatcg ccttcctcgt caccgaaaga actttacaac
     1141 ccgaaggcct tcttcattca cgcggcatgg ctgcatcagg gttcccccca ttgtgcaata
     1201 ttccccactg ctgcctcccg taggagtctg gaccgtgtct cagttccagt gtggctggtc
     1261 atcctctcag accagctaga gatcgcgggc ttggtgagcc tttacctcac caactaccta
     1321 atcccacttg ggctcatctt atggcaggtg gccaaatggt cccacccttt agtcctaaga
     1381 cattacgcgg tattagctac cgtttccagt agttatcccc ctccataagc cagattccca
     1441 agcattactc acccgtccgc cactcgtcac ccaaggagca aactcctatg tgctaccgtt
     1501 cgacttgcat gtgttaagcc tgccgccagc gttcaatctg agccatgatc aaactcttca
     1561 attcaaaaag tttaatcgct caatactgct gacataaaat cgcacttcca aatttaaacc
     1621 taattaaaat taagttaaaa gaaagtaatg aatttctagt tagcacctat taagacttca
     1681 aaattaaaaa aatgtttttc aatcaagtca atcaacaagt gcccacacag attgtctga
//
LOCUS       DANMBQ010000240         1708 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.245, whole genome shotgun sequence.
ACCESSION   DANMBQ010000240 DANMBQ010000000
VERSION     DANMBQ010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.245"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..259
                     /locus_tag="PXE92_002697"
     CDS             <1..259
                     /locus_tag="PXE92_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5761874.1"
                     /translation="TYRSYDALDVSEFHHERINHSELFAEKQNHINGIENFWNQAKRV
                     LRKYNGINRKNFPLFLKECEFRFNFGTPKEQLKTLRKWCEI"
     gene            399..1469
                     /locus_tag="PXE92_002698"
     CDS             399..1469
                     /locus_tag="PXE92_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761875.1"
                     /translation="MKFNKKLILTFAATLVLSACGGSGSGGSSSTPNHPKPVLVPKTQ
                     NNLQAQNVPQAQNASQAQNAPQAQNAPQAQNAPQVENAPQAQNAPQVENAPQAEVTPP
                     VPQPQSQKIDGSFDKIGSVKLNKEAQTLELSRFTLVDKLGTPPKFDKVSGKKIIEEKD
                     FLVLNLSDINAEQLSGDFLIRRSDDLFYGYYHDTNGKNLVDAADKFSQYFVVYDEKRV
                     NDNISDKLTATYRKKEGFVYGSNPHTKEFAARISKLGDVEIKFENGQAQGSIKDEKDG
                     NAEIFTIKGDTKQLEITPTESNRIIIAILDQNQKSYTPGMEKAIMETKFIDSKAGNSD
                     QKYLIGEAKSDNWQAIMVSEKK"
BASE COUNT          608 a          321 c          308 g          471 t
ORIGIN      
        1 tacctatcgt agctatgatg cccttgatgt gagcgaattt catcacgagc gaatcaacca
       61 ttccgaactg tttgcggaga aacaaaacca tatcaatggc attgaaaatt tttggaatca
      121 agcgaagcga gtactccgaa aatataacgg aattaaccga aaaaatttcc ctttattctt
      181 gaaggaatgt gaatttcggt ttaactttgg tacaccaaaa gaacagctca aaacgttgcg
      241 aaaatggtgt gagatttagg gctaatctac tacagcccca aaaattttca taagggaaac
      301 gtttacgtaa aactcctcag accactcatt cttattttat ataaaaatat gtgatagact
      361 tctcgcagtt tcgttttata tatttaagga ataactaagt gaaattcaat aaaaaattaa
      421 ttttaacatt tgctgcaacc ttagttttaa gtgcttgcgg aggaagcggt agcggaggtt
      481 cgtcttcaac accgaatcac cccaaaccag tactagtacc aaaaacacaa aataatcttc
      541 aagcacaaaa tgttcctcag gcacaaaatg cctctcaggc acaaaatgcc cctcaggcac
      601 aaaatgctcc tcaggcacaa aatgctcctc aggtggaaaa tgctcctcag gcacaaaatg
      661 ctcctcaggt agaaaatgct cctcaagcag aggttactcc gcctgtacca cagccacaat
      721 cacaaaaaat tgacggttct tttgataaaa ttggttcagt aaaactcaat aaagaggctc
      781 aaactcttga gcttagtaga ttcactttgg tggataaatt aggcacacca ccgaagtttg
      841 ataaagtaag cggtaaaaaa attattgaag aaaaagattt tctcgtatta aatttgtctg
      901 atattaatgc tgaacaactc tctggcgatt ttcttattcg ccgtagcgat gatctattct
      961 atggctacta tcacgataca aatggcaaaa atcttgtcga tgctgccgat aaattcagtc
     1021 aatattttgt cgtgtatgat gagaaacggg taaatgataa tatctctgat aaattaacag
     1081 caacttaccg taaaaaagaa ggctttgtat atggttcaaa tccacatact aaagaatttg
     1141 ccgcacggat cagcaaattg ggggatgtag aaattaaatt tgaaaatggt caagctcaag
     1201 gaagtataaa agacgaaaaa gatggaaatg ctgagatctt tactattaaa ggtgatacaa
     1261 aacagttaga gattacccca acggaaagta accgaatcat tatagcaatt ttagaccaaa
     1321 atcaaaaaag ctatactcca ggaatggaaa aagcaattat ggaaactaag tttattgatt
     1381 caaaggctgg taattccgac caaaaatact taatcggtga agcaaaaagc gataactggc
     1441 aagcaataat ggttagcgag aaaaaataaa gttatctttt gctaaaaact gaaataaaaa
     1501 ggctgagtcc gggtaatatc ggcctcagtc ttttaaattg tagaaaatca tctgtagaag
     1561 atcaaaccta atctgacagt cccccgtttt aaattaccgt gtctgtcaga ttaatttgag
     1621 cttaaattct tttccaccca aatccgtttt ccatcaagta aggttgccat cggtgttctg
     1681 ccatagcaca tttttccttg atgtgttc
//
LOCUS       DANMBQ010000241         1697 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.246, whole genome shotgun sequence.
ACCESSION   DANMBQ010000241 DANMBQ010000000
VERSION     DANMBQ010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.246"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..156
                     /locus_tag="PXE92_002699"
     CDS             <1..156
                     /locus_tag="PXE92_002699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761876.1"
                     /translation="MARIEKEQPLEKTLILYSEQLASFEQKSPMALHREKFEAKPTGL
                     AELINNL"
     gene            167..1117
                     /locus_tag="PXE92_002700"
     CDS             167..1117
                     /locus_tag="PXE92_002700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P2 family phage major capsid protein"
                     /protein_id="HDL5761877.1"
                     /translation="MSLSTFAHALKLDKQGNVILFDDSPEEQAKLISRLKQNRLFKLL
                     NLVQTKHAKGEAIGLFTPIAGTTNTESGEEREPKQALAPAQKYHCEQINIDSYIRYEK
                     IDAYNLENSLEERLNQLLDDNLLRGLLMVGWQGVSRADTSNATNNQLAQDVKKGWLQK
                     IREGKPEAVINGATIGKEQQYKSLNALIKQGLGKISPAYAMGGDMIAICGRDIIADDV
                     IQLEHNDLSENLADLLTLCQQAKGGLKAVSIPYFPSNAILITRLDNLSLYLHLNNIRR
                     KAFDTPQKDSVETFYSLNVDYIVEDFNACCLIENIEVIEE"
     gene            1114..1308
                     /locus_tag="PXE92_002701"
     CDS             1114..1308
                     /locus_tag="PXE92_002701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761878.1"
                     /translation="MSLESYIQQAEEMELLEKLDFVSDLLELEKVSEIEAYRILTAHG
                     EPKPQPAQEKLIGCVDFLDD"
     gene            1426..>1697
                     /locus_tag="PXE92_002702"
     CDS             1426..>1697
                     /locus_tag="PXE92_002702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761879.1"
                     /translation="MTNYKLPARKWYTLEQATKRIKQLTGEDIEIEDLLHYWYLRKLE
                     LSIYLNRNGNGDLIIGNHSFNKEEYIVLEQPQIIIREDGSIELEGK"
BASE COUNT          635 a          334 c          323 g          405 t
ORIGIN      
        1 atggctagaa ttgaaaagga acagccactt gaaaaaacat taattcttta ttctgaacag
       61 ttagcaagtt ttgaacaaaa atcgccaatg gcattacacc gtgaaaaatt tgaagcaaaa
      121 cctaccggct tagctgaatt aattaataac ttataagagg taaaaaatga gtttatccac
      181 tttcgcccac gcattaaaac tagataaaca aggtaacgtt attttatttg acgatagccc
      241 cgaagaacag gcaaaactaa ttagccgctt aaaacaaaat cgccttttta aattattgaa
      301 tttagtgcaa accaagcacg caaagggcga agcgattggg ctattcacac cgatagccgg
      361 cacaaccaac accgaaagcg gagaggaacg agagccaaaa caagcccttg cacccgctca
      421 aaaataccac tgcgaacaaa tcaacattga tagctatatt cgctatgaaa aaatcgatgc
      481 ttacaacctc gaaaacagct tagaagaacg cttaaatcag ttacttgatg acaaccttct
      541 aagagggctt ttaatggttg gctggcaagg cgtaagccgt gcagatacat caaacgcgac
      601 aaacaaccaa ctcgcccaag acgtgaaaaa aggctggcta caaaaaatca gagagggcaa
      661 gcccgaagcg gtaattaatg gagcaaccat aggcaaagag caacaataca aaagcctaaa
      721 tgctctgatt aagcagggat taggcaaaat tagcccagcg tatgcaatgg gcggagatat
      781 gatcgccatt tgtgggcggg atattatcgc tgatgatgta attcagcttg aacacaacga
      841 tttaagcgaa aacctagccg acttattaac cttatgccaa caagctaaag gcggactaaa
      901 agcggtaagt attccctact tcccaagcaa tgcgatttta atcactcgat tagataacct
      961 ttcgctatat cttcatttaa acaatatccg ccgtaaagcg tttgatacgc cacaaaaaga
     1021 cagcgtagag acattttact ccctcaatgt ggattacatt gtagaagatt ttaacgcctg
     1081 ttgtttaatt gaaaatattg aggttattga agaatgagcc tagaaagcta tatccaacaa
     1141 gcggaagaaa tggagctttt agaaaaactc gattttgttt cagacctgtt agaacttgag
     1201 aaagtcagcg aaattgaagc ctatcgcatt ttaaccgccc acggcgaacc taaaccccaa
     1261 ccggcacaag aaaagctaat aggttgcgta gattttcttg atgactaacc caagccccga
     1321 aaggggcttt ttgcattttt gcaacaaaaa acgaccgctt gcaccctttg aaattattgc
     1381 tatcattaat aaaaaacaat aaccaaatca aatgagagta cagcaatgac aaactataaa
     1441 ctaccggcta gaaagtggta caccttagag caggcaacaa aacgcattaa acaactcact
     1501 ggcgaagata tagaaataga agatttatta cattattggt atttaagaaa gctagaatta
     1561 agtatttatt taaatagaaa cggaaatggc gatctgatta taggcaatca ttcttttaat
     1621 aaagaagaat atattgtctt ggaacaacca caaataatca taagagaaga tggctctatt
     1681 gaattagaag gcaaaga
//
LOCUS       DANMBQ010000242         1641 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.247, whole genome shotgun sequence.
ACCESSION   DANMBQ010000242 DANMBQ010000000
VERSION     DANMBQ010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.247"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            357..836
                     /locus_tag="PXE92_002703"
     CDS             357..836
                     /locus_tag="PXE92_002703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HDL5761880.1"
                     /translation="MARVTTELNNTQIKNAKAQTKDYKLMDGKGLFLLVKKNGSKLWR
                     FRYKKPITGKESDLGIGSYPETTLAQARTIREEYRALLAENIDPLEHRQRLEAEALAE
                     IENTFYKVCLKWRDKCESRVKNGELQALTLKKNWRILEKYLLPCRLLYSKHHAKTSY"
     gene            805..1569
                     /locus_tag="PXE92_002704"
     CDS             805..1569
                     /locus_tag="PXE92_002704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5761881.1"
                     /translation="MPNITPKLVINALEPAKEKGIGDTLKRAIRLLNEVMNFAVNADV
                     IEFNKCQNVGSNFSVAKSEHNPTIHPKELPQFLAALRDYNLSFQTKMLIKWQLLTMTR
                     SREASETLWSEIDLEAKTWTISAERMKMKRPHVIPLSRQAVEILERMRKITGNSPFVF
                     QSEMKPRQPMNSQTANRAIGLLGYAGTLTAHGMRSIASTYLNEQLVNYDVVEACLAHV
                     IKDQTRKAYNRSDYLDQRVDVMQQWADYVESCSTGI"
BASE COUNT          550 a          315 c          330 g          446 t
ORIGIN      
        1 ataaacgaaa ataaatagct tttatgtaaa tgatccctaa aatgatccct atttttgtag
       61 agtttatttt atctctttat aaatcaataa gttataagcg agttcagagg aggctgggac
      121 caacttaaat tttccactct tatttcttca ttcgcattct tacgcaaaac cattgatgat
      181 actggcttta gagcaatttt aaattatttc ttcattcgta ttctttcgtg ttcttgcgtt
      241 tacatcccct tattttaagg gtatatttga gggtataacg taaaagggta tgaaacccat
      301 acccttaaat cccttatgat tctgataaag cacaatgcga ttttaggtaa atttttatgg
      361 ctagagttac cacagaatta aataacactc aaatcaaaaa cgcaaaggct caaaccaaag
      421 actacaagct aatggacggc aaggggctgt ttttgctggt taagaaaaac ggctcgaagt
      481 tatggcggtt taggtataaa aagccgatta ccggcaaaga gagcgattta ggcataggca
      541 gttaccccga aactacccta gcccaagcaa gaacgattag agaagaatat agggcattac
      601 tagcggaaaa tatcgaccca ctcgaacacc gccaaagatt agaggctgaa gcgttagccg
      661 aaatagaaaa caccttttat aaagtctgct tgaaatggcg tgataaatgc gaaagccgtg
      721 taaaaaatgg cgaacttcaa gccttaacgc tgaagaagaa ttggcgaatc cttgaaaagt
      781 atcttttgcc ttgccgacta ctctattcca aacatcacgc caaaactagt tattaatgct
      841 ttagagcctg ctaaagaaaa aggcataggc gacaccctta aacgagcaat taggctactt
      901 aatgaagtga tgaattttgc ggtaaatgcg gacgttatcg agtttaacaa atgccaaaat
      961 gtaggctcaa attttagcgt agcgaaatct gaacataacc caacgataca cccaaaagag
     1021 ctacctcaat ttttagctgc attgcgtgat tacaacctat catttcaaac taagatgttg
     1081 attaaatggc aactattaac aatgacacgc tcacgagagg caagcgaaac gttgtggagt
     1141 gaaattgatt tagaggcgaa aacgtggacc atttcagccg aaagaatgaa gatgaaacgc
     1201 cctcacgtta tccctctttc acggcaagcg gtcgaaattt tagaaagaat gcgaaaaatc
     1261 acagggaata gcccatttgt ttttcaaagc gaaatgaaac cacgccaacc gatgaacagc
     1321 caaaccgcca acagagccat aggcttatta ggctatgccg gcactctaac ggctcacggt
     1381 atgcggtcta ttgcctcaac ctatttgaat gagcagttag tcaattatga tgtagtagag
     1441 gcttgtttag ctcacgttat caaagaccaa acccgaaagg cttataaccg ttctgattat
     1501 ttagatcagc gtgtagatgt aatgcagcaa tgggcggatt atgtagaaag ctgctcaacg
     1561 gggatttagt aaatttttgg cggaatttga ccgcttgttt aattagaggt gtacaaatat
     1621 gaataacctt tctgagttta a
//
LOCUS       DANMBQ010000243         1606 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.249, whole genome shotgun sequence.
ACCESSION   DANMBQ010000243 DANMBQ010000000
VERSION     DANMBQ010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.249"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            96..419
                     /locus_tag="PXE92_002705"
     CDS             96..419
                     /locus_tag="PXE92_002705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5761882.1"
                     /translation="MKLSSELQNQINQLNQLRKQALKQEQDEQKLFEKNKIEDLPHFG
                     TQLNAQRKLLGIELTTLEMQTGISSSTLKRLFKDPSQVKFQTICIVAETLGFNLCAIN
                     THKQE"
     gene            complement(496..1514)
                     /gene="glpX"
                     /locus_tag="PXE92_002706"
                     /pseudo
     CDS             complement(496..1514)
                     /gene="glpX"
                     /locus_tag="PXE92_002706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484632.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
BASE COUNT          513 a          371 c          277 g          445 t
ORIGIN      
        1 aaacagatta agattaaata taacctttac atatctaaac aggttatatt taacctatga
       61 acacataaat aatctacttt tagctcaaaa ataaaatgaa actatcaagc gaactacaaa
      121 atcagataaa ccaactaaat cagttacgaa aacaggcact caaacaagag caagacgagc
      181 agaaattgtt tgaaaaaaat aaaattgaag atttgccaca ttttggcacg cagcttaatg
      241 ctcagaggaa actattaggc atagaattaa ccacccttga aatgcaaacc ggcatttcaa
      301 gctctaccct aaaacgctta tttaaagacc caagccaagt gaaatttcag acaatttgta
      361 ttgtggcaga aacactcggc tttaatttat gtgcaattaa tactcacaaa caagagtaag
      421 cgtgacaatg tagtgatttt gattactttg ggaagacaaa aaatcgggct aaaagcccga
      481 tttatcagag aaaagctata aatccaataa agaaaggagt tcgttatctt tacgatcgac
      541 ataatggtcg gattgaattt tacgaatggt tctagatttg ccacgaataa gtaaggtttc
      601 agtgctggca atattgcctc tacgtttaat cccttttaac aattcacctg aagtaatgcc
      661 ggttgcaaca aagacgatat tgtcatcacg caccaaatct tctaatttca acaccgtatt
      721 caccggtaca ttcatttcat tacagcgtaa aagctctttt tcggtagcag ttaaattttc
      781 cgggctattc cccttcactt ggttgcgagg aattaaacgt gcttgcatat cgccacccaa
      841 tgcacgaacc gcagcccccg ccactacccc ttcaggtgct ccgccgatac cataaagcag
      901 atccaattcg ctctctggca aacagcattg caccgcagcc gcaacatcgc catcaggaat
      961 cgcaatcact cttaccccta atttttgcac atcggcaatt attttttcgt ggcgaggctt
     1021 agcaagatag caatggttaa ttgggaaagt aatttgccct ttttcgaggc gacacggcga
     1081 agattttgtt caagcggaag atttaaatca atcattcctt tgcattcctg ccccaccact
     1141 aatttttcca tatacatatc aggggctttt aaaaaggttt ctttgccgcc tgctgctaat
     1201 accgacaacg catttgcctg ccccattgca gtcatacgag taccgtcaat cgggtcaacc
     1261 gcaatactga tttcctcatc ttctaggcgg gatagaccga ttttctcgcc aatataaagc
     1321 atcggtgctt cgtcaatttc gccctcacca attaccactt cgccacggat ttccatttgg
     1381 ttcagcataa accgcattgc tttcaccgca gcttcatcag cggcattttt atccccacgg
     1441 cctagccaag agtaagctgc tagagccgct gcttccgtaa cacgagaaaa ttcaaaagaa
     1501 agagttcgtt tcatttttgt tccttagttt cttgaaagaa aaactttaaa agaagagaga
     1561 ttatatttta tcagtaacct gcaagctacg ttactaaaaa atcagc
//
LOCUS       DANMBQ010000244         1587 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.250, whole genome shotgun sequence.
ACCESSION   DANMBQ010000244 DANMBQ010000000
VERSION     DANMBQ010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.250"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            322..576
                     /locus_tag="PXE92_002707"
     CDS             322..576
                     /locus_tag="PXE92_002707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761883.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFCNYQQFMPEVEAKESLR
                     KQEPELDDRYNEEEYSEEEYPDENDASDENDNYDETYNVF"
     gene            776..952
                     /locus_tag="PXE92_002708"
     CDS             776..952
                     /locus_tag="PXE92_002708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761884.1"
                     /translation="MATSSFDKRFVVKDPKAVKVLIEALQSPIKVVLPKKDLEKEEKE
                     ALCAIKKRLASMGL"
     gene            913..1464
                     /locus_tag="PXE92_002709"
     CDS             913..1464
                     /locus_tag="PXE92_002709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761885.1"
                     /translation="MCNQKTLSLYGLVKELGIEKTQLFLEQAFSCSRNKDVESFLLNK
                     AIRFETALAAATHLIINEQGDILAYFTLSFKEIEVEVSKSQLKKLTAGLSNDSHLRVL
                     LIGQIGKNEKVIDNPAKLPDILNHIYAQLYKAQRVLGGRVVILECENTPKLLELYKQN
                     KFQILNTIGSENGLKTLFFIPDF"
BASE COUNT          586 a          273 c          266 g          462 t
ORIGIN      
        1 ccgctactca acatacaggg atggttatct tgataacgct cacgatactc ttgagcaata
       61 gctagtaatt gctgattagt catataaagt ctccaataac ataataaacc tgaaaacgtt
      121 cttagtattc tggcaacatt tttataaata gaaaccaaaa actatattca aatcattttt
      181 agtttctgct caacattcct atgtttttcc atacactgaa gtaaatttac ctaaccctat
      241 tttgctgtga aaccaaaact cctcacgctt atccttagta gcatttcgat gtcgctcact
      301 tatgccaccc ctcaattagg gatgatatgc cacgctgatc ctgaatatgt aaaatacaac
      361 tacgccggac tttgggaaaa aggcagcgat ggcacttttt tctgcaatta ccagcaattt
      421 atgcctgaag ttgaagctaa agaatcacta aggaaacaag aaccagaact tgatgataga
      481 tataacgaag aggaatatag cgaagaagaa tatcctgatg aaaatgatgc cagcgatgaa
      541 aacgataact acgatgaaac ttataatgtt ttctagtatg tatatggaaa ccggaggaat
      601 ccgtgattga aaaggcttgc atttccaaat atagtctata tattgtggta attgaaagta
      661 tttctatgct aacaagcata aggctatgta atcgaaaacc acccacaagg cctaaataca
      721 gtattattac agccatgagt aaccatggta atttaaatat ttaaggagtt ctataatggc
      781 aacatcatca tttgataaac gctttgtagt caaagatcca aaagctgtca aggtattaat
      841 tgaggcatta caaagcccaa tcaaagtagt tttacctaaa aaagacttag aaaaagaaga
      901 gaaagaagca ctatgtgcaa tcaaaaaacg cttagcctct atgggcttgt aaaagaacta
      961 ggtattgaaa aaacacaact ctttttggag caagcatttt cttgcagtag aaataaagat
     1021 gttgaaagtt ttctacttaa taaagcaatc agatttgaaa ccgcattagc agcagcaaca
     1081 catttaatca ttaatgaaca gggcgatatt ttggcttact ttaccctctc ttttaaagaa
     1141 attgaggtgg aagtaagcaa aagccaatta aaaaagctaa ctgctggttt aagtaatgat
     1201 tcacatttaa gagtattgct tatcggtcaa atcggcaaaa atgaaaaagt aattgacaat
     1261 ccagccaaat tgccagatat tctaaatcat atctatgcac aactttataa agcacaacga
     1321 gttttaggtg ggcgagtcgt tatattagaa tgtgaaaata cgcctaaatt attagaacta
     1381 tataaacaaa ataaatttca aattctcaat accattggaa gtgagaatgg tctaaaaaca
     1441 cttttcttta ttcctgattt ttaactacag ctaatatttc attagaagaa agtcgccagc
     1501 tttgtcagga agtcatatat gggagaaaga acaatgtctc tacttaaaaa agcacaaacg
     1561 tttatttcta tttttaatga cgtgcga
//
LOCUS       DANMBQ010000245         1569 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.251, whole genome shotgun sequence.
ACCESSION   DANMBQ010000245 DANMBQ010000000
VERSION     DANMBQ010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.251"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            58..495
                     /locus_tag="PXE92_002710"
     CDS             58..495
                     /locus_tag="PXE92_002710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HDL5761886.1"
                     /translation="MLSLFDAGQRYLNTLPNQKKLANFMPDYHIIRLVKFSSKVMPAF
                     ACFALVWQYCFTDPTQSILANSVLTAVFAISIPFQGLYWLGKRARSPLSLSLLEWYES
                     LRQKLISAQVKLEETQAVPSFQDFANLLKLAEETWGDEYFDEL"
     gene            complement(780..1508)
                     /locus_tag="PXE92_002711"
     CDS             complement(780..1508)
                     /locus_tag="PXE92_002711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5761887.1"
                     /translation="MKSFDKVWFSAKELEELDLPDLPKQATNITRKALKELWIKRDAV
                     GVKGGGNEYHITSLPRKAQEALGFKSGINAIKDSIVREITPEEQNKGSELSGTVLNNI
                     ISMIDSFASIKVSAGFGSFNEGVTKPDGQEPYADSLLHTLGVNAKKCAVFWASGDSMY
                     PTIDNGDQLLVDLSRNEIRGDNNIYIVQNGDSVWVKRVKLLWDGVELISDNREEYELI
                     KITADQAQNLQIIGQVVHIGHSLV"
BASE COUNT          467 a          296 c          273 g          533 t
ORIGIN      
        1 attgtagatt ttaatcagtt agctaaaata aaagaaaaat ttgaaagaga taatcctatg
       61 ttaagcttat ttgatgcagg acagcgttac ctcaacactc tgccgaatca gaaaaaatta
      121 gccaatttta tgccagatta ccacattatt cgcttggtaa aattttcctc taaagtaatg
      181 cctgcttttg cttgctttgc attagtttgg caatattgct ttaccgatcc gacccaatct
      241 attttagcca attcggtact tactgctgtt ttcgccattt ctattccgtt tcaagggtta
      301 tattggcttg gaaaacgggc aagatcaccg ttatctttat cattattgga atggtatgag
      361 tcgcttagac aaaaattaat ttcggcacaa gtcaaattag aagaaacaca agcggtacct
      421 tctttccaag attttgcaaa tttactcaag ctagcagaag agacttgggg agatgaatat
      481 tttgatgagt tataaaataa aaaaagcccc acttaaaata agtggggtaa aacttttgtt
      541 ctaattctgg aggtttgaat tactgtttta ttgtggggta ctgatctttt ttgcatagag
      601 agaaagaaaa aaatttgggc ggaaaaataa cggcgagccc cgtgaataca agggttcgcc
      661 gttattgttt ggttggagct atgcaaaaaa caaaatgagc aggattagaa aaaaacgagc
      721 agtttttgcg ttattttttg cataggtttg atcggtttta aaactatttt aaatctgttt
      781 taaactaaag aatgcccgat gtgtaccact tgcccgatga tttgtaggtt ttgggcttgg
      841 tctgctgtaa tctttattaa ctcgtactct tctcggttgt ctgaaataag ctctacaccg
      901 tcccatagca gttttacacg cttaacccaa acactgtcgc cgttttgtac aatgtaaata
      961 ttattgtcgc ctcgtatctc attacgactt aaatcaacta gtagctggtc gccattatca
     1021 atagtcggat acatcgagtc tccacttgcc caaaaaacag cacacttctt ggcattaaca
     1081 ccaagcgtat gcaacaagct atcagcataa ggctcttgtc catcaggttt tgttacacct
     1141 tcattaaagc tcccaaagcc tgcagatact ttaatagatg caaaactatc aatcattgag
     1201 attatgttat tcaaaacggt gcctgataat tcagatcctt tgttttgctc ttcaggtgta
     1261 atctctctta ctatgctatc cttgattgca tttattccac ttttaaatcc gagtgcttct
     1321 tgggctttac gaggcaatga agttatgtga tattcattcc ccccaccttt tactccaact
     1381 gcatcacgtt ttatccagag ttcttttaat gcctttcttg taatgtttgt tgcttgcttt
     1441 ggaaggtcag gcaaatccaa ttcttctagt tctttggctg aaaaccaaac tttatcaaat
     1501 gatttcataa ttaacccctt cttaatcaaa aatgatttta aaatcaaaat tgattaagtt
     1561 atttaaaat
//
LOCUS       DANMBQ010000246         1516 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.252, whole genome shotgun sequence.
ACCESSION   DANMBQ010000246 DANMBQ010000000
VERSION     DANMBQ010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.252"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..1047)
                     /locus_tag="PXE92_002712"
     CDS             complement(<1..1047)
                     /locus_tag="PXE92_002712"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HDL5761888.1"
                     /translation="MAQQITLFEDVPLPLTLGGELSPITVAYQTYGRLNAEKSNAVLL
                     CHALTGDAKPYYDSPTEKGWWQDFIGKGLAFDTDKYFFICSNVLGGCKGTTGPASINP
                     KTNKPYGSLFPIITVQDIVNVQKALLDYLEIPQLHAVVGGSFGGMQATQWGISYPDKV
                     RNIINLCSSLTLSAEAIGFNHVMRQAIINDPHFNGGNYYDGIAPDNGLKIARMLGMLT
                     YRTDIQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLY
                     DPALGYENEETALKRIKANYTFVAVTSDQLFKQVDVYKSKQKLEQAGVNLEFHEFHSD
                     FGHDAFLVDYDFFEP"
BASE COUNT          453 a          281 c          310 g          472 t
ORIGIN      
        1 cggttcaaaa aagtcataat caaccaaaaa ggcatcgtgt ccgaaatcgg agtgaaactc
       61 gtggaactcc aaatttacgc ctgcctgttc taatttttgt ttgctcttat acacgtcaac
      121 ttgcttgaat agttggtcgc ttgttaccgc tacaaaagtg tagttggctt taatacgttt
      181 tagggcggtt tcttcatttt catagccaag agccgggtcg tataaatcta atgctcggag
      241 taaacggagg taagtgttgg catcgaaacg acctaaaaat ttcgtgcctt gatagcttaa
      301 ataggattcc acttggaaat ggtcgcccca aatttgtcct tgctgtttgg tttctcgtcc
      361 aaaggcttta gcaagttgaa tatcagtacg gtaagtcagc ataccgagca tacgggcgat
      421 ttttaagccg ttatcaggtg caatgccatc ataatagttc ccaccgttaa agtgtggatc
      481 gttaataata gcttggcgca taacgtggtt aaaaccgata gcctcggcac ttagggtaag
      541 tgacgaacaa agatttataa tgttgcgaac tttatcaggg taactaatac cccactgtgt
      601 tgcttgcatt ccgccgaaag atccccctac cactgcgtga agttgaggga tttctaaata
      661 gtccaataat gctttttgta cattaacaat atcttgcact gtaataattg gaaacaaact
      721 accgtaaggt ttattggttt tagggttaat cgaagctggg ccggttgtgc ctttacaacc
      781 gcctaataca ttactgcaaa taaagaaata tttatcggta tcaaacgcaa gccctttgcc
      841 gatgaaatct tgccaccagc ctttctcggt tggtgagtca tagtaaggct tagcatcacc
      901 ggtaagggcg tggcaaagca agaccgcatt gcttttctct gcatttaatc tgccgtaagt
      961 ctggtaagcc actgtgatag gggacagttc gcctcctaat gtgagtggta aaggtacgtc
     1021 ctcaaaaagg gtaatctgct gagccataaa aatcctgttt gcaaaaaatt ctgctttttt
     1081 gaccgcttgt tgtaatgacc gttaaattag cggtgttcat ttcaattgtc aagaattttt
     1141 agacgtctaa acgtctagat ttttaaacgg ctaaaatcaa aattttattg ctgagaagat
     1201 atttattact taacaaataa catgaaatag aataaattta ttgaacgatt agactatttt
     1261 gtttgtctct aatttaccca tcttaaatag ggtagcaaaa gtaaaggatc tcatttgaac
     1321 caaacgcgtg ataggttaga aaaattgcca cttttccata aaatgcagca gtttattatt
     1381 aaggcattga aaataattgc aattttcccc ttattgggaa tagctatatt attagtggtt
     1441 gattcactta caagttatat tgtgagggat aaaatttata cagatagtaa acagattcct
     1501 taccgggagt atgcag
//
LOCUS       DANMBQ010000247         1342 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.253, whole genome shotgun sequence.
ACCESSION   DANMBQ010000247 DANMBQ010000000
VERSION     DANMBQ010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1342
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.253"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..703)
                     /locus_tag="PXE92_002713"
     CDS             complement(<1..703)
                     /locus_tag="PXE92_002713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5761889.1"
                     /translation="MELEQQIIDYALQHEPHEMCGFVVFDGNKNRFIPCENQAEDKAN
                     YFEISDLDYIKAEEKGELVAVVHSHPEPNGKPILSVLDRKMQVQTGLDWWLVHNRQIH
                     KFRNVPHLIGREFKHGTMDCYTLYRDAYMLAGYEMDEFDRQDDWWHTGQNLYLDNIQG
                     QGFERVGTPQIGDVILMQVGADVPNHAAIYIGEQMVIHHSPNRLSKRDLYDGYWLRHT
                     HSIWRHKLADKLDFDG"
     gene            complement(707..>1342)
                     /locus_tag="PXE92_002714"
     CDS             complement(707..>1342)
                     /locus_tag="PXE92_002714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5761890.1"
                     /translation="DLRTLKDKSGNAGSVYRFYSGLNELKTSIVWQGRTYDPYPIEAS
                     GFERNSSGPSNRPTLTLSNLFGLVTGIANQFDECIGAIVRRHQVYAQYLDAVNFAGGN
                     AKADPNQEIISHFVIEQLTSLTRETATFTLALPIETDNAKIPSRIIMADTCTWIYRSA
                     ECGYTGKQYFDEKDKATSDPKADKCSHCLNGCELRGNQRNFGGFVSVNKLG"
BASE COUNT          343 a          323 c          280 g          396 t
ORIGIN      
        1 tgccgtcaaa atctaactta tccgccagtt tatgccgcca aatgctgtgg gtatgacgta
       61 accaatagcc gtcgtataaa tcacgcttag ataatcggtt cgggctatga tggattacca
      121 tctgttcgcc aatgtaaatg gcagcgtggt tcggcacatc agcacctact tgcattaaaa
      181 tcacatcgcc gatttgtggg gttcccactc gctcaaaacc ttgcccttgg atattatcca
      241 aataaagatt ttgcccggta tgccaccagt catcttgtcg atcgaattcg tccatctcgt
      301 aaccggcaag catataggca tcacggtaga gcgtgtaaca atccattgtg ccgtgtttaa
      361 actcacgccc gattaaatgt ggtacattgc ggaatttatg gatttgccga ttatgcacta
      421 gccaccaatc taaaccggtc tgtacctgca ttttgcgatc aagcacagat aatataggct
      481 tgccgtttgg ctcgggatgt gaatgtacca ccgctaccag ttcgcctttt tcttctgctt
      541 tgatgtaatc aagatcggat atttcaaagt aattggcttt gtcttccgct tggttttcgc
      601 aagggataaa tcgattttta ttgccgtcaa aaacaacaaa gccgcacatt tcgtgcggtt
      661 cgtgttggag ggcgtagtcg attatttgtt gttccaattc cattcattac cccaatttat
      721 tcaccgatac aaatccacca aaattacgct gattgcctcg caattcacaa ccgttcaggc
      781 aatggctgca tttatcggct tttgggtctg atgttgcctt gtctttttca tcaaaatatt
      841 gcttaccggt ataaccacat tccgccgagc ggtaaatcca agtgcaggtg tccgccataa
      901 taattctgct ggggattttg gcattatcag tttcaatcgg taatgccagc gtaaaggtcg
      961 ccgtttctcg ggtgaggctg gtaagctgct caatcacaaa atgactgatt atttcctgat
     1021 ttggatcagc tttcgcatta cccccggcaa aattcacggc atctaaatat tgggcgtaaa
     1081 cctgatgacg gcgaacaatc gccccgatac actcatcaaa ctgattagca atacccgtaa
     1141 ctaagccaaa cagatttgat agcgtaagag tagggcgatt gcttgggccg ctactgtttc
     1201 gttcaaatcc acttgcctca atcgggtacg gatcgtaagt ccgcccttgc cagacaatac
     1261 ttgttttgag ttcatttaac cccgaataaa agcggtaaac tgagccagca ttaccgcttt
     1321 tatcctttaa tgtgcgtaaa tc
//
LOCUS       DANMBQ010000248         1337 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.254, whole genome shotgun sequence.
ACCESSION   DANMBQ010000248 DANMBQ010000000
VERSION     DANMBQ010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1337
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.254"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            68..1255
                     /locus_tag="PXE92_002715"
     CDS             68..1255
                     /locus_tag="PXE92_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761891.1"
                     /translation="MSALINLFYLYDPWFFHFLRMSFVVGLVACGYLVFQIIKGKSNG
                     IIIPKDSLIAIIALIGFSIIPLLINSTKEIGVLAMYVKMLILFVFGIAIYNVFYHNQQ
                     GKTLFVRDLKIGIAIQWICGVTALLGLPFMVDFLLSSNAMMPRFFGSEQEYRLYNITS
                     SAFFQLSIFYLMLLHFLLAYNKKTDVVNEWFLFLLLCVGLISGRTFLLMSVISIALYF
                     KWKYILPLIAFTALILFLAIVFPENRYVEHALEPVINLLSGTGKVSSSTDNLVKNHLF
                     LPTLNQFISGDGLYYTETGGYYGGSDSGYIRQVLYGGVSYMLACFAFTYYFVRKVAVN
                     WFEGSWIFTLSTIGILAILNIKADTFAFPGLMMLFLMFLSLFGTSGRNVTFFCKNKEA
                     EYV"
     gene            1248..>1337
                     /locus_tag="PXE92_002716"
     CDS             1248..>1337
                     /locus_tag="PXE92_002716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5761892.1"
                     /translation="MFSIIVPSYNRNQEINALLESLKQQTAYNF"
BASE COUNT          367 a          206 c          250 g          514 t
ORIGIN      
        1 tatccactta aaaaattact ggcaattaaa cgtaatttta ctcagcgaaa ttcataatag
       61 gtctgaaatg tcagcactca ttaacttatt ttatctttac gatccgtggt ttttccattt
      121 tttaagaatg tcgtttgtag tcgggcttgt tgcttgtggc tatttggttt tccaaataat
      181 caagggcaaa tcgaatggca ttattattcc taaagatagc ctgattgcaa ttattgcatt
      241 aatcggcttt agcattattc cattattgat taacagtaca aaagaaattg gtgtgctggc
      301 aatgtatgtc aaaatgctga ttttgtttgt gttcgggatt gcgatttata atgtttttta
      361 tcataaccaa caaggtaaaa ctttattcgt tcgtgattta aaaatcggca ttgctattca
      421 atggatttgt ggtgtgacag ccttattagg tttgccgttt atggtggatt ttttattatc
      481 cagcaatgca atgatgccac gtttttttgg ttcggaacaa gaataccgtt tatataacat
      541 cacttcttcc gcctttttcc aattaagcat tttttattta atgctattac attttttatt
      601 ggcatataat aaaaaaacag atgtggtgaa tgagtggttt ttatttttat tattatgtgt
      661 tggtttaatt tccggtagaa cctttttatt aatgtcagta ataagtattg cactctattt
      721 taaatggaaa tatatattgc cactgattgc cttcactgcg ttaattctat ttttggcgat
      781 tgtttttccg gaaaaccgtt atgttgaaca cgccttagaa ccggtaatta atttattgtc
      841 cggcaccgga aaagtcagct cttcaaccga taatttagtg aaaaaccatc tgtttttacc
      901 gactttaaat cagtttattt ccggtgatgg tttatattac accgaaactg gtggctatta
      961 tggtggatcg gattccggct atattcgcca agtattatat ggtggagtaa gttatatgtt
     1021 ggcgtgtttt gccttcactt actattttgt acgcaaagtg gcggtgaatt ggtttgaagg
     1081 cagttggatt tttaccttat ccaccatcgg cattttagct attttaaata ttaaagcaga
     1141 tacctttgct ttcccggggc tgatgatgct gtttctaatg ttcttgtcgc tgtttggaac
     1201 aagcggtcga aatgtaacat ttttttgcaa aaacaaagag gctgaatatg tttagtatta
     1261 ttgtgccttc ttataaccgt aatcaagaaa tcaatgcgtt gcttgagagt ttaaagcaac
     1321 aaactgcata taatttt
//
LOCUS       DANMBQ010000249         1322 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.255, whole genome shotgun sequence.
ACCESSION   DANMBQ010000249 DANMBQ010000000
VERSION     DANMBQ010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1322
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.255"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            90..1061
                     /locus_tag="PXE92_002717"
     CDS             90..1061
                     /locus_tag="PXE92_002717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002337518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS30-like element ISApl1 family transposase"
                     /protein_id="HDL5761893.1"
                     /translation="MSTSYRHLTINEREKIMILLAQGKKQAEIAKALGRSSSTISREL
                     KRHALESYSATNAQNSYLKHRQNSKAQRKLEQPEYFNLVQEKFLTENWSPEQISARLK
                     LEKSELSISYSTIYRGIYSGLFDIGERKASRKLRHKGKTRHTKNHHEKRGKIQISNHL
                     NDRPISAQNRSRFGHWKADTVLGKAGGACLLTLTERKSRFELVKKIPAKKAEAVQKAM
                     IELLDSHILRSITPDRGKEFAQHRLVTEALGVEFYFPEPHQPWTRGTNENTNGLLREY
                     FPKHQDINQWSEVDIQQVVNKLNLRPRKCLGWKTPYEVYFKKTLHLV"
     gene            complement(1176..>1322)
                     /locus_tag="PXE92_002718"
     CDS             complement(1176..>1322)
                     /locus_tag="PXE92_002718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S ribosomal RNA methyltransferase Erm"
                     /protein_id="HDL5761894.1"
                     /translation="WLKMFKLYNSNMVSKDKKVLVNNSYKRMLEHESSLEKIHRNRKQ
                     NNRK"
BASE COUNT          443 a          269 c          244 g          366 t
ORIGIN      
        1 gctgaattta caatccaagt gcaacaaaaa aagaagtact catcaactag aatataattt
       61 tgtttccaca caaaaaccac ttccaaatga tgagtacttc ctaccgacat cttacaataa
      121 acgagcgaga aaagataatg attttactcg cacagggcaa aaaacaagca gaaattgcca
      181 aagcactggg acgtagctcc agcaccattt ctcgcgagct gaaacgacac gctctagaaa
      241 gctacagtgc aacgaacgca caaaacagct atttgaagca tcgtcaaaat agcaaagcac
      301 agcgcaaatt agagcagcct gaatatttca atttggtgca agaaaagttt ctgacagaaa
      361 actggtcgcc cgaacaaatc agcgcacgat taaaattgga aaaatctgaa ttatccatta
      421 gttattcaac catttatcgt ggtatttatt cagggttgtt tgatataggc gaacgcaaag
      481 ccagtcgcaa actgcgccac aaaggcaaaa cacggcatac aaaaaatcat catgaaaaac
      541 gtggcaaaat tcagatatcc aaccatttga acgaccgtcc catttcggcg caaaatcgca
      601 gtcgctttgg acattggaaa gccgataccg tactgggtaa agcgggtgga gcttgtttgc
      661 tgacgctgac ggaacgcaaa agtcgttttg agttggtgaa gaaaattcct gccaaaaaag
      721 ccgaagcagt ccaaaaagcc atgattgaat tgctggattc acatatattg cggtcaatta
      781 cgccagaccg tggtaaagaa tttgcccaac atcgtttggt aacagaagca ctgggtgtag
      841 aattttactt ccccgagccg catcaaccgt ggacacgggg aacgaatgaa aatacaaatg
      901 ggttacttcg tgaatacttt ccgaagcacc aagacatcaa tcagtggagc gaagttgata
      961 ttcaacaggt ggtcaataaa ctgaatttac gaccgcgtaa atgtttgggt tggaaaacac
     1021 cttatgaagt ttacttcaaa aaaacgttgc acttggtttg acaattcaag cttccaaatt
     1081 aaaattttta acaacaaagt ttttcccatc gaaagttttg tttatgtttt ctagctttaa
     1141 ttttaacatt tagcttttcc ttatctgccg tttatctatt ttctgttatt ttgctttcta
     1201 tttctatgaa tcttttctaa actagactca tgttctaaca ttcttttata cgaattgtta
     1261 actaaaactt ttttatcctt gcttaccatg ttcgaattat agagtttaaa catttttagc
     1321 ca
//
LOCUS       DANMBQ010000250         1289 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.256, whole genome shotgun sequence.
ACCESSION   DANMBQ010000250 DANMBQ010000000
VERSION     DANMBQ010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1289
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.256"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..439
                     /locus_tag="PXE92_002719"
     CDS             <1..439
                     /locus_tag="PXE92_002719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5761895.1"
                     /translation="QYYKYRLEAAKQLVQEGKVNQLLLSGDNKTPYYNEPKTMTSDLL
                     KMGIATSKIKQDYAGYTTFYSIIRAKKVYKLPPFTIISQKFHCERALFIAKFRDIDAI
                     CYAATYPEGAYQVRMREILARSAMVFSLLIGKEPESLEDIRSK"
     gene            complement(476..>1289)
                     /gene="purU"
                     /locus_tag="PXE92_002720"
     CDS             complement(476..>1289)
                     /gene="purU"
                     /locus_tag="PXE92_002720"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005641775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HDL5761896.1"
                     /translation="TECPDDTGLVAKITNICYKHQLNIIKNSEFVENETKRFFMRTEL
                     NGIFNDETLLTDLKFTLPEGSSYKLLPKQRKRIVILVTKEAHCLGDLLMKNYYGGLDV
                     EIAAVIGNHETLKSLVERFDIPFHLVSHENLTRVEHDKLLAEKIDEYSPDYIVLAKYM
                     RVLNPEFVARYPNRVVNIHHSFLPAFIGAKPYHRAYERGVKIIGATAHFVNDELDEGP
                     IIMQNVINVDHTYTAEAMMRAGRDVEKTVLSQALELVLADKVFVYKNKTIIL"
BASE COUNT          410 a          221 c          244 g          414 t
ORIGIN      
        1 ccaatattat aaatatcgtt tggaagccgc taagcaatta gtccaagaag gaaaggtcaa
       61 tcagcttttg ttaagtggag ataataaaac gccgtactat aatgagccaa aaacaatgac
      121 aagtgatcta cttaaaatgg ggattgcgac ttcaaaaatt aagcaggatt atgcggggta
      181 taccactttt tattcaataa ttagggctaa aaaagtatat aaattaccgc catttacgat
      241 tatctcccaa aaattccact gtgaaagggc attgtttatt gcaaaattta gggatattga
      301 tgcaatttgt tatgccgcta catatccaga gggggcttat caggtacgaa tgcgggaaat
      361 tttagccaga tcggcaatgg tttttagttt gttgataggt aaagagcctg aatcattgga
      421 agatatccgt tctaaatgag atagccggtc agataatgtt gaccggctat tttgcttata
      481 aaataatggt tttgttttta tatacaaata ctttgtcagc aagcactaat tctaaggctt
      541 ggctaagtac ggttttctcg acatcacgtc cggcacgcat catagcctct gcggtgtagg
      601 tgtgatcaac attaatcaca ttttgcataa taatcgggcc ttcatctaat tcatcattca
      661 caaaatgggc ggttgcaccg ataattttca ctccacgttc gtatgcacga tgataaggtt
      721 ttgcaccaat gaaagcgggt aagaacgagt ggtgaatatt gacaactcgg tttggataac
      781 gagcgacaaa ttccggattc agcacccgca tatatttagc caacacaata taatcaggtg
      841 aatattcatc aattttttcc gctaataatt tatcgtgttc cactcgggtt aaattttcgt
      901 ggctgactaa atggaatgga atatcgaaac gttcaactaa actttttaat gtttcgtggt
      961 ttccaatcac ggcagcaatt tctacatcta atccaccata gtaatttttc atcagtaagt
     1021 cacctaaaca atgtgcttct ttggtaacta aaataacgat acgttttctt tgtttaggga
     1081 gtaatttata gcttgagcct tcaggtaagg taaattttaa atcagtgagt aaggtttcat
     1141 cattaaaaat tccgtttaat tcggtacgca taaaaaaacg tttagtttca ttctcaacaa
     1201 attcagaatt tttaataata tttaattggt gcttatagca aatattggta attttagcga
     1261 caagtcctgt atcatcagga cattcagtt
//
LOCUS       DANMBQ010000251         1285 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.257, whole genome shotgun sequence.
ACCESSION   DANMBQ010000251 DANMBQ010000000
VERSION     DANMBQ010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1285
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.257"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            24..1214
                     /locus_tag="PXE92_002721"
     CDS             24..1214
                     /locus_tag="PXE92_002721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HDL5761897.1"
                     /translation="MCPGPTDADPRVLRAMSAPILGQFDPEFTSLMNETMEMERRLFQ
                     TKNEQTYVVNSTSRGGLETVLTAAICPGDKVLIPAFGRFGYLLNEILARSGADITIIE
                     REWGTVFEPEEIEAELKKGGYKAVAIIHGETSTSMMQPLEEIGKICKQYDAMLIVDTV
                     ATLGGVDIRVDEWGIDACIGGTQKCISAPSGTALITYNKRIEEIIAKRKRVEKGIRAE
                     SDVDGTLPPIPSNYLDLAQLQDYWSPRRLNHHTETTSAQYGVHEALRIILQEGLEARF
                     ARHILNDKALCAGLEAMGLKIFGDRKHKAPVVTAFHIPEGMSGPALRSDILNHFGIEL
                     ATSFGPLDGKVIRIGNMGFSSQKRNVLLTLGALEAVLLSHKVKVPSGDAVAAALAVYK
                     EADK"
BASE COUNT          396 a          268 c          267 g          354 t
ORIGIN      
        1 ttaatccctc ccctcgttta ttaatgtgcc ctggcccaac agatgctgac ccacgtgttt
       61 tgcgtgcaat gtctgcaccc attttagggc aatttgaccc tgagtttacc tcattaatga
      121 atgaaacaat ggaaatggaa cgccgtttat tccaaaccaa aaatgagcaa acttatgtag
      181 tcaactccac ctctcgtggt ggcttagaaa ctgttctaac cgcagcgatt tgcccaggcg
      241 ataaagtgtt aattcctgca tttggtcgtt ttggttattt attaaatgaa attttagctc
      301 gtagcggtgc agatattacc attatcgaaa gagagtgggg aaccgtattt gaaccagaag
      361 aaattgaagc agagttgaaa aaaggcggct ataaagcagt tgctattatt cacggcgaaa
      421 cctcaacctc tatgatgcaa ccgttagaag agatcggcaa aatctgtaaa caatatgatg
      481 caatgttaat tgtagatacc gttgcaacct taggcggtgt agatattcgt gtggatgaat
      541 ggggcattga tgcttgtatc ggcggtacac aaaaatgtat ttccgcccca tcaggcacag
      601 ctttaatcac ttataacaaa cggattgaag agattattgc aaaacgtaaa cgtgtggaaa
      661 aaggcattcg tgcagagtct gatgtagatg gcacattacc gccaattcca agtaactact
      721 tagacttggc acagctacaa gattactgga gcccacgccg tttaaatcac cacacagaaa
      781 ccacttctgc acaatatggt gtacacgaag cgttacgcat tattttacaa gaaggcttag
      841 aagctcgttt tgctcgccat attttaaacg acaaagcatt atgtgcaggt ttagaagcaa
      901 tgggtttgaa aatttttggc gatcgcaaac ataaagcccc cgttgtaacg gcattccaca
      961 ttccagaagg tatgagtggc ccagcattgc gtagtgatat tttaaaccac ttcggtattg
     1021 aattagccac ctcattcggc cccttagatg gaaaagtaat ccgtatcggt aatatgggtt
     1081 tctcaagcca aaaacgtaac gtacttttaa ccttaggtgc gttagaagcc gtacttttaa
     1141 gccataaagt aaaagtgcct tcaggcgatg cggttgcagc tgccttggca gtctataaag
     1201 aggctgataa ataaccacct tcctaaattt acaatacaac tcactaataa ttaatactgt
     1261 ggatatttat ccacagtaaa accac
//
LOCUS       DANMBQ010000252         1233 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.258, whole genome shotgun sequence.
ACCESSION   DANMBQ010000252 DANMBQ010000000
VERSION     DANMBQ010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1233)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1233)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1233
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.258"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            116..>1233
                     /gene="malK"
                     /locus_tag="PXE92_002722"
     CDS             116..>1233
                     /gene="malK"
                     /locus_tag="PXE92_002722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005552148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter ATP-binding
                     protein MalK"
                     /protein_id="HDL5761898.1"
                     /translation="MANVSLRNVGKSYGDVHISKDINLEINEGEFVVFVGPSGCGKST
                     LLRMIAGLEDITTGELYIGGKLMNEVEPSKRGIGMVFQSYALYPHLDVAENMSFGLKL
                     AGVSKAERDQRVNQVAEILQLAHLLDRKPKALSGGQRQRVAIGRTLVSQPEVFLLDEP
                     LSNLDAALRVQMRVEISKLHKKLNRTMIYVTHDQVEAMTLADKIVVLNAGGIAQVGKP
                     LELYHYPANRFVAGFIGSPKMNFLPVKVIAVEPERVKIELPDANHHNFWIPVSGEGVN
                     VGDNLSLGIRPEHLVPSDQTQVTLHGIVQVVELLGNETQIHLEIPEIKQPTLIYRQND
                     VVLVNEGDDLNIGILPERCHLFKEDGTACKRLFVEKGV"
BASE COUNT          390 a          225 c          277 g          341 t
ORIGIN      
        1 aaggcgacta ttcagcctaa aaaaaagtat tttaggatga tttcttcttt agataaaaag
       61 gcgactattc agcctaaata aaaccaacaa gcaaaagcag aaaagaggtt tagttatggc
      121 gaatgtatca ttacgtaacg tgggaaaatc gtatggtgat gttcatatct ctaaggatat
      181 taatttagaa attaacgaag gagaattcgt tgttttcgtt ggaccgtcag gttgtggcaa
      241 atctacgcta ttacgaatga tagcaggttt ggaagatatt acgacaggag aactctatat
      301 cggtggaaaa ctgatgaatg aagtagagcc ttcaaaacgt ggtatcggta tggtgttcca
      361 atcctatgct ctctatccac atttagacgt tgccgaaaat atgtcttttg gcttaaagct
      421 ggcaggtgta agtaaagcag agcgggatca acgagttaac caagttgccg aaatcttaca
      481 gcttgcccat ttattagatc gaaaacctaa agcactttcc ggcggacaac gccaacgggt
      541 ggctattggt agaacactgg tttcccaacc ggaagtattt ttactcgatg aaccactttc
      601 caaccttgat gccgcattgc gtgtacaaat gcgggtagaa atttccaaat tacataaaaa
      661 actaaaccgc acaatgattt atgttacgca cgatcaagtt gaagcaatga cattagcgga
      721 caaaatcgtg gtattaaatg ccggcggtat tgctcaagta ggtaaaccgt tagaacttta
      781 tcattacccg gcaaatcgct ttgtagcagg gtttatcggc tcgcctaaaa tgaacttttt
      841 accggtaaaa gtgattgcgg tagagccgga acgggtaaaa attgagttac ctgatgcgaa
      901 tcatcataat ttttggattc cggtttccgg cgaaggggtg aatgtgggag ataacttatc
      961 tttaggtatc cgcccggaac atttagttcc ttcggatcaa acccaagtga ccttacacgg
     1021 tattgtgcaa gttgtggaat tgctcggaaa tgaaacacaa atccaccttg aaatccctga
     1081 aatcaaacaa ccaaccttaa tttatcgtca aaacgatgtg gtattagtta atgaaggcga
     1141 cgatctgaat atcggtatat tgccggaacg ctgccattta tttaaggaag acggtacagc
     1201 ttgcaaacgt ttgtttgttg aaaaaggggt ata
//
LOCUS       DANMBQ010000253         1204 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.259, whole genome shotgun sequence.
ACCESSION   DANMBQ010000253 DANMBQ010000000
VERSION     DANMBQ010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1204
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.259"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..230
                     /locus_tag="PXE92_002723"
     CDS             <1..230
                     /locus_tag="PXE92_002723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HDL5761899.1"
                     /translation="LSDTLLKNLKYSPNAKPIADSNGLFILAQKKAKVWIYSYISPKT
                     GKRSTKNRIGSYPQMSLVEQSPQVFEQIARL"
     gene            282..869
                     /locus_tag="PXE92_002724"
     CDS             282..869
                     /locus_tag="PXE92_002724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SocA family protein"
                     /protein_id="HDL5761900.1"
                     /translation="MFDELKIAQATAYLLHKAGGTMEHIKVMKLLYLADRLSWQRYGY
                     SISNDEYYSLPYGPVLSNTLNLMRGEEASLYQKTSIWGEWIADKEDHKISLKKSVNTE
                     DEYFFDCLSESDTEILEEVFATFGNYKPFALVEYTHNPKYIPEWEDPQGRSKPISLST
                     LLTKLGKTPSEIESILEQQAEKGTMDNLFKGLGNA"
     gene            862..1179
                     /locus_tag="PXE92_002725"
     CDS             862..1179
                     /locus_tag="PXE92_002725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761901.1"
                     /translation="MLEIKRQVTILRPTNYGKEENHYKHLYILLTDPCFDGETGKGDM
                     ILSVNCSSIKDGKALDETCILKAGTHEFITRDSFIFYRHIKIDSLDEIKANIEAGYFI
                     QKP"
BASE COUNT          439 a          230 c          240 g          295 t
ORIGIN      
        1 cactttcaga cacattacta aaaaatctta aatattcccc aaatgcgaag cctatcgcag
       61 acagtaacgg gctatttatt cttgcacaga aaaaagcgaa agtatggatt tatagctata
      121 tcagccccaa aacaggcaag cgaagcacaa aaaatagaat cggtagctat ccgcaaatga
      181 gcttagtgga acaatcccca caggtatttg aacaaatcgc acgtctttaa aatattaaat
      241 taagagaaag cactatttgc gatgtagcag gagataaaac aatgtttgat gaattaaaaa
      301 tagcccaagc gaccgcctat ttgctacata aggcaggcgg aacaatggag catattaagg
      361 taatgaaatt gctttatctt gcggatcgct tatcgtggca aagatacggc tattctattt
      421 ctaatgatga atattattca ttgccttatg gaccggtatt aagcaacaca ctcaacctaa
      481 tgcgaggaga agaagcgagc ttataccaaa aaaccagtat ttggggcgag tggatagcag
      541 ataaggaaga tcacaaaatc agccttaaaa aatccgtaaa taccgaagat gaatacttct
      601 ttgattgcct ttcagagagc gacaccgaaa ttttagaaga ggtatttgcg acctttggaa
      661 attataagcc attcgcccta gtggaatata cccataaccc taaatacatt cccgaatggg
      721 aagacccaca aggcagaagc aagccgattt ctttaagcac gcttcttact aagctaggga
      781 aaacgccaag cgagatcgaa agcattttag agcaacaggc ggaaaaaggg acaatggata
      841 accttttcaa gggcttaggc aatgcttgaa atcaaaagac aagtaacgat tcttagaccg
      901 accaactacg gcaaggaaga gaaccactac aagcatttat atattctgct taccgatccg
      961 tgctttgatg gtgaaaccgg taaaggagat atgattttaa gtgtaaactg ctcaagcatt
     1021 aaagacggga aagcacttga tgaaacttgt attttaaagg caggaacaca cgaatttatc
     1081 acacgggaca gcttcatttt ctaccgccat ataaaaattg attcgttaga tgagattaag
     1141 gcaaatatag aagccggtta ttttattcaa aagccctaat taatgatgaa gcctatcaac
     1201 aaat
//
LOCUS       DANMBQ010000254         1183 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.260, whole genome shotgun sequence.
ACCESSION   DANMBQ010000254 DANMBQ010000000
VERSION     DANMBQ010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.260"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>1183
                     /locus_tag="PXE92_002726"
     CDS             <1..>1183
                     /locus_tag="PXE92_002726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HDL5761902.1"
                     /translation="FTAEWTSERAYLLVGVNGTYETTDWLAFHSVKLEKGNVATDWTP
                     APEDVDSAVSAVSAKIDTIQETLANADSALSSRIDTVNASVGSNSSKITQVSNAVASV
                     DGKLSATHTIKTETIAGGRKAIAGIAFGATADNRNAESSVIVMADKFEVVKNAQDGTP
                     VRLFGVVENKVAINGNLIATGSISGDHINANSVRTAVLTAGAIKTEHLAAGQISADKL
                     AIGLGGNLLVNPIFATPDLSIAPFGWNYWRGEVGDRLNIDTRTIFNRNEQDNYGLKNG
                     GLPNELVFSMRYSTTKETSDTGRIGWLSQDINVVPNKKYIASVWLACHRGQAKLVIEN
                     IEKPGGAYLGRIGNSEVITGYSAHQGEFKNMKRVKVVFTAPTSGCIRFALRLDNIQGK
                     A"
BASE COUNT          356 a          222 c          292 g          313 t
ORIGIN      
        1 cctttactgc cgaatggaca agtgagcgag cctatctgct tgttggtgta aatggtactt
       61 atgagaccac agattggtta gcgtttcaca gcgtcaaact tgaaaaaggc aacgtagcca
      121 cagactggac gccagcacct gaagatgtgg acagtgcggt tagtgcagtt tcggctaaaa
      181 ttgatactat tcaggagact ttagcgaatg ccgactctgc attaagctct cgcattgata
      241 cggtcaatgc ctcagtcgga tcaaactcat ctaaaattac ccaagtcagc aatgcggtag
      301 caagtgtgga cggcaaatta tctgctaccc ataccatcaa aaccgaaacc attgccggtg
      361 gacgcaaagc gattgccggt attgcatttg gtgcaacggc agataaccgt aatgcggaat
      421 cttctgtgat tgtgatggca gataaatttg aggtcgtgaa aaacgcccaa gacggcacgc
      481 cagtaagact atttggcgtg gtagaaaata aagtagcgat taatgggaat ttaatcgcaa
      541 caggctcgat ttcaggagac cacatcaatg caaattccgt cagaactgct gtattgactg
      601 caggagcgat taaaacggag catttggcag cagggcaaat atcggcggat aagttagcga
      661 ttgggctagg tgggaatttg ctggttaatc ctatttttgc aacacccgat ttgtcaatag
      721 ctccgtttgg ctggaactac tggcgaggag aagttggtga tcggctaaat attgacaccc
      781 gtactatttt caataggaat gaacaagata attacggact aaaaaatgga ggactaccaa
      841 atgagttagt attttcgatg cggtatagca ctacaaagga aacctctgat actgggcgaa
      901 ttgggtggtt atctcaggat attaatgttg tgcctaataa aaaatatatt gcctccgtat
      961 ggttagcttg tcatcgtggg caagctaaat tagtcattga gaatatcgaa aaacctggtg
     1021 gtgcttattt aggtcggata ggcaacagcg aggtaattac tggctatagt gctcatcaag
     1081 gcgaatttaa aaatatgaaa cgggttaagg ttgtatttac tgcacctact tcaggctgta
     1141 ttcgtttcgc attacgatta gataatattc aaggtaaagc taa
//
LOCUS       DANMBQ010000255         1126 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.261, whole genome shotgun sequence.
ACCESSION   DANMBQ010000255 DANMBQ010000000
VERSION     DANMBQ010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.261"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..264
                     /locus_tag="PXE92_002727"
     CDS             <1..264
                     /locus_tag="PXE92_002727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761903.1"
                     /translation="AEPKKIAQLLAIIDNLPLKNGGIETIQIYLETDLYLKIIGNLDN
                     QSDFQSLESYLYQQDLFETKTEQINVNHKNEIQFIFTLKHKGN"
     gene            266..802
                     /locus_tag="PXE92_002728"
     CDS             266..802
                     /locus_tag="PXE92_002728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761904.1"
                     /translation="MFSIHSKIEAAYSNPNSSLFQFICFIRKYPKALPFGIMMIFIIP
                     PMIMLIKSYIEVNHILKNIENDKINFNHQQNKYDSIINKAKNQNSQENNLTEINSNIQ
                     ILAEKHQLTIESLQWNLEQGKSIELSIIGNSRSLFDFIHSVKQIPYLKYNAISLIKSR
                     QDRKVEMNTTLVILANKE"
     gene            805..>1126
                     /locus_tag="PXE92_002729"
     CDS             805..>1126
                     /locus_tag="PXE92_002729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761905.1"
                     /translation="MRNWFLFITLFISFSVKANDPFFGEKQETQASGNIAESNVEFAK
                     NTENITACKVPDNLSAKNIVTDFDKMTLIGLVKINEVMRALFIDEKQQLLALKENDLL
                     NNEIE"
BASE COUNT          459 a          174 c          148 g          345 t
ORIGIN      
        1 gccgagccta aaaaaatagc acaactactg gcaataatag ataacttacc gctcaaaaat
       61 gggggaattg aaacgataca aatttatctt gaaaccgatc tctatttaaa aataatcggt
      121 aatttagata atcaatctga ttttcaaagt ctagaatctt atttatatca gcaagattta
      181 tttgaaacca aaaccgagca aattaatgtt aatcataaaa atgaaatcca atttattttc
      241 acactgaaac ataaaggtaa ttaatatgtt ttctatacat tctaaaattg aagctgcata
      301 ttccaatcca aacagttcat tatttcagtt tatttgcttt atccgaaaat atcctaaagc
      361 attaccattt ggcattatga tgatattcat cattccacct atgattatgt tgataaaatc
      421 ctatattgag gttaatcata ttttaaaaaa tatagaaaat gacaagatta actttaatca
      481 tcaacaaaac aaatatgact caattatcaa taaagctaaa aatcagaaca gccaagagaa
      541 taatttaacc gaaataaaca gcaacataca aatattagct gaaaaacacc aactaaccat
      601 tgaaagttta caatggaatt tagaacaagg taaaagtatt gaattgagta ttatcggcaa
      661 tagccgatct ttatttgatt ttatccattc agttaagcaa ataccttatt tgaaatacaa
      721 tgcgattagc ctcatcaaat ctcggcaaga cagaaaagtt gaaatgaata ctaccttagt
      781 catattagct aataaggaat aacaatgcgt aattggtttt tatttattac tttatttatc
      841 agtttttctg taaaagcaaa tgatcctttc tttggagaaa aacaggaaac tcaagcctca
      901 ggcaacatcg ctgaaagcaa tgtggaattt gcaaaaaata ctgaaaacat caccgcttgt
      961 aaagtacctg ataacctttc tgcaaaaaat atagtaactg attttgacaa aatgacactg
     1021 ataggattag ttaaaatcaa tgaagtaatg cgtgcattat ttattgatga aaaacaacaa
     1081 ttacttgctc taaaagaaaa tgacttgctt aacaatgaaa ttgaaa
//
LOCUS       DANMBQ010000256         1093 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.262, whole genome shotgun sequence.
ACCESSION   DANMBQ010000256 DANMBQ010000000
VERSION     DANMBQ010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.262"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..192
                     /locus_tag="PXE92_002730"
     CDS             <1..192
                     /locus_tag="PXE92_002730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761906.1"
                     /translation="PQDGSVIDWDNIKNAKLTKYPLDNSEKRTSYLGCFTTDVSESYT
                     VDGESVRDIQLNALRKVNE"
     gene            192..560
                     /locus_tag="PXE92_002731"
     CDS             192..560
                     /locus_tag="PXE92_002731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761907.1"
                     /translation="MKITLNLGIEYNGKIRRDCTVRLLTMGGQCTAQEMIADLGFEEN
                     SEALSKREQTLVDMAYLSQQVTFDGIYQGNVTAQFLFDNLATEDYWQLIEATLTLRKK
                     RLENGVSQSESESPANPDLA"
     gene            590..778
                     /locus_tag="PXE92_002732"
     CDS             590..778
                     /locus_tag="PXE92_002732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761908.1"
                     /translation="MILLSKFAITAEQVWQMPLLEVFAWIESYLESEGVKTPHSPMGA
                     NSEVKRESYVFTRCGKIE"
     gene            831..>1093
                     /locus_tag="PXE92_002733"
     CDS             831..>1093
                     /locus_tag="PXE92_002733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761909.1"
                     /translation="MAKNMKVQLELTAKDTASPVLNQAAKTAEKAFKNTERAAQKSGN
                     AQTQAAQKAANATESSNRKIEQSYRNARRVAADVSRARETLGVR"
BASE COUNT          348 a          216 c          274 g          255 t
ORIGIN      
        1 cctcaagacg gttcggtaat tgattgggat aacattaaaa atgcgaagct cactaaatac
       61 ccgttagaca atagcgaaaa acgcacctct tatttaggct gttttactac cgatgtgagc
      121 gagtcttaca ccgttgatgg tgagtcggtg cgtgatattc aactcaacgc attgcgtaag
      181 gtgaatgaat aatgaaaatc actttaaatc ttggcattga atataacggg aaaattcgcc
      241 gtgattgtac ggtgcgattg ctgacgatgg gcggtcaatg cacggctcaa gaaatgattg
      301 cggatttagg gtttgaggaa aactcggaag ccctatcaaa gcgtgaacaa accttggtcg
      361 atatggctta cctttcgcag caagttacct ttgatggtat ttatcaaggt aatgtgacgg
      421 ctcaattttt atttgacaat ttagctaccg aagactactg gcagttgatt gaggcaacgc
      481 tcacactccg aaaaaagcgg ttagaaaatg gggtgagcca aagcgagagc gaaagcccgg
      541 caaatcccga tttggcgtag cagaagcctt taagcagtac cgacaagcgg tgattttact
      601 ctcaaaattt gcaattaccg ccgagcaggt atggcaaatg ccgttgcttg aggtatttgc
      661 gtggattgag agctacttgg agagtgaggg cgtaaaaaca ccgcatagcc caatgggtgc
      721 gaatagcgaa gtgaaacgcg aaagctatgt ctttactcgg tgtggcaaaa ttgaataggg
      781 gcgaaagccc cttttttgta ctttaaaatg agtttaaaga gactttaaaa atggcaaaaa
      841 atatgaaagt gcaactggaa ttgacggcaa aagatactgc ctccccagtt ttaaaccaag
      901 ccgctaaaac cgccgaaaaa gcctttaaaa atacagagcg agcggcacaa aaaagtggca
      961 atgctcaaac gcaagcagca cagaaagcag cgaatgctac agaaagctca aatcggaaaa
     1021 tagaacagag ttaccgtaat gcccgccgag tggctgccga tgtgagccga gcccgtgaaa
     1081 cattaggtgt tcg
//
LOCUS       DANMBQ010000257         1076 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.263, whole genome shotgun sequence.
ACCESSION   DANMBQ010000257 DANMBQ010000000
VERSION     DANMBQ010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1076
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.263"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            107..697
                     /locus_tag="PXE92_002734"
     CDS             107..697
                     /locus_tag="PXE92_002734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL5761910.1"
                     /translation="MITVKFYGHLRKFGTDFKLEVKDTAEAIRALCTQIRGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVIKGAKSGGVFQAVLGVALIGAA
                     FFLGPVGWGVLGASSAMMMGAMGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSN
                     LNNLVAQGKPVPLAYGLIRTGSLVISQGVETMTVEV"
     gene            700..>1076
                     /locus_tag="PXE92_002735"
     CDS             700..>1076
                     /locus_tag="PXE92_002735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761911.1"
                     /translation="MGLFSRKRKNHTPKEAPETGRSKQIVNIVELLCEGEIEGLVDGF
                     KSIYLDGTKIQNDDDSYNFNNVSGQLNVGTQDQEVLEGYDSSQNEVSVGVEVKKKNGA
                     IVRTVTDERISRLRLTLGVRSLF"
BASE COUNT          321 a          194 c          270 g          291 t
ORIGIN      
        1 caaaagaaat cagaaaaaca atgtggacag ccgcaataat tctctttttg tttgcgttca
       61 tctggaaagc ccctgaattt atcactgcta ttcgttggtg gtaactatga ttacagttaa
      121 attttacgga cacttaagaa aatttggtac agactttaag cttgaggtaa aagacaccgc
      181 tgaggcaatt cgtgccttat gtacacagat tagaggattg cgtgaggcat tgcgagacgg
      241 tgtttataaa gtccgtatcg gtaagcaata tttagaccca tcagcccttg aaaaagggct
      301 tttttattgc ttgaagaaag ggcaaaccat tcattttacc cctgttatca aaggggcgaa
      361 aagcgggggt gttttccaag ctgtgttagg tgtagcctta attggagccg cattttttct
      421 cgggccggtc ggttggggag ttctaggggc ttcttccgca atgatgatgg gagcaatggg
      481 ggcatcaatg ttactaggag gagtttccca aatgctcacc aaaatgccaa aagcccccac
      541 aatgggtaat gaaacagaaa aagaaagctc aacggctttt tcaaatttaa ataacttggt
      601 ggctcaaggc aaacctgtgc cgttggctta tggcttaatt cggaccggct cgcttgtgat
      661 ttcacaggga gttgagacga tgactgtaga ggtataatta tgggattatt tagtcgtaag
      721 agaaaaaatc atactcctaa agaagcaccg gaaactggtc gctctaaaca gattgtgaat
      781 atcgtggagt tactctgcga gggtgaaatt gaaggcttgg tagatggctt taaatcgatt
      841 tatcttgacg gcacgaaaat ccaaaacgat gacgacagct ataattttaa taatgtgagc
      901 ggtcagttaa atgtcggtac gcaagatcaa gaggtattag aaggttacga cagctcacaa
      961 aatgaagtga gtgtgggtgt agaagtcaag aaaaaaaacg gtgcaatcgt ccgcaccgtt
     1021 actgatgaac gcatcagccg tttgcgttta acgttgggcg tgcggtcact attcca
//
LOCUS       DANMBQ010000258         1055 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.264, whole genome shotgun sequence.
ACCESSION   DANMBQ010000258 DANMBQ010000000
VERSION     DANMBQ010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1055)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.264"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            166..414
                     /locus_tag="PXE92_002736"
     CDS             166..414
                     /locus_tag="PXE92_002736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761912.1"
                     /translation="MISGEKMTWESLGASAIGGAIGGGIGATMKAGAVTASTLSALGG
                     GMGEGLYKSTSQGIKNSIGIKASCNQSGSDYGDGCDYQ"
     gene            426..629
                     /locus_tag="PXE92_002737"
     CDS             426..629
                     /locus_tag="PXE92_002737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761913.1"
                     /translation="MKIQFPISYQEFRENYFEKKPLLMKGAISQKDLLSWKSINEILP
                     RCDLISEDAIKVMHKGKRAHKKD"
     gene            668..1055
                     /locus_tag="PXE92_002738"
                     /pseudo
     CDS             668..1055
                     /locus_tag="PXE92_002738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611451.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
BASE COUNT          339 a          144 c          256 g          316 t
ORIGIN      
        1 ttattgaggc tatagttcta atagtatttg ttgtaattat aaacatcata gaggaatatc
       61 tcttatgaaa gagttaaaaa ttgaggattg ccaatttgtt tcggcaggct tgcacttgtt
      121 attgtaggag ctgttgctgg agctgcatat tatgttggga atggtatgat ttctggggaa
      181 aaaatgactt gggagagttt gggagcatca gctataggtg gggctattgg tggcggtatt
      241 ggagcaacaa tgaaagctgg tgcggtgaca gcgtcaacct tatctgcttt aggtggtggt
      301 atgggggagg gcttgtataa aagtacttct caaggtatca aaaatagtat tggtataaag
      361 gcgagttgca atcaatcagg ttcggattat ggtgatggat gtgattatca ataagagagt
      421 atattatgaa aattcaattt ccaatttctt atcaagaatt tcgtgaaaac tattttgaga
      481 aaaaaccact tttaatgaaa ggagcaatat ctcagaaaga tttactttct tggaagtcaa
      541 taaatgaaat attacctcgc tgtgatttaa tttctgagga tgcaattaag gtaatgcata
      601 aagggaaaag ggctcataaa aaagattagg ggctgtagta gattagcatc actgctatac
      661 tacaaaaatg aagataaccc attgtaaatt aaagaaatct ttgcagaaaa agcttcttga
      721 attttttgtt gctgaagtga ccgctagaac cgctgctgat ttattaggta ttcaacccaa
      781 tacggcagcc ctgttttacc acaaaattag gctggtcatt gaacaccatt tagcccttga
      841 agctcatgaa atttttgagg gaaaaattga ggtagatgaa agctattttg gtggtcatcg
      901 caaaggaaaa cgagggcgag gtgcggctgg gaaagtcgct gtattcggtt tgttgaagcg
      961 tcaaggaaag gtgtttacaa aataccaaat cagaaacgct aatgccggtt attacaagga
     1021 aaatcaagct tgacagctgg gtttatacgg atacc
//
LOCUS       DANMBQ010000259          991 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.265, whole genome shotgun sequence.
ACCESSION   DANMBQ010000259 DANMBQ010000000
VERSION     DANMBQ010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.265"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            26..715
                     /locus_tag="PXE92_002739"
     CDS             26..715
                     /locus_tag="PXE92_002739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDL5761914.1"
                     /translation="MQNNKTTYLNWYDLCVLTLILFGEAIYTSTQQYFITTEMQGNFE
                     ENLTFSNEQNYWALLTQLALLLIAMGYLKWRNFDFSRWVIRPSWLAFFSGIGLFILLS
                     LAMDLYFETLYGVYNLVYPEPFWAVLREVNISTVLYAILNGFYEEIFFLGICLAVKPE
                     YLKWAVIYSLIIRVSFHTYQGMESALGLGIWLGLIIYLLYSRSKQKNLFPFWVAHSIA
                     DILGLSLLAYF"
BASE COUNT          288 a          154 c          208 g          341 t
ORIGIN      
        1 aaaaaaattt acaaaggaga cattaatgca aaataataaa accacctacc taaattggta
       61 cgatttatgc gtgctaaccc tgatcctgtt tggtgaggca atttatacct caacccagca
      121 atatttcatc accaccgaaa tgcaaggtaa ttttgaagaa aatttaacct tttcaaatga
      181 acaaaattat tgggcattac tgacgcaact tgcattgttg ctgattgcaa tgggctatct
      241 aaaatggcgg aattttgatt tcagccgttg ggtgattcgt ccctcttggc tggctttttt
      301 tagcggtatc gggttgttta tcttgctctc gttagcgatg gatctctatt ttgaaacatt
      361 atatggtgtt tacaacctag tgtatccgga gccattttgg gcagtattga gagaagtgaa
      421 tatttctacc gtgctgtatg cgattttaaa cggcttttat gaagaaatct ttttcctcgg
      481 tatttgcttg gcggttaaac ctgaatattt aaaatgggcg gtgatttatt cactgattat
      541 tcgggtgagt tttcatacct atcaaggaat ggaaagtgcg ttaggattag gaatttggct
      601 cggtttaatt atttatttgc tctactcacg ctcaaagcag aaaaacctat ttccattttg
      661 ggtggcacac agtattgcgg atattttggg gctgagtttg ttggcttatt tttagttaaa
      721 ggtgctacat ttaagcggca taagttgata gagctgatcg taccagtagc ataaaaacat
      781 tattatttgt atggaaaggt gcttttaggt tacaatataa ccgatagtta ttggttataa
      841 ctaaaaatta tttttaattt aacggagcaa atatgaagag tatcaaaaaa ttaaccctag
      901 ccactttgat tttagtgggt ttaactgctt gtggtagcgg tggttcaggt agcagttcta
      961 ataatgctaa atcgaaacca caagttgagt t
//
LOCUS       DANMBQ010000260          986 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.266, whole genome shotgun sequence.
ACCESSION   DANMBQ010000260 DANMBQ010000000
VERSION     DANMBQ010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.266"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..>986)
                     /locus_tag="PXE92_002740"
     CDS             complement(<1..>986)
                     /locus_tag="PXE92_002740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761915.1"
                     /translation="GELYSSFLIAVGVKEFLDKGFIPNDNYRDIIALLPVALYVFHLR
                     SLKHIKNLESNSYLDEEGRDTVNKYKAFFSIFEAEIRDATCICDNKIVTINGEVCCDI
                     KEVARKIVIEFLNEVDIGNKVKFYYPDERHELFVELLIVLATLRIYRNRNIFFFEKGF
                     FNFFPEFITILGTGAFNGFLDFPSLVGKVFPEIIDTINEGLDLDIAIENFEVLSQEEM
                     TECMGLYEQALIKKAEEGEIGLLNVDEINSFYEDNSELILLAKQPMVEEIIPKPDSKA
                     SSAILKFFDSNSNILIAKLKESGLQLSAVALQNDQNIARVANVVYNLLPGMV"
BASE COUNT          330 a          199 c          120 g          337 t
ORIGIN      
        1 cttaccatgc ccggcaataa gttataaacg acatttgcta ctcgtgcgat attttggtcg
       61 ttttgtaatg ccacagcact taattgcaaa ccactttctt ttaatttagc aattaagata
      121 tttgagtttg aatcaaagaa ttttagaatt gcagaggagg ctttgctatc tggtttaggg
      181 attatctctt caaccatagg ttgtttagca agtaagatta gctcactatt atcttcataa
      241 aagctattta tttcatcaac atttaataaa ccaatttcgc cttcttcagc tttcttaatg
      301 agagcctgct catataaacc catacattca gtcatttctt cctgactcaa cacttcaaag
      361 ttctcaatcg caatatctaa atctaaaccc tcatttatcg tatcaataat ttctggaaaa
      421 acctttccta ccaaactagg gaagtctaaa aatccattaa acgcaccagt cccgagaata
      481 gtgataaatt cgggaaaaaa gttaaaaaac cccttttcaa agaagaatat atttctatta
      541 cgatatattc ttaatgttgc tagaacaatg agcagctcta caaaaagctc atgtctttca
      601 tctgggtaat aaaacttaac tttattacca atatccactt catttagaaa ttctataaca
      661 attttccttg ctacctcctt aatatcacag cacacctcac cattaattgt tacaatttta
      721 ttgtcacaaa tacatgttgc atctcgaatc tctgcttcaa aaatagagaa aaatgccttg
      781 tatttattta ccgtatctct tccttcttca tctaaataac tgttagattc tagatttttg
      841 atatgtttca aagatcttaa gtgaaagaca tataacgcta ctgggagtag agcaataata
      901 tctctataat tatcattagg tataaatcct ttatctaaaa actctttcac tcccactgca
      961 atcagaaagg aactatataa ttcacc
//
LOCUS       DANMBQ010000261          982 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.267, whole genome shotgun sequence.
ACCESSION   DANMBQ010000261 DANMBQ010000000
VERSION     DANMBQ010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..982
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.267"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..924)
                     /locus_tag="PXE92_002741"
     CDS             complement(<1..924)
                     /locus_tag="PXE92_002741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HDL5761916.1"
                     /translation="MFSDNKALHLGKIYHLIEQFELISRTDLAKLSGLAPASVTNLTK
                     ILIDNHFILERTVQTTLSRGRPSVGLAVSNFFWQLLCVTVSSHKIEISLCKLNGAEIY
                     KQDYTISAENYPRLNDFILNFITNFRQLYCVNTSQLLAVSISVIGKINAEKDSITQLG
                     NKNIFCNITSKLSPLFHCPILLSEHFQLWLLAESTVGSLINQDNAIFLQLDDTVNLSV
                     LLSGSLLSKQSKMNVDNMLMPRFSHLSDEIFPELDEIHRYKLVNQVTFPAIVRLIDRY
                     LPNNLKSQEQKISWLCQKIDENQPLALAILSH"
BASE COUNT          343 a          149 c          168 g          322 t
ORIGIN      
        1 atgcgataaa atagctaatg caagcggttg attttcatca attttttgac aaagccagct
       61 gattttctgt tcctgacttt ttaaattatt aggcaaataa cgatcaatga gtctcacaat
      121 agctgggaac gtcacctgat tgactaattt atagcgatga atttcatcta gttcagggaa
      181 tatttcatca ctgagatggc taaatctagg cataagcata ttatcaacat tcatctttga
      241 ttgtttagac agtaaactac cactaagcaa tacacttaga ttcacagtat catctaattg
      301 tagaaaaata gcattatctt ggttaattaa tgagccaacc gtagattctg caagcaacca
      361 cagctgaaaa tgttcactta ataaaatagg acaatgaaac agcggcgaga gtttagatgt
      421 aatgttacag aatatatttt tgtttcccaa ttgagtaata ctgtcttttt ctgcattaat
      481 tttaccgatc acactaatag atacagccag gagctgacta gtattaacac aatatagttg
      541 gcggaaattt gtaataaagt taagaataaa atcatttagc ctaggataat tttctgctga
      601 gattgtataa tcttgcttat aaatttctgc accattgagt ttacaaagtg aaatttcaat
      661 tttatgagat gaaacagtaa cacaaagtag ttgccaaaaa aaattagaaa cagctaatcc
      721 aacggagggg cgacctctgg ataaagtagt ctgaaccgta cgttctaaaa tgaagtggtt
      781 atctattagt attttagtca gatttgttac tgaagctggg gctaaccccg atagtttagc
      841 taaatctgtt cttgaaatga gttcaaattg ctcaattaaa tggtatattt tacccaaatg
      901 aagggctttg ttgtcagaaa acatttaaaa tccttatgtt agaattttta gatgacaatt
      961 attttttgat atgaaaaaaa ta
//
LOCUS       DANMBQ010000262          979 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.268, whole genome shotgun sequence.
ACCESSION   DANMBQ010000262 DANMBQ010000000
VERSION     DANMBQ010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.268"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            134..820
                     /locus_tag="PXE92_002742"
     CDS             134..820
                     /locus_tag="PXE92_002742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761917.1"
                     /translation="MAANSINASHIVGSSITADKLNVNNLAAISANLGKVTAGTITGT
                     TISGGTISGTTITGGIIKGARIEGLTGKFTGELEINQLIGGNIYEAKTWTSKATGKSK
                     TYSETKNSFALSDTYYEYVCQFVLPATKATRTLYVVHTPTGESKSETFYGSGSNRTPT
                     TITLPSVIDISNTISPNVSNPFNDSGAILIANTQYVVTCRAWCAGRGRSAKVNFRAII
                     SSTNGSSYQL"
BASE COUNT          344 a          178 c          202 g          255 t
ORIGIN      
        1 cccttggcaa aatgccggtg taaccgctat ccacggtggc tcaatagtta ctaataccgt
       61 tactgctcaa caaattgcag caaataccat taccgccaac gaaatcgcag ccggcacgat
      121 tgcagctcga aatatggcag caaactcgat taatgcaagt catattgtgg ggagttcgat
      181 cactgcggat aagctaaatg taaacaattt agcggcaata tcggcaaatc ttggtaaggt
      241 aactgctggt acaattacag ggacgacaat tagtggtggg acaatttcag gtacaacaat
      301 tacaggggga ataattaaag gagcaagaat tgagggatta acaggtaaat ttactggaga
      361 acttgaaatc aaccaattga tcggaggtaa tatctatgag gctaaaactt ggacatcaaa
      421 agcaacaggg aaaagtaaaa catattcaga aacgaaaaac agttttgcat taagtgatac
      481 atattatgag tatgtatgtc aatttgtact acctgctaca aaagcgacga gaacattgta
      541 tgttgtccac actccaacag gagagagtaa aagcgaaact ttttatggta gtggtagtaa
      601 tcggacaccg acaacaatta cattaccgtc tgtaattgat attagcaata ctatttcacc
      661 taatgtatct aacccattta atgattctgg ggcaatactc attgctaata ctcaatatgt
      721 agtaacgtgt cgtgcgtggt gtgcagggcg tgggagaagt gctaaagtga attttcgagc
      781 aattatatca tctacaaatg gttcatctta tcaattatag gaggcaaata tgaaaaaaat
      841 tatactactt acaacaatta tggtttcagc ttgtacaact caatataagc aagactatac
      901 aacaaaacca accttttgtt atcaactagc ccctcaagag caattaccgg ggaaaaactg
      961 tattggctca ggagggcat
//
LOCUS       DANMBQ010000263          976 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.269, whole genome shotgun sequence.
ACCESSION   DANMBQ010000263 DANMBQ010000000
VERSION     DANMBQ010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..976
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.269"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            51..126
                     /locus_tag="PXE92_002743"
     tRNA            51..126
                     /locus_tag="PXE92_002743"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:84..86,aa:Gly,seq:gcc)
     gene            214..>976
                     /locus_tag="PXE92_002744"
     CDS             214..>976
                     /locus_tag="PXE92_002744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HDL5761918.1"
                     /translation="MMKKITILGLGWLGLPLAEALQNKGWRVAGTKRTVGELAIECYP
                     LDLNALAVTSEIEQLLAADALVIALPLSQIRPENYGCGIQTLVSLAIEKGLKHLVFTS
                     STSVLPMKSGVFDENAVVDSANLLVKMENWLLSQPIHCDILRLAGLVGKKRHPVFYLA
                     GKQNLSGAGQPVNLVHLEDCIAAISLLLEQPNGQRIFHLCAEQHPSRKDYYSEMAKRF
                     GLADLHFSEENQPLVRLIKADKICQELGFRYYYPDP"
BASE COUNT          270 a          187 c          232 g          287 t
ORIGIN      
        1 gttcaagtct ggcctcgggc accatttaga aaatcaacaa tttaaaattt gcgggaatag
       61 ctcagttggt agagcacgac cttgccaagg tcggggtcgc gagttcgagc ctcgtttccc
      121 gctccaatct agaaataaaa tagatagcac cacgaggtgc tttttttgta cctgaatttc
      181 ccctcattcc aattttaatc ttgagaaacg taaatgatga aaaaaattac cattttaggg
      241 cttggctggc tcggactacc tttagctgaa gcattacaaa ataagggctg gcgtgttgca
      301 ggtactaagc gaacggtcgg agaattagcg atagaatgtt atcctctaga tttaaatgcg
      361 ttagcagtga caagcgaaat cgagcaatta cttgctgctg atgcgttagt gattgccttg
      421 ccccttagcc aaattcgccc tgaaaattac ggttgcggta ttcaaacatt agtttcgctt
      481 gcaatagaaa agggcttgaa acatctggtt ttcaccagct cgacttcggt tttgccaatg
      541 aaatcgggcg tttttgatga aaatgcagtg gttgattctg ctaacctatt agtaaaaatg
      601 gaaaattggt tgctgagcca gccaattcat tgtgatattt tgcgtttagc tggcttggtg
      661 ggcaaaaaac ggcacccggt tttttatttg gcgggaaaac agaacttgag tggagcaggg
      721 cagccggtca atttagtgca tttagaggac tgtattgcag ccatttcatt gctgttggag
      781 cagccgaacg ggcagcgtat ttttcattta tgtgccgaac agcacccaag ccgtaaagat
      841 tattatagtg aaatggcaaa acgttttggg ttagcggatt tgcatttttc tgaagaaaat
      901 caaccgcttg taaggctgat aaaagcagac aaaatttgcc aagagcttgg ttttcgttat
      961 tactatcctg atcctt
//
LOCUS       DANMBQ010000264          964 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.270, whole genome shotgun sequence.
ACCESSION   DANMBQ010000264 DANMBQ010000000
VERSION     DANMBQ010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.270"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            223..964
                     /locus_tag="PXE92_002745"
                     /pseudo
     CDS             223..964
                     /locus_tag="PXE92_002745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524908.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication protein"
BASE COUNT          343 a          167 c          151 g          303 t
ORIGIN      
        1 gactcctcta atagtccact cttgttccat tttggaacat ttttgtatat tatttcgcct
       61 tttctttctc attgtgttct atgtaggcaa cagcattttt tgcaaagtga tcgacgagaa
      121 cattcattac ttcagtccat tttacaggtc ttcctatctt cattccaact tccatcgcta
      181 atctttctat cttgagtttt ttctctaatt taatattgaa cagagcttta tgaaatggtt
      241 gatatagaac aaacgtcagt tgattggatt gatgtaactt attcagctca tattgattcg
      301 gaatctatcc aaaaacaact tatctctttt ttccaaaaca tccatttagg acaaacacgt
      361 cgtacaagac ataacaaaga atatgacaca acggcagaat ggaattcagg ttcagaacac
      421 cgtattttaa aagtttatct aaaaggtaat gaagttcaaa aaagactaca agaagcccag
      481 cacgacttca aaaaatcacc aagtaaaaag tatctgcaaa actcaattca agtattaagt
      541 aatccaaatc tcattgaatt ttcaaaaaaa tgtgttcgtt ttgaagcaag attaaaacaa
      601 cgttatttag ataaacatca aatcccacgc aatttatttg acttaattaa atatcagaga
      661 gattacgaag agcagggtag aagcctgatt aaagacctat ggcaagacgc attcaaagac
      721 attattaagg ctgtcgggga aagcaatatg aatatttaca acagagatca aattcagcgt
      781 ttattacgga aaaattattt ttcaatcact ccaaaaggaa atatgagcta tgcaaaggct
      841 gatcgtttat tcagctttta taagaattta ctaagtgatg gctatagaga aacgctagat
      901 tctatgccaa gaaacacatt ttggagatat gaaaaggatc ttatggccgt tggtttaact
      961 aaaa
//
LOCUS       DANMBQ010000265          957 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.271, whole genome shotgun sequence.
ACCESSION   DANMBQ010000265 DANMBQ010000000
VERSION     DANMBQ010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 957)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 957)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..957
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.271"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>957
                     /locus_tag="PXE92_002746"
     CDS             <1..>957
                     /locus_tag="PXE92_002746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcription antiterminator BglG"
                     /protein_id="HDL5761919.1"
                     /translation="FYNQQPELLLPKLNFNYQQTNEYQFVIKLLEQLREQDSRFEFNP
                     EVIRFLTYIAIASTDLYRFKDCNSDNYPLLLDKAWEIHRFIFTQFSAYLNLSEIHDDT
                     CRKDLLKMLIPIAMKMMLSISDDVDLGLFNQTELHRNPILAHTVEKLVDDIEKNYGYS
                     LSIREQYFIFDIFSGMVNRIELERKPLRLAIIALNGRLSTQQLKRNIKRYFSDYILKI
                     ETKVLYELAIMEDKPYDYYLCNEYGKNMAIPYKPIYFADSSLNENEYATSLNEVFYHA
                     YQYDEVLPSIKSIEIEAQYRLNEFHLEQEYLNYEQIILENKQ"
BASE COUNT          326 a          152 c          164 g          315 t
ORIGIN      
        1 tttttataat caacagcctg agttattgtt accgaagtta aattttaatt atcaacagac
       61 gaatgaatat cagtttgtaa ttaagttact ggaacagctt cgtgaacaag acagtcgttt
      121 tgagtttaat ccggaagtta ttcgatttct gacctatatt gcgatagcca gtacagatct
      181 ctaccgcttt aaagattgta attcggataa ttacccattg ttgctagata aggcttggga
      241 aattcatcgt tttattttta ctcagttttc tgcatattta aatttatcgg aaattcacga
      301 tgacacttgc cgtaaagatt tgcttaaaat gctgatccct atcgcaatga aaatgatgct
      361 tagcatttca gatgatgtgg atttagggct atttaaccaa acagaactac atagaaatcc
      421 aattttggct catacagtag aaaaattagt ggatgacatt gaaaaaaact acgggtatag
      481 cctatctatt cgagaacagt attttatttt tgatattttt tccggaatgg ttaatcgaat
      541 tgaattagaa cgtaaaccgc tccgactggc gattattgcc cttaatggca gattaagcac
      601 ccaacagtta aaacggaata ttaagcggta cttttccgac tatattttga aaattgaaac
      661 caaagtgcta tatgagcttg ccataatgga agataaacct tatgactact atctctgtaa
      721 tgaatatgga aaaaatatgg ctattcccta taagcctatt tattttgctg acagtagttt
      781 aaatgaaaat gaatatgcaa catcactcaa cgaagtattt tatcacgctt atcaatatga
      841 tgaggtgttg cctagcatta aatcgattga aattgaagca caatatcgcc taaatgagtt
      901 tcatcttgag caagaatatc ttaattacga acagattatt ttagaaaata aacaaga
//
LOCUS       DANMBQ010000266          953 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.272, whole genome shotgun sequence.
ACCESSION   DANMBQ010000266 DANMBQ010000000
VERSION     DANMBQ010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.272"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            141..>953
                     /locus_tag="PXE92_002747"
     CDS             141..>953
                     /locus_tag="PXE92_002747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5761920.1"
                     /translation="MLNWAGKSTAYQTLQTPTSKTLTPCEEESVDFENTQNIFIEGEN
                     LDVLKALQKSYFNSVKMIYIDPPYNTGNDFIYNDSFADTKADYAEKVGDVDEHGKLKR
                     AFVRNSKENGHYHSNWLNMMLPRLHLAKNLLRDDGVIFISIDDNEQAQLKLLCDEVFG
                     EENFVAILSVENNPKGRKNSKFISVSNDFCIIYAKNKEMGKFVENIPKNAKDMCQDEN
                     GHYVHASGKRVLVGENKFNQPVTDFTSDKHYSVYFNKLDDDIILKFEDSLDDK"
BASE COUNT          331 a          156 c          178 g          288 t
ORIGIN      
        1 ttgccaactt ttcgcttaaa gatcaacaac tttctcaatt aaaatccctt ttacctgaaa
       61 ttttcaccga aggtaaaatc gacttcgaca aattccaaca acttttttcg gataattttt
      121 ccaccgaacc tgaccgctat atgctcaact gggcaggaaa atcaacagcc tatcaaacct
      181 tacaaacccc aaccagcaaa acgctcactc cttgcgagga agagagtgtg gattttgaaa
      241 atacgcagaa tatctttatt gagggtgaaa atttagatgt attaaaagcc ctgcaaaaat
      301 cctacttcaa ttcggtcaaa atgatttata tcgatccgcc atacaataca ggcaacgatt
      361 ttatttataa cgacagtttt gccgatacca aagcagatta tgcggagaaa gtgggcgacg
      421 ttgatgaaca cggcaaattg aaacgagcct ttgttcgtaa cagcaaagaa aatgggcatt
      481 atcacagtaa ctggctgaat atgatgttgc ctcgtttgca tctcgcaaaa aatttactgc
      541 gtgatgacgg ggtgattttt atttcaattg atgataacga acaggcacag ctgaaattgc
      601 tttgtgatga agtgtttggg gaggagaatt ttgttgccat attatcagtt gaaaataatc
      661 cgaaaggtag aaagaattct aaatttattt ctgtaagtaa tgatttttgt attatttatg
      721 ctaaaaataa agaaatgggg aaatttgttg aaaatattcc taaaaatgct aaggatatgt
      781 gtcaagatga aaatggacat tatgttcacg caagtggaaa acgagtatta gttggggaaa
      841 acaaatttaa tcagcctgta acagatttta cctcagataa acactattca gtttatttta
      901 ataaattaga tgatgatatt attttaaagt tcgaagattc tcttgatgat aag
//
LOCUS       DANMBQ010000267          949 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.273, whole genome shotgun sequence.
ACCESSION   DANMBQ010000267 DANMBQ010000000
VERSION     DANMBQ010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..949
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.273"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(29..340)
                     /locus_tag="PXE92_002748"
     CDS             complement(29..340)
                     /locus_tag="PXE92_002748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761921.1"
                     /translation="MTKTKHKHPLAEAFYQLGKDVGEINRRLVVVDEQSLKLQELKQT
                     INEQTEQIKTLGTVVNKLIDALQQSQSLNVRSESAVAATENQDHLNDGVQYQGPGRAR
                     A"
     gene            complement(333..482)
                     /locus_tag="PXE92_002749"
     CDS             complement(333..482)
                     /locus_tag="PXE92_002749"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761922.1"
                     /translation="MDNILITIHPTETIDITIDKLVVIHIGEEYGDTPDFLTIYQQAK
                     ELNDD"
     gene            complement(716..>949)
                     /locus_tag="PXE92_002750"
     CDS             complement(716..>949)
                     /locus_tag="PXE92_002750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761923.1"
                     /translation="QDDGSLNAKYVVGTGEESDSEVTNFVIITSEYKYIDAQSAKAIT
                     DAPLTKEDIGKTPTQIMLGRIYNHLKETGQIVV"
BASE COUNT          225 a          195 c          187 g          342 t
ORIGIN      
        1 gccgttttga gtgcagatgt taacagagtt aagctctagc acgtcctggg ccttgatact
       61 gcacaccatc atttaaatga tcttgatttt cggttgctgc tacagcagat tctgatctta
      121 catttaaact ttgtgactgt tgtaatgcat caataagttt atttaccact gttccgagtg
      181 ttttaatttg ctcggtttgc tcattaatag tctgctttaa ctcttgcagt tttaatgatt
      241 gctcatccac aaccactaat cgacggttaa tctctcctac gtctttacct aattgataaa
      301 atgcttctgc aagtgggtgt ttgtgtttag ttttagtcat cgttaagctc ctttgcttgt
      361 tggtatatag ttaaaaagtc aggtgtgtca ccatactcct cacctatatg gataactacc
      421 agtttgtcta tggtgatatc aatagtttcg gttggatgta tagtgattaa gatattgtcc
      481 atattcccgc cttaaatttg ggtttggtca gggataagtt ggatcgtgcc gtagtactgc
      541 cattttgggt ggatagctca atttgaggct ctgtgctgcc ctctactatg gcgtgtaaat
      601 ccagcctaat accctctaaa tttacaggct cgccatttgt ttgcctaaaa aaaaaggcga
      661 taacttacgt catcgcctct gaaaaactta aatttatgct tttgcattta gacccctaca
      721 ctacaatctg accggtttct ttgaggtggt tgtagatacg tcctaacata atctgcgttg
      781 gcgttttgcc aatatcctct tttgttagcg gtgcatcagt aatcgctttg gctgattgag
      841 catcaatata tttgtactca cttgtgatga ttacaaagtt tgttacctcg ctatcgctct
      901 cctcacctgt gccaacgaca tatttagcat tgagtgagcc gtcgtcttg
//
LOCUS       DANMBQ010000268          946 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.274, whole genome shotgun sequence.
ACCESSION   DANMBQ010000268 DANMBQ010000000
VERSION     DANMBQ010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.274"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            99..>946
                     /gene="msrA"
                     /locus_tag="PXE92_002751"
     CDS             99..>946
                     /gene="msrA"
                     /locus_tag="PXE92_002751"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005546455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL5761924.1"
                     /translation="MKYNQLLLCLVSAIFTTSSIANITTPNEMRSENLQDIYLAGGCF
                     WGIEAYMEKIYGVKEATSGYANGKTEQTAYRIIGQTDHAETVHVTYDANKISLEKLLQ
                     YYFKVIDPTSKNKQGNDIGRQYRTGIYYQNEQDKQIILKEIQAQQAKYKQKIQVQVEP
                     LKHYILAEEYHQDYLKKNPNGYCHIDLNQANSIIIDPKDYPKPSDATLKMKLTPLQYS
                     VTQRKNTERSFSNEYWDNTAPGIYVDITTGEPLFSSLDKYDSGCGWPSFTKPIINEVV
                     NYTEDN"
BASE COUNT          363 a          169 c          160 g          254 t
ORIGIN      
        1 aattttgatc ttagcaaaaa agtaagaaat tatgaatgtt taaggttaaa ccctcatcct
       61 taaaaaataa aattacataa gttataaagg agaactggat gaaatacaat caactgttac
      121 tatgtttggt gtctgctatc tttaccacct cctcaatagc aaacatcaca acccctaacg
      181 agatgcgatc tgaaaactta caggatattt acttggcagg aggatgtttc tggggcattg
      241 aagcctatat ggaaaaaata tatggcgtaa aagaggctac atcgggctat gccaatggca
      301 aaactgagca aactgcttac cgaattatcg ggcaaaccga tcatgcagaa acagttcacg
      361 tgacctatga tgctaataaa atttctttag aaaagctgtt gcaatattac tttaaagtaa
      421 ttgatccaac cagtaaaaat aaacaaggta atgatattgg ccgccaatat cggacaggta
      481 tttattatca gaatgagcaa gataaacaaa ttattttaaa agaaatacaa gctcaacaag
      541 caaaatacaa acaaaaaata caagtgcaag tagaaccatt aaaacattat attttggcag
      601 aagagtatca tcaggattac ctaaagaaaa atccaaatgg ctactgccat attgatttaa
      661 accaagccaa cagcattatt atcgatccga aagattatcc taaacctagt gatgcaacat
      721 taaaaatgaa attaacgcct ttgcaatata gcgttaccca acgtaaaaat actgagcgtt
      781 cattcagcaa tgaatattgg gataataccg caccgggcat ttatgttgat ataactacag
      841 gagagcctct tttttcatct ctcgataaat atgactccgg ctgtggctgg ccaagtttta
      901 ccaaaccaat tatcaatgag gttgttaact ataccgaaga taatag
//
LOCUS       DANMBQ010000269          943 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.275, whole genome shotgun sequence.
ACCESSION   DANMBQ010000269 DANMBQ010000000
VERSION     DANMBQ010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.275"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            422..607
                     /locus_tag="PXE92_002752"
                     /pseudo
     CDS             422..607
                     /locus_tag="PXE92_002752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249206.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            628..813
                     /locus_tag="PXE92_002753"
     CDS             628..813
                     /locus_tag="PXE92_002753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761925.1"
                     /translation="MVDFSILILVIVLPVIFVKVIDVLLLSKLDMSKEKNDKCQIIIY
                     LFIIILLGAYKSYFIQK"
BASE COUNT          322 a          116 c          186 g          319 t
ORIGIN      
        1 tagtattatt tttagaatta tttttaatat tggtttttgt gatcagaatt agattaaagg
       61 gagaatgaaa tgaaagaacc atcaatttta caattaagct tagtagttgg agggaattct
      121 gaaaataagg ctaatcaacc agatcttgta tcttatggcg ttgcttttgc tacagggttt
      181 gcaagagggg ggctttaggc ggtttatcca gtacttctgt taatttagcc cttgatttag
      241 cgaggagcct acctattaca atacatgaaa attctttacc tagcggtgta aaagaattaa
      301 ttccatcatc tttaccaata aagcctacgt ttggagttcc aggtagaacg aataataacc
      361 aatctggctc aaactacgat tgtggtgatg gtacagatta tcaaggctag tggagatgaa
      421 aatgaaaatt caatttccaa tttcttatca agaatttcgt gaaagttatt ctgagaaaca
      481 accactttta atgaaaggtg ctatagagta gcaagattta ctttcttgga aggctatcaa
      541 tgaagtatta cctcgttgtg atttactttc tgaagatgca attaaagtaa tgtataaagt
      601 aagttgaaat actttaatgg agaaagtatg gtggattttt ctattttgat attagttata
      661 gtattgcctg ttatttttgt gaaagttata gatgtactgt tgcttagtaa gttagatatg
      721 agtaaggaaa aaaatgacaa atgccaaata ataatatatt tatttataat aattttactt
      781 ggggcatata agagctattt tattcaaaaa taaataagag gagagaaaat gaaagatctt
      841 agtattaagg attgtgaaat aatatatgga ggcatagccc ctttgtggtg ggatggtact
      901 ggcattacat catactggga actaaattat accaccctac cac
//
LOCUS       DANMBQ010000270          937 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.276, whole genome shotgun sequence.
ACCESSION   DANMBQ010000270 DANMBQ010000000
VERSION     DANMBQ010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 937)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 937)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..937
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.276"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>937
                     /locus_tag="PXE92_002754"
     CDS             <1..>937
                     /locus_tag="PXE92_002754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HDL5761926.1"
                     /translation="LINHKISSNLAEKAITFIEAKVGSALQPGWYLVNQAPKSRYDSE
                     NRYVHYNKSPIKLIAWGYFNGIINAATNLHTVSPNLDIEKLRQFITDLRLSFPIQAPE
                     VTNDDMHHPNEIRNLVIALNLVQDPTEHIDELPKKVYPSDLFNFGKAQKTLVGSVSII
                     YRNVWNEIRTQHFDGEDAILKALKLVSNRIYQGNSSPQSVNVFCYSKYLRSELRDFVA
                     DLVHKCITIQTGCLLQENEFSTLKVAGKTWQFLFHKKTFSIKQIDEQQAVENLNSFAK
                     TKQNAKSENEKKKEFPQQISEFASEGFLQFFFEDNV"
BASE COUNT          332 a          149 c          161 g          295 t
ORIGIN      
        1 tttaattaat cataaaatat cgtccaattt agcagaaaaa gcaattacat ttattgaagc
       61 taaagttgga tctgcgttac aacccggttg gtatttagtt aatcaggcac ctaaaagtcg
      121 ttatgactct gaaaatcgtt atgtccatta taataaaagc ccgattaagc ttattgcttg
      181 ggggtatttt aacggcatta ttaacgcagc aactaattta catactgtta gccctaattt
      241 agatatcgag aaattgcgac aatttatcac cgacttgcgc ttatctttcc caattcaagc
      301 gccggaagtg accaatgatg acatgcatca ccctaatgaa attcgcaatt tggttatagc
      361 gcttaattta gtacaagatc caaccgaaca tatcgatgaa ctaccaaaaa aagtttatcc
      421 aagcgatctg tttaattttg gtaaggcaca aaaaacgtta gttggtagtg tgagcattat
      481 ttatcgaaat gtatggaatg aaattcgaac tcaacatttt gacggtgaag atgctatttt
      541 aaaagcacta aaattggtat ccaatcgaat ttatcaagga aattcttcac ctcaatcagt
      601 taatgttttt tgctatagta aatatctacg tagtgagtta cgtgattttg tggcagattt
      661 agttcataaa tgtattacaa ttcagactgg ttgtttactg caagagaatg aatttagcac
      721 tttaaaagta gcaggaaaaa cctggcagtt tctttttcat aaaaaaacat ttagcattaa
      781 acaaattgat gaacaacaag cggttgaaaa tttaaattct tttgcaaaaa ccaagcaaaa
      841 tgctaaaagc gaaaatgaaa agaaaaaaga atttccgcag caaattagtg aatttgccag
      901 tgaaggcttt ttacagtttt tctttgaaga caatgtc
//
LOCUS       DANMBQ010000271          905 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.277, whole genome shotgun sequence.
ACCESSION   DANMBQ010000271 DANMBQ010000000
VERSION     DANMBQ010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.277"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>905
                     /locus_tag="PXE92_002755"
     CDS             <1..>905
                     /locus_tag="PXE92_002755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761927.1"
                     /translation="SKGGFKRCVNIPFFRFSKFFLNNAQRTAFSYVTHYIKKHSYAYS
                     KADNIQELLVKFFSRKQPVMQSAFNHQKRIVKWLWAEFWDKNIISMTLRIDGYRNANL
                     WHYLRYQSRIEVLYKIANEHPNLLPLLAYVKPEYWKCSDLFSYQNWVRSRDKQPFILY
                     AKCQDKMLCESKGQWRWLKKQSRIVVDQCFLHVNQWQLLTEIQMPFKIPVCVICFILT
                     NFSMISCELDRSRQRRLLSIFIQYIYHYWKDNGFRQLKIHLSHLRVLFQDIEDYMIHE
                     GYLHGIPQTWQHLVYHLNLINSNTS"
BASE COUNT          309 a          134 c          156 g          306 t
ORIGIN      
        1 tcaaaaggtg gatttaagag atgtgttaat atccctttct ttagatttag taagtttttc
       61 cttaataatg cacaacgaac agccttttca tatgtaactc attacattaa gaaacattcc
      121 tatgcctata gtaaggcaga caatattcaa gaattattag taaagttttt ctctagaaag
      181 caacctgtta tgcaaagtgc atttaatcat caaaaaagga ttgttaagtg gttatgggct
      241 gaattttggg ataagaatat tatctcgatg acacttagaa ttgatggtta tagaaatgct
      301 aacttatggc attatttacg ttatcaatca cggattgagg tattgtataa aatagcaaat
      361 gaacacccga atctactacc attattagcc tatgttaaac ctgagtactg gaaatgctcg
      421 gacttattta gttatcaaaa ttgggtaaga agccgtgata aacagccttt tattttgtat
      481 gctaaatgcc aagataagat gttatgtgaa tcaaaggggc aatggagatg gttaaaaaaa
      541 cagtcgagaa tagttgtaga tcaatgtttt ctacatgtta atcaatggca gttattaaca
      601 gaaattcaaa tgcctttcaa gatcccagta tgtgtcatat gtttcatact tactaatttt
      661 agcatgatca gctgtgagtt agatcgatct agacaacgtc gattactctc tatttttatt
      721 caatatatct atcattattg gaaagataat gggtttagac aattaaagat acatctttct
      781 catctgagag tgctttttca agatattgaa gattacatga tacatgaggg gtatttacat
      841 ggtatacctc agacttggca acatttggtt taccacctca accttataaa ttcaaataca
      901 tcaaa
//
LOCUS       DANMBQ010000272          890 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.278, whole genome shotgun sequence.
ACCESSION   DANMBQ010000272 DANMBQ010000000
VERSION     DANMBQ010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.278"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(5..490)
                     /locus_tag="PXE92_002756"
     CDS             complement(5..490)
                     /locus_tag="PXE92_002756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761928.1"
                     /translation="MIQNDPRDAIILSLLANAVYGGHNNSQISYQETEEVNLYARLRQ
                     VEGDVREIKSNYLTKEAFYKAGGSTLIALVVTAGIALWTVYSHLDTKVEARFSKIDDK
                     FVQVETNIKNLDIRLTKVESRLDNVEQRLDNVEQRLGNMEKKIDGVDNKLDLLLQQFK
                     R"
     gene            complement(495..875)
                     /locus_tag="PXE92_002757"
     CDS             complement(495..875)
                     /locus_tag="PXE92_002757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761929.1"
                     /translation="MNNKRIKPEQFADFITQRTGRNLTCPICNSQEHYLHDGYDTFTE
                     LCGEKIIGVPTIPYRIEPSPDEVMKFAAPEFHSLHFNEREGTKYWLDQKARTAVIVTC
                     VCCNNMLFFDRERILEWIKGSQNE"
BASE COUNT          251 a          178 c          143 g          318 t
ORIGIN      
        1 tattttatct tttgaattgt tgtagtaaca gatcgagttt attatcaacc ccatctattt
       61 tcttctccat attgcctagt cgctgctcaa cattgtctag tcgttgttcg acattatcca
      121 atctagattc aactttagtg aggcgaatat caagattttt gatattggtc tctacttgga
      181 caaacttatc atcaattttc gagaatcgag cttcaacttt ggtgtcaagg tgtgaatata
      241 ctgtccataa tgcaattcca gcagtaacta ctaatgcaat gagtgtagag ccaccagctt
      301 tataaaaagc ctctttcgtc aaataatttg acttgatttc tcttacatcg ccttcaactt
      361 gtcttaatcg agcatataaa ttcacttctt ccgtctcctg ataactaatt tgtgaattat
      421 tatgcccgcc gtatactgca tttgcaagta aggatagtat gattgcatct ctaggatcat
      481 tttgaatcat tggtctattc attttgtgag cccttaatcc attctaaaat tctctctctg
      541 tcgaaaaaaa gcatattatt acagcaaaca caagtgacaa taacggctgt tctcgctttt
      601 tggtctaacc aatattttgt tccttcccgt tcattgaaat gcaaagaatg aaattcagga
      661 gctgcaaatt tcataacttc atcaggagat ggctctattc ggtatggaat ggttggaaca
      721 ccgataattt tctctccgca taattccgta aaagtgtcat agccatcgtg taaataatgt
      781 tcttggctat tacaaatagg gcaagttaaa ttccgcccag tacgttgcgt gataaaatcc
      841 gcaaactgtt caggtttaat gcgtttatta ttcattttaa cttcctttct
//
LOCUS       DANMBQ010000273          871 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.279, whole genome shotgun sequence.
ACCESSION   DANMBQ010000273 DANMBQ010000000
VERSION     DANMBQ010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..871
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.279"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..624
                     /locus_tag="PXE92_002758"
     CDS             <1..624
                     /locus_tag="PXE92_002758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761930.1"
                     /translation="EIIKDDNQIGFGFCEASDLSLIEDETKKIKAAMSLIDDLDPDTS
                     NEIKCFIDTIYLTKEGLNGERFMRSGTNFYMWGMMFLYINKEHSILYYADHIIHECAH
                     TALNIINATDELVTNSADERFKAPLRKDTRPMIGLFHALFVLHRICSSFQKMKEKIDD
                     VYYDEFNHRLNDNLLKLHETYQTVRENAKTTEIGEKILNEIAKTWKL"
BASE COUNT          297 a          106 c          148 g          320 t
ORIGIN      
        1 gaaattatta aagatgataa ccaaattggg tttggatttt gtgaggctag tgatttatct
       61 ttaattgagg atgaaactaa aaaaatcaag gcagcaatga gcttaattga tgatttagac
      121 cctgatactt ctaacgagat aaaatgtttc attgatacaa tttatttaac aaaagaaggc
      181 cttaatggcg agcgatttat gcgttctggc acaaattttt atatgtgggg aatgatgttt
      241 ttgtatataa ataaggaaca ctctattctt tattatgcag atcatataat tcatgaatgt
      301 gctcatacag ctcttaacat tataaatgca actgatgaat tagtaacaaa ttcagctgat
      361 gaacgtttta aagcaccttt aagaaaggat actcgtccta tgattgggct atttcatgcg
      421 ttgtttgtac tccatagaat atgttcctcc tttcaaaaaa tgaaagaaaa gatagatgat
      481 gtttattatg atgaatttaa ccatagatta aatgataacc tgttgaagtt acatgaaaca
      541 taccagactg ttagagaaaa tgcaaaaacg acagagattg gtgagaaaat tttaaatgaa
      601 attgccaaaa cttggaaact ttaatcaatc tgaaattatg atgagaatgt tagttttctt
      661 taattcaata ttctcatcta cattaattgc ttttgctatt ttctttttta tggataatgg
      721 tataaatgct catgaggtat cattcttggt atctgttaaa ttttgggcga ttatgctttt
      781 ttcattgtct atttatattt ttaaccagac tcaaataagg tacttatttg tattgtcggg
      841 tatattaaag attattgcag ttattattat t
//
LOCUS       DANMBQ010000274          855 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.280, whole genome shotgun sequence.
ACCESSION   DANMBQ010000274 DANMBQ010000000
VERSION     DANMBQ010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 855)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 855)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.280"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>855
                     /locus_tag="PXE92_002759"
     CDS             <1..>855
                     /locus_tag="PXE92_002759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761931.1"
                     /translation="ASIAQQNLQSIWRTDAQSAVDALKIGGANLLVDSEYLTTARWGG
                     SSRVASSQYGDRRLTQVFVTQAGTGHFGVTQGTQKATTRIRQGETYTLSLNAQGTAGF
                     TRTGLNYVYLIREDGGNFRLPTLPLTASLSQRPKVTFTAPWTSNQVRLLIGANGIFEA
                     TDWFAFHSVKLEMGNVATGWTPTAKDIDDKVSAVQSNLTAYQAAQAKADQAKATQISG
                     LTTRMGAAESNLTRTERAVTELNQTTVTTLRDLTARTKTTEGSLSRLETAKANKTEVA
                     SIAQSSLQS"
BASE COUNT          235 a          212 c          224 g          184 t
ORIGIN      
        1 gcaagtattg cccagcagaa cttacagagc atttggcgca ccgatgcgca aagtgcggtg
       61 gatgccttga aaatcggtgg tgcaaatcta ctggttgata gtgagtattt gacgacagcc
      121 cgttggggcg gtagctcacg agtggcaagc tcgcaatatg gtgatcgtcg cttgactcaa
      181 gtgtttgtga cccaagcagg cacagggcat tttggtgtga ctcaaggcac acaaaaagcc
      241 actacgcgta ttcgtcaggg tgaaacctat accttgtcac taaatgcgca ggggacggca
      301 ggttttaccc gcacagggtt aaactatgtg taccttatcc gcgaagatgg tggcaatttt
      361 agattgccaa ctttgccgct tactgcatca ttgtcccaac gccctaaagt gacatttact
      421 gcgccgtgga cgagcaatca agttcggtta ctgattggcg caaatggcat atttgaggcg
      481 acagactggt tcgcatttca cagcgttaag ctcgaaatgg gtaatgttgc cacaggctgg
      541 acaccaaccg ccaaggatat tgacgacaaa gtatcagcgg ttcagtccaa cctcaccgct
      601 tatcaggcgg cacaagctaa agcagatcaa gccaaagcta cgcagatttc ggggctcaca
      661 acccgaatgg gggcagcgga aagtaacctc actcgcaccg aacgggcagt gacggaactt
      721 aatcagacaa cggtgacgac actgcgtgat ctaaccgcgc gcaccaaaac aacggaaggt
      781 tcgctctctc gtttggaaac cgccaaagca aataaaactg aggtggcaag tattgctcaa
      841 agctccttac agtca
//
LOCUS       DANMBQ010000275          839 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.281, whole genome shotgun sequence.
ACCESSION   DANMBQ010000275 DANMBQ010000000
VERSION     DANMBQ010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.281"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            18..791
                     /locus_tag="PXE92_002760"
     CDS             18..791
                     /locus_tag="PXE92_002760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL5761932.1"
                     /translation="MNLSNALKLIKYNELDVLEVNHNKFKAKIALQGAQLLSWQPYNA
                     EQDVLWLSEIEPFRIGSAIRGGIPICYPWFGSIKEPAHGTARIQEWRLVEHTCSDENV
                     GLVFALENKAKMEMMLGETCELYFTHLDPEPAQLALHSYFNIGDIEKVEVQGLPTRCF
                     DKLTDQEVEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETVLWNPWH
                     NTVSAMTETAYQNMVCVETARINTLLQQNETLGVRVLVR"
BASE COUNT          277 a          134 c          187 g          241 t
ORIGIN      
        1 catcaaagga ataaattatg aacttgagta atgcattaaa attaatcaaa tataatgaat
       61 tagacgtgct agaagttaat cacaataaat tcaaagctaa aattgcatta caaggagcac
      121 aattgctaag ttggcagccg tataatgcag agcaagatgt gctgtggtta agtgagatag
      181 aaccgtttag aattggctct gcgattcgtg gcggtatacc aatttgttat ccgtggttcg
      241 gttcaataaa agagcctgcc cacggcacag ctcgcattca agaatggcgt ttagttgagc
      301 atacttgttc tgatgaaaat gtcggtttgg tatttgcctt agagaataaa gcgaaaatgg
      361 aaatgatgtt aggcgaaact tgtgagttat attttaccca tttagatcca gaaccagcac
      421 aactggcatt gcactcttat tttaatattg gtgatattga aaaagtggaa gtgcaaggct
      481 tgccaactcg ctgttttgat aagctaaccg atcaagaagt tgaagtgcca tcacctcgca
      541 agataagtga aaatgtggat tgtatttatc cggcacaagc ggtgaatttt attcaagatt
      601 ttgcaaatca gcgcaccatt aaagttgagc atattaatgc gaccgaaacc gtactttgga
      661 atccttggca taataccgtt agtgcgatga cagaaacggc gtatcaaaat atggtatgtg
      721 tggaaaccgc tcggataaat actctacttc aacaaaatga aacgctagga gtgagggttt
      781 tagtgcgata gtgtttaatg agagcaagca gctgaattag taatattgtt tacaaattt
//
LOCUS       DANMBQ010000276          826 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.282, whole genome shotgun sequence.
ACCESSION   DANMBQ010000276 DANMBQ010000000
VERSION     DANMBQ010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.282"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..553
                     /locus_tag="PXE92_002761"
     CDS             <1..553
                     /locus_tag="PXE92_002761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HDL5761933.1"
                     /translation="LEDNESNLPLLVQTYIKEGEDAEYHKRYKCKIRKPWYKVPSVYS
                     TNIGMLKRSHEAPKLILNKLGAYTTDTAYRIKSNKFQDEILVCCFLNPLTMILSELNG
                     RFYGGGVLELVPSEIRNLYIPIIENIDFNIEELNEEVKAGNIENVIRNNGEKILTNLG
                     FSQEDNAMLMSIWKKLKNNRLRR"
     gene            complement(598..>826)
                     /locus_tag="PXE92_002762"
     CDS             complement(598..>826)
                     /locus_tag="PXE92_002762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761934.1"
                     /translation="NFNNPAERLTHDEISDLQKELNQLFSKIEISNERYGVMYRRMFD
                     DKKKKLDDKIKELYNLNELDDIIPSIEDLYS"
BASE COUNT          300 a          100 c          137 g          289 t
ORIGIN      
        1 tttagaagat aatgagagta atcttccttt acttgtacaa acttatataa aagaaggtga
       61 ggatgcggag tatcacaaaa gatataaatg caaaataaga aaaccatggt ataaagttcc
      121 atcggtttat tcaactaaca taggaatgct gaaaagaagt catgaagcac caaaactaat
      181 attgaataaa ttgggggctt atactaccga tactgcgtat cgtataaagt caaataaatt
      241 tcaagatgag attcttgtgt gctgtttcct aaatccatta actatgattt tatctgagtt
      301 aaatggaagg ttttatggtg gaggcgtatt agaattagtt ccttctgaaa ttagaaatct
      361 atatattcca ataattgaga atattgattt taatatagaa gaattaaatg aagaagttaa
      421 agctggaaat atagagaatg tcataagaaa caatggtgaa aaaattttaa caaatttagg
      481 cttttctcaa gaagataatg ccatgttaat gagtatatgg aaaaagctaa aaaataacag
      541 gttaagaaga tagcttgaaa aggttgtgtg gtttatacat cacacaacct tttagaatta
      601 actatataga tcctctatag atggtataat gtcatctaat tcgtttaggt tgtatagttc
      661 ttttatctta tcatctaatt ttttcttctt atcatcaaac attcttctat acataacccc
      721 atatctttca ttagagattt ctatttttga gaaaagttga tttaactctt tttgtaaatc
      781 tgatatttca tcgtgagtta atctttctgc tgggttattg aagttt
//
LOCUS       DANMBQ010000277          805 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.283, whole genome shotgun sequence.
ACCESSION   DANMBQ010000277 DANMBQ010000000
VERSION     DANMBQ010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.283"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..136
                     /locus_tag="PXE92_002763"
     CDS             <1..136
                     /locus_tag="PXE92_002763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
                     /protein_id="HDL5761935.1"
                     /translation="VINILNKSNHIEVVALRVNVDNPAYIESYELLEKLGVQIVDIRE
                     "
     gene            138..>805
                     /locus_tag="PXE92_002764"
     CDS             138..>805
                     /locus_tag="PXE92_002764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL5761936.1"
                     /translation="MKKYLISLEKDVKRRELFFSQPNTEDFEVFSAINTMSSDWEALN
                     NHFDLALFEQRYGRKTTKGEVGCTLSHLAVYQKIAEDSTIAEDDYCLVCEDDALFADD
                     FQKHLDALLAQNLKVDIILVGQSKIPTFNDSELELNYPSTFGFLQKNIPNSQYKYAYS
                     YLNYFAGTVAYLIKKSTACQFLAQCAGKNPYWLADDFILFEKNFKFDVLIVRPLMAIE
                     NPVL"
BASE COUNT          269 a          115 c          155 g          266 t
ORIGIN      
        1 ggtgatcaat attttaaata aaagtaacca tattgaagtg gtagcattaa gagtgaatgt
       61 agataatcct gcttatattg agagctatga attgcttgaa aaattaggcg ttcagattgt
      121 tgatattaga gaataaaatg aagaaatatt taatttcatt agaaaaagat gtaaaaagac
      181 gagagctatt ttttagccag cctaatacgg aagattttga ggtgttcagt gccattaata
      241 caatgagtag tgattgggag gcattaaata accattttga tttggctctg tttgaacagc
      301 gatatgggcg taaaaccact aagggcgaag taggttgtac tttaagccat ttagccgttt
      361 accaaaaaat tgccgaagat agcactattg cggaagatga ttactgccta gtctgtgaag
      421 atgatgcctt atttgccgat gatttccaaa aacatcttga tgctttatta gcacaaaatt
      481 taaaagtcga tattatttta gttgggcagt cgaaaattcc aacttttaac gatagcgaat
      541 tagagcttaa ttacccatca acctttggct ttttgcaaaa aaatattccg aatagccaat
      601 ataaatatgc ttattcttac ctgaattatt ttgctggtac ggttgcatat ttaattaaaa
      661 aatcgaccgc ttgtcagttt ttagcacaat gtgccggaaa aaatccatac tggcttgccg
      721 atgattttat tttatttgaa aagaatttca aatttgatgt gttaattgtc cgcccgttaa
      781 tggcgataga aaatcctgtt ctaat
//
LOCUS       DANMBQ010000278          775 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.284, whole genome shotgun sequence.
ACCESSION   DANMBQ010000278 DANMBQ010000000
VERSION     DANMBQ010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.284"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(20..304)
                     /locus_tag="PXE92_002765"
     CDS             complement(20..304)
                     /locus_tag="PXE92_002765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010128390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761937.1"
                     /translation="MANITLSHITPKHFFETVRLLKMQEHRIYIGVDSIEVRFKQKRF
                     ESKKETDKRLEQLEHFMLFLQEIINSDIPIDLDEFIYTYHRSVRRGFYRR"
     gene            complement(322..483)
                     /locus_tag="PXE92_002766"
     CDS             complement(322..483)
                     /locus_tag="PXE92_002766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HDL5761938.1"
                     /translation="MEKIENSSNLVLKLSLENQMLILESLEHPKEPNLVMLEALKKYS
                     LYVAKTSNK"
BASE COUNT          249 a          132 c          117 g          277 t
ORIGIN      
        1 ccactcctct ttcacatcac taacgtcgat aaaaacctct ccttactgac ctgtgatagg
       61 tgtatataaa ctcatctaaa tctataggaa tatctgaatt aatgatttct tgtagaaaga
      121 gcataaaatg ctctaactgt tctagtctct tatctgtttc cttttttgac tcaaaacgct
      181 tttgcttaaa acgaacttct atcgaatcta caccgatgta aattcgatgt tcctgcattt
      241 tgagtagtcg gacagtttca aaaaaatgtt taggggtgat gtgagaaagg gttatatttg
      301 ccatagttta gcttgaaaac gctatttatt acttgtttta gcaacataca aagaatactt
      361 ttttaaagcc tctagcatta ctaaattagg ctctttagga tgttctaagc tctcaagaat
      421 tagcatttga ttttcaagag aaagctttag aacaagattt gaactattct ctattttttc
      481 cattttaatt atctcattag atgactttcg cataacaaca ggttatgtgt aaattctcgt
      541 gcagtgggac aagcccgatt gtactgcact cgaattgtaa cataacctgt aggacattat
      601 gcgaaaatta ataatataag tttttcatca atcggcggta ttattgaata cgccatcaca
      661 tctatgtaac agcattaatc tataagttat tatgtaaata cactcatttt gtaacaaata
      721 cttttcattt tatggtaagt tatgataacc tttagcctta aaagttaaat aagga
//
LOCUS       DANMBQ010000279          750 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.285, whole genome shotgun sequence.
ACCESSION   DANMBQ010000279 DANMBQ010000000
VERSION     DANMBQ010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 750)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.285"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            88..>750
                     /locus_tag="PXE92_002767"
     CDS             88..>750
                     /locus_tag="PXE92_002767"
                     /inference="COORDINATES: protein motif:HMM:NF012920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5761939.1"
                     /translation="MNELRLLRQKKLKRLIDEVSEGNIADFARKIGKEPSYVARMLYP
                     SDKAGAKPIGEKMALHICHKFVLPLDWFNRDDDGEFIQINNGEEDNIILSVLNIQASA
                     GIGAKNGDVMEVIREIKFNPEQFYNLFRGITPEHIELISVKGDSMEPTFSHGDLLFVD
                     VTIQEYDGDGVYVFTCDDYIFVKRIQKTGRHFTILSDNDRYKPWQLDQEIYIHGKVKV
                     HQS"
BASE COUNT          265 a          110 c          150 g          225 t
ORIGIN      
        1 taaaaataat atcaatacca tttggtttgt ttacctttta gtaaataaga gtacaattac
       61 taaaaagtaa tccttagagg aggttatatg aatgagttga gacttcttag acaaaaaaaa
      121 ttgaaacgcc taattgatga agtgagtgag ggaaatattg ctgactttgc aagaaaaata
      181 ggtaaagagc ctagctatgt agcaagaatg ttgtatccgt ccgataaagc tggagctaag
      241 cctattggtg aaaaaatggc actccatatt tgccataaat ttgtgctacc ccttgattgg
      301 tttaatcgag atgatgacgg cgaatttatt caaatcaaca atggtgagga agataatatc
      361 atcttaagtg tattgaatat tcaagcatcg gccggtatag gagcaaaaaa cggtgatgtg
      421 atggaagtca ttagagaaat taaattcaat ccagaacaat tttataacct atttagaggt
      481 attacgcctg aacatatcga gctgatcagt gtaaaaggcg attctatgga gccaacattc
      541 tcacacggtg atttgctttt tgttgatgta actatccaag aatacgatgg cgatggtgtg
      601 tatgttttta cttgcgatga ctatattttt gtaaaaagga ttcaaaaaac aggcagacac
      661 tttactattt tatctgataa tgaccgctat aaaccttggc aattagatca agaaatttat
      721 attcacggca aagttaaagt ccaccaaagc
//
LOCUS       DANMBQ010000280          736 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.286, whole genome shotgun sequence.
ACCESSION   DANMBQ010000280 DANMBQ010000000
VERSION     DANMBQ010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.286"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>736
                     /locus_tag="PXE92_002768"
     CDS             <1..>736
                     /locus_tag="PXE92_002768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5761940.1"
                     /translation="YQKKCIANYFAFDQKIQLNTQTNQTLEAIAQAIFKSWFVDFDPV
                     RAKAAALSEGKSEHEANLAAMSVICGKDTSELNDTEYKALWQIAEAFPSEFGDEGLPI
                     GWKFNQADNLFDVGIGKTPPRKESEWFSDNANDTEWISIKDMGNQGLFITESSEYLKA
                     EAVDTFNIKRIPENTVILSFKLTVGRVSITTKETTTNEAIAHFKIPSSSNLSSEFLYC
                     YLKNFDFNNLGSTSSIATAVNSKMIK"
BASE COUNT          270 a          137 c          136 g          193 t
ORIGIN      
        1 aatatcaaaa aaaatgtatt gctaattatt ttgcctttga ccaaaaaatc caactcaaca
       61 cccaaaccaa ccaaacccta gaagccattg cacaggcaat cttcaaaagc tggtttgtgg
      121 attttgaccc tgtgcgcgcc aaagccgccg ccctaagcga aggcaaaagc gaacacgaag
      181 ccaaccttgc ggcaatgtcg gtgatttgtg gtaaagacac cagcgagtta aacgacaccg
      241 aatacaaagc gctttggcaa atcgccgaag ccttcccaag tgagtttgga gatgaagggt
      301 tacctattgg ctggaaattc aatcaagcag acaatttatt tgatgttggt attgggaaaa
      361 ccccaccaag aaaagagagt gaatggtttt ctgataatgc aaatgataca gaatggattt
      421 ctattaaaga tatgggaaat cagggattat ttatcacaga aagtagcgaa tatctaaaag
      481 ctgaagccgt agatacattt aatattaaaa gaattcctga aaatactgta attttgagtt
      541 ttaaattaac cgttggtaga gtttcaatta cgacaaaaga aacaactact aacgaagcta
      601 ttgctcattt taaaattcct agctcatcaa atctaagctc agagttttta tactgctact
      661 taaaaaattt tgattttaat aatctaggaa gtacatcatc aatcgcaacg gcagtcaatt
      721 caaaaatgat aaaaga
//
LOCUS       DANMBQ010000281          721 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.287, whole genome shotgun sequence.
ACCESSION   DANMBQ010000281 DANMBQ010000000
VERSION     DANMBQ010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.287"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            61..576
                     /locus_tag="PXE92_002769"
     CDS             61..576
                     /locus_tag="PXE92_002769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5761941.1"
                     /translation="MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNT
                     GARREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQG
                     DVLQMLGSRQGNDMGGQQGGWGNSAPAGNSYNQGNSNYGYNQTQSAAPQSKPAPQPEP
                     AMNNFDDDIPF"
BASE COUNT          239 a          147 c          156 g          179 t
ORIGIN      
        1 ttggattttc aggtagaata cttagcaaat tttagtttaa tttatcaaac agaggatttt
       61 atggctggta tcaataaagt aattattgtc ggtaatttag gtaacgaccc tgaaatgcgt
      121 acaatgccaa atggcgaagc ggttgcaaat attagtgtgg caacctcaga aagctggacg
      181 gataaaaaca ccggtgcacg ccgtgaagta accgagtggc atcgtattgt attctaccgc
      241 cgtcaagcag aagtatgcgg gcaatattta cgtaaaggct ctcaagttta cgtagaagga
      301 cgtttaaaaa cccgtaaatg gcaagaccaa aacgggcaag atcgttacac caccgaaatt
      361 caaggcgatg tgctacaaat gctcggcagc cgtcaaggta atgatatggg cggtcagcaa
      421 ggcggttggg gaaattctgc tcctgcgggt aatagctaca atcaaggcaa cagcaattat
      481 ggttacaacc aaacccaaag tgctgcaccg caatctaaac cggcaccaca gcctgagccg
      541 gcaatgaaca attttgatga tgatattccg ttctaatcaa agtattgact taagtagctc
      601 atgggttcca tacaccgcat ttcgatgaaa taaaaagcta ctcatataaa gcgcccctac
      661 cttactcaaa ataataggga acacttccaa gtaataagtg ttccctatta attaatataa
      721 t
//
LOCUS       DANMBQ010000282          706 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.288, whole genome shotgun sequence.
ACCESSION   DANMBQ010000282 DANMBQ010000000
VERSION     DANMBQ010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.288"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..588)
                     /locus_tag="PXE92_002770"
     CDS             complement(<1..588)
                     /locus_tag="PXE92_002770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5761942.1"
                     /translation="MNKKISVVMSTYNEPVEWVEKSIRSILNQTYDNIEVIVICDNPD
                     NKGIVDLLNLIKEGDNRVVLHFNERNKGLIYSLNKAINLSSGEYIARMDADDISLPTR
                     LSEQILYLEENHLDLCGCNALLFSEHGNLGLTNKLNSHEALEKLMVAGDIGIIHPTFL
                     ARRKVFVESGGYNPLALHAEDMEFIAHILSMGFRLG"
BASE COUNT          259 a          137 c           76 g          234 t
ORIGIN      
        1 ccctaatcta aatcccattg ataaaatatg ggcaataaat tccatatctt ccgcatgtaa
       61 agctaaggga ttataccctc cagattcaac aaatactttt ctccttgcta aaaaagtagg
      121 gtgaattatt ccaatatcac cagccaccat aagcttttct aaagcctcat gactattcaa
      181 cttatttgta agaccaaggt tgccatgttc agaaaaaagc aaagcattac aaccgcataa
      241 gtctaaatgg ttttcttcta aatataaaat ttgctctgac aatctagtag gtaaagatat
      301 atcatcagca tccattctcg ctatatattc accagaggat aagtttatag ctttatttaa
      361 tgaatatatc aaccccttat ttctttcatt aaaatgtaaa acaactctat tatctccctc
      421 ctttattaaa tttaataaat caactatacc cttattatca ggattatcac atataacaat
      481 tacttctata ttatcatatg tctgattcaa tattgatcta attgatttct caacccattc
      541 cacaggttca ttatatgtac tcattacaac agaaattttc ttattcataa taaaggctcc
      601 agcctataac aggctttaaa ataaaggaga ataaataaaa ttatatggaa aaccatcacc
      661 tatcacatag gatttttgcg aaaaatgaat caattgtgaa tcaata
//
LOCUS       DANMBQ010000283          699 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.289, whole genome shotgun sequence.
ACCESSION   DANMBQ010000283 DANMBQ010000000
VERSION     DANMBQ010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.289"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..>699)
                     /locus_tag="PXE92_002771"
     CDS             complement(<1..>699)
                     /locus_tag="PXE92_002771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AlwI family type II restriction endonuclease"
                     /protein_id="HDL5761943.1"
                     /translation="TISEAFKLDISKVYVALSKDLGITIKSPEQAATYVNDERYRRFN
                     TLIDKKFNDSVLIELLNCFEKRDDKRIEELVTDEAAIPTIFEYILGIIWYKVSERQGN
                     ILDFMKLSLEANLLPKTHAAGGYADIIYEYEACTSYPKHSLLLEATLADGNNQRRMEM
                     EPVSRHLGDYRIRFNNPFDYSLFVSTYLDKNVISDFRYRKIIPYTRDEETITGMKIIS
                     MDTDSLKKIIENKV"
BASE COUNT          209 a          133 c           91 g          266 t
ORIGIN      
        1 ttaaccttat tctcaattat tttcttaaga gaatctgtgt ccattgaaat aatcttcatt
       61 cctgtaatgg tttcttcatc tctggtgtat ggaattatct ttctatatct aaaatctgag
      121 attacatttt tatctaagta tgtgctaaca aataggctgt aatcaaacgg attattaaat
      181 ctaatcctat aatcgcctaa atgtcttgaa acaggctcca tttccattct tctttgatta
      241 tttccatctg caagggttgc ttcaagcaat aatgaatgtt tcggataaga ggtgcacgct
      301 tcatattcat atataatgtc tgcgtaacct ccagctgcgt gggtcttcgg caataaattg
      361 gcttctaatg ataacttcat gaaatccaaa atatttcctt gtctttcgct cactttgtac
      421 catataattc ccaaaatata ttcaaaaata gtaggtattg cagcctcatc tgtaacaagt
      481 tcttcaatcc ttttatcatc acgtttctca aaacaattta gtaactctat aagcacagaa
      541 tcgttaaatt tcttatcgat caaagtatta aatcttctgt atcgttcatc atttacataa
      601 gttgcagctt gttccggact cttaattgta attcctaaat ctttacttaa agctacatat
      661 actttgctaa tatctaactt gaatgcttct gatatagtt
//
LOCUS       DANMBQ010000284          694 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.290, whole genome shotgun sequence.
ACCESSION   DANMBQ010000284 DANMBQ010000000
VERSION     DANMBQ010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 694)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.290"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            354..>694
                     /locus_tag="PXE92_002772"
     CDS             354..>694
                     /locus_tag="PXE92_002772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HDL5761944.1"
                     /translation="MEGEYKLKADVTIYHDTPYTKVLFGSTYIEILDDDQYYFSILEK
                     RRWKLENLPDELVDVLKEYNLFVKTYIHEYENTELEKNIYLIESLIDSKSHKTPIDIQ
                     KQLSSTKILLLG"
BASE COUNT          237 a          104 c          113 g          240 t
ORIGIN      
        1 tcaaataaaa agtgagctaa aaaagatttt aactcacttt catttcgtag gctcaaatta
       61 gacctactac gccgatataa aaagttggtc tttttatatc aaagctaagc tcttaacaac
      121 gagtagtaga ttctctaata tgtttagctg taactttcat tggcttttgt tgcgctgtag
      181 tgtttttcat attgttctcc agattttgtg agtaattagt aagacctttt cttttgaaaa
      241 ggaccgagct ttcaaagtgg tctgattacc tattgagcaa tcagcttgct tttcaagccc
      301 catgtcatta tatcataacc attgttttta gtcaatacca ttttggggaa tgcatggaag
      361 gcgagtacaa attgaaggct gatgtcacga tctatcatga tacgccttat acaaaagttc
      421 tctttggaag tacatatatt gagattttag acgatgacca gtattacttt tcgattttag
      481 aaaaacgaag atggaagtta gaaaatttac ctgatgaatt agttgatgta ctaaaagagt
      541 ataatctttt tgttaaaacg tatattcatg aatatgagaa tacagaatta gaaaaaaata
      601 tatacttaat tgagagttta attgattcaa aatctcataa aacaccaata gatattcaaa
      661 aacaactatc gtctactaaa attctcctat tagg
//
LOCUS       DANMBQ010000285          683 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.291, whole genome shotgun sequence.
ACCESSION   DANMBQ010000285 DANMBQ010000000
VERSION     DANMBQ010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 683)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.291"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..624
                     /locus_tag="PXE92_002773"
     CDS             <1..624
                     /locus_tag="PXE92_002773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL5761945.1"
                     /translation="NTVLNTLQCDYVLFSSEDNYQVIINLKKADYPKNEANFITMTLN
                     KKFGDAKFSGANHYLRCASFFNKKSTNNNEKSVLVDFTNTKTEEDNKCYFDNLLSSYK
                     NNNVKLEPLDIKIIDELGDDKAVIAQKEIQAEIALCKRIFKQLDWSAVDFRIVKRLYR
                     KGFSENEIAVALVRFTDFEDRHCDSHDYLTRTITKAIQNYQQCSKAC"
BASE COUNT          276 a          102 c          102 g          203 t
ORIGIN      
        1 aacacagttt taaacacact acaatgcgat tatgtgctgt tttcttctga agacaactac
       61 caagtcatca tcaatctaaa aaaagctgat taccccaaaa atgaagcaaa tttcattaca
      121 atgactttaa acaagaaatt tggtgatgca aaattttccg gtgcaaacca ttacttaaga
      181 tgtgccagct tcttcaacaa gaaaagcaca aacaacaatg aaaaatcagt tttagttgat
      241 tttacaaaca caaagacaga agaagacaat aaatgttatt ttgataactt attatctagt
      301 tataaaaata acaatgtaaa acttgagcct ttagacatca aaattattga tgagcttgga
      361 gatgataaag cagttattgc acaaaaagaa attcaagcag aaattgcttt gtgtaaacgt
      421 atattcaaac aattagattg gtctgctgtt gattttagaa ttgttaagcg tctgtacagg
      481 aaaggatttt cagaaaatga aattgctgtt gcacttgtca gatttactga ttttgaagac
      541 agacattgtg attcacatga ttatttgaca agaacaatca caaaagccat tcaaaactat
      601 caacaatgct caaaagcttg ttagatgtta taaggaaagt taaaaatcaa caaaagattt
      661 gacaaattta tataaaatcc tta
//
LOCUS       DANMBQ010000286          675 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.292, whole genome shotgun sequence.
ACCESSION   DANMBQ010000286 DANMBQ010000000
VERSION     DANMBQ010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.292"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>675
                     /locus_tag="PXE92_002774"
     CDS             <1..>675
                     /locus_tag="PXE92_002774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5761946.1"
                     /translation="IKGYSNIQGNLVTAIPNFLEKVNNDFAISARNRDLYSHYLPYQG
                     IDDWENSNFNFRTLNGVYYDDNLTSTELLRKFMIQRDYNTLYALSSARTGNADSLAKN
                     YHLVVAKMSYENLKKELSKKPDSTFNKLKKLYETNGEFLNEYILDNFRGNPLELLTVP
                     ALKESLENQESFPSRLYQKFNIFNQAIAQTTSNITKEEIDDLEKTVENFNNFKNSIDY
                     DSDAWI"
BASE COUNT          254 a          110 c          106 g          205 t
ORIGIN      
        1 tcattaaagg ttatagcaat attcaaggta acttagtaac agccattcct aacttcctgg
       61 agaaagttaa taatgatttt gctataagtg ctagaaatag agacttatat agtcactacc
      121 ttccttatca gggtattgat gattgggaga attctaattt taactttcga acactaaatg
      181 gagtttatta tgatgataat ctaacttcaa cagaactcct gcgaaaattt atgattcaaa
      241 gagattataa cactctttat gctctaagtt ctgctcgcac aggaaatgct gatagtctgg
      301 ctaaaaatta ccatcttgta gttgcgaaaa tgtcctatga aaacctgaaa aaagaattat
      361 ccaagaaacc cgactctaca tttaataaac tgaaaaagct gtatgaaacc aatggtgaat
      421 tcttaaatga atatatttta gacaatttcc gaggaaatcc acttgaatta ttaacagtac
      481 ctgcgcttaa agaaagttta gaaaaccaag agtcattccc tagcaggctg tatcagaaat
      541 ttaatatttt caaccaggct attgcacaga ccacatcaaa cattactaaa gaagaaattg
      601 atgatttaga aaaaactgta gaaaatttca ataacttcaa aaattcaatt gattatgata
      661 gcgatgcgtg gatct
//
LOCUS       DANMBQ010000287          671 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.293, whole genome shotgun sequence.
ACCESSION   DANMBQ010000287 DANMBQ010000000
VERSION     DANMBQ010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 671)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.293"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            41..>671
                     /locus_tag="PXE92_002775"
     CDS             41..>671
                     /locus_tag="PXE92_002775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5761947.1"
                     /translation="MPNFSFTHLYKKHTKELPTVTLLSALIGLSQVSYANPLPLGNTT
                     GTNNLAVGEGSFALGTGSQAIGKNAIATGGNISPQEFNVELENFRDLVNQIEELRTQI
                     AEQEKQGSVNQQLQDALKSQIAQYDTILERVREKQAQQAILANSVISMRKELVNRRNQ
                     LTELENNFNTSFLTGKNKQEAYQKFSTVIESLDWDKLSKTNGVDQLATDL"
BASE COUNT          254 a          115 c          119 g          183 t
ORIGIN      
        1 taagaatgaa aagtaaaagt tttaatgagg aaattttgat atgccaaact ttagtttcac
       61 ccatctgtat aaaaaacaca caaaagagct ccctactgtt accttgctta gcgctctgat
      121 agggcttagc caagtctctt atgccaatcc acttccttta ggcaacacca ctggcaccaa
      181 taaccttgct gtaggtgaag gtagttttgc gttaggcaca ggttctcaag caatcggcaa
      241 gaatgccatt gcaaccggtg gtaatatctc cccccaggaa ttcaatgtgg agttagaaaa
      301 cttccgtgat ttagttaatc aaattgaaga gttacgtact caaattgctg aacaagaaaa
      361 acaaggctct gttaatcaac aattacaaga tgctttaaag agtcagattg ctcaatatga
      421 cactatttta gagcgtgtac gtgaaaaaca agcacaacaa gcaatattag ccaatagtgt
      481 tatatcaatg cggaaagaat tagttaatag aagaaatcag ttaacagaat tggaaaataa
      541 ttttaatact agttttttaa caggaaaaaa taaacaagaa gcatatcaaa aattttctac
      601 agtaatagaa tcattagact gggataaatt atcaaaaact aatggggtag atcaattagc
      661 aacagactta a
//
LOCUS       DANMBQ010000288          670 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.294, whole genome shotgun sequence.
ACCESSION   DANMBQ010000288 DANMBQ010000000
VERSION     DANMBQ010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.294"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>670
                     /locus_tag="PXE92_002776"
     CDS             <1..>670
                     /locus_tag="PXE92_002776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDL5761948.1"
                     /translation="NELIKSIKGDLLYLDPPYNSRQYCDAYHLLENVARWEKPKVYGV
                     ARKMDRTSLKSDYCMIAATKAFEELIENADAKYILLSYNNMSDKGNDRSNAKISDEDI
                     MKILSKKGKVIVFESDYKSFSTGKSDIQDNKERLFLCEVFSKEKKKMNISCPFNYIGG
                     KFKLLEQLQPLFNEKEVFLDLFAGGGNVGINSSSSKVIFNDTNENLIDLIEFIKDTDT
                     DALLK"
BASE COUNT          264 a           65 c          120 g          221 t
ORIGIN      
        1 aatgaattaa ttaaaagtat taaaggagat ttattgtatt tagaccctcc atataattca
       61 agacaatatt gtgatgcata tcatttactt gaaaatgtgg cacgatggga aaaacctaaa
      121 gtttatggtg ttgcaagaaa gatggataga acttcgctta aaagtgatta ttgtatgatt
      181 gcagctacaa aagcatttga ggagcttatt gaaaatgctg atgcaaaata tattttgctt
      241 tcatataaca atatgtcaga caagggaaat gatagatcca atgcgaaaat atcggatgaa
      301 gatattatga aaattcttag caaaaaggga aaagtaattg tatttgaatc ggattataag
      361 agtttttcaa ctgggaaatc agatatacaa gataataaag aaagattatt tttatgcgaa
      421 gtatttagca aagaaaaaaa gaaaatgaat atatcttgcc cttttaatta tattggcgga
      481 aaatttaaac tattggaaca attacaacct ttatttaatg aaaaggaagt atttttagat
      541 ttatttgctg gtggagggaa tgttgggata aattcctctt cttcaaaagt tatttttaat
      601 gatacgaatg aaaatttgat agatttaatt gaatttataa aagacactga tactgatgct
      661 ttattaaaac
//
LOCUS       DANMBQ010000289          664 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.295, whole genome shotgun sequence.
ACCESSION   DANMBQ010000289 DANMBQ010000000
VERSION     DANMBQ010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 664)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.295"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..421
                     /locus_tag="PXE92_002777"
     CDS             <1..421
                     /locus_tag="PXE92_002777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL5761949.1"
                     /translation="EQAKQSCLNGATEAYEFADDMDDHESYEAYDLPYAVYGVVLGRA
                     KSDIRPLTDEERESELFGEAEQVIEPPTLVENNGWISVKDRLPEIRKEVLITNNFIMI
                     AQFNGESWFKPGGFLGIQPVYGVTHWQPLPEPPKEEK"
     gene            418..621
                     /locus_tag="PXE92_002778"
     CDS             418..621
                     /locus_tag="PXE92_002778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761950.1"
                     /translation="MTDTERLDFIAQRKLDVRYSDLVDEFIIASYTKPHEQYFHWARN
                     ADLRTAIDEAMKEMRGLNNATTN"
BASE COUNT          227 a          130 c          147 g          160 t
ORIGIN      
        1 agagcaagca aaacaaagct gtttaaatgg tgctactgaa gcctatgagt ttgcggatga
       61 catggatgat cacgaaagct atgaagccta tgatttaccc tatgcagttt atggtgttgt
      121 tttaggtaga gcaaaatcag atatccgccc actaaccgat gaagaaagag aatcagagtt
      181 atttggggaa gctgaacaag ttattgaacc accaacactt gtagaaaaca acggctggat
      241 ttcagtcaaa gacagattgc cagaaatccg caaagaagtc ttgataacaa acaattttat
      301 tatgattgct caattcaatg gcgagagctg gttcaagccg ggtggattct taggtattca
      361 gcctgtctat ggtgttaccc actggcaacc acttcccgaa ccaccaaagg aggaaaaatg
      421 accgacaccg aacgcttaga ctttatcgcc caacgcaaat tagatgtccg atattctgat
      481 ttggtggacg aatttattat tgctagctat accaaaccgc acgagcagta ttttcattgg
      541 gcaagaaatg ccgatttacg cacggcgatt gatgaagcaa tgaaagaaat gagaggacta
      601 aacaatgcaa caactaatta aaaacatcga acaatgggcg gaagaccgca atttaattaa
      661 cggc
//
LOCUS       DANMBQ010000290          662 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.296, whole genome shotgun sequence.
ACCESSION   DANMBQ010000290 DANMBQ010000000
VERSION     DANMBQ010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.296"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(120..>662)
                     /locus_tag="PXE92_002779"
     CDS             complement(120..>662)
                     /locus_tag="PXE92_002779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761951.1"
                     /translation="LNVNNLAAISANLGKVTAGTITGTTITGNTISGGSINGTTISGT
                     TISGGTIKGARLEGATGKFTGELEVSQLIGGGVIEQVTGKLKYSHRNRIYEGQEHGEN
                     SSSPIYRHEYIYKATVTINAAPTRRYIEIIGSESFILEANQSITKTIEKSLNRNASGS
                     SLDFIVLAYSISTAKYISIS"
BASE COUNT          182 a          134 c          115 g          231 t
ORIGIN      
        1 ttttcctttt atcgatagtt gaaataaaaa caatcgcctg aattgacctg caagcggttg
       61 gttttggata tttaaaaaag ctgtggctat ccgcactcag tactacattg aggcgataac
      121 taactgatag agatatattt agccgtcgaa atggaatagg ctaaaacaat aaaatctaaa
      181 gagctaccac ttgcatttct atttaatgat ttctctattg tttttgtgat tgattgattt
      241 gcttctaaaa tgaatgactc acttccgatg atttcaatat acctccttgt cggcgctgca
      301 tttatggtga cagttgcttt atagatatat tcgtgtctat aaattggaga ggaggagttt
      361 tctccatgtt cttgcccctc ataaatgcga ttacgatgtg aatattttaa tttgcctgta
      421 acctgctcta taacacctcc ccctattaat tgagatactt caagttcgcc ggtaaatttg
      481 ccagtagccc cctccaatct tgcacccttt attgtgccgc cagagatagt tgtaccgcta
      541 attgttgtac cattaatact tccgccacta attgtattac cagtaattgt cgtacctgta
      601 attgtaccag cagttacctt accaagattt gccgatattg ccgctaaatt gtttacattt
      661 ag
//
LOCUS       DANMBQ010000291          658 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.297, whole genome shotgun sequence.
ACCESSION   DANMBQ010000291 DANMBQ010000000
VERSION     DANMBQ010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.297"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..296
                     /locus_tag="PXE92_002780"
     CDS             <1..296
                     /locus_tag="PXE92_002780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761952.1"
                     /translation="DTRYNKNGQGAVSERNIIDAKNRFKASHPYAKIISCVRGSETYV
                     TRPAKANATTKSVKEKQSQPQESSSLSSMLLGAAVTAGVGFVANKWFSKKDNT"
     gene            324..>658
                     /locus_tag="PXE92_002781"
     CDS             324..>658
                     /locus_tag="PXE92_002781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761953.1"
                     /translation="MAGLLPPYFKKKNSDHYKDAVKQFGKEQVDEVIAQCDELESWVK
                     EMPTKQLIMYVGCFHTFNKLSQSKAYVQENFPNVLENPFLFQTLSAASHNELKINRGY
                     KFKEKMLDE"
BASE COUNT          245 a          106 c          119 g          188 t
ORIGIN      
        1 cagataccag atataacaag aatgggcaag gtgctgtttc tgaaagaaat attatagatg
       61 ctaaaaatcg ttttaaagcg agccatccat acgcaaaaat tatttcttgt gttagagggt
      121 ctgagacata tgtaacacgt ccagcaaaag ctaatgctac aacaaaatct gtcaaggaaa
      181 agcaatctca accacaagaa agttcatcgc tcagttcaat gttacttggt gcggctgtaa
      241 ctgctggggt tggttttgta gccaataaat ggtttagcaa aaaagataac acttaattta
      301 tctctaacca atgtggagta aaaatggctg gattattacc accttatttc aaaaagaaaa
      361 atagtgatca ctataaagat gctgtaaaac aatttgggaa agaacaagtt gatgaggtta
      421 tagcacagtg tgatgaactt gaatcttggg taaaagaaat gccaacaaaa caacttatta
      481 tgtatgttgg ttgtttccat acttttaaca aattatctca atctaaagct tatgttcaag
      541 agaactttcc aaacgtactg gaaaacccgt ttcttttcca aacactttcg gcagcgtctc
      601 ataatgaact taaaataaat cgaggatata aattcaaaga aaaaatgctt gatgaatt
//
LOCUS       DANMBQ010000292          651 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.298, whole genome shotgun sequence.
ACCESSION   DANMBQ010000292 DANMBQ010000000
VERSION     DANMBQ010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 651)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.298"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>651
                     /locus_tag="PXE92_002782"
     CDS             <1..>651
                     /locus_tag="PXE92_002782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL5761954.1"
                     /translation="ELLSLEGFKMKVVHNGLEGLNELESNQYDLVLLDVMMPVLSGVK
                     TLKRIRQKYSLPVLMLSARDDQIDRILGLELGADDYVPKPFNNRELVARMKAILRRTT
                     SRPASTDHSEQNYTENISKSLQFAGVELHSGRQQAYYQGCDLDLTGTEFALLQMLMRN
                     SGEILSRELLSLKILGKNLTPYDRAIDMHISNLRKKLPEREDGLPWFKTLRGRGYL"
BASE COUNT          224 a           95 c          130 g          202 t
ORIGIN      
        1 ctgaattact ttcattagaa ggatttaaaa tgaaagttgt gcataatggt ttagaaggct
       61 taaatgagtt agagtctaat caatatgatt tagtattact agatgtgatg atgccggtat
      121 taagtggcgt gaaaacatta aaacgtatac gacaaaaata ctcattaccc gttttaatgt
      181 taagtgcaag agatgatcaa attgatagaa tcttaggttt agaattaggg gctgacgatt
      241 atgtaccgaa accttttaat aatcgtgaac tagtcgctag aatgaaagcg atacttcgaa
      301 gaacaacctc tcgcccagct tcaacagacc attctgaaca gaattatact gaaaacatct
      361 ctaaatcatt acaatttgcc ggagttgaat tacattcagg acgtcagcag gcttattatc
      421 aaggatgtga tcttgattta acggggactg aatttgcatt attacaaatg ttaatgcgaa
      481 actcagggga gattttgtcc agagaattat tgagtttaaa aattttaggg aaaaatttaa
      541 cgccttatga tcgtgcaatt gatatgcata tttctaatct tcgtaaaaaa ttacccgaac
      601 gggaagatgg attaccttgg tttaaaacct taagaggtcg gggttactta t
//
LOCUS       DANMBQ010000293          647 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.299, whole genome shotgun sequence.
ACCESSION   DANMBQ010000293 DANMBQ010000000
VERSION     DANMBQ010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.299"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            14..640
                     /locus_tag="PXE92_002783"
     CDS             14..640
                     /locus_tag="PXE92_002783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL5761955.1"
                     /translation="MTKIKFYGNLKKFGSEFSLEVKDTAEAIRALCTQISGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVIKGAKSGGVFNFVLGAALIGAA
                     FFTGGASIAAWGAGAKMMGMLGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSNL
                     NNLVTQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK"
BASE COUNT          201 a          116 c          158 g          172 t
ORIGIN      
        1 gtaatggtga gtcatgacta aaattaaatt ttacggcaat ttaaaaaaat ttggtagtga
       61 atttagctta gaagttaaag atactgccga agctatccga gccttatgta cacagattag
      121 cggattgcgt gaggcattac gagacggtgt ttataaagtc cgtatcggca aacagtattt
      181 agacccgtca gcccttgaaa aagggctttt ttattgtctg aagaaagggc aaaccattca
      241 ttttacccct gttatcaaag gagcgaaaag cggtggcgtg tttaattttg ttttaggtgc
      301 agccttgatc ggagccgcat tttttactgg cggtgcttct attgcggctt ggggagctgg
      361 agcaaaaatg atgggtatgt taggggcttc gatgttacta ggaggagttt cccaaatgct
      421 caccaaaatg ccaaaagccc ccacaatggg taatgaaaca gaaaaagaaa gctcaacggc
      481 tttttcaaat ttaaataact tggtgactca aggcaaacct gtgccgttgg cttatggctt
      541 aattcggacc ggctcgcttg tgatatcgca gggagttgag acgatcacca ttaaagaaaa
      601 ccaaccggca agcaacaaga aaacaggctt tagaaaataa gggataa
//
LOCUS       DANMBQ010000294          644 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.300, whole genome shotgun sequence.
ACCESSION   DANMBQ010000294 DANMBQ010000000
VERSION     DANMBQ010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.300"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>644
                     /locus_tag="PXE92_002784"
     CDS             <1..>644
                     /locus_tag="PXE92_002784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5761956.1"
                     /translation="EIEQTRAAYDRLKRSGVASQNELRRASEATKQRVRELNAELGKT
                     SFGDKAKGFGRGLMSAGVGIAAGAAMARQPAKNQMEFDRQLAMASNTAFSDRDVKGRI
                     EGKKELLAAVQEAVKVGGGTKEDALLTLDTLIASGTMKAETAMSLLPTLQKGAVATGA
                     SSEDMAKIAISSMQQFGIKEEDIGRALDMAVAAGQAGNFELADMARWLPQQMAAG"
BASE COUNT          184 a          129 c          190 g          141 t
ORIGIN      
        1 gaaattgaac aaactcgtgc agcctatgac cgcttaaaac gctcaggtgt tgcctctcaa
       61 aatgagctac gccgtgcctc agaagccact aagcaacggg tgcgagagct gaatgcagaa
      121 ttgggtaaga caagctttgg ggataaggct aaaggatttg ggcgtggttt gatgagtgcc
      181 ggtgtcggta ttgcagcagg tgctgcaatg gctcgtcagc cagccaagaa ccaaatggag
      241 tttgaccgac agttagcgat ggcatcaaac actgcctttt ccgaccgtga tgttaaaggg
      301 cgtattgagg gcaagaaaga gttattagca gcggtgcaag aggcggttaa ggttgggggt
      361 ggaacaaaag aagatgctct tttaactctt gatacgctaa ttgcctcagg aacgatgaag
      421 gctgaaactg caatgagcct attaccaacc ttgcagaaag gtgctgtagc aacaggtgca
      481 agctccgagg atatggcaaa aattgcgatc tcctcaatgc aacaatttgg gattaaagaa
      541 gaggatattg ggcgggcatt ggatatggca gttgcagccg ggcaagcagg taactttgag
      601 cttgcagata tggctcgctg gctaccacaa caaatggccg cagg
//
LOCUS       DANMBQ010000295          643 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.301, whole genome shotgun sequence.
ACCESSION   DANMBQ010000295 DANMBQ010000000
VERSION     DANMBQ010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.301"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..493
                     /locus_tag="PXE92_002785"
     CDS             <1..493
                     /locus_tag="PXE92_002785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761957.1"
                     /translation="ARPLNTLEVKGLTVVDDSQKPLFSEVNQALYHGLSPIEVVASRV
                     QITRAITTYTKNVTNTDDPSYLDLTTIRTLDYVRKAIQTRQRLRFPRAKNSHRIVAKV
                     RSEILDVLYQLEGEEVIENVEAWKNRLLVVRNQDPTYLDLEIPADVVNGLHVIRNKIT
                     LIL"
     gene            504..>643
                     /locus_tag="PXE92_002786"
     CDS             504..>643
                     /locus_tag="PXE92_002786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761958.1"
                     /translation="MSIVYEGSCVLEVDGVEIEITKLDVKTVTGRKLVKTMNSSGRAR
                     GYS"
BASE COUNT          182 a          127 c          160 g          174 t
ORIGIN      
        1 ggctcgcccg ttaaataccc ttgaagttaa aggcttaacg gtcgtagatg actcgcagaa
       61 accgttattt agcgaagtaa accaagcgtt atatcacggt ttaagcccga ttgaggtggt
      121 ggcaagccgt gtgcagatta cccgtgcgat tactacatac accaaaaacg tgacgaatac
      181 tgatgaccca agctatttgg atttaaccac cattcgtacg cttgactatg tgcgtaaggc
      241 aatccaaacc cgtcagcgtt tgcgtttccc tcgtgcgaaa aactcccacc gtattgtggc
      301 aaaagtacgc tcggagattt tagatgtgct ttatcagctt gagggcgaag aggtaatcga
      361 aaatgtggaa gcgtggaaaa atcgcttatt agtggtgcgt aatcaagacc cgacttactt
      421 ggatttagaa atccctgcgg atgtggttaa tggcttgcac gttattcgta acaaaattac
      481 gttaatttta tagggggtgc tagatgtcaa ttgtttatga aggctcttgc gtgcttgagg
      541 tagatggcgt tgagattgaa attaccaaac ttgatgtaaa aaccgtaacc ggtcgcaagc
      601 tggttaaaac gatgaacagt tccggacgtg caagaggtta ttc
//
LOCUS       DANMBQ010000296          641 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.302, whole genome shotgun sequence.
ACCESSION   DANMBQ010000296 DANMBQ010000000
VERSION     DANMBQ010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.302"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(179..>641)
                     /locus_tag="PXE92_002787"
     CDS             complement(179..>641)
                     /locus_tag="PXE92_002787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761959.1"
                     /translation="GDRNYQLYIDLATGELVSKLGKGLTTRAFDAAVKAFENAFNAKD
                     TAENTAPVESKETEQENKQETTKLVITKPTLKGSEKQIDSANEIINLFIAKIGDTSIP
                     VTATQEQITQAQAMVDNFFAMTNAGKWIEKFKGLNDNSEPKQFWLSVKYGW"
BASE COUNT          145 a          127 c          118 g          251 t
ORIGIN      
        1 ggtatctcaa gattattgtc tgtacgtttg ttggcacatc gtcaccataa gtagcagcga
       61 caatttgccc gataatgcgc ataatttgtg gtgttacttg tgtagtcata ataatctcca
      121 gttatctgtt tgttttagcc gtaagccttt gctcttacgg cttatttgtt atctcaatct
      181 accatccata ttttacggat aaccaaaatt gctttggttc gctattatca tttagacctt
      241 taaatttttc gatccacttt ccagcgtttg tcattgcaaa aaaattatct accattgctt
      301 gagcttgagt aatttgttct tgcgttgctg ttactgggat agaggtatca ccaatcttcg
      361 caataaaaag attgatgatt tcgtttgccg aatcaatttg tttttcagag ccttttaatg
      421 ttggttttgt gattacaagc ttagttgttt cttgtttgtt ctcttgctct gtttctttgc
      481 tttctaccgg cgctgtattt tcagcggtgt ctttagcatt aaaagcgttt tcaaaagctt
      541 ttacggcagc atcaaacgct ctggttgtta atcctttgcc aagtttgctc actaactcgc
      601 ctgtggctag gtcaatgtac aactggtaat tccgatcacc t
//
LOCUS       DANMBQ010000297          611 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.303, whole genome shotgun sequence.
ACCESSION   DANMBQ010000297 DANMBQ010000000
VERSION     DANMBQ010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 611)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.303"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..223
                     /locus_tag="PXE92_002788"
     CDS             <1..223
                     /locus_tag="PXE92_002788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761960.1"
                     /translation="NGIVNEPSVDCFSQEIAQFTGCHIFSSLYIAFNTQRSFKSHWDS
                     RDIFAVQMQGKKRWIIHTPTFKKTIVYAS"
     gene            213..>611
                     /locus_tag="PXE92_002789"
     CDS             213..>611
                     /locus_tag="PXE92_002789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin-like domain-containing protein"
                     /protein_id="HDL5761961.1"
                     /translation="MHRSKDMPEYAPNLDDVYMDIVLEAGDVLYLPRGWWHDPIPVGE
                     ETVHLAVGIFPAYTHNYLTWVSQNMVEKEIARASLSHYESDKELIAQLAEQTAEYIKD
                     KENYHKFIENFYDQKRVEKPLNLETLGNYQY"
BASE COUNT          200 a           87 c          118 g          206 t
ORIGIN      
        1 aaatggtatt gtaaatgaac caagtgttga ttgcttctct caagagatag ctcaatttac
       61 aggctgtcat attttttcaa gtttatatat tgcgtttaat actcaaagat cttttaaaag
      121 ccattgggat agtcgtgata tttttgcagt tcaaatgcag ggtaaaaagc gttggattat
      181 tcacactcca acatttaaaa aaaccattgt ttatgcatcg tagtaaagat atgcctgaat
      241 atgctcctaa tcttgatgat gtatatatgg atattgtatt agaagctgga gatgttcttt
      301 atttacctcg tggctggtgg cacgatccta ttcctgttgg agaagaaact gtgcatttag
      361 ctgtaggcat ttttcctgct tatactcata actatctgac ttgggtatct caaaatatgg
      421 ttgagaaaga aattgcccga gcttctttat cgcattatga gtcagataaa gagttgatag
      481 cacagttggc agaacaaaca gcagaatata ttaaagataa agagaattat cataaattta
      541 tagagaattt ttatgatcag aagcgggttg aaaagccact taatttggaa actttaggaa
      601 attatcaata t
//
LOCUS       DANMBQ010000298          605 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.304, whole genome shotgun sequence.
ACCESSION   DANMBQ010000298 DANMBQ010000000
VERSION     DANMBQ010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.304"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..322
                     /locus_tag="PXE92_002790"
     CDS             <1..322
                     /locus_tag="PXE92_002790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5761962.1"
                     /translation="ESTQERVLACLIYLRKFGYSLGRPYADTVYQSKFPNMKELRIQN
                     KGKPIRAFYAFDPLRQAIVLCAGEKGKDKRFYEKMIALADAEFTSYLNNLEKENENVR
                     SNAQ"
     gene            294..593
                     /locus_tag="PXE92_002791"
     CDS             294..593
                     /locus_tag="PXE92_002791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL5761963.1"
                     /translation="MKTLDQMLNELSPERRQKVEDMAQEMIREIQLSKLREELNLSQQ
                     QLATALGISQPAIAKLEQKDNDPRLSTLKRYIEAMGGKLKLAVELPTGDERVIRI"
BASE COUNT          209 a          111 c          116 g          169 t
ORIGIN      
        1 tgaaagtact caagaacgtg tcttggcttg tttaatctat ctgcggaaat tcggttatag
       61 tctaggcaga ccttatgctg atacagttta tcagtctaaa ttccctaata tgaaagagtt
      121 acgcattcaa aacaaaggta agccaattcg agcattttat gcttttgacc ctttacgcca
      181 agcgatagta ctttgtgctg gcgagaaagg taaagacaaa agattctatg aaaaaatgat
      241 cgctcttgct gatgcggaat ttacctccta tttaaataat ttagagaaag aaaatgaaaa
      301 cgttagatca aatgctcaat gaactctctc ctgaacgccg ccaaaaagtg gaagatatgg
      361 ctcaagaaat gattagagag atacaacttt caaaactaag agaagagcta aatctctctc
      421 aacaacaatt agctacagct ctcggtattt cacagcctgc tattgctaaa cttgaacaga
      481 aagataacga tccaagatta tccacgctca aacgctatat tgaagcaatg ggcggtaagt
      541 taaaacttgc cgttgaattg cctacaggcg atgagcgtgt aattaggatt taattacttt
      601 gttaa
//
LOCUS       DANMBQ010000299          575 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.305, whole genome shotgun sequence.
ACCESSION   DANMBQ010000299 DANMBQ010000000
VERSION     DANMBQ010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.305"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            148..>575
                     /locus_tag="PXE92_002792"
     CDS             148..>575
                     /locus_tag="PXE92_002792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761964.1"
                     /translation="MELGKTTETDVKEMYNLEPEGVNKYSKGNQYFIDPTQLDLEDLK
                     STLIIFDEKGVLVFVGSEFNSISSIEDSKNRYKKFDYLYKILASKYKLVKKERPFVGD
                     QYAKFKDGNSEIELSEPHMGGFKINLTYAKKEFLDAFQKI"
BASE COUNT          225 a           79 c           96 g          175 t
ORIGIN      
        1 taacaaaaat agcatccccg caagaatgag gagatggcta tttttgttat ttatagctta
       61 taggaaactc attatgaaaa agatgttaaa gctacattat ttgcaactat tagtacttct
      121 gtattagctg aaccaaccgt ttttaaaatg gaactaggta aaacaacaga aacagatgta
      181 aaagaaatgt ataaccttga accggagggt gttaataaat acagcaaggg taatcagtat
      241 tttattgatc caacgcaatt agatttagaa gatcttaaat caacgcttat tatctttgat
      301 gaaaaagggg tattagtttt tgttggttcc gagtttaatt ctatatcttc tatcgaggat
      361 tcaaaaaacc ggtataaaaa attcgattat ttgtacaaaa tactagcaag caaatataaa
      421 cttgtaaaaa aagaacgtcc atttgtaggc gatcaatatg ctaaatttaa agacggtaat
      481 tcagaaatcg aattatcaga accacatatg ggtggtttta aaattaactt gacttatgca
      541 aaaaaagaat tcttagacgc attccaaaag ataca
//
LOCUS       DANMBQ010000300          574 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.306, whole genome shotgun sequence.
ACCESSION   DANMBQ010000300 DANMBQ010000000
VERSION     DANMBQ010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.306"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            98..523
                     /locus_tag="PXE92_002793"
     CDS             98..523
                     /locus_tag="PXE92_002793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL5761965.1"
                     /translation="MYKHILVAVDLSEESLVLVRKGAALAEKCGAKLSLIHVDVNFSD
                     LYTGLIDINMSSVQYSVVEETNTALAELASKVNYPVSECLNGTGDFSQVLEEAVEKHN
                     VDLLITGHHQDFWSKFMSSTRRVMNNITVDMLVVPLADE"
BASE COUNT          183 a           90 c          115 g          186 t
ORIGIN      
        1 tttttatttt tgagatctac ttcaagtttt tatcaaaaag agtgtgttag tatgtttata
       61 cacaaagtaa acaactctca caagcaagga gcatattatg tataaacata tcttagttgc
      121 agtggatctt tctgaagaaa gtcttgtttt agtgcgtaag ggggctgcgt tagcagaaaa
      181 atgcggagct aaactttccc tcattcacgt tgatgttaat ttttcggatc tctatacagg
      241 attaattgat attaatatgt cttcggtaca atacagtgtt gttgaagaaa caaatacggc
      301 actggctgaa cttgcctcaa aagtaaatta tcctgtatct gaatgtttaa acggaacggg
      361 agattttagt caagttttgg aagaggccgt agaaaaacac aatgtcgatt tactcatcac
      421 tggccatcat caggacttct ggagtaaatt tatgtcttca actcgtcgag tcatgaataa
      481 tatcactgtt gatatgctgg ttgtgccatt agcagatgaa tagcaagaaa gtgaatgaaa
      541 aataaccgct tgagacagtt tatctgtctt acaa
//
LOCUS       DANMBQ010000301          557 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.307, whole genome shotgun sequence.
ACCESSION   DANMBQ010000301 DANMBQ010000000
VERSION     DANMBQ010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.307"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>557
                     /locus_tag="PXE92_002794"
     CDS             <1..>557
                     /locus_tag="PXE92_002794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761966.1"
                     /translation="INTLIEYFQDFSKNNLNNEKSNNNDYYHFRNLINGLEDIIQILN
                     SSELSLFNGKVLVLTGQAGSGKSHLLGDFVQKRQNSGKYSLLLLGQDFTEKSNAWNQI
                     LSKQLNLNITPEVFLSALDSIGEMQKERVILAIDALNEGEGKSLWNNQLNGLIELVSQ
                     YPNIGLVLSVRDSYQDIIFNKLNIK"
BASE COUNT          211 a           68 c           91 g          187 t
ORIGIN      
        1 aattaataca ttaatagaat actttcaaga tttttcaaaa aacaatctaa acaacgaaaa
       61 atccaataat aatgactatt atcattttag aaatttaatt aatggtttgg aagacattat
      121 tcagatttta aattcatctg aattatcatt atttaatggt aaagtgcttg ttttaactgg
      181 tcaagctggt agtggaaaat ctcatttatt gggtgatttt gtccaaaaaa gacaaaattc
      241 tggaaagtat tctttgttgt tattggggca ggattttaca gaaaaatcca atgcttggaa
      301 tcaaatctta tccaaacaat taaatcttaa tatcacaccc gaagtatttt tatccgcatt
      361 agatagtatc ggagaaatgc aaaaagaacg ggttatttta gccatagacg ccttaaatga
      421 gggtgaaggg aaatcattat ggaataacca acttaatgga ttaattgagt tggtaagtca
      481 atatccaaat attggactgg ttctgagtgt gcgagatagc taccaagata ttatttttaa
      541 taaattaaat attaaaa
//
LOCUS       DANMBQ010000302          540 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.308, whole genome shotgun sequence.
ACCESSION   DANMBQ010000302 DANMBQ010000000
VERSION     DANMBQ010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.308"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..>540)
                     /locus_tag="PXE92_002795"
     CDS             complement(<1..>540)
                     /locus_tag="PXE92_002795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761967.1"
                     /translation="NESYDFRGKEFEEPVQAILVESDKIYFIGSTIDAIFDKTLIDNT
                     KASDVIYFLNKLLQSPYGRKISNHLITLAIYDENIQIQYSPQFIAKNLTMSDIQALQK
                     LGFQFSHSKEYLWKSYAGLGGKITQFKNRKEILEKYKFKQPIIAKAKSYQKSIEFSFD
                     DTISVIAAPITIPASIILFV"
BASE COUNT          169 a           86 c           82 g          203 t
ORIGIN      
        1 tacaaataaa ataatagatg cgggaatcgt aattggtgct gcaatgaccg aaatggtgtc
       61 atcaaagcta aattctatgc ttttctgata acttttcgct ttagcgatta taggttgctt
      121 aaatttatac ttttctagta tttccttgcg atttttaaac tgtgtgattt taccaccaag
      181 acctgcatag cttttccata gatattcttt tgaatggcta aattgaaaac ctaacttttg
      241 tagagcttga atatcgctca tggtgagatt ttttgcaata aattgcggac tgtactgaat
      301 ttgaatattt tcatcataaa tggctaaagt aattaggtga ttactgatct tccttccata
      361 cggactttga agaagtttat tcaaaaaata aataacatct gaagcttttg tattatctat
      421 cagcgtttta tcaaatatcg catcaattgt ggaaccaatg aaataaattt tatctgattc
      481 aaccaaaatt gcttgtacag gttcttcaaa ttcttttcct ctaaaatcat aactttcgtt
//
LOCUS       DANMBQ010000303          535 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.309, whole genome shotgun sequence.
ACCESSION   DANMBQ010000303 DANMBQ010000000
VERSION     DANMBQ010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.309"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>535
                     /locus_tag="PXE92_002796"
     CDS             <1..>535
                     /locus_tag="PXE92_002796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDL5761968.1"
                     /translation="NIYQSKFADIACGSGAFLLEVYQRLQDILVDYYIQNDKNKLEET
                     GVNQYKLRFEDKKNLLLNCVWGVDKDFNAVKACRFGLLLKLLENESDVTIANKISILP
                     NLDQNILWGNSLIDLSDKLTEKEKLKVNPINLQEYKFNVIIGNPPYLATEYMSSLYPE
                     EFKIYKSKYFVADKQFD"
BASE COUNT          219 a           65 c           85 g          166 t
ORIGIN      
        1 ctaatattta tcagagtaaa tttgcagata tagcttgtgg atcaggcgca ttcttactag
       61 aagtgtatca aagattacag gatatattag ttgactacta catccaaaat gataaaaata
      121 aactagaaga aactggtgta aatcaataca agttacgttt tgaagataaa aagaacttat
      181 tattaaattg cgtttggggg gtagataaag atttcaatgc agtaaaagcc tgtagatttg
      241 ggttgcttct aaaattacta gaaaatgaaa gcgatgtaac aatcgctaat aagattagta
      301 ttctgcctaa cttagatcaa aatatactct ggggaaatag tttaatagat ttaagtgata
      361 aattaacaga aaaagaaaaa cttaaagtaa atccaattaa cctacaagaa tataaattta
      421 atgttattat tggtaatcct ccatatttag ccacagagta tatgtcctca ttatatccag
      481 aagaatttaa aatatataaa tcaaaatatt ttgtagctga caagcaattt gacaa
//
LOCUS       DANMBQ010000304          524 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.310, whole genome shotgun sequence.
ACCESSION   DANMBQ010000304 DANMBQ010000000
VERSION     DANMBQ010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 524)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.310"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(116..191)
                     /locus_tag="PXE92_002797"
     tRNA            complement(116..191)
                     /locus_tag="PXE92_002797"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(156..158),aa:Thr,seq:ggt)
     gene            complement(195..269)
                     /locus_tag="PXE92_002798"
     tRNA            complement(195..269)
                     /locus_tag="PXE92_002798"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(234..236),aa:Gly,seq:tcc)
     gene            complement(313..397)
                     /locus_tag="PXE92_002799"
     tRNA            complement(313..397)
                     /locus_tag="PXE92_002799"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(361..363),aa:Tyr,seq:gta)
     gene            complement(432..507)
                     /locus_tag="PXE92_002800"
     tRNA            complement(432..507)
                     /locus_tag="PXE92_002800"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(472..474),aa:Thr,seq:tgt)
BASE COUNT          156 a          121 c          122 g          125 t
ORIGIN      
        1 tttctaaaag cctcttaaac aaaaacggtt acaatggaac aaaagaaccc attaaccata
       61 atgtagaaat taataccaat aaaaatttgc gtgagaaaga tagaattcag agaagtggtg
      121 ctgataggcg gatttgaacc gccgacctca cccttaccaa gggtgcgctc taccaactga
      181 gctatatcag cgcttggagc gggcagcggg aatcgaaccc gcatcattag cttggaaggc
      241 taaggtaata gccattatac gatgcccgct gttctaaatt cgtctgacct acgcgattca
      301 aaatatcaga gatggtggag ggagaaggat tcgaaccttc gaaggctgag ccaacagatt
      361 tacagtctgc cccctttggc cgctcgggaa cccctccacg ataattgaat acttatttac
      421 gcctgagtta atggtgccga ctaccggaat cgaactggtg acctactgat tacaagtcag
      481 ttgctctacc tactgagcta agtcggcgtt gctgtgtcgt aagc
//
LOCUS       DANMBQ010000305          518 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.311, whole genome shotgun sequence.
ACCESSION   DANMBQ010000305 DANMBQ010000000
VERSION     DANMBQ010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.311"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..>518)
                     /locus_tag="PXE92_002801"
     CDS             complement(<1..>518)
                     /locus_tag="PXE92_002801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761969.1"
                     /translation="SNIDFARIAFDSIRSAQNCTVLGLDISKFFDHIDHKILKDMWCK
                     VLGVPSLPEDHHSVFKAITKFVKVDRDTVFEFFNISLHNPRKNGKNRICSPREFREYR
                     KLKKPDLFNDNPAFFINKGQKGIPQGSPISALLSNIYMLEFDVLVKEKIMECKGSYFR
                     YCDDILCIIPNE"
BASE COUNT          179 a           98 c           69 g          172 t
ORIGIN      
        1 ttcattagga atgatacata gaatgtcatc acaataacga aaataactcc ctttgcactc
       61 cataatcttt tctttaacta acacatcaaa ctctaacata tagatattgg ataacaatgc
      121 acttattgga gaaccttgag gaatcccttt ctggccttta ttaataaaaa aagctggatt
      181 atcattaaat aagtcaggtt tctttaattt cctatattct cgaaattccc gagggctaca
      241 aattctattc ttcccatttt tcctaggatt atgaagggag atattaaaga attcaaatac
      301 agtatctcta tctactttta cgaatttagt aatagcctta aatacagaat gatggtcttc
      361 aggtaaacta ggtacaccca aaactttaca ccacatatct ttcagaattt tatggtctat
      421 atggtcaaag aacttagata tatctagccc taaaaccgtg caattttgag cgcttcgaat
      481 actatcaaaa gcgattctgg caaaatcaat attgcttt
//
LOCUS       DANMBQ010000306          512 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.312, whole genome shotgun sequence.
ACCESSION   DANMBQ010000306 DANMBQ010000000
VERSION     DANMBQ010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.312"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>512
                     /locus_tag="PXE92_002802"
     CDS             <1..>512
                     /locus_tag="PXE92_002802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5761970.1"
                     /translation="INKKMAEIGTTTLEIGGKEHELEDLENQINALALTDEEKLAEDV
                     ENDLISKLDEAKAALAKNQQTLKEKRDELLGLNNKLDSSPLVKKGKNALAEGTNAFAS
                     GENAIAFGTDSQATGNNAIALGANSKANAESAIAIGKGAQALKEKALALGENAIANRA
                     SAIAIGDNHS"
BASE COUNT          196 a           92 c          108 g          116 t
ORIGIN      
        1 aattaataaa aaaatggctg aaataggtac tacaacacta gagattggtg gtaaagaaca
       61 cgagctcgag gatcttgaaa accaaattaa tgctttagct ttaactgatg aagaaaaact
      121 tgcggaagat gtggaaaatg atttaatctc aaagcttgat gaggctaaag cagccttagc
      181 aaaaaaccag caaacgctca aagaaaagcg tgatgaatta ctagggctaa ataacaaatt
      241 agatagctca ccacttgtta aaaaaggtaa aaatgcactt gcagaaggca cgaatgcctt
      301 tgcttctggt gaaaatgcca tcgcattcgg cacggattca caagctacag gtaataacgc
      361 tatcgcacta ggtgcaaatt caaaagcaaa cgcagaaagt gcgattgcaa ttggtaaagg
      421 tgcacaagca ttaaaagaaa aagcccttgc tttaggcgaa aatgccattg ccaacagagc
      481 atctgctatt gcgattggtg ataaccattc at
//
LOCUS       DANMBQ010000307          509 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.313, whole genome shotgun sequence.
ACCESSION   DANMBQ010000307 DANMBQ010000000
VERSION     DANMBQ010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.313"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>509
                     /locus_tag="PXE92_002803"
     CDS             <1..>509
                     /locus_tag="PXE92_002803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761971.1"
                     /translation="SHCTLLNACSKALGFSGGFAGFQEDYLSNLTQFMEKHGLLYLVD
                     LTKQKYPVNDMCMTRSLALKKQDISERIFFSGKEIPKRIFTGFNFRYDMHLANGFRIG
                     NSLKTPYSDIGICEDINEALKNPSIKIDCRDGTIRSMADVVIGRYLDKVLFYYFNLIG
                     DQLVQPRLD"
BASE COUNT          177 a           70 c           95 g          167 t
ORIGIN      
        1 tctcactgta ctttgttaaa tgcttgctca aaagctttag gattttctgg aggctttgca
       61 gggtttcaag aagattattt atctaatttg acgcaattca tggaaaaaca tgggctctta
      121 tatcttgtag atttaacaaa acaaaaatat ccagtaaatg atatgtgcat gacaaggagc
      181 ttagctctga aaaagcaaga tatatctgaa agaattttct ttagcggaaa ggaaatccct
      241 aagagaatat ttactggatt taatttccga tatgatatgc atttagctaa tggttttcgt
      301 atcggaaatt ccttaaaaac cccatattct gacataggta tatgtgaaga cataaatgaa
      361 gcattaaaaa atccatcaat aaaaattgat tgccgtgatg gcacaatcag aagtatggca
      421 gatgtagtca taggtagata tcttgataaa gtattgtttt attattttaa cttgataggt
      481 gatcagttag tccagcctag attggataa
//
LOCUS       DANMBQ010000308          508 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.314, whole genome shotgun sequence.
ACCESSION   DANMBQ010000308 DANMBQ010000000
VERSION     DANMBQ010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.314"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..476)
                     /locus_tag="PXE92_002804"
     CDS             complement(<1..476)
                     /locus_tag="PXE92_002804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5761972.1"
                     /translation="MQTKPILDACCGSRMFHFDKQNPHVLFADNRQIETTMKDSGKVR
                     HLEIKPDVLHDFTNMPYENESFWHVVFDPPHLVQGGENSWLVKKYGKLPCNWREVLKK
                     GFDECMRVLKPNGTLIFKWNETQIPVSEILKVIDCQPIYGHKSGRLNQTHWLAFVK"
BASE COUNT          139 a          108 c           94 g          167 t
ORIGIN      
        1 attttcacaa acgccagcca atgtgtttgg ttcaagcgtc cgcttttgtg tccataaatc
       61 ggctgacaat caataacttt taaaatttct gaaacgggga tttgtgtttc attccacttg
      121 aaaataagcg tgccgtttgg ttttagcact cgcatacatt cgtcaaagcc tttcttcaag
      181 acttctcgcc agttgcaagg taatttgccg tacttcttca caagccagct attttctcca
      241 ccttgaacta aatgtggcgg atcaaaaaca acgtgccaaa aactctcgtt ttcgtatggc
      301 atattcgtga agtcgtgtaa aacatcaggt ttgatttcta aatggcggac tttgccactg
      361 tctttcattg tggtttctat ttgtcgatta tcagcaaata aaacgtgtgg attttgcttg
      421 tcaaaatgaa acatacggga accacaacag gcatctaata tcggttttgt ttgcattttt
      481 tctccaaaaa ataaccgctt gcggaaca
//
LOCUS       DANMBQ010000309          480 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.316, whole genome shotgun sequence.
ACCESSION   DANMBQ010000309 DANMBQ010000000
VERSION     DANMBQ010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.316"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..>480)
                     /locus_tag="PXE92_002805"
     CDS             complement(<1..>480)
                     /locus_tag="PXE92_002805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha2 family transposase"
                     /protein_id="HDL5761973.1"
                     /translation="QHKLIELFVAGVTARTAAELVNVNKTTAAYYFHRLRLLIYQHSP
                     HLEMFEGEIEADESYFGGARKGKRGCGAAGKTAVFGLLKRDDKVYTVVVPNTQSATLL
                     PIIREKVKPDSLVYADFYRSYDVLDVSEFNHFRINHSTHFAENHNHINGIENFWSQAK
                     "
BASE COUNT          133 a          110 c           98 g          139 t
ORIGIN      
        1 ttttgcttga ctccaaaaat tctcaattcc gttaatgtga ttgtgatttt cagcgaagtg
       61 tgtgctgtga ttgatacgaa aatggttaaa ttcactcaca tcaagcacat catagcttcg
      121 ataaaaatcg gcgtaaacaa ggctgtctgg cttcactttc tcccgaataa tcggcaaaag
      181 tgtggcagat tgcgtatttg gtacgacaac ggtataaacc ttgtcatcac gttttaacag
      241 cccaaatacg gcagttttgc ctgcggcacc acaccctcgt ttacctttgc gagcaccacc
      301 gaaataactt tcgtccgctt caatttcacc ctcaaacatt tccagatgag ggctatgttg
      361 atagatgagc aatcgcaaac ggtgaaagta ataggcagcg gtggttttgt ttacattcac
      421 caactcagcc gctgttcgag cagtgacacc tgctacaaac agttcaatga gtttatgttg
//
LOCUS       DANMBQ010000310          452 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.317, whole genome shotgun sequence.
ACCESSION   DANMBQ010000310 DANMBQ010000000
VERSION     DANMBQ010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.317"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>452
                     /locus_tag="PXE92_002806"
     CDS             <1..>452
                     /locus_tag="PXE92_002806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5761974.1"
                     /translation="FEYLAIYDCSEIVDVQQDALYARVRLYHYTEYVKFFDEIMNLLG
                     RESVYSGHFDNEWREISQKIENSKQTVDELFFEQINKWRHVLGSELLKINPCISNNEL
                     NDAVQDYINSIIFLRVCEDRSIECYESLLDVTKLEKHKKFKTNLEKAD"
BASE COUNT          175 a           51 c           79 g          147 t
ORIGIN      
        1 tttgaatatc ttgctatata tgattgttca gaaatagttg atgtacaaca agatgctcta
       61 tacgcaaggg tacgattata tcactataca gaatatgtga aattttttga tgaaattatg
      121 aatctcttag gtagagaaag tgtttattca ggtcattttg ataatgaatg gcgtgaaatc
      181 tctcaaaaaa tagaaaactc taagcaaaca gtggatgaac tattttttga acaaattaat
      241 aagtggcggc atgttctggg tagtgaatta cttaaaatta acccttgtat ttcaaacaat
      301 gaattaaatg atgcagttca agactatatt aatagcataa tctttttaag agtatgtgaa
      361 gatcgaagta ttgaatgtta tgaatctttg ctggatgtca caaagttaga aaaacataaa
      421 aaatttaaaa caaacttaga aaaagctgac aa
//
LOCUS       DANMBQ010000311          447 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.318, whole genome shotgun sequence.
ACCESSION   DANMBQ010000311 DANMBQ010000000
VERSION     DANMBQ010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.318"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            15..>447
                     /locus_tag="PXE92_002807"
     CDS             15..>447
                     /locus_tag="PXE92_002807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL5761975.1"
                     /translation="MNNYVISLTSAQERRKHIEAEFGKQNIPFQFFDAITPDLIKEKA
                     KAFNIDISNTNLTKGEIACALSHIALWHLAKQQNLDYICIFEDDIYLGNNAFELLKTN
                     YIPENTHIVKLETLPFDRINRFNKTEKYILNRRLFKLNSRHV"
BASE COUNT          179 a           59 c           65 g          144 t
ORIGIN      
        1 gatagattaa atttatgaat aattatgtaa ttagcctaac ctccgcacag gagcgtagaa
       61 aacatattga agctgaattc ggcaaacaaa atattccttt tcaatttttc gatgcgatta
      121 cgccggattt aattaaagaa aaagccaaag catttaatat tgacatttca aatacaaact
      181 taacaaaagg tgaaatagcc tgtgctttga gtcatattgc attatggcat ttagccaaac
      241 aacagaattt ggattatatt tgtatttttg aagatgatat ttatttaggt aataatgcat
      301 ttgaattact aaaaacaaat tatataccag aaaatactca tattgttaaa ttagagacac
      361 taccatttga tagaataaat cgttttaaca aaaccgagaa atacatatta aatagaaggc
      421 tttttaaatt aaacagtaga catgttg
//
LOCUS       DANMBQ010000312          431 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.319, whole genome shotgun sequence.
ACCESSION   DANMBQ010000312 DANMBQ010000000
VERSION     DANMBQ010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.319"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>431
                     /locus_tag="PXE92_002808"
     CDS             <1..>431
                     /locus_tag="PXE92_002808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011150324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL5761976.1"
                     /translation="IFISAGGVRSIWLRHNLANFKQRLNALEKAVAEKGIILSENQVQ
                     ALERKKEDDVACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLY
                     TMKTAISAADMLNDKVLPFFESQGLPMLRILTDRGSEYCGKV"
BASE COUNT          126 a           78 c          105 g          122 t
ORIGIN      
        1 atttttattt cagcaggtgg tgtgcgttct atttggctac gccataatct cgctaacttt
       61 aaacagcgtt taaatgcgtt agaaaaagca gtggctgaga aaggcattat tctgagtgaa
      121 aaccaagttc aagccttgga gcgtaaaaaa gaagacgatg tggcttgtgg cgaaattgaa
      181 acggctcatc cgggctatct aggttcacaa gataccttct atgtggggaa tcttaagggg
      241 gttggacgca tttatcaaca gacctttatt gatacttata gtaaagtcgc atttgcaaaa
      301 ctgtatacga tgaagacagc aattagtgca gcagatatgc tcaatgataa agtcctaccg
      361 ttctttgagt cccaaggatt accgatgttg cgtattctta ccgaccgagg cagtgagtac
      421 tgtggcaagg t
//
LOCUS       DANMBQ010000313          428 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.320, whole genome shotgun sequence.
ACCESSION   DANMBQ010000313 DANMBQ010000000
VERSION     DANMBQ010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.320"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>428
                     /locus_tag="PXE92_002809"
     CDS             <1..>428
                     /locus_tag="PXE92_002809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011150324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HDL5761977.1"
                     /translation="FVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQA
                     LERKKEDEIACGEIETVHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYT
                     MKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKV"
BASE COUNT          133 a           74 c          100 g          121 t
ORIGIN      
        1 tttgtttcag caggaggtgt acgttcgatt tggttacgtc atcatcttgc caattttaag
       61 caaagattaa tcgccctgga aaaactggtt gcagaacaag gtattatact cagtgaaaca
      121 caggtacaag ccttagagcg taagaaagaa gatgagattg cctgtggtga aattgaaacg
      181 gtacaccctg gctatcttgg ctcacaagat actttctatg tgggcaacct caaaggagtg
      241 ggtcgtattt atcaacaaac gtttattgat acttacagta aagtggcgtt tgcaaaactt
      301 tatacaatga agaccgctat cagtgctgcg gatatgctga atgataaagt gttaccatac
      361 tttgaaagcc aaggtttacc gatgttacgc atattaactg accgaggaag tgaatattgt
      421 ggcaaggt
//
LOCUS       DANMBQ010000314          425 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.321, whole genome shotgun sequence.
ACCESSION   DANMBQ010000314 DANMBQ010000000
VERSION     DANMBQ010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.321"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
BASE COUNT          146 a           81 c           72 g          126 t
ORIGIN      
        1 aagttaatat tttaagtgcc caataaacat atatatcaaa gttatctggt tactatcatt
       61 cgtgtattgt aatctcgcaa ttcaacatca ctaataaaaa attctccaac atattcagag
      121 agttttttct actgatacca actaaatttt ggttcaatac tcgaagttaa atttggttca
      181 gagaaaaaag cctctaaatg gcaaaagggt aaggggccct aacgggcaag ggtaatcccc
      241 taagggggat aagagtaacc tttccaaggg gaaaggtctt acccaaaagg gcaaagggct
      301 aaacggcttt ctttcaacgc aaacatcatc tttttcggtc tatttcaatg cactcaattc
      361 tcaaaaaaat tcttggcaaa agtaaatcct cgtctcaaag ttcggttaaa tctgacaatg
      421 ttttc
//
LOCUS       DANMBQ010000315          419 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.322, whole genome shotgun sequence.
ACCESSION   DANMBQ010000315 DANMBQ010000000
VERSION     DANMBQ010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.322"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            2..403
                     /locus_tag="PXE92_002810"
     CDS             2..403
                     /locus_tag="PXE92_002810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H-NS histone family protein"
                     /protein_id="HDL5761978.1"
                     /translation="MSALKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMK
                     QEELEKLKQLESLNKYREMLKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDAN
                     GNEKTWTGQGRTPKALQDALDSGKKLEDFAI"
BASE COUNT          175 a           54 c           76 g          114 t
ORIGIN      
        1 aatgtcagct ttaaaaagtc ttttgaatat ccgcagctta agggctttgg ctaaagattt
       61 agcattagag caattaaaat caatttctga gaaattagat ataattattg ctgaaaaaga
      121 agaagaaatg aaacaggaag aattagaaaa actaaaacaa ctagaaagtt taaataaata
      181 tagagaaatg ctaaaacaag atgggttatc tattgatgaa ttagctgaat tattagcaga
      241 taaagtaatc aaaacccgca aagcactatc acctcgcccg gctaaatata aatttgttga
      301 tgctaacggc aatgagaaaa cttggacagg tcaaggcaga acaccaaagg cattacaaga
      361 tgctttagat agtggtaaaa aattagaaga ttttgctatt taattggcta taactattt
//
LOCUS       DANMBQ010000316          409 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.323, whole genome shotgun sequence.
ACCESSION   DANMBQ010000316 DANMBQ010000000
VERSION     DANMBQ010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.323"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(184..>409)
                     /locus_tag="PXE92_002811"
     CDS             complement(184..>409)
                     /locus_tag="PXE92_002811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sialyltransferase"
                     /protein_id="HDL5761979.1"
                     /translation="SKMIFEDYISELLLYKSKIIVYTFFSSVALNIANFDGVEVRIIK
                     LSVSESCDDINNAYRLFEELGIDTYSEIEI"
BASE COUNT          182 a           69 c           38 g          120 t
ORIGIN      
        1 ttatatagaa atgctaccat tgccaatgaa taggataagt taaagaaaaa tatctttata
       61 cgattctcat taagattgcg tgataaaaag aaataaagcc cacccaaata taagcctaat
      121 atagggaaaa caaaattaaa aacggaaaaa aaataaatca tacaaaagcc ttaagctaac
      181 aaatcaaatt tctatttcac tatatgtatc aatccctaac tcttcaaata gtctatatgc
      241 attattaata tcatcacaac tttcacttac acttaacttt attatacgca cctcaacccc
      301 atcaaaatta gctatattaa gtgcaacaga actaaaaaag gtatatacaa taattttact
      361 tttatagaga agtaactcag aaatataatc ttcaaaaatc attttagaa
//
LOCUS       DANMBQ010000317          401 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.324, whole genome shotgun sequence.
ACCESSION   DANMBQ010000317 DANMBQ010000000
VERSION     DANMBQ010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.324"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            123..>401
                     /locus_tag="PXE92_002812"
     CDS             123..>401
                     /locus_tag="PXE92_002812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HDL5761980.1"
                     /translation="MKNRIEHPKIFISYAWGSQEHDEKVIALATNLKGDGIDVIFDKW
                     QLKEGNDTFKFMEKSVLDESITNVLILIDPIYAKKANERAGGVGTETQI"
BASE COUNT          152 a           41 c           94 g          114 t
ORIGIN      
        1 agagactgta gattggcatg atgggatgat aaaagaggct actggagagt ataagtcata
       61 gtgattataa gatagtgaga aagaatactt attttgaaag gaatacatgg gaattgatac
      121 agatgaagaa tagaattgaa catcctaaga tttttatttc atatgcttgg ggatcacagg
      181 aacatgatga gaaggttatt gctttagcta caaatcttaa aggagatggt atagatgtca
      241 tttttgataa atggcagcta aaagaaggca atgatacctt taaattcatg gaaaaaagtg
      301 ttttagatga gagtattacc aatgtactga ttcttataga tcctatttat gcaaagaaag
      361 caaatgaaag agccggtggc gtaggtacag aaacacagat t
//
LOCUS       DANMBQ010000318          390 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.325, whole genome shotgun sequence.
ACCESSION   DANMBQ010000318 DANMBQ010000000
VERSION     DANMBQ010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.325"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..348
                     /locus_tag="PXE92_002813"
     CDS             <1..348
                     /locus_tag="PXE92_002813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761981.1"
                     /translation="QKYVEKVNQKNPQALKDLDNISNLKKINENLKKAAKFTGIISSI
                     KDYYDLAEGFRNGIKSNDWEPFLKTSAQIGASALMSMLVASMITGPTTIGSIIISAAF
                     ISIGGYIISLASR"
BASE COUNT          143 a           61 c           66 g          120 t
ORIGIN      
        1 caaaaatatg tcgaaaaagt caaccaaaag aatcctcagg cactaaaaga tctcgataac
       61 atatccaact taaaaaaaat taatgagaat ttaaaaaaag cagcaaaatt tactggtatt
      121 attagcagta ttaaggatta ttacgatcta gcagaagggt ttagaaatgg cataaagtct
      181 aatgattggg aacctttttt aaagacatct gctcagatag gtgcttcagc tttaatgagt
      241 atgttagtag cctcaatgat aacaggccca acgacaattg ggagtattat tattagtgct
      301 gcatttattt ctataggggg atatattatt tcactagctt cccgttagat agtctttgtt
      361 atactcaata acctactata ctacctatag
//
LOCUS       DANMBQ010000319          375 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.326, whole genome shotgun sequence.
ACCESSION   DANMBQ010000319 DANMBQ010000000
VERSION     DANMBQ010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.326"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            23..>375
                     /locus_tag="PXE92_002814"
     CDS             23..>375
                     /locus_tag="PXE92_002814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlwI family type II restriction endonuclease"
                     /protein_id="HDL5761982.1"
                     /translation="MSNKSIPYQSFCWVIGTTSFRTAKLNLKIEAQLLLLDEFFNEVI
                     KESSWNWNNELQEKYYDFMKDRAFLTGEAKRKDKDAREKTSGLVDIGLITEDRLITDA
                     GRELLKVTSSGDFET"
BASE COUNT          150 a           38 c           82 g          105 t
ORIGIN      
        1 tgtgaattgg aggaataagt aaatgtctaa taaaagtatt ccatatcaaa gtttttgttg
       61 ggttatagga actacaagtt ttagaactgc aaaactaaat ttaaaaatcg aggcacagtt
      121 gttgcttctt gatgagtttt ttaatgaggt cataaaggaa tcaagttgga actggaacaa
      181 tgaattgcaa gaaaaatatt atgattttat gaaagataga gctttcctaa caggagaagc
      241 aaaaagaaaa gacaaagatg ccagagaaaa aacatcagga ttggttgata ttggtttaat
      301 tacagaagat agattgatta cggatgcagg aagagaactc cttaaagtaa caagtagtgg
      361 ggattttgaa accaa
//
LOCUS       DANMBQ010000320          367 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.327, whole genome shotgun sequence.
ACCESSION   DANMBQ010000320 DANMBQ010000000
VERSION     DANMBQ010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.327"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..330)
                     /locus_tag="PXE92_002815"
     CDS             complement(<1..330)
                     /locus_tag="PXE92_002815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL5761983.1"
                     /translation="MALAADLGYQTQVETLIKSLCYHHSHLKIYLFQKTFPNEWFDIW
                     CQKLALLSSEIIPVKVCVDFSKYKSLEHINETGFYRYLIPYLDEERVLYLDSDIVVDD
                     NLSEMYWL"
BASE COUNT          134 a           56 c           57 g          120 t
ORIGIN      
        1 aagccagtac atttctgata aattatcatc aaccacaata tctgaatcta aatatagtac
       61 acgttcttcg tccagatatg gaataaggta acgataaaaa cccgtttcat taatatgctc
      121 taaactctta tattttgaaa aatctacaca gactttcaca ggaataattt cactcgataa
      181 taaggctaat ttttggcacc agatatcaaa ccattcatta ggaaaagttt tctgaaatag
      241 ataaatctta agatgagaat gatgataaca aagcgattta attaaggttt caacttgagt
      301 ttgatagcct aaatcagctg ctaatgcaat aactattggt tggttggttg attgattgat
      361 tgattga
//
LOCUS       DANMBQ010000321          366 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.328, whole genome shotgun sequence.
ACCESSION   DANMBQ010000321 DANMBQ010000000
VERSION     DANMBQ010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.328"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>366
                     /locus_tag="PXE92_002816"
     CDS             <1..>366
                     /locus_tag="PXE92_002816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761984.1"
                     /translation="NTTNVDLKITIGTRQYSHSFNGKYSSQYLESVVFDNLPPVPFNI
                     SVERLTEDSNSQRLQNGTIWSSYTEIIDTEFTYPNSAVAGISFDSEYFNNIPTRNYLI
                     KAKKVKVPSNYDPVKRTYTG"
BASE COUNT          117 a           84 c           67 g           98 t
ORIGIN      
        1 aataccacca atgttgattt aaaaatcacg attggcacac ggcaatattc gcatagcttt
       61 aacggcaaat acagctcgca ataccttgaa tctgtggtgt ttgataacct gccgcctgtg
      121 ccatttaata tctcagttga gcgtctaacc gaggatagca attcgcaacg cttacaaaac
      181 ggtacaattt ggagtagtta caccgaaatt atcgataccg agtttaccta ccctaattca
      241 gcggttgccg gtatcagttt tgattcggag tattttaata atatcccgac ccgaaactac
      301 ctaattaaag cgaaaaaagt caaagtgcca agcaattatg atccagttaa acgcacttac
      361 accggc
//
LOCUS       DANMBQ010000322          354 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.329, whole genome shotgun sequence.
ACCESSION   DANMBQ010000322 DANMBQ010000000
VERSION     DANMBQ010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.329"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            31..107
                     /locus_tag="PXE92_002817"
     tRNA            31..107
                     /locus_tag="PXE92_002817"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:65..67,aa:Ile,seq:gat)
     gene            164..239
                     /locus_tag="PXE92_002818"
     tRNA            164..239
                     /locus_tag="PXE92_002818"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:197..199,aa:Ala,seq:tgc)
BASE COUNT          107 a           75 c           90 g           82 t
ORIGIN      
        1 aagaagacaa aaaaccgaag gtcatccgtt gggtctgtag ctcaggtggt tagagcgcac
       61 ccctgataag ggtgaggtcg gtggttcaag tccactcaga cccaccactc agaaggcaag
      121 cgaaagcgaa gcgactatga gtgaagaaaa cggaagatga aatggggata tagctcagct
      181 gggagagcgc ctgccttgca cgcaggaggt cagcggttcg atcccgctta tctccaccaa
      241 tcatcgtgac tttatcatca tacctaagat tacaagcggt taaaaatacc ggattatttg
      301 caattttagg tatgatgata ggcgaaagcc attatctttg ttctttaaca atat
//
LOCUS       DANMBQ010000323          338 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.330, whole genome shotgun sequence.
ACCESSION   DANMBQ010000323 DANMBQ010000000
VERSION     DANMBQ010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.330"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..>338
                     /locus_tag="PXE92_002819"
     CDS             <1..>338
                     /locus_tag="PXE92_002819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761985.1"
                     /translation="AVDSLSIGARNLLIDSTYNQHINYNTKMSSITRTVYRGNMLIRL
                     GMLGGAGVAGIVQAPAAQVSNIRQGQEYTLSLNVQGTAGIQKTGLNYVFLMRADGANQ
                     RLATIPVIAS"
BASE COUNT          104 a           79 c           76 g           79 t
ORIGIN      
        1 ctgccgttga ttcactttct atcggtgcaa ggaacttact gatagacagt acttacaacc
       61 aacacatcaa ctacaataca aaaatgtcat caatcacacg cacagtctat cgcggcaata
      121 tgttgatacg actcggaatg cttggtggcg caggtgtggc cggtattgta caagcaccag
      181 ccgctcaagt aagtaatatc agacagggtc aagagtacac acttagcctg aatgtacagg
      241 gtacagccgg catacaaaaa acggggctca actatgtatt cttgatgcgt gctgatgggg
      301 ctaatcaacg gttagcaaca atacctgtta tagccagc
//
LOCUS       DANMBQ010000324          338 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.331, whole genome shotgun sequence.
ACCESSION   DANMBQ010000324 DANMBQ010000000
VERSION     DANMBQ010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.331"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(43..>338)
                     /locus_tag="PXE92_002820"
     CDS             complement(43..>338)
                     /locus_tag="PXE92_002820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5761986.1"
                     /translation="AVENTPEIMEVKFGDGYTQRSPKGLNNLLRAYTGTIKVKKGEHL
                     AVEAFFAKHRGVSPFYFKDPYTQQNKKVVCSSWPAKMVGLNHWEFSVTFKEVP"
BASE COUNT           86 a           70 c           70 g          112 t
ORIGIN      
        1 tggcaaggtc gagtttcatt tgattggata tgctaacagg cattagggta cttccttaaa
       61 ggttacacta aattcccaat ggtttaagcc aaccattttt gcgggccaac tgctacacac
      121 tacctttttg ttttgttgtg tgtacggatc tttaaagtaa aaaggggaaa caccacgatg
      181 tttggcaaaa aatgcctcca ccgctaaatg ttcccccttt ttcactttga ttgtgcctgt
      241 ataggctcgt aataaattgt ttaagccttt gggcgagcgt tgggtataac catcgccgaa
      301 tttgacttcc attatttcag gggtattttc aaccgcta
//
LOCUS       DANMBQ010000325          330 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.332, whole genome shotgun sequence.
ACCESSION   DANMBQ010000325 DANMBQ010000000
VERSION     DANMBQ010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.332"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(<1..233)
                     /locus_tag="PXE92_002821"
     CDS             complement(<1..233)
                     /locus_tag="PXE92_002821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDL5761987.1"
                     /translation="MNELYEKYKDEPSMLVAIADGEGNIGVLEDIFLYKKQLAFSYVT
                     PLERWNWLHQCNLNSYAPAPLSVIEFYIQNGVE"
BASE COUNT           99 a           57 c           43 g          131 t
ORIGIN      
        1 atttccactc cattttgtat ataaaattca atcacagaaa gtggtgctgg tgcataagaa
       61 ttaagattac attgatgtaa ccaattccat ctttctaatg gtgtaacata agagaatgct
      121 aattgctttt tatataaaaa aatatcttct aatactccaa tgttaccttc gccatctgca
      181 atggcaacta gcattgaggg ttcatcttta tatttttcat ataattcatt catattattt
      241 accttctttt aagaattttt ccatatcgga tttgattcgt tgaatatcat gttttcctgg
      301 catctcattc ttatggctac gattttcaga
//
LOCUS       DANMBQ010000326          322 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.denovo.333, whole genome shotgun sequence.
ACCESSION   DANMBQ010000326 DANMBQ010000000
VERSION     DANMBQ010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.denovo.333"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            11..316
                     /locus_tag="PXE92_002822"
     CDS             11..316
                     /locus_tag="PXE92_002822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761988.1"
                     /translation="MSKLNKLLSRKTSRKIIPEQVNFDINLPIYIPLFLSDKTAKIQA
                     VWELEQENGERDAGAVKRNRIQFRYLPEGVHKLTLIVGTPLLSKGSKVYQCLIKVNK"
BASE COUNT          118 a           45 c           60 g           99 t
ORIGIN      
        1 ggaacattct atgtctaagt taaacaaatt attatcgaga aaaacatcgc gtaaaattat
       61 tcctgagcaa gttaattttg acattaactt gcctatctat atcccgctgt ttttatcaga
      121 taagacagcg aaaattcaag cagtatggga gttagaacaa gaaaatggtg agcgtgatgc
      181 tggcgctgta aagcgaaatc gtattcagtt tagatacttg ccagaagggg tacataaatt
      241 aacattaatt gttggtacgc ctttattatc aaaaggaagt aaggtttatc aatgcctaat
      301 taaagttaat aaataatatt aa
//
LOCUS       DANMBQ010000327         7725 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.guided.113, whole genome shotgun sequence.
ACCESSION   DANMBQ010000327 DANMBQ010000000
VERSION     DANMBQ010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7725
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.guided.113"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            complement(247..1539)
                     /locus_tag="PXE92_002823"
     CDS             complement(247..1539)
                     /locus_tag="PXE92_002823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HDL5761989.1"
                     /translation="MGTYIPHREGIIQTIVRNSLTQYQAYASPSQTILDRLEHFAECA
                     DWTKGVVRIRCHDCGHSYFRPFSCKVFHLCPSCDQKRTLLYAEYLAEDLLLDLPHRQF
                     VFTIPKILRPYFKSDKRLFGEVSRLVFSLLSDFFSLAAGQELLCACVVSYQSFGEFAR
                     FHPHWHVLVLEGGFTKYDRFVYLPIGADEGMLKVWQAAIMALFLRKELIDQARVNMLR
                     DWKHSGFSIESETRLFNKADREALGQYVVRGATCAEKIQYDPASDTIIWTASPKGFYK
                     GKTETFKGFEFVDQLVAHLPPRRVQLLRRYGVYAGKVRKQWQERPNIYSLAPESWQKG
                     HPRESKIVPAIPQEKPETVQVSDAWSKLRKQSWARLLQKVYEVDPFVCPKCQGTMSVV
                     AIIEDPKELAKIINWAKQQEREQPVAVCARSPPELALV"
     gene            1702..2547
                     /gene="sul2"
                     /locus_tag="PXE92_002824"
     CDS             1702..2547
                     /gene="sul2"
                     /locus_tag="PXE92_002824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001043260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /protein_id="HDL5761990.1"
                     /translation="MEYTSKSQIARNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQA
                     RKLMAEGADVIDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQ
                     AYALSRGVAYLNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHI
                     AAFFDARIAALTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLL
                     SVSRKSFLRALTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKE
                     TARIR"
     gene            2716..3519
                     /locus_tag="PXE92_002825"
                     /note="aph(3'')-Ib"
     CDS             2716..3519
                     /locus_tag="PXE92_002825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3'')-Ib"
                     /protein_id="HDL5761991.1"
                     /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASR
                     RGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAW
                     PSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLL
                     ARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLA
                     LMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG"
     gene            3519..4355
                     /locus_tag="PXE92_002826"
     CDS             3519..4355
                     /locus_tag="PXE92_002826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="HDL5761992.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK
                     PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE
                     IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM
                     SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP
                     RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT
                     SY"
     gene            4691..5506
                     /locus_tag="PXE92_002827"
     CDS             4691..5506
                     /locus_tag="PXE92_002827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032492145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3')-Ia"
                     /protein_id="HDL5761993.1"
                     /translation="MSHIQRETSCSRPRLNSNLDADLYGYKWARDNVGQSGATIYRLY
                     GKPDAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTALP
                     GKTAFQVLEEYPDSGENIVDALAAFLRRLHSIPVSNCPFNSDRVFRLAQAQSRMNNGL
                     VDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVG
                     RVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
     gene            complement(5660..6253)
                     /locus_tag="PXE92_002828"
                     /pseudo
     CDS             complement(5660..6253)
                     /locus_tag="PXE92_002828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001201005.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA--6-aminopenicillanic acid
                     acyl-transferase"
     gene            complement(6254..6403)
                     /locus_tag="PXE92_002829"
                     /pseudo
     CDS             complement(6254..6403)
                     /locus_tag="PXE92_002829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000238497.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
     gene            6423..6929
                     /locus_tag="PXE92_002830"
     CDS             6423..6929
                     /locus_tag="PXE92_002830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5761994.1"
                     /translation="MAYQTLKSTQSQTQEKSDERAKQLLGSRVVEQVSESERENGNGR
                     EISSGSRQTSNEQRTGYSGNSSQEYRQISKSGERLTNKTSENALIEPTRPIKNKNGSK
                     VAPTPTNTPKTQNNANSNLLSSEQYRQTMEFLREFNDRLEQIAQNILENQLKALRTKA
                     KPSHCQWY"
     gene            6907..7479
                     /locus_tag="PXE92_002831"
                     /pseudo
     CDS             6907..7479
                     /locus_tag="PXE92_002831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484607.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
     gene            7492..>7725
                     /locus_tag="PXE92_002832"
     CDS             7492..>7725
                     /locus_tag="PXE92_002832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03751 family conjugal transfer lipoprotein"
                     /protein_id="HDL5761995.1"
                     /translation="MKALYCIMMSALLITGCTTSTEELLPANGSTMRDIWDKGAGNND
                     LHLYRSQQGRTLDPVDYIPNTEQRAYTRTAENEI"
BASE COUNT         1915 a         1938 c         1985 g         1887 t
ORIGIN      
        1 tttcgggtca aaattcggtt ttttccccga actacgactg ttttcgcacc ccgaacaact
       61 aatccaatca gaattttccg gcaacgccga ctccaagaag tgtaattcca gtctatttct
      121 gccgtcaacc cctgattcgc gttaatgcga caaagctcaa acacataact cccccacgaa
      181 gccatataaa ctccgatttc gaggtgttat cctgttccgc ataaacttcg tttttgggta
      241 ttatacctac accaaagcaa gctcaggagg tgaacgagca cagacggcca ctggctgctc
      301 ccgttcctgc tgctttgccc agttaataat cttggcaagc tccttgggat cctcgattat
      361 cgccacaacc gacattgttc cctggcattt tgggcaaaca aacgggtcaa cttcatagac
      421 tttctgtaac aaccgtgccc aactttgttt gcgcaacttg gaccaggcat cggaaacttg
      481 gacagtttcc ggtttctcct gaggtatggc tggaacaatt ttggattcgc gtggatgacc
      541 tttttgccaa ctttctgggg ccaggctata aatattgggg cgctcttgcc actgcttgcg
      601 gactttgccc gcatatacgc catagcgacg aagcaattga acccgccttg gtggtaaatg
      661 ggccacaagc tggtcgacga attcaaagcc tttgaaggtc tctgtttttc ctttgtagaa
      721 tccctttggg ctagctgtcc agattatcgt gtcggaagct ggatcatact gaattttttc
      781 tgcacaggta gcgccgcgaa cgacatactg gccgagggct tctcgatcgg ccttgttgaa
      841 tagtctggtt tcgctctcga tgctaaagcc ggaatgcttc cagtctctga gcatgttcac
      901 tcgggcttga tctattagtt cctttcgcag aaacaaagcc ataatcgctg cttgccagac
      961 cttgagcatc ccttcgtcgg ctccaattgg taaatataca aagcggtcgt acttggtgaa
     1021 cccaccttcc agaaccagaa catgccagtg cgggtggaat cgagcgaatt caccaaacga
     1081 ctgatagctg acaacacagg cacatagtag ttcttgaccg gctgccaggg agaaaaaatc
     1141 agaaagcaag gagaatacca gcctggacac ctcgccaaac agtcgcttat ccgatttaaa
     1201 gtatggtctg agaatcttgg gaatcgtaaa aacaaattgc cgatgcggta gatcaaggag
     1261 caaatcctcg gccaggtatt cagcatagag taaggtccgt ttttggtcac aggatgggca
     1321 aaggtggaaa accttgcacg aaaatggcct gaagtacgaa tgtccacaat catggcaacg
     1381 tattcgaaca acacccttgg tccaatcggc acattcagca aaatgctcaa ggcggtcaag
     1441 gatagtttgc gatggacttg cgtaggcttg gtactgggtt agagaattgc ggactatggt
     1501 ctggattatc ccttcccgat ggggaatgta agttcccata cctatacata cgcaggaaaa
     1561 cgatcatttg cttgcaattg cgaagaaaat aatggaaaat gtggactggc gccacctaac
     1621 aaccggttcg agcggactca cgggacaagc ccgttcgcag ctcaaccgaa agttaggttg
     1681 acgccttcgg cgcggaggaa aatggaatat acaagtaaat cacaaatagc tcgaaataaa
     1741 tcgctcatca ttttcggcat cgtcaacata acctcggaca gtttctccga tggaggccgg
     1801 tatctggcgc cagacgcagc cattgcgcag gcgcgtaagc tgatggccga gggggcagat
     1861 gtgatcgacc tcggtccggc atccagcaat cccgacgccg cgcctgtttc gtccgacaca
     1921 gaaatcgcgc gtatcgcgcc ggtgctggac gcgctcaagg cagatggcat tcccgtctcg
     1981 ctcgacagtt atcaacccgc gacgcaagcc tatgccttgt cgcgtggtgt ggcctatctc
     2041 aatgatatcc gcggttttcc agacgctgcg ttctatccgc aattggcgaa atcatctgcc
     2101 aaactcgtcg ttatgcattc ggtgcaagac gggcaggcag atcggcgcga ggcacccgct
     2161 ggcgacatca tggatcacat tgcggcgttc tttgacgcgc gcatcgcggc gctgacgggt
     2221 gccggtatca aacgcaaccg ccttgtcctt gatcccggca tggggttttt tctgggggct
     2281 gctcccgaaa cctcgctctc ggtgctggcg cggttcgatg aattgcggct gcgcttcgat
     2341 ttgccggtgc ttctgtctgt ttcgcgcaaa tcctttctgc gcgcgctcac aggccgtggt
     2401 ccgggggatg tcggggccgc gacactcgct gcagagcttg ccgccgccgc aggtggagct
     2461 gacttcatcc gcacacacga gccgcgcccc ttgcgcgacg ggctggcggt attggcggcg
     2521 ctgaaagaaa ccgcaagaat tcgttaactg cacattcggg atatttctct atattcgcgg
     2581 ttcagcaggc atgtcccctt tgagggcgac ccgacgacag gataatcgac cttatggtgc
     2641 gcaaatattt cggcacagat ggtattcgtg gcaaagccac ctccgcgctt catcagaaaa
     2701 ctgaaggaac ctccattgaa tcgaactaat attttttttg gtgaatcgca ttctgactgg
     2761 ttgcctgtca gaggcggaga atccggtgat tttgtttttc gacgtggtga cgggcatgcc
     2821 ttcgcgaaaa tcgcacctgc ttcccgccgc ggtgagctcg ctggagagcg tgaccgcctc
     2881 atttggctca aaggtcgagg tgtggcttgc cccgaggtga tcaactggca ggaggaacag
     2941 gagggtgcat gcttggtgat aacggcaatt ccgggagtac cggcggctga tctgtctgga
     3001 gcggatttgc tcaaagcgtg gccgtcaatg gggcagcaac ttggcgctgt tcacagccta
     3061 tcggttgatc aatgtccgtt tgagcgcagg ctgtcgcgaa tgttcggacg cgccgttgat
     3121 gtggtgtccc gcaatgccgt caatcccgac ttcttaccgg acgaggacaa gagtacgccg
     3181 cagctcgatc ttttggctcg tgtcgaacga gagctaccgg tgcggctcga ccaagagcgc
     3241 accgatatgg ttgtttgcca tggtgatccc tgcatgccga acttcatggt ggaccctaaa
     3301 actcttcaat gcacgggtct gatcgacctt gggcggctcg gaacagcaga tcgctatgcc
     3361 gatttggcac tcatgattgc taacgccgaa gagaactggg cagcgccaga tgaagcagag
     3421 cgcgccttcg ctgtcctatt caatgtattg gggatcgaag cccccgaccg cgaacgcctt
     3481 gccttctatc tgcgattgga ccctctgact tggggttgat gttcatgccg cctgtttttc
     3541 ctgctcattg gcacgtttcg caacctgttc tcattgcgga caccttttcc agcctcgttt
     3601 ggaaagtttc attgccagac gggactcctg caatcgtcaa gggattgaaa cctatagaag
     3661 acattgctga tgaactgcgc ggggccgact atctggtatg gcgcaatggg aggggagcag
     3721 tccggttgct cggtcgtgag aacaatctga tgttgctcga atatgccggg gagcgaatgc
     3781 tctctcacat cgttgccgag cacggcgact accaggcgac cgaaattgca gcggaactga
     3841 tggcgaagct gtatgccgca tctgaggaac ccctgccttc tgcccttctc ccgatccggg
     3901 atcgctttgc agctttgttt cagcgggcgc gcgatgatca aaacgcaggt tgtcaaactg
     3961 actacgtcca cgcggcgatt atagccgatc aaatgatgag caatgcctcg gaactgcgtg
     4021 ggctacatgg cgatctgcat catgaaaaca tcatgttctc cagtcgcggc tggctggtga
     4081 tagatcccgt cggtctggtc ggtgaagtgg gctttggcgc cgccaatatg ttctacgatc
     4141 cggctgacag agacgacctt tgtctcgatc ctagacgcat tgcacagatg gcggacgcat
     4201 tctctcgtgc gctggacgtc gatccgcgtc gcctgctcga ccaggcgtac gcttatgggt
     4261 gcctttccgc agcttggaac gcggatggag aagaggagca acgcgatcta gctatcgcgg
     4321 ccgcgatcaa gcaggtgcga cagacgtcat actagatatc aagcgactta tcctatcccc
     4381 tgggaacaca tcaatcttac cggagaatat cgttggccaa agccttagcg taggatttcg
     4441 ccctctcccg caaacgaccc ctttattgta ggtgggccag ttggtgattt tgaacttttg
     4501 ctttgccacg gaacggtctg cgttgtcggg aagatgcgtg atctgatcct tcaactcagc
     4561 aaaagttcga tttattcaac aaatccacgt tgtgtctcaa aatctcttat gttatattgc
     4621 acaagataaa aatatatcat catgaacaat aaaactgtct gcttacataa acagtaatac
     4681 aaggggtgtt atgagccata ttcaacggga aacgtcttgc tcgaggccgc gattaaattc
     4741 caacctggat gctgatttat atgggtataa atgggctcgc gataatgtcg ggcaatcagg
     4801 tgcgacaatc tatcgattgt atgggaagcc cgatgcgcca gagttgtttc tgaaacatgg
     4861 caaaggtagc gttgccaatg atgttacaga tgagatggtc agactaaact ggctgacggc
     4921 atttatgcct cttccgacca tcaagcattt tatccgtact cctgatgatg catggttact
     4981 caccactgcg ctccccggga aaacagcatt ccaggtatta gaagaatatc ctgattcagg
     5041 tgaaaatatt gttgatgcgc tggcagcgtt cctgcgccgg ttgcattcga ttcctgttag
     5101 taattgtcct tttaacagcg atcgcgtatt tcgtctcgct caggcgcaat cacgaatgaa
     5161 taacggtttg gttgatgcga gtgattttga tgacgagcgt aatggctggc ctgttgaaca
     5221 agtctggaaa gaaatgcata agcttttgcc attctcaccg gattcagtcg tcactcatgg
     5281 tgatttctca cttgataacc ttatttttga cgaggggaaa ttaataggtt gtattgatgt
     5341 tggacgagtc ggaatcgcag accgatacca ggatcttgcc atcctatgga actgcctcgg
     5401 tgaattttct ccttcattac agaaacggct ttttcaaaaa tatggtattg ataatcctga
     5461 tatgaataaa ttgcagtttc atttgatgct cgatgagttt ttctgatagt tagtctttgt
     5521 agagacacaa acctgaaatt ccggacaccg cgcttcagga catctccctg gacgccgata
     5581 tctggcagta tccggacggt actatcgaac gccgggccaa cggtactccc ctgcccttta
     5641 tgactgacga ccggctattt cacccacgca cttctccatg aaatttagca tcgtcgcggt
     5701 taatgtcgaa aatttgccac ctgacgtggt tggcatcgag ggtgaaaact gccgtggcga
     5761 gggtgttctc ctcatccgga tcgtcggcag ccagccggta aattggcagt tctgcgtcat
     5821 gggtatctga gagaatggtt tttgccgccg cggcgtcaaa cggaggttgc gtttcccgcc
     5881 actgcacgag gcgtaactgc cgcgacgctg aactgtcggt aacgatctgc tcaacgccag
     5941 ccagtgccgc atgcaccaga tggttggcat gcccggttac cgtcgtcagg ggtagaacgg
     6001 aacagccttg accggtggcc tcaacgctga acagccgcgc atcgcccagc tgcccgagcg
     6061 tatggtgaaa cgccccggat cgcggctggc cggtaagtat agtgatggcc tcgtcgaggg
     6121 tgttcgcatt cagcgaggcg cgagccagga tctgacgcgg taatccctgc ggacgataca
     6181 ctgcacggat gttattcacc gtgttaacga tacctttttc atttaccgca aaggtgtggc
     6241 cgcaaatcga ccccttgggt ggcagtccga acagcgcccg atcatggtcg cgctctaggt
     6301 agctatccaa cccatcgagc aggcgctgtt ctggccactc gccgctttca accttgccga
     6361 gtatccacgc gcctaccagc accttgcgcc gggtgtcctc cttggcgtat aacgagcaag
     6421 ttttggctta ccaaacctta aaatccacac aatcacagac acaggaaaaa tcagatgaac
     6481 gagcaaaaca actcttgggt tcaagagtgg ttgaacaagt cagcgaaagc gagcgagaga
     6541 atggcaacgg acgagaaatt tcgtcaggaa gtcgccaaac gagcaacgaa cagcggacag
     6601 gatattcagg caattctagc caagaatatc gccaaatatc aaaatcaggc gaaagattaa
     6661 ctaataaaac gtctgaaaac gctctcatag agcctacaag acctatcaaa aataaaaatg
     6721 gtagtaaggt agcacccaca ccaacaaaca cgcctaaaac gcaaaataac gcaaattcta
     6781 atctattgtc atcagaacag tatcggcaga ctatggagtt tttgcgagaa tttaacgacc
     6841 gattggagca aatcgcccaa aatatcctag aaaatcagct aaaagcattg agaactaagg
     6901 ctaaaccatc tcattgccaa tggtattgaa ttacttgatg tagaaggtgc gattgtttcg
     6961 ggtacagcta ctggcgactg gactctatct tgtgtacgag gcgatgtaaa aagtatgacc
     7021 tttgtgttca atgatgggcg tattgtcagc acgactaaca aagggaatag tgagaatatc
     7081 ggttggttat ctgatagttc aggcattcct tgtgttcccg gggagagaaa aacaaatgca
     7141 ccagaatatt taggcacaaa tttcttctta gcggctgcca gtgccgcagc ccaagggttt
     7201 tcacaatcac aaacaacgac agtagttgat ggcaatagtg ttgttggagc tgttaccggt
     7261 gatcaaggta agttcatctt agggcaagcc atcggcggtg gtttaaaaga atccgccgac
     7321 tggtttagaa agcgttttgc tgaaaacttt gatgctgtct atgtaccacc tggacatcgt
     7381 gtcgctattc atatcgagaa agagattgag atcgattaca actccaaagg acgtaaagtg
     7441 aaatacggaa acacatcaac taatacacaa cttgattaaa aggaacaaac aatgaaagct
     7501 ttatattgca taatgatgag tgccttattg ataacaggtt gcacaacttc aactgaagaa
     7561 ttattacccg ctaacggcag tacgatgcga gatatttggg ataaaggagc aggtaataac
     7621 gatctacact tataccgttc acaacaagga cgaacactcg atcctgtcga ttatattcct
     7681 aacactgagc aacgagccta tacccgtacg gcagaaaatg aaatt
//
LOCUS       DANMBQ010000328         3932 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.guided.179, whole genome shotgun sequence.
ACCESSION   DANMBQ010000328 DANMBQ010000000
VERSION     DANMBQ010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3932)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.guided.179"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            274..720
                     /locus_tag="PXE92_002833"
                     /pseudo
     CDS             274..720
                     /locus_tag="PXE92_002833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001747810.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3363 domain-containing protein"
     gene            997..2211
                     /gene="floR"
                     /locus_tag="PXE92_002834"
     CDS             997..2211
                     /gene="floR"
                     /locus_tag="PXE92_002834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000214125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloramphenicol/florfenicol efflux MFS
                     transporter FloR"
                     /protein_id="HDL5761996.1"
                     /translation="MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGIL
                     NTTPAMIQLTLSLYMVMLGVGQVIFGPLSDRIGRRPILLAGATAFVIASLGAAWSSTA
                     PAFVAFRLLQAVGASAMLVATFATVRDVYANRPEGVVIYGLFSSVLAFVPALGPIAGA
                     LIGEFLGWQAIFITLAILAMLALLNAGFRWHETRPLDQVKTRRSVLPIFASPAFWVYT
                     VGFSAGMGTFFVFFSTAPRVLIGQAEYSEIGFSFAFATVALVMIVTTRFAKSFVARWG
                     IAGCVARGMALLVCGAVLLGIGELYGSPSFLTFILPMWVVAVGIVFTVSVTANGALAE
                     FDDIAGSAVAFYFCVQSLIVSIVGTLAVALLNSDTAWPVICYATAMAVLVSLGLVLLR
                     LRGAATEKSPVV"
     gene            2239..2544
                     /locus_tag="PXE92_002835"
     CDS             2239..2544
                     /locus_tag="PXE92_002835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001255015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5761997.1"
                     /translation="MRRTNHRNLVNVGILSGRIPLISLVQFIAVAEHLNFRHAAKALG
                     ISQSSVSARVKALEDNLGVLLFERHARGVRLTDAGRHFMERVTAGVDQLDHAVKTAE"
     gene            2656..>3932
                     /locus_tag="PXE92_002836"
     CDS             2656..>3932
                     /locus_tag="PXE92_002836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91-like element ISVsa3 family transposase"
                     /protein_id="HDL5761998.1"
                     /translation="MPHVAARTASRDRDTGRYQSHRPEQTLLYQIVDEYYPAFAALMA
                     EQGKELPGYVQREFEEFLQCGRLEHGFLRVRCESCHAEHLVAFSCKRRGFCPSCGARR
                     MAESAALLVDEVLPEQPMRQWVLSFPFQLRFLFASRPEIMGWVLGIVYRVIATHLVKK
                     AGHTHQVAKTGAVTLIQRFGSALNLNVHFHMLFLDGVYVEQSHGSARFRWVKAPTSPE
                     LTQLTHTIAHRVGRYLERQGLLERDVENSYLASDAVDDDPMTPLLGHSITYRIAVGSQ
                     AGRKVFTLQTLPTSGDPFGDGIGKVAGSSLHAGVAARADERKKLERLCRYISRPAVSE
                     KRLSLTRGGNVRYQLKTPYRDGTTHVIFEPLDFIARLAALVPKPRVNLTRFHGVFAPN
                     SRHRALVTPAKRGRGNKVRVADEPATPAQRRAS"
BASE COUNT          735 a         1144 c         1210 g          843 t
ORIGIN      
        1 ttggacttgg gtgaaaaggg cgtttattct tcctatacgt gccgcgttcc aggcggcgac
       61 tatgagggct atgtcgatgc ccatgtgcgc cggctggagg cgctacgccg ggccggtatc
      121 gtcgagcgga tcgacgccga ccaatggcgc atccccgatg atctggtcag ccgtgccgcc
      181 gcccatgacg ccggccgaga cagtcaggcc agcgttcgcg tcctttcccc ggtcgatctg
      241 aacaaacaga tcggatcgga cggcgcgacc tggctggacc ggcggctgat ccacggcgag
      301 acggccgacc ttgcgccaac cggcttcggg caacaagtcc gcgaagccat ggaccagcgc
      361 cgcgagcacc atatcgaaca gggcgacgcc acccgcagcc gggacagccg cgtcttctac
      421 cggcgcaacc ttctcgccat cctgcgggag cgcgaggtag ccggcgtcgg atcggatatg
      481 gctttgagta agggcctgcc gttccgcgcc gccacggacg gcgagagcgt cagcggcaag
      541 tttaccggaa ccgtgcatct atcgagcggc aagttcgccg tggtcgagaa atcccatgag
      601 ttcacccttg tcccgtggcg gccgatcatc gaccgccaac tcggccgcga ggttatgggc
      661 atcgtgcagg gcgggtcggt gtcgtggcag ttagggcggc agagggggct ggaacgctga
      721 gtgcgcccat gccgcattgc gaagcaaaag ataatcggat aaaatgtagc aattcatatt
      781 cgtaagcgtg gagtaatcag atgggaaatt ccaagtcagc agacaagtaa gccgcaacaa
      841 ccagtattgt tgttgcggcg ctctgtaagg ctagtctcat ctgattgctg acgagcagac
      901 gtcgcccggt attccttaat cgagggttga ttcgtcatga ccaccacacg ccccgcgtgg
      961 gcctaaacaa atatcaatcg caaggagatc atattcatga ccaccacacg ccccgcgtgg
     1021 gcctatacgc tgccggcagc actgctgctg atggctcctt tcgacatcct cgcttcactg
     1081 gcgatggata tttatctccc tgtcgttcca gcgatgcccg gcatcctgaa cacgacgccc
     1141 gctatgatcc aactcacgtt gagcctctat atggtgatgc tcggcgtggg ccaggtgatt
     1201 tttggtccgc tctcagacag aatcgggcga cggccaattc tacttgcggg cgcaacggct
     1261 ttcgtcattg cgtctctggg agcagcttgg tcttcaactg caccggcctt tgtcgctttc
     1321 cgtctacttc aagcagtggg cgcgtcggcc atgctggtgg cgacgttcgc gacggttcgc
     1381 gacgtttatg ccaaccgtcc tgagggtgtc gtcatctacg gccttttcag ttcggtgctg
     1441 gcgttcgtgc ctgcgctcgg ccctatcgcc ggagcattga tcggcgagtt cttgggatgg
     1501 caggcgatat tcattacttt ggctatactg gcgatgctcg cactcctaaa tgcgggtttc
     1561 aggtggcacg aaacccgccc tctggatcaa gtcaagacgc gccgatctgt cttgccgatc
     1621 ttcgcgagtc cggctttttg ggtttacact gtcggcttta gcgccggtat gggcaccttc
     1681 ttcgtcttct tctcgacggc tccccgtgtg ctcataggcc aagcggaata ttccgagatc
     1741 ggattcagct ttgccttcgc cactgtcgcg cttgtaatga tcgtgacaac ccgtttcgcg
     1801 aagtcctttg tcgccagatg gggcatcgca ggatgcgtgg cgcgtgggat ggcgttgctt
     1861 gtttgcggag cggtcctgtt ggggatcggc gaactttacg gctcgccgtc attcctcacc
     1921 ttcatcctac cgatgtgggt tgtcgcggtc ggtattgtct tcacggtgtc cgttaccgcg
     1981 aacggcgctt tggcagagtt cgacgacatc gcgggatcag cggtcgcgtt ctacttctgc
     2041 gttcaaagcc tgatagtcag cattgtcggg acattggcgg tggcactttt aaacagtgac
     2101 acagcgtggc ccgtgatctg ttacgccacg gcgatggcgg tactggtttc gttggggctg
     2161 gtgctccttc ggctccgtgg ggctgccacc gagaagtcgc cagtcgtcta accgacgact
     2221 ggtagcaggc ccgctccgat gcggcgcact aaccatcgaa acctcgtgaa tgtcggtatc
     2281 ctgtctggca ggataccgct catttccctt gttcagttca tcgccgtcgc cgagcatctg
     2341 aattttcggc atgcggccaa ggcacttggt atcagccagt cgagcgtcag cgcgcgtgtg
     2401 aaagcgctgg aggataacct tggtgtcctg ctatttgagc gccatgcgcg gggcgttcgg
     2461 ctaacagacg caggcaggca cttcatggag cgtgtcacgg cgggtgtcga tcaactcgat
     2521 cacgcagtga agaccgcgga gtgacgggca ctggctggca atgtctagca acggcaggca
     2581 tttcggctga gggtaaaaga actttccgct aagcgataga ctgtatgtaa acacagtatt
     2641 gcaaggacgc ggaacatgcc tcatgtggcg gccaggacgg ccagccggga tcgggatact
     2701 ggtcgttacc agagccaccg acccgagcaa acccttctct atcagatcgt tgacgagtat
     2761 tacccggcat tcgctgcgct tatggcagag cagggaaagg aattgccggg ctatgtgcaa
     2821 cgggaatttg aagaatttct ccaatgcggg cggctggagc atggctttct acgggttcgc
     2881 tgcgagtctt gccacgccga gcacctggtc gctttcagct gtaagcgtcg cggtttctgc
     2941 ccgagctgtg gggcgcggcg gatggccgaa agtgccgcct tgctggttga tgaagtactg
     3001 cctgaacaac ccatgcgtca gtgggtgttg agcttcccgt ttcagctgcg tttcctgttt
     3061 gccagccggc ccgagatcat ggggtgggtg ctgggcatcg tttaccgcgt cattgccacg
     3121 cacctggtca agaaagcggg ccatacccac caagtggcca agacgggcgc ggtcaccctg
     3181 atccagcgtt ttggatcggc gctcaatctg aatgttcact tccacatgct gtttctcgac
     3241 ggtgtgtatg tcgagcaatc ccacggctca gcgcgtttcc gctgggtcaa ggcgccgacc
     3301 agcccagagc tcacccagct gacgcacacc atcgcccacc gggtgggtcg ctatctggaa
     3361 cggcaaggcc tgctggaacg ggatgtcgaa aacagctatc tggcctcgga tgcggtggat
     3421 gacgacccga tgacacccct gctggggcac tcgatcactt accgtatcgc tgtcggttca
     3481 caggcggggc gaaaggtgtt cactttgcaa actctgccga ccagtggtga tccgttcggt
     3541 gacgggattg gcaaggtagc cgggtccagc ctgcacgccg gcgtggcggc cagggccgat
     3601 gaacgcaaga agctcgaacg gctgtgccgg tacatcagcc gcccggcggt atccgagaag
     3661 cggctgtcgt taacacgagg cggcaacgtg cgctaccagc tcaagacgcc gtaccgggac
     3721 ggcaccacgc acgtcatttt cgaaccattg gatttcattg caaggctggc cgccctggta
     3781 ccgaagccca gagtcaacct aacccgcttc cacggggtgt tcgcacccaa cagtcggcac
     3841 cgggcgttgg tcacgccggc aaaacggggc aggggcaaca aggtcagggt ggctgatgaa
     3901 ccggcaacac cagcacaacg gcgagcgtcg at
//
LOCUS       DANMBQ010000329         3546 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.guided.188, whole genome shotgun sequence.
ACCESSION   DANMBQ010000329 DANMBQ010000000
VERSION     DANMBQ010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3546)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3546)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3546
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.guided.188"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            47..1249
                     /gene="tet(H)"
                     /locus_tag="PXE92_002837"
     CDS             47..1249
                     /gene="tet(H)"
                     /locus_tag="PXE92_002837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(H)"
                     /protein_id="HDL5761999.1"
                     /translation="MNKSIIIILLITVLDAIGIGLIMPVLPTLLNEFVSENSLATHYG
                     VLLALYATMQVIFAPILGRLSDKYGRKPILLFSLLGAALDYLLMAFSTTLWMLYIGRI
                     IAGITGATGAVCASAMSDVTPAKNRTRYFGFLGGAFGVGLIIGPMLGGLLGDISAHMP
                     FIFAAISHSILLILSLLFFRETQKREALVANRTPENQTASNTVTVFFKKSLYFWLATY
                     FIIQLIGQIPATIWVLFTQYRFDWNTTSIGMSLAVLGVLNIFFQAIVAGKLAQKWGEK
                     TTIMISMSIDMMGCLLLAWIGHVWVILPALICLAAGGMGQPALQGYLSKSVDDNAQGK
                     LQGTLVSLTNITGIIGPLLFAFIYSYSVAYWDGLLWLMGAILYAMLLITAYFHQRKTT
                     PKAVISTP"
     gene            complement(1345..2655)
                     /locus_tag="PXE92_002838"
     CDS             complement(1345..2655)
                     /locus_tag="PXE92_002838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HDL5762000.1"
                     /translation="MSNILNWPDYKVLQVSELEHDYQVHAEVSEPPTQCPHCNHPEIV
                     GFGRRDEVIMDTPVHGRRTGIMLNRRRYRCQSCRKTFLEPVPHKDEKRQMTNRLIQYI
                     ERESLRRTFSSVAEDVGVDEKTVRNIFNDYCERLEKTLNFEMPQWLGIDEIHIIKPRC
                     VITNIQQQTIVDMLDNRNKTTVTRYLSKRTDRDLVRYVAMDMWRPYRQAVETMIPDAT
                     VIIDKFHVVRMANESLERARKAIRSALTPQQRRGLMRDRFVLLKRRHELTDAEYMRFS
                     GWTLNYPEIGQAYELKEAFFEIWDCQTRHQAQEAYYSWLRQITPEMKAHYDPLIKAMG
                     NWHDDIFAYFDHPITNAYTESLNNLIRVVNRVGRGYSFEALRAKILFTEGFQKIKKPR
                     YQRQRIPEGAMGRMPFYGVAEAGPSTNYGADISTLVREIEAGRL"
     gene            complement(2655..2957)
                     /locus_tag="PXE92_002839"
     CDS             complement(2655..2957)
                     /locus_tag="PXE92_002839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5762001.1"
                     /translation="MKIKLYFPDESIATIKRMGLRQMSPETLRWTADHPSSSYGMGAL
                     LRGKSGEILDGKSFAAMVHAFGAWIETDSEDTSRRVHNALVTAATGTEESVKVAKE"
     gene            complement(2998..3186)
                     /locus_tag="PXE92_002840"
     CDS             complement(2998..3186)
                     /locus_tag="PXE92_002840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5762002.1"
                     /translation="MSYDANDALNEIEEALSELERVAEDLINNNPNKESELRGQGVHQ
                     ATKHLRFRIRNIRRGEAI"
BASE COUNT          846 a          828 c          830 g         1042 t
ORIGIN      
        1 agatatatta cacccactct atcactgata gatttttagg atctcaatga ataaatcaat
       61 tattattata ctgctgatca ccgtattaga tgccattggt atcgggctta tcatgccagt
      121 actccctact ctattaaatg aatttgtcag tgaaaattca ctggcaaccc attacggtgt
      181 gctattagcg ctctatgcta ccatgcaggt tatttttgct cctattctag gacgactgtc
      241 tgataaatac ggcagaaaac ccatcttgct gttttccctt ttaggcgcgg cactcgacta
      301 tcttttaatg gcattctcaa ccacactttg gatgctctat attgggcgca tcattgcggg
      361 gatcacaggc gcaacaggtg ccgtatgtgc atcagcgatg agtgatgtga ctcccgctaa
      421 aaatcgaact cgctattttg gtttcttagg tggtgctttt ggtgttggcc ttattatcgg
      481 cccaatgcta gggggattat taggtgatat cagtgctcat atgccattta tttttgccgc
      541 tatttcacac tcgatattat taatactctc tttgctcttt ttccgagaaa cacaaaaaag
      601 agaagcgctt gttgccaata ggacacctga aaaccaaact gcctcaaata cagtcactgt
      661 tttttttaag aaaagcctct acttttggtt agcaacctat tttattatcc agcttatcgg
      721 gcaaattcct gccaccatct gggtgctgtt tacacaatat cgttttgatt ggaacacaac
      781 ttctatcggt atgtctttgg cggttctggg tgtattaaat attttctttc aggcgattgt
      841 cgctgggaaa ttggcacaaa aatggggcga aaaaaccacc attatgatca gtatgtctat
      901 tgatatgatg ggctgtttat tattagcgtg gataggccac gtttgggtca tcttaccagc
      961 attaatttgc ttagcggcag gaggtatggg gcaacccgca ttacaaggtt atttatcaaa
     1021 atctgtcgat gataatgcgc aagggaaatt acaaggtact ctggtgagcc taaccaatat
     1081 taccgggatc attggtcccc ttttatttgc ctttatttat agttatagcg tcgcttattg
     1141 ggatggtctg ttatggctga tgggggcaat actttatgct atgttgctta ttaccgctta
     1201 ttttcaccaa agaaaaacca cacctaaagc tgttatttca accccttaat actagaaatt
     1261 ataaagatca taaaagtcct gtccgctctt aataacgttg ataggacttt atttgggtat
     1321 ccggattaca gggttgaaac agggctataa acgccccgcc tcaatctccc gcaccagtgt
     1381 tgatatgtca gcgccgtagt tagtggatgg ccccgcttcg gcaacgccat agaacggcat
     1441 cctgcccata gcgccctcgg gtatccgttg acgctgatag cgtggcttct tgatcttctg
     1501 gaagccctca gtaaacagga tcttggctcg cagcgcttca aagctgtagc cacggccaac
     1561 acgattaaca acacgaatca ggttgttcag tgactcggtg taggcgttgg taatggggtg
     1621 gtcgaagtaa gcgaaaatgt catcgtgcca gttgcccatc gctttgataa gcgggtcata
     1681 gtgggctttc atttccggcg taatctgtcg cagccaagag taatatgcct cctgtgcctg
     1741 gtgccgggtc tgacagtccc aaatctcgaa aaaggcttct ttcagttcgt aggcttggcc
     1801 aatctcaggg taattcaatg tccagcctga aaaacgcatg tattcggcat ctgtcagctc
     1861 gtgacggcgt ttcagtagga caaacctatc tcgcatcaac ccacggcgct gctgtggcgt
     1921 cagggcgctt ctgatggctt ttctggcgcg ttccagtgat tcgttcgcca tcctgacaac
     1981 gtggaacttg tcgatgatca ccgtggcgtc aggaatcatg gtttctactg cttgccggta
     2041 cggcctccac atatccattg ccacgtagcg caccaggtcg cggtcagtgc gtttgctcag
     2101 gtagcgggtg acggtggttt tattgcggtt atccagcatg tccacaatgg tctgctgctg
     2161 aatgttggtg atcacgcagc ggggtttgat gatgtggatt tcgtcgatac ccaaccactg
     2221 cggcatttca aaattgagcg tcttttcgag gcgttcacaa tagtcgttga aaatgttacg
     2281 gacggtcttt tcatcgacgc ccacatcctc ggcaacactg gagaacgtgc ggcgcaggct
     2341 ctcgcgctcg atgtactgga tcaggcggtt ggtcatctgc cgcttttcgt ctttgtgcgg
     2401 tacaggctcc agaaacgtct ttcggcaaga ctggcagcga tagcgacggc ggttaagcat
     2461 gatgccggta cgccttccgt ggacgggtgt atccatgatc acctcatcac ggcgaccaaa
     2521 gccgacgatt tcaggatgat tgcagtgggg gcactgcgta ggcggttcgg aaacttcggc
     2581 gtgtacctgg taatcgtgct ccagttcgga tacctggagc actttgtaat caggccagtt
     2641 gaggatattc gacattactc ctttgccacc ttaaccgatt cctcggtgcc agtggcagca
     2701 gtgactagcg cgttatgaac tcgacgactg gtatcttcac tgtctgtttc aatccacgcg
     2761 ccaaaggcat gcaccattgc agcaaaagac ttcccatcaa ggatttcacc agacttgcct
     2821 ctgagcaaag cgcccatacc atagctgctt gacggatgat cggcagtcca cctgagagtc
     2881 tcgggagaca tttggcgaag ccccattcgc tttatcgtgg cgatagactc gtccggaaaa
     2941 tagagtttga ttttcatgct gacctcgctg aaagccgccc ctagggcggc atgttagtca
     3001 aattgcttcg ccgcggcgga tgttgcgaat acgaaaacgg aggtgctttg tcgcttggtg
     3061 aaccccttgg ccgcgtaatt ctgattcttt attcgggttg ttgttgatta ggtcttcagc
     3121 aaccctttca agctcgctaa gcgcctcttc gatttcattc agcgcatcat ttgcatcgta
     3181 tgacatggct tctatcctgc accaagttcg gcggtgcgcc cgttgggctt atgcccgagc
     3241 cgttgttctc agctcttgaa tctaatatta gggcatctgg ccttttccgt caaccctaaa
     3301 atccggttta tttacaaaat tacgtctagc gcagatcaac cgctaaatcc ggatacccaa
     3361 aatatcatat ataaatacta tcaaattaaa gatgttgtgt cgaaattaat gtaaaaaaag
     3421 agaacccttt taaaataaag ggttctctat atttatatgg gttttatttt acagttttaa
     3481 attatatgta actcagaacg gaatatcatc atcaaagtta tccattggta aatcttgtgg
     3541 atgtgt
//
LOCUS       DANMBQ010000330         2591 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.guided.220, whole genome shotgun sequence.
ACCESSION   DANMBQ010000330 DANMBQ010000000
VERSION     DANMBQ010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2591
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.guided.220"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            116..1591
                     /gene="msr(E)"
                     /locus_tag="PXE92_002841"
     CDS             116..1591
                     /gene="msr(E)"
                     /locus_tag="PXE92_002841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000052512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F type ribosomal protection protein Msr(E)"
                     /protein_id="HDL5762003.1"
                     /translation="MSLIIKARNIRLDYAGRDVLDIDELEIHSYDRIGLVGDNGAGKS
                     SLLKVLNGEIVLAEATLQRFGDFAHISQLGGIEIETVEDRAMLSRLGVSNVQNDTMSG
                     GEETRAKIAAAFSQQVHGILADEPTSHLDLNGIDLLIGQLKAFDGALLVISHDRYFLD
                     MVVDKIWELKDGKITEYWGGYSDYLRQKEEERQHQAVEYELMMKERERLESAVQEKRQ
                     QANRLDNKKKGEKSKNSTESAGRLGHAKMTGTKQRKLYQAAKSMEKRLAALEDIQAPE
                     HLRSIRFRQSSALELHNKFPITADGLSLKFGSRTIFDDANFIIPLGAKVAITGSNGTG
                     KTSLLKMISERADGLTISPKAEIGYFTQTGYKFNTHKSVLSFMQEECEYTVAEIRAVL
                     ASMGIGANDIQKNLSDLSGGEIIKLLLSKMLLGKYNILLMDEPGNYLDLKSIAALETM
                     MKSYAGTIIFVSHDKQLVDNIADIIYEIKDHKIIKTFERDC"
     gene            1647..2531
                     /locus_tag="PXE92_002842"
     CDS             1647..2531
                     /locus_tag="PXE92_002842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mph(E) family macrolide 2'-phosphotransferase"
                     /protein_id="HDL5762004.1"
                     /translation="MTIQDIQSLAEAHGLLITDKMNFNEMGIDFKVVFALDTKGQQWL
                     LRIPRRDGMREQIKKEKRILELVKKHLSVEVPDWRISSTELVAYPILKDNPVLNLDAE
                     TYEIIWNMDKDSPKYITSLAKTLFEIHSIPEKEVRENDLKIMKPSDLRPEIANNLQLV
                     KSEIGISEQLETRYRKWLDNDVLWADFTQFIHGDLYAGHVLASKDGAVSGVIDWSTAH
                     IDDPAIDFAGHVTLFGEESLKTLIIEYEKLGGKVWNKLYEQTLERAAASPLMYGLFAL
                     ETQNESLIVGAKAQLGVI"
BASE COUNT          886 a          421 c          553 g          731 t
ORIGIN      
        1 tatataaagt aaaagtatgc ttaatttata agtatgcttt tagtgcatag tttccagtta
       61 taacttaatt gactagctat taaaaatttc aagagctaaa caggagtaaa taaaaatgag
      121 tttaattatt aaagcgagaa acatacgctt ggattatgct gggcgtgatg ttttggatat
      181 tgatgaattg gaaattcact cttatgaccg tattggtctt gtgggtgata acggagcagg
      241 aaagagtagt ttactcaaag tacttaatgg cgaaattgtt ttagccgaag cgacattaca
      301 gcgttttggt gattttgcac atatcagcca actgggcgga atcgaaatag aaacggtcga
      361 agaccgggca atgttatctc gccttggtgt ttccaatgta caaaacgaca caatgagtgg
      421 cggagaggaa actcgtgcaa aaattgctgc cgcattttcc caacaagtac atggcattct
      481 agcggatgaa ccaaccagcc accttgatct caatggaata gatctactta ttggtcaact
      541 taaagcattt gatggagcat tacttgttat cagtcatgac cgatattttc ttgatatggt
      601 tgtagacaag atatgggagt taaaagacgg taaaattacg gaatattggg gtggttactc
      661 ggattacttg cgtcaaaaag aagaagagcg acaacaccaa gccgtagaat atgagctgat
      721 gatgaaggaa cgggagcgat tagaatctgc tgtgcaagaa aaacgccagc aagctaatcg
      781 attagacaat aagaaaaaag gagaaaaatc caaaaactct accgaaagtg ctggacgact
      841 tgggcatgca aaaatgactg gcaccaagca aagaaaactg tatcaggcag ctaagagtat
      901 ggaaaagcgt ttggctgcat tagaagatat tcaagcacca gagcatttgc gttctattcg
      961 ttttcgtcaa agttcagccc tagaactgca caataagttc ccgattacgg cagatggtct
     1021 gagcttaaaa tttggtagcc gtactatctt tgatgacgct aactttataa taccgcttgg
     1081 cgctaaagtc gctataactg gatcgaatgg aacagggaaa acgtccttgt taaaaatgat
     1141 atcagaacgt gctgatggat taaccatatc tccaaaagct gaaattggct actttacaca
     1201 aacaggatat aaatttaaca cgcataaatc tgtgctctcc tttatgcagg aagagtgcga
     1261 gtacacagtt gcggaaattc gtgcagtatt ggcttcaatg gggatcggag cgaatgatat
     1321 tcaaaaaaac ttatccgact tatcgggagg tgaaatcatc aaactgcttt tatccaaaat
     1381 gcttttagga aaatataata ttttgcttat ggatgaacca ggaaactatc ttgacctaaa
     1441 aagtattgcc gcattagaaa caatgatgaa gtcctatgca ggaactatta tcttcgtatc
     1501 tcatgacaag caattggtcg ataatattgc tgacattatc tacgagatca aagaccacaa
     1561 aatcatcaag acttttgaga gagattgtta atgatagcca atctaatccg aacattaatt
     1621 attgaactct ttaaaggaaa ttaaaaatga caattcaaga tattcaatca cttgctgaag
     1681 cacacggctt gttgattacg gacaaaatga atttcaatga aatgggcatt gattttaagg
     1741 tcgtttttgc tcttgataca aaggggcaac aatggttgct gcgtattcct cgtcgtgatg
     1801 gcatgaggga acaaatcaag aaagaaaaac gcattttaga attggtaaaa aaacatcttt
     1861 ctgtagaggt tcctgattgg agaatttcat ctacagaatt agtggcttat cccatactta
     1921 aagataatcc tgttttaaat ttggatgctg aaacctatga aataatttgg aatatggaca
     1981 aagatagccc gaaatacata acatctttgg caaaaacctt atttgaaatc catagtattc
     2041 ctgaaaaaga agttcgggaa aatgatttga aaattatgaa accttcagat ttaagacctg
     2101 aaatagcaaa caatttgcag ttagtaaaat ctgaaattgg tataagtgag caattggaaa
     2161 cccgctacag aaaatggttg gataatgatg ttctatgggc agatttcacc caatttatac
     2221 atggcgattt atatgctggg catgtactag cttcaaagga tggagctgtt tcaggcgtta
     2281 ttgattggtc aacagcccat atagatgacc cagcgattga ttttgctggg catgtaactt
     2341 tgtttggaga agaaagcctc aaaactctaa tcatcgagta tgaaaaacta gggggtaaag
     2401 tttggaataa actatatgaa cagactttag aaagagcagc ggcctctcct ttgatgtatg
     2461 gtttatttgc cttagaaact caaaatgaaa gccttatcgt tggagcaaaa gctcagttgg
     2521 gagttatata atttaaaaat atgattgctg aggcactgtt gcaaatagtc ggtggtgata
     2581 aacttatcat c
//
LOCUS       DANMBQ010000331         2447 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.guided.224, whole genome shotgun sequence.
ACCESSION   DANMBQ010000331 DANMBQ010000000
VERSION     DANMBQ010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2447
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.guided.224"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            94..627
                     /gene="aadB"
                     /locus_tag="PXE92_002843"
     CDS             94..627
                     /gene="aadB"
                     /locus_tag="PXE92_002843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000381802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside nucleotidyltransferase
                     ANT(2'')-Ia"
                     /protein_id="HDL5762005.1"
                     /translation="MDTTQVTLIHKILAAADERNLPLWIGGGWAIDARLGRVTRKHDD
                     IDLTFPGERRGELEAIVEMLGGRVMEELDYGFLAEIGDELLDCEPAWWADEAYEIAEA
                     PQGSCPEAAEGVIAGRPVRCNSWEAIIWDYFYYADEVPPVDWPTKHIESYRLACTSLG
                     AEKVEVLRAAFRSRYAA"
     gene            685..1476
                     /locus_tag="PXE92_002844"
     CDS             685..1476
                     /locus_tag="PXE92_002844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANT(3'')-Ia family aminoglycoside
                     nucleotidyltransferase AadA25"
                     /protein_id="HDL5762006.1"
                     /translation="MREAVTIEISNQLSEVLSVIERHLESTLLAVHLYGSAVDGGLKP
                     YSDIDLLVTVAVKLDETTRRALLNDLMEASAFPGESETLRAIEVTLVVHDDIIPWRYP
                     AKRELQFGEWQRNDILAGIFEPAMIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQ
                     DLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAITGKIAPKDVAADWAIKRLPA
                     QYQPVLLEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK"
     gene            1553..2380
                     /locus_tag="PXE92_002845"
     CDS             1553..2380
                     /locus_tag="PXE92_002845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_034033256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxacillin-hydrolyzing class D beta-lactamase
                     OXA-2"
                     /protein_id="HDL5762007.1"
                     /translation="MAIRIFAILFSIFSLATFAHAQEGTLERSDWRKFFSEFQAKGTI
                     VVADERQADRAMLVFDPVRSKKRYSPASTFKIPHTLFALDAGAVRDEFQIFRWDGVNR
                     GFAGHNQDQDLRSAMRNSTVWVYELFAKEIGDDKARRYLKKIDYGNADPSTSNGDYWI
                     EGSLAISAQEQIAFLRKLYRNELPFRVEHQRLVKDLMIVEAGRNWILRAKTGWEGRMG
                     WWVGWVEWPTGSVFFALNIDTPNRMDDLFKREAIVRAILRSIEALPPNPAVNSDAAR"
BASE COUNT          593 a          585 c          700 g          569 t
ORIGIN      
        1 aataaatcaa ttattattat actgctgatc accgtattag cagcaacgat gttacgcagc
       61 agggcagtcg ccctaaaaca aaggttaggc cgcatggaca caacgcaggt cacattgata
      121 cacaaaattc tagctgcggc agatgagcga aatctgccgc tctggatcgg tgggggctgg
      181 gcgatcgatg cacggctagg gcgtgtaaca cgcaagcacg atgatattga tctgacgttt
      241 cccggcgaga ggcgcggcga gctcgaggca atagttgaaa tgctcggcgg gcgcgtcatg
      301 gaggagttgg actatggatt cttagcggag atcggggatg agttacttga ctgcgaacct
      361 gcttggtggg cagacgaagc gtatgaaatc gcggaggctc cgcagggctc gtgcccagag
      421 gcggctgagg gcgtcatcgc cgggcggcca gtccgttgta acagctggga ggcgatcatc
      481 tgggattact tttactatgc cgatgaagta ccaccagtgg actggcctac aaagcacata
      541 gagtcctaca ggctcgcatg cacctcactc ggggcggaaa aggttgaggt cttgcgtgcc
      601 gctttcaggt cgcgatatgc ggcctaacaa ttcgtccaag ccgacgccgc ttcgcggcgc
      661 ggcttaactc aggtgttaga catcatgagg gaagcggtga ccatcgaaat ttcgaaccaa
      721 ctatcagagg tgctaagcgt cattgagcgc catctggaat caacgttgct ggccgtgcat
      781 ttgtacggct ccgcagtgga tggcggcctg aagccataca gcgatattga tttgttggtt
      841 actgtggccg taaagcttga tgaaacgacg cggcgagcat tgctcaatga tcttatggag
      901 gcttcggctt tccctggcga gagcgagacg ctccgcgcta tagaagtcac ccttgtcgtg
      961 catgacgaca tcatcccgtg gcgttatccg gctaagcgcg agctgcaatt tggagaatgg
     1021 cagcgcaatg acattcttgc gggtatcttc gagccagcca tgatcgacat tgatctggct
     1081 atcttgctga caaaagcaag agaacatagc gttgccttgg taggtccagc ggcggaggaa
     1141 ctctttgatc cggttcctga acaggatcta tttgaggcgc taaatgaaac cttaacgcta
     1201 tggaactcgc cgcccgactg ggctggcgat gagcgaaatg tagtgcttac gttgtcccgc
     1261 atttggtaca gcgcaataac cggcaaaatc gcgccgaagg atgtcgctgc cgactgggca
     1321 ataaaacgcc tacctgccca gtatcagccc gtcttacttg aagctagaca ggcttatctt
     1381 ggacaagaag aagatcgctt ggcctcgcgc gcagatcagt tggaagaatt tgttcactac
     1441 gtgaaaggcg agatcaccaa ggtagtcggc aaataatgtc taacaattcg ttcaagccga
     1501 cgccgcttcg cggcgcggct taccttggcc gttgggcatt aaggaaaagt taatggcaat
     1561 ccgaatcttc gcgatacttt tctccatttt ttctcttgcc actttcgcgc atgcgcaaga
     1621 aggcacgcta gaacgttctg actggaggaa gtttttcagc gaatttcaag ccaaaggcac
     1681 gatagttgtg gcagacgaac gccaagcgga tcgtgccatg ttggtttttg atcctgtgcg
     1741 atcgaagaaa cgctactcgc ctgcatcgac attcaagata cctcatacac tttttgcact
     1801 tgatgcaggc gctgttcgtg atgagttcca gatttttcga tgggacggcg ttaacagggg
     1861 ctttgcaggc cacaatcaag accaagattt gcgatcagca atgcggaatt ctactgtttg
     1921 ggtgtatgag ctatttgcaa aggaaattgg tgatgacaaa gctcggcgct atttgaagaa
     1981 aatcgactat ggcaacgccg atccttcgac aagtaatggc gattactgga tagaaggcag
     2041 ccttgcaatc tcggcgcagg agcaaattgc atttctcagg aagctctatc gtaacgagct
     2101 gccctttcgg gtagaacatc agcgcttggt caaggatctc atgattgtgg aagccggtcg
     2161 caactggata ctgcgtgcaa agacgggctg ggaaggccgt atgggttggt gggtaggatg
     2221 ggttgagtgg ccgactggct ccgtattctt cgcactgaat attgatacgc caaacagaat
     2281 ggatgatctt ttcaagaggg aggcaatcgt gcgggcaatc cttcgctcta ttgaagcgtt
     2341 accgcccaac ccggcagtca actcggacgc tgcgcgataa aaccgcgcag cgccggttac
     2401 ttcaacgggc actgttgcaa atagtcggtg gtgataaact tatcatc
//
LOCUS       DANMBQ010000332         1629 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25596921-rid16723193.guided.248, whole genome shotgun sequence.
ACCESSION   DANMBQ010000332 DANMBQ010000000
VERSION     DANMBQ010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25596921
            Sequence Read Archive: SRR17858416
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1629)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574474.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574474.1
            Genome Coverage       :: 82x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:47:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,792
            Genes (coding)                    :: 2,713
            CDSs (with protein)               :: 2,713
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 41 of 79
            Pseudo Genes (incomplete)         :: 28 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25596921-rid16723193.guided.248"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KS"
                     /collection_date="2019-09-06"
                     /collected_by="Kansas State University Veterinary
                     Diagnostic Laboratory, Manhattan, KS"
     gene            <1..359
                     /locus_tag="PXE92_002846"
     CDS             <1..359
                     /locus_tag="PXE92_002846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5762008.1"
                     /translation="KNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWATQAS
                     IGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNIADF
                     YSRQNKEVFFTLEKLF"
     gene            505..978
                     /gene="gpt"
                     /locus_tag="PXE92_002847"
     CDS             505..978
                     /gene="gpt"
                     /locus_tag="PXE92_002847"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL5762009.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            1091..>1629
                     /gene="gmk"
                     /locus_tag="PXE92_002848"
     CDS             1091..>1629
                     /gene="gmk"
                     /locus_tag="PXE92_002848"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL5762010.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAEL"
BASE COUNT          459 a          301 c          405 g          464 t
ORIGIN      
        1 tcaaaaatgg gcggtttttt gcaaatttag acggcgtgcg tgaaattgca cgggaaaaag
       61 cacaaagctc gaataagtgg ctggctcgag tgggggcggt ttttcaaggc gaacgctggg
      121 caacgcaggc aagtatcggc tttggcaagc gatattttgc cgacaagcac tatttgtttg
      181 gctataagcg gttagacacg gaatatcaag ccaatttagc ggtttggaac cgcacttggc
      241 attggcaggg cattgtgccg aagctgaatt tccgttatca aaaaattgac agcaatattg
      301 ctgattttta ctctcgccaa aacaaggaag tctttttcac tttagaaaag ctattttagt
      361 gttggttttt tgtgctaagc atacgattgc gtagctgccg gcacaaaaaa ataaatgaaa
      421 tgatggcgaa aaaagcattt tcgggttatc ctagtgcaat tttttatatc ggggtagccc
      481 ccaattttat attaggttgt ttctatgagt gaaaaataca caaatgaaaa atatgtcgtg
      541 acgtgggata tgttccatat gcacgctcgc aagttggcag aaaatttatt acctgccaca
      601 cagtggaaag ggattattgc ggtgagccgt ggcggcttgt ttccggcagc cgttttagca
      661 cgtgagttgg gtattcgcca cgtagaaaca gtgtgcattg ccagctacga tcacgatagc
      721 caaggtgagt taaatgtgtt acacgcagcc gataccgatg gcgaaggctt tattgtggta
      781 gatgatttag tggataccgg caacacggca aaagaaattc gcagaatgta cccgaaagct
      841 cgttttgtaa ccgtgtttgc gaaaccgcac ggtgcaccgt tggttgatga ttatgtgatt
      901 gatattccac aagaaacgtg gattgagcag ccttgggatt taggcattac cttcgttcag
      961 cctttggcac gtagataatt ttgtgtaatg gacaatgaaa gttgtccatt attttttatt
     1021 tattcctatg aaatgtaggg gcgaatcatc attcgcccta ttcccaaaat caaataggta
     1081 tatacaaata atgagtttag gcaatcttta tattatttct gccccaagtg gagcaggaaa
     1141 atcttcctta attaacgcct tgttggcgga tttaccccgt tcggaagtac agctttcgat
     1201 ttcacacact acccgtcagc ctcgtccggc agaacaggac ggcgtgcatt attatttcac
     1261 ttcgcacgat gagtttaagc agctgattga gcaagggtat tttttagaat gggcggaggt
     1321 gtttggcaat tattacggca catcattgcc gatgattgaa cgtagcctag agcagggcat
     1381 tgatgtcttt ttggatattg actggcaagg ggctagacaa attcgggaaa aagtgccgaa
     1441 tgtgaaaacc gtttttattt tgccaccgtc aaaaacagaa ttggaaaaac gtttaatcgg
     1501 gcgtgggcaa gattccgctg aaaccattgc caaacgtatg gcagaggcgg tgtcggaaat
     1561 gaaccattac aatgagttcg attatgtgat tattaatgat gatttccaac aggcattggc
     1621 agagctaaa
//
